Query 032479
Match_columns 140
No_of_seqs 109 out of 208
Neff 4.1
Searched_HMMs 13730
Date Tue Mar 26 00:06:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032479.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/032479hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1lc0a1 c.2.1.3 (A:2-128,A:247 11.4 23 0.0017 23.5 -0.1 16 6-21 2-17 (172)
2 d3dtua1 f.24.1.1 (A:14-551) Ba 8.9 46 0.0034 27.6 0.9 24 7-30 11-34 (538)
3 d1utca1 a.118.1.4 (A:331-355) 7.0 28 0.0021 18.0 -0.8 14 114-127 5-18 (26)
4 d1v54a_ f.24.1.1 (A:) Mitochon 6.9 64 0.0047 26.5 0.9 25 6-30 9-33 (514)
5 d2otaa1 a.284.1.1 (A:7-68) Hyp 6.7 91 0.0066 19.0 1.3 11 33-43 25-35 (62)
6 d2qtia1 a.284.1.1 (A:8-72) Unc 6.2 1E+02 0.0073 18.9 1.3 11 33-43 24-34 (65)
7 d1m56c_ f.25.1.1 (C:) Bacteria 6.0 2E+02 0.015 20.6 3.3 20 16-35 19-38 (265)
8 d2bcqa2 a.60.12.1 (A:329-385) 5.8 30 0.0022 20.6 -1.4 10 5-14 40-49 (57)
9 d2qtva1 a.71.2.1 (A:524-626) S 5.8 1.5E+02 0.011 19.4 2.2 24 102-125 58-81 (103)
10 d1pv7a_ f.38.1.2 (A:) Lactose 5.7 74 0.0054 21.3 0.5 33 105-137 42-74 (417)
No 1
>d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=11.42 E-value=23 Score=23.53 Aligned_cols=16 Identities=25% Similarity=0.540 Sum_probs=14.0
Q ss_pred ccccceeeeehhhHHH
Q 032479 6 MNDRKKIGLGLTGFGI 21 (140)
Q Consensus 6 ~~d~qkiGvgl~~~G~ 21 (140)
++++.|+++++.|.|-
T Consensus 2 ~~~~~k~kv~iIG~G~ 17 (172)
T d1lc0a1 2 ITNSGKFGVVVVGVGR 17 (172)
T ss_dssp CCCCCSEEEEEECCSH
T ss_pred CCCCCCcEEEEEcCCH
Confidence 5789999999999985
No 2
>d3dtua1 f.24.1.1 (A:14-551) Bacterial aa3 type cytochrome c oxidase subunit I {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=8.90 E-value=46 Score=27.57 Aligned_cols=24 Identities=21% Similarity=0.333 Sum_probs=21.6
Q ss_pred cccceeeeehhhHHHHHHHHHHHH
Q 032479 7 NDRKKIGLGLTGFGIFFTFLGIIF 30 (140)
Q Consensus 7 ~d~qkiGvgl~~~G~~f~~lGv~l 30 (140)
+|.||||+.-...|+.+.++|..+
T Consensus 11 ~dHK~IG~~Yl~~~~~~~~~G~~~ 34 (538)
T d3dtua1 11 TNHKDIGVLYLFTGGLVGLISVAF 34 (538)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999999999999999998864
No 3
>d1utca1 a.118.1.4 (A:331-355) Clathrin heavy-chain linker domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=7.04 E-value=28 Score=17.96 Aligned_cols=14 Identities=29% Similarity=0.489 Sum_probs=10.6
Q ss_pred CCccccccccchHH
Q 032479 114 IPILGWLFQQPFVR 127 (140)
Q Consensus 114 ~P~ig~il~~P~i~ 127 (140)
+|+|.++++.|-++
T Consensus 5 ipyi~~vlqnpdla 18 (26)
T d1utca1 5 IPYITNVLQNPDLA 18 (26)
T ss_dssp HHHHHHTTCCHHHH
T ss_pred hhhhhhhccChhHH
Confidence 57788888888654
No 4
>d1v54a_ f.24.1.1 (A:) Mitochondrial cytochrome c oxidase, subunit I {Cow (Bos taurus) [TaxId: 9913]}
Probab=6.95 E-value=64 Score=26.50 Aligned_cols=25 Identities=24% Similarity=0.380 Sum_probs=21.1
Q ss_pred ccccceeeeehhhHHHHHHHHHHHH
Q 032479 6 MNDRKKIGLGLTGFGIFFTFLGIIF 30 (140)
Q Consensus 6 ~~d~qkiGvgl~~~G~~f~~lGv~l 30 (140)
-+|-|+||+.-..+|+.+.+.|.++
T Consensus 9 t~dHK~iG~lYl~~~~~~~~~G~~l 33 (514)
T d1v54a_ 9 STNHKDIGTLYLLFGAWAGMVGTAL 33 (514)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3689999999999999988887654
No 5
>d2otaa1 a.284.1.1 (A:7-68) Hypothetical protein CPS2611 {Colwellia psychrerythraea [TaxId: 28229]}
Probab=6.71 E-value=91 Score=18.97 Aligned_cols=11 Identities=36% Similarity=0.745 Sum_probs=8.9
Q ss_pred hhhHHHHHHHH
Q 032479 33 DKGLLAMGNIL 43 (140)
Q Consensus 33 Dr~lLalGNil 43 (140)
|=.|+++||..
T Consensus 25 DLSLMvLGN~v 35 (62)
T d2otaa1 25 DLALMCLGNAV 35 (62)
T ss_dssp HHHHHHHHHHH
T ss_pred chHHHHHHHHH
Confidence 66789999975
No 6
>d2qtia1 a.284.1.1 (A:8-72) Uncharacterized protein SO2176 {Shewanella oneidensis [TaxId: 70863]}
Probab=6.16 E-value=1e+02 Score=18.90 Aligned_cols=11 Identities=45% Similarity=0.791 Sum_probs=8.6
Q ss_pred hhhHHHHHHHH
Q 032479 33 DKGLLAMGNIL 43 (140)
Q Consensus 33 Dr~lLalGNil 43 (140)
|=.|+++||..
T Consensus 24 DLSLMvLGN~v 34 (65)
T d2qtia1 24 DLSLMALGNCV 34 (65)
T ss_dssp HHHHHHHHHHH
T ss_pred hHHHHHHHHHH
Confidence 56789999974
No 7
>d1m56c_ f.25.1.1 (C:) Bacterial aa3 type cytochrome c oxidase subunit III {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=6.02 E-value=2e+02 Score=20.62 Aligned_cols=20 Identities=15% Similarity=0.600 Sum_probs=17.0
Q ss_pred hhhHHHHHHHHHHHHHhhhh
Q 032479 16 LTGFGIFFTFLGIIFFFDKG 35 (140)
Q Consensus 16 l~~~G~~f~~lGv~lffDr~ 35 (140)
++++|++.+..|...+++..
T Consensus 19 ~~s~~l~~~~~g~~~~~~~~ 38 (265)
T d1m56c_ 19 MASVGAFVMLFGAVLWMHGS 38 (265)
T ss_dssp HHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHcc
Confidence 57889999999999998754
No 8
>d2bcqa2 a.60.12.1 (A:329-385) DNA polymerase lambda {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.79 E-value=30 Score=20.59 Aligned_cols=10 Identities=30% Similarity=0.690 Sum_probs=7.5
Q ss_pred eccccceeee
Q 032479 5 EMNDRKKIGL 14 (140)
Q Consensus 5 ~~~d~qkiGv 14 (140)
.+|+.|+||+
T Consensus 40 ~Ln~~Q~iGL 49 (57)
T d2bcqa2 40 SLTTQQAIGL 49 (57)
T ss_dssp CCCHHHHHHH
T ss_pred CCCHHHHHhH
Confidence 3788888875
No 9
>d2qtva1 a.71.2.1 (A:524-626) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=5.75 E-value=1.5e+02 Score=19.38 Aligned_cols=24 Identities=21% Similarity=0.494 Sum_probs=19.7
Q ss_pred cchHHHHHhhhhCCccccccccch
Q 032479 102 GFWPTLSVFLQRIPILGWLFQQPF 125 (140)
Q Consensus 102 ~F~P~i~~fl~~~P~ig~il~~P~ 125 (140)
+.+|..+-.|||.|+++..=++|=
T Consensus 58 s~~PqfmfhLRRS~flqvfN~SPD 81 (103)
T d2qtva1 58 SLYPQFTYYLRRSQFLSVFNNSPD 81 (103)
T ss_dssp TTHHHHHHHHHTSTTTCCTTCCHH
T ss_pred HhhHHHHHHHhhhhhhhccCCCcc
Confidence 468999999999999976556774
No 10
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=5.73 E-value=74 Score=21.28 Aligned_cols=33 Identities=18% Similarity=0.099 Sum_probs=20.5
Q ss_pred HHHHHhhhhCCccccccccchHHHHHHHhcCCC
Q 032479 105 PTLSVFLQRIPILGWLFQQPFVRSFFDRYRSRR 137 (140)
Q Consensus 105 P~i~~fl~~~P~ig~il~~P~i~~~~~~l~~~~ 137 (140)
+.-++.+-.+..++..+-.|....+.||...++
T Consensus 42 ~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~ 74 (417)
T d1pv7a_ 42 KSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRK 74 (417)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchH
Confidence 344455555555566666677778888876554
Done!