Query 032481
Match_columns 140
No_of_seqs 107 out of 499
Neff 6.4
Searched_HMMs 29240
Date Tue Mar 26 00:09:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032481.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032481hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ev6_A Magnesium transport pro 37.1 36 0.0012 26.8 4.2 29 28-56 275-303 (339)
2 2pv9_C Proteinase-activated re 27.6 23 0.0008 18.2 1.0 15 67-81 6-20 (26)
3 1j3e_A SEQA protein; protein-D 22.0 25 0.00087 24.4 0.6 13 66-78 68-80 (115)
4 3sk7_A Protein SEQA; sequestra 21.5 27 0.00094 24.3 0.7 13 66-78 69-81 (116)
5 3d85_C IL-23 subunit, interleu 20.0 21 0.00071 26.0 -0.1 19 61-79 121-139 (178)
6 2iub_A CORA, divalent cation t 19.4 43 0.0015 26.7 1.6 30 27-56 298-327 (363)
7 1lrr_A SEQA protein; protein-D 18.8 27 0.00094 24.8 0.3 13 66-78 84-96 (131)
8 2kog_A Vesicle-associated memb 13.3 2E+02 0.0068 19.5 3.6 25 107-131 92-117 (119)
9 3fmt_A Protein SEQA; protein-D 12.2 54 0.0018 24.1 0.4 13 66-78 115-127 (162)
10 3sd2_A Putative member of DUF3 9.4 1.1E+02 0.0039 20.5 1.2 15 64-78 12-26 (101)
No 1
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=37.08 E-value=36 Score=26.84 Aligned_cols=29 Identities=7% Similarity=0.146 Sum_probs=25.1
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhhhhhccC
Q 032481 28 FATMFALVFLWFGISIPLVFVGSYIGFKK 56 (140)
Q Consensus 28 f~ti~~l~~lw~~vsiPL~~~G~~~g~k~ 56 (140)
-..++..+..|-.+-+|++++.|++|-+-
T Consensus 275 ~N~~mk~LTiit~IflP~T~IaGiyGMNf 303 (339)
T 4ev6_A 275 MNQIMKILTMVTTIFAVPMWITGIYGMNF 303 (339)
T ss_dssp HHHHHHHHHHHHHHSSHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCcC
Confidence 34677889999999999999999999764
No 2
>2pv9_C Proteinase-activated receptor 4; serine protease, hydrolase; HET: NAG; 3.50A {Mus musculus}
Probab=27.61 E-value=23 Score=18.17 Aligned_cols=15 Identities=13% Similarity=-0.020 Sum_probs=11.8
Q ss_pred CCCCCCCCCCCccch
Q 032481 67 KIPRQILEQPWYMNP 81 (140)
Q Consensus 67 ~ipR~IP~~p~y~~~ 81 (140)
..||.+|-|+|-.++
T Consensus 6 ~~P~~~Pg~~~an~s 20 (26)
T 2pv9_C 6 PNPRGYPGKFCANDS 20 (26)
T ss_dssp CEECSCTTTTCSCCC
T ss_pred CCCccCCCCccCCCc
Confidence 468999999987664
No 3
>1j3e_A SEQA protein; protein-DNA complex, recognition of hemimethylated DNA, mismatched DNA, replication; HET: 6MA; 2.50A {Escherichia coli} SCOP: d.228.1.1 PDB: 1iu3_C
Probab=21.99 E-value=25 Score=24.40 Aligned_cols=13 Identities=15% Similarity=0.667 Sum_probs=10.9
Q ss_pred CCCCCCCCCCCCc
Q 032481 66 NKIPRQILEQPWY 78 (140)
Q Consensus 66 n~ipR~IP~~p~y 78 (140)
...||+||..|++
T Consensus 68 ~tkPK~Ip~TpfW 80 (115)
T 1j3e_A 68 QTKPKHVPGTPYW 80 (115)
T ss_dssp SCCCEECTTSSCE
T ss_pred CCCCCcCCCCCee
Confidence 4579999999965
No 4
>3sk7_A Protein SEQA; sequestration, negative regulator, DNA replication initiatio binding, replication inhibitor; HET: FME; 1.50A {Vibrio cholerae}
Probab=21.47 E-value=27 Score=24.27 Aligned_cols=13 Identities=23% Similarity=0.680 Sum_probs=10.7
Q ss_pred CCCCCCCCCCCCc
Q 032481 66 NKIPRQILEQPWY 78 (140)
Q Consensus 66 n~ipR~IP~~p~y 78 (140)
...|||||..|+.
T Consensus 69 ~tkPK~Ip~TpfW 81 (116)
T 3sk7_A 69 TTKPKAIPNTPFW 81 (116)
T ss_dssp TSCCEECTTSSCE
T ss_pred CCCCCcCCCCCee
Confidence 4579999999954
No 5
>3d85_C IL-23 subunit, interleukin-23 subunit P19; FAB, immune system/cytokine complex; 1.90A {Homo sapiens} PDB: 3d87_A* 3qwr_B* 3duh_C*
Probab=20.03 E-value=21 Score=25.97 Aligned_cols=19 Identities=32% Similarity=0.520 Sum_probs=8.0
Q ss_pred CCcccCCCCCCCCCCCCcc
Q 032481 61 DPVKTNKIPRQILEQPWYM 79 (140)
Q Consensus 61 ~P~~~n~ipR~IP~~p~y~ 79 (140)
..-.+.|.||..|.|||-.
T Consensus 121 hhwet~q~Ps~~psq~wqr 139 (178)
T 3d85_C 121 HHWETQQIPSLSPSQPWQR 139 (178)
T ss_dssp ----------CCCCCHHHH
T ss_pred CCcccccCCCCCCcchHHH
Confidence 3446789999999999964
No 6
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=19.44 E-value=43 Score=26.75 Aligned_cols=30 Identities=17% Similarity=0.326 Sum_probs=24.1
Q ss_pred ChHHHHHHHHHHHHHhhhhhhhhhhhhccC
Q 032481 27 PFATMFALVFLWFGISIPLVFVGSYIGFKK 56 (140)
Q Consensus 27 pf~ti~~l~~lw~~vsiPL~~~G~~~g~k~ 56 (140)
--..++..+..|-.+-+|++++.|++|-+-
T Consensus 298 ~~N~imk~LTiit~IflP~T~IaGiyGMNf 327 (363)
T 2iub_A 298 KTNEVMKVLTIIATIFMPLTFIAGIYGMNF 327 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSCC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcccC
Confidence 345678899999999999999999999654
No 7
>1lrr_A SEQA protein; protein-DNA complex, replication, methylated GATC, replication inhibitor/DNA complex; HET: 6MA; 2.65A {Escherichia coli} SCOP: d.228.1.1
Probab=18.78 E-value=27 Score=24.77 Aligned_cols=13 Identities=15% Similarity=0.667 Sum_probs=10.9
Q ss_pred CCCCCCCCCCCCc
Q 032481 66 NKIPRQILEQPWY 78 (140)
Q Consensus 66 n~ipR~IP~~p~y 78 (140)
...||+||..|++
T Consensus 84 ~tkPK~Ip~TpfW 96 (131)
T 1lrr_A 84 QTKPKHVPGTPYW 96 (131)
T ss_dssp CCCCEECTTSSCE
T ss_pred CCCCCcCCCCCeE
Confidence 4579999999965
No 8
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=13.29 E-value=2e+02 Score=19.55 Aligned_cols=25 Identities=20% Similarity=0.626 Sum_probs=11.1
Q ss_pred hhhh-hhHHHHHHHHHHHHHHHHHHh
Q 032481 107 IWLH-QFYYLFGFLLLVFLILIVTCV 131 (140)
Q Consensus 107 lW~~-~~yy~fgfL~~~~iil~i~~a 131 (140)
.|++ |++-..|...+.++..++..+
T Consensus 92 wwkn~K~~iii~~iv~iii~iIi~~~ 117 (119)
T 2kog_A 92 WWKNLKMMIILGVICAIILIIIIVYF 117 (119)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhe
Confidence 3444 355555555444443333333
No 9
>3fmt_A Protein SEQA; protein-DNA complex, hemimethylated GATC, DNA replication; HET: 6MA; 2.98A {Escherichia coli}
Probab=12.23 E-value=54 Score=24.06 Aligned_cols=13 Identities=15% Similarity=0.667 Sum_probs=10.7
Q ss_pred CCCCCCCCCCCCc
Q 032481 66 NKIPRQILEQPWY 78 (140)
Q Consensus 66 n~ipR~IP~~p~y 78 (140)
...|||||..|+.
T Consensus 115 ~tkPK~Ip~TpfW 127 (162)
T 3fmt_A 115 QTKPKHVPGTPYW 127 (162)
T ss_dssp SCCEEECTTSSCE
T ss_pred CCCCCcCCCCCee
Confidence 4579999999954
No 10
>3sd2_A Putative member of DUF3244 protein family; immunoglobulin-like beta-sandwich, structural genomics, JOIN for structural genomics; HET: MSE; 1.40A {Bacteroides thetaiotaomicron}
Probab=9.39 E-value=1.1e+02 Score=20.54 Aligned_cols=15 Identities=33% Similarity=0.403 Sum_probs=10.0
Q ss_pred ccCCCCCCCCCCCCc
Q 032481 64 KTNKIPRQILEQPWY 78 (140)
Q Consensus 64 ~~n~ipR~IP~~p~y 78 (140)
+...++|-||.||-+
T Consensus 12 ~~~~~~rsI~i~P~~ 26 (101)
T 3sd2_A 12 DSRSNPMGIPIQPTY 26 (101)
T ss_dssp ----CCCCCCCCCSS
T ss_pred CCccccceeeecccc
Confidence 355689999999976
Done!