Query 032479
Match_columns 140
No_of_seqs 109 out of 208
Neff 4.1
Searched_HMMs 29240
Date Tue Mar 26 00:06:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032479.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032479hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a2n_B Isoprenylcysteine carbo 26.8 76 0.0026 23.9 4.3 68 34-107 75-150 (194)
2 1b35_D CRPV, protein (cricket 21.9 30 0.001 22.4 0.9 16 110-125 27-42 (57)
3 2jp3_A FXYD domain-containing 16.4 1.2E+02 0.004 20.3 2.9 31 37-68 22-52 (67)
4 2jo1_A Phospholemman; FXYD1, N 13.3 1.5E+02 0.0051 20.1 2.8 29 37-66 21-49 (72)
5 2zxe_G FXYD10, phospholemman-l 11.0 1.5E+02 0.0051 20.2 2.2 29 37-66 24-52 (74)
6 2ks1_B Epidermal growth factor 9.7 1.3E+02 0.0045 18.2 1.5 9 59-67 32-40 (44)
7 2l2t_A Receptor tyrosine-prote 8.1 1.6E+02 0.0056 17.9 1.4 9 59-67 31-39 (44)
8 3gp2_B Calcium/calmodulin-depe 7.2 34 0.0012 18.4 -1.8 12 61-72 3-14 (22)
9 4fb5_A Probable oxidoreductase 6.9 82 0.0028 24.5 -0.5 19 3-21 17-35 (393)
10 3tia_A Neuraminidase; 6-bladed 6.6 1E+02 0.0036 27.4 0.0 22 6-27 1-25 (469)
No 1
>4a2n_B Isoprenylcysteine carboxyl methyltransferase; membrane protein, RAS and RHO gtpases signallin; HET: SAH PLM CDL; 3.40A {Methanosarcina acetivorans}
Probab=26.80 E-value=76 Score=23.95 Aligned_cols=68 Identities=9% Similarity=0.079 Sum_probs=46.0
Q ss_pred hhHHHHHHHHHHHHhHhhcchhhhh-hhhhc------cccceeeehhhhhHHHHhhchh-hHHHHHHHHHHHHhhccchH
Q 032479 34 KGLLAMGNILFIAGVSLTIGLKSTM-QFFMK------RQNYKGTISFGVGFFFVVIGWP-ILGMILETYGFIVLFSGFWP 105 (140)
Q Consensus 34 r~lLalGNilfl~Gl~l~iG~~kt~-~FF~~------~~K~kGt~~F~~Gi~lvl~~~~-~iG~iiE~~G~~~LFg~F~P 105 (140)
..+..+|.+++++|+.+-.--.++. ++|.. ++++-=|..|- ..|+| ..|.+++..|.....++..+
T Consensus 75 ~~~~~~G~~l~l~G~~l~~~a~~~Lg~~f~~~~~~~~~~~Lvt~G~y~------~vRHP~Y~G~~l~~~g~~l~~~s~~~ 148 (194)
T 4a2n_B 75 DSIRLFALIVTFLNIGLFTKIHKDLGNNWSAILEIKDGHKLVKEGIYK------NIRHPMYAHLWLWVITQGIILSNWVV 148 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHGGGCCSSCCEETTCCCCCSSTTT------TBSSHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCeeeecCcch------hccCccHHHHHHHHHHHHHHhccHHH
Confidence 3566899999999999988888886 45552 23333333322 44666 67888888888887777655
Q ss_pred HH
Q 032479 106 TL 107 (140)
Q Consensus 106 ~i 107 (140)
.+
T Consensus 149 ~~ 150 (194)
T 4a2n_B 149 LI 150 (194)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 2
>1b35_D CRPV, protein (cricket paralysis virus, VP4); insect picorna-like virus, icosahedral virus; 2.40A {Cricket paralysis virus} SCOP: b.121.4.1
Probab=21.92 E-value=30 Score=22.42 Aligned_cols=16 Identities=44% Similarity=0.825 Sum_probs=13.5
Q ss_pred hhhhCCccccccccch
Q 032479 110 FLQRIPILGWLFQQPF 125 (140)
Q Consensus 110 fl~~~P~ig~il~~P~ 125 (140)
-++.+|++|++++-|.
T Consensus 27 t~s~ipilgn~fs~pa 42 (57)
T 1b35_D 27 TLSHIPVLGNIFSTPA 42 (57)
T ss_dssp CTTCCCCSCCSSSSCT
T ss_pred hhhccccccccccchH
Confidence 4678999999998874
No 3
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=16.36 E-value=1.2e+02 Score=20.35 Aligned_cols=31 Identities=23% Similarity=0.281 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHhHhhcchhhhhhhhhccccce
Q 032479 37 LAMGNILFIAGVSLTIGLKSTMQFFMKRQNYK 68 (140)
Q Consensus 37 LalGNilfl~Gl~l~iG~~kt~~FF~~~~K~k 68 (140)
|..+-+||+.|+.+++. +|.-.=|.|+++-+
T Consensus 22 LifA~vLfi~GI~iilS-~kcrCk~~qk~~~~ 52 (67)
T 2jp3_A 22 LIFGGLLCIAGIALALS-GKCKCRRNHTPSSL 52 (67)
T ss_dssp HHHHHHHHHHHHHHHHT-THHHHHHTCCTTTS
T ss_pred hhhHHHHHHHHHHHHHc-CcccccCCCCCCCC
Confidence 45566788888888774 45666676665543
No 4
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=13.29 E-value=1.5e+02 Score=20.06 Aligned_cols=29 Identities=28% Similarity=0.510 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHhHhhcchhhhhhhhhcccc
Q 032479 37 LAMGNILFIAGVSLTIGLKSTMQFFMKRQN 66 (140)
Q Consensus 37 LalGNilfl~Gl~l~iG~~kt~~FF~~~~K 66 (140)
|.++-+||+.|+.+++. .|.-.=|.||++
T Consensus 21 LifA~vLfi~GI~iilS-~KckCk~~qk~r 49 (72)
T 2jo1_A 21 LVIAGILFILGILIVLS-RRCRCKFNQQQR 49 (72)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHHHCTTTS
T ss_pred hHHHHHHHHHHHHHHHc-CccccCCCCCCC
Confidence 45566788888887774 456666766654
No 5
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=11.03 E-value=1.5e+02 Score=20.18 Aligned_cols=29 Identities=14% Similarity=0.298 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHhHhhcchhhhhhhhhcccc
Q 032479 37 LAMGNILFIAGVSLTIGLKSTMQFFMKRQN 66 (140)
Q Consensus 37 LalGNilfl~Gl~l~iG~~kt~~FF~~~~K 66 (140)
|.+.-+||+.|+.+++. +|.-.=|.||++
T Consensus 24 LifA~vLfi~GI~iilS-~kcrCk~~qk~~ 52 (74)
T 2zxe_G 24 LIVAAVLCVIGIIILLA-GKCRCKFNQNKR 52 (74)
T ss_dssp HHHHHHHHHHHHHHHTT-TC----------
T ss_pred chhHHHHHHHHHHHHHc-CccccCCCCCCC
Confidence 45566888888888774 466666666654
No 6
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=9.74 E-value=1.3e+02 Score=18.24 Aligned_cols=9 Identities=33% Similarity=0.803 Sum_probs=4.4
Q ss_pred hhhhccccc
Q 032479 59 QFFMKRQNY 67 (140)
Q Consensus 59 ~FF~~~~K~ 67 (140)
.||.||+|.
T Consensus 32 ~~~~RRr~~ 40 (44)
T 2ks1_B 32 GLFMRRRHI 40 (44)
T ss_dssp HHHHHTTTC
T ss_pred HHHhhhhHh
Confidence 345555544
No 7
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=8.08 E-value=1.6e+02 Score=17.87 Aligned_cols=9 Identities=11% Similarity=0.582 Sum_probs=4.5
Q ss_pred hhhhccccc
Q 032479 59 QFFMKRQNY 67 (140)
Q Consensus 59 ~FF~~~~K~ 67 (140)
.||.||+|.
T Consensus 31 ~~~~RRRr~ 39 (44)
T 2l2t_A 31 AVYVRRKSI 39 (44)
T ss_dssp HHHHHTTCS
T ss_pred HHHhhhhhh
Confidence 455555543
No 8
>3gp2_B Calcium/calmodulin-dependent protein kinase type II delta chain; metal binding protein, ATP-binding, calmodulin- binding, nucleotide-binding; 1.46A {Homo sapiens}
Probab=7.22 E-value=34 Score=18.44 Aligned_cols=12 Identities=42% Similarity=0.659 Sum_probs=8.3
Q ss_pred hhccccceeeeh
Q 032479 61 FMKRQNYKGTIS 72 (140)
Q Consensus 61 F~~~~K~kGt~~ 72 (140)
|..|+|+||.+.
T Consensus 3 FNaRRKLK~aIl 14 (22)
T 3gp2_B 3 FNARRKLKGAIL 14 (26)
T ss_pred ccHHHHHHHHHH
Confidence 556788888653
No 9
>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}
Probab=6.94 E-value=82 Score=24.49 Aligned_cols=19 Identities=32% Similarity=0.639 Sum_probs=9.4
Q ss_pred ceeccccceeeeehhhHHH
Q 032479 3 SFEMNDRKKIGLGLTGFGI 21 (140)
Q Consensus 3 ~~~~~d~qkiGvgl~~~G~ 21 (140)
+++++..|||.+|++|.|-
T Consensus 17 ~~~~~~MkkirvgiIG~G~ 35 (393)
T 4fb5_A 17 NLYFQSMKPLGIGLIGTGY 35 (393)
T ss_dssp -------CCCEEEEECCSH
T ss_pred CccccCCCCccEEEEcCCH
Confidence 4566777888888888774
No 10
>3tia_A Neuraminidase; 6-bladed beta-propeller, calcium binding, glycosylation, ANT hydrolase-hydrolase inhibitor complex; HET: NAG BMA MAN LNV; 1.80A {Influenza a virus} PDB: 3tib_A* 3tic_A* 2bat_A* 1ivd_A* 1inh_A* 1inw_A* 1inx_A* 1ivc_A* 1ing_A* 1ive_A* 1ivf_A* 1ivg_A* 1nn2_A* 2aep_A* 2aeq_A* 4gzq_A* 4gzo_A* 4gzp_A* 4gzt_A* 4gzs_A* ...
Probab=6.62 E-value=1e+02 Score=27.39 Aligned_cols=22 Identities=23% Similarity=0.227 Sum_probs=0.0
Q ss_pred cccccee---eeehhhHHHHHHHHH
Q 032479 6 MNDRKKI---GLGLTGFGIFFTFLG 27 (140)
Q Consensus 6 ~~d~qki---Gvgl~~~G~~f~~lG 27 (140)
||.|||| |..-+++|++-+++|
T Consensus 1 MNPNQKIITIGSVSLtLgtInLLLq 25 (469)
T 3tia_A 1 MNPNQKIITIGSVSLTIATVCFLMQ 25 (469)
T ss_dssp -------------------------
T ss_pred CCCCceEEEEcchhHHHHHHHHHHh
Confidence 5789995 544444444444444
Done!