Query 032481
Match_columns 140
No_of_seqs 107 out of 499
Neff 6.4
Searched_HMMs 13730
Date Tue Mar 26 00:09:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032481.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/032481hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2iuba2 f.17.3.1 (A:286-349) M 28.9 17 0.0012 20.5 2.3 26 31-56 5-30 (64)
2 d1j3ea_ d.228.1.1 (A:) Replica 19.5 14 0.0011 24.0 0.6 13 66-78 68-80 (115)
3 d2r6gf1 e.70.1.1 (F:13-260) Ma 7.1 3.7E+02 0.027 18.6 6.6 44 12-55 37-81 (248)
4 d2axte1 f.23.38.1 (E:3-84) Cyt 5.6 3E+02 0.022 16.1 3.4 31 21-51 1-33 (82)
5 d1v5ra1 d.82.4.1 (A:7-91) Grow 4.5 85 0.0062 19.0 0.1 16 61-76 69-84 (85)
6 d2d9ta1 b.34.9.1 (A:8-67) Tudo 4.4 97 0.0071 16.6 0.3 8 70-77 53-60 (60)
7 d1v54a_ f.24.1.1 (A:) Mitochon 4.0 1.9E+02 0.014 22.6 2.0 43 68-110 436-479 (514)
8 d1iwga8 f.35.1.1 (A:513-566,A: 3.8 3.4E+02 0.025 17.9 3.0 16 40-55 88-103 (222)
9 d1husa_ a.75.1.1 (A:) Ribosoma 3.5 2.2E+02 0.016 18.0 1.6 14 70-83 1-14 (139)
10 d2po6a2 d.19.1.1 (A:6-183) CD1 3.5 1.4E+02 0.0099 19.6 0.5 13 67-79 38-50 (178)
No 1
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=28.95 E-value=17 Score=20.52 Aligned_cols=26 Identities=19% Similarity=0.416 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhccC
Q 032481 31 MFALVFLWFGISIPLVFVGSYIGFKK 56 (140)
Q Consensus 31 i~~l~~lw~~vsiPL~~~G~~~g~k~ 56 (140)
.+..+..+-.+-+|++++.|++|-+-
T Consensus 5 ~mk~lT~it~iflP~t~i~gifGMN~ 30 (64)
T d2iuba2 5 VMKVLTIIATIFMPLTFIAGIYGMNF 30 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCC---
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccCC
Confidence 45677788889999999999999753
No 2
>d1j3ea_ d.228.1.1 (A:) Replication modulator SeqA, C-terminal DNA-binding domain {Escherichia coli [TaxId: 562]}
Probab=19.49 E-value=14 Score=23.98 Aligned_cols=13 Identities=15% Similarity=0.667 Sum_probs=10.9
Q ss_pred CCCCCCCCCCCCc
Q 032481 66 NKIPRQILEQPWY 78 (140)
Q Consensus 66 n~ipR~IP~~p~y 78 (140)
...||+||..|++
T Consensus 68 ~tkPk~Ip~TpfW 80 (115)
T d1j3ea_ 68 QTKPKHVPGTPYW 80 (115)
T ss_dssp SCCCEECTTSSCE
T ss_pred CCCCccCCCCCeE
Confidence 3579999999976
No 3
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=7.10 E-value=3.7e+02 Score=18.61 Aligned_cols=44 Identities=11% Similarity=0.034 Sum_probs=35.6
Q ss_pred HHHHHHHHhcCCCCcChHHHH-HHHHHHHHHhhhhhhhhhhhhcc
Q 032481 12 VLNALIWGEKSSGAVPFATMF-ALVFLWFGISIPLVFVGSYIGFK 55 (140)
Q Consensus 12 ilN~i~w~~~Ss~aipf~ti~-~l~~lw~~vsiPL~~~G~~~g~k 55 (140)
..=.+.|.+-|.+++|.+-+. .+++|-.++-.|+.+-+.+--.+
T Consensus 37 ~~~~~~~vy~s~r~~p~kyi~PG~~~l~~Fvi~Pi~yT~~iaFTN 81 (248)
T d2r6gf1 37 LSSAGLYIFANRKAYAWRYVYPGMAGMGLFVLFPLVCTIAIAFTN 81 (248)
T ss_dssp HHHHHHHHHSSSCCTTHHHHHHHHHHHHHHTHHHHHHHHHGGGBC
T ss_pred HHHheEEEEEccCccceehhhhHHHHHHHHHHHhheeEEEEEEEE
Confidence 334556788999999999887 78888899999999988876544
No 4
>d2axte1 f.23.38.1 (E:3-84) Cytochrome b559 subunit alpha, PsbE {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=5.61 E-value=3e+02 Score=16.08 Aligned_cols=31 Identities=29% Similarity=0.662 Sum_probs=21.4
Q ss_pred cCCCCcChHHHHHHHHHHHHHh--hhhhhhhhh
Q 032481 21 KSSGAVPFATMFALVFLWFGIS--IPLVFVGSY 51 (140)
Q Consensus 21 ~Ss~aipf~ti~~l~~lw~~vs--iPL~~~G~~ 51 (140)
||++.=||..++.=+=-|.+-+ +|-.++.|.
T Consensus 1 GstgERpF~dIitsiRYWvIHsiTIPslFiaGw 33 (82)
T d2axte1 1 GTTGERPFSDIITSVRYWVIHSITIPALFIAGW 33 (82)
T ss_dssp CCCCSSCHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcccHHhhhheeeEEEEEeecccHHHHhhh
Confidence 5788888888887777777644 455555444
No 5
>d1v5ra1 d.82.4.1 (A:7-91) Growth-arrest-specific protein 2, GAS2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=4.48 E-value=85 Score=18.97 Aligned_cols=16 Identities=25% Similarity=0.291 Sum_probs=13.1
Q ss_pred CCcccCCCCCCCCCCC
Q 032481 61 DPVKTNKIPRQILEQP 76 (140)
Q Consensus 61 ~P~~~n~ipR~IP~~p 76 (140)
.|||..++.|.-|++|
T Consensus 69 dPcr~~~~~~~~~~~~ 84 (85)
T d1v5ra1 69 DPCRMLQISRVDGKTS 84 (85)
T ss_dssp CHHHHTSSCCCCCCCC
T ss_pred ChhhhhhcccCCCCCC
Confidence 4999999999887754
No 6
>d2d9ta1 b.34.9.1 (A:8-67) Tudor domain-containing protein 3, TDRD3 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=4.38 E-value=97 Score=16.62 Aligned_cols=8 Identities=13% Similarity=0.837 Sum_probs=5.6
Q ss_pred CCCCCCCC
Q 032481 70 RQILEQPW 77 (140)
Q Consensus 70 R~IP~~p~ 77 (140)
|++|++.|
T Consensus 53 r~l~~e~~ 60 (60)
T d2d9ta1 53 KPVQTEAW 60 (60)
T ss_dssp EECCCCCC
T ss_pred CcCCCCCC
Confidence 67777766
No 7
>d1v54a_ f.24.1.1 (A:) Mitochondrial cytochrome c oxidase, subunit I {Cow (Bos taurus) [TaxId: 9913]}
Probab=4.03 E-value=1.9e+02 Score=22.64 Aligned_cols=43 Identities=19% Similarity=0.314 Sum_probs=22.9
Q ss_pred CCCCCCCCC-CccchhhhhhcccccchhHHHHHHHHHHHhhhhh
Q 032481 68 IPRQILEQP-WYMNPIFSILIGGILPFGAIFIELFFILTSIWLH 110 (140)
Q Consensus 68 ipR~IP~~p-~y~~~~~~~~~~G~lPF~~i~vEl~~i~~slW~~ 110 (140)
.||++++.| -+.......-+++.+-..++..-+.-+.+|+.++
T Consensus 436 mpRR~~~Y~~~~~~~n~~~siG~~i~~~~~~~f~~~~~~s~~~~ 479 (514)
T d1v54a_ 436 MPRRYSDYPDAYTMWNTISSMGSFISLTAVMLMVFIIWEAFASK 479 (514)
T ss_dssp CBTTCSSCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 456665532 1222223445666666666666666666666654
No 8
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=3.76 E-value=3.4e+02 Score=17.94 Aligned_cols=16 Identities=19% Similarity=0.453 Sum_probs=12.4
Q ss_pred HHhhhhhhhhhhhhcc
Q 032481 40 GISIPLVFVGSYIGFK 55 (140)
Q Consensus 40 ~vsiPL~~~G~~~g~k 55 (140)
..++|++++|+..+..
T Consensus 88 ~~~ipl~~~~~~~~l~ 103 (222)
T d1iwga8 88 MLVVPLGVIGALLAAT 103 (222)
T ss_dssp GGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4678999998888743
No 9
>d1husa_ a.75.1.1 (A:) Ribosomal protein S7 {Bacillus stearothermophilus [TaxId: 1422]}
Probab=3.54 E-value=2.2e+02 Score=17.97 Aligned_cols=14 Identities=29% Similarity=0.660 Sum_probs=10.9
Q ss_pred CCCCCCCCccchhh
Q 032481 70 RQILEQPWYMNPIF 83 (140)
Q Consensus 70 R~IP~~p~y~~~~~ 83 (140)
|+|.+.|-|.++.+
T Consensus 1 r~i~pd~~y~~~lv 14 (139)
T d1husa_ 1 RDVLPDPIYNSKLV 14 (139)
T ss_dssp CCCCCCTTTCCHHH
T ss_pred CCCCCCCccCCHHH
Confidence 78888888887644
No 10
>d2po6a2 d.19.1.1 (A:6-183) CD1, alpha-1 and alpha-2 domains {Human (Homo sapiens), CD1d [TaxId: 9606]}
Probab=3.46 E-value=1.4e+02 Score=19.58 Aligned_cols=13 Identities=15% Similarity=0.243 Sum_probs=10.2
Q ss_pred CCCCCCCCCCCcc
Q 032481 67 KIPRQILEQPWYM 79 (140)
Q Consensus 67 ~ipR~IP~~p~y~ 79 (140)
...|.+|.+||-.
T Consensus 38 ~~~~~~~~~pW~~ 50 (178)
T d2po6a2 38 DSDTVRSLKPWSQ 50 (178)
T ss_dssp TCSSCEECSTTCS
T ss_pred CCCeEEECCchhh
Confidence 3568899999965
Done!