BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 032480
         (140 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4A6Q|A Chain A, Crystal Structure Of Mouse Sap18 Residues 6-143
          Length = 143

 Score =  102 bits (254), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 50/92 (54%), Positives = 62/92 (67%), Gaps = 1/92 (1%)

Query: 35  EPVDREKTCPLLLRVFTKIGGHHSREDFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVA 94
           +P+DREKTCPLLLRVFT   G H R D   RG  P  E+QIYTW DATL+ELT LVKEV 
Sbjct: 18  KPIDREKTCPLLLRVFTTNNGRHHRXDEFSRGNVPSSELQIYTWXDATLKELTSLVKEVY 77

Query: 95  PAARRRDARLSFAFVYPD-KNGRFMVREVSHS 125
           P AR++    +FA V+ D K   + V+E+  +
Sbjct: 78  PEARKKGTHFNFAIVFXDLKRPGYRVKEIGST 109


>pdb|4A90|A Chain A, Crystal Structure Of Mouse Sap18 Residues 1-143
 pdb|4A90|B Chain B, Crystal Structure Of Mouse Sap18 Residues 1-143
          Length = 143

 Score =  102 bits (253), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 50/92 (54%), Positives = 62/92 (67%), Gaps = 1/92 (1%)

Query: 35  EPVDREKTCPLLLRVFTKIGGHHSREDFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVA 94
           +P+DREKTCPLLLRVFT   G H R D   RG  P  E+QIYTW DATL+ELT LVKEV 
Sbjct: 18  KPIDREKTCPLLLRVFTTNNGRHHRMDEFSRGNVPSSELQIYTWMDATLKELTSLVKEVY 77

Query: 95  PAARRRDARLSFAFVYPD-KNGRFMVREVSHS 125
           P AR++    +FA V+ D K   + V+E+  +
Sbjct: 78  PEARKKGTHFNFAIVFMDLKRPGYRVKEIGST 109


>pdb|4A8X|C Chain C, Structure Of The Core Asap Complex
          Length = 130

 Score =  101 bits (252), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 50/92 (54%), Positives = 62/92 (67%), Gaps = 1/92 (1%)

Query: 35  EPVDREKTCPLLLRVFTKIGGHHSREDFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVA 94
           +P+DREKTCPLLLRVFT   G H R D   RG  P  E+QIYTW DATL+ELT LVKEV 
Sbjct: 5   KPIDREKTCPLLLRVFTTNNGRHHRMDEFSRGNVPSSELQIYTWMDATLKELTSLVKEVY 64

Query: 95  PAARRRDARLSFAFVYPD-KNGRFMVREVSHS 125
           P AR++    +FA V+ D K   + V+E+  +
Sbjct: 65  PEARKKGTHFNFAIVFMDLKRPGYRVKEIGST 96


>pdb|2HDE|A Chain A, Solution Structure Of Human Sap18
          Length = 148

 Score = 98.2 bits (243), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 49/92 (53%), Positives = 61/92 (66%), Gaps = 1/92 (1%)

Query: 35  EPVDREKTCPLLLRVFTKIGGHHSREDFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVA 94
           +P+DREKT PLLLRVFT   G H R D   RG  P  E+QIYTW DATL+ELT LVKEV 
Sbjct: 17  KPIDREKTSPLLLRVFTTNNGRHHRMDEFSRGNVPSSELQIYTWMDATLKELTSLVKEVY 76

Query: 95  PAARRRDARLSFAFVYPD-KNGRFMVREVSHS 125
           P AR++    +FA V+ D K   + V+E+  +
Sbjct: 77  PEARKKGTHFNFAIVFTDVKRPGYRVKEIGST 108


>pdb|1V8B|A Chain A, Crystal Structure Of A Hydrolase
 pdb|1V8B|B Chain B, Crystal Structure Of A Hydrolase
 pdb|1V8B|C Chain C, Crystal Structure Of A Hydrolase
 pdb|1V8B|D Chain D, Crystal Structure Of A Hydrolase
          Length = 479

 Score = 29.3 bits (64), Expect = 0.76,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 8/51 (15%)

Query: 43  CPLLLRVFTKIGGH--------HSREDFAVRGKEPKDEVQIYTWKDATLRE 85
           C LL+    K+G          +S  D+A       + V ++ WK+ TL E
Sbjct: 59  CALLIETLQKLGAQIRWCSCNIYSTADYAAAAVSTLENVTVFAWKNETLEE 109


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.134    0.393 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,450,418
Number of Sequences: 62578
Number of extensions: 114421
Number of successful extensions: 279
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 272
Number of HSP's gapped (non-prelim): 12
length of query: 140
length of database: 14,973,337
effective HSP length: 89
effective length of query: 51
effective length of database: 9,403,895
effective search space: 479598645
effective search space used: 479598645
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 46 (22.3 bits)