Query 032479
Match_columns 140
No_of_seqs 109 out of 208
Neff 4.1
Searched_HMMs 46136
Date Fri Mar 29 14:36:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032479.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032479hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1743 Ferric reductase-like 100.0 2.5E-54 5.4E-59 330.2 10.6 137 4-140 1-137 (137)
2 COG5120 GOT1 Membrane protein 100.0 3.5E-41 7.6E-46 254.3 7.1 128 4-140 1-129 (129)
3 PF04178 Got1: Got1/Sft2-like 99.7 3.3E-17 7.2E-22 121.7 8.0 111 11-130 1-116 (118)
4 KOG2887 Membrane protein invol 96.2 0.014 3E-07 47.2 6.2 91 15-105 51-157 (175)
5 PF13129 DUF3953: Protein of u 75.1 2.2 4.8E-05 26.8 1.7 34 45-82 5-38 (42)
6 COG5102 SFT2 Membrane protein 72.8 3.8 8.2E-05 33.8 3.0 44 36-79 102-145 (201)
7 PF03729 DUF308: Short repeat 66.1 30 0.00066 21.7 5.9 63 19-81 2-65 (72)
8 PRK10209 acid-resistance membr 59.2 87 0.0019 24.7 8.8 96 15-110 23-127 (190)
9 PF05915 DUF872: Eukaryotic pr 54.0 15 0.00032 27.6 2.9 37 13-49 47-92 (115)
10 PF04367 DUF502: Protein of un 47.7 30 0.00064 25.0 3.6 45 86-136 10-54 (108)
11 PF12390 Se-cys_synth_N: Selen 47.5 8.5 0.00019 23.4 0.6 24 111-134 1-24 (40)
12 PF14145 YrhK: YrhK-like prote 45.0 41 0.00089 22.4 3.7 32 19-50 14-45 (59)
13 PF09925 DUF2157: Predicted me 41.4 1.3E+02 0.0027 22.5 6.3 80 12-94 32-113 (145)
14 KOG2788 Glycosyltransferase [C 35.4 32 0.00069 31.3 2.5 47 68-121 260-306 (418)
15 PRK05771 V-type ATP synthase s 34.9 97 0.0021 28.8 5.7 111 16-134 449-577 (646)
16 PRK02935 hypothetical protein; 33.2 39 0.00084 25.7 2.3 44 6-52 9-52 (110)
17 PF05915 DUF872: Eukaryotic pr 30.6 83 0.0018 23.6 3.8 39 37-82 51-89 (115)
18 PF04156 IncA: IncA protein; 30.3 88 0.0019 24.0 4.0 18 35-52 44-61 (191)
19 COG2832 Uncharacterized protei 29.9 65 0.0014 24.8 3.1 56 84-139 6-70 (119)
20 COG2928 Uncharacterized conser 28.4 1E+02 0.0022 26.1 4.2 55 75-135 59-113 (222)
21 PF12158 DUF3592: Protein of u 27.7 1.6E+02 0.0035 20.9 4.8 24 14-37 2-25 (148)
22 PF02038 ATP1G1_PLM_MAT8: ATP1 26.4 94 0.002 20.6 3.0 29 37-66 19-47 (50)
23 PF06570 DUF1129: Protein of u 26.3 2.9E+02 0.0063 21.8 6.4 21 14-34 85-105 (206)
24 COG3247 HdeD Uncharacterized c 24.9 3.8E+02 0.0082 21.8 7.0 85 7-94 13-105 (185)
25 PF11023 DUF2614: Protein of u 24.3 56 0.0012 25.0 1.8 25 6-30 8-32 (114)
No 1
>KOG1743 consensus Ferric reductase-like proteins [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.5e-54 Score=330.23 Aligned_cols=137 Identities=65% Similarity=1.211 Sum_probs=135.8
Q ss_pred eeccccceeeeehhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhHhhcchhhhhhhhhccccceeeehhhhhHHHHhhc
Q 032479 4 FEMNDRKKIGLGLTGFGIFFTFLGIIFFFDKGLLAMGNILFIAGVSLTIGLKSTMQFFMKRQNYKGTISFGVGFFFVVIG 83 (140)
Q Consensus 4 ~~~~d~qkiGvgl~~~G~~f~~lGv~lffDr~lLalGNilfl~Gl~l~iG~~kt~~FF~~~~K~kGt~~F~~Gi~lvl~~ 83 (140)
||+||.||||+++|++|++|+++|++++|||+|||+||+||++|++++||.|||+.||+||||+|||+.|+.|++++++|
T Consensus 1 ~~l~d~kkiGvg~TgfG~ff~l~Gii~ffD~aLLa~GNlLfi~GvsliiG~~~t~~FF~r~~k~kGti~F~~G~l~vl~~ 80 (137)
T KOG1743|consen 1 MELNDLKKIGVGLTGFGVFFFLFGIILFFDKALLAMGNLLFIIGVSLIIGFRKTMQFFFRRQKMKGTISFLGGVLLVLFG 80 (137)
T ss_pred CccchhhHhCeEEechhHHHHHHHHHHHHhhHHHHhcchHHHHhHHHhhcchhhhhhheehhhcceeeehhhhHHHHHHh
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhhccchHHHHHhhhhCCccccccccchHHHHHHHhcCCCCCC
Q 032479 84 WPILGMILETYGFIVLFSGFWPTLSVFLQRIPILGWLFQQPFVRSFFDRYRSRRVPV 140 (140)
Q Consensus 84 ~~~iG~iiE~~G~~~LFg~F~P~i~~fl~~~P~ig~il~~P~i~~~~~~l~~~~lPv 140 (140)
||++||++|+||+++||++|+|++++|+|++|++|||+|+|++++.+||+++.|.||
T Consensus 81 wPi~Gm~lE~~Gff~LF~gF~P~i~~flrs~p~lG~i~~~p~i~~~~drl~~~~~pV 137 (137)
T KOG1743|consen 81 WPIFGMILETYGFFVLFRGFFPVIVVFLRSIPVLGWILNLPGIRSFLDRLAGPRVPV 137 (137)
T ss_pred hHHHHHHHHHHHHHHHHhhhhHHHHHHHHcCccccccccCccHHHHHHHhcCCCCCC
Confidence 999999999999999999999999999999999999999999999999999999887
No 2
>COG5120 GOT1 Membrane protein involved in Golgi transport [Intracellular trafficking and secretion]
Probab=100.00 E-value=3.5e-41 Score=254.28 Aligned_cols=128 Identities=36% Similarity=0.825 Sum_probs=124.9
Q ss_pred eeccccceeeeehhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhHhhcchhhhhhhhhccccceeeehhhhhHHHHhhc
Q 032479 4 FEMNDRKKIGLGLTGFGIFFTFLGIIFFFDKGLLAMGNILFIAGVSLTIGLKSTMQFFMKRQNYKGTISFGVGFFFVVIG 83 (140)
Q Consensus 4 ~~~~d~qkiGvgl~~~G~~f~~lGv~lffDr~lLalGNilfl~Gl~l~iG~~kt~~FF~~~~K~kGt~~F~~Gi~lvl~~ 83 (140)
||++|.||+|++.|+.|..|+..|+.+||||+++++||+++++|+.+++|.||+..||.||+|++||+.|+.|.+++++|
T Consensus 1 mwl~~lqk~GV~~t~~Gflffl~Gif~ffDraLl~lGNlL~iiG~fliags~ks~~fflRp~k~~Gsv~F~~G~ll~l~~ 80 (129)
T COG5120 1 MWLMNLQKSGVVVTSIGFLFFLVGIFLFFDRALLILGNLLMIIGIFLIAGSRKSMFFFLRPEKIQGSVIFAMGVLLLLYR 80 (129)
T ss_pred CchhhhhHcCeEEeehhHHHHHHHHHHHhhhHHHHhcCHHHHHHHHHHhcccceEEEEEchhHhhhhHHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhhccchHHHHHhhhhCCccccccccchHHHHHHHhcCCC-CCC
Q 032479 84 WPILGMILETYGFIVLFSGFWPTLSVFLQRIPILGWLFQQPFVRSFFDRYRSRR-VPV 140 (140)
Q Consensus 84 ~~~iG~iiE~~G~~~LFg~F~P~i~~fl~~~P~ig~il~~P~i~~~~~~l~~~~-lPv 140 (140)
||++|+++|+.|+++||+||+|++.+|||++|++| |+| ||+.+++ .||
T Consensus 81 fp~~GF~~E~LG~f~Lf~df~p~i~~fLRt~p~ig-----p~i----drl~g~~~~Pv 129 (129)
T COG5120 81 FPMFGFLLETLGLFLLFRDFIPTIRTFLRTLPLIG-----PYI----DRLLGRLMRPV 129 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-----hhH----HhhhceecCCC
Confidence 99999999999999999999999999999999999 776 8888877 786
No 3
>PF04178 Got1: Got1/Sft2-like family ; InterPro: IPR007305 Traffic through the yeast Golgi complex depends on a member of the syntaxin family of SNARE proteins, Sed5, present in early Golgi cisternae. Got1 is thought to facilitate Sed5-dependent fusion events []. This is a family of sequences derived from eukaryotic proteins. They are similar to a region of a SNARE-like protein required for traffic through the Golgi complex, SFT2 protein (P38166 from SWISSPROT) []. This is a conserved protein with four putative transmembrane helices, thought to be involved in vesicular transport in later Golgi compartments []. ; GO: 0016192 vesicle-mediated transport
Probab=99.71 E-value=3.3e-17 Score=121.75 Aligned_cols=111 Identities=34% Similarity=0.662 Sum_probs=102.5
Q ss_pred eeeeehhhHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHhHhhcchhhhhhhhhccccceeeehhhhhHHHHhhchhhH
Q 032479 11 KIGLGLTGFGIFFTFLGIIFFFDK---GLLAMGNILFIAGVSLTIGLKSTMQFFMKRQNYKGTISFGVGFFFVVIGWPIL 87 (140)
Q Consensus 11 kiGvgl~~~G~~f~~lGv~lffDr---~lLalGNilfl~Gl~l~iG~~kt~~FF~~~~K~kGt~~F~~Gi~lvl~~~~~i 87 (140)
|+|+.++..|.++.++|++++.|| .+.++||+++++|..+++||+|..+++.+|+|+++|++|+.++.++++ .
T Consensus 1 ~~G~~~~~l~~~~~~~~~~~~~~~kFa~l~tlGnil~l~s~~fL~Gp~~q~k~m~~~~R~~~t~~y~~~l~~tl~----~ 76 (118)
T PF04178_consen 1 KIGIICFFLSLIFFFLGVLLFFPRKFAILYTLGNILFLASTFFLIGPKKQFKFMFSPKRLIATIIYFISLILTLY----F 76 (118)
T ss_pred CeehHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHH----H
Confidence 789999999999999999999999 999999999999999999999999999999999999999999999998 9
Q ss_pred HHHHHHHHHHHhhccch-HHHHHhhhhC-CccccccccchHHHHH
Q 032479 88 GMILETYGFIVLFSGFW-PTLSVFLQRI-PILGWLFQQPFVRSFF 130 (140)
Q Consensus 88 G~iiE~~G~~~LFg~F~-P~i~~fl~~~-P~ig~il~~P~i~~~~ 130 (140)
|+..|.|++.++|+.+. |..+.++.+. |. |+ |.++++.
T Consensus 77 ~~~~~~~~l~llf~~~q~~al~wy~~s~iP~-g~----~~~~~~~ 116 (118)
T PF04178_consen 77 AFILKSYGLTLLFSIFQFPALIWYLLSYIPF-GR----PGLKKFF 116 (118)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHhCCC-hH----HHHHHHh
Confidence 99999999999999988 8888888774 95 53 6666654
No 4
>KOG2887 consensus Membrane protein involved in ER to Golgi transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.23 E-value=0.014 Score=47.22 Aligned_cols=91 Identities=19% Similarity=0.292 Sum_probs=71.8
Q ss_pred ehhhHHHHHHHHHHHHHhhhh--------HHHHHHHHHHHHhHhhcchhhhhhhhhccccceeeehhhhhHHHHhhc---
Q 032479 15 GLTGFGIFFTFLGIIFFFDKG--------LLAMGNILFIAGVSLTIGLKSTMQFFMKRQNYKGTISFGVGFFFVVIG--- 83 (140)
Q Consensus 15 gl~~~G~~f~~lGv~lffDr~--------lLalGNilfl~Gl~l~iG~~kt~~FF~~~~K~kGt~~F~~Gi~lvl~~--- 83 (140)
.+.+.|+++.+++-++|.--. +.++||++++.+-..++||++=++--+.|+|+-.|+.|+.-.++-++-
T Consensus 51 ~cl~~gv~c~~l~~~lf~v~~~~~~kFal~~TlGnll~i~sf~fLmGP~~ql~~m~~p~Rl~~T~~~l~~~~~Tly~al~ 130 (175)
T KOG2887|consen 51 ICLAGGVLCFLLAMVLFPVLVVSPRKFALLYTLGNLLAIGSFAFLMGPVSQLKHMFSPERLPATLSYLATMVLTLYVALW 130 (175)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccceeehhHHHHHHHHHHHHHHHHhHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHH
Confidence 456788999999999988655 679999999999999999999999999999999999999888775531
Q ss_pred -----hhhHHHHHHHHHHHHhhccchH
Q 032479 84 -----WPILGMILETYGFIVLFSGFWP 105 (140)
Q Consensus 84 -----~~~iG~iiE~~G~~~LFg~F~P 105 (140)
-+++=-++|...+.+-==+++|
T Consensus 131 ~ks~iLtllf~ilq~laliwYslSyiP 157 (175)
T KOG2887|consen 131 LKSKILTLLFCILQVLALIWYSLSYIP 157 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 2555566676666555433333
No 5
>PF13129 DUF3953: Protein of unknown function (DUF3953)
Probab=75.12 E-value=2.2 Score=26.82 Aligned_cols=34 Identities=26% Similarity=0.508 Sum_probs=24.9
Q ss_pred HHHhHhhcchhhhhhhhhccccceeeehhhhhHHHHhh
Q 032479 45 IAGVSLTIGLKSTMQFFMKRQNYKGTISFGVGFFFVVI 82 (140)
Q Consensus 45 l~Gl~l~iG~~kt~~FF~~~~K~kGt~~F~~Gi~lvl~ 82 (140)
+.-..+++|.+..- |++|..|..||..|++.++.
T Consensus 5 LG~m~~~~Gi~e~k----k~~k~~g~~~f~~~~f~~~V 38 (42)
T PF13129_consen 5 LGLMMFIIGIEEIK----KERKSSGILSFLVGAFILFV 38 (42)
T ss_pred HHHHHHHHHHHHHH----hcccceehHHHHHHHHheEE
Confidence 33344566666554 88999999999999887654
No 6
>COG5102 SFT2 Membrane protein involved in ER to Golgi transport [Intracellular trafficking and secretion]
Probab=72.77 E-value=3.8 Score=33.78 Aligned_cols=44 Identities=16% Similarity=0.316 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHhHhhcchhhhhhhhhccccceeeehhhhhHHH
Q 032479 36 LLAMGNILFIAGVSLTIGLKSTMQFFMKRQNYKGTISFGVGFFF 79 (140)
Q Consensus 36 lLalGNilfl~Gl~l~iG~~kt~~FF~~~~K~kGt~~F~~Gi~l 79 (140)
+.+|||+||+.+...++|+..-++--+.|+|+.=|..|++-.++
T Consensus 102 lwTmgslLfvl~Fg~l~Gf~ayl~~Lts~erlp~s~~ff~t~l~ 145 (201)
T COG5102 102 LWTMGSLLFVLMFGFLLGFRAYLEGLTSKERLPHSSWFFGTTLL 145 (201)
T ss_pred ehhHHHHHHHHHHHHHHhHHHHHHhhhhhhccchhHHHHHHHHH
Confidence 35899999999999999999999999999999999888876655
No 7
>PF03729 DUF308: Short repeat of unknown function (DUF308); InterPro: IPR005325 This represents a group of short repeats that occurs in a limited number of membrane proteins. It may divide further in short repeats of around 7-10 residues of the pattern G-#-X(2)-#(2)-X (#=hydrophobic).
Probab=66.06 E-value=30 Score=21.73 Aligned_cols=63 Identities=24% Similarity=0.376 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhHhhcchhhhhhhhhccccceee-ehhhhhHHHHh
Q 032479 19 FGIFFTFLGIIFFFDKGLLAMGNILFIAGVSLTIGLKSTMQFFMKRQNYKGT-ISFGVGFFFVV 81 (140)
Q Consensus 19 ~G~~f~~lGv~lffDr~lLalGNilfl~Gl~l~iG~~kt~~FF~~~~K~kGt-~~F~~Gi~lvl 81 (140)
.|+....+|+.++.....-...=...+....+.-|..+-.+.+.||++.++. .....|+.-+.
T Consensus 2 ~Gil~iv~Gi~~l~~p~~~~~~~~~i~g~~~i~~Gi~~l~~~~~~~~~~~~~~~~l~~gi~~i~ 65 (72)
T PF03729_consen 2 SGILFIVLGILLLFNPDASLAALAIILGIWLIISGIFQLISAFRRRKGSKGWWWSLLSGILSIV 65 (72)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHH
Confidence 3788899999999877665544445555566667888888888866543332 23334444443
No 8
>PRK10209 acid-resistance membrane protein; Provisional
Probab=59.15 E-value=87 Score=24.67 Aligned_cols=96 Identities=11% Similarity=0.138 Sum_probs=57.2
Q ss_pred ehhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhHhhcchhhhhhhhhccccceeee--hhhhhHHHHhh-----chhhH
Q 032479 15 GLTGFGIFFTFLGIIFFFDKGLLAMGNILFIAGVSLTIGLKSTMQFFMKRQNYKGTI--SFGVGFFFVVI-----GWPIL 87 (140)
Q Consensus 15 gl~~~G~~f~~lGv~lffDr~lLalGNilfl~Gl~l~iG~~kt~~FF~~~~K~kGt~--~F~~Gi~lvl~-----~~~~i 87 (140)
.+...|+....+|++.++|...-...=...+....++-|.-+-...|..|++-+... ....|+..++. .+|..
T Consensus 23 ~~li~Gil~ivlGi~~l~~P~~~~~~~~~~~g~~ll~~Gi~~l~~~~~~~~~~~~~~~~~ll~Gil~ii~Gil~l~~P~~ 102 (190)
T PRK10209 23 AIQIIAVLLFIGGLLCLSFPFVSGDALSTVVGILLICSGIALIVGLFANRSHNFWPMLSGILLGVAYLVLGYFFIRNPEV 102 (190)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 466789999999999999987544433333444445556666666665444321111 23445554443 46777
Q ss_pred HHHHH--HHHHHHhhccchHHHHHh
Q 032479 88 GMILE--TYGFIVLFSGFWPTLSVF 110 (140)
Q Consensus 88 G~iiE--~~G~~~LFg~F~P~i~~f 110 (140)
+...= ..|.+.+..+..-.+.++
T Consensus 103 ~~~~l~~l~g~~~iv~Gi~~i~~a~ 127 (190)
T PRK10209 103 GMFSLAAFIAGLFCVGGIIRLMSGY 127 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76543 357777777777665554
No 9
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=54.05 E-value=15 Score=27.61 Aligned_cols=37 Identities=32% Similarity=0.669 Sum_probs=21.0
Q ss_pred eeehhhHHHHHHHHHHHHHhhh---------hHHHHHHHHHHHHhH
Q 032479 13 GLGLTGFGIFFTFLGIIFFFDK---------GLLAMGNILFIAGVS 49 (140)
Q Consensus 13 Gvgl~~~G~~f~~lGv~lffDr---------~lLalGNilfl~Gl~ 49 (140)
++.|+.+|..++..|.+++.++ +++.+|=+.|+=|.+
T Consensus 47 a~~Lli~G~~li~~g~l~~~~~i~~~~~~~~~llilG~L~fIPG~Y 92 (115)
T PF05915_consen 47 AVFLLIFGTVLIIIGLLLFFGHIDGDRDRGWALLILGILCFIPGFY 92 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCCcccchHHHHHHHHHhccHH
Confidence 4555666666666666666554 455555555555544
No 10
>PF04367 DUF502: Protein of unknown function (DUF502); InterPro: IPR007462 This entry contains proteins that are predicted to be integral membrane proteins.
Probab=47.73 E-value=30 Score=25.04 Aligned_cols=45 Identities=18% Similarity=0.363 Sum_probs=31.2
Q ss_pred hHHHHHHHHHHHHhhccchHHHHHhhhhCCccccccccchHHHHHHHhcCC
Q 032479 86 ILGMILETYGFIVLFSGFWPTLSVFLQRIPILGWLFQQPFVRSFFDRYRSR 136 (140)
Q Consensus 86 ~iG~iiE~~G~~~LFg~F~P~i~~fl~~~P~ig~il~~P~i~~~~~~l~~~ 136 (140)
++|.+++.+=--. .+-..=..+.++|+++++ +..+|++.|.+.++
T Consensus 10 ~iG~l~~~~~g~~----l~~~~e~ll~riP~v~~i--Y~~~k~~~~~~~~~ 54 (108)
T PF04367_consen 10 LIGLLARNYFGKW----LLNWLERLLQRIPLVKSI--YSSIKQLVESFSGD 54 (108)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHCCchHHH--HHHHHHHHHHHhhc
Confidence 5677776543222 223344578899999988 77889999999754
No 11
>PF12390 Se-cys_synth_N: Selenocysteine synthase N terminal
Probab=47.51 E-value=8.5 Score=23.43 Aligned_cols=24 Identities=29% Similarity=0.689 Sum_probs=20.7
Q ss_pred hhhCCccccccccchHHHHHHHhc
Q 032479 111 LQRIPILGWLFQQPFVRSFFDRYR 134 (140)
Q Consensus 111 l~~~P~ig~il~~P~i~~~~~~l~ 134 (140)
+|++|-+..+|+.|.++...++..
T Consensus 1 lR~LPsVD~lL~~~~~~~l~~~~~ 24 (40)
T PF12390_consen 1 LRQLPSVDELLQEPEIQDLIERYG 24 (40)
T ss_pred CCCCchHHHHHhChhhHHHHHHcC
Confidence 588999999999999998887754
No 12
>PF14145 YrhK: YrhK-like protein
Probab=44.99 E-value=41 Score=22.38 Aligned_cols=32 Identities=34% Similarity=0.642 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhHh
Q 032479 19 FGIFFTFLGIIFFFDKGLLAMGNILFIAGVSL 50 (140)
Q Consensus 19 ~G~~f~~lGv~lffDr~lLalGNilfl~Gl~l 50 (140)
.|...+..|-++|+-+..-..|..+|++|=.+
T Consensus 14 ~~~~~FliGSilfl~~~~~~~g~wlFiiGS~~ 45 (59)
T PF14145_consen 14 IGGLLFLIGSILFLPESLYTAGTWLFIIGSIL 45 (59)
T ss_pred HHHHHHHHHHHHHcCchhHHHHHHHHHHHHHH
Confidence 34445555555555557777777777776443
No 13
>PF09925 DUF2157: Predicted membrane protein (DUF2157); InterPro: IPR018677 This family of various hypothetical prokaryotic proteins has no known function.
Probab=41.44 E-value=1.3e+02 Score=22.53 Aligned_cols=80 Identities=16% Similarity=0.181 Sum_probs=48.3
Q ss_pred eeeehhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhHhhcchhhhhhhh--hccccceeeehhhhhHHHHhhchhhHHH
Q 032479 12 IGLGLTGFGIFFTFLGIIFFFDKGLLAMGNILFIAGVSLTIGLKSTMQFF--MKRQNYKGTISFGVGFFFVVIGWPILGM 89 (140)
Q Consensus 12 iGvgl~~~G~~f~~lGv~lffDr~lLalGNilfl~Gl~l~iG~~kt~~FF--~~~~K~kGt~~F~~Gi~lvl~~~~~iG~ 89 (140)
.-..+..+|..+..+|++.|+-..-=.++...=+......+-..-...+. .|+++.-+..+...+.+++-- .+++
T Consensus 32 ~~~~l~~lGall~~~gii~fvA~nW~~i~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~ga---~ial 108 (145)
T PF09925_consen 32 LARILLYLGALLLGLGIILFVAANWDDIPRLAKLGLLLALLLLSYVGGFWLWRRRSPRLAEALLLLGAVLFGA---LIAL 108 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHH---HHHH
Confidence 45678899999999999999988777666643222222221112222222 266666677777766666553 4455
Q ss_pred HHHHH
Q 032479 90 ILETY 94 (140)
Q Consensus 90 iiE~~ 94 (140)
+-|+|
T Consensus 109 igQ~y 113 (145)
T PF09925_consen 109 IGQIY 113 (145)
T ss_pred HHhHh
Confidence 55555
No 14
>KOG2788 consensus Glycosyltransferase [Carbohydrate transport and metabolism]
Probab=35.35 E-value=32 Score=31.29 Aligned_cols=47 Identities=38% Similarity=0.648 Sum_probs=29.6
Q ss_pred eeeehhhhhHHHHhhchhhHHHHHHHHHHHHhhccchHHHHHhhhhCCcccccc
Q 032479 68 KGTISFGVGFFFVVIGWPILGMILETYGFIVLFSGFWPTLSVFLQRIPILGWLF 121 (140)
Q Consensus 68 kGt~~F~~Gi~lvl~~~~~iG~iiE~~G~~~LFg~F~P~i~~fl~~~P~ig~il 121 (140)
--|-|++.|..+-..+ +.|-.-|+ ..|| |+|.+++|+.++|=+=.+.
T Consensus 260 GDTfcyfaGMt~AVVg--ILGHFSKT---llLF--FiPQI~NFlyS~PQLfhlV 306 (418)
T KOG2788|consen 260 GDTFCYFAGMTFAVVG--ILGHFSKT---LLLF--FIPQILNFLYSLPQLFHLV 306 (418)
T ss_pred ccceeeeccchhhhhH--HhhhhHHH---HHHH--HHHHHHHHHHhhHHHcCcc
Confidence 3467888877654321 23333333 3455 8999999999999654443
No 15
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=34.94 E-value=97 Score=28.75 Aligned_cols=111 Identities=16% Similarity=0.267 Sum_probs=60.3
Q ss_pred hhhHHHHHHHHHHHHHh----------hhhHHHHHHHHHHHHhHhhcchhhhhhhhhccc---cceeeehhhhhHHHHhh
Q 032479 16 LTGFGIFFTFLGIIFFF----------DKGLLAMGNILFIAGVSLTIGLKSTMQFFMKRQ---NYKGTISFGVGFFFVVI 82 (140)
Q Consensus 16 l~~~G~~f~~lGv~lff----------Dr~lLalGNilfl~Gl~l~iG~~kt~~FF~~~~---K~kGt~~F~~Gi~lvl~ 82 (140)
-..+|++-.++|.++=. |.-+=.+|.++++.|+.++....-. ..... ..-|-.....|+++++.
T Consensus 449 sl~iGvi~i~~g~~l~~~~~~~~~~~~~a~~~~~~w~l~~~g~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~~~~~~ 525 (646)
T PRK05771 449 SLLIGVIHLFLGLLLGFINNVRKGDYKDAFLAQLGWLLILLGILLIVLGGFG---LVVGLGPLGLIGKYLIIGGVVLIIL 525 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHhhhh---hhccchHHHHHHHHHHHHHHHHHHH
Confidence 34567777777766511 1111237888888888776521100 00000 01122355556655543
Q ss_pred ch-----hhHHHHHHHHHHHHhhccchHHHHHhhhhCCccccccccchHHHHHHHhc
Q 032479 83 GW-----PILGMILETYGFIVLFSGFWPTLSVFLQRIPILGWLFQQPFVRSFFDRYR 134 (140)
Q Consensus 83 ~~-----~~iG~iiE~~G~~~LFg~F~P~i~~fl~~~P~ig~il~~P~i~~~~~~l~ 134 (140)
+- ...+.+. .++.+...+ ++.+++||+|-.=+ | |++-.+..++|.++
T Consensus 526 ~~~~~~~~~~~~~~-~~~~~~~~~-~~~d~lSY~RL~Al-g--La~~~ia~~~n~la 577 (646)
T PRK05771 526 GEGIDGKSLGGALG-GLGLYEITG-YLGDVLSYARLMAL-G--LAGAGIAMAFNLMA 577 (646)
T ss_pred hcchhccccchhhh-hhhHHHHHH-HHHHHHHHHHHHHH-H--HHHHHHHHHHHHHH
Confidence 21 1122233 567777776 88888898886543 2 56777777777765
No 16
>PRK02935 hypothetical protein; Provisional
Probab=33.16 E-value=39 Score=25.74 Aligned_cols=44 Identities=25% Similarity=0.505 Sum_probs=27.7
Q ss_pred ccccceeeeehhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhHhhc
Q 032479 6 MNDRKKIGLGLTGFGIFFTFLGIIFFFDKGLLAMGNILFIAGVSLTI 52 (140)
Q Consensus 6 ~~d~qkiGvgl~~~G~~f~~lGv~lffDr~lLalGNilfl~Gl~l~i 52 (140)
+|.-+..++.++..|+...-+|+++ |+--.+--+..++|+..++
T Consensus 9 INkiRt~aL~lvfiG~~vMy~Giff---~~~~~~m~ifm~~G~l~~l 52 (110)
T PRK02935 9 INKIRTFALSLVFIGFIVMYLGIFF---RESIIIMTIFMLLGFLAVI 52 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh---cccHHHHHHHHHHHHHHHH
Confidence 5666778888888888888888433 3333333344455655555
No 17
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=30.61 E-value=83 Score=23.58 Aligned_cols=39 Identities=23% Similarity=0.381 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHhHhhcchhhhhhhhhccccceeeehhhhhHHHHhh
Q 032479 37 LAMGNILFIAGVSLTIGLKSTMQFFMKRQNYKGTISFGVGFFFVVI 82 (140)
Q Consensus 37 LalGNilfl~Gl~l~iG~~kt~~FF~~~~K~kGt~~F~~Gi~lvl~ 82 (140)
+..|-++.++|..+..+.- ..++-++...+.+|++..+=
T Consensus 51 li~G~~li~~g~l~~~~~i-------~~~~~~~~~llilG~L~fIP 89 (115)
T PF05915_consen 51 LIFGTVLIIIGLLLFFGHI-------DGDRDRGWALLILGILCFIP 89 (115)
T ss_pred HHHHHHHHHHHHHHHhccc-------CCCCcccchHHHHHHHHHhc
Confidence 3445555555555555421 15566777788888776653
No 18
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=30.32 E-value=88 Score=23.97 Aligned_cols=18 Identities=33% Similarity=0.565 Sum_probs=11.5
Q ss_pred hHHHHHHHHHHHHhHhhc
Q 032479 35 GLLAMGNILFIAGVSLTI 52 (140)
Q Consensus 35 ~lLalGNilfl~Gl~l~i 52 (140)
+++|+|=+++..|+....
T Consensus 44 ~~lAlg~vL~~~g~~~~~ 61 (191)
T PF04156_consen 44 ALLALGVVLLSLGLLCLL 61 (191)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 456667677776666554
No 19
>COG2832 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.91 E-value=65 Score=24.81 Aligned_cols=56 Identities=25% Similarity=0.620 Sum_probs=43.8
Q ss_pred hhhHHHHHHHHHHHHhhccchHH-------HHHhhhhCCcc-ccccccchHHHHHHHhcCCC-CC
Q 032479 84 WPILGMILETYGFIVLFSGFWPT-------LSVFLQRIPIL-GWLFQQPFVRSFFDRYRSRR-VP 139 (140)
Q Consensus 84 ~~~iG~iiE~~G~~~LFg~F~P~-------i~~fl~~~P~i-g~il~~P~i~~~~~~l~~~~-lP 139 (140)
|-.+|++.-..|+...|=.-+|+ +.-|.|+.|-. .+++++|+.++.+...++.+ .|
T Consensus 6 ~i~iGfl~l~LGIiGifLPlLPTTPFlLLaa~cFaRsSpRf~~WLl~~~~fg~~v~~~~e~~ai~ 70 (119)
T COG2832 6 YIILGFLSLALGIIGIFLPLLPTTPFLLLAAACFARSSPRFHAWLLRHKYFGPYVRDWREGGAIP 70 (119)
T ss_pred HHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHcCCcHHHHHHHcCchhhHHHHHHHHcCCCC
Confidence 45688999999999888888886 66788999944 67889999998887765433 44
No 20
>COG2928 Uncharacterized conserved protein [Function unknown]
Probab=28.41 E-value=1e+02 Score=26.09 Aligned_cols=55 Identities=16% Similarity=0.284 Sum_probs=33.4
Q ss_pred hhHHHHhhchhhHHHHHHHHHHHHhhccchHHHHHhhhhCCccccccccchHHHHHHHhcC
Q 032479 75 VGFFFVVIGWPILGMILETYGFIVLFSGFWPTLSVFLQRIPILGWLFQQPFVRSFFDRYRS 135 (140)
Q Consensus 75 ~Gi~lvl~~~~~iG~iiE~~G~~~LFg~F~P~i~~fl~~~P~ig~il~~P~i~~~~~~l~~ 135 (140)
+|..+.+.-..++|++.... .++.-+-..=+.|+|+|++++| .--+||++|.+.+
T Consensus 59 lg~il~iili~l~G~l~~~~----ig~~l~~~~d~~L~RiPlv~~I--Y~s~kqi~etll~ 113 (222)
T COG2928 59 LGVILAIILIFLLGFLARNM----IGRSLLSLGDSLLRRIPLVKSI--YKSAKQVVETLLS 113 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHH----hhhHHHHHHHHHHccCccHHHH--HHHHHHHHHHHHh
Confidence 34444433344666655432 2333333445679999999988 4567888888854
No 21
>PF12158 DUF3592: Protein of unknown function (DUF3592); InterPro: IPR021994 This family of proteins is functionally uncharacterised.This family of proteins is found in bacteria, archaea, eukaryotes and viruses. Proteins in this family are typically between 150 and 242 amino acids in length.
Probab=27.69 E-value=1.6e+02 Score=20.93 Aligned_cols=24 Identities=29% Similarity=0.584 Sum_probs=13.4
Q ss_pred eehhhHHHHHHHHHHHHHhhhhHH
Q 032479 14 LGLTGFGIFFTFLGIIFFFDKGLL 37 (140)
Q Consensus 14 vgl~~~G~~f~~lGv~lffDr~lL 37 (140)
+.+..+|+++.++|+.++......
T Consensus 2 ~~~~~~~~i~l~~g~~~~~~~~~~ 25 (148)
T PF12158_consen 2 VFLLLFGIIFLLIGLVLLIGGIFL 25 (148)
T ss_pred eEhHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666655444433
No 22
>PF02038 ATP1G1_PLM_MAT8: ATP1G1/PLM/MAT8 family; InterPro: IPR000272 The FXYD protein family contains at least seven members in mammals []. Two other family members that are not obvious orthologs of any identified mammalian FXYD protein exist in zebrafish. All these proteins share a signature sequence of six conserved amino acids comprising the FXYD motif in the NH2-terminus, and two glycines and one serine residue in the transmembrane domain. FXYD proteins are widely distributed in mammalian tissues with prominent expression in tissues that perform fluid and solute transport or that are electrically excitable. Initial functional characterisation suggested that FXYD proteins act as channels or as modulators of ion channels however studies have revealed that most FXYD proteins have another specific function and act as tissue-specific regulatory subunits of the Na,K-ATPase. Each of these auxiliary subunits produces a distinct functional effect on the transport characteristics of the Na,K-ATPase that is adjusted to the specific functional demands of the tissue in which the FXYD protein is expressed. FXYD proteins appear to preferentially associate with Na,K-ATPase alpha1-beta isozymes, and affect their function in a way that render them operationally complementary or supplementary to coexisting isozymes.; GO: 0005216 ion channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2JO1_A 2JP3_A 2ZXE_G 3A3Y_G 3N23_E 3B8E_H 3KDP_G 3N2F_E.
Probab=26.42 E-value=94 Score=20.59 Aligned_cols=29 Identities=21% Similarity=0.416 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHhHhhcchhhhhhhhhcccc
Q 032479 37 LAMGNILFIAGVSLTIGLKSTMQFFMKRQN 66 (140)
Q Consensus 37 LalGNilfl~Gl~l~iG~~kt~~FF~~~~K 66 (140)
|...-++|+.|+.+++. +|.-.=|.|+++
T Consensus 19 Li~A~vlfi~Gi~iils-~kckCk~~qk~~ 47 (50)
T PF02038_consen 19 LIFAGVLFILGILIILS-GKCKCKFNQKPR 47 (50)
T ss_dssp HHHHHHHHHHHHHHHCT-THHHHHHSTTTT
T ss_pred hHHHHHHHHHHHHHHHc-CccccCCCCCCC
Confidence 44566788888877765 555555665554
No 23
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=26.31 E-value=2.9e+02 Score=21.81 Aligned_cols=21 Identities=43% Similarity=0.654 Sum_probs=18.1
Q ss_pred eehhhHHHHHHHHHHHHHhhh
Q 032479 14 LGLTGFGIFFTFLGIIFFFDK 34 (140)
Q Consensus 14 vgl~~~G~~f~~lGv~lffDr 34 (140)
.+++.+|++..+-|++.+|+.
T Consensus 85 ~~L~~~~if~~~~gi~~~f~~ 105 (206)
T PF06570_consen 85 NSLLFFGIFSLLFGIMGFFSP 105 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 457788999999999999988
No 24
>COG3247 HdeD Uncharacterized conserved protein [Function unknown]
Probab=24.89 E-value=3.8e+02 Score=21.78 Aligned_cols=85 Identities=20% Similarity=0.330 Sum_probs=0.0
Q ss_pred cccceeeeehhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhHhhcchhhhhhhhhccc---cceeeehhhhhHHHHhhc
Q 032479 7 NDRKKIGLGLTGFGIFFTFLGIIFFFDKGLLAMGNILFIAGVSLTIGLKSTMQFFMKRQ---NYKGTISFGVGFFFVVIG 83 (140)
Q Consensus 7 ~d~qkiGvgl~~~G~~f~~lGv~lffDr~lLalGNilfl~Gl~l~iG~~kt~~FF~~~~---K~kGt~~F~~Gi~lvl~~ 83 (140)
++.||.=-.....|+....+|++.++|-+.=..--..++-=..++-|.-....-|..|+ +++. ++-|++.++.+
T Consensus 13 ~~l~~~w~~~l~~Gv~lii~Gl~~l~~P~~s~~~l~~~vG~~lli~Gi~~ii~af~~r~~~~~W~l---ll~Gil~i~~g 89 (185)
T COG3247 13 EMLKKPWWWVLLLGVLLIILGLLALFNPAISTVALVYVVGILLLISGIIEIISAFGNRSDNSFWPL---LLSGILSILLG 89 (185)
T ss_pred hhhcCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHH---HHHHHHHHHHH
Q ss_pred -----hhhHHHHHHHH
Q 032479 84 -----WPILGMILETY 94 (140)
Q Consensus 84 -----~~~iG~iiE~~ 94 (140)
+|..|....+|
T Consensus 90 il~~~~~~~~~~~l~~ 105 (185)
T COG3247 90 ILAGFNPGLGALVLTY 105 (185)
T ss_pred HHHHHhhhHHHHHHHH
No 25
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=24.25 E-value=56 Score=25.04 Aligned_cols=25 Identities=28% Similarity=0.646 Sum_probs=19.4
Q ss_pred ccccceeeeehhhHHHHHHHHHHHH
Q 032479 6 MNDRKKIGLGLTGFGIFFTFLGIIF 30 (140)
Q Consensus 6 ~~d~qkiGvgl~~~G~~f~~lGv~l 30 (140)
+|+-+.+++.|+..|+....+|+++
T Consensus 8 iN~~R~~al~lif~g~~vmy~gi~f 32 (114)
T PF11023_consen 8 INKIRTFALSLIFIGMIVMYIGIFF 32 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 4566778888888888888888644
Done!