Query 032480
Match_columns 140
No_of_seqs 108 out of 151
Neff 3.8
Searched_HMMs 13730
Date Tue Mar 26 00:07:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032480.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/032480hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1j8ca_ d.15.1.1 (A:) Ubiquiti 77.3 6.6 0.00048 25.2 7.6 39 41-94 27-65 (103)
2 d1y4ta_ c.94.1.1 (A:) Ferric-b 58.6 4 0.00029 28.7 3.4 22 71-92 1-23 (317)
3 d1wj0a_ g.72.1.1 (A:) Squamosa 35.8 5.9 0.00043 24.5 1.0 14 50-63 44-58 (58)
4 d1yqba1 d.15.1.1 (A:15-98) Ubi 27.0 43 0.0031 20.2 4.2 37 43-94 4-40 (84)
5 d1wiia_ g.41.3.4 (A:) Hypothet 26.2 27 0.0019 22.7 3.1 20 26-45 9-28 (85)
6 d1x9na2 b.40.4.6 (A:754-901) D 23.9 15 0.0011 24.7 1.6 17 77-93 130-147 (148)
7 d1ul4a_ g.72.1.1 (A:) Squamosa 23.9 8.5 0.00062 25.1 0.2 16 49-64 43-59 (81)
8 d1qs0b1 c.36.1.7 (B:2-205) 2-o 22.2 78 0.0057 22.6 5.5 53 39-95 108-164 (204)
9 d1sr9a2 c.1.10.5 (A:61-370) 2- 21.9 6.3 0.00046 28.3 -0.9 13 77-89 13-25 (310)
10 d1ul5a_ g.72.1.1 (A:) Squamosa 21.8 9.6 0.0007 25.1 0.1 17 48-64 42-59 (86)
No 1
>d1j8ca_ d.15.1.1 (A:) Ubiquitin-like N-terminal domain of PLIC-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=77.34 E-value=6.6 Score=25.25 Aligned_cols=39 Identities=8% Similarity=0.208 Sum_probs=28.1
Q ss_pred CCCCcEEEEecccCCCCCCcccccCCCCCCCCeeeeecCCCCHHHHHHHHHHhC
Q 032480 41 KTCPLLLRVFTKIGGHHSREDFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVA 94 (140)
Q Consensus 41 ktcPFLLRVF~~~g~hH~l~eF~~~g~lP~~ElQIYTW~DaTLrELa~LIk~~~ 94 (140)
..-|-+++|++++.. +...|-.+.+.|+.||-..|.+..
T Consensus 27 ~~~~~~i~V~Vk~~~---------------~~~~i~V~~~~tV~~LK~~I~~~~ 65 (103)
T d1j8ca_ 27 PAEPKIIKVTVKTPK---------------EKEEFAVPENSSVQQFKEAISKRF 65 (103)
T ss_dssp CCCCCCEEEEEECSS---------------CEEEEEECTTCCHHHHHHHHHHHH
T ss_pred CCCCCeEEEEEECCC---------------ccEEEEECCCChHHHHHHHHHHHH
Confidence 346778999998621 123355678999999999999853
No 2
>d1y4ta_ c.94.1.1 (A:) Ferric-binding protein FbpA {Campylobacter jejuni [TaxId: 197]}
Probab=58.57 E-value=4 Score=28.67 Aligned_cols=22 Identities=23% Similarity=0.341 Sum_probs=16.2
Q ss_pred CCeeeeecCCCCH-HHHHHHHHH
Q 032480 71 DEVQIYTWKDATL-RELTDLVKE 92 (140)
Q Consensus 71 ~ElQIYTW~DaTL-rELa~LIk~ 92 (140)
.||.||+|.|-+. .||..-..+
T Consensus 1 ~ev~iy~~~~~~~~~~i~~~Fek 23 (317)
T d1y4ta_ 1 SELNIYSARHYNADFEIIKKFEE 23 (317)
T ss_dssp CCEEEEECCCCTHHHHHHHHHHH
T ss_pred CeEEEEeCCCcchHHHHHHHHHH
Confidence 3999999999977 466554443
No 3
>d1wj0a_ g.72.1.1 (A:) Squamosa-promoter binding-like protein 12, DNA-binding domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=35.79 E-value=5.9 Score=24.47 Aligned_cols=14 Identities=29% Similarity=0.506 Sum_probs=11.5
Q ss_pred eccc-CCCCCCcccc
Q 032480 50 FTKI-GGHHSREDFA 63 (140)
Q Consensus 50 F~~~-g~hH~l~eF~ 63 (140)
|+++ ++||.|+||+
T Consensus 44 FCQQCsrFH~L~eFD 58 (58)
T d1wj0a_ 44 FCQQCSRFHVLEEFD 58 (58)
T ss_dssp CCSSSCSCCBTTSCC
T ss_pred cccccCCcccccccC
Confidence 6654 8899999996
No 4
>d1yqba1 d.15.1.1 (A:15-98) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.05 E-value=43 Score=20.22 Aligned_cols=37 Identities=19% Similarity=0.281 Sum_probs=27.5
Q ss_pred CCcEEEEecccCCCCCCcccccCCCCCCCCeeeeecCCCCHHHHHHHHHHhC
Q 032480 43 CPLLLRVFTKIGGHHSREDFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVA 94 (140)
Q Consensus 43 cPFLLRVF~~~g~hH~l~eF~~~g~lP~~ElQIYTW~DaTLrELa~LIk~~~ 94 (140)
-|..++|++++.. +...|....+.|+.||-..|.+..
T Consensus 4 ~~~~i~I~Vkt~~---------------~~~~~~V~~~~tV~~lK~~i~~~~ 40 (84)
T d1yqba1 4 SPHLIKVTVKTPK---------------DKEDFSVTDTCTIQQLKEEISQRF 40 (84)
T ss_dssp CTTEEEEEEECSS---------------CEEEEEEETTCBHHHHHHHHHHHH
T ss_pred CCCEEEEEEEcCC---------------CcEEEEECCCCcHHHHHHHHHHHH
Confidence 5778999998732 123455678999999999998753
No 5
>d1wiia_ g.41.3.4 (A:) Hypothetical UPF0222 protein MGC4549 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=26.15 E-value=27 Score=22.72 Aligned_cols=20 Identities=30% Similarity=0.756 Sum_probs=14.8
Q ss_pred CCCCCCCCCCCCCccCCCCc
Q 032480 26 PPPPPRPRFEPVDREKTCPL 45 (140)
Q Consensus 26 ~~~~~~~~~~~iDRektcPF 45 (140)
.|||......++|..-+|||
T Consensus 9 k~~pkkk~~~kL~t~F~CPf 28 (85)
T d1wiia_ 9 KPPPKKKMTGTLETQFTCPF 28 (85)
T ss_dssp CCCCCCCCCCCCSSCCCCTT
T ss_pred CCCCCccccCCCCceEcCCC
Confidence 34444555678999999999
No 6
>d1x9na2 b.40.4.6 (A:754-901) DNA ligase I (LIG1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.92 E-value=15 Score=24.70 Aligned_cols=17 Identities=18% Similarity=0.110 Sum_probs=14.3
Q ss_pred ecCCC-CHHHHHHHHHHh
Q 032480 77 TWKDA-TLRELTDLVKEV 93 (140)
Q Consensus 77 TW~Da-TLrELa~LIk~~ 93 (140)
+|.|| |+.||..|++..
T Consensus 130 ~~~e~~t~~~l~~l~~~Q 147 (148)
T d1x9na2 130 QPEQATTSAQVACLYRKQ 147 (148)
T ss_dssp CGGGSCBHHHHHHHHHHH
T ss_pred ChHHCcCHHHHHHHHHhc
Confidence 57888 999999998764
No 7
>d1ul4a_ g.72.1.1 (A:) Squamosa promoter binding protein-like 4, DNA-binding domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=23.86 E-value=8.5 Score=25.14 Aligned_cols=16 Identities=19% Similarity=0.370 Sum_probs=12.7
Q ss_pred Eecc-cCCCCCCccccc
Q 032480 49 VFTK-IGGHHSREDFAV 64 (140)
Q Consensus 49 VF~~-~g~hH~l~eF~~ 64 (140)
=|++ =++||.|+||+.
T Consensus 43 RfCQqC~rFH~L~eFD~ 59 (81)
T d1ul4a_ 43 RFCQQCSRFHDLQEFDE 59 (81)
T ss_dssp EECTTTSSEEETTTCCS
T ss_pred hHHHHhcccccHHHhcc
Confidence 3555 599999999994
No 8
>d1qs0b1 c.36.1.7 (B:2-205) 2-oxoisovalerate dehydrogenase (E1B), Pyr module {Pseudomonas putida [TaxId: 303]}
Probab=22.20 E-value=78 Score=22.59 Aligned_cols=53 Identities=19% Similarity=0.108 Sum_probs=40.0
Q ss_pred ccCCCCcEEEEecc----cCCCCCCcccccCCCCCCCCeeeeecCCCCHHHHHHHHHHhCc
Q 032480 39 REKTCPLLLRVFTK----IGGHHSREDFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVAP 95 (140)
Q Consensus 39 RektcPFLLRVF~~----~g~hH~l~eF~~~g~lP~~ElQIYTW~DaTLrELa~LIk~~~P 95 (140)
....||+++|.=.- .|.||+.++.+--..+| -|.|+. =+|..|...|++.+..
T Consensus 108 ~~~~~p~vir~~~g~~~~~g~~Hs~~~~s~~~~iP--gl~Vv~--Ps~~~da~~ll~~a~~ 164 (204)
T d1qs0b1 108 GEFIAPLTLRMPCGGGIYGGQTHSQSPEAMFTQVC--GLRTVM--PSNPYDAKGLLIASIE 164 (204)
T ss_dssp TSSCCCCEEEEEECCSSSCCSSSSCCCHHHHTTST--TCEEEC--CCSHHHHHHHHHHHHH
T ss_pred cCcccceEEEcCcccccCcccccccCHHHHHhcCC--CcEEEe--eCCHHHHHHHHHHHHh
Confidence 45679999997542 36799988877545678 577774 5789999999999643
No 9
>d1sr9a2 c.1.10.5 (A:61-370) 2-isopropylmalate synthase LeuA, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=21.85 E-value=6.3 Score=28.32 Aligned_cols=13 Identities=23% Similarity=0.440 Sum_probs=10.1
Q ss_pred ecCCCCHHHHHHH
Q 032480 77 TWKDATLRELTDL 89 (140)
Q Consensus 77 TW~DaTLrELa~L 89 (140)
+|+|+||||=.+-
T Consensus 13 ~~~D~tLRDG~Q~ 25 (310)
T d1sr9a2 13 LWCAVDLRDGNQA 25 (310)
T ss_dssp EEEECTTTHHHHT
T ss_pred eeeECCCCccCcC
Confidence 7889999985543
No 10
>d1ul5a_ g.72.1.1 (A:) Squamosa promoter binding protein-like 7, DNA-binding domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=21.84 E-value=9.6 Score=25.14 Aligned_cols=17 Identities=24% Similarity=0.413 Sum_probs=13.5
Q ss_pred EEeccc-CCCCCCccccc
Q 032480 48 RVFTKI-GGHHSREDFAV 64 (140)
Q Consensus 48 RVF~~~-g~hH~l~eF~~ 64 (140)
.-|+++ ++||.|+||+.
T Consensus 42 ~RfCQqC~rFH~L~eFD~ 59 (86)
T d1ul5a_ 42 KRYCQQCGKFHLLPDFDE 59 (86)
T ss_dssp EEECTTTSSEEEGGGBCS
T ss_pred chHHHHhccccChhhhcc
Confidence 347664 89999999994
Done!