Your job contains 1 sequence.
>032483
MPKDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHG
GYGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRR
YFSRFGRILDVYVPKVRQH
The BLAST search returned 14 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 032483
(139 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2115169 - symbol:AT4G36960 species:3702 "Arabi... 372 2.4e-37 2
UNIPROTKB|F8VYN5 - symbol:HNRNPA1 "Heterogeneous nuclear ... 91 1.0e-10 2
TAIR|locus:2173967 - symbol:AT5G55550 species:3702 "Arabi... 106 8.3e-09 2
GENEDB_PFALCIPARUM|PF11_0083 - symbol:PF11_0083 "nucleic ... 104 1.0e-08 2
UNIPROTKB|Q8IIT2 - symbol:PF11_0083 "Nucleic acid binding... 104 1.0e-08 2
TAIR|locus:504955752 - symbol:AT3G13224 species:3702 "Ara... 92 4.4e-08 2
RGD|1310906 - symbol:Tardbp "TAR DNA binding protein" spe... 104 4.8e-08 2
TAIR|locus:2133862 - symbol:AT4G26650 species:3702 "Arabi... 108 4.9e-08 2
UNIPROTKB|D4A9S4 - symbol:Tardbp "Protein Tardbp" species... 104 5.0e-08 2
UNIPROTKB|Q2KJ45 - symbol:TARDBP "Uncharacterized protein... 105 5.6e-08 2
UNIPROTKB|B1AKP7 - symbol:TARDBP "TAR DNA-binding protein... 103 7.1e-08 2
UNIPROTKB|B4DJ45 - symbol:TARDBP "cDNA FLJ58188, highly s... 103 7.3e-08 2
UNIPROTKB|G3V162 - symbol:TARDBP "TAR DNA-binding protein... 103 7.3e-08 2
ZFIN|ZDB-GENE-031030-1 - symbol:tardbpl "TAR DNA binding ... 103 7.8e-08 2
ZFIN|ZDB-GENE-030131-3777 - symbol:tardbp "TAR DNA bindin... 105 1.3e-07 2
UNIPROTKB|G3MX91 - symbol:TARDBP "Uncharacterized protein... 105 1.6e-07 2
UNIPROTKB|E2QS43 - symbol:TARDBP "Uncharacterized protein... 105 1.6e-07 2
MGI|MGI:2387629 - symbol:Tardbp "TAR DNA binding protein"... 104 1.7e-07 2
UNIPROTKB|Q13148 - symbol:TARDBP "TAR DNA-binding protein... 103 2.1e-07 2
FB|FBgn0036496 - symbol:CG7804 species:7227 "Drosophila m... 124 2.4e-07 1
WB|WBGene00019249 - symbol:H28G03.1 species:6239 "Caenorh... 108 2.7e-07 2
UNIPROTKB|F1NBY1 - symbol:TARDBP "TAR DNA-binding protein... 103 2.7e-07 2
UNIPROTKB|Q5ZLN5 - symbol:TARDBP "TAR DNA-binding protein... 103 2.7e-07 2
ASPGD|ASPL0000063757 - symbol:AN10941 species:162425 "Eme... 89 3.1e-07 2
UNIPROTKB|I3L7S7 - symbol:LOC100621383 "Uncharacterized p... 101 4.4e-07 2
TAIR|locus:2129590 - symbol:AT4G14300 species:3702 "Arabi... 121 8.2e-07 1
UNIPROTKB|F1M6U1 - symbol:F1M6U1 "Uncharacterized protein... 86 1.0e-06 2
POMBASE|SPBC660.15 - symbol:SPBC660.15 "mRNA cleavage fac... 85 1.1e-06 2
UNIPROTKB|D4A491 - symbol:D4A491 "Uncharacterized protein... 92 1.2e-06 2
UNIPROTKB|I3LNA4 - symbol:LOC100621383 "Uncharacterized p... 101 1.7e-06 2
DICTYBASE|DDB_G0292422 - symbol:DDB_G0292422 "RNA-binding... 87 2.8e-06 2
UNIPROTKB|F1P5I0 - symbol:LOC100859627 "Uncharacterized p... 83 2.9e-06 2
UNIPROTKB|F1NBB6 - symbol:LOC100859627 "Uncharacterized p... 83 3.6e-06 2
FB|FBgn0260943 - symbol:Rbp6 "RNA-binding protein 6" spec... 83 4.8e-06 2
UNIPROTKB|F1M5N1 - symbol:F1M5N1 "Uncharacterized protein... 86 4.8e-06 2
UNIPROTKB|F1PA19 - symbol:HNRNPAB "Uncharacterized protei... 86 4.8e-06 2
UNIPROTKB|Q3ZC44 - symbol:HNRNPAB "Uncharacterized protei... 86 5.0e-06 2
UNIPROTKB|F1NIB4 - symbol:HNRNPAB "Uncharacterized protei... 86 5.4e-06 2
MGI|MGI:1330294 - symbol:Hnrnpab "heterogeneous nuclear r... 87 5.7e-06 2
UNIPROTKB|Q9QX80 - symbol:Hnrnpab "Hnrpab protein" specie... 87 5.7e-06 2
UNIPROTKB|D6R9P3 - symbol:HNRNPAB "Heterogeneous nuclear ... 86 5.9e-06 2
ZFIN|ZDB-GENE-070212-1 - symbol:dazap1 "DAZ associated pr... 113 5.9e-06 1
UNIPROTKB|D6RD18 - symbol:HNRNPAB "Heterogeneous nuclear ... 86 6.1e-06 2
RGD|2321074 - symbol:LOC100360986 "mCG1035404-like" speci... 83 6.4e-06 2
TAIR|locus:2077392 - symbol:AT3G07810 species:3702 "Arabi... 105 6.4e-06 2
UNIPROTKB|E7EWI9 - symbol:HNRNPA3 "Heterogeneous nuclear ... 83 6.5e-06 2
UNIPROTKB|E1BZE6 - symbol:LOC100859627 "Uncharacterized p... 83 6.5e-06 2
RGD|69255 - symbol:Hnrnpab "heterogeneous nuclear ribonuc... 87 6.6e-06 2
ZFIN|ZDB-GENE-030826-25 - symbol:msi2a "musashi homolog 2... 81 6.9e-06 2
UNIPROTKB|E2R5N6 - symbol:E2R5N6 "Uncharacterized protein... 87 8.3e-06 2
UNIPROTKB|F1LNG4 - symbol:Hnrnpa3 "Heterogeneous nuclear ... 83 8.8e-06 2
UNIPROTKB|E9PTS0 - symbol:Hnrnpab "Protein Hnrnpab" speci... 87 9.1e-06 2
UNIPROTKB|Q9QX81 - symbol:Hnrnpab "RCG34663, isoform CRA_... 87 9.2e-06 2
UNIPROTKB|D6RBZ0 - symbol:HNRNPAB "Heterogeneous nuclear ... 86 9.7e-06 2
UNIPROTKB|E2RFV7 - symbol:HNRNPA3 "Uncharacterized protei... 83 1.0e-05 2
UNIPROTKB|P51991 - symbol:HNRNPA3 "Heterogeneous nuclear ... 83 1.0e-05 2
UNIPROTKB|F2Z5B4 - symbol:HNRNPA3 "Uncharacterized protei... 83 1.0e-05 2
RGD|727807 - symbol:Hnrnpa3 "heterogeneous nuclear ribonu... 83 1.0e-05 2
UNIPROTKB|E1BEG2 - symbol:HNRNPA3 "Uncharacterized protei... 83 1.0e-05 2
TAIR|locus:2037633 - symbol:RBP1 "RNA-binding protein 1" ... 89 1.1e-05 2
FB|FBgn0025790 - symbol:TBPH "TAR DNA-binding protein-43 ... 112 1.1e-05 1
UNIPROTKB|F1NIB2 - symbol:HNRNPAB "Uncharacterized protei... 86 1.2e-05 2
UNIPROTKB|F1Q2T4 - symbol:F1Q2T4 "Uncharacterized protein... 84 1.4e-05 2
UNIPROTKB|D4A6A2 - symbol:D4A6A2 "Uncharacterized protein... 78 1.6e-05 2
FB|FBgn0004237 - symbol:Hrb87F "Heterogeneous nuclear rib... 84 1.6e-05 2
UNIPROTKB|F1PGQ0 - symbol:F1PGQ0 "Uncharacterized protein... 82 1.7e-05 2
TAIR|locus:2007903 - symbol:AT1G17640 species:3702 "Arabi... 108 1.8e-05 1
UNIPROTKB|Q9XSY6 - symbol:Q9XSY6 "HnRNP A/B related prote... 86 1.9e-05 2
ZFIN|ZDB-GENE-050320-86 - symbol:msi1 "musashi homolog 1 ... 81 2.1e-05 2
FB|FBgn0004838 - symbol:Hrb27C "Heterogeneous nuclear rib... 87 2.3e-05 2
UNIPROTKB|F1LUM4 - symbol:F1LUM4 "Uncharacterized protein... 75 2.3e-05 2
UNIPROTKB|F1SCL3 - symbol:LOC100522980 "Uncharacterized p... 82 2.4e-05 2
UNIPROTKB|F1SCM6 - symbol:LOC100522063 "Uncharacterized p... 82 2.4e-05 2
TAIR|locus:2050992 - symbol:AT2G33410 species:3702 "Arabi... 107 2.6e-05 2
FB|FBgn0001215 - symbol:Hrb98DE "Heterogeneous nuclear ri... 79 2.8e-05 2
UNIPROTKB|F1M460 - symbol:F1M460 "Uncharacterized protein... 79 3.1e-05 2
FB|FBgn0011666 - symbol:msi "musashi" species:7227 "Droso... 80 3.2e-05 2
UNIPROTKB|F1LXW0 - symbol:F1LXW0 "Uncharacterized protein... 93 3.2e-05 2
ZFIN|ZDB-GENE-040426-2516 - symbol:zgc:77052 "zgc:77052" ... 82 3.2e-05 2
CGD|CAL0003460 - symbol:orf19.5989 species:5476 "Candida ... 107 3.3e-05 1
UNIPROTKB|D4A1X0 - symbol:D4A1X0 "Uncharacterized protein... 84 3.6e-05 2
UNIPROTKB|I3LPG0 - symbol:MSI1 "Uncharacterized protein" ... 82 4.0e-05 2
UNIPROTKB|F1MS42 - symbol:MSI1 "Uncharacterized protein" ... 82 4.4e-05 2
MGI|MGI:1924384 - symbol:Hnrnpa0 "heterogeneous nuclear r... 88 4.7e-05 2
UNIPROTKB|O43347 - symbol:MSI1 "RNA-binding protein Musas... 82 5.1e-05 2
RGD|1563684 - symbol:Hnrnpa0 "heterogeneous nuclear ribon... 88 5.2e-05 2
UNIPROTKB|F1LRH1 - symbol:Msi1 "RNA-binding protein Musas... 81 5.8e-05 2
UNIPROTKB|E9PSU5 - symbol:E9PSU5 "Uncharacterized protein... 78 6.3e-05 2
UNIPROTKB|E2RF37 - symbol:E2RF37 "Uncharacterized protein... 79 6.7e-05 2
GENEDB_PFALCIPARUM|PFD0700c - symbol:PFD0700c "RNA bindin... 84 6.8e-05 2
UNIPROTKB|Q8I1U3 - symbol:PFD0700c "RNA binding protein, ... 84 6.8e-05 2
MGI|MGI:107376 - symbol:Msi1 "musashi RNA-binding protein... 81 7.6e-05 2
RGD|628778 - symbol:Msi1 "musashi RNA-binding protein 1" ... 81 7.6e-05 2
UNIPROTKB|Q8K3P4 - symbol:Msi1 "RNA-binding protein Musas... 81 7.6e-05 2
UNIPROTKB|Q99729 - symbol:HNRNPAB "Heterogeneous nuclear ... 79 0.00011 2
UNIPROTKB|F1M3H8 - symbol:F1M3H8 "Uncharacterized protein... 79 0.00011 2
UNIPROTKB|L7N074 - symbol:L7N074 "Uncharacterized protein... 100 0.00011 1
UNIPROTKB|F1M6M1 - symbol:F1M6M1 "Uncharacterized protein... 77 0.00012 2
DICTYBASE|DDB_G0287335 - symbol:DDB_G0287335 "RNA-binding... 92 0.00013 1
UNIPROTKB|E2RJI3 - symbol:LOC608729 "Uncharacterized prot... 88 0.00018 2
WARNING: Descriptions of 42 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2115169 [details] [associations]
symbol:AT4G36960 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 KO:K14411
HSSP:Q14103 UniGene:At.4642 UniGene:At.4643 EMBL:AY048286
EMBL:BT000573 IPI:IPI00527793 RefSeq:NP_001154290.1
RefSeq:NP_568011.1 ProteinModelPortal:Q94AC3 SMR:Q94AC3
IntAct:Q94AC3 PaxDb:Q94AC3 PRIDE:Q94AC3 EnsemblPlants:AT4G36960.1
EnsemblPlants:AT4G36960.2 GeneID:829850 KEGG:ath:AT4G36960
TAIR:At4g36960 HOGENOM:HOG000070627 InParanoid:Q94AC3 OMA:EITDLYM
PhylomeDB:Q94AC3 ProtClustDB:CLSN2689792 Genevestigator:Q94AC3
Uniprot:Q94AC3
Length = 379
Score = 372 (136.0 bits), Expect = 2.8e-34, P = 2.8e-34
Identities = 79/115 (68%), Positives = 87/115 (75%)
Query: 1 MPKDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRP----VGR 56
MPKD SK HRGIGFITF+SADSVE+LM DTH+LGG+TV VDRATPKEDD P V R
Sbjct: 122 MPKDYNSKQHRGIGFITFSSADSVEDLMEDTHDLGGTTVAVDRATPKEDDHPPRPPPVAR 181
Query: 57 MSH------------GGYGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQR 99
MS GGYGAY+AYISAATRYAALGAPTLYD+P +FYGRGE + R
Sbjct: 182 MSRPPVAIAGGFGAPGGYGAYDAYISAATRYAALGAPTLYDNPATFYGRGEPTTR 236
Score = 312 (114.9 bits), Expect = 2.4e-37, Sum P(2) = 2.4e-37
Identities = 59/77 (76%), Positives = 66/77 (85%)
Query: 60 GGYGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQR-IGKKIFVGRLPQEATAEDL 118
GGYGAY+AYISAATRYAALGAPTLYD+P +FYGRGE + R IG KIFVGRLPQEA+ +DL
Sbjct: 197 GGYGAYDAYISAATRYAALGAPTLYDNPATFYGRGEPTTRGIGNKIFVGRLPQEASVDDL 256
Query: 119 RRYFSRFGRILDVYVPK 135
R YF RFG I D Y+PK
Sbjct: 257 RDYFGRFGHIQDAYIPK 273
Score = 105 (42.0 bits), Expect = 2.4e-37, Sum P(2) = 2.4e-37
Identities = 21/56 (37%), Positives = 34/56 (60%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMS 58
KD+ + RG G++TFASA+ +N + H LG + V ATPKE+ +P +++
Sbjct: 36 KDRSTGRSRGFGYVTFASAEDAKNALKGEHFLGNRILEVKVATPKEEMRQPAKKVT 91
Score = 104 (41.7 bits), Expect = 5.0e-05, P = 5.0e-05
Identities = 19/49 (38%), Positives = 28/49 (57%)
Query: 1 MPKDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKED 49
+PKD HRG GF+TFA + + +HE+ G V +D ATP ++
Sbjct: 271 IPKDPKRSGHRGFGFVTFAENGVADRVARRSHEICGQEVAIDSATPLDE 319
Score = 92 (37.4 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK 135
+IFV R+P + D R +F R+G I D+Y+PK
Sbjct: 92 RIFVARIPSSVSESDFRSHFERYGEITDLYMPK 124
>UNIPROTKB|F8VYN5 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0000380 EMBL:AC078778 HGNC:HGNC:5031
ChiTaRS:HNRNPA1 IPI:IPI00644968 ProteinModelPortal:F8VYN5
SMR:F8VYN5 PRIDE:F8VYN5 Ensembl:ENST00000550994 ArrayExpress:F8VYN5
Bgee:F8VYN5 Uniprot:F8VYN5
Length = 113
Score = 91 (37.1 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
Identities = 19/52 (36%), Positives = 29/52 (55%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRP 53
+D +K RG GF+T+A+ + V+ M H++ G V RA +ED RP
Sbjct: 2 RDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRP 53
Score = 71 (30.1 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
Identities = 17/39 (43%), Positives = 23/39 (58%)
Query: 95 ESSQRIG-----KKIFVGRLPQEATAEDLRRYFSRFGRI 128
E SQR G KKIFVG + ++ LR YF ++G+I
Sbjct: 48 EDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKI 86
>TAIR|locus:2173967 [details] [associations]
symbol:AT5G55550 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002688 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K14411 HSSP:Q61474 ProtClustDB:CLSN2689626 EMBL:AY050796
EMBL:AY096460 IPI:IPI00543007 RefSeq:NP_568826.1 RefSeq:NP_974937.1
UniGene:At.6910 ProteinModelPortal:Q949Z3 SMR:Q949Z3 PRIDE:Q949Z3
EnsemblPlants:AT5G55550.2 EnsemblPlants:AT5G55550.3 GeneID:835649
KEGG:ath:AT5G55550 TAIR:At5g55550 InParanoid:Q949Z3 OMA:VSERVIM
PhylomeDB:Q949Z3 Genevestigator:Q949Z3 Uniprot:Q949Z3
Length = 460
Score = 106 (42.4 bits), Expect = 4.1e-05, P = 4.1e-05
Identities = 36/107 (33%), Positives = 47/107 (43%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
D ++ RG GFITF S D+V+ ++ T HEL G V V RA PKE PV +
Sbjct: 144 DHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLVEVKRAVPKE--ISPVSNIRSPLA 201
Query: 63 GAYNAYISAATRYAALGAPTLY-DHPGSFYGRGESSQRIGKKIFVGR 108
N Y + R A + PG + G +R I GR
Sbjct: 202 SGVN-YGGGSNRMPANSYFNNFAPGPGFYNSLGPVGRRFSPVIGSGR 247
Score = 92 (37.4 bits), Expect = 8.3e-09, Sum P(2) = 8.3e-09
Identities = 18/32 (56%), Positives = 21/32 (65%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYV 133
KKIFVG LP T E+ + YF +FG I DV V
Sbjct: 110 KKIFVGGLPSSITEEEFKNYFDQFGTIADVVV 141
Score = 92 (37.4 bits), Expect = 8.3e-09, Sum P(2) = 8.3e-09
Identities = 24/69 (34%), Positives = 35/69 (50%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDD------FRPVGR 56
+D+ + RG GFI FA E +++D H + G TV +A P++D P+
Sbjct: 39 RDRATGRARGFGFIVFADPCVSERVIMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPIHL 98
Query: 57 MS--HGGYG 63
MS HGG G
Sbjct: 99 MSPVHGGGG 107
>GENEDB_PFALCIPARUM|PF11_0083 [details] [associations]
symbol:PF11_0083 "nucleic acid binding factor,
putative" species:5833 "Plasmodium falciparum" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 GO:GO:0006139 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AE014186 RefSeq:XP_001347758.2 ProteinModelPortal:Q8IIT2
EnsemblProtists:PF11_0083:mRNA GeneID:810634 KEGG:pfa:PF11_0083
EuPathDB:PlasmoDB:PF3D7_1107100 HOGENOM:HOG000282219
ProtClustDB:CLSZ2433037 Uniprot:Q8IIT2
Length = 588
Score = 104 (41.7 bits), Expect = 9.4e-05, P = 9.4e-05
Identities = 18/33 (54%), Positives = 27/33 (81%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK 135
+IF RLP EA+ +DL +YFS+FG+I+D+YV +
Sbjct: 227 RIFATRLPFEASKKDLEKYFSKFGKIVDIYVSR 259
Score = 100 (40.3 bits), Expect = 1.0e-08, Sum P(2) = 1.0e-08
Identities = 18/41 (43%), Positives = 26/41 (63%)
Query: 94 GESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP 134
G+ + G K+FV +L T E LR YF +FG I+D+Y+P
Sbjct: 494 GDEWNKRGYKLFVTKLNSATTIEKLRNYFEKFGEIIDIYMP 534
Score = 73 (30.8 bits), Expect = 1.0e-08, Sum P(2) = 1.0e-08
Identities = 14/54 (25%), Positives = 31/54 (57%)
Query: 10 HRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
++G GF++F +S+ ++ + H + G +VVD A+ ++D ++ + M Y
Sbjct: 266 NKGFGFVSFEKQESMNKVLKEKLHIICGKEIVVDVASMRDDKYKHLFHMPSENY 319
>UNIPROTKB|Q8IIT2 [details] [associations]
symbol:PF11_0083 "Nucleic acid binding protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0005575
"cellular_component" evidence=ND] [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 GO:GO:0006139 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AE014186 RefSeq:XP_001347758.2
ProteinModelPortal:Q8IIT2 EnsemblProtists:PF11_0083:mRNA
GeneID:810634 KEGG:pfa:PF11_0083 EuPathDB:PlasmoDB:PF3D7_1107100
HOGENOM:HOG000282219 ProtClustDB:CLSZ2433037 Uniprot:Q8IIT2
Length = 588
Score = 104 (41.7 bits), Expect = 9.4e-05, P = 9.4e-05
Identities = 18/33 (54%), Positives = 27/33 (81%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK 135
+IF RLP EA+ +DL +YFS+FG+I+D+YV +
Sbjct: 227 RIFATRLPFEASKKDLEKYFSKFGKIVDIYVSR 259
Score = 100 (40.3 bits), Expect = 1.0e-08, Sum P(2) = 1.0e-08
Identities = 18/41 (43%), Positives = 26/41 (63%)
Query: 94 GESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP 134
G+ + G K+FV +L T E LR YF +FG I+D+Y+P
Sbjct: 494 GDEWNKRGYKLFVTKLNSATTIEKLRNYFEKFGEIIDIYMP 534
Score = 73 (30.8 bits), Expect = 1.0e-08, Sum P(2) = 1.0e-08
Identities = 14/54 (25%), Positives = 31/54 (57%)
Query: 10 HRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
++G GF++F +S+ ++ + H + G +VVD A+ ++D ++ + M Y
Sbjct: 266 NKGFGFVSFEKQESMNKVLKEKLHIICGKEIVVDVASMRDDKYKHLFHMPSENY 319
>TAIR|locus:504955752 [details] [associations]
symbol:AT3G13224 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441 HSSP:Q14103
KO:K12741 OMA:HAINGHH EMBL:AP002042 EMBL:AY080630 EMBL:AY123003
EMBL:AK221448 IPI:IPI00534312 RefSeq:NP_683559.2 UniGene:At.27259
ProteinModelPortal:Q9LHL2 SMR:Q9LHL2 IntAct:Q9LHL2 PRIDE:Q9LHL2
EnsemblPlants:AT3G13224.2 GeneID:820515 KEGG:ath:AT3G13224
TAIR:At3g13224 InParanoid:Q9LHL2 PhylomeDB:Q9LHL2
ProtClustDB:CLSN2918087 Genevestigator:Q9LHL2 Uniprot:Q9LHL2
Length = 358
Score = 92 (37.4 bits), Expect = 4.4e-08, Sum P(2) = 4.4e-08
Identities = 18/45 (40%), Positives = 26/45 (57%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPK 47
+D+ + RG GFITFA V+ ++ DTH + G V + R PK
Sbjct: 52 RDRHTGQPRGFGFITFADPSVVDKVIEDTHVINGKQVEIKRTIPK 96
Score = 82 (33.9 bits), Expect = 4.4e-08, Sum P(2) = 4.4e-08
Identities = 17/47 (36%), Positives = 30/47 (63%)
Query: 94 GESSQRIG-KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKVRQH 139
G S+ I KKIFVG +P T ++L+ +F+++G +++ V +R H
Sbjct: 100 GNQSKDIKTKKIFVGGIPSTVTEDELKDFFAKYGNVVEHQV--IRDH 144
Score = 52 (23.4 bits), Expect = 5.2e-05, Sum P(2) = 5.2e-05
Identities = 17/43 (39%), Positives = 20/43 (46%)
Query: 55 GRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESS 97
G +GGYG Y A Y + G Y+ G YGRG SS
Sbjct: 311 GGEGYGGYGG-PGYGGA---YESGGPGGSYEGAGGPYGRGYSS 349
>RGD|1310906 [details] [associations]
symbol:Tardbp "TAR DNA binding protein" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003690 "double-stranded DNA binding" evidence=IEA;ISO]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IEA;ISO] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005726 "perichromatin fibrils" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0008380 "RNA splicing"
evidence=IEA;ISO] [GO:0016607 "nuclear speck" evidence=IDA]
[GO:0034976 "response to endoplasmic reticulum stress"
evidence=IEP] [GO:0035061 "interchromatin granule" evidence=IDA]
[GO:0043922 "negative regulation by host of viral transcription"
evidence=IEA;ISO] [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=IEA;ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1310906 GO:GO:0005737 GO:GO:0000166 GO:GO:0016607
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0034976 EMBL:CH473968
GO:GO:0005726 GO:GO:0035061 CTD:23435 GeneTree:ENSGT00570000079202
EMBL:BC083752 RefSeq:NP_001011979.1 UniGene:Rn.2633
Ensembl:ENSRNOT00000049822 GeneID:298648 KEGG:rno:298648
Uniprot:I6L9G6
Length = 285
Score = 104 (41.7 bits), Expect = 4.8e-08, Sum P(2) = 4.8e-08
Identities = 15/34 (44%), Positives = 29/34 (85%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK 135
+K+FVGR ++ TAE+L+++F ++G ++DV++PK
Sbjct: 191 RKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPK 224
Score = 44 (20.5 bits), Expect = 4.8e-08, Sum P(2) = 4.8e-08
Identities = 9/34 (26%), Positives = 16/34 (47%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGG 36
KD + +G GF+ F ++ +M H + G
Sbjct: 137 KDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDG 170
>TAIR|locus:2133862 [details] [associations]
symbol:AT4G26650 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0042732 "D-xylose
metabolic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002687 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K14411 HSSP:Q61474 EMBL:AF419605 EMBL:AY097345 IPI:IPI00533249
RefSeq:NP_567753.1 UniGene:At.20416 UniGene:At.67937
ProteinModelPortal:Q8W569 SMR:Q8W569 STRING:Q8W569 PRIDE:Q8W569
EnsemblPlants:AT4G26650.1 GeneID:828772 KEGG:ath:AT4G26650
TAIR:At4g26650 InParanoid:Q8W569 OMA:LVEAVIM PhylomeDB:Q8W569
ProtClustDB:CLSN2689626 Genevestigator:Q8W569 Uniprot:Q8W569
Length = 455
Score = 108 (43.1 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 31/75 (41%), Positives = 38/75 (50%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
D ++ RG GFITF S +SV+ ++ T HEL G V V RA PKE R GY
Sbjct: 156 DHNTQRPRGFGFITFDSEESVDMVLHKTFHELNGKMVEVKRAVPKELSSTTPNRSPLIGY 215
Query: 63 GAYNAYISAATRYAA 77
G N Y R +A
Sbjct: 216 G--NNYGVVPNRSSA 228
Score = 91 (37.1 bits), Expect = 4.9e-08, Sum P(2) = 4.9e-08
Identities = 24/69 (34%), Positives = 34/69 (49%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDF---RPVGRM-- 57
+D+ + RG GFI FA E +++D H + G TV +A P++D R M
Sbjct: 48 RDRTTGRARGFGFIVFADPSVAERVIMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPMHL 107
Query: 58 ---SHGGYG 63
SHGG G
Sbjct: 108 ISPSHGGNG 116
Score = 86 (35.3 bits), Expect = 4.9e-08, Sum P(2) = 4.9e-08
Identities = 17/32 (53%), Positives = 20/32 (62%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYV 133
KKIFVG LP T + + YF +FG I DV V
Sbjct: 122 KKIFVGGLPSSITEAEFKNYFDQFGTIADVVV 153
>UNIPROTKB|D4A9S4 [details] [associations]
symbol:Tardbp "Protein Tardbp" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1310906 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00197538 ProteinModelPortal:D4A9S4
Ensembl:ENSRNOT00000017922 ArrayExpress:D4A9S4 Uniprot:D4A9S4
Length = 288
Score = 104 (41.7 bits), Expect = 5.0e-08, Sum P(2) = 5.0e-08
Identities = 15/34 (44%), Positives = 29/34 (85%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK 135
+K+FVGR ++ TAE+L+++F ++G ++DV++PK
Sbjct: 191 RKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPK 224
Score = 44 (20.5 bits), Expect = 5.0e-08, Sum P(2) = 5.0e-08
Identities = 9/34 (26%), Positives = 16/34 (47%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGG 36
KD + +G GF+ F ++ +M H + G
Sbjct: 137 KDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDG 170
>UNIPROTKB|Q2KJ45 [details] [associations]
symbol:TARDBP "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:NOG145464
HOGENOM:HOG000254792 HOVERGEN:HBG058671 OrthoDB:EOG447FTT
GeneTree:ENSGT00570000079202 EMBL:DAAA02042967 EMBL:DAAA02042968
UniGene:Bt.106561 EMBL:BC105527 IPI:IPI00695185 SMR:Q2KJ45
STRING:Q2KJ45 Ensembl:ENSBTAT00000033464 InParanoid:Q2KJ45
Uniprot:Q2KJ45
Length = 298
Score = 105 (42.0 bits), Expect = 5.6e-08, Sum P(2) = 5.6e-08
Identities = 15/34 (44%), Positives = 29/34 (85%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK 135
+K+FVGR ++ TA++LR++F ++G ++DV++PK
Sbjct: 191 RKVFVGRCTEDMTADELRQFFCQYGEVVDVFIPK 224
Score = 43 (20.2 bits), Expect = 5.6e-08, Sum P(2) = 5.6e-08
Identities = 9/34 (26%), Positives = 16/34 (47%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGG 36
KD + +G GF+ F ++ +M H + G
Sbjct: 137 KDIKTGHSKGFGFVRFTEYETQVKVMSQRHMIDG 170
>UNIPROTKB|B1AKP7 [details] [associations]
symbol:TARDBP "TAR DNA-binding protein 43" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL109811
HOGENOM:HOG000254792 HOVERGEN:HBG058671 UniGene:Hs.300624
HGNC:HGNC:11571 ChiTaRS:TARDBP IPI:IPI00639819 SMR:B1AKP7
Ensembl:ENST00000315091 Uniprot:B1AKP7
Length = 295
Score = 103 (41.3 bits), Expect = 7.1e-08, Sum P(2) = 7.1e-08
Identities = 15/34 (44%), Positives = 28/34 (82%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK 135
+K+FVGR ++ T ++LR +FS++G ++DV++PK
Sbjct: 191 RKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPK 224
Score = 44 (20.5 bits), Expect = 7.1e-08, Sum P(2) = 7.1e-08
Identities = 9/34 (26%), Positives = 16/34 (47%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGG 36
KD + +G GF+ F ++ +M H + G
Sbjct: 137 KDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDG 170
>UNIPROTKB|B4DJ45 [details] [associations]
symbol:TARDBP "cDNA FLJ58188, highly similar to TAR
DNA-binding protein 43" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0003677 Gene3D:3.30.70.330 EMBL:AL109811
HOGENOM:HOG000254792 HOVERGEN:HBG058671 UniGene:Hs.300624
HGNC:HGNC:11571 ChiTaRS:TARDBP EMBL:AK295920 IPI:IPI00910355
SMR:B4DJ45 STRING:B4DJ45 Ensembl:ENST00000439080 UCSC:uc010oap.2
Uniprot:B4DJ45
Length = 298
Score = 103 (41.3 bits), Expect = 7.3e-08, Sum P(2) = 7.3e-08
Identities = 15/34 (44%), Positives = 28/34 (82%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK 135
+K+FVGR ++ T ++LR +FS++G ++DV++PK
Sbjct: 75 RKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPK 108
Score = 44 (20.5 bits), Expect = 7.3e-08, Sum P(2) = 7.3e-08
Identities = 9/34 (26%), Positives = 16/34 (47%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGG 36
KD + +G GF+ F ++ +M H + G
Sbjct: 21 KDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDG 54
>UNIPROTKB|G3V162 [details] [associations]
symbol:TARDBP "TAR DNA-binding protein 43" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 EMBL:CH471130 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL109811 UniGene:Hs.300624 HGNC:HGNC:11571 ChiTaRS:TARDBP
ProteinModelPortal:G3V162 SMR:G3V162 PRIDE:G3V162
Ensembl:ENST00000473869 ArrayExpress:G3V162 Bgee:G3V162
Uniprot:G3V162
Length = 298
Score = 103 (41.3 bits), Expect = 7.3e-08, Sum P(2) = 7.3e-08
Identities = 15/34 (44%), Positives = 28/34 (82%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK 135
+K+FVGR ++ T ++LR +FS++G ++DV++PK
Sbjct: 191 RKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPK 224
Score = 44 (20.5 bits), Expect = 7.3e-08, Sum P(2) = 7.3e-08
Identities = 9/34 (26%), Positives = 16/34 (47%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGG 36
KD + +G GF+ F ++ +M H + G
Sbjct: 137 KDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDG 170
>ZFIN|ZDB-GENE-031030-1 [details] [associations]
symbol:tardbpl "TAR DNA binding protein, like"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-031030-1 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HSSP:Q14103 HOGENOM:HOG000254792
HOVERGEN:HBG058671 GeneTree:ENSGT00570000079202 OMA:PSISRIF
EMBL:CR381616 EMBL:BC044405 IPI:IPI00504192 RefSeq:NP_938178.1
UniGene:Dr.33664 SMR:Q803N5 STRING:Q803N5
Ensembl:ENSDART00000027255 GeneID:386630 KEGG:dre:386630 CTD:386630
InParanoid:Q803N5 NextBio:20813960 Uniprot:Q803N5
Length = 303
Score = 103 (41.3 bits), Expect = 7.8e-08, Sum P(2) = 7.8e-08
Identities = 15/34 (44%), Positives = 28/34 (82%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK 135
+K+FVGR ++ TA++LR++F ++G + DV++PK
Sbjct: 197 RKVFVGRCTEDMTADELRQFFMQYGEVTDVFIPK 230
Score = 44 (20.5 bits), Expect = 7.8e-08, Sum P(2) = 7.8e-08
Identities = 9/34 (26%), Positives = 16/34 (47%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGG 36
+D S +G GF+ F ++ +M H + G
Sbjct: 138 RDAKSGNSKGFGFVRFTDYETQIKVMSQRHMIDG 171
>ZFIN|ZDB-GENE-030131-3777 [details] [associations]
symbol:tardbp "TAR DNA binding protein"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0007626 "locomotory behavior" evidence=IMP] [GO:0048675 "axon
extension" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-3777 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0007626 GO:GO:0003676 GO:GO:0048675 HSSP:Q14103 CTD:23435
eggNOG:NOG145464 HOGENOM:HOG000254792 HOVERGEN:HBG058671
OrthoDB:EOG447FTT GeneTree:ENSGT00570000079202 EMBL:BX663614
EMBL:BC049348 IPI:IPI00495103 RefSeq:NP_958884.1 UniGene:Dr.2409
SMR:Q802C7 STRING:Q802C7 Ensembl:ENSDART00000058555 GeneID:325052
KEGG:dre:325052 InParanoid:Q802C7 NextBio:20809098 Uniprot:Q802C7
Length = 412
Score = 105 (42.0 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 19/49 (38%), Positives = 33/49 (67%)
Query: 87 PGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK 135
P S G E + +K+FVGR ++ TA++LR++F ++G + DV++PK
Sbjct: 184 PNSKQGIDEPMR--SRKVFVGRCTEDMTADELRQFFMQYGEVTDVFIPK 230
Score = 44 (20.5 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 7/26 (26%), Positives = 13/26 (50%)
Query: 11 RGIGFITFASADSVENLMVDTHELGG 36
+G GF+ F ++ +M H + G
Sbjct: 151 KGFGFVRFGDWETQSKVMTQRHMIDG 176
>UNIPROTKB|G3MX91 [details] [associations]
symbol:TARDBP "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=IEA] [GO:0043922 "negative regulation by host of viral
transcription" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003730 "mRNA
3'-UTR binding" evidence=IEA] [GO:0003690 "double-stranded DNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0008380
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0003690
GO:GO:0043922 GO:GO:0070935 CTD:23435 OMA:QFFSQYG
GeneTree:ENSGT00570000079202 EMBL:DAAA02042967 EMBL:DAAA02042968
RefSeq:NP_001039950.2 UniGene:Bt.106561 Ensembl:ENSBTAT00000065252
GeneID:540632 KEGG:bta:540632 NextBio:20878740 Uniprot:G3MX91
Length = 414
Score = 105 (42.0 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 15/34 (44%), Positives = 29/34 (85%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK 135
+K+FVGR ++ TA++LR++F ++G ++DV++PK
Sbjct: 191 RKVFVGRCTEDMTADELRQFFCQYGEVVDVFIPK 224
Score = 43 (20.2 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 9/34 (26%), Positives = 16/34 (47%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGG 36
KD + +G GF+ F ++ +M H + G
Sbjct: 137 KDIKTGHSKGFGFVRFTEYETQVKVMSQRHMIDG 170
>UNIPROTKB|E2QS43 [details] [associations]
symbol:TARDBP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=IEA] [GO:0043922 "negative regulation by host of viral
transcription" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003730 "mRNA
3'-UTR binding" evidence=IEA] [GO:0003690 "double-stranded DNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0008380
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0003690
GO:GO:0043922 GO:GO:0070935 CTD:23435 OMA:QFFSQYG
GeneTree:ENSGT00570000079202 EMBL:AAEX03001938 RefSeq:XP_535409.3
Ensembl:ENSCAFT00000026536 GeneID:478234 KEGG:cfa:478234
NextBio:20853591 Uniprot:E2QS43
Length = 414
Score = 105 (42.0 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 15/34 (44%), Positives = 29/34 (85%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK 135
+K+FVGR ++ TA++LR++F ++G ++DV++PK
Sbjct: 191 RKVFVGRCTEDMTADELRQFFCQYGEVVDVFIPK 224
Score = 43 (20.2 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 9/34 (26%), Positives = 16/34 (47%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGG 36
KD + +G GF+ F ++ +M H + G
Sbjct: 137 KDIKTGHSKGFGFVRFTEYETQVKVMSQRHMIDG 170
>MGI|MGI:2387629 [details] [associations]
symbol:Tardbp "TAR DNA binding protein" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003690 "double-stranded DNA binding"
evidence=ISO] [GO:0003723 "RNA binding" evidence=ISO] [GO:0003730
"mRNA 3'-UTR binding" evidence=ISO] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=ISO] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=ISO] [GO:0043922 "negative regulation by host of
viral transcription" evidence=ISO] [GO:0070935 "3'-UTR-mediated
mRNA stabilization" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:2387629 GO:GO:0005634 GO:GO:0006355 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0006351
GO:GO:0003730 GO:GO:0003690 GO:GO:0043922 GO:GO:0070935
UniGene:Mm.378962 CTD:23435 eggNOG:NOG145464 HOGENOM:HOG000254792
HOVERGEN:HBG058671 OrthoDB:EOG447FTT OMA:QFFSQYG EMBL:AK133207
EMBL:AK153803 EMBL:BC012873 EMBL:BC025544 EMBL:BC027772
EMBL:BC031126 EMBL:BC033475 IPI:IPI00121758 RefSeq:NP_663531.1
UniGene:Mm.22453 PDB:3D2W PDBsum:3D2W ProteinModelPortal:Q921F2
SMR:Q921F2 STRING:Q921F2 PhosphoSite:Q921F2
REPRODUCTION-2DPAGE:Q921F2 PaxDb:Q921F2 PRIDE:Q921F2
Ensembl:ENSMUST00000084125 GeneID:230908 KEGG:mmu:230908
GeneTree:ENSGT00570000079202 InParanoid:Q3V0E7
EvolutionaryTrace:Q921F2 NextBio:380280 Bgee:Q921F2
CleanEx:MM_TARDBP Genevestigator:Q921F2
GermOnline:ENSMUSG00000041459 Uniprot:Q921F2
Length = 414
Score = 104 (41.7 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
Identities = 15/34 (44%), Positives = 29/34 (85%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK 135
+K+FVGR ++ TAE+L+++F ++G ++DV++PK
Sbjct: 191 RKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPK 224
Score = 44 (20.5 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
Identities = 9/34 (26%), Positives = 16/34 (47%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGG 36
KD + +G GF+ F ++ +M H + G
Sbjct: 137 KDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDG 170
>UNIPROTKB|Q13148 [details] [associations]
symbol:TARDBP "TAR DNA-binding protein 43" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008219 "cell
death" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=TAS] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=TAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0008380 "RNA splicing" evidence=IDA] [GO:0043922
"negative regulation by host of viral transcription" evidence=IDA]
[GO:0003690 "double-stranded DNA binding" evidence=IDA] [GO:0003723
"RNA binding" evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding"
evidence=IDA] [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
GO:GO:0008219 EMBL:CH471130 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003700 GO:GO:0006366 GO:GO:0003730 GO:GO:0003690
Orphanet:803 eggNOG:COG0724 GO:GO:0043922 Orphanet:275872
GO:GO:0070935 EMBL:AL109811 CTD:23435 HOVERGEN:HBG058671
OrthoDB:EOG447FTT EMBL:U23731 EMBL:EF434181 EMBL:EF434182
EMBL:EF434183 EMBL:AK312416 EMBL:CR533534 EMBL:AK222754
EMBL:AL050265 EMBL:BC071657 EMBL:BC095435 IPI:IPI00025815
IPI:IPI00844544 IPI:IPI00971018 PIR:I38977 RefSeq:NP_031401.1
UniGene:Hs.300624 PDB:1WF0 PDB:2CQG PDBsum:1WF0 PDBsum:2CQG
ProteinModelPortal:Q13148 SMR:Q13148 DIP:DIP-31167N IntAct:Q13148
STRING:Q13148 PhosphoSite:Q13148 DMDM:20140568 PaxDb:Q13148
PRIDE:Q13148 DNASU:23435 Ensembl:ENST00000240185 GeneID:23435
KEGG:hsa:23435 UCSC:uc001art.3 GeneCards:GC01P011006
HGNC:HGNC:11571 HPA:CAB003703 HPA:HPA017284 MIM:605078 MIM:612069
neXtProt:NX_Q13148 PharmGKB:PA36336 InParanoid:Q13148 OMA:QFFSQYG
PhylomeDB:Q13148 ChiTaRS:TARDBP EvolutionaryTrace:Q13148
GenomeRNAi:23435 NextBio:45695 ArrayExpress:Q13148 Bgee:Q13148
CleanEx:HS_TARDBP Genevestigator:Q13148 GermOnline:ENSG00000120948
Uniprot:Q13148
Length = 414
Score = 103 (41.3 bits), Expect = 2.1e-07, Sum P(2) = 2.1e-07
Identities = 15/34 (44%), Positives = 28/34 (82%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK 135
+K+FVGR ++ T ++LR +FS++G ++DV++PK
Sbjct: 191 RKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPK 224
Score = 44 (20.5 bits), Expect = 2.1e-07, Sum P(2) = 2.1e-07
Identities = 9/34 (26%), Positives = 16/34 (47%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGG 36
KD + +G GF+ F ++ +M H + G
Sbjct: 137 KDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDG 170
>FB|FBgn0036496 [details] [associations]
symbol:CG7804 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:AE014296 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 HSSP:P09651 eggNOG:NOG145464
GeneTree:ENSGT00570000079202 EMBL:AY118452 RefSeq:NP_648764.1
UniGene:Dm.13628 SMR:Q9VUN2 EnsemblMetazoa:FBtr0075617
EnsemblMetazoa:FBtr0332815 GeneID:39665 KEGG:dme:Dmel_CG7804
UCSC:CG7804-RA FlyBase:FBgn0036496 InParanoid:Q9VUN2 OMA:EPKHNNS
OrthoDB:EOG43XSK6 GenomeRNAi:39665 NextBio:814765 Uniprot:Q9VUN2
Length = 318
Score = 124 (48.7 bits), Expect = 2.4e-07, P = 2.4e-07
Identities = 28/75 (37%), Positives = 45/75 (60%)
Query: 62 YGAYNAYISAAT-RYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRR 120
+G+Y+ + + R++ G P S RG +Q GK +FVGR ++ A+DLR
Sbjct: 155 FGSYDVQMHVLSKRHSIDGRWCEVKVPAS---RGMGNQEPGK-VFVGRCTEDIEADDLRE 210
Query: 121 YFSRFGRILDVYVPK 135
YFS+FG ++DV++PK
Sbjct: 211 YFSKFGEVIDVFIPK 225
>WB|WBGene00019249 [details] [associations]
symbol:H28G03.1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00390000002308 EMBL:FO081568 RefSeq:NP_741783.1
UniGene:Cel.17692 ProteinModelPortal:H2L0D0 SMR:H2L0D0 PRIDE:H2L0D0
EnsemblMetazoa:H28G03.1a.1 EnsemblMetazoa:H28G03.1a.2 GeneID:180791
KEGG:cel:CELE_H28G03.1 CTD:180791 WormBase:H28G03.1a OMA:HIVNERK
Uniprot:H2L0D0
Length = 336
Score = 108 (43.1 bits), Expect = 2.7e-07, Sum P(2) = 2.7e-07
Identities = 24/47 (51%), Positives = 30/47 (63%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKE 48
+D +K RG GF+TFAS S E+ M D H+LGG TV RA P+E
Sbjct: 103 RDPNTKHSRGFGFVTFASIFSAESAMNDRPHKLGGKTVDSKRAIPRE 149
Score = 35 (17.4 bits), Expect = 2.7e-07, Sum P(2) = 2.7e-07
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 114 TAEDLRRYFSRFGRILDVYV 133
+ + LR YF FG + V +
Sbjct: 181 SVDSLRVYFETFGTLDQVEI 200
>UNIPROTKB|F1NBY1 [details] [associations]
symbol:TARDBP "TAR DNA-binding protein 43" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003690 "double-stranded DNA binding" evidence=IEA] [GO:0003730
"mRNA 3'-UTR binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0043922
"negative regulation by host of viral transcription" evidence=IEA]
[GO:0070935 "3'-UTR-mediated mRNA stabilization" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0003690 GO:GO:0070935
IPI:IPI00596633 OMA:QFFSQYG GeneTree:ENSGT00570000079202
EMBL:AADN02040753 PRIDE:F1NBY1 Ensembl:ENSGALT00000004585
Uniprot:F1NBY1
Length = 414
Score = 103 (41.3 bits), Expect = 2.7e-07, Sum P(2) = 2.7e-07
Identities = 14/34 (41%), Positives = 30/34 (88%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK 135
+K+FVGR ++ TA++L+++F+++G ++DV++PK
Sbjct: 191 RKVFVGRCTEDMTADELQQFFAQYGEVVDVFIPK 224
Score = 43 (20.2 bits), Expect = 2.7e-07, Sum P(2) = 2.7e-07
Identities = 9/34 (26%), Positives = 16/34 (47%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGG 36
KD + +G GF+ F ++ +M H + G
Sbjct: 137 KDIKTGHSKGFGFVRFTDYETQVKVMSQRHMIDG 170
>UNIPROTKB|Q5ZLN5 [details] [associations]
symbol:TARDBP "TAR DNA-binding protein 43" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0006355 GO:GO:0008380 GO:GO:0000166 GO:GO:0003677
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
EMBL:AJ719699 IPI:IPI00596633 RefSeq:NP_001026049.1
UniGene:Gga.16753 HSSP:Q13148 ProteinModelPortal:Q5ZLN5 SMR:Q5ZLN5
STRING:Q5ZLN5 PRIDE:Q5ZLN5 GeneID:419453 KEGG:gga:419453 CTD:23435
eggNOG:NOG145464 HOGENOM:HOG000254792 HOVERGEN:HBG058671
InParanoid:Q5ZLN5 OrthoDB:EOG447FTT NextBio:20822507 Uniprot:Q5ZLN5
Length = 414
Score = 103 (41.3 bits), Expect = 2.7e-07, Sum P(2) = 2.7e-07
Identities = 14/34 (41%), Positives = 30/34 (88%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK 135
+K+FVGR ++ TA++L+++F+++G ++DV++PK
Sbjct: 191 RKVFVGRCTEDMTADELQQFFAQYGEVVDVFIPK 224
Score = 43 (20.2 bits), Expect = 2.7e-07, Sum P(2) = 2.7e-07
Identities = 9/34 (26%), Positives = 16/34 (47%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGG 36
KD + +G GF+ F ++ +M H + G
Sbjct: 137 KDIKTGHSKGFGFVRFTDYETQVKVMSQRHMIDG 170
>ASPGD|ASPL0000063757 [details] [associations]
symbol:AN10941 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 EMBL:BN001304 ProteinModelPortal:C8VBB9
EnsemblFungi:CADANIAT00000536 HOGENOM:HOG000162494 OMA:MNPAMMQ
Uniprot:C8VBB9
Length = 559
Score = 89 (36.4 bits), Expect = 3.1e-07, Sum P(2) = 3.1e-07
Identities = 15/28 (53%), Positives = 23/28 (82%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILD 130
KIFVG + QEAT +D +++F +FGR++D
Sbjct: 195 KIFVGGVSQEATEQDFKQFFMQFGRVID 222
Score = 84 (34.6 bits), Expect = 3.1e-07, Sum P(2) = 3.1e-07
Identities = 19/59 (32%), Positives = 29/59 (49%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D + RG GF+TF +V +MV H L G + RA P+ D+ ++ GG
Sbjct: 143 RDSATGRSRGFGFLTFKDPKTVNTVMVKEHYLDGKIIDPKRAIPR-DEQEKTSKIFVGG 200
>UNIPROTKB|I3L7S7 [details] [associations]
symbol:LOC100621383 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00570000079202 Ensembl:ENSSSCT00000025708
Uniprot:I3L7S7
Length = 275
Score = 101 (40.6 bits), Expect = 4.4e-07, Sum P(2) = 4.4e-07
Identities = 14/34 (41%), Positives = 29/34 (85%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK 135
+K+FVGR ++ TA++L+++F ++G ++DV++PK
Sbjct: 124 RKVFVGRCTEDMTADELQQFFCQYGEVVDVFIPK 157
Score = 43 (20.2 bits), Expect = 4.4e-07, Sum P(2) = 4.4e-07
Identities = 9/34 (26%), Positives = 16/34 (47%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGG 36
KD + +G GF+ F ++ +M H + G
Sbjct: 70 KDIKTGHSKGFGFVRFTEYETQVKVMSQRHMIDG 103
>TAIR|locus:2129590 [details] [associations]
symbol:AT4G14300 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002687 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:Z97335 EMBL:AL161538 GO:GO:0003676
GO:GO:0030529 eggNOG:COG0724 HOGENOM:HOG000234441 KO:K14411
HSSP:Q61474 EMBL:AJ303457 EMBL:AK226323 IPI:IPI00517003 PIR:G71404
RefSeq:NP_193166.2 UniGene:At.33295 ProteinModelPortal:Q8W034
SMR:Q8W034 IntAct:Q8W034 MINT:MINT-1163850 STRING:Q8W034
PaxDb:O23288 PRIDE:Q8W034 EnsemblPlants:AT4G14300.1 GeneID:827071
KEGG:ath:AT4G14300 TAIR:At4g14300 InParanoid:Q8W034 OMA:YGATNIP
PhylomeDB:Q8W034 ProtClustDB:CLSN2913105 Genevestigator:Q8W034
Uniprot:Q8W034
Length = 411
Score = 121 (47.7 bits), Expect = 8.2e-07, P = 8.2e-07
Identities = 28/67 (41%), Positives = 39/67 (58%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGR-MSHGG 61
DQ + RG GF++F S D+V++++ T H+L G V V RA PK+ + GR M GG
Sbjct: 144 DQATNRPRGFGFVSFDSEDAVDSVLHKTFHDLSGKQVEVKRALPKDANPGGGGRSMGGGG 203
Query: 62 YGAYNAY 68
G Y Y
Sbjct: 204 SGGYQGY 210
>UNIPROTKB|F1M6U1 [details] [associations]
symbol:F1M6U1 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 IPI:IPI00362299 Ensembl:ENSRNOT00000007800
Uniprot:F1M6U1
Length = 252
Score = 86 (35.3 bits), Expect = 1.0e-06, Sum P(2) = 1.0e-06
Identities = 18/52 (34%), Positives = 28/52 (53%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRP 53
+D +K RG GF+T+ + + V+ M H++ G V RA +ED RP
Sbjct: 40 RDPNTKRPRGFGFVTYTTVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRP 91
Score = 74 (31.1 bits), Expect = 1.0e-06, Sum P(2) = 1.0e-06
Identities = 17/39 (43%), Positives = 23/39 (58%)
Query: 95 ESSQRIG-----KKIFVGRLPQEATAEDLRRYFSRFGRI 128
E SQR G KKIFVG + ++ LR YF ++G+I
Sbjct: 86 EDSQRPGAHLTVKKIFVGSIKEDTEEHHLREYFEQYGKI 124
>POMBASE|SPBC660.15 [details] [associations]
symbol:SPBC660.15 "mRNA cleavage factor complex subunit
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=ISO] [GO:0003730 "mRNA 3'-UTR binding"
evidence=NAS] [GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005849 "mRNA cleavage factor
complex" evidence=ISO] [GO:0006378 "mRNA polyadenylation"
evidence=ISO] [GO:0006379 "mRNA cleavage" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPBC660.15 GO:GO:0005737 GO:GO:0000166
EMBL:CU329671 Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0003730
eggNOG:COG0724 GO:GO:0006379 GO:GO:0005849 KO:K14411 HSSP:Q14103
OrthoDB:EOG4TF3VC PIR:T40627 RefSeq:NP_595094.1
ProteinModelPortal:O94432 SMR:O94432 STRING:O94432
EnsemblFungi:SPBC660.15.1 GeneID:2541150 KEGG:spo:SPBC660.15
OMA:CHKANDG NextBio:20802263 Uniprot:O94432
Length = 474
Score = 85 (35.0 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 14/28 (50%), Positives = 22/28 (78%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILD 130
K+FVG +P + T E+ R +F++FGR+LD
Sbjct: 248 KMFVGGVPGDCTEEEFRNFFNQFGRVLD 275
Score = 83 (34.3 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 19/59 (32%), Positives = 29/59 (49%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D + RG GF+TF + V +M H L G + RA P+E+ + +M GG
Sbjct: 196 RDSTTGRSRGFGFLTFKNPKCVNEVMSKEHHLDGKIIDPKRAIPREEQEK-TAKMFVGG 253
>UNIPROTKB|D4A491 [details] [associations]
symbol:D4A491 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OrthoDB:EOG4HQDKF
IPI:IPI00560785 ProteinModelPortal:D4A491
Ensembl:ENSRNOT00000046349 OMA:DNAMEAR Uniprot:D4A491
Length = 239
Score = 92 (37.4 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 19/52 (36%), Positives = 29/52 (55%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRP 53
+D +K RG GF+T+A+ + V+ M H++ G V RA +ED RP
Sbjct: 40 RDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVNGRVVEPKRAVSREDSQRP 91
Score = 62 (26.9 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGR 127
KKIFVG + ++ LR YF ++G+
Sbjct: 98 KKIFVGGIKEDTEEHHLRDYFGQYGK 123
>UNIPROTKB|I3LNA4 [details] [associations]
symbol:LOC100621383 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00570000079202 OMA:PSISRIF EMBL:CU694468
Ensembl:ENSSSCT00000022360 Uniprot:I3LNA4
Length = 413
Score = 101 (40.6 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 14/34 (41%), Positives = 29/34 (85%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK 135
+K+FVGR ++ TA++L+++F ++G ++DV++PK
Sbjct: 190 RKVFVGRCTEDMTADELQQFFCQYGEVVDVFIPK 223
Score = 43 (20.2 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 9/34 (26%), Positives = 16/34 (47%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGG 36
KD + +G GF+ F ++ +M H + G
Sbjct: 136 KDIKTGHSKGFGFVRFTEYETQVKVMSQRHMIDG 169
>DICTYBASE|DDB_G0292422 [details] [associations]
symbol:DDB_G0292422 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0292422 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AAFI02000190 KO:K14411
eggNOG:NOG289504 RefSeq:XP_629598.1 ProteinModelPortal:Q54D98
EnsemblProtists:DDB0233639 GeneID:8628658 KEGG:ddi:DDB_G0292422
InParanoid:Q54D98 OMA:YYEDESS Uniprot:Q54D98
Length = 687
Score = 87 (35.7 bits), Expect = 2.8e-06, Sum P(2) = 2.8e-06
Identities = 16/46 (34%), Positives = 28/46 (60%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKED 49
++ SK+ RG GF+TF ++ +++ H + G V + RA PKE+
Sbjct: 142 EKASKS-RGFGFVTFVDPSVIDEVILINHSIEGKNVEIRRAIPKEE 186
Score = 80 (33.2 bits), Expect = 2.8e-06, Sum P(2) = 2.8e-06
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRI 128
+K+FVG LP+ T++D YFS FG I
Sbjct: 194 QKLFVGGLPKHITSDDFNNYFSEFGEI 220
>UNIPROTKB|F1P5I0 [details] [associations]
symbol:LOC100859627 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:AADN02020007
EMBL:AADN02020008 EMBL:AADN02020009 EMBL:AADN02020010
EMBL:AADN02020011 EMBL:AADN02020012 EMBL:AADN02020013
IPI:IPI00971390 Ensembl:ENSGALT00000015053 Uniprot:F1P5I0
Length = 288
Score = 83 (34.3 bits), Expect = 2.9e-06, Sum P(2) = 2.9e-06
Identities = 17/52 (32%), Positives = 28/52 (53%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRP 53
+D +K RG GF+T++ + V+ M H++ G V RA +ED +P
Sbjct: 42 RDPQTKRSRGFGFVTYSCVEEVDAAMSARPHKVDGRVVEPKRAVSREDSVKP 93
Score = 76 (31.8 bits), Expect = 2.9e-06, Sum P(2) = 2.9e-06
Identities = 15/37 (40%), Positives = 24/37 (64%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKVRQ 138
KKIFVG + ++ +LR YF ++G+I + V + RQ
Sbjct: 100 KKIFVGGIKEDTEEYNLREYFEKYGKIETIEVMEDRQ 136
>UNIPROTKB|F1NBB6 [details] [associations]
symbol:LOC100859627 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:AADN02020007
EMBL:AADN02020008 EMBL:AADN02020009 EMBL:AADN02020010
EMBL:AADN02020011 EMBL:AADN02020012 EMBL:AADN02020013
IPI:IPI00818847 Ensembl:ENSGALT00000029498 Uniprot:F1NBB6
Length = 310
Score = 83 (34.3 bits), Expect = 3.6e-06, Sum P(2) = 3.6e-06
Identities = 17/52 (32%), Positives = 28/52 (53%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRP 53
+D +K RG GF+T++ + V+ M H++ G V RA +ED +P
Sbjct: 54 RDPQTKRSRGFGFVTYSCVEEVDAAMSARPHKVDGRVVEPKRAVSREDSVKP 105
Score = 76 (31.8 bits), Expect = 3.6e-06, Sum P(2) = 3.6e-06
Identities = 15/37 (40%), Positives = 24/37 (64%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKVRQ 138
KKIFVG + ++ +LR YF ++G+I + V + RQ
Sbjct: 112 KKIFVGGIKEDTEEYNLREYFEKYGKIETIEVMEDRQ 148
>FB|FBgn0260943 [details] [associations]
symbol:Rbp6 "RNA-binding protein 6" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=NAS] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
EMBL:AE014296 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005844 eggNOG:COG0724 KO:K14411 GeneTree:ENSGT00700000104255
GO:GO:0048864 OMA:ENYISAA EMBL:AY122226 EMBL:S51715 PIR:F48110
RefSeq:NP_001097631.1 RefSeq:NP_001097632.1 RefSeq:NP_730245.2
UniGene:Dm.22292 HSSP:Q61474 ProteinModelPortal:Q9VVE5 SMR:Q9VVE5
DIP:DIP-19056N IntAct:Q9VVE5 MINT:MINT-918255
EnsemblMetazoa:FBtr0075285 GeneID:39919 KEGG:dme:Dmel_CG32169
UCSC:CG32169-RA CTD:39919 FlyBase:FBgn0260943 InParanoid:Q9VVE5
OrthoDB:EOG4MSBF6 GenomeRNAi:39919 NextBio:816085 Bgee:Q9VVE5
Uniprot:Q9VVE5
Length = 369
Score = 83 (34.3 bits), Expect = 4.8e-06, Sum P(2) = 4.8e-06
Identities = 18/46 (39%), Positives = 27/46 (58%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVD-THELGGSTVVVDRATPK 47
KD ++ RG GF+TF+ +SV+ ++ THEL G V A P+
Sbjct: 62 KDPTTRRSRGFGFVTFSDPNSVDKVLTQGTHELDGKKVDPKVAFPR 107
Score = 77 (32.2 bits), Expect = 4.8e-06, Sum P(2) = 4.8e-06
Identities = 16/29 (55%), Positives = 19/29 (65%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILD 130
KKIFVG L T ED++ YF +FG I D
Sbjct: 118 KKIFVGGLSAPTTLEDVKSYFEQFGPIED 146
>UNIPROTKB|F1M5N1 [details] [associations]
symbol:F1M5N1 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00567689
ProteinModelPortal:F1M5N1 Ensembl:ENSRNOT00000023344 Uniprot:F1M5N1
Length = 207
Score = 86 (35.3 bits), Expect = 4.8e-06, Sum P(2) = 4.8e-06
Identities = 19/52 (36%), Positives = 28/52 (53%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRP 53
+D +K RG GF+T+A+ + V+ M H++ G V RA ED RP
Sbjct: 43 RDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSIEDSQRP 94
Score = 64 (27.6 bits), Expect = 4.8e-06, Sum P(2) = 4.8e-06
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 95 ESSQRIGK----KIFVGRLPQEATAEDLRRYFSRFGR 127
E SQR G KIFVG + ++ LR YF ++G+
Sbjct: 89 EDSQRPGAYLNMKIFVGAIKEDTEEHHLRDYFGQYGK 125
>UNIPROTKB|F1PA19 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 EMBL:AAEX03007693 EMBL:AAEX03007694
Ensembl:ENSCAFT00000000377 OMA:GNDSSYG Uniprot:F1PA19
Length = 264
Score = 86 (35.3 bits), Expect = 4.8e-06, Sum P(2) = 4.8e-06
Identities = 18/33 (54%), Positives = 21/33 (63%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP 134
KKIFVG L EAT E +R YF FG I + +P
Sbjct: 84 KKIFVGGLNPEATEEKIREYFGEFGEIEAIELP 116
Score = 68 (29.0 bits), Expect = 4.8e-06, Sum P(2) = 4.8e-06
Identities = 20/59 (33%), Positives = 28/59 (47%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
D + RG GFI F A SVE ++ H L G + +A + D PV ++ GG
Sbjct: 34 DPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKAMAMKKD--PVKKIFVGG 90
>UNIPROTKB|Q3ZC44 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104347 KO:K13044 InterPro:IPR012956
Pfam:PF08143 CTD:3182 OMA:FILFKDP EMBL:DAAA02020063
EMBL:DAAA02020062 EMBL:BC102923 IPI:IPI00843025
RefSeq:NP_001035612.1 UniGene:Bt.58979 SMR:Q3ZC44
Ensembl:ENSBTAT00000018114 GeneID:513410 KEGG:bta:513410
NextBio:20870841 Uniprot:Q3ZC44
Length = 285
Score = 86 (35.3 bits), Expect = 5.0e-06, Sum P(2) = 5.0e-06
Identities = 18/33 (54%), Positives = 21/33 (63%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP 134
KKIFVG L EAT E +R YF FG I + +P
Sbjct: 154 KKIFVGGLNPEATEEKIREYFGEFGEIEAIELP 186
Score = 69 (29.3 bits), Expect = 5.0e-06, Sum P(2) = 5.0e-06
Identities = 20/59 (33%), Positives = 28/59 (47%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
D + RG GFI F A SVE ++ H L G + +A + D PV ++ GG
Sbjct: 104 DPNTGRSRGFGFILFKDATSVEKVLDQKEHRLDGRVIDPKKAMAMKKD--PVKKIFVGG 160
>UNIPROTKB|F1NIB4 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 EMBL:AADN02028501 EMBL:AADN02028502
EMBL:AADN02028503 IPI:IPI00603451 ProteinModelPortal:F1NIB4
Ensembl:ENSGALT00000023233 ArrayExpress:F1NIB4 Uniprot:F1NIB4
Length = 212
Score = 86 (35.3 bits), Expect = 5.4e-06, Sum P(2) = 5.4e-06
Identities = 18/33 (54%), Positives = 21/33 (63%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP 134
KKIFVG L EAT E +R YF FG I + +P
Sbjct: 84 KKIFVGGLNPEATEEKIREYFGEFGEIEAIELP 116
Score = 64 (27.6 bits), Expect = 5.4e-06, Sum P(2) = 5.4e-06
Identities = 19/59 (32%), Positives = 27/59 (45%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
D + RG GFI F SVE ++ H L G + +A + D PV ++ GG
Sbjct: 34 DPNTGRSRGFGFILFKEPGSVEKVLEQKEHRLDGRLIDPKKAMAMKKD--PVKKIFVGG 90
>MGI|MGI:1330294 [details] [associations]
symbol:Hnrnpab "heterogeneous nuclear ribonucleoprotein A/B"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001837 "epithelial to mesenchymal transition"
evidence=IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=ISO] [GO:0003688 "DNA
replication origin binding" evidence=ISO] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=ISO] [GO:0043565
"sequence-specific DNA binding" evidence=IDA] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1330294 GO:GO:0005634
GO:GO:0005737 GO:GO:0045893 GO:GO:0000166 GO:GO:0003677
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
GO:GO:0001837 UniGene:Mm.490267 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 KO:K13044
InterPro:IPR012956 Pfam:PF08143 CTD:3182 OrthoDB:EOG42BX9K
ChiTaRS:HNRNPAB EMBL:D90151 EMBL:L36663 EMBL:AK076132
IPI:IPI00117288 PIR:JQ0448 RefSeq:NP_034578.1 UniGene:Mm.280842
ProteinModelPortal:Q99020 SMR:Q99020 DIP:DIP-31415N IntAct:Q99020
MINT:MINT-4132837 STRING:Q99020 PhosphoSite:Q99020 PaxDb:Q99020
PRIDE:Q99020 Ensembl:ENSMUST00000074669 GeneID:15384 KEGG:mmu:15384
NextBio:288056 Bgee:Q99020 Genevestigator:Q99020
GermOnline:ENSMUSG00000020358 Uniprot:Q99020
Length = 285
Score = 87 (35.7 bits), Expect = 5.7e-06, Sum P(2) = 5.7e-06
Identities = 18/33 (54%), Positives = 22/33 (66%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP 134
KKIFVG L EAT E +R YF +FG I + +P
Sbjct: 159 KKIFVGGLNPEATEEKIREYFGQFGEIEAIELP 191
Score = 67 (28.6 bits), Expect = 5.7e-06, Sum P(2) = 5.7e-06
Identities = 19/59 (32%), Positives = 28/59 (47%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
D + RG GFI F + SVE ++ H L G + +A + D PV ++ GG
Sbjct: 109 DPNTGRSRGFGFILFKDSSSVEKVLDQKEHRLDGRVIDPKKAMAMKKD--PVKKIFVGG 165
>UNIPROTKB|Q9QX80 [details] [associations]
symbol:Hnrnpab "Hnrpab protein" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 EMBL:CH473948 HOGENOM:HOG000234441 HOVERGEN:HBG002295
HSSP:Q14103 GeneTree:ENSGT00700000104347 KO:K13044
InterPro:IPR012956 Pfam:PF08143 CTD:3182 EMBL:AC105470
EMBL:AF216753 EMBL:BC066664 EMBL:AJ238855 IPI:IPI00212723
PIR:PC4375 PIR:PC4376 PIR:PC4377 RefSeq:NP_112620.2
RefSeq:XP_003750864.1 UniGene:Rn.1427 UniGene:Rn.217734 SMR:Q9QX80
STRING:Q9QX80 Ensembl:ENSRNOT00000033056 GeneID:100910156
GeneID:83498 KEGG:rno:100910156 KEGG:rno:83498 NextBio:615904
Genevestigator:Q9QX80 Uniprot:Q9QX80
Length = 285
Score = 87 (35.7 bits), Expect = 5.7e-06, Sum P(2) = 5.7e-06
Identities = 18/33 (54%), Positives = 22/33 (66%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP 134
KKIFVG L EAT E +R YF +FG I + +P
Sbjct: 159 KKIFVGGLNPEATEEKIREYFGQFGEIEAIELP 191
Score = 67 (28.6 bits), Expect = 5.7e-06, Sum P(2) = 5.7e-06
Identities = 19/59 (32%), Positives = 28/59 (47%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
D + RG GFI F + SVE ++ H L G + +A + D PV ++ GG
Sbjct: 109 DPNTGRSRGFGFILFKDSSSVEKVLDQKEHRLDGRVIDPKKAMAMKKD--PVKKIFVGG 165
>UNIPROTKB|D6R9P3 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441
InterPro:IPR012956 Pfam:PF08143 EMBL:AC136632 HGNC:HGNC:5034
ChiTaRS:HNRNPAB IPI:IPI00964686 ProteinModelPortal:D6R9P3
SMR:D6R9P3 Ensembl:ENST00000515193 ArrayExpress:D6R9P3 Bgee:D6R9P3
Uniprot:D6R9P3
Length = 280
Score = 86 (35.3 bits), Expect = 5.9e-06, Sum P(2) = 5.9e-06
Identities = 18/33 (54%), Positives = 21/33 (63%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP 134
KKIFVG L EAT E +R YF FG I + +P
Sbjct: 154 KKIFVGGLNPEATEEKIREYFGEFGEIEAIELP 186
Score = 68 (29.0 bits), Expect = 5.9e-06, Sum P(2) = 5.9e-06
Identities = 20/59 (33%), Positives = 28/59 (47%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
D + RG GFI F A SVE ++ H L G + +A + D PV ++ GG
Sbjct: 104 DPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKAMAMKKD--PVKKIFVGG 160
>ZFIN|ZDB-GENE-070212-1 [details] [associations]
symbol:dazap1 "DAZ associated protein 1" species:7955
"Danio rerio" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-070212-1 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 OMA:HNLDGRN GeneTree:ENSGT00700000104255
EMBL:BX255969 EMBL:BX323045 IPI:IPI00961610
Ensembl:ENSDART00000104362 Bgee:F1QBG2 Uniprot:F1QBG2
Length = 407
Score = 113 (44.8 bits), Expect = 5.9e-06, P = 5.9e-06
Identities = 36/115 (31%), Positives = 54/115 (46%)
Query: 4 DQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
D + RG GFITF + SV+ + + H++ G V V +A P++ G++ +
Sbjct: 147 DAEKQRPRGFGFITFEAEQSVDQAVNMHFHDIMGKKVEVKKAEPRDSKAPAPGQLGANQW 206
Query: 63 GAYNAYISAATRYAALGAPTL---YDHPGSFYGRGESSQRIGKKIFVGR-LPQEA 113
G A ISAA +AA APT Y G + G+ G + GR P +A
Sbjct: 207 GP-RAIISAANGWAAQPAPTWQQSYGPQGVWVSTGQPLAGYGPPLPAGRGAPAQA 260
Score = 80 (33.2 bits), Expect = 0.00045, Sum P(2) = 0.00045
Identities = 16/37 (43%), Positives = 22/37 (59%)
Query: 95 ESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDV 131
+S KKIFVG +P +LR YF+RFG + +V
Sbjct: 106 KSDSNKSKKIFVGGIPHNCGEAELRDYFNRFGVVTEV 142
Score = 63 (27.2 bits), Expect = 0.00045, Sum P(2) = 0.00045
Identities = 15/47 (31%), Positives = 23/47 (48%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDT--HELGGSTVVVDRATPK 47
KD+ + RG GF+ F + V ++ DT H L G + TP+
Sbjct: 44 KDKSTNQSRGFGFVKFKDPNCVRTVL-DTKPHNLDGRNIDPKPCTPR 89
>UNIPROTKB|D6RD18 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441
InterPro:IPR012956 Pfam:PF08143 EMBL:AC136632 HGNC:HGNC:5034
ChiTaRS:HNRNPAB IPI:IPI00966854 ProteinModelPortal:D6RD18
SMR:D6RD18 Ensembl:ENST00000514633 ArrayExpress:D6RD18 Bgee:D6RD18
Uniprot:D6RD18
Length = 283
Score = 86 (35.3 bits), Expect = 6.1e-06, Sum P(2) = 6.1e-06
Identities = 18/33 (54%), Positives = 21/33 (63%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP 134
KKIFVG L EAT E +R YF FG I + +P
Sbjct: 154 KKIFVGGLNPEATEEKIREYFGEFGEIEAIELP 186
Score = 68 (29.0 bits), Expect = 6.1e-06, Sum P(2) = 6.1e-06
Identities = 20/59 (33%), Positives = 28/59 (47%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
D + RG GFI F A SVE ++ H L G + +A + D PV ++ GG
Sbjct: 104 DPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKAMAMKKD--PVKKIFVGG 160
>RGD|2321074 [details] [associations]
symbol:LOC100360986 "mCG1035404-like" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:2321074 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
OrthoDB:EOG4HQDKF InterPro:IPR021662 Pfam:PF11627 IPI:IPI00559028
PRIDE:D4ACQ0 Ensembl:ENSRNOT00000002122 UCSC:RGD:2321074
ArrayExpress:D4ACQ0 Uniprot:D4ACQ0
Length = 320
Score = 83 (34.3 bits), Expect = 6.4e-06, Sum P(2) = 6.4e-06
Identities = 17/52 (32%), Positives = 28/52 (53%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRP 53
+D +K RG GF+T++ + V+ M H++ G V RA +ED +P
Sbjct: 68 RDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKP 119
Score = 74 (31.1 bits), Expect = 6.4e-06, Sum P(2) = 6.4e-06
Identities = 15/37 (40%), Positives = 24/37 (64%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKVRQ 138
KKIFVG + ++ +LR YF ++G+I + V + RQ
Sbjct: 126 KKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQ 162
>TAIR|locus:2077392 [details] [associations]
symbol:AT3G07810 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005576 "extracellular region" evidence=ISM] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K14411 IPI:IPI00546643 RefSeq:NP_850539.1 UniGene:At.19375
ProteinModelPortal:F4JFN7 SMR:F4JFN7 PRIDE:F4JFN7
EnsemblPlants:AT3G07810.2 GeneID:819972 KEGG:ath:AT3G07810
OMA:YYIGNTN Uniprot:F4JFN7
Length = 495
Score = 105 (42.0 bits), Expect = 5.8e-05, P = 5.8e-05
Identities = 22/46 (47%), Positives = 30/46 (65%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKE 48
D ++ RG GFIT+ S ++VE +++ T HEL G V V RA PKE
Sbjct: 142 DHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMVEVKRAVPKE 187
Score = 83 (34.3 bits), Expect = 6.4e-06, Sum P(2) = 6.4e-06
Identities = 16/32 (50%), Positives = 19/32 (59%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYV 133
+KIFVG LP T D + YF +FG DV V
Sbjct: 108 RKIFVGGLPSSVTESDFKTYFEQFGTTTDVVV 139
Score = 79 (32.9 bits), Expect = 6.4e-06, Sum P(2) = 6.4e-06
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKED 49
KD+ + RG GF+ FA E ++ + H + G V +A P++D
Sbjct: 39 KDRTTGRARGFGFVVFADPAVAEIVITEKHNIDGRLVEAKKAVPRDD 85
>UNIPROTKB|E7EWI9 [details] [associations]
symbol:HNRNPA3 "Heterogeneous nuclear ribonucleoprotein A3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC079305 HGNC:HGNC:24941
ChiTaRS:HNRNPA3 IPI:IPI00939124 ProteinModelPortal:E7EWI9
SMR:E7EWI9 Ensembl:ENST00000416446 ArrayExpress:E7EWI9 Bgee:E7EWI9
Uniprot:E7EWI9
Length = 322
Score = 83 (34.3 bits), Expect = 6.5e-06, Sum P(2) = 6.5e-06
Identities = 17/52 (32%), Positives = 28/52 (53%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRP 53
+D +K RG GF+T++ + V+ M H++ G V RA +ED +P
Sbjct: 46 RDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKP 97
Score = 74 (31.1 bits), Expect = 6.5e-06, Sum P(2) = 6.5e-06
Identities = 15/37 (40%), Positives = 24/37 (64%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKVRQ 138
KKIFVG + ++ +LR YF ++G+I + V + RQ
Sbjct: 104 KKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQ 140
>UNIPROTKB|E1BZE6 [details] [associations]
symbol:LOC100859627 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0071013
GeneTree:ENSGT00700000104376 OMA:QGHDPKE EMBL:AADN02020007
EMBL:AADN02020008 EMBL:AADN02020009 EMBL:AADN02020010
EMBL:AADN02020011 EMBL:AADN02020012 EMBL:AADN02020013
IPI:IPI00812068 ProteinModelPortal:E1BZE6
Ensembl:ENSGALT00000038715 Uniprot:E1BZE6
Length = 380
Score = 83 (34.3 bits), Expect = 6.5e-06, Sum P(2) = 6.5e-06
Identities = 17/52 (32%), Positives = 28/52 (53%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRP 53
+D +K RG GF+T++ + V+ M H++ G V RA +ED +P
Sbjct: 66 RDPQTKRSRGFGFVTYSCVEEVDAAMSARPHKVDGRVVEPKRAVSREDSVKP 117
Score = 76 (31.8 bits), Expect = 6.5e-06, Sum P(2) = 6.5e-06
Identities = 15/37 (40%), Positives = 24/37 (64%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKVRQ 138
KKIFVG + ++ +LR YF ++G+I + V + RQ
Sbjct: 124 KKIFVGGIKEDTEEYNLREYFEKYGKIETIEVMEDRQ 160
Score = 56 (24.8 bits), Expect = 0.00071, Sum P(2) = 0.00071
Identities = 16/46 (34%), Positives = 19/46 (41%)
Query: 49 DDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSFYGRG 94
D + G + G YG Y S Y G P Y +PG YG G
Sbjct: 263 DGYNGFGDVKGGNYGGGPGYGSRGG-YGGGGGPG-YGNPGGGYGGG 306
>RGD|69255 [details] [associations]
symbol:Hnrnpab "heterogeneous nuclear ribonucleoprotein A/B"
species:10116 "Rattus norvegicus" [GO:0001837 "epithelial to
mesenchymal transition" evidence=ISO] [GO:0003677 "DNA binding"
evidence=IDA] [GO:0003688 "DNA replication origin binding"
evidence=IDA] [GO:0005634 "nucleus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0030529 "ribonucleoprotein complex"
evidence=ISO] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IDA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISO] [GO:0043565
"sequence-specific DNA binding" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0045892 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003688 HOVERGEN:HBG002295 HSSP:Q14103 InterPro:IPR012956
Pfam:PF08143 PIR:PC4375 PIR:PC4376 PIR:PC4377 UniGene:Rn.1427
UniGene:Rn.217734 EMBL:AF108653 IPI:IPI00208193
ProteinModelPortal:Q9Z0U8 SMR:Q9Z0U8 IntAct:Q9Z0U8 MINT:MINT-7138483
STRING:Q9Z0U8 PRIDE:Q9Z0U8 UCSC:RGD:69255 Genevestigator:Q9Z0U8
Uniprot:Q9Z0U8
Length = 298
Score = 87 (35.7 bits), Expect = 6.6e-06, Sum P(2) = 6.6e-06
Identities = 18/33 (54%), Positives = 22/33 (66%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP 134
KKIFVG L EAT E +R YF +FG I + +P
Sbjct: 172 KKIFVGGLNPEATEEKIREYFGQFGEIEAIELP 204
Score = 67 (28.6 bits), Expect = 6.6e-06, Sum P(2) = 6.6e-06
Identities = 19/59 (32%), Positives = 28/59 (47%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
D + RG GFI F + SVE ++ H L G + +A + D PV ++ GG
Sbjct: 122 DPNTGRSRGFGFILFKDSSSVEKVLDQKEHRLDGRVIDPKKAMAMKKD--PVKKIFVGG 178
>ZFIN|ZDB-GENE-030826-25 [details] [associations]
symbol:msi2a "musashi homolog 2a (Drosophila)"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-030826-25 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
GeneTree:ENSGT00700000104255 OrthoDB:EOG48GW3J HSSP:Q61474
EMBL:CR931799 EMBL:CR931806 EMBL:BC045335 IPI:IPI00489753
RefSeq:NP_997961.1 UniGene:Dr.32677 SMR:Q7ZW10
Ensembl:ENSDART00000099473 Ensembl:ENSDART00000132096
GeneID:100002680 KEGG:dre:100002680 CTD:100002680 InParanoid:Q7ZW10
OMA:MEADASQ NextBio:20785547 Uniprot:Q7ZW10
Length = 388
Score = 81 (33.6 bits), Expect = 6.9e-06, Sum P(2) = 6.9e-06
Identities = 20/55 (36%), Positives = 28/55 (50%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTH-ELGGSTVVVDRATPKEDDFRPVGR 56
+D +K RG GFITFA SV+ ++ H EL T+ A P+ + V R
Sbjct: 54 RDPTTKRSRGFGFITFADVSSVDKVLAQPHHELDSKTIDPKVAFPRRAQPKMVTR 108
Score = 79 (32.9 bits), Expect = 6.9e-06, Sum P(2) = 6.9e-06
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILD 130
KKIFVG L ED+++YF +FG++ D
Sbjct: 110 KKIFVGGLSASTVVEDVKQYFEQFGKVED 138
>UNIPROTKB|E2R5N6 [details] [associations]
symbol:E2R5N6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03012109
Ensembl:ENSCAFT00000010232 OMA:EMASASC Uniprot:E2R5N6
Length = 322
Score = 87 (35.7 bits), Expect = 8.3e-06, Sum P(2) = 8.3e-06
Identities = 18/52 (34%), Positives = 28/52 (53%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRP 53
+D +K RG GF+T+ + + V+ M H++ G V R + KED RP
Sbjct: 47 RDPNTKRSRGFGFVTYTAVEEVDPAMHARPHKVDGRVVEPKRTSSKEDSQRP 98
Score = 67 (28.6 bits), Expect = 8.3e-06, Sum P(2) = 8.3e-06
Identities = 16/39 (41%), Positives = 22/39 (56%)
Query: 95 ESSQRIG-----KKIFVGRLPQEATAEDLRRYFSRFGRI 128
E SQR G KKIF G + ++ LR YF ++G+I
Sbjct: 93 EDSQRPGAHLTVKKIFAGGIKEDTEEHHLRDYFEQYGKI 131
>UNIPROTKB|F1LNG4 [details] [associations]
symbol:Hnrnpa3 "Heterogeneous nuclear ribonucleoprotein A3"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00567786 Ensembl:ENSRNOT00000050735 ArrayExpress:F1LNG4
Uniprot:F1LNG4
Length = 357
Score = 83 (34.3 bits), Expect = 8.8e-06, Sum P(2) = 8.8e-06
Identities = 17/52 (32%), Positives = 28/52 (53%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRP 53
+D +K RG GF+T++ + V+ M H++ G V RA +ED +P
Sbjct: 46 RDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKP 97
Score = 74 (31.1 bits), Expect = 8.8e-06, Sum P(2) = 8.8e-06
Identities = 15/37 (40%), Positives = 24/37 (64%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKVRQ 138
KKIFVG + ++ +LR YF ++G+I + V + RQ
Sbjct: 104 KKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQ 140
>UNIPROTKB|E9PTS0 [details] [associations]
symbol:Hnrnpab "Protein Hnrnpab" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR012956 Pfam:PF08143 EMBL:AC105470 IPI:IPI00951862
Ensembl:ENSRNOT00000065584 ArrayExpress:E9PTS0 Uniprot:E9PTS0
Length = 331
Score = 87 (35.7 bits), Expect = 9.1e-06, Sum P(2) = 9.1e-06
Identities = 18/33 (54%), Positives = 22/33 (66%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP 134
KKIFVG L EAT E +R YF +FG I + +P
Sbjct: 158 KKIFVGGLNPEATEEKIREYFGQFGEIEAIELP 190
Score = 67 (28.6 bits), Expect = 9.1e-06, Sum P(2) = 9.1e-06
Identities = 19/59 (32%), Positives = 28/59 (47%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
D + RG GFI F + SVE ++ H L G + +A + D PV ++ GG
Sbjct: 108 DPNTGRSRGFGFILFKDSSSVEKVLDQKEHRLDGRVIDPKKAMAMKKD--PVKKIFVGG 164
>UNIPROTKB|Q9QX81 [details] [associations]
symbol:Hnrnpab "RCG34663, isoform CRA_a" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0001837 "epithelial to mesenchymal transition" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0043565
"sequence-specific DNA binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0005634 GO:GO:0005737 GO:GO:0045893 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529 GO:GO:0001837
EMBL:CH473948 HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103
GeneTree:ENSGT00700000104347 KO:K13044 InterPro:IPR012956
Pfam:PF08143 OMA:FILFKDP OrthoDB:EOG42BX9K EMBL:AC105470 PIR:PC4375
PIR:PC4376 PIR:PC4377 UniGene:Rn.1427 UniGene:Rn.217734
GeneID:100910156 KEGG:rno:100910156 EMBL:AJ238854 IPI:IPI00212724
RefSeq:XP_003750865.1 SMR:Q9QX81 STRING:Q9QX81
Ensembl:ENSRNOT00000004885 InParanoid:Q9QX81 Genevestigator:Q9QX81
Uniprot:Q9QX81
Length = 332
Score = 87 (35.7 bits), Expect = 9.2e-06, Sum P(2) = 9.2e-06
Identities = 18/33 (54%), Positives = 22/33 (66%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP 134
KKIFVG L EAT E +R YF +FG I + +P
Sbjct: 159 KKIFVGGLNPEATEEKIREYFGQFGEIEAIELP 191
Score = 67 (28.6 bits), Expect = 9.2e-06, Sum P(2) = 9.2e-06
Identities = 19/59 (32%), Positives = 28/59 (47%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
D + RG GFI F + SVE ++ H L G + +A + D PV ++ GG
Sbjct: 109 DPNTGRSRGFGFILFKDSSSVEKVLDQKEHRLDGRVIDPKKAMAMKKD--PVKKIFVGG 165
>UNIPROTKB|D6RBZ0 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441
InterPro:IPR012956 Pfam:PF08143 EMBL:AC136632 HGNC:HGNC:5034
ChiTaRS:HNRNPAB IPI:IPI00964992 ProteinModelPortal:D6RBZ0
SMR:D6RBZ0 Ensembl:ENST00000506339 ArrayExpress:D6RBZ0 Bgee:D6RBZ0
Uniprot:D6RBZ0
Length = 327
Score = 86 (35.3 bits), Expect = 9.7e-06, Sum P(2) = 9.7e-06
Identities = 18/33 (54%), Positives = 21/33 (63%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP 134
KKIFVG L EAT E +R YF FG I + +P
Sbjct: 154 KKIFVGGLNPEATEEKIREYFGEFGEIEAIELP 186
Score = 68 (29.0 bits), Expect = 9.7e-06, Sum P(2) = 9.7e-06
Identities = 20/59 (33%), Positives = 28/59 (47%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
D + RG GFI F A SVE ++ H L G + +A + D PV ++ GG
Sbjct: 104 DPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKAMAMKKD--PVKKIFVGG 160
>UNIPROTKB|E2RFV7 [details] [associations]
symbol:HNRNPA3 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K12741 GeneTree:ENSGT00700000104376 CTD:220988 OMA:QGHDPKE
EMBL:AAEX03017802 RefSeq:XP_543761.2 ProteinModelPortal:E2RFV7
Ensembl:ENSCAFT00000021410 GeneID:608074 KEGG:cfa:608074
Uniprot:E2RFV7
Length = 378
Score = 83 (34.3 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 17/52 (32%), Positives = 28/52 (53%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRP 53
+D +K RG GF+T++ + V+ M H++ G V RA +ED +P
Sbjct: 68 RDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKP 119
Score = 74 (31.1 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 15/37 (40%), Positives = 24/37 (64%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKVRQ 138
KKIFVG + ++ +LR YF ++G+I + V + RQ
Sbjct: 126 KKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQ 162
>UNIPROTKB|P51991 [details] [associations]
symbol:HNRNPA3 "Heterogeneous nuclear ribonucleoprotein A3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC;TAS] [GO:0030529
"ribonucleoprotein complex" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] Reactome:REACT_71
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH471058
GO:GO:0000398 GO:GO:0071013 eggNOG:COG0724 HOVERGEN:HBG002295
EMBL:AC079305 HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF
HPA:HPA001666 EMBL:AY363225 EMBL:BC112027 EMBL:BC113470
IPI:IPI00419373 IPI:IPI00455134 PIR:I52962 RefSeq:NP_919223.1
UniGene:Hs.516539 ProteinModelPortal:P51991 SMR:P51991
IntAct:P51991 MINT:MINT-4999802 STRING:P51991 PhosphoSite:P51991
DMDM:51338779 PaxDb:P51991 PRIDE:P51991 Ensembl:ENST00000392524
Ensembl:ENST00000411529 Ensembl:ENST00000435711 GeneID:220988
KEGG:hsa:220988 UCSC:uc002ulb.1 CTD:220988 GeneCards:GC02P178077
HGNC:HGNC:24941 MIM:605372 neXtProt:NX_P51991 PharmGKB:PA162391169
InParanoid:P51991 OMA:QGHDPKE PhylomeDB:P51991 ChiTaRS:HNRNPA3
GenomeRNAi:220988 NextBio:91133 PMAP-CutDB:P51991
ArrayExpress:P51991 Bgee:P51991 CleanEx:HS_HNRNPA3
Genevestigator:P51991 GermOnline:ENSG00000170144 Uniprot:P51991
Length = 378
Score = 83 (34.3 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 17/52 (32%), Positives = 28/52 (53%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRP 53
+D +K RG GF+T++ + V+ M H++ G V RA +ED +P
Sbjct: 68 RDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKP 119
Score = 74 (31.1 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 15/37 (40%), Positives = 24/37 (64%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKVRQ 138
KKIFVG + ++ +LR YF ++G+I + V + RQ
Sbjct: 126 KKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQ 162
>UNIPROTKB|F2Z5B4 [details] [associations]
symbol:HNRNPA3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0071013 KO:K12741
GeneTree:ENSGT00700000104376 OMA:QGHDPKE EMBL:CU862048
RefSeq:XP_003133549.1 ProteinModelPortal:F2Z5B4 SMR:F2Z5B4
Ensembl:ENSSSCT00000017409 GeneID:100516520 KEGG:ssc:100516520
Uniprot:F2Z5B4
Length = 379
Score = 83 (34.3 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 17/52 (32%), Positives = 28/52 (53%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRP 53
+D +K RG GF+T++ + V+ M H++ G V RA +ED +P
Sbjct: 68 RDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKP 119
Score = 74 (31.1 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 15/37 (40%), Positives = 24/37 (64%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKVRQ 138
KKIFVG + ++ +LR YF ++G+I + V + RQ
Sbjct: 126 KKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQ 162
>RGD|727807 [details] [associations]
symbol:Hnrnpa3 "heterogeneous nuclear ribonucleoprotein A3"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IMP] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0005730 "nucleolus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0035770
"ribonucleoprotein granule" evidence=IDA] [GO:0043005 "neuron
projection" evidence=IDA] [GO:0051028 "mRNA transport"
evidence=IMP] [GO:0051033 "RNA transmembrane transporter activity"
evidence=IMP] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:727807 GO:GO:0005634
GO:GO:0005737 GO:GO:0008380 GO:GO:0000166 GO:GO:0003729
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0043005 GO:GO:0005681
GO:GO:0051028 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF CTD:220988
EMBL:AY363226 EMBL:AY363227 EMBL:BC081878 IPI:IPI00382376
IPI:IPI00464458 RefSeq:NP_001104764.1 RefSeq:NP_001104765.1
RefSeq:NP_937765.1 UniGene:Rn.107690 UniGene:Rn.99947
ProteinModelPortal:Q6URK4 SMR:Q6URK4 STRING:Q6URK4
PhosphoSite:Q6URK4 PRIDE:Q6URK4 GeneID:362152 KEGG:rno:362152
UCSC:RGD:727807 InParanoid:Q6URK4 NextBio:678824
ArrayExpress:Q6URK4 Genevestigator:Q6URK4 GO:GO:0035770
GO:GO:0051033 Uniprot:Q6URK4
Length = 379
Score = 83 (34.3 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 17/52 (32%), Positives = 28/52 (53%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRP 53
+D +K RG GF+T++ + V+ M H++ G V RA +ED +P
Sbjct: 68 RDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKP 119
Score = 74 (31.1 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 15/37 (40%), Positives = 24/37 (64%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKVRQ 138
KKIFVG + ++ +LR YF ++G+I + V + RQ
Sbjct: 126 KKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQ 162
>UNIPROTKB|E1BEG2 [details] [associations]
symbol:HNRNPA3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 OMA:QGHDPKE EMBL:DAAA02004160
IPI:IPI00690667 Ensembl:ENSBTAT00000028757 Uniprot:E1BEG2
Length = 380
Score = 83 (34.3 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 17/52 (32%), Positives = 28/52 (53%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRP 53
+D +K RG GF+T++ + V+ M H++ G V RA +ED +P
Sbjct: 68 RDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKP 119
Score = 74 (31.1 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 15/37 (40%), Positives = 24/37 (64%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKVRQ 138
KKIFVG + ++ +LR YF ++G+I + V + RQ
Sbjct: 126 KKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQ 162
>TAIR|locus:2037633 [details] [associations]
symbol:RBP1 "RNA-binding protein 1" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0003727 "single-stranded RNA binding"
evidence=IDA] [GO:0008283 "cell proliferation" evidence=TAS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002684 GO:GO:0000166 GO:GO:0008283
GO:GO:0003727 Gene3D:3.30.70.330 EMBL:AB077822 KO:K14411
EMBL:AC082643 HSSP:Q61474 EMBL:AY054536 EMBL:AY064643
IPI:IPI00548887 PIR:F96618 RefSeq:NP_176143.1 UniGene:At.17236
ProteinModelPortal:Q9C652 SMR:Q9C652 IntAct:Q9C652 STRING:Q9C652
PRIDE:Q9C652 EnsemblPlants:AT1G58470.1 GeneID:842216
KEGG:ath:AT1G58470 TAIR:At1g58470 InParanoid:Q9C652 OMA:VTYDSED
PhylomeDB:Q9C652 ProtClustDB:CLSN2914680 Genevestigator:Q9C652
Uniprot:Q9C652
Length = 360
Score = 89 (36.4 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 18/32 (56%), Positives = 20/32 (62%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYV 133
KKIFVG L T E+ + YF RFGR DV V
Sbjct: 120 KKIFVGGLSSNTTEEEFKSYFERFGRTTDVVV 151
Score = 64 (27.6 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 16/47 (34%), Positives = 25/47 (53%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKED 49
K++ + RG GF+ FA+ V + DTH + G V V +A K +
Sbjct: 39 KEKVTGKPRGFGFVRFANDCDVVKALRDTHFILGKPVDVRKAIRKHE 85
>FB|FBgn0025790 [details] [associations]
symbol:TBPH "TAR DNA-binding protein-43 homolog" species:7227
"Drosophila melanogaster" [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0048812 "neuron projection
morphogenesis" evidence=IMP] [GO:0008344 "adult locomotory
behavior" evidence=IMP] [GO:0007528 "neuromuscular junction
development" evidence=IMP] [GO:0007417 "central nervous system
development" evidence=IMP] [GO:0045886 "negative regulation of
synaptic growth at neuromuscular junction" evidence=IMP]
[GO:0005634 "nucleus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0007528 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0008344 GO:GO:0045886 EMBL:AB010261
HSSP:Q61474 eggNOG:NOG145464 EMBL:AB019705 EMBL:AB019706 SMR:O97468
IntAct:O97468 STRING:O97468 UCSC:CG10327-RC FlyBase:FBgn0025790
InParanoid:O97468 OrthoDB:EOG4QNKC2 Uniprot:O97468
Length = 531
Score = 112 (44.5 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 26/75 (34%), Positives = 43/75 (57%)
Query: 62 YGAYNAYISAAT-RYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRR 120
+G+Y+A + T R+ G P S +G Q + K+FVGR ++ ++DLR
Sbjct: 155 FGSYDAQMRVLTNRHLIDGRWCEVKVPNS---KGMGHQ-VPCKVFVGRCTEDINSDDLRE 210
Query: 121 YFSRFGRILDVYVPK 135
YFS+FG + DV++P+
Sbjct: 211 YFSKFGEVTDVFIPR 225
>UNIPROTKB|F1NIB2 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
GeneTree:ENSGT00700000104347 OMA:FILFKDP EMBL:AADN02028501
EMBL:AADN02028502 EMBL:AADN02028503 IPI:IPI00574172
Ensembl:ENSGALT00000023234 ArrayExpress:F1NIB2 Uniprot:F1NIB2
Length = 263
Score = 86 (35.3 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 18/33 (54%), Positives = 21/33 (63%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP 134
KKIFVG L EAT E +R YF FG I + +P
Sbjct: 84 KKIFVGGLNPEATEEKIREYFGEFGEIEAIELP 116
Score = 64 (27.6 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 19/59 (32%), Positives = 27/59 (45%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
D + RG GFI F SVE ++ H L G + +A + D PV ++ GG
Sbjct: 34 DPNTGRSRGFGFILFKEPGSVEKVLEQKEHRLDGRLIDPKKAMAMKKD--PVKKIFVGG 90
>UNIPROTKB|F1Q2T4 [details] [associations]
symbol:F1Q2T4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03026834
Ensembl:ENSCAFT00000030325 Uniprot:F1Q2T4
Length = 290
Score = 84 (34.6 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 18/51 (35%), Positives = 28/51 (54%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRP 53
+D +K RG GF+T+A+ V+ +H++ G V RA +ED RP
Sbjct: 47 RDPNTKHSRGFGFVTYATVKEVD--AARSHKVDGRVVEPKRAVSREDSQRP 95
Score = 68 (29.0 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 16/39 (41%), Positives = 23/39 (58%)
Query: 95 ESSQRIG-----KKIFVGRLPQEATAEDLRRYFSRFGRI 128
E SQR G +KIFVG + ++ LR YF ++G+I
Sbjct: 90 EDSQRPGAHLTVRKIFVGGIKEDTEEHHLRDYFKQYGKI 128
>UNIPROTKB|D4A6A2 [details] [associations]
symbol:D4A6A2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00949070
ProteinModelPortal:D4A6A2 Ensembl:ENSRNOT00000035567 Uniprot:D4A6A2
Length = 232
Score = 78 (32.5 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 18/52 (34%), Positives = 28/52 (53%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRP 53
+D +K RG GF+T+ S + V+ M H++ G V RA +ED +P
Sbjct: 46 RDPQTKRSRGFGFVTY-SCEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKP 96
Score = 73 (30.8 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 15/37 (40%), Positives = 24/37 (64%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKVRQ 138
KKIFVG + ++ +LR YF ++G+I + V + RQ
Sbjct: 103 KKIFVGGIKEDTGEYNLRDYFEKYGKIETIEVMEDRQ 139
>FB|FBgn0004237 [details] [associations]
symbol:Hrb87F "Heterogeneous nuclear ribonucleoprotein at
87F" species:7227 "Drosophila melanogaster" [GO:0030529
"ribonucleoprotein complex" evidence=ISS;NAS;IDA;IPI] [GO:0005703
"polytene chromosome puff" evidence=IDA] [GO:0005654 "nucleoplasm"
evidence=IDA] [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0000785 "chromatin" evidence=IDA] [GO:0005634 "nucleus"
evidence=IC;IDA] [GO:0035062 "omega speckle" evidence=IDA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IMP] [GO:0001745 "compound eye morphogenesis"
evidence=IGI] [GO:0043565 "sequence-specific DNA binding"
evidence=IDA] [GO:0007067 "mitosis" evidence=IMP] [GO:0022008
"neurogenesis" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014297
GO:GO:0005737 GO:GO:0007067 GO:GO:0022008 GO:GO:0000166
GO:GO:0043565 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000785
GO:GO:0030529 eggNOG:COG0724 GO:GO:0005703 GO:GO:0000381
GeneTree:ENSGT00700000104255 KO:K12741 EMBL:X54803 EMBL:X58183
EMBL:X58184 EMBL:X59691 EMBL:X62636 EMBL:BT012315 PIR:A41732
PIR:S22315 RefSeq:NP_001163602.1 RefSeq:NP_476806.1
RefSeq:NP_476807.1 UniGene:Dm.1711 ProteinModelPortal:P48810
SMR:P48810 IntAct:P48810 MINT:MINT-296059 STRING:P48810
PaxDb:P48810 EnsemblMetazoa:FBtr0082851 EnsemblMetazoa:FBtr0300590
EnsemblMetazoa:FBtr0310621 GeneID:48535 KEGG:dme:Dmel_CG12749
CTD:48535 FlyBase:FBgn0004237 InParanoid:P48810 OMA:MENRDAK
OrthoDB:EOG46WWRF PhylomeDB:P48810 ChiTaRS:Hrb87F GenomeRNAi:48535
NextBio:839451 Bgee:P48810 GermOnline:CG12749 GO:GO:0035062
Uniprot:P48810
Length = 385
Score = 84 (34.6 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 17/48 (35%), Positives = 28/48 (58%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKED 49
KD +K RG GFIT++ + ++N H++ G TV RA P+++
Sbjct: 57 KDPKTKRSRGFGFITYSQSYMIDNAQNARPHKIDGRTVEPKRAVPRQE 104
Score = 71 (30.1 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYV 133
KK+FVG L + E LR YF FG+I+ V +
Sbjct: 115 KKLFVGGLRDDHDEECLREYFKDFGQIVSVNI 146
>UNIPROTKB|F1PGQ0 [details] [associations]
symbol:F1PGQ0 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03010176
Ensembl:ENSCAFT00000005615 OMA:RRYQRIT Uniprot:F1PGQ0
Length = 318
Score = 82 (33.9 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 17/51 (33%), Positives = 27/51 (52%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRP 53
+D +K RG+GF+ +A+ + V+ M + G V RA +ED RP
Sbjct: 47 RDPNTKRSRGVGFLMYATVEEVDAAMNARPHVDGRVVEPKRAVSREDSQRP 97
Score = 71 (30.1 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 17/39 (43%), Positives = 23/39 (58%)
Query: 95 ESSQRIG-----KKIFVGRLPQEATAEDLRRYFSRFGRI 128
E SQR G KKIFVG + ++ LR YF ++G+I
Sbjct: 92 EDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKI 130
>TAIR|locus:2007903 [details] [associations]
symbol:AT1G17640 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K12741 OMA:GHQTGYK IPI:IPI00519530 RefSeq:NP_173208.1
UniGene:At.51654 ProteinModelPortal:F4I906 SMR:F4I906 PRIDE:F4I906
EnsemblPlants:AT1G17640.1 GeneID:838341 KEGG:ath:AT1G17640
Uniprot:F4I906
Length = 369
Score = 108 (43.1 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 36/109 (33%), Positives = 47/109 (43%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVD--THELGGSTVVVDRATPK----EDDFRPVGRM 57
D + RG GF+TF + DSV+ L D HELG V + RA PK ++ FR G
Sbjct: 191 DHHTGRSRGFGFVTFQTEDSVDRLFSDGKVHELGDKQVEIKRAEPKRTGRDNSFRSYG-- 248
Query: 58 SHGGYGAYNAYISAATR-------YAALGAPTLYD-----HPGSFYGRG 94
+ G Y ++Y A Y G Y +P FYG G
Sbjct: 249 ASGKYDQEDSYSGKANEDYSMYSGYGGYGGYGAYAGNSMVNPAGFYGYG 297
>UNIPROTKB|Q9XSY6 [details] [associations]
symbol:Q9XSY6 "HnRNP A/B related protein" species:9685
"Felis catus" [GO:0001837 "epithelial to mesenchymal transition"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0043565 "sequence-specific DNA binding"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0045893 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0001837 HOVERGEN:HBG002295 HSSP:Q14103 InterPro:IPR012956
Pfam:PF08143 EMBL:AF153444 ProteinModelPortal:Q9XSY6 Uniprot:Q9XSY6
Length = 279
Score = 86 (35.3 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 18/33 (54%), Positives = 21/33 (63%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP 134
KKIFVG L EAT E +R YF FG I + +P
Sbjct: 148 KKIFVGGLNPEATEEKIREYFGEFGEIEAIELP 180
Score = 63 (27.2 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 18/52 (34%), Positives = 26/52 (50%)
Query: 11 RGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+G GFI F A SVE ++ H L G + +A + D PV ++ GG
Sbjct: 105 KGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKAMAMKKD--PVKKIFVGG 154
>ZFIN|ZDB-GENE-050320-86 [details] [associations]
symbol:msi1 "musashi homolog 1 (Drosophila)"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0007417 "central
nervous system development" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-050320-86 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0007417 GO:GO:0003676 EMBL:AB698464 Uniprot:J4C3V8
Length = 349
Score = 81 (33.6 bits), Expect = 2.1e-05, Sum P(2) = 2.1e-05
Identities = 15/29 (51%), Positives = 21/29 (72%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILD 130
KKIFVG L T ED+++YF +FG++ D
Sbjct: 109 KKIFVGGLSVNTTIEDVKQYFDQFGKVDD 137
Score = 73 (30.8 bits), Expect = 2.1e-05, Sum P(2) = 2.1e-05
Identities = 16/46 (34%), Positives = 24/46 (52%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPK 47
+D +K RG GF+TF V+ ++ T HEL T+ A P+
Sbjct: 53 RDPVTKRSRGFGFVTFVDQAGVDKVLAQTRHELDSKTIDPKVAFPR 98
>FB|FBgn0004838 [details] [associations]
symbol:Hrb27C "Heterogeneous nuclear ribonucleoprotein at
27C" species:7227 "Drosophila melanogaster" [GO:0030529
"ribonucleoprotein complex" evidence=ISS;NAS;IDA;IPI] [GO:0005730
"nucleolus" evidence=IDA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0048027 "mRNA 5'-UTR binding" evidence=NAS;TAS] [GO:0007319
"negative regulation of oskar mRNA translation" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IDA;TAS] [GO:0007317
"regulation of pole plasm oskar mRNA localization" evidence=IMP]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0045451 "pole
plasm oskar mRNA localization" evidence=IMP] [GO:0048024
"regulation of mRNA splicing, via spliceosome" evidence=IMP]
[GO:0007298 "border follicle cell migration" evidence=IMP]
[GO:0045727 "positive regulation of translation" evidence=IDA]
[GO:0043234 "protein complex" evidence=IPI] [GO:0005515 "protein
binding" evidence=IPI] [GO:0007411 "axon guidance" evidence=IMP]
[GO:0046331 "lateral inhibition" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0007411 GO:GO:0043234 GO:GO:0005654
EMBL:AE014134 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0007298
GO:GO:0048027 GO:GO:0003730 GO:GO:0003697 GO:GO:0030529
GO:GO:0046331 GO:GO:0045727 GO:GO:0048024 GO:GO:0007319
eggNOG:COG0724 GO:GO:0045451 KO:K14411 GeneTree:ENSGT00700000104255
EMBL:X62639 EMBL:DQ062784 EMBL:AY069699 EMBL:AY128430 EMBL:S51720
PIR:D41732 RefSeq:NP_001162897.1 RefSeq:NP_001162898.1
RefSeq:NP_001245917.1 RefSeq:NP_001245918.1 RefSeq:NP_001245919.1
RefSeq:NP_476869.1 RefSeq:NP_723228.1 RefSeq:NP_723229.1
UniGene:Dm.1997 ProteinModelPortal:P48809 SMR:P48809 IntAct:P48809
MINT:MINT-939547 STRING:P48809 PaxDb:P48809
EnsemblMetazoa:FBtr0079346 EnsemblMetazoa:FBtr0079347
EnsemblMetazoa:FBtr0079348 EnsemblMetazoa:FBtr0301403
EnsemblMetazoa:FBtr0301404 EnsemblMetazoa:FBtr0307030
EnsemblMetazoa:FBtr0307031 EnsemblMetazoa:FBtr0307032 GeneID:33968
KEGG:dme:Dmel_CG10377 CTD:33968 FlyBase:FBgn0004838
InParanoid:P48809 OMA:GGYDMYN OrthoDB:EOG4CJSZQ PhylomeDB:P48809
ChiTaRS:Hrb27C GenomeRNAi:33968 NextBio:786189 Bgee:P48809
GermOnline:CG10377 Uniprot:P48809
Length = 421
Score = 87 (35.7 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 14/33 (42%), Positives = 23/33 (69%)
Query: 101 GKKIFVGRLPQEATAEDLRRYFSRFGRILDVYV 133
G K+F+G LP T DLR +F+R+G++ +V +
Sbjct: 95 GYKVFLGGLPSNVTETDLRTFFNRYGKVTEVVI 127
Score = 66 (28.3 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 21/68 (30%), Positives = 34/68 (50%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVD-THELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
K+ S RG GF+TFA +V +++ + H L G T+ D PK + R + + GG
Sbjct: 40 KNNESGRSRGFGFVTFADPTNVNHVLQNGPHTLDGRTI--D---PKPCNPRTLQKPKKGG 94
Query: 62 YGAYNAYI 69
Y ++
Sbjct: 95 --GYKVFL 100
>UNIPROTKB|F1LUM4 [details] [associations]
symbol:F1LUM4 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00389838
ProteinModelPortal:F1LUM4 Ensembl:ENSRNOT00000031839 Uniprot:F1LUM4
Length = 209
Score = 75 (31.5 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 16/51 (31%), Positives = 27/51 (52%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVD-THELGGSTVVVDRATPKEDDFRP 53
D ++ RG GF+T++ + V+ M H++ G V RA +ED +P
Sbjct: 33 DPQTEHSRGFGFVTYSCVEEVDAAMCAWPHKVDGRVVEPKRAVSREDSVKP 83
Score = 74 (31.1 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 15/37 (40%), Positives = 24/37 (64%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKVRQ 138
KKIFVG + ++ +LR YF ++G+I + V + RQ
Sbjct: 90 KKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQ 126
>UNIPROTKB|F1SCL3 [details] [associations]
symbol:LOC100522980 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:CU986279
RefSeq:XP_003123190.1 Ensembl:ENSSSCT00000014811 GeneID:100522980
KEGG:ssc:100522980 Uniprot:F1SCL3
Length = 354
Score = 82 (33.9 bits), Expect = 2.4e-05, Sum P(2) = 2.4e-05
Identities = 17/52 (32%), Positives = 26/52 (50%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRP 53
+D S+ RG GF+ F+S V+ M H + G V R P+E+ +P
Sbjct: 54 RDPSSQRSRGFGFVIFSSVAEVDAAMAARPHSIDGRVVASKRVVPREESGKP 105
Score = 71 (30.1 bits), Expect = 2.4e-05, Sum P(2) = 2.4e-05
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRI 128
KK+FVG + ++ T LR YF R+G I
Sbjct: 112 KKLFVGGIKEDTTERHLRDYFERYGTI 138
>UNIPROTKB|F1SCM6 [details] [associations]
symbol:LOC100522063 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:CU986279
RefSeq:XP_003123185.1 Ensembl:ENSSSCT00000014807 GeneID:100522063
KEGG:ssc:100522063 Uniprot:F1SCM6
Length = 354
Score = 82 (33.9 bits), Expect = 2.4e-05, Sum P(2) = 2.4e-05
Identities = 17/52 (32%), Positives = 26/52 (50%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRP 53
+D S+ RG GF+ F+S V+ M H + G V R P+E+ +P
Sbjct: 54 RDPSSQRSRGFGFVIFSSVAEVDAAMAARPHSIDGRVVASKRVVPREESGKP 105
Score = 71 (30.1 bits), Expect = 2.4e-05, Sum P(2) = 2.4e-05
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRI 128
KK+FVG + ++ T LR YF R+G I
Sbjct: 112 KKLFVGGIKEDTTERHLRDYFERYGTI 138
>TAIR|locus:2050992 [details] [associations]
symbol:AT2G33410 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002685 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC002332 HOGENOM:HOG000234441 KO:K14411 HSSP:Q61474
ProtClustDB:CLSN2913105 OMA:GNDSSYG EMBL:AY136298 EMBL:BT000416
IPI:IPI00531202 PIR:B84745 RefSeq:NP_180899.1 UniGene:At.22217
ProteinModelPortal:O22791 SMR:O22791 IntAct:O22791 STRING:O22791
PRIDE:O22791 ProMEX:O22791 EnsemblPlants:AT2G33410.1 GeneID:817905
KEGG:ath:AT2G33410 TAIR:At2g33410 InParanoid:O22791
PhylomeDB:O22791 ArrayExpress:O22791 Genevestigator:O22791
Uniprot:O22791
Length = 404
Score = 107 (42.7 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 29/65 (44%), Positives = 38/65 (58%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
DQ ++ RG GF++F S DSV+ ++ T H+L G V V RA PK D P G S GG
Sbjct: 144 DQTTQRPRGFGFVSFDSEDSVDLVLHKTFHDLNGKQVEVKRALPK--DANP-GIASGGGR 200
Query: 63 GAYNA 67
G+ A
Sbjct: 201 GSGGA 205
Score = 78 (32.5 bits), Expect = 2.6e-05, Sum P(2) = 2.6e-05
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYV 133
KKIFVG LP T+++ R YF +G + D +
Sbjct: 110 KKIFVGGLPPALTSDEFRAYFETYGPVSDAVI 141
Score = 78 (32.5 bits), Expect = 2.6e-05, Sum P(2) = 2.6e-05
Identities = 19/70 (27%), Positives = 34/70 (48%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
+++ + RG GF+ F+ ++ ++ D H + V V RA +E+ P GR G +
Sbjct: 39 REKATGRPRGFGFVAFSDPAVIDRVLQDKHHIDNRDVDVKRAMSREEQ-SPAGRS--GTF 95
Query: 63 GAYNAYISAA 72
A + S A
Sbjct: 96 NASRNFDSGA 105
>FB|FBgn0001215 [details] [associations]
symbol:Hrb98DE "Heterogeneous nuclear ribonucleoprotein at
98DE" species:7227 "Drosophila melanogaster" [GO:0030529
"ribonucleoprotein complex" evidence=ISS;NAS;IDA;IPI] [GO:0003729
"mRNA binding" evidence=ISS;NAS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001745 "compound eye morphogenesis"
evidence=IGI] [GO:0043565 "sequence-specific DNA binding"
evidence=IDA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IMP] [GO:0005703 "polytene chromosome
puff" evidence=IDA] [GO:0033119 "negative regulation of RNA
splicing" evidence=IMP] [GO:0005634 "nucleus" evidence=IDA]
[GO:0045727 "positive regulation of translation" evidence=IMP]
[GO:0048477 "oogenesis" evidence=IMP] [GO:0036099 "female germ-line
stem cell maintenance" evidence=IMP] [GO:0048027 "mRNA 5'-UTR
binding" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014297
GO:GO:0005634 GO:GO:0000166 GO:GO:0043565 Gene3D:3.30.70.330
GO:GO:0048477 GO:GO:0048027 GO:GO:0030529 GO:GO:0033119
GO:GO:0045727 eggNOG:COG0724 GO:GO:0005703 GO:GO:0000381
GeneTree:ENSGT00700000104255 GO:GO:0036099 KO:K12741
OrthoDB:EOG46WWRF EMBL:M15766 EMBL:M25545 EMBL:M28871 EMBL:M28872
EMBL:M33955 EMBL:M31560 EMBL:M28870 EMBL:AY061448 PIR:A26459
RefSeq:NP_524543.1 RefSeq:NP_733249.1 RefSeq:NP_733250.1
RefSeq:NP_733251.1 RefSeq:NP_733252.1 RefSeq:NP_733253.1
UniGene:Dm.7147 ProteinModelPortal:P07909 SMR:P07909 DIP:DIP-19217N
IntAct:P07909 MINT:MINT-764040 STRING:P07909 PaxDb:P07909
PRIDE:P07909 EnsemblMetazoa:FBtr0085300 EnsemblMetazoa:FBtr0085301
GeneID:43385 KEGG:dme:Dmel_CG9983 CTD:43385 FlyBase:FBgn0001215
InParanoid:P07909 OMA:INIVIDK PhylomeDB:P07909 ChiTaRS:Hrb98DE
GenomeRNAi:43385 NextBio:833644 Bgee:P07909 GermOnline:CG9983
Uniprot:P07909
Length = 365
Score = 79 (32.9 bits), Expect = 2.8e-05, Sum P(2) = 2.8e-05
Identities = 16/48 (33%), Positives = 26/48 (54%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKED 49
KD +K RG GFIT++ + ++ H++ G V RA P++D
Sbjct: 64 KDPRTKRSRGFGFITYSHSSMIDEAQKSRPHKIDGRVVEPKRAVPRQD 111
Score = 75 (31.5 bits), Expect = 2.8e-05, Sum P(2) = 2.8e-05
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYV 133
KK+FVG L + + +R YF FG I+D+ +
Sbjct: 122 KKLFVGALKDDHDEQSIRDYFQHFGNIVDINI 153
>UNIPROTKB|F1M460 [details] [associations]
symbol:F1M460 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00569538
ProteinModelPortal:F1M460 Ensembl:ENSRNOT00000043465
ArrayExpress:F1M460 Uniprot:F1M460
Length = 224
Score = 79 (32.9 bits), Expect = 3.1e-05, Sum P(2) = 3.1e-05
Identities = 16/52 (30%), Positives = 28/52 (53%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRP 53
+D +K RG GF+T++ + V+ + H++ G V RA +ED +P
Sbjct: 41 RDPQTKRSRGFGFVTYSCVEEVDAAVCARPHKVDGRVVEPKRAVSREDSVKP 92
Score = 68 (29.0 bits), Expect = 3.1e-05, Sum P(2) = 3.1e-05
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYV 133
KKIFVG + ++ +LR YF ++G+I + V
Sbjct: 99 KKIFVGGIKEDTEEYNLRDYFEKYGKIETIEV 130
>FB|FBgn0011666 [details] [associations]
symbol:msi "musashi" species:7227 "Drosophila melanogaster"
[GO:0005634 "nucleus" evidence=IDA] [GO:0022416 "chaeta
development" evidence=IMP] [GO:0003723 "RNA binding" evidence=ISM]
[GO:0003729 "mRNA binding" evidence=ISS;NAS;TAS] [GO:0006397 "mRNA
processing" evidence=ISS] [GO:0017148 "negative regulation of
translation" evidence=IMP;TAS] [GO:0006417 "regulation of
translation" evidence=TAS] [GO:0045182 "translation regulator
activity" evidence=TAS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001709 "cell fate determination" evidence=TAS]
[GO:0000900 "translation repressor activity, nucleic acid binding"
evidence=TAS] [GO:0019827 "stem cell maintenance" evidence=IMP]
[GO:0042078 "germ-line stem cell division" evidence=IMP]
[GO:0071456 "cellular response to hypoxia" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AE014297 GO:GO:0005634 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0071456 GO:GO:0022416
GO:GO:0001709 GO:GO:0019827 GO:GO:0000900 GO:GO:0042078 KO:K14411
GeneTree:ENSGT00700000104255 HSSP:Q61474 ChiTaRS:msi
FlyBase:FBgn0011666 EMBL:BT133366 RefSeq:NP_001247303.1
RefSeq:NP_733108.2 UniGene:Dm.1334 SMR:Q8IMS8 MINT:MINT-296706
STRING:Q8IMS8 EnsemblMetazoa:FBtr0084881 EnsemblMetazoa:FBtr0305218
EnsemblMetazoa:FBtr0333664 GeneID:43087 KEGG:dme:Dmel_CG5099
UCSC:CG5099-RB CTD:43087 InParanoid:Q8IMS8 OMA:PIKAFAC
GenomeRNAi:43087 NextBio:832139 Uniprot:Q8IMS8
Length = 634
Score = 80 (33.2 bits), Expect = 3.2e-05, Sum P(2) = 3.2e-05
Identities = 14/27 (51%), Positives = 22/27 (81%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRI 128
KKIFVG + Q+ +AE+++ YFS+FG +
Sbjct: 291 KKIFVGGVSQDTSAEEVKAYFSQFGPV 317
Score = 79 (32.9 bits), Expect = 3.2e-05, Sum P(2) = 3.2e-05
Identities = 19/46 (41%), Positives = 25/46 (54%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPK 47
KD ++ RG GFITF +VE ++ V H L G + ATPK
Sbjct: 236 KDPVTQRSRGFGFITFQEPCTVEKVLKVPIHTLDGKKIDPKHATPK 281
>UNIPROTKB|F1LXW0 [details] [associations]
symbol:F1LXW0 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 IPI:IPI00212167 Ensembl:ENSRNOT00000008039
Uniprot:F1LXW0
Length = 293
Score = 93 (37.8 bits), Expect = 3.2e-05, Sum P(2) = 3.2e-05
Identities = 19/52 (36%), Positives = 30/52 (57%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRP 53
+D +K RG GF+T+A+ + V+ +M H++ G V RA +ED RP
Sbjct: 45 RDPNTKRSRGFGFVTYATVEEVDAVMNARPHKVDGRVVEPKRAVSREDSQRP 96
Score = 49 (22.3 bits), Expect = 3.2e-05, Sum P(2) = 3.2e-05
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 95 ESSQRIGK----KIFVGRLPQEATAEDLRRYFSRFGR 127
E SQR G KIFVG + ++ LR Y + G+
Sbjct: 91 EDSQRPGAHLAVKIFVGGIKEDTEEHHLRDYSEQNGK 127
Score = 38 (18.4 bits), Expect = 0.00042, Sum P(2) = 0.00042
Identities = 12/50 (24%), Positives = 25/50 (50%)
Query: 59 HGGYGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGR 108
+GG G+Y++ IS+ + G Y+ G++ + + ++ F GR
Sbjct: 209 YGGSGSYDSNISSDNG-SNFGGVRSYNDFGNYNNQSSNFGQMKGGHFGGR 257
>ZFIN|ZDB-GENE-040426-2516 [details] [associations]
symbol:zgc:77052 "zgc:77052" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-2516 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 InterPro:IPR012956
Pfam:PF08143 OrthoDB:EOG42BX9K EMBL:FP085391 EMBL:BC066681
IPI:IPI00497482 RefSeq:NP_998467.1 UniGene:Dr.75633 SMR:Q6NYA1
STRING:Q6NYA1 Ensembl:ENSDART00000098408 GeneID:406594
KEGG:dre:406594 OMA:EIKTYFS NextBio:20818146 Uniprot:Q6NYA1
Length = 309
Score = 82 (33.9 bits), Expect = 3.2e-05, Sum P(2) = 3.2e-05
Identities = 17/33 (51%), Positives = 20/33 (60%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP 134
KKIFVG L E T E +R YF FG I + +P
Sbjct: 129 KKIFVGGLNPETTEEKIREYFGSFGEIETIELP 161
Score = 68 (29.0 bits), Expect = 3.2e-05, Sum P(2) = 3.2e-05
Identities = 19/59 (32%), Positives = 29/59 (49%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
D + RG GFI F +DSV+ ++ H L G + RA + + PV ++ GG
Sbjct: 79 DSNTGRSRGFGFILFKESDSVDRVLQQKEHRLDGRQIDPKRAMAIKKE--PVKKIFVGG 135
>CGD|CAL0003460 [details] [associations]
symbol:orf19.5989 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005849 "mRNA
cleavage factor complex" evidence=IEA] [GO:0006379 "mRNA cleavage"
evidence=IEA] [GO:0006378 "mRNA polyadenylation" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
CGD:CAL0003460 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AACQ01000003 EMBL:AACQ01000004 eggNOG:COG0724 KO:K14411
RefSeq:XP_723052.1 RefSeq:XP_723199.1 ProteinModelPortal:Q5ANB5
SMR:Q5ANB5 STRING:Q5ANB5 GeneID:3635162 GeneID:3635323
KEGG:cal:CaO19.13410 KEGG:cal:CaO19.5989 Uniprot:Q5ANB5
Length = 475
Score = 107 (42.7 bits), Expect = 3.3e-05, P = 3.3e-05
Identities = 25/59 (42%), Positives = 33/59 (55%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
KD + RG GF+TF A SV+ L+ D H L G + RA KED + VG++ GG
Sbjct: 195 KDSATGRSRGFGFLTFEDAKSVDALLKDRHVLDGKLIDPKRAISKEDQEK-VGKIFVGG 252
>UNIPROTKB|D4A1X0 [details] [associations]
symbol:D4A1X0 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0097157
GO:GO:0048025 OrthoDB:EOG4HQDKF IPI:IPI00778370
ProteinModelPortal:D4A1X0 Ensembl:ENSRNOT00000061082 Uniprot:D4A1X0
Length = 312
Score = 84 (34.6 bits), Expect = 3.6e-05, Sum P(2) = 3.6e-05
Identities = 19/52 (36%), Positives = 27/52 (51%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRP 53
+D SK RG GF+TF+S V+ M H + G V RA +E+ +P
Sbjct: 42 RDPASKRSRGFGFVTFSSMAEVDVAMAARPHSIDGRVVEPKRAVAREESGKP 93
Score = 65 (27.9 bits), Expect = 3.6e-05, Sum P(2) = 3.6e-05
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKVRQ 138
KK+FVG + ++ LR YF +G+I + + RQ
Sbjct: 100 KKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQ 136
>UNIPROTKB|I3LPG0 [details] [associations]
symbol:MSI1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0005844
"polysome" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005844 GeneTree:ENSGT00700000104255 OMA:GLPGSHP
EMBL:FP690339 Ensembl:ENSSSCT00000027694 Uniprot:I3LPG0
Length = 332
Score = 82 (33.9 bits), Expect = 4.0e-05, Sum P(2) = 4.0e-05
Identities = 15/29 (51%), Positives = 21/29 (72%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILD 130
KKIFVG L T ED+++YF +FG++ D
Sbjct: 76 KKIFVGGLSVNTTVEDVKQYFEQFGKVDD 104
Score = 68 (29.0 bits), Expect = 4.0e-05, Sum P(2) = 4.0e-05
Identities = 17/55 (30%), Positives = 27/55 (49%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGR 56
+D +K RG GF+TF V+ ++ + HEL T+ A P+ + V R
Sbjct: 20 RDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVTR 74
>UNIPROTKB|F1MS42 [details] [associations]
symbol:MSI1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0005844
"polysome" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005844 GeneTree:ENSGT00700000104255 OMA:GLPGSHP
EMBL:DAAA02045450 EMBL:DAAA02045451 IPI:IPI00718423
Ensembl:ENSBTAT00000012926 Uniprot:F1MS42
Length = 342
Score = 82 (33.9 bits), Expect = 4.4e-05, Sum P(2) = 4.4e-05
Identities = 15/29 (51%), Positives = 21/29 (72%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILD 130
KKIFVG L T ED+++YF +FG++ D
Sbjct: 89 KKIFVGGLSVNTTVEDVKQYFEQFGKVDD 117
Score = 68 (29.0 bits), Expect = 4.4e-05, Sum P(2) = 4.4e-05
Identities = 17/55 (30%), Positives = 27/55 (49%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGR 56
+D +K RG GF+TF V+ ++ + HEL T+ A P+ + V R
Sbjct: 33 RDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVTR 87
>MGI|MGI:1924384 [details] [associations]
symbol:Hnrnpa0 "heterogeneous nuclear ribonucleoprotein A0"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006954 "inflammatory response" evidence=IDA]
[GO:0017091 "AU-rich element binding" evidence=ISO;IDA] [GO:0019901
"protein kinase binding" evidence=ISO] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0032496 "response to
lipopolysaccharide" evidence=IDA] [GO:0070935 "3'-UTR-mediated mRNA
stabilization" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1924384
GO:GO:0005634 GO:GO:0000166 GO:GO:0032496 GO:GO:0006954
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0030529 eggNOG:COG0724
HSSP:P09651 GO:GO:0070935 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104255 HOGENOM:HOG000234442 CTD:10949
KO:K12894 OrthoDB:EOG4W6NX4 EMBL:AK019388 EMBL:AC165251
IPI:IPI00109813 RefSeq:NP_084148.1 UniGene:Mm.490274
ProteinModelPortal:Q9CX86 SMR:Q9CX86 STRING:Q9CX86
PhosphoSite:Q9CX86 PaxDb:Q9CX86 PRIDE:Q9CX86
Ensembl:ENSMUST00000007980 GeneID:77134 KEGG:mmu:77134
UCSC:uc007qtf.2 InParanoid:Q9CX86 OMA:EDNQHAL ChiTaRS:HNRNPA0
NextBio:346544 Bgee:Q9CX86 Genevestigator:Q9CX86 Uniprot:Q9CX86
Length = 305
Score = 88 (36.0 bits), Expect = 4.7e-05, Sum P(2) = 4.7e-05
Identities = 24/63 (38%), Positives = 32/63 (50%)
Query: 4 DQGSKAHRGIGFITFASADSVENL-MVDTHELGGSTVVVDRATPKEDDFRPVG--RMSHG 60
D+ S RG GF+ F S D+ + +V H + G V V +A PKED G R + G
Sbjct: 132 DKQSGKKRGFGFVYFQSHDAADKAAVVKFHPIQGHRVEVKKAVPKEDIHAGGGGARAARG 191
Query: 61 GYG 63
G G
Sbjct: 192 GRG 194
Score = 79 (32.9 bits), Expect = 0.00056, Sum P(2) = 0.00056
Identities = 16/48 (33%), Positives = 28/48 (58%)
Query: 7 SKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRP 53
+K R GF+T+++ + + M + H + G+TV + RA +ED RP
Sbjct: 44 TKRSRCFGFVTYSNVEEADAAMAASPHAVDGNTVELKRAVSREDSARP 91
Score = 60 (26.2 bits), Expect = 0.00056, Sum P(2) = 0.00056
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRI 128
KK+FVG L + DL +FS+FG +
Sbjct: 98 KKLFVGGLKGDVAEGDLIEHFSQFGAV 124
Score = 57 (25.1 bits), Expect = 4.7e-05, Sum P(2) = 4.7e-05
Identities = 16/44 (36%), Positives = 19/44 (43%)
Query: 55 GRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQ 98
G S+GGYG Y AY + G D+ F G G SQ
Sbjct: 223 GYNSYGGYGGYGAYGGGGGGGGSYGGS---DYGNGFGGFGSYSQ 263
>UNIPROTKB|O43347 [details] [associations]
symbol:MSI1 "RNA-binding protein Musashi homolog 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005844 "polysome" evidence=IEA] [GO:0008266
"poly(U) RNA binding" evidence=IEA] [GO:0009725 "response to
hormone stimulus" evidence=IEA] [GO:0030855 "epithelial cell
differentiation" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0003723 "RNA binding"
evidence=TAS] [GO:0007399 "nervous system development"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0007399 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0009725 GO:GO:0005844 GO:GO:0030855
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
EMBL:AB012851 EMBL:AC003982 EMBL:AB072590 EMBL:AB072591
EMBL:AB072592 EMBL:AB073212 IPI:IPI00001007 RefSeq:NP_002433.1
UniGene:Hs.158311 ProteinModelPortal:O43347 SMR:O43347
IntAct:O43347 MINT:MINT-1432501 STRING:O43347 PhosphoSite:O43347
PaxDb:O43347 PRIDE:O43347 DNASU:4440 Ensembl:ENST00000257552
GeneID:4440 KEGG:hsa:4440 UCSC:uc001tye.1 CTD:4440
GeneCards:GC12M120779 HGNC:HGNC:7330 HPA:CAB022337 MIM:603328
neXtProt:NX_O43347 PharmGKB:PA31137 InParanoid:O43347 OMA:GLPGSHP
OrthoDB:EOG48GW3J GenomeRNAi:4440 NextBio:17313 ArrayExpress:O43347
Bgee:O43347 CleanEx:HS_MSI1 Genevestigator:O43347
GermOnline:ENSG00000135097 Uniprot:O43347
Length = 362
Score = 82 (33.9 bits), Expect = 5.1e-05, Sum P(2) = 5.1e-05
Identities = 15/29 (51%), Positives = 21/29 (72%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILD 130
KKIFVG L T ED+++YF +FG++ D
Sbjct: 109 KKIFVGGLSVNTTVEDVKQYFEQFGKVDD 137
Score = 68 (29.0 bits), Expect = 5.1e-05, Sum P(2) = 5.1e-05
Identities = 17/55 (30%), Positives = 27/55 (49%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGR 56
+D +K RG GF+TF V+ ++ + HEL T+ A P+ + V R
Sbjct: 53 RDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVTR 107
>RGD|1563684 [details] [associations]
symbol:Hnrnpa0 "heterogeneous nuclear ribonucleoprotein A0"
species:10116 "Rattus norvegicus" [GO:0005634 "nucleus"
evidence=ISO] [GO:0006954 "inflammatory response" evidence=ISO]
[GO:0017091 "AU-rich element binding" evidence=ISO] [GO:0019901
"protein kinase binding" evidence=ISO] [GO:0032496 "response to
lipopolysaccharide" evidence=ISO] [GO:0070935 "3'-UTR-mediated mRNA
stabilization" evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
REFSEQ:XM_003752953 Ncbi:XP_003753001
Length = 226
Score = 88 (36.0 bits), Expect = 5.2e-05, Sum P(2) = 5.2e-05
Identities = 24/63 (38%), Positives = 32/63 (50%)
Query: 4 DQGSKAHRGIGFITFASADSVENL-MVDTHELGGSTVVVDRATPKEDDFRPVG--RMSHG 60
D+ S RG GF+ F S D+ + +V H + G V V +A PKED G R + G
Sbjct: 51 DKQSGKKRGFGFVYFQSHDAADKAAVVKFHPIQGHRVEVKKAVPKEDIHAGGGGARAARG 110
Query: 61 GYG 63
G G
Sbjct: 111 GRG 113
Score = 52 (23.4 bits), Expect = 5.2e-05, Sum P(2) = 5.2e-05
Identities = 16/44 (36%), Positives = 20/44 (45%)
Query: 55 GRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQ 98
G S+GGYG Y AY + G+ D+ F G G SQ
Sbjct: 140 GYNSYGGYGGYGAYGGGGGGGSYGGS----DYGNGFGGFGSYSQ 179
>UNIPROTKB|F1LRH1 [details] [associations]
symbol:Msi1 "RNA-binding protein Musashi homolog 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005844 "polysome" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:628778 GO:GO:0005634 GO:GO:0005737 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0005844 GeneTree:ENSGT00700000104255
IPI:IPI00202463 Ensembl:ENSRNOT00000001532 ArrayExpress:F1LRH1
Uniprot:F1LRH1
Length = 329
Score = 81 (33.6 bits), Expect = 5.8e-05, Sum P(2) = 5.8e-05
Identities = 15/29 (51%), Positives = 20/29 (68%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILD 130
KKIFVG L T ED++ YF +FG++ D
Sbjct: 76 KKIFVGGLSVNTTVEDVKHYFEQFGKVDD 104
Score = 68 (29.0 bits), Expect = 5.8e-05, Sum P(2) = 5.8e-05
Identities = 17/55 (30%), Positives = 27/55 (49%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGR 56
+D +K RG GF+TF V+ ++ + HEL T+ A P+ + V R
Sbjct: 20 RDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVTR 74
>UNIPROTKB|E9PSU5 [details] [associations]
symbol:E9PSU5 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 IPI:IPI00364363 PRIDE:E9PSU5
Ensembl:ENSRNOT00000022054 Uniprot:E9PSU5
Length = 363
Score = 78 (32.5 bits), Expect = 6.3e-05, Sum P(2) = 6.3e-05
Identities = 18/52 (34%), Positives = 28/52 (53%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRP 53
+D +K RG GF+T+ S + V+ M H++ G V RA +ED +P
Sbjct: 53 RDPQTKRSRGFGFVTY-SCEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKP 103
Score = 73 (30.8 bits), Expect = 6.3e-05, Sum P(2) = 6.3e-05
Identities = 15/37 (40%), Positives = 24/37 (64%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKVRQ 138
KKIFVG + ++ +LR YF ++G+I + V + RQ
Sbjct: 110 KKIFVGGIKEDTGEYNLRDYFEKYGKIETIEVMEDRQ 146
>UNIPROTKB|E2RF37 [details] [associations]
symbol:E2RF37 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074566 EMBL:AAEX03000660
Ensembl:ENSCAFT00000003502 OMA:MAMCSAN Uniprot:E2RF37
Length = 330
Score = 79 (32.9 bits), Expect = 6.7e-05, Sum P(2) = 6.7e-05
Identities = 17/52 (32%), Positives = 29/52 (55%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRP 53
+D +K RG F+T+A+ + V+ M V H++ V + +A +ED RP
Sbjct: 13 RDPNTKCSRGFEFLTYATVEDVDAAMNVRPHKVDERVVELKKAVSREDSQRP 64
Score = 70 (29.7 bits), Expect = 6.7e-05, Sum P(2) = 6.7e-05
Identities = 17/39 (43%), Positives = 22/39 (56%)
Query: 95 ESSQRIG-----KKIFVGRLPQEATAEDLRRYFSRFGRI 128
E SQR G KKIFVG + ++ LR YF +G+I
Sbjct: 59 EDSQRPGAHLTVKKIFVGGIKEDTEQHHLRDYFEHYGKI 97
>GENEDB_PFALCIPARUM|PFD0700c [details] [associations]
symbol:PFD0700c "RNA binding protein, putative"
species:5833 "Plasmodium falciparum" [GO:0016070 "RNA metabolic
process" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0016070 EMBL:AL844503
HSSP:Q14103 RefSeq:XP_001351452.1 ProteinModelPortal:Q8I1U3
EnsemblProtists:PFD0700c:mRNA GeneID:812564 KEGG:pfa:PFD0700c
EuPathDB:PlasmoDB:PF3D7_0414500 HOGENOM:HOG000282694
ProtClustDB:CLSZ2431852 Uniprot:Q8I1U3
Length = 358
Score = 84 (34.6 bits), Expect = 6.8e-05, Sum P(2) = 6.8e-05
Identities = 19/49 (38%), Positives = 28/49 (57%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVV---DRATPKE 48
+D +K +RG F+T AS + E ++ DTHEL G V V + TP +
Sbjct: 147 QDHETKRNRGFAFVTMASHINKERILRDTHELNGKRVDVREENNTTPSD 195
Score = 64 (27.6 bits), Expect = 6.8e-05, Sum P(2) = 6.8e-05
Identities = 17/32 (53%), Positives = 19/32 (59%)
Query: 100 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDV 131
I +KIFVG L T + L YFS FG I DV
Sbjct: 196 IQRKIFVGGLNYYWTKDTLESYFSTFGEI-DV 226
>UNIPROTKB|Q8I1U3 [details] [associations]
symbol:PFD0700c "RNA binding protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0016070 "RNA
metabolic process" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0016070
EMBL:AL844503 HSSP:Q14103 RefSeq:XP_001351452.1
ProteinModelPortal:Q8I1U3 EnsemblProtists:PFD0700c:mRNA
GeneID:812564 KEGG:pfa:PFD0700c EuPathDB:PlasmoDB:PF3D7_0414500
HOGENOM:HOG000282694 ProtClustDB:CLSZ2431852 Uniprot:Q8I1U3
Length = 358
Score = 84 (34.6 bits), Expect = 6.8e-05, Sum P(2) = 6.8e-05
Identities = 19/49 (38%), Positives = 28/49 (57%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVV---DRATPKE 48
+D +K +RG F+T AS + E ++ DTHEL G V V + TP +
Sbjct: 147 QDHETKRNRGFAFVTMASHINKERILRDTHELNGKRVDVREENNTTPSD 195
Score = 64 (27.6 bits), Expect = 6.8e-05, Sum P(2) = 6.8e-05
Identities = 17/32 (53%), Positives = 19/32 (59%)
Query: 100 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDV 131
I +KIFVG L T + L YFS FG I DV
Sbjct: 196 IQRKIFVGGLNYYWTKDTLESYFSTFGEI-DV 226
>MGI|MGI:107376 [details] [associations]
symbol:Msi1 "musashi RNA-binding protein 1" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003727 "single-stranded RNA binding"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0005844 "polysome" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009725
"response to hormone stimulus" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:107376 GO:GO:0005634 GO:GO:0005737 GO:GO:0008266
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0009725 GO:GO:0005844
GO:GO:0030855 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K14411
GeneTree:ENSGT00700000104255 CTD:4440 OMA:GLPGSHP OrthoDB:EOG48GW3J
EMBL:D49654 EMBL:AK084019 IPI:IPI00121300 IPI:IPI00462260
RefSeq:NP_032655.1 UniGene:Mm.5077 PDB:1UAW PDB:2MSS PDB:2MST
PDB:2RS2 PDBsum:1UAW PDBsum:2MSS PDBsum:2MST PDBsum:2RS2
ProteinModelPortal:Q61474 SMR:Q61474 STRING:Q61474
PhosphoSite:Q61474 PaxDb:Q61474 PRIDE:Q61474 DNASU:17690
Ensembl:ENSMUST00000150779 GeneID:17690 KEGG:mmu:17690
UCSC:uc008zdu.1 UCSC:uc008zdv.1 InParanoid:Q61474 ChiTaRS:MSI1
EvolutionaryTrace:Q61474 NextBio:292270 Bgee:Q61474 CleanEx:MM_MSI1
Genevestigator:Q61474 GermOnline:ENSMUSG00000054256 Uniprot:Q61474
Length = 362
Score = 81 (33.6 bits), Expect = 7.6e-05, Sum P(2) = 7.6e-05
Identities = 15/29 (51%), Positives = 20/29 (68%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILD 130
KKIFVG L T ED++ YF +FG++ D
Sbjct: 109 KKIFVGGLSVNTTVEDVKHYFEQFGKVDD 137
Score = 68 (29.0 bits), Expect = 7.6e-05, Sum P(2) = 7.6e-05
Identities = 17/55 (30%), Positives = 27/55 (49%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGR 56
+D +K RG GF+TF V+ ++ + HEL T+ A P+ + V R
Sbjct: 53 RDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVTR 107
>RGD|628778 [details] [associations]
symbol:Msi1 "musashi RNA-binding protein 1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=NAS] [GO:0003727 "single-stranded RNA binding"
evidence=ISO] [GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005737
"cytoplasm" evidence=IEA;ISO] [GO:0005844 "polysome"
evidence=IEA;ISO] [GO:0008266 "poly(U) RNA binding"
evidence=IEA;ISO] [GO:0009725 "response to hormone stimulus"
evidence=IMP] [GO:0030855 "epithelial cell differentiation"
evidence=IEP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:628778 GO:GO:0005634
GO:GO:0005737 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0009725 GO:GO:0005844 GO:GO:0030855
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
CTD:4440 OrthoDB:EOG48GW3J EMBL:AY043393 IPI:IPI00202463
RefSeq:NP_683688.1 UniGene:Rn.162146 ProteinModelPortal:Q8K3P4
SMR:Q8K3P4 STRING:Q8K3P4 PhosphoSite:Q8K3P4 GeneID:259272
KEGG:rno:259272 NextBio:624325 ArrayExpress:Q8K3P4
Genevestigator:Q8K3P4 Uniprot:Q8K3P4
Length = 362
Score = 81 (33.6 bits), Expect = 7.6e-05, Sum P(2) = 7.6e-05
Identities = 15/29 (51%), Positives = 20/29 (68%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILD 130
KKIFVG L T ED++ YF +FG++ D
Sbjct: 109 KKIFVGGLSVNTTVEDVKHYFEQFGKVDD 137
Score = 68 (29.0 bits), Expect = 7.6e-05, Sum P(2) = 7.6e-05
Identities = 17/55 (30%), Positives = 27/55 (49%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGR 56
+D +K RG GF+TF V+ ++ + HEL T+ A P+ + V R
Sbjct: 53 RDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVTR 107
>UNIPROTKB|Q8K3P4 [details] [associations]
symbol:Msi1 "RNA-binding protein Musashi homolog 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:628778 GO:GO:0005634
GO:GO:0005737 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0009725 GO:GO:0005844 GO:GO:0030855
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
CTD:4440 OrthoDB:EOG48GW3J EMBL:AY043393 IPI:IPI00202463
RefSeq:NP_683688.1 UniGene:Rn.162146 ProteinModelPortal:Q8K3P4
SMR:Q8K3P4 STRING:Q8K3P4 PhosphoSite:Q8K3P4 GeneID:259272
KEGG:rno:259272 NextBio:624325 ArrayExpress:Q8K3P4
Genevestigator:Q8K3P4 Uniprot:Q8K3P4
Length = 362
Score = 81 (33.6 bits), Expect = 7.6e-05, Sum P(2) = 7.6e-05
Identities = 15/29 (51%), Positives = 20/29 (68%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILD 130
KKIFVG L T ED++ YF +FG++ D
Sbjct: 109 KKIFVGGLSVNTTVEDVKHYFEQFGKVDD 137
Score = 68 (29.0 bits), Expect = 7.6e-05, Sum P(2) = 7.6e-05
Identities = 17/55 (30%), Positives = 27/55 (49%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGR 56
+D +K RG GF+TF V+ ++ + HEL T+ A P+ + V R
Sbjct: 53 RDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVTR 107
>UNIPROTKB|Q99729 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0003723 "RNA binding" evidence=TAS] [GO:0003729 "mRNA binding"
evidence=TAS] [GO:0001837 "epithelial to mesenchymal transition"
evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS;IDA] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0043565 "sequence-specific DNA binding" evidence=ISS]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0045893 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0001837
EMBL:CH471165 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 KO:K13044 InterPro:IPR012956 Pfam:PF08143
EMBL:M65028 EMBL:U76713 EMBL:AK054600 EMBL:AK097657 EMBL:BC001616
EMBL:BC002625 EMBL:BC004561 EMBL:BC009359 EMBL:BC036708
IPI:IPI00106509 IPI:IPI00329355 IPI:IPI00334587 IPI:IPI00334713
PIR:S17563 RefSeq:NP_004490.2 RefSeq:NP_112556.2 UniGene:Hs.591731
UniGene:Hs.715055 PDB:3S7R PDBsum:3S7R ProteinModelPortal:Q99729
SMR:Q99729 IntAct:Q99729 MINT:MINT-4537784 STRING:Q99729
PhosphoSite:Q99729 DMDM:158523286 SWISS-2DPAGE:Q99729 PaxDb:Q99729
PRIDE:Q99729 Ensembl:ENST00000355836 Ensembl:ENST00000358344
Ensembl:ENST00000504898 Ensembl:ENST00000506259 GeneID:3182
KEGG:hsa:3182 UCSC:uc003miu.3 UCSC:uc003miv.3 CTD:3182
GeneCards:GC05P177631 HGNC:HGNC:5034 HPA:HPA046688 MIM:602688
neXtProt:NX_Q99729 PharmGKB:PA162391196 InParanoid:Q99729
OMA:FILFKDP OrthoDB:EOG42BX9K ChiTaRS:HNRNPAB
EvolutionaryTrace:Q99729 GenomeRNAi:3182 NextBio:12628
ArrayExpress:Q99729 Bgee:Q99729 CleanEx:HS_HNRNPAB
Genevestigator:Q99729 GermOnline:ENSG00000197451 Uniprot:Q99729
Length = 332
Score = 79 (32.9 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 17/34 (50%), Positives = 21/34 (61%)
Query: 102 KKIFVGRL-PQEATAEDLRRYFSRFGRILDVYVP 134
KKIFVG L P+ T E +R YF FG I + +P
Sbjct: 153 KKIFVGGLNPESPTEEKIREYFGEFGEIEAIELP 186
Score = 68 (29.0 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 20/59 (33%), Positives = 28/59 (47%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
D + RG GFI F A SVE ++ H L G + +A + D PV ++ GG
Sbjct: 103 DPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKAMAMKKD--PVKKIFVGG 159
>UNIPROTKB|F1M3H8 [details] [associations]
symbol:F1M3H8 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0032496 GO:GO:0006954
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0070935
GeneTree:ENSGT00700000104255 IPI:IPI00777708
ProteinModelPortal:F1M3H8 PRIDE:F1M3H8 Ensembl:ENSRNOT00000061231
Uniprot:F1M3H8
Length = 194
Score = 79 (32.9 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 16/48 (33%), Positives = 28/48 (58%)
Query: 7 SKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRP 53
+K R GF+T+++ + + M + H + G+TV + RA +ED RP
Sbjct: 44 TKRSRCFGFVTYSNVEEADAAMAASPHAVDGNTVELKRAVSREDSARP 91
Score = 60 (26.2 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRI 128
KK+FVG L + DL +FS+FG +
Sbjct: 98 KKLFVGGLKGDVAEGDLIEHFSQFGAV 124
>UNIPROTKB|L7N074 [details] [associations]
symbol:L7N074 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA]
GeneTree:ENSGT00550000074566 EMBL:AAEX03002768
Ensembl:ENSCAFT00000009744 Uniprot:L7N074
Length = 204
Score = 100 (40.3 bits), Expect = 0.00011, P = 0.00011
Identities = 32/109 (29%), Positives = 51/109 (46%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRP-----VGR 56
+D +K RG GF+T+A+ + V+ M H++ G V RA +ED RP V +
Sbjct: 47 RDPDTKCSRGFGFVTYATVEEVDPAMNTRPHKVDGRVVETKRAVSREDSQRPGAHLTVKK 106
Query: 57 MSHGGYGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIF 105
+ + G G YN + + + + G P G+F GR G + F
Sbjct: 107 IFYSG-GTYNDFGNYNNKSSNFG-PL---KGGNFGGRSSGPYGGGGQYF 150
>UNIPROTKB|F1M6M1 [details] [associations]
symbol:F1M6M1 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074566 IPI:IPI00563231
Ensembl:ENSRNOT00000040517 Uniprot:F1M6M1
Length = 253
Score = 77 (32.2 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 18/48 (37%), Positives = 25/48 (52%)
Query: 7 SKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRP 53
+K RG GF+T S + V+ M H++ G V RA +ED RP
Sbjct: 1 TKRSRGFGFVTCTSVEKVDATMNARPHKVDGRVVEPKRAMSREDSQRP 48
Score = 67 (28.6 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRI 128
KKIFVG + ++ LR YF ++G+I
Sbjct: 55 KKIFVGSIKEDTEEHHLRDYFEQYGKI 81
>DICTYBASE|DDB_G0287335 [details] [associations]
symbol:DDB_G0287335 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0287335 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000100 RefSeq:XP_637244.1
ProteinModelPortal:Q54KH9 PRIDE:Q54KH9 EnsemblProtists:DDB0233757
GeneID:8626075 KEGG:ddi:DDB_G0287335 eggNOG:NOG271892
InParanoid:Q54KH9 OMA:MEAENEM ProtClustDB:CLSZ2430003
Uniprot:Q54KH9
Length = 91
Score = 92 (37.4 bits), Expect = 0.00013, P = 0.00013
Identities = 19/47 (40%), Positives = 29/47 (61%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDD 50
D+ +K RG GF+TF +DSV+ M +E+GG +VV A K ++
Sbjct: 37 DKVTKRSRGFGFVTFDQSDSVQKAMEAENEMGGRKLVVSFAQEKTEN 83
>UNIPROTKB|E2RJI3 [details] [associations]
symbol:LOC608729 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K12741 InterPro:IPR021662 Pfam:PF11627
GeneTree:ENSGT00550000074566 EMBL:AAEX03015120 RefSeq:XP_864182.2
ProteinModelPortal:E2RJI3 Ensembl:ENSCAFT00000015269 GeneID:608729
KEGG:cfa:608729 Uniprot:E2RJI3
Length = 321
Score = 88 (36.0 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 19/52 (36%), Positives = 29/52 (55%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRP 53
+D +K RG GF T+A+ + V+ +M H++ G V RA +ED RP
Sbjct: 47 RDPNTKHSRGFGFTTYATREDVDAVMNARPHKMDGRVVEPKRAVSREDSQRP 98
Score = 52 (23.4 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 95 ESSQRIG-----KKIFVGRLPQEATAEDLRRYF 122
E SQR G KKIFVG + ++ L+ YF
Sbjct: 93 EDSQRPGAHLTVKKIFVGGIKEDTEEHHLKDYF 125
>ZFIN|ZDB-GENE-030131-6154 [details] [associations]
symbol:hnrnpa0b "heterogeneous nuclear
ribonucleoprotein A0b" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-6154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442 KO:K12894
EMBL:BC066434 IPI:IPI00507638 RefSeq:NP_999871.1 UniGene:Dr.35374
ProteinModelPortal:Q6NYW8 SMR:Q6NYW8 STRING:Q6NYW8 PRIDE:Q6NYW8
GeneID:334222 KEGG:dre:334222 CTD:334222 InParanoid:Q6NYW8
OrthoDB:EOG4M65KN NextBio:20810313 ArrayExpress:Q6NYW8 Bgee:Q6NYW8
Uniprot:Q6NYW8
Length = 314
Score = 77 (32.2 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 17/37 (45%), Positives = 24/37 (64%)
Query: 92 GRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRI 128
GR E+ ++ KKIFVG L + +DL +FS+FG I
Sbjct: 90 GRPEALAKV-KKIFVGGLKDDIEEKDLTEFFSQFGMI 125
Score = 68 (29.0 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 17/51 (33%), Positives = 28/51 (54%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRP 53
DQ ++ R GF+T+++++ + M H + G V V RA +ED RP
Sbjct: 43 DQLQRS-RCFGFVTYSTSEEADAAMAARPHVVDGKNVEVKRAVAREDAGRP 92
>UNIPROTKB|F1LW17 [details] [associations]
symbol:F1LW17 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 IPI:IPI00567724
Ensembl:ENSRNOT00000046658 ArrayExpress:F1LW17 Uniprot:F1LW17
Length = 249
Score = 74 (31.1 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 16/50 (32%), Positives = 25/50 (50%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRP 53
D G+K RG GF+T++ + V+ + VV RA +ED +P
Sbjct: 60 DCGNKRSRGFGFLTYSCVEEVDAAVCARPHKAAVRVVGKRAVSREDSVKP 109
Score = 69 (29.3 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 13/37 (35%), Positives = 24/37 (64%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKVRQ 138
KK++VG + ++ +LR YF ++G+I + V + RQ
Sbjct: 116 KKLYVGGIKEDTEEYNLRGYFKKYGKIETIEVMEGRQ 152
>UNIPROTKB|F8W646 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1 IPI:IPI01022306
ProteinModelPortal:F8W646 SMR:F8W646 PRIDE:F8W646
Ensembl:ENST00000547708 ArrayExpress:F8W646 Bgee:F8W646
Uniprot:F8W646
Length = 156
Score = 97 (39.2 bits), Expect = 0.00020, P = 0.00020
Identities = 32/108 (29%), Positives = 48/108 (44%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRP-----VGR 56
+D +K RG GF+T+A+ + V+ M H++ G V RA +ED RP V +
Sbjct: 47 RDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKK 106
Query: 57 MSHGGYGAYNA---YISAATRYAALGAPTLYDHPGSFYGRGESSQRIG 101
+ GG+G Y + Y G + GS +G G S G
Sbjct: 107 IFVGGFGGSRGGGGYGGSGDGYNGFG------NDGSNFGGGGSYNDFG 148
>UNIPROTKB|G3MYU0 [details] [associations]
symbol:G3MYU0 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074566 EMBL:DAAA02005585
Ensembl:ENSBTAT00000064368 Uniprot:G3MYU0
Length = 256
Score = 100 (40.3 bits), Expect = 0.00020, P = 0.00020
Identities = 30/96 (31%), Positives = 44/96 (45%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
D+GS RG F TF DSV+ +++ H + G V A K++ R H GY
Sbjct: 148 DRGSDKKRGFAFETFDDHDSVDKIVIQKYHTVNGHNCEVREALSKQEMASASSR-KHRGY 206
Query: 63 GAYN-AYISAATRYAALGAPTLYDHPGSFYGRGESS 97
G+ Y + + Y G+ Y++ GS G G S
Sbjct: 207 GSGGQGYGNQGSGYGGSGSYDSYNNCGSGGGFGGGS 242
>UNIPROTKB|F1LUE7 [details] [associations]
symbol:F1LUE7 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00566822
Ensembl:ENSRNOT00000052211 ArrayExpress:F1LUE7 Uniprot:F1LUE7
Length = 256
Score = 74 (31.1 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 16/50 (32%), Positives = 25/50 (50%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRP 53
D G+K RG GF+T++ + V+ + VV RA +ED +P
Sbjct: 30 DCGNKRSRGFGFLTYSCVEEVDAAVCARPHKAAVRVVGKRAVSREDSVKP 79
Score = 69 (29.3 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 13/37 (35%), Positives = 24/37 (64%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKVRQ 138
KK++VG + ++ +LR YF ++G+I + V + RQ
Sbjct: 86 KKLYVGGIKEDTEEYNLRGYFKKYGKIETIEVMEGRQ 122
>UNIPROTKB|D6RD83 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC124016
HGNC:HGNC:5036 ChiTaRS:HNRNPD InterPro:IPR012956 Pfam:PF08143
IPI:IPI00968092 ProteinModelPortal:D6RD83 SMR:D6RD83
Ensembl:ENST00000509107 ArrayExpress:D6RD83 Bgee:D6RD83
Uniprot:D6RD83
Length = 92
Score = 90 (36.7 bits), Expect = 0.00021, P = 0.00021
Identities = 24/73 (32%), Positives = 37/73 (50%)
Query: 60 GGYGAYNAYISAATRYAALGAPTLYDHPGSF--YGRGESSQRIGKKIFVGRLPQEATAED 117
GG GA A +A + A H S + ++QR K+F+G L + T +D
Sbjct: 7 GGDGAAAAATAAGAKIDASKNEEDEGHSNSSPRHSEAATAQREEWKMFIGGLSWDTTKKD 66
Query: 118 LRRYFSRFGRILD 130
L+ YFS+FG ++D
Sbjct: 67 LKDYFSKFGEVVD 79
>UNIPROTKB|H0YA96 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC124016 HGNC:HGNC:5036
ChiTaRS:HNRNPD Ensembl:ENST00000514671 Uniprot:H0YA96
Length = 210
Score = 73 (30.8 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP 134
KKIFVG L + E +R YF FG + + +P
Sbjct: 86 KKIFVGGLSPDTPEEKIREYFGGFGEVESIELP 118
Score = 67 (28.6 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 17/52 (32%), Positives = 27/52 (51%)
Query: 11 RGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
RG GF+ F ++SV+ +M H+L G + RA + PV ++ GG
Sbjct: 42 RGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTK-EPVKKIFVGG 92
>ZFIN|ZDB-GENE-030131-2249 [details] [associations]
symbol:hnrnpa0a "heterogeneous nuclear
ribonucleoprotein A0a" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-2249
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000234442 OrthoDB:EOG4W6NX4
EMBL:BC066672 IPI:IPI00995382 RefSeq:NP_997810.1 UniGene:Dr.75559
ProteinModelPortal:Q6NYB0 SMR:Q6NYB0 STRING:Q6NYB0 PRIDE:Q6NYB0
GeneID:323529 KEGG:dre:323529 CTD:323529 InParanoid:Q6NYB0
NextBio:20808302 ArrayExpress:Q6NYB0 Bgee:Q6NYB0 Uniprot:Q6NYB0
Length = 305
Score = 78 (32.5 bits), Expect = 0.00025, Sum P(2) = 0.00025
Identities = 18/52 (34%), Positives = 29/52 (55%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRP 53
++Q K R GF+T++S D ++ M H L G+ V + RA +ED +P
Sbjct: 43 QNQQLKRSRCFGFVTYSSPDEADSAMSARPHILDGNNVELKRAVAREDAGKP 94
Score = 65 (27.9 bits), Expect = 0.00025, Sum P(2) = 0.00025
Identities = 14/37 (37%), Positives = 23/37 (62%)
Query: 92 GRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRI 128
G+ E+ ++ KKIF+G L + + LR FS+FG +
Sbjct: 92 GKPEALAKV-KKIFIGGLKDDIEEDHLRDCFSQFGAV 127
>UNIPROTKB|E2RF95 [details] [associations]
symbol:E2RF95 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03008728
Ensembl:ENSCAFT00000001067 OMA:CTTATVE Uniprot:E2RF95
Length = 308
Score = 77 (32.2 bits), Expect = 0.00028, Sum P(2) = 0.00028
Identities = 20/54 (37%), Positives = 28/54 (51%)
Query: 3 KDQGSKAHRGIGFITFASA--DSVENLM-VDTHELGGSTVVVDRATPKEDDFRP 53
+D +K RG GFIT +A + V+ M H++ G V RA +ED RP
Sbjct: 47 RDPNTKGSRGFGFITCTTATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRP 100
Score = 66 (28.3 bits), Expect = 0.00028, Sum P(2) = 0.00028
Identities = 16/39 (41%), Positives = 22/39 (56%)
Query: 95 ESSQRIG-----KKIFVGRLPQEATAEDLRRYFSRFGRI 128
E SQR G KK FVG + ++ LR YF ++G+I
Sbjct: 95 EDSQRPGAHLTVKKTFVGGIKEDTEEHHLRDYFEQYGKI 133
>UNIPROTKB|D6RAF8 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0043488 "regulation of mRNA stability" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0048255 HOGENOM:HOG000234441 EMBL:AC124016
HGNC:HGNC:5036 ChiTaRS:HNRNPD InterPro:IPR012956 Pfam:PF08143
IPI:IPI00965952 ProteinModelPortal:D6RAF8 SMR:D6RAF8
Ensembl:ENST00000507010 ArrayExpress:D6RAF8 Bgee:D6RAF8
Uniprot:D6RAF8
Length = 221
Score = 73 (30.8 bits), Expect = 0.00029, Sum P(2) = 0.00029
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP 134
KKIFVG L + E +R YF FG + + +P
Sbjct: 182 KKIFVGGLSPDTPEEKIREYFGGFGEVESIELP 214
Score = 67 (28.6 bits), Expect = 0.00029, Sum P(2) = 0.00029
Identities = 17/52 (32%), Positives = 27/52 (51%)
Query: 11 RGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
RG GF+ F ++SV+ +M H+L G + RA + PV ++ GG
Sbjct: 138 RGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTK-EPVKKIFVGG 188
>TAIR|locus:2168848 [details] [associations]
symbol:AT5G40490 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005829 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0030529 EMBL:AB009052 HOGENOM:HOG000234441
HSSP:Q61474 KO:K12741 eggNOG:NOG289504 EMBL:AY136466
IPI:IPI00518075 RefSeq:NP_198865.1 UniGene:At.30284
ProteinModelPortal:Q9FM47 SMR:Q9FM47 PaxDb:Q9FM47 PRIDE:Q9FM47
EnsemblPlants:AT5G40490.1 GeneID:834047 KEGG:ath:AT5G40490
TAIR:At5g40490 InParanoid:Q9FM47 OMA:YESEDMV PhylomeDB:Q9FM47
ProtClustDB:CLSN2916909 ArrayExpress:Q9FM47 Genevestigator:Q9FM47
Uniprot:Q9FM47
Length = 423
Score = 80 (33.2 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 15/45 (33%), Positives = 26/45 (57%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPK 47
KD+ + RG GF+T+A + V+ ++ D H + G V + R P+
Sbjct: 75 KDRKTGQPRGFGFVTYADSSVVDKVIQDNHIIIGKQVEIKRTIPR 119
Score = 65 (27.9 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 12/38 (31%), Positives = 22/38 (57%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKVRQH 139
KKIFVG +P ++ + +F +FG + + + +R H
Sbjct: 130 KKIFVGGIPSSVDDDEFKEFFMQFGELKEHQI--MRDH 165
>UNIPROTKB|F1LVU1 [details] [associations]
symbol:F1LVU1 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00950080
Ensembl:ENSRNOT00000064004 Uniprot:F1LVU1
Length = 188
Score = 73 (30.8 bits), Expect = 0.00032, Sum P(2) = 0.00032
Identities = 15/36 (41%), Positives = 24/36 (66%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKVRQ 138
KIFVG + ++A +LR YF ++G+I + V + RQ
Sbjct: 92 KIFVGGIKEDAEEYNLRDYFEKYGKIETIEVMEDRQ 127
Score = 64 (27.6 bits), Expect = 0.00032, Sum P(2) = 0.00032
Identities = 13/44 (29%), Positives = 23/44 (52%)
Query: 11 RGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRP 53
+ GF+T++ + V+ M H++ G V RA +ED +P
Sbjct: 42 QSFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKP 85
>UNIPROTKB|Q5ZIH1 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0042162 "telomeric DNA binding"
evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0043488 GO:GO:0042162
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295
UniGene:Gga.4605 GeneTree:ENSGT00700000104347 KO:K13044
OrthoDB:EOG49W2FZ CTD:3184 OMA:PNQNWNQ EMBL:AADN02009040
EMBL:AJ720813 IPI:IPI00597667 RefSeq:NP_001026314.1 SMR:Q5ZIH1
STRING:Q5ZIH1 Ensembl:ENSGALT00000018234 GeneID:422602
KEGG:gga:422602 InParanoid:Q5ZIH1 NextBio:20825212 Uniprot:Q5ZIH1
Length = 257
Score = 74 (31.1 bits), Expect = 0.00033, Sum P(2) = 0.00033
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP 134
KKIFVG L + E +R YF FG + + +P
Sbjct: 84 KKIFVGGLSPDTPEEKIREYFGAFGEVESIELP 116
Score = 67 (28.6 bits), Expect = 0.00033, Sum P(2) = 0.00033
Identities = 17/52 (32%), Positives = 27/52 (51%)
Query: 11 RGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
RG GF+ F ++SV+ +M H+L G + RA + PV ++ GG
Sbjct: 40 RGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTK-EPVKKIFVGG 90
>UNIPROTKB|F1NCW4 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0042162 "telomeric DNA binding"
evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0043488 GO:GO:0042162
GeneTree:ENSGT00700000104347 OMA:PNQNWNQ EMBL:AADN02009040
IPI:IPI00819680 Ensembl:ENSGALT00000038011 ArrayExpress:F1NCW4
Uniprot:F1NCW4
Length = 258
Score = 74 (31.1 bits), Expect = 0.00033, Sum P(2) = 0.00033
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP 134
KKIFVG L + E +R YF FG + + +P
Sbjct: 85 KKIFVGGLSPDTPEEKIREYFGAFGEVESIELP 117
Score = 67 (28.6 bits), Expect = 0.00033, Sum P(2) = 0.00033
Identities = 17/52 (32%), Positives = 27/52 (51%)
Query: 11 RGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
RG GF+ F ++SV+ +M H+L G + RA + PV ++ GG
Sbjct: 41 RGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTK-EPVKKIFVGG 91
>UNIPROTKB|Q7ZYE9 [details] [associations]
symbol:hnrnpab "Hnrpab-prov protein" species:8355 "Xenopus
laevis" [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG002295 HSSP:Q14103 KO:K13044 InterPro:IPR012956
Pfam:PF08143 CTD:3182 EMBL:BC043814 RefSeq:NP_001080489.1
UniGene:Xl.45404 ProteinModelPortal:Q7ZYE9 SMR:Q7ZYE9 IntAct:Q7ZYE9
GeneID:380181 KEGG:xla:380181 Xenbase:XB-GENE-6043063
Uniprot:Q7ZYE9
Length = 324
Score = 76 (31.8 bits), Expect = 0.00034, Sum P(2) = 0.00034
Identities = 16/33 (48%), Positives = 20/33 (60%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP 134
KKIFVG L EA + +R YF FG I + +P
Sbjct: 148 KKIFVGGLNPEAGEDQIREYFETFGEIEAIELP 180
Score = 67 (28.6 bits), Expect = 0.00034, Sum P(2) = 0.00034
Identities = 18/59 (30%), Positives = 29/59 (49%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
D + RG GFI F A+SV+ ++ H L G + +A + D P+ ++ GG
Sbjct: 98 DPNTGRSRGFGFILFKDAESVDKVLEHKEHRLDGRLIDPKKAMAMKKD--PIKKIFVGG 154
>UNIPROTKB|F1M6C7 [details] [associations]
symbol:F1M6C7 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 IPI:IPI00370270
Ensembl:ENSRNOT00000014756 Uniprot:F1M6C7
Length = 273
Score = 84 (34.6 bits), Expect = 0.00039, Sum P(2) = 0.00039
Identities = 18/52 (34%), Positives = 28/52 (53%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRP 53
+D +K RG GF+T+ + + V+ M H++ GS V RA +ED P
Sbjct: 38 RDPNTKRSRGFGFVTYTTVEEVDAAMNARPHKVDGSFVEPKRAVSREDSQSP 89
Score = 53 (23.7 bits), Expect = 0.00039, Sum P(2) = 0.00039
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRI 128
K+I VG + ++ LR YF +G+I
Sbjct: 96 KEISVGGIKEDTEEHHLRDYFEHYGKI 122
>UNIPROTKB|F1N4K3 [details] [associations]
symbol:F1N4K3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:DAAA02019527
IPI:IPI00906169 Ensembl:ENSBTAT00000002951 OMA:HAINGHH
Uniprot:F1N4K3
Length = 329
Score = 75 (31.5 bits), Expect = 0.00040, Sum P(2) = 0.00040
Identities = 17/47 (36%), Positives = 25/47 (53%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKE 48
+D S+ RG GF+TF+S V+ M H + G + RA P+E
Sbjct: 42 RDFASQRSRGCGFVTFSSVTEVDAAMAARPHSIDGRVLEPRRAIPRE 88
Score = 68 (29.0 bits), Expect = 0.00040, Sum P(2) = 0.00040
Identities = 13/37 (35%), Positives = 22/37 (59%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKVRQ 138
KK+FVG + ++ LR YF ++G+I + + RQ
Sbjct: 100 KKLFVGGIKEDTEEHHLREYFEKYGKIDAIEIITDRQ 136
>DICTYBASE|DDB_G0279695 [details] [associations]
symbol:DDB_G0279695 "RNA recognition motif-containing
protein RRM" species:44689 "Dictyostelium discoideum" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0279695 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000032 eggNOG:COG0724
ProtClustDB:CLSZ2430003 RefSeq:XP_641604.1
ProteinModelPortal:Q54WE9 PRIDE:Q54WE9 EnsemblProtists:DDB0233747
GeneID:8622181 KEGG:ddi:DDB_G0279695 InParanoid:Q54WE9 OMA:HEMDGRQ
Uniprot:Q54WE9
Length = 84
Score = 87 (35.7 bits), Expect = 0.00045, P = 0.00045
Identities = 17/44 (38%), Positives = 28/44 (63%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPK 47
D+ +K +G GF+TF +A+S +N + HE+ G +VV+ A K
Sbjct: 37 DRITKRSKGFGFVTFDNAESAQNAVNSVHEMDGRQLVVNLAFDK 80
>UNIPROTKB|Q9LEB3 [details] [associations]
symbol:RBP47 "Polyadenylate-binding protein RBP47"
species:4092 "Nicotiana plumbaginifolia" [GO:0005634 "nucleus"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0034605
"cellular response to heat" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0034605 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0010494 GO:GO:0008143 HSSP:P33240
EMBL:AJ292768 ProteinModelPortal:Q9LEB3 Uniprot:Q9LEB3
Length = 428
Score = 100 (40.3 bits), Expect = 0.00049, P = 0.00049
Identities = 41/131 (31%), Positives = 58/131 (44%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYG 63
D + +G GF+ F D E T E+ G V + P +H Y
Sbjct: 212 DANTGHSKGYGFVRFG--DESERSRAMT-EMNG--VYCSSRAMRIGVATPKKPSAHEQYS 266
Query: 64 AYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFS 123
+ +S YA+ GA T H GS G+SS IFVG L E T E+LR+ F+
Sbjct: 267 SQAVILSGG--YASNGAAT---H-GS-QSDGDSSNTT---IFVGGLDSEVTDEELRQSFN 316
Query: 124 RFGRILDVYVP 134
+FG ++ V +P
Sbjct: 317 QFGEVVSVKIP 327
>UNIPROTKB|H0Y8G5 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC124016 HGNC:HGNC:5036
ChiTaRS:HNRNPD Ensembl:ENST00000509263 Bgee:H0Y8G5 Uniprot:H0Y8G5
Length = 261
Score = 73 (30.8 bits), Expect = 0.00049, Sum P(2) = 0.00049
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP 134
KKIFVG L + E +R YF FG + + +P
Sbjct: 115 KKIFVGGLSPDTPEEKIREYFGGFGEVESIELP 147
Score = 67 (28.6 bits), Expect = 0.00049, Sum P(2) = 0.00049
Identities = 17/52 (32%), Positives = 27/52 (51%)
Query: 11 RGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
RG GF+ F ++SV+ +M H+L G + RA + PV ++ GG
Sbjct: 71 RGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTK-EPVKKIFVGG 121
>UNIPROTKB|F1PVY3 [details] [associations]
symbol:F1PVY3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03016228
Ensembl:ENSCAFT00000027434 Uniprot:F1PVY3
Length = 301
Score = 82 (33.9 bits), Expect = 0.00050, Sum P(2) = 0.00050
Identities = 17/48 (35%), Positives = 27/48 (56%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKED 49
+D +K RG GF+T+A+ + V+ M H++ G V RA +ED
Sbjct: 46 RDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSRED 93
Score = 56 (24.8 bits), Expect = 0.00050, Sum P(2) = 0.00050
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRI 128
KKIFVG + +E T + LR YF +G+I
Sbjct: 104 KKIFVGGI-KENTEDHLRDYFE-YGKI 128
>UNIPROTKB|B4DM51 [details] [associations]
symbol:MSI2 "RNA-binding protein Musashi homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOGENOM:HOG000234441 HOVERGEN:HBG002295 UniGene:Hs.658922
HGNC:HGNC:18585 ChiTaRS:MSI2 EMBL:AC005325 EMBL:AC007431
EMBL:AC015883 EMBL:AC091181 EMBL:AK297295 IPI:IPI00908857
SMR:B4DM51 STRING:B4DM51 Ensembl:ENST00000442934 Uniprot:B4DM51
Length = 267
Score = 94 (38.1 bits), Expect = 0.00051, Sum P(2) = 0.00051
Identities = 20/51 (39%), Positives = 28/51 (54%)
Query: 4 DQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRP 53
D+ + HRG GF+TF + D VE + + HE+ V +A PKE F P
Sbjct: 83 DKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPKEVMFPP 133
Score = 34 (17.0 bits), Expect = 0.00051, Sum P(2) = 0.00051
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 64 AYNAYISAATRYAALGAPTLYDHPGSFYG 92
AY ++AA AA G+ + PG F G
Sbjct: 187 AYGP-VAAAAVAAARGSGSNPARPGGFPG 214
>UNIPROTKB|D4A8U2 [details] [associations]
symbol:D4A8U2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00947740
ProteinModelPortal:D4A8U2 Ensembl:ENSRNOT00000064543
ArrayExpress:D4A8U2 Uniprot:D4A8U2
Length = 196
Score = 69 (29.3 bits), Expect = 0.00052, Sum P(2) = 0.00052
Identities = 15/52 (28%), Positives = 24/52 (46%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRP 53
+D +K R F+T++ V+ M H + G V RA +ED +P
Sbjct: 46 RDPQTKRSRSFSFVTYSCVKEVDAAMCAQPHNVDGRVVEPKRAVSREDSVKP 97
Score = 68 (29.0 bits), Expect = 0.00052, Sum P(2) = 0.00052
Identities = 14/36 (38%), Positives = 23/36 (63%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKVR 137
KKIFVG + ++ +LR YF ++G+I + V + R
Sbjct: 104 KKIFVGGIKEDTEEYNLRDYFEKYGKIKTMEVMEDR 139
>UNIPROTKB|Q13151 [details] [associations]
symbol:HNRNPA0 "Heterogeneous nuclear ribonucleoprotein A0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IPI] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=ISS;TAS] [GO:0006954
"inflammatory response" evidence=ISS] [GO:0032496 "response to
lipopolysaccharide" evidence=ISS] [GO:0003723 "RNA binding"
evidence=TAS] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0008380 "RNA splicing"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005654 EMBL:CH471062 GO:GO:0000166 GO:GO:0032496
GO:GO:0006954 Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0017091
GO:GO:0030529 GO:GO:0000398 eggNOG:COG0724 GO:GO:0070935
HOVERGEN:HBG002295 HOGENOM:HOG000234442 EMBL:U23803 EMBL:CR456986
EMBL:BC001008 EMBL:BC007271 EMBL:BC009284 EMBL:BC011972
EMBL:BC012980 EMBL:BC018949 EMBL:BC019271 EMBL:BC028976
EMBL:BC030249 IPI:IPI00011913 RefSeq:NP_006796.1 UniGene:Hs.645902
UniGene:Hs.96996 ProteinModelPortal:Q13151 SMR:Q13151 IntAct:Q13151
MINT:MINT-5001237 STRING:Q13151 PhosphoSite:Q13151 DMDM:8134660
REPRODUCTION-2DPAGE:Q13151 SWISS-2DPAGE:Q13151 PaxDb:Q13151
PeptideAtlas:Q13151 PRIDE:Q13151 DNASU:10949
Ensembl:ENST00000314940 GeneID:10949 KEGG:hsa:10949 UCSC:uc003lbt.3
CTD:10949 GeneCards:GC05M137114 HGNC:HGNC:5030 HPA:HPA036569
MIM:609409 neXtProt:NX_Q13151 PharmGKB:PA162391106
InParanoid:Q13151 KO:K12894 OMA:GPMKQNL OrthoDB:EOG4W6NX4
PhylomeDB:Q13151 GenomeRNAi:10949 NextBio:41601 Bgee:Q13151
CleanEx:HS_HNRNPA0 Genevestigator:Q13151 GermOnline:ENSG00000177733
Uniprot:Q13151
Length = 305
Score = 79 (32.9 bits), Expect = 0.00056, Sum P(2) = 0.00056
Identities = 16/48 (33%), Positives = 28/48 (58%)
Query: 7 SKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRP 53
+K R GF+T+++ + + M + H + G+TV + RA +ED RP
Sbjct: 44 TKRSRCFGFVTYSNVEEADAAMAASPHAVDGNTVELKRAVSREDSARP 91
Score = 60 (26.2 bits), Expect = 0.00056, Sum P(2) = 0.00056
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRI 128
KK+FVG L + DL +FS+FG +
Sbjct: 98 KKLFVGGLKGDVAEGDLIEHFSQFGTV 124
>UNIPROTKB|F6RSR1 [details] [associations]
symbol:HNRNPA0 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=IEA] [GO:0032496 "response to lipopolysaccharide"
evidence=IEA] [GO:0019901 "protein kinase binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0006954
"inflammatory response" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0032496
GO:GO:0006954 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0070935
GeneTree:ENSGT00700000104255 OMA:GPMKQNL EMBL:DAAA02020383
IPI:IPI00687625 Ensembl:ENSBTAT00000022514 Uniprot:F6RSR1
Length = 310
Score = 79 (32.9 bits), Expect = 0.00059, Sum P(2) = 0.00059
Identities = 16/48 (33%), Positives = 28/48 (58%)
Query: 7 SKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRP 53
+K R GF+T+++ + + M + H + G+TV + RA +ED RP
Sbjct: 49 TKRSRCFGFVTYSNVEEADAAMAASPHAVDGNTVELKRAVSREDSARP 96
Score = 60 (26.2 bits), Expect = 0.00059, Sum P(2) = 0.00059
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRI 128
KK+FVG L + DL +FS+FG +
Sbjct: 103 KKLFVGGLKGDVAEGDLIEHFSQFGTV 129
>UNIPROTKB|E2RBV8 [details] [associations]
symbol:HNRNPA0 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0070935 "3'-UTR-mediated mRNA
stabilization" evidence=IEA] [GO:0032496 "response to
lipopolysaccharide" evidence=IEA] [GO:0019901 "protein kinase
binding" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0006954 "inflammatory response" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0032496 GO:GO:0006954 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0070935 GeneTree:ENSGT00700000104255 CTD:10949
KO:K12894 OMA:GPMKQNL EMBL:AAEX03007810 RefSeq:XP_538645.2
ProteinModelPortal:E2RBV8 Ensembl:ENSCAFT00000001730 GeneID:481524
KEGG:cfa:481524 NextBio:20856300 Uniprot:E2RBV8
Length = 310
Score = 79 (32.9 bits), Expect = 0.00059, Sum P(2) = 0.00059
Identities = 16/48 (33%), Positives = 28/48 (58%)
Query: 7 SKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRP 53
+K R GF+T+++ + + M + H + G+TV + RA +ED RP
Sbjct: 44 TKRSRCFGFVTYSNVEEADAAMAASPHAVDGNTVELKRAVSREDSARP 91
Score = 60 (26.2 bits), Expect = 0.00059, Sum P(2) = 0.00059
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRI 128
KK+FVG L + DL +FS+FG +
Sbjct: 98 KKLFVGGLKGDVAEGDLIEHFSQFGTV 124
>UNIPROTKB|F1RH94 [details] [associations]
symbol:HNRNPA0 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=IEA] [GO:0032496 "response to lipopolysaccharide"
evidence=IEA] [GO:0019901 "protein kinase binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0006954
"inflammatory response" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0032496
GO:GO:0006954 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0070935
GeneTree:ENSGT00700000104255 OMA:GPMKQNL EMBL:CU468422
Ensembl:ENSSSCT00000015648 Uniprot:F1RH94
Length = 315
Score = 79 (32.9 bits), Expect = 0.00061, Sum P(2) = 0.00061
Identities = 16/48 (33%), Positives = 28/48 (58%)
Query: 7 SKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRP 53
+K R GF+T+++ + + M + H + G+TV + RA +ED RP
Sbjct: 49 TKRSRCFGFVTYSNVEEADAAMAASPHAVDGNTVELKRAVSREDSARP 96
Score = 60 (26.2 bits), Expect = 0.00061, Sum P(2) = 0.00061
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRI 128
KK+FVG L + DL +FS+FG +
Sbjct: 103 KKLFVGGLKGDVAEGDLIEHFSQFGTV 129
>ZFIN|ZDB-GENE-040426-2717 [details] [associations]
symbol:hnrpdl "heterogeneous nuclear
ribonucleoprotein D-like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-040426-2717
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103
CTD:9987 GeneTree:ENSGT00700000104347 KO:K13044 OMA:QHPPADN
OrthoDB:EOG49W2FZ EMBL:CR847788 EMBL:BC055525 IPI:IPI00500216
RefSeq:NP_998557.1 UniGene:Dr.75234 SMR:Q7SXN2 STRING:Q7SXN2
Ensembl:ENSDART00000020631 GeneID:406701 KEGG:dre:406701
InParanoid:Q7SXN2 NextBio:20818224 Uniprot:Q7SXN2
Length = 296
Score = 77 (32.2 bits), Expect = 0.00063, Sum P(2) = 0.00063
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP 134
KK+FVG L + T E LR YF +G I + +P
Sbjct: 115 KKVFVGGLSPDITEEQLREYFGVYGEIESIELP 147
Score = 62 (26.9 bits), Expect = 0.00063, Sum P(2) = 0.00063
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 11 RGIGFITFASADSVENLMVDT-HELGGSTVVVDRA 44
RG GF+ F A+SV+ ++ T H+L G + RA
Sbjct: 71 RGFGFVLFKDAESVDRVLELTEHKLDGKLIDPKRA 105
>UNIPROTKB|F1N235 [details] [associations]
symbol:F1N235 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 EMBL:DAAA02006449 IPI:IPI01002976
Ensembl:ENSBTAT00000014868 OMA:LENGTGR Uniprot:F1N235
Length = 353
Score = 77 (32.2 bits), Expect = 0.00065, Sum P(2) = 0.00065
Identities = 18/48 (37%), Positives = 26/48 (54%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKED 49
+D S+ R GFITF+S ++ M H + G V+ RA P+ED
Sbjct: 54 RDPASQKSRRFGFITFSSMAELDAAMAARPHFIDGKMVMPKRAVPRED 101
Score = 64 (27.6 bits), Expect = 0.00065, Sum P(2) = 0.00065
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRI 128
KK+FVG + ++ LR YF ++G+I
Sbjct: 112 KKLFVGGITEDMKEHHLRDYFEKYGKI 138
>UNIPROTKB|F1RVD1 [details] [associations]
symbol:HNRPDL "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 CTD:9987
GeneTree:ENSGT00700000104347 KO:K13044 EMBL:CU627987
RefSeq:XP_003129409.3 UniGene:Ssc.55768 Ensembl:ENSSSCT00000010127
GeneID:100511704 KEGG:ssc:100511704 Uniprot:F1RVD1
Length = 216
Score = 80 (33.2 bits), Expect = 0.00066, Sum P(2) = 0.00066
Identities = 20/65 (30%), Positives = 31/65 (47%)
Query: 1 MPKDQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSH 59
+P D + RG FIT+ + V+ L+ H++G + A PKE +R +
Sbjct: 60 LPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKEV-YRQQQQQQK 118
Query: 60 GGYGA 64
GG GA
Sbjct: 119 GGRGA 123
Score = 53 (23.7 bits), Expect = 0.00066, Sum P(2) = 0.00066
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 61 GYGAYNAYISAATRYAALGAPTLYDHPGSFYG 92
GYG YN+ Y+ G YD+ G YG
Sbjct: 153 GYGNYNSAYGGDQNYSGYGG---YDYTGYNYG 181
>UNIPROTKB|E2RK48 [details] [associations]
symbol:MSI1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K14411
GeneTree:ENSGT00700000104255 CTD:4440 EMBL:AAEX03014735
RefSeq:XP_854252.2 Ensembl:ENSCAFT00000016345 GeneID:611488
KEGG:cfa:611488 Uniprot:E2RK48
Length = 362
Score = 74 (31.1 bits), Expect = 0.00070, Sum P(2) = 0.00070
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILD 130
KKIFVG L T ED+++YF +F ++ D
Sbjct: 109 KKIFVGGLSVNTTVEDVKQYFEQFEKVDD 137
Score = 68 (29.0 bits), Expect = 0.00070, Sum P(2) = 0.00070
Identities = 17/55 (30%), Positives = 27/55 (49%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGR 56
+D +K RG GF+TF V+ ++ + HEL T+ A P+ + V R
Sbjct: 53 RDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVTR 107
>UNIPROTKB|B4DTC3 [details] [associations]
symbol:HNRNPD "cDNA FLJ54150, highly similar to
Heterogeneous nuclear ribonucleoprotein D0" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 HOGENOM:HOG000234441 HOVERGEN:HBG002295 EMBL:AC124016
UniGene:Hs.480073 HGNC:HGNC:5036 ChiTaRS:HNRNPD InterPro:IPR012956
Pfam:PF08143 EMBL:AK300149 IPI:IPI01014602 SMR:B4DTC3 STRING:B4DTC3
Ensembl:ENST00000543098 Uniprot:B4DTC3
Length = 303
Score = 73 (30.8 bits), Expect = 0.00077, Sum P(2) = 0.00077
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP 134
KKIFVG L + E +R YF FG + + +P
Sbjct: 130 KKIFVGGLSPDTPEEKIREYFGGFGEVESIELP 162
Score = 67 (28.6 bits), Expect = 0.00077, Sum P(2) = 0.00077
Identities = 17/52 (32%), Positives = 27/52 (51%)
Query: 11 RGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
RG GF+ F ++SV+ +M H+L G + RA + PV ++ GG
Sbjct: 86 RGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTK-EPVKKIFVGG 136
>UNIPROTKB|G3V6A4 [details] [associations]
symbol:Hnrpd "Protein Hnrpd" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:620365 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 GeneTree:ENSGT00700000104347 KO:K13044
InterPro:IPR012956 Pfam:PF08143 RefSeq:NP_001076009.1
UniGene:Rn.94022 GeneID:79256 KEGG:rno:79256 CTD:79256
NextBio:614748 EMBL:CH474022 Ensembl:ENSRNOT00000003158
Uniprot:G3V6A4
Length = 304
Score = 73 (30.8 bits), Expect = 0.00078, Sum P(2) = 0.00078
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP 134
KKIFVG L + E +R YF FG + + +P
Sbjct: 180 KKIFVGGLSPDTPEEKIREYFGGFGEVESIELP 212
Score = 67 (28.6 bits), Expect = 0.00078, Sum P(2) = 0.00078
Identities = 17/52 (32%), Positives = 27/52 (51%)
Query: 11 RGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
RG GF+ F ++SV+ +M H+L G + RA + PV ++ GG
Sbjct: 136 RGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTK-EPVKKIFVGG 186
>UNIPROTKB|A5D9H5 [details] [associations]
symbol:HNRPD "Heterogeneous nuclear ribonucleoprotein D"
species:9913 "Bos taurus" [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104347 KO:K13044 CTD:3184 InterPro:IPR012956
Pfam:PF08143 EMBL:DAAA02018245 EMBL:BT030594 IPI:IPI00905408
RefSeq:NP_001091533.1 UniGene:Bt.52882 SMR:A5D9H5 STRING:A5D9H5
Ensembl:ENSBTAT00000056365 GeneID:527471 KEGG:bta:527471
NextBio:20874604 Uniprot:A5D9H5
Length = 306
Score = 73 (30.8 bits), Expect = 0.00079, Sum P(2) = 0.00079
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP 134
KKIFVG L + E +R YF FG + + +P
Sbjct: 182 KKIFVGGLSPDTPEEKIREYFGGFGEVESIELP 214
Score = 67 (28.6 bits), Expect = 0.00079, Sum P(2) = 0.00079
Identities = 17/52 (32%), Positives = 27/52 (51%)
Query: 11 RGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
RG GF+ F ++SV+ +M H+L G + RA + PV ++ GG
Sbjct: 138 RGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTK-EPVKKIFVGG 188
>UNIPROTKB|H0YHB7 [details] [associations]
symbol:MSI1 "RNA-binding protein Musashi homolog 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC003982 HGNC:HGNC:7330 Ensembl:ENST00000546985 Uniprot:H0YHB7
Length = 233
Score = 92 (37.4 bits), Expect = 0.00080, Sum P(2) = 0.00080
Identities = 19/46 (41%), Positives = 26/46 (56%)
Query: 4 DQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKE 48
D+ + HRG GF+TF S D VE + + HE+ V +A PKE
Sbjct: 75 DKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQPKE 120
Score = 34 (17.0 bits), Expect = 0.00080, Sum P(2) = 0.00080
Identities = 8/27 (29%), Positives = 10/27 (37%)
Query: 61 GYGAYNAYISAATRYAALGAPTLYDHP 87
GY + A A+ Y L Y P
Sbjct: 150 GYPGFQATTYASRSYTGLAPGYTYQFP 176
>UNIPROTKB|F1M0Q5 [details] [associations]
symbol:F1M0Q5 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00559641
ProteinModelPortal:F1M0Q5 Ensembl:ENSRNOT00000036216 Uniprot:F1M0Q5
Length = 165
Score = 69 (29.3 bits), Expect = 0.00083, Sum P(2) = 0.00083
Identities = 16/52 (30%), Positives = 26/52 (50%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRP 53
+D +K R GF+T+ + + V+ M ++ G V RA +ED RP
Sbjct: 66 RDPNTKRSRSSGFVTYNTVEEVDAAMNARPQKMDGRLVKPKRAVSREDSQRP 117
Score = 63 (27.2 bits), Expect = 0.00083, Sum P(2) = 0.00083
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 95 ESSQRIG-----KKIFVGRLPQEATAEDLRRYFSRFGRI 128
E SQR G KKIF G + ++ ++R YF +G+I
Sbjct: 112 EDSQRPGTQLTVKKIFEGGIKEDTEEHNVRDYFEHYGKI 150
>UNIPROTKB|I3LP80 [details] [associations]
symbol:HNRPDL "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104347
EMBL:CU627987 Ensembl:ENSSSCT00000027195 OMA:NVVEMEM Uniprot:I3LP80
Length = 231
Score = 80 (33.2 bits), Expect = 0.00085, Sum P(2) = 0.00085
Identities = 20/65 (30%), Positives = 31/65 (47%)
Query: 1 MPKDQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSH 59
+P D + RG FIT+ + V+ L+ H++G + A PKE +R +
Sbjct: 56 LPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKEV-YRQQQQQQK 114
Query: 60 GGYGA 64
GG GA
Sbjct: 115 GGRGA 119
Score = 53 (23.7 bits), Expect = 0.00085, Sum P(2) = 0.00085
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 61 GYGAYNAYISAATRYAALGAPTLYDHPGSFYG 92
GYG YN+ Y+ G YD+ G YG
Sbjct: 149 GYGNYNSAYGGDQNYSGYGG---YDYTGYNYG 177
>WB|WBGene00001999 [details] [associations]
symbol:hrp-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0008340 "determination of adult
lifespan" evidence=IMP] [GO:0040015 "negative regulation of
multicellular organism growth" evidence=IMP] [GO:0048477
"oogenesis" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0002009 "morphogenesis of an epithelium" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0000781 "chromosome, telomeric region" evidence=IDA]
[GO:0031581 "hemidesmosome assembly" evidence=IGI] [GO:0000398
"mRNA splicing, via spliceosome" evidence=ISS] [GO:0003723 "RNA
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0008340 GO:GO:0009792 GO:GO:0002009 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0048477 GO:GO:0003723 GO:GO:0040035 GO:GO:0030529
GO:GO:0040015 GO:GO:0000398 GO:GO:0000781 eggNOG:COG0724
GO:GO:0031581 GeneTree:ENSGT00700000104255 KO:K12741 EMBL:D10877
EMBL:FO081370 PIR:S35500 RefSeq:NP_001023199.1
RefSeq:NP_001040944.1 RefSeq:NP_001040945.1 RefSeq:NP_500326.2
UniGene:Cel.7537 ProteinModelPortal:Q22037 SMR:Q22037 IntAct:Q22037
STRING:Q22037 PaxDb:Q22037 PRIDE:Q22037 EnsemblMetazoa:F42A6.7a.1
EnsemblMetazoa:F42A6.7a.2 GeneID:177101 KEGG:cel:CELE_F42A6.7
UCSC:F42A6.7a.1 CTD:177101 WormBase:F42A6.7a WormBase:F42A6.7b
WormBase:F42A6.7c WormBase:F42A6.7d InParanoid:Q22037 OMA:YGGGWGQ
NextBio:895332 Uniprot:Q22037
Length = 346
Score = 85 (35.0 bits), Expect = 0.00085, Sum P(2) = 0.00085
Identities = 20/57 (35%), Positives = 29/57 (50%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMS 58
+D +K RG GF+TF+ V+ M H + G TV RA P++D R +S
Sbjct: 56 RDPTTKRSRGFGFVTFSGKTEVDAAMKQRPHIIDGKTVDPKRAVPRDDKNRSESNVS 112
Score = 51 (23.0 bits), Expect = 0.00085, Sum P(2) = 0.00085
Identities = 12/48 (25%), Positives = 27/48 (56%)
Query: 93 RGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRIL--DVYVPKVRQ 138
R ES+ K+++V + ++ T + L YF+++G + ++ + K Q
Sbjct: 106 RSESNVST-KRLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQ 152
>UNIPROTKB|F1M5L3 [details] [associations]
symbol:F1M5L3 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC128353
EMBL:AC111733 IPI:IPI00358908 Ensembl:ENSRNOT00000041535
Uniprot:F1M5L3
Length = 364
Score = 77 (32.2 bits), Expect = 0.00089, Sum P(2) = 0.00089
Identities = 17/52 (32%), Positives = 27/52 (51%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRP 53
+D +K RG GF+T + + V+ M H++ G V RA +ED +P
Sbjct: 69 RDPQTKHSRGFGFVTSSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKP 120
Score = 63 (27.2 bits), Expect = 0.00089, Sum P(2) = 0.00089
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGR 127
KKIFVG + ++ +LR YF ++G+
Sbjct: 127 KKIFVGGIKEDTEEYNLRDYFEKYGK 152
>UNIPROTKB|F1M117 [details] [associations]
symbol:F1M117 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC128353
EMBL:AC111733 IPI:IPI00558412 Ensembl:ENSRNOT00000023321
Uniprot:F1M117
Length = 366
Score = 77 (32.2 bits), Expect = 0.00090, Sum P(2) = 0.00090
Identities = 17/52 (32%), Positives = 27/52 (51%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRP 53
+D +K RG GF+T + + V+ M H++ G V RA +ED +P
Sbjct: 69 RDPQTKHSRGFGFVTSSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKP 120
Score = 63 (27.2 bits), Expect = 0.00090, Sum P(2) = 0.00090
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGR 127
KKIFVG + ++ +LR YF ++G+
Sbjct: 127 KKIFVGGIKEDTEEYNLRDYFEKYGK 152
>DICTYBASE|DDB_G0275027 [details] [associations]
symbol:DDB_G0275027 "SRA stem-loop-interacting
RNA-binding protein, mitochondrial" species:44689 "Dictyostelium
discoideum" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0044351
"macropinocytosis" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0275027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000013 eggNOG:COG0724
ProtClustDB:CLSZ2430003 RefSeq:XP_643856.1
ProteinModelPortal:Q86I71 PRIDE:Q86I71 EnsemblProtists:DDB0167377
GeneID:8619907 KEGG:ddi:DDB_G0275027 InParanoid:Q86I71 OMA:QFESKES
Uniprot:Q86I71
Length = 91
Score = 84 (34.6 bits), Expect = 0.00093, P = 0.00093
Identities = 18/49 (36%), Positives = 30/49 (61%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFR 52
D+ +K +G GF+ F S +SV+N + +E+ G +VV+ A K DF+
Sbjct: 38 DRVTKRSKGFGFVQFESKESVQNAINSDNEINGRKLVVNEALAK--DFK 84
>ZFIN|ZDB-GENE-070424-97 [details] [associations]
symbol:hnrnpd "heterogeneous nuclear
ribonucleoprotein D" species:7955 "Danio rerio" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-070424-97 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104347
OMA:PNQNWNQ InterPro:IPR012956 Pfam:PF08143 EMBL:CR847788
IPI:IPI00512852 Ensembl:ENSDART00000101414
Ensembl:ENSDART00000123048 Uniprot:F1Q8A5
Length = 314
Score = 71 (30.1 bits), Expect = 0.00095, Sum P(2) = 0.00095
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP 134
KKIFVG L + E +R YF +G + + +P
Sbjct: 139 KKIFVGGLSPDTPEEKIREYFDAYGEVESIELP 171
Score = 69 (29.3 bits), Expect = 0.00095, Sum P(2) = 0.00095
Identities = 17/52 (32%), Positives = 27/52 (51%)
Query: 11 RGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
RG GF+ F A+SVE ++ H+L G + +A + PV ++ GG
Sbjct: 95 RGFGFVLFKEAESVEKVITQKEHKLNGKVIDPKKAKAMKTK-EPVKKIFVGG 145
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.320 0.138 0.408 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 139 139 0.00091 102 3 11 22 0.43 31
30 0.46 33
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 142
No. of states in DFA: 518 (55 KB)
Total size of DFA: 117 KB (2078 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 13.53u 0.21s 13.74t Elapsed: 00:00:01
Total cpu time: 13.54u 0.21s 13.75t Elapsed: 00:00:01
Start: Sat May 11 06:36:50 2013 End: Sat May 11 06:36:51 2013
WARNINGS ISSUED: 1