Query 032480
Match_columns 140
No_of_seqs 108 out of 151
Neff 3.8
Searched_HMMs 29240
Date Tue Mar 26 00:07:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032480.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032480hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a6q_A Histone deacetylase com 100.0 1.5E-48 5.3E-53 300.9 11.8 102 32-137 15-118 (143)
2 1j8c_A Ubiquitin-like protein 91.7 1 3.5E-05 32.3 8.1 65 1-94 1-65 (125)
3 2eki_A DRG 1, developmentally- 49.8 46 0.0016 23.4 5.9 27 79-111 34-60 (93)
4 2pjh_A Protein NPL4, nuclear p 44.4 14 0.00047 24.4 2.4 38 43-97 3-40 (80)
5 1wj0_A Squamosa promoter-bindi 38.4 11 0.00037 24.8 1.0 14 50-63 46-60 (60)
6 3gge_A PDZ domain-containing p 26.0 97 0.0033 21.3 4.4 30 79-113 62-91 (95)
7 1ul5_A SPL7, squamosa promoter 25.6 16 0.00053 25.7 0.1 16 49-64 45-61 (88)
8 1ul4_A SPL4, squamosa promoter 23.7 18 0.00062 25.7 0.2 16 49-64 50-66 (94)
9 3kbg_A 30S ribosomal protein S 14.1 91 0.0031 24.9 2.3 20 103-123 60-79 (213)
10 2qfe_A Calpain-7; C2-like doma 14.1 64 0.0022 23.5 1.3 16 38-53 125-140 (148)
No 1
>4a6q_A Histone deacetylase complex subunit SAP18; transcription, splicing, RNA metabolism, ubiquitin-like; HET: MSE; 1.50A {Mus musculus} PDB: 4a90_A* 2hde_A 4a8x_C
Probab=100.00 E-value=1.5e-48 Score=300.86 Aligned_cols=102 Identities=51% Similarity=0.837 Sum_probs=95.8
Q ss_pred CCCCCCCccCCCCcEEEEeccc-CCCCCCcccccCCCCCCCCeeeeecCCCCHHHHHHHHHHhCccccCCCceEEEEEEe
Q 032480 32 PRFEPVDREKTCPLLLRVFTKI-GGHHSREDFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVAPAARRRDARLSFAFVY 110 (140)
Q Consensus 32 ~~~~~iDRektcPFLLRVF~~~-g~hH~l~eF~~~g~lP~~ElQIYTW~DaTLrELa~LIk~~~P~ar~~gtrlsFr~VY 110 (140)
...++|||||||||||||||++ |+||+++||+ +|++|+||||||||+|||||||++|||+++|++|++||+|+|++||
T Consensus 15 ~~~~~idRektcPfLLRvF~~~ng~hh~~~eF~-~~~~P~~ElQIYTW~daTLrEL~~Lvk~~~p~ar~~gtrl~F~~Vy 93 (143)
T 4a6q_A 15 EPEKPIDREKTCPLLLRVFTTNNGRHHRMDEFS-RGNVPSSELQIYTWMDATLKELTSLVKEVYPEARKKGTHFNFAIVF 93 (143)
T ss_dssp CCCCCCCGGGSCCEEEEEEEESSSSCCCGGGGC-TTCCCSCCEEEEECTTCBHHHHHHHHHHHCGGGGSTTCEEEEEEEE
T ss_pred CCCCCccccCCCCeEEEEEecCCCCCCCHHHcc-CCCCCCceeEEeeCCCCCHHHHHHHHHHhCccccCCCCEEEEEEEc
Confidence 3456799999999999999999 7999999998 5899999999999999999999999999999999999999999999
Q ss_pred cC-CCCCcceeccCCcceEEecCCcccc
Q 032480 111 PD-KNGRFMVREVSHSSLTVSYLGHDQS 137 (140)
Q Consensus 111 pD-~~grf~~rdLG~~~~v~s~~~~~~~ 137 (140)
|| ++|+|++|||| +|++|+++.+.
T Consensus 94 pD~r~~ry~~kdlG---sv~~g~~~~dd 118 (143)
T 4a6q_A 94 MDLKRPGYRVKEIG---STMSGRKGTDD 118 (143)
T ss_dssp ECSSSSSEEEEEEE---EEETTBCCTTT
T ss_pred ccCCCCceeeccCC---EEecCCCCCcc
Confidence 99 56899999999 99999988764
No 2
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=91.69 E-value=1 Score=32.28 Aligned_cols=65 Identities=15% Similarity=0.229 Sum_probs=40.1
Q ss_pred CCCcchhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCcEEEEecccCCCCCCcccccCCCCCCCCeeeeecCC
Q 032480 1 MAGVGEAQRRQAGRSRPLHPSGRGPPPPPPRPRFEPVDREKTCPLLLRVFTKIGGHHSREDFAVRGKEPKDEVQIYTWKD 80 (140)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDRektcPFLLRVF~~~g~hH~l~eF~~~g~lP~~ElQIYTW~D 80 (140)
||+.|| ++..++|-++.++++..+....-+ =.++||++.. . ..+.|-...+
T Consensus 1 ~~~~~~--------~~~~~~~~~~~~~~~~s~~~~~~~------~~m~I~Vk~~--g-------------~~~~l~v~~~ 51 (125)
T 1j8c_A 1 MAENGE--------SSGPPRPSRGPAAAQGSAAAPAEP------KIIKVTVKTP--K-------------EKEEFAVPEN 51 (125)
T ss_dssp CCCSCC--------CCCCCSSCCCSCCCCCSSSCCCCC------CCEEEEEECS--S-------------CEEEEEECTT
T ss_pred CCccCc--------CCCCCChhhCCcCCCCCCcccCCC------CcEEEEEEeC--C-------------eEEEEEECCC
Confidence 666565 666777777765555533333222 2378888762 0 1233445678
Q ss_pred CCHHHHHHHHHHhC
Q 032480 81 ATLRELTDLVKEVA 94 (140)
Q Consensus 81 aTLrELa~LIk~~~ 94 (140)
.|+.+|-..|.+..
T Consensus 52 ~TV~~LK~~I~~~~ 65 (125)
T 1j8c_A 52 SSVQQFKEAISKRF 65 (125)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHH
Confidence 99999999998853
No 3
>2eki_A DRG 1, developmentally-regulated GTP-binding protein 1; protein NEDD3, neural precursor cell expressed developmentally DOWN-regulated protein 3; NMR {Homo sapiens}
Probab=49.78 E-value=46 Score=23.38 Aligned_cols=27 Identities=11% Similarity=0.278 Sum_probs=22.1
Q ss_pred CCCCHHHHHHHHHHhCccccCCCceEEEEEEec
Q 032480 79 KDATLRELTDLVKEVAPAARRRDARLSFAFVYP 111 (140)
Q Consensus 79 ~DaTLrELa~LIk~~~P~ar~~gtrlsFr~VYp 111 (140)
..||..+++..|- +..+-.|.|++|+-
T Consensus 34 ~GsTv~Dfa~~IH------~di~~~fkyA~VwG 60 (93)
T 2eki_A 34 SRTTVEDFCMKIH------KNLIKEFKYALVWG 60 (93)
T ss_dssp TSCCHHHHHHHHC------TTCTTTEEEEEEBS
T ss_pred CCCCHHHHHHHHH------HHHHhhccEEEEec
Confidence 6899999999663 46677899999976
No 4
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=44.40 E-value=14 Score=24.44 Aligned_cols=38 Identities=16% Similarity=0.074 Sum_probs=27.9
Q ss_pred CCcEEEEecccCCCCCCcccccCCCCCCCCeeeeecCCCCHHHHHHHHHHhCccc
Q 032480 43 CPLLLRVFTKIGGHHSREDFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVAPAA 97 (140)
Q Consensus 43 cPFLLRVF~~~g~hH~l~eF~~~g~lP~~ElQIYTW~DaTLrELa~LIk~~~P~a 97 (140)
.+++|||..+.|.+ +++ ++ .++|+.||-..|.+..+-.
T Consensus 3 ~~m~lRvrs~~G~~-Ri~-------v~---------~~~t~~~L~~~I~~~~~i~ 40 (80)
T 2pjh_A 3 ESIIIRVQSPDGVK-RIT-------AT---------KRETAATFLKKVAKEFGFQ 40 (80)
T ss_dssp CCCCCEEECSSEEE-ECC-------CC---------SSCCHHHHHHHHHHHTCCC
T ss_pred CcEEEEEECCCCCE-EEE-------cC---------CcChHHHHHHHHHHHcCCC
Confidence 46899999988643 332 22 5789999999999987643
No 5
>1wj0_A Squamosa promoter-binding protein-like 12; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.72.1.1
Probab=38.40 E-value=11 Score=24.78 Aligned_cols=14 Identities=29% Similarity=0.506 Sum_probs=11.6
Q ss_pred eccc-CCCCCCcccc
Q 032480 50 FTKI-GGHHSREDFA 63 (140)
Q Consensus 50 F~~~-g~hH~l~eF~ 63 (140)
|+++ ++||.|+||+
T Consensus 46 FCQQCsrFH~L~eFD 60 (60)
T 1wj0_A 46 FCQQCSRFHVLEEFD 60 (60)
T ss_dssp CCSSSCSCCBTTSCC
T ss_pred hhhhccCccCcccCC
Confidence 6664 8999999996
No 6
>3gge_A PDZ domain-containing protein GIPC2; structural genomics, structural genomics consort protein binding; 2.60A {Homo sapiens}
Probab=25.97 E-value=97 Score=21.34 Aligned_cols=30 Identities=13% Similarity=0.325 Sum_probs=25.2
Q ss_pred CCCCHHHHHHHHHHhCccccCCCceEEEEEEecCC
Q 032480 79 KDATLRELTDLVKEVAPAARRRDARLSFAFVYPDK 113 (140)
Q Consensus 79 ~DaTLrELa~LIk~~~P~ar~~gtrlsFr~VYpD~ 113 (140)
..+|..|++.+||+. ..|..|.+++|=|.+
T Consensus 62 ~g~~h~evv~lLk~~-----~~g~~~~L~lv~p~~ 91 (95)
T 3gge_A 62 VGWRHYDVAKKLKEL-----KKEELFTMKLIEPKK 91 (95)
T ss_dssp TTCCHHHHHHHHHHS-----CTTCEEEEEEEEECS
T ss_pred cCCCHHHHHHHHHhC-----CCCCEEEEEEECccc
Confidence 467899999999984 678899999998843
No 7
>1ul5_A SPL7, squamosa promoter binding protein-like 7; transcription factor, SBP, flower development, DNA binding protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.72.1.1
Probab=25.62 E-value=16 Score=25.74 Aligned_cols=16 Identities=25% Similarity=0.382 Sum_probs=13.2
Q ss_pred Eeccc-CCCCCCccccc
Q 032480 49 VFTKI-GGHHSREDFAV 64 (140)
Q Consensus 49 VF~~~-g~hH~l~eF~~ 64 (140)
=|+++ ++||.|+||+.
T Consensus 45 RFCQQC~rFH~L~eFD~ 61 (88)
T 1ul5_A 45 RYCQQCGKFHLLPDFDE 61 (88)
T ss_dssp EECTTTSSEEEGGGBCS
T ss_pred HHHHHhccccChhhhcc
Confidence 47765 89999999994
No 8
>1ul4_A SPL4, squamosa promoter binding protein-like 4; transcription factor, SBP, flower development, DNA binding protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.72.1.1
Probab=23.67 E-value=18 Score=25.70 Aligned_cols=16 Identities=19% Similarity=0.353 Sum_probs=13.1
Q ss_pred Eeccc-CCCCCCccccc
Q 032480 49 VFTKI-GGHHSREDFAV 64 (140)
Q Consensus 49 VF~~~-g~hH~l~eF~~ 64 (140)
=|+++ ++||.|+||+.
T Consensus 50 RFCQQCsrFH~L~eFD~ 66 (94)
T 1ul4_A 50 RFCQQCSRFHDLQEFDE 66 (94)
T ss_dssp EECTTTSSEEETTTCCS
T ss_pred HHHHHHhccCCHHHhcc
Confidence 46665 89999999994
No 9
>3kbg_A 30S ribosomal protein S4E; RPS4E, RS4E_theac, TAR28, NESG, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.75A {Thermoplasma acidophilum}
Probab=14.09 E-value=91 Score=24.87 Aligned_cols=20 Identities=20% Similarity=0.469 Sum_probs=16.1
Q ss_pred eEEEEEEecCCCCCcceeccC
Q 032480 103 RLSFAFVYPDKNGRFMVREVS 123 (140)
Q Consensus 103 rlsFr~VYpD~~grf~~rdLG 123 (140)
-=.|+++| |.+|+|....|-
T Consensus 60 ~e~fRli~-d~kGrf~~~~I~ 79 (213)
T 3kbg_A 60 GESYRVVY-NDQGALVLMKET 79 (213)
T ss_dssp TEEEEEEE-CTTSCEEEEECC
T ss_pred CceeEEEe-cCCCcEEEEEeC
Confidence 34899999 999999886653
No 10
>2qfe_A Calpain-7; C2-like domain, hydrolase, nuclear protein, protease, thiol protease; 1.45A {Homo sapiens}
Probab=14.07 E-value=64 Score=23.51 Aligned_cols=16 Identities=19% Similarity=0.239 Sum_probs=0.0
Q ss_pred CccCCCCcEEEEeccc
Q 032480 38 DREKTCPLLLRVFTKI 53 (140)
Q Consensus 38 DRektcPFLLRVF~~~ 53 (140)
+-.+...|+||||...
T Consensus 125 ~P~~eg~F~LrVfs~~ 140 (148)
T 2qfe_A 125 LPKQEGPFFLDFNSII 140 (148)
T ss_dssp STTCCEEEEEEEEESS
T ss_pred CCCCccceEEEEEeCC
Done!