BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032480
(140 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O64644|SAP18_ARATH Histone deacetylase complex subunit SAP18 OS=Arabidopsis thaliana
GN=At2g45640 PE=1 SV=1
Length = 152
Score = 165 bits (417), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 78/97 (80%), Positives = 87/97 (89%)
Query: 29 PPRPRFEPVDREKTCPLLLRVFTKIGGHHSREDFAVRGKEPKDEVQIYTWKDATLRELTD 88
PPRP+ EPVDREKTCPLLLRVFTK GGHH+ ED+AVRGKEPKDEVQIYTWKDA+LRELTD
Sbjct: 25 PPRPKPEPVDREKTCPLLLRVFTKSGGHHTSEDYAVRGKEPKDEVQIYTWKDASLRELTD 84
Query: 89 LVKEVAPAARRRDARLSFAFVYPDKNGRFMVREVSHS 125
LVKEV+ AARRR+ARLSFAFVYP+ G + VREV +
Sbjct: 85 LVKEVSVAARRRNARLSFAFVYPNNKGGYNVREVGET 121
>sp|Q3T022|SAP18_BOVIN Histone deacetylase complex subunit SAP18 OS=Bos taurus GN=SAP18
PE=2 SV=1
Length = 153
Score = 101 bits (252), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 50/92 (54%), Positives = 62/92 (67%), Gaps = 1/92 (1%)
Query: 35 EPVDREKTCPLLLRVFTKIGGHHSREDFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVA 94
+P+DREKTCPLLLRVFT G H R D RG P E+QIYTW DATL+ELT LVKEV
Sbjct: 18 KPIDREKTCPLLLRVFTTNNGRHHRMDEFSRGNVPSSELQIYTWMDATLKELTSLVKEVY 77
Query: 95 PAARRRDARLSFAFVYPD-KNGRFMVREVSHS 125
P AR++ +FA V+ D K + V+E+ +
Sbjct: 78 PEARKKGTHFNFAIVFTDLKRPGYRVKEIGST 109
>sp|Q5RDT5|SAP18_PONAB Histone deacetylase complex subunit SAP18 OS=Pongo abelii GN=SAP18
PE=2 SV=1
Length = 153
Score = 101 bits (252), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 50/92 (54%), Positives = 62/92 (67%), Gaps = 1/92 (1%)
Query: 35 EPVDREKTCPLLLRVFTKIGGHHSREDFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVA 94
+P+DREKTCPLLLRVFT G H R D RG P E+QIYTW DATL+ELT LVKEV
Sbjct: 18 KPIDREKTCPLLLRVFTTNNGRHHRMDEFSRGNVPSSELQIYTWMDATLKELTSLVKEVY 77
Query: 95 PAARRRDARLSFAFVYPD-KNGRFMVREVSHS 125
P AR++ +FA V+ D K + V+E+ +
Sbjct: 78 PEARKKGTHFNFAIVFTDVKRPGYRVKEIGST 109
>sp|O00422|SAP18_HUMAN Histone deacetylase complex subunit SAP18 OS=Homo sapiens GN=SAP18
PE=1 SV=1
Length = 153
Score = 101 bits (252), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 50/92 (54%), Positives = 62/92 (67%), Gaps = 1/92 (1%)
Query: 35 EPVDREKTCPLLLRVFTKIGGHHSREDFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVA 94
+P+DREKTCPLLLRVFT G H R D RG P E+QIYTW DATL+ELT LVKEV
Sbjct: 18 KPIDREKTCPLLLRVFTTNNGRHHRMDEFSRGNVPSSELQIYTWMDATLKELTSLVKEVY 77
Query: 95 PAARRRDARLSFAFVYPD-KNGRFMVREVSHS 125
P AR++ +FA V+ D K + V+E+ +
Sbjct: 78 PEARKKGTHFNFAIVFTDVKRPGYRVKEIGST 109
>sp|O55128|SAP18_MOUSE Histone deacetylase complex subunit SAP18 OS=Mus musculus GN=Sap18
PE=1 SV=1
Length = 153
Score = 101 bits (251), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 50/92 (54%), Positives = 62/92 (67%), Gaps = 1/92 (1%)
Query: 35 EPVDREKTCPLLLRVFTKIGGHHSREDFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVA 94
+P+DREKTCPLLLRVFT G H R D RG P E+QIYTW DATL+ELT LVKEV
Sbjct: 18 KPIDREKTCPLLLRVFTTNNGRHHRMDEFSRGNVPSSELQIYTWMDATLKELTSLVKEVY 77
Query: 95 PAARRRDARLSFAFVYPD-KNGRFMVREVSHS 125
P AR++ +FA V+ D K + V+E+ +
Sbjct: 78 PEARKKGTHFNFAIVFMDLKRPGYRVKEIGST 109
>sp|Q9VEX9|SAP18_DROME Histone deacetylase complex subunit SAP18 OS=Drosophila
melanogaster GN=Bin1 PE=1 SV=1
Length = 150
Score = 96.3 bits (238), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 44/93 (47%), Positives = 63/93 (67%), Gaps = 2/93 (2%)
Query: 31 RPRFEPVDREKTCPLLLRVFTKIGGHHSREDFAVRGKEPKDEVQIYTWKDATLRELTDLV 90
+ + + +DREKTCP+LLRVF G HHS ++ G P +E+QIYTW+DATL ELT LV
Sbjct: 12 KTQVKQIDREKTCPMLLRVFCSTGRHHSVSEYMF-GNVPTNELQIYTWQDATLHELTSLV 70
Query: 91 KEVAPAARRRDARLSFAFVYPD-KNGRFMVREV 122
++V P R++ FA VYP+ ++ F +RE+
Sbjct: 71 RDVNPDTRKKGTYFDFAVVYPNFRSNHFQMREI 103
>sp|Q09250|SAP18_CAEEL Probable histone deacetylase complex subunit SAP18
OS=Caenorhabditis elegans GN=C16C10.4 PE=3 SV=1
Length = 166
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/95 (43%), Positives = 61/95 (64%), Gaps = 3/95 (3%)
Query: 35 EPVDREKTCPLLLRVFTKIGGHHSREDFAVR--GKEPKDEVQIYTWKDATLRELTDLVKE 92
+P+DREK CP+LLRVF H+ ++ R G P E+Q++TW D +LRELT L+KE
Sbjct: 16 KPLDREKVCPMLLRVFVANNRHNPMSEYNSRNGGSVPPSELQMHTWMDCSLRELTSLIKE 75
Query: 93 VAPAARRRDARLSFAFVYPDKNG-RFMVREVSHSS 126
V P ARR+ FA V D+ R+++R+V +++
Sbjct: 76 VNPDARRKGTTFDFAIVQADRGSPRYILRDVGNTT 110
>sp|A8LB08|RS13_FRASN 30S ribosomal protein S13 OS=Frankia sp. (strain EAN1pec) GN=rpsM
PE=3 SV=1
Length = 126
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 33/79 (41%), Gaps = 11/79 (13%)
Query: 33 RFEPVD--REKTCPLLLRVFTKIGGHHSREDFAVRGKEP--------KDEVQ-IYTWKDA 81
R VD REK + L IG SR+ A G P DEVQ + W DA
Sbjct: 3 RLSGVDLPREKRVEIALTYIFGIGRSRSRDTLAATGVNPDTRVRDLTDDEVQKLREWIDA 62
Query: 82 TLRELTDLVKEVAPAARRR 100
R DL +E+ RR+
Sbjct: 63 NYRVEGDLNREIKQDIRRK 81
>sp|Q0RRP6|RS13_FRAAA 30S ribosomal protein S13 OS=Frankia alni (strain ACN14a) GN=rpsM
PE=3 SV=1
Length = 126
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 34/79 (43%), Gaps = 11/79 (13%)
Query: 33 RFEPVD--REKTCPLLLRVFTKIGGHHSREDFAVRGKEP--------KDE-VQIYTWKDA 81
R VD REK + L IG SRE A G P +DE V++ W DA
Sbjct: 3 RLSGVDLPREKRVEIALTYIFGIGRTRSRETLAATGVNPDTRVRDLSEDEIVRLREWIDA 62
Query: 82 TLRELTDLVKEVAPAARRR 100
R DL +E+ RR+
Sbjct: 63 NYRVEGDLNREIKQDIRRK 81
>sp|Q05431|APX1_ARATH L-ascorbate peroxidase 1, cytosolic OS=Arabidopsis thaliana GN=APX1
PE=1 SV=2
Length = 250
Score = 28.9 bits (63), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 27/66 (40%), Gaps = 3/66 (4%)
Query: 1 MAGVGEAQRRQAGRSRPLHPSGRGPPPPPPRPRFEPVDREKTCPLLLRVFTKIGGHHSRE 60
+AGV A G P HP P PPP R D K C L VF K G ++
Sbjct: 99 LAGV-VAVEVTGGPDIPFHPGREDKPQPPPEGRLP--DATKGCDHLRDVFAKQMGLSDKD 155
Query: 61 DFAVRG 66
A+ G
Sbjct: 156 IVALSG 161
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.136 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,967,621
Number of Sequences: 539616
Number of extensions: 2616267
Number of successful extensions: 23146
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 99
Number of HSP's that attempted gapping in prelim test: 21464
Number of HSP's gapped (non-prelim): 1429
length of query: 140
length of database: 191,569,459
effective HSP length: 105
effective length of query: 35
effective length of database: 134,909,779
effective search space: 4721842265
effective search space used: 4721842265
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)