Query 032481
Match_columns 140
No_of_seqs 107 out of 499
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 14:38:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032481.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032481hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1278 Endosomal membrane pro 100.0 5.3E-53 1.2E-57 364.4 11.7 140 1-140 405-544 (628)
2 PF02990 EMP70: Endomembrane p 100.0 2.9E-45 6.3E-50 319.0 7.7 140 1-140 339-479 (521)
3 KOG1277 Endosomal membrane pro 100.0 1.2E-42 2.7E-47 295.4 10.9 140 1-140 369-509 (593)
4 PF12823 DUF3817: Domain of un 77.1 1.1 2.5E-05 30.9 0.9 27 74-100 61-87 (92)
5 PRK09546 zntB zinc transporter 53.7 22 0.00048 29.2 4.2 29 29-57 261-289 (324)
6 TIGR00383 corA magnesium Mg(2+ 36.1 56 0.0012 26.4 3.9 29 28-56 254-282 (318)
7 PF01544 CorA: CorA-like Mg2+ 29.9 48 0.001 25.9 2.5 33 25-57 227-259 (292)
8 PF06210 DUF1003: Protein of u 28.4 1.8E+02 0.0039 20.5 5.0 46 4-49 11-56 (108)
9 PRK11085 magnesium/nickel/coba 26.4 1.2E+02 0.0026 25.3 4.4 36 21-56 245-280 (316)
10 KOG1134 Uncharacterized conser 25.3 3.5E+02 0.0075 25.5 7.5 55 29-94 362-417 (728)
11 COG4420 Predicted membrane pro 24.9 2.4E+02 0.0053 22.2 5.5 46 4-49 65-110 (191)
12 PF12962 DUF3851: Protein of u 23.6 69 0.0015 23.2 2.1 18 94-111 104-121 (124)
13 COG0598 CorA Mg2+ and Co2+ tra 22.6 1.5E+02 0.0032 24.4 4.2 32 26-57 256-287 (322)
14 PF09605 Trep_Strep: Hypotheti 20.3 68 0.0015 24.5 1.7 27 34-60 157-185 (186)
No 1
>KOG1278 consensus Endosomal membrane proteins, EMP70 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.3e-53 Score=364.45 Aligned_cols=140 Identities=79% Similarity=1.461 Sum_probs=138.4
Q ss_pred CcchHHHHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHhhhhhhhhhhhhccCCCCCCCcccCCCCCCCCCCCCccc
Q 032481 1 MFPGICFAIFFVLNALIWGEKSSGAVPFATMFALVFLWFGISIPLVFVGSYIGFKKPAIEDPVKTNKIPRQILEQPWYMN 80 (140)
Q Consensus 1 ~~P~~~~~~~~ilN~i~w~~~Ss~aipf~ti~~l~~lw~~vsiPL~~~G~~~g~k~~~~~~P~~~n~ipR~IP~~p~y~~ 80 (140)
++||+++++.+++|+++|++|||+|+||+|++.++++|+++|+||+++|+++|+|++++|+|+||||||||||+||||+|
T Consensus 405 l~PGivf~~~f~lN~~lW~~~SSgAvPF~T~~~ll~LwF~isVPLsf~G~y~g~kk~~~e~PvrTNqIpRqIP~q~~y~~ 484 (628)
T KOG1278|consen 405 LFPGIVFAIFFVLNFFLWGKHSSGAVPFSTMVALLFLWFGISVPLSFVGGYFGFKKPAIEHPVRTNQIPRQIPEQPWYLN 484 (628)
T ss_pred hcchHHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHHHhhhhHHHhhHHhhccCCCCCCCcccCCCcccCCCCccccc
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhcccccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhhheeEEeeC
Q 032481 81 PIFSILIGGILPFGAIFIELFFILTSIWLHQFYYLFGFLLLVFLILIVTCVEITIVLCYF 140 (140)
Q Consensus 81 ~~~~~~~~G~lPF~~i~vEl~~i~~slW~~~~yy~fgfL~~~~iil~i~~a~vsIi~~Y~ 140 (140)
+...+++||++||++|++||+||++|+|.||+||+||||+++++||+++|+|+||++||+
T Consensus 485 ~~~~ili~GilPFg~ifIELfFI~~SiW~~qfYY~FGFLFlvfiiLvvtcaeisIvl~Yf 544 (628)
T KOG1278|consen 485 PIPSILIAGILPFGAIFIELFFILSSIWLNQFYYMFGFLFLVFIILVVTCAEISIVLTYF 544 (628)
T ss_pred hhhHHHhhcccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999995
No 2
>PF02990 EMP70: Endomembrane protein 70; InterPro: IPR004240 The transmembrane 9 superfamily protein (TM9SF) may function as a channel or small molecule transporter. Proteins in this group are endosomal integral membrane proteins.; GO: 0016021 integral to membrane
Probab=100.00 E-value=2.9e-45 Score=319.04 Aligned_cols=140 Identities=64% Similarity=1.302 Sum_probs=137.4
Q ss_pred CcchHHHHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHhhhhhhhhhhhhccCCCC-CCCcccCCCCCCCCCCCCcc
Q 032481 1 MFPGICFAIFFVLNALIWGEKSSGAVPFATMFALVFLWFGISIPLVFVGSYIGFKKPAI-EDPVKTNKIPRQILEQPWYM 79 (140)
Q Consensus 1 ~~P~~~~~~~~ilN~i~w~~~Ss~aipf~ti~~l~~lw~~vsiPL~~~G~~~g~k~~~~-~~P~~~n~ipR~IP~~p~y~ 79 (140)
++|++++++++++|+++|.+|||+|+||+|++.++++|++||+||+++||++|+|+++. |+|||+||+||+||+||||+
T Consensus 339 ~~P~~~~~~~~~~n~i~~~~~ss~aipf~t~~~l~~lw~~v~~PL~~lG~~~g~k~~~~~~~p~~~n~ipR~IP~~~~y~ 418 (521)
T PF02990_consen 339 LFPGILFSIFFILNFIAWSYGSSSAIPFGTILFLIALWFFVSIPLTFLGGYFGFKNPPIDEFPCRTNQIPRQIPPQPWYL 418 (521)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHhhhhhhcchhhhcCccccccCCcCCCCCCCcCCCCcccc
Confidence 47999999999999999999999999999999999999999999999999999998888 99999999999999999999
Q ss_pred chhhhhhcccccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhhheeEEeeC
Q 032481 80 NPIFSILIGGILPFGAIFIELFFILTSIWLHQFYYLFGFLLLVFLILIVTCVEITIVLCYF 140 (140)
Q Consensus 80 ~~~~~~~~~G~lPF~~i~vEl~~i~~slW~~~~yy~fgfL~~~~iil~i~~a~vsIi~~Y~ 140 (140)
++...++++|++||+++++|++|+++|+|.+|+||+||||++++++++++|||+||+.||+
T Consensus 419 ~~~~~~l~~G~lPF~~i~iEl~~i~~s~W~~~~y~~fgfl~~~~~ll~i~~a~vsI~~tY~ 479 (521)
T PF02990_consen 419 SPFFSILIGGILPFGAIFIELYFIFSSLWSNKFYYLFGFLLLVFILLIITCAEVSIILTYF 479 (521)
T ss_pred CCccceeecchHHHHHHHHHHHHHHHHhhcCcceEEehHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999984
No 3
>KOG1277 consensus Endosomal membrane proteins, EMP70 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.2e-42 Score=295.40 Aligned_cols=140 Identities=40% Similarity=0.883 Sum_probs=136.5
Q ss_pred CcchHHHHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHhhhhhhhhhhhhcc-CCCCCCCcccCCCCCCCCCCCCcc
Q 032481 1 MFPGICFAIFFVLNALIWGEKSSGAVPFATMFALVFLWFGISIPLVFVGSYIGFK-KPAIEDPVKTNKIPRQILEQPWYM 79 (140)
Q Consensus 1 ~~P~~~~~~~~ilN~i~w~~~Ss~aipf~ti~~l~~lw~~vsiPL~~~G~~~g~k-~~~~~~P~~~n~ipR~IP~~p~y~ 79 (140)
++|+++++..+++|+++|+++|++|+||+|++.+.++|++|..||+.+|++.|++ +.++++|||++++||+||++|||+
T Consensus 369 Lfp~~~~~t~~~~N~vai~y~at~AlPfgt~v~v~~iw~fv~~PL~~~G~i~GkN~~~~~~~PCR~~~~pR~Ip~~kWy~ 448 (593)
T KOG1277|consen 369 LFPVPVFGTAFLLNTVAIAYGATAALPFGTIVVVLLIWLFVISPLTVLGGIAGKNRSGEFDAPCRTKAIPREIPPKKWYR 448 (593)
T ss_pred hhhHHHHHHHHHHHHHHHHhccccccCccchHHHHHHHHHHhchHHHcccccccccccCCCCCcccccCCCCCCCccccc
Confidence 5899999999999999999999999999999999999999999999999999987 557799999999999999999999
Q ss_pred chhhhhhcccccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhhheeEEeeC
Q 032481 80 NPIFSILIGGILPFGAIFIELFFILTSIWLHQFYYLFGFLLLVFLILIVTCVEITIVLCYF 140 (140)
Q Consensus 80 ~~~~~~~~~G~lPF~~i~vEl~~i~~slW~~~~yy~fgfL~~~~iil~i~~a~vsIi~~Y~ 140 (140)
++.+.+.+||++||++|++|++||++|.|.+|.||+|||++++++||+++++|+||++||+
T Consensus 449 ~~~~~~~~gG~LPFgsIfIEmYfIFtSfW~ykiYyvYgfm~lVf~IL~iVtvcvTIv~TYF 509 (593)
T KOG1277|consen 449 SPLVIMLMGGFLPFGSIFIEMYFIFTSFWGYKIYYVYGFMFLVFVILLIVTVCVTIVLTYF 509 (593)
T ss_pred cchHHHHhhccCccchhhhhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Confidence 9999999999999999999999999999999999999999999999999999999999996
No 4
>PF12823 DUF3817: Domain of unknown function (DUF3817); InterPro: IPR023845 This domain is associated with, strictly bacterial integral membrane proteins. It occurs in proteins that on rare occasions are fused to transporter domains such as the major facilitator superfamily domain. Of three invariant residues, two occur as a His-Gly dipeptide in the middle of three predicted transmembrane helices.
Probab=77.10 E-value=1.1 Score=30.88 Aligned_cols=27 Identities=22% Similarity=0.673 Sum_probs=22.9
Q ss_pred CCCCccchhhhhhcccccchhHHHHHH
Q 032481 74 EQPWYMNPIFSILIGGILPFGAIFIEL 100 (140)
Q Consensus 74 ~~p~y~~~~~~~~~~G~lPF~~i~vEl 100 (140)
+++|-.+.....+++|++||++...|-
T Consensus 61 ~~rW~~~~~~~~llas~iPfg~f~~er 87 (92)
T PF12823_consen 61 KYRWSLKRTLLALLASVIPFGTFWFER 87 (92)
T ss_pred HcCCChHHHHHHHHHHcccccHHHHHH
Confidence 345877888889999999999999884
No 5
>PRK09546 zntB zinc transporter; Reviewed
Probab=53.72 E-value=22 Score=29.21 Aligned_cols=29 Identities=14% Similarity=0.122 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhccCC
Q 032481 29 ATMFALVFLWFGISIPLVFVGSYIGFKKP 57 (140)
Q Consensus 29 ~ti~~l~~lw~~vsiPL~~~G~~~g~k~~ 57 (140)
...+..+..+-.+.+|++++.|++|-+-+
T Consensus 261 N~~m~~Ltilt~IflPlT~IaGiyGMNf~ 289 (324)
T PRK09546 261 NRRTYTMSLMAMVFLPTTFLTGLFGVNLG 289 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccC
Confidence 34555677777788899999999997643
No 6
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=36.14 E-value=56 Score=26.44 Aligned_cols=29 Identities=21% Similarity=0.400 Sum_probs=24.9
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhhhhhccC
Q 032481 28 FATMFALVFLWFGISIPLVFVGSYIGFKK 56 (140)
Q Consensus 28 f~ti~~l~~lw~~vsiPL~~~G~~~g~k~ 56 (140)
-...+..+..|-.+-.|+++++|++|-+-
T Consensus 254 ~N~~mk~LTvvt~IflP~t~IaGiyGMNf 282 (318)
T TIGR00383 254 MNEIMKILTVVSTIFIPLTFIAGIYGMNF 282 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 34577889999999999999999999754
No 7
>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.
Probab=29.90 E-value=48 Score=25.88 Aligned_cols=33 Identities=15% Similarity=0.284 Sum_probs=25.6
Q ss_pred CcChHHHHHHHHHHHHHhhhhhhhhhhhhccCC
Q 032481 25 AVPFATMFALVFLWFGISIPLVFVGSYIGFKKP 57 (140)
Q Consensus 25 aipf~ti~~l~~lw~~vsiPL~~~G~~~g~k~~ 57 (140)
+.--...+..+..+-.+-+|++++.|++|-+-+
T Consensus 227 ~~~~n~~m~~LT~~t~iflPlt~i~g~fGMN~~ 259 (292)
T PF01544_consen 227 SNRQNRVMKVLTIVTAIFLPLTFITGIFGMNFK 259 (292)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHTTSTTS-SS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcc
Confidence 333566777888888899999999999997543
No 8
>PF06210 DUF1003: Protein of unknown function (DUF1003); InterPro: IPR010406 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=28.44 E-value=1.8e+02 Score=20.51 Aligned_cols=46 Identities=20% Similarity=0.314 Sum_probs=37.0
Q ss_pred hHHHHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHhhhhhhhh
Q 032481 4 GICFAIFFVLNALIWGEKSSGAVPFATMFALVFLWFGISIPLVFVG 49 (140)
Q Consensus 4 ~~~~~~~~ilN~i~w~~~Ss~aipf~ti~~l~~lw~~vsiPL~~~G 49 (140)
+.+++++..+|........=+-.||.-+-.++.+--....|+.+.+
T Consensus 11 ~~~~~~Wi~~N~~~~~~~~fDpyPFilLnl~lS~~Aa~~ap~Ilms 56 (108)
T PF06210_consen 11 TVFLAVWILLNILAPPRPAFDPYPFILLNLVLSLEAAYQAPLILMS 56 (108)
T ss_pred HHHHHHHHHHHhhccccCCCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888999998888766678899888888888888888887775
No 9
>PRK11085 magnesium/nickel/cobalt transporter CorA; Provisional
Probab=26.40 E-value=1.2e+02 Score=25.29 Aligned_cols=36 Identities=11% Similarity=0.065 Sum_probs=28.5
Q ss_pred cCCCCcChHHHHHHHHHHHHHhhhhhhhhhhhhccC
Q 032481 21 KSSGAVPFATMFALVFLWFGISIPLVFVGSYIGFKK 56 (140)
Q Consensus 21 ~Ss~aipf~ti~~l~~lw~~vsiPL~~~G~~~g~k~ 56 (140)
.|-.+.--..++..+..|-.+-.|++++.|++|-+-
T Consensus 245 ~~~i~~~~N~~mk~lTv~s~if~pptliagiyGMNf 280 (316)
T PRK11085 245 MGFINIEQNRIIKIFSVVSVVFLPPTLVASSYGMNF 280 (316)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 333344456788999999999999999999999754
No 10
>KOG1134 consensus Uncharacterized conserved protein [General function prediction only]
Probab=25.29 E-value=3.5e+02 Score=25.45 Aligned_cols=55 Identities=24% Similarity=0.218 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhccCCCCCCCcccCCCCCCCCCCCCc-cchhhhhhcccccchh
Q 032481 29 ATMFALVFLWFGISIPLVFVGSYIGFKKPAIEDPVKTNKIPRQILEQPWY-MNPIFSILIGGILPFG 94 (140)
Q Consensus 29 ~ti~~l~~lw~~vsiPL~~~G~~~g~k~~~~~~P~~~n~ipR~IP~~p~y-~~~~~~~~~~G~lPF~ 94 (140)
.+.+.++++-++-++|..++|++. ..+.+.|..|--++- ..+....++.|++|-.
T Consensus 362 ~~~~~~~~li~f~~iPva~V~~l~-----------nl~~l~~~~Pflk~i~~~~~i~~vI~gfLP~l 417 (728)
T KOG1134|consen 362 LVNVALFLLLFFWIIPVAFVQALT-----------NLEGLSKVFPFLKPILEMKFISSVITGFLPTL 417 (728)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----------hhhhhhhccchhhhhhhcchHHHHHHhhhHHH
Confidence 445677778888899999999988 334555666644332 2356778899999944
No 11
>COG4420 Predicted membrane protein [Function unknown]
Probab=24.87 E-value=2.4e+02 Score=22.16 Aligned_cols=46 Identities=20% Similarity=0.331 Sum_probs=39.8
Q ss_pred hHHHHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHhhhhhhhh
Q 032481 4 GICFAIFFVLNALIWGEKSSGAVPFATMFALVFLWFGISIPLVFVG 49 (140)
Q Consensus 4 ~~~~~~~~ilN~i~w~~~Ss~aipf~ti~~l~~lw~~vsiPL~~~G 49 (140)
..+++++..+|...+...+=.-+||--+-.++.+--.+..|+.++.
T Consensus 65 ~~~ll~Wi~lNl~~~~~~~wDpyPFi~LnLllS~~AaiqAp~IlmS 110 (191)
T COG4420 65 TLLLLLWIVLNLFLVPGLAWDPYPFILLNLLLSTLAAIQAPLILMS 110 (191)
T ss_pred HHHHHHHHHHHHhhhcCCcCCCccHHHHHHHHHHHHHHHHhHHHHH
Confidence 3567889999999999999999999888888888888888888764
No 12
>PF12962 DUF3851: Protein of unknown function (DUF3851); InterPro: IPR024216 This entry represents a family of uncharacterised proteins that were found by clustering human gut metagenomic sequences [].
Probab=23.63 E-value=69 Score=23.18 Aligned_cols=18 Identities=28% Similarity=0.567 Sum_probs=15.5
Q ss_pred hHHHHHHHHHHHhhhhhh
Q 032481 94 GAIFIELFFILTSIWLHQ 111 (140)
Q Consensus 94 ~~i~vEl~~i~~slW~~~ 111 (140)
.++|+||++.++|+-.++
T Consensus 104 lA~Y~EL~~Mm~slm~Ge 121 (124)
T PF12962_consen 104 LALYVELHHMMASLMLGE 121 (124)
T ss_pred HHHHHHHHHHHHHHHhhh
Confidence 389999999999987665
No 13
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=22.56 E-value=1.5e+02 Score=24.45 Aligned_cols=32 Identities=9% Similarity=0.205 Sum_probs=26.8
Q ss_pred cChHHHHHHHHHHHHHhhhhhhhhhhhhccCC
Q 032481 26 VPFATMFALVFLWFGISIPLVFVGSYIGFKKP 57 (140)
Q Consensus 26 ipf~ti~~l~~lw~~vsiPL~~~G~~~g~k~~ 57 (140)
.--..++..+.+|-.+-.|+|++.|++|-+-+
T Consensus 256 ~~~N~imk~LTi~s~iflPpTlIagiyGMNf~ 287 (322)
T COG0598 256 NNQNEIMKILTIVSTIFLPPTLITGFYGMNFK 287 (322)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHcccccCCC
Confidence 33456788999999999999999999997654
No 14
>PF09605 Trep_Strep: Hypothetical bacterial integral membrane protein (Trep_Strep); InterPro: IPR011733 This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae (strain ATCC BAA-255 / R6).
Probab=20.27 E-value=68 Score=24.53 Aligned_cols=27 Identities=22% Similarity=0.380 Sum_probs=18.5
Q ss_pred HHHHHHHHhhhhhhhhhhhhcc--CCCCC
Q 032481 34 LVFLWFGISIPLVFVGSYIGFK--KPAIE 60 (140)
Q Consensus 34 l~~lw~~vsiPL~~~G~~~g~k--~~~~~ 60 (140)
.+.......+-..++|+++|.| |+++|
T Consensus 157 ~~~~~~~~~~v~a~lG~~lG~kllkKHF~ 185 (186)
T PF09605_consen 157 MLIIIIIITFVGALLGALLGKKLLKKHFE 185 (186)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3444555667778899999987 55554
Done!