BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032483
(139 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q28F51|TADBP_XENTR TAR DNA-binding protein 43 OS=Xenopus tropicalis GN=tardbp PE=2
SV=1
Length = 409
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 30/34 (88%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK 135
+K+FVGR ++ +AE+LR++FS++G ++DV++PK
Sbjct: 191 RKVFVGRCTEDMSAEELRQFFSQYGEVVDVFIPK 224
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 104 IFVGRLPQEATAEDLRRYFSRFGRILDVYVPK 135
+ V LP + T +DL+ YFS FG ++ V V K
Sbjct: 107 LIVLGLPWKTTEQDLKDYFSTFGEVIMVQVKK 138
>sp|O94432|YHKF_SCHPO Uncharacterized RNA-binding protein C660.15 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBC660.15 PE=4 SV=1
Length = 474
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 48/131 (36%), Gaps = 48/131 (36%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
+D + RG GF+TF + V +M H L G + RA P+E+
Sbjct: 196 RDSTTGRSRGFGFLTFKNPKCVNEVMSKEHHLDGKIIDPKRAIPREE------------- 242
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
Q K+FVG +P + T E+ R +F
Sbjct: 243 -----------------------------------QEKTAKMFVGGVPGDCTEEEFRNFF 267
Query: 123 SRFGRILDVYV 133
++FGR+LD +
Sbjct: 268 NQFGRVLDATL 278
Score = 37.4 bits (85), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYV 133
K+F+G L E T + LR YF +FG +LD V
Sbjct: 164 KMFIGGLNWETTDDSLRDYFEQFGEVLDCTV 194
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Query: 1 MPKDQGSKAHRGIGFITFASADSVENLMVDTH-ELGGSTVVVDRATPKEDDFRPVGRMSH 59
M KD G RG GF+T+ + +VE M + + G V V RATPK R H
Sbjct: 280 MDKDTGRP--RGFGFVTYENESAVEATMSQPYITIHGKPVEVKRATPKASLRDSHDRHQH 337
Query: 60 GGYGAYNAY 68
G +G N Y
Sbjct: 338 GYHGNANPY 346
>sp|Q921F2|TADBP_MOUSE TAR DNA-binding protein 43 OS=Mus musculus GN=Tardbp PE=1 SV=1
Length = 414
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 29/34 (85%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK 135
+K+FVGR ++ TAE+L+++F ++G ++DV++PK
Sbjct: 191 RKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPK 224
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK 135
Q+ I +G LP + T +DL+ YFS FG +L V V K
Sbjct: 101 QKTSDLIVLG-LPWKTTEQDLKDYFSTFGEVLMVQVKK 137
>sp|Q5R5W2|TADBP_PONAB TAR DNA-binding protein 43 OS=Pongo abelii GN=TARDBP PE=2 SV=1
Length = 414
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 28/34 (82%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK 135
+K+FVGR ++ T ++LR +FS++G ++DV++PK
Sbjct: 191 RKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPK 224
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK 135
Q+ I +G LP + T +DL+ YFS FG +L V V K
Sbjct: 101 QKTSDLIVLG-LPWKTTEQDLKEYFSTFGEVLMVQVKK 137
>sp|Q13148|TADBP_HUMAN TAR DNA-binding protein 43 OS=Homo sapiens GN=TARDBP PE=1 SV=1
Length = 414
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 28/34 (82%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK 135
+K+FVGR ++ T ++LR +FS++G ++DV++PK
Sbjct: 191 RKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPK 224
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK 135
Q+ I +G LP + T +DL+ YFS FG +L V V K
Sbjct: 101 QKTSDLIVLG-LPWKTTEQDLKEYFSTFGEVLMVQVKK 137
>sp|Q5ZLN5|TADBP_CHICK TAR DNA-binding protein 43 OS=Gallus gallus GN=TARDBP PE=2 SV=1
Length = 414
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 30/34 (88%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK 135
+K+FVGR ++ TA++L+++F+++G ++DV++PK
Sbjct: 191 RKVFVGRCTEDMTADELQQFFAQYGEVVDVFIPK 224
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK 135
Q+ I +G LP + T +DL+ YFS FG +L V V K
Sbjct: 101 QKTSDLIVLG-LPWKTTEQDLKEYFSTFGEVLMVQVKK 137
>sp|Q9VVE5|MSIR6_DROME RNA-binding protein Musashi homolog Rbp6 OS=Drosophila melanogaster
GN=Rbp6 PE=2 SV=3
Length = 369
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 51/132 (38%), Gaps = 45/132 (34%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVD-THELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
KD ++ RG GF+TF+ +SV+ ++ THEL G V A P+
Sbjct: 62 KDPTTRRSRGFGFVTFSDPNSVDKVLTQGTHELDGKKVDPKVAFPRR------------- 108
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
A+ TR KKIFVG L T ED++ Y
Sbjct: 109 -----AHPKMVTR--------------------------TKKIFVGGLSAPTTLEDVKSY 137
Query: 122 FSRFGRILDVYV 133
F +FG I D +
Sbjct: 138 FEQFGPIEDAML 149
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 4 DQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKE 48
D+ + HRG GF+TF S D V+ + + HE+ V +A PKE
Sbjct: 152 DKQTNRHRGFGFVTFQSEDVVDKVCEIHFHEINNKMVECKKAQPKE 197
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK 135
K+F+G L + + E LR YF R+G I + V K
Sbjct: 30 KMFIGGLSWQTSPESLRDYFGRYGDISEAMVMK 62
>sp|P17130|ROA1_XENLA Heterogeneous nuclear ribonucleoproteins A1 homolog OS=Xenopus
laevis GN=hnrnpa1 PE=2 SV=1
Length = 365
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 51/127 (40%), Gaps = 43/127 (33%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D SK RG GF+T+ S D V+ M H++ G V RA +ED RP
Sbjct: 47 RDPNSKRSRGFGFVTYLSTDEVDAAMTARPHKVDGRVVEPKRAVSREDSSRP-------- 98
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
A+++ KKIFVG + ++ + LR Y
Sbjct: 99 ----GAHLTV------------------------------KKIFVGGIKEDTEEDHLREY 124
Query: 122 FSRFGRI 128
F ++G+I
Sbjct: 125 FEQYGKI 131
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVG-RMSHGG 61
D+GS RG F+TF DSV+ +++ H + V +A K++ G + GG
Sbjct: 139 DRGSGKKRGFAFVTFEDHDSVDKIVIQKYHTVNNHNSQVRKALSKQEMASVSGSQRERGG 198
Query: 62 YGAY 65
G Y
Sbjct: 199 SGNY 202
>sp|O04425|FCA_ARATH Flowering time control protein FCA OS=Arabidopsis thaliana GN=FCA
PE=1 SV=2
Length = 747
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 83 LYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDV 131
+ DH GSF G S + K+FVG +P+ AT E++R YF + G +L+V
Sbjct: 102 ISDH-GSFTGTDVSDRSSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEV 149
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 29/46 (63%), Gaps = 4/46 (8%)
Query: 91 YGRGESSQRIGK---KIFVGRLPQEATAEDLRRYFSRFGRILDVYV 133
Y GE +RIG K+FVG L ++AT +++ F +FG + DVY+
Sbjct: 198 YADGER-ERIGTLEFKLFVGSLNKQATEKEVEEIFLQFGHVEDVYL 242
>sp|Q32P51|RA1L2_HUMAN Heterogeneous nuclear ribonucleoprotein A1-like 2 OS=Homo sapiens
GN=HNRNPA1L2 PE=2 SV=2
Length = 320
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 52/127 (40%), Gaps = 43/127 (33%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D +K RG GF+T+A+ + V+ M T H++ G V RA +ED RP
Sbjct: 47 RDPNTKRSRGFGFVTYATVEEVDAAMNTTPHKVDGRVVEPKRAVSREDSQRP-------- 98
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
A+++ KKIFVG + ++ LR Y
Sbjct: 99 ----GAHLTV------------------------------KKIFVGGIKEDTEEHHLRDY 124
Query: 122 FSRFGRI 128
F ++G+I
Sbjct: 125 FEQYGKI 131
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKED 49
D+GS RG F+TF DSV+ +++ H + G V +A PK++
Sbjct: 139 DRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVRKALPKQE 185
>sp|Q8W034|RNP1_ARATH Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana
GN=RNP1 PE=1 SV=1
Length = 411
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 51/123 (41%), Gaps = 28/123 (22%)
Query: 11 RGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYIS 70
RG GF+ F+ ++ ++ + H + V V RA +E+ + G G N S
Sbjct: 47 RGFGFVIFSDPSVLDRVLQEKHSIDTREVDVKRAMSREE------QQVSGRTGNLNTSRS 100
Query: 71 AATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILD 130
+ G Y + KKIFVG LP T E+ R+YF +G + D
Sbjct: 101 SG---------------GDAYNKT-------KKIFVGGLPPTLTDEEFRQYFEVYGPVTD 138
Query: 131 VYV 133
V +
Sbjct: 139 VAI 141
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKE 48
DQ + RG GF++F S D+V++++ T H+L G V V RA PK+
Sbjct: 144 DQATNRPRGFGFVSFDSEDAVDSVLHKTFHDLSGKQVEVKRALPKD 189
>sp|Q6URK4|ROA3_RAT Heterogeneous nuclear ribonucleoprotein A3 OS=Rattus norvegicus
GN=Hnrnpa3 PE=1 SV=1
Length = 379
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 56/137 (40%), Gaps = 43/137 (31%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMV-DTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D +K RG GF+T++ + V+ M H++ G V RA +ED +P
Sbjct: 68 RDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKP-------- 119
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
A+++ KKIFVG + ++ +LR Y
Sbjct: 120 ----GAHLTV------------------------------KKIFVGGIKEDTEEYNLRDY 145
Query: 122 FSRFGRILDVYVPKVRQ 138
F ++G+I + V + RQ
Sbjct: 146 FEKYGKIETIEVMEDRQ 162
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKED 49
+D+ S RG F+TF D+V+ ++V H + G V +A K++
Sbjct: 159 EDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQE 206
>sp|Q8BG05|ROA3_MOUSE Heterogeneous nuclear ribonucleoprotein A3 OS=Mus musculus
GN=Hnrnpa3 PE=1 SV=1
Length = 379
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 56/137 (40%), Gaps = 43/137 (31%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMV-DTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D +K RG GF+T++ + V+ M H++ G V RA +ED +P
Sbjct: 68 RDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKP-------- 119
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
A+++ KKIFVG + ++ +LR Y
Sbjct: 120 ----GAHLTV------------------------------KKIFVGGIKEDTEEYNLRDY 145
Query: 122 FSRFGRILDVYVPKVRQ 138
F ++G+I + V + RQ
Sbjct: 146 FEKYGKIETIEVMEDRQ 162
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKED 49
+D+ S RG F+TF D+V+ ++V H + G V +A K++
Sbjct: 159 EDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQE 206
>sp|P51991|ROA3_HUMAN Heterogeneous nuclear ribonucleoprotein A3 OS=Homo sapiens
GN=HNRNPA3 PE=1 SV=2
Length = 378
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 56/137 (40%), Gaps = 43/137 (31%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMV-DTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D +K RG GF+T++ + V+ M H++ G V RA +ED +P
Sbjct: 68 RDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKP-------- 119
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
A+++ KKIFVG + ++ +LR Y
Sbjct: 120 ----GAHLTV------------------------------KKIFVGGIKEDTEEYNLRDY 145
Query: 122 FSRFGRILDVYVPKVRQ 138
F ++G+I + V + RQ
Sbjct: 146 FEKYGKIETIEVMEDRQ 162
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKED 49
+D+ S RG F+TF D+V+ ++V H + G V +A K++
Sbjct: 159 EDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQE 206
>sp|Q96DH6|MSI2H_HUMAN RNA-binding protein Musashi homolog 2 OS=Homo sapiens GN=MSI2 PE=1
SV=1
Length = 328
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 4 DQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRP 53
D+ + HRG GF+TF + D VE + + HE+ V +A PKE F P
Sbjct: 144 DKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPKEVMFPP 194
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 49/132 (37%), Gaps = 45/132 (34%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTH-ELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D +K RG GF+TFA SV+ ++ H EL T+ A P+ + V R
Sbjct: 54 RDPTTKRSRGFGFVTFADPASVDKVLGQPHHELDSKTIDPKVAFPRRAQPKMVTRT---- 109
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
KKIFVG L ED+++Y
Sbjct: 110 ----------------------------------------KKIFVGGLSANTVVEDVKQY 129
Query: 122 FSRFGRILDVYV 133
F +FG++ D +
Sbjct: 130 FEQFGKVEDAML 141
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 92 GRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYV 133
G SQ K+F+G L + + + LR YFS+FG I + V
Sbjct: 11 GSANDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMV 52
>sp|Q920Q6|MSI2H_MOUSE RNA-binding protein Musashi homolog 2 OS=Mus musculus GN=Msi2 PE=1
SV=1
Length = 346
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 4 DQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRP 53
D+ + HRG GF+TF + D VE + + HE+ V +A PKE F P
Sbjct: 144 DKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPKEVMFPP 194
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 49/132 (37%), Gaps = 45/132 (34%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTH-ELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D +K RG GF+TFA SV+ ++ H EL T+ A P+ + V R
Sbjct: 54 RDPTTKRSRGFGFVTFADPASVDKVLGQPHHELDSKTIDPKVAFPRRAQPKMVTRT---- 109
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
KKIFVG L ED+++Y
Sbjct: 110 ----------------------------------------KKIFVGGLSANTVVEDVKQY 129
Query: 122 FSRFGRILDVYV 133
F +FG++ D +
Sbjct: 130 FEQFGKVEDAML 141
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 92 GRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYV 133
G SQ K+F+G L + + + LR YFS+FG I + V
Sbjct: 11 GSANDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMV 52
>sp|Q61474|MSI1H_MOUSE RNA-binding protein Musashi homolog 1 OS=Mus musculus GN=Msi1 PE=1
SV=1
Length = 362
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 4 DQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKE 48
D+ + HRG GF+TF S D VE + + HE+ V +A PKE
Sbjct: 143 DKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQPKE 188
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 48/132 (36%), Gaps = 45/132 (34%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D +K RG GF+TF V+ ++ + HEL T+ A P+ + V R
Sbjct: 53 RDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVTRT---- 108
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
KKIFVG L T ED++ Y
Sbjct: 109 ----------------------------------------KKIFVGGLSVNTTVEDVKHY 128
Query: 122 FSRFGRILDVYV 133
F +FG++ D +
Sbjct: 129 FEQFGKVDDAML 140
Score = 33.1 bits (74), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYV 133
K+F+G L + T E LR YF +FG + + V
Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLV 51
>sp|Q8VXZ9|R47BP_ARATH Polyadenylate-binding protein RBP47B' OS=Arabidopsis thaliana
GN=RBP47B' PE=2 SV=1
Length = 425
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 52/129 (40%), Gaps = 16/129 (12%)
Query: 11 RGIGFITFASADSVENLMVDTHELGGST--VVVDRATPKEDDFRPVGRMSHGGYGAYNAY 68
+G GF+ FA M + + L ST + + ATPK++ G Y
Sbjct: 158 KGYGFVKFAEESERNRAMAEMNGLYCSTRPMRISAATPKKN------------VGVQQQY 205
Query: 69 ISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRI 128
++ A + P+ P Y S I V L Q T E+L++ FS+ G +
Sbjct: 206 VTKAVY--PVTVPSAVAAPVQAYVAPPESDVTCTTISVANLDQNVTEEELKKAFSQLGEV 263
Query: 129 LDVYVPKVR 137
+ V +P +
Sbjct: 264 IYVKIPATK 272
>sp|O43347|MSI1H_HUMAN RNA-binding protein Musashi homolog 1 OS=Homo sapiens GN=MSI1 PE=1
SV=1
Length = 362
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 4 DQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKE 48
D+ + HRG GF+TF S D VE + + HE+ V +A PKE
Sbjct: 143 DKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQPKE 188
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 49/132 (37%), Gaps = 45/132 (34%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D +K RG GF+TF V+ ++ + HEL T+ A P+ + V R
Sbjct: 53 RDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVTRT---- 108
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
KKIFVG L T ED+++Y
Sbjct: 109 ----------------------------------------KKIFVGGLSVNTTVEDVKQY 128
Query: 122 FSRFGRILDVYV 133
F +FG++ D +
Sbjct: 129 FEQFGKVDDAML 140
Score = 33.1 bits (74), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYV 133
K+F+G L + T E LR YF +FG + + V
Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLV 51
>sp|Q8K3P4|MSI1H_RAT RNA-binding protein Musashi homolog 1 OS=Rattus norvegicus GN=Msi1
PE=2 SV=1
Length = 362
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 4 DQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKE 48
D+ + HRG GF+TF S D VE + + HE+ V +A PKE
Sbjct: 143 DKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQPKE 188
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 48/132 (36%), Gaps = 45/132 (34%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D +K RG GF+TF V+ ++ + HEL T+ A P+ + V R
Sbjct: 53 RDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVTRT---- 108
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
KKIFVG L T ED++ Y
Sbjct: 109 ----------------------------------------KKIFVGGLSVNTTVEDVKHY 128
Query: 122 FSRFGRILDVYV 133
F +FG++ D +
Sbjct: 129 FEQFGKVDDAML 140
Score = 33.1 bits (74), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYV 133
K+F+G L + T E LR YF +FG + + V
Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLV 51
>sp|Q9LEB3|RBP47_NICPL Polyadenylate-binding protein RBP47 OS=Nicotiana plumbaginifolia
GN=RBP47 PE=1 SV=1
Length = 428
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 56/126 (44%), Gaps = 19/126 (15%)
Query: 11 RGIGFITFASADSVENLMVDTHELGGST--VVVDRATPKEDDFRPVGRMSHGGYGAYNAY 68
+G GF+ F M + + + S+ + + ATPK +P +H Y +
Sbjct: 219 KGYGFVRFGDESERSRAMTEMNGVYCSSRAMRIGVATPK----KPS---AHEQYSSQAVI 271
Query: 69 ISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRI 128
+S YA+ GA T +G IFVG L E T E+LR+ F++FG +
Sbjct: 272 LSGG--YASNGAAT--------HGSQSDGDSSNTTIFVGGLDSEVTDEELRQSFNQFGEV 321
Query: 129 LDVYVP 134
+ V +P
Sbjct: 322 VSVKIP 327
>sp|P09651|ROA1_HUMAN Heterogeneous nuclear ribonucleoprotein A1 OS=Homo sapiens
GN=HNRNPA1 PE=1 SV=5
Length = 372
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 51/127 (40%), Gaps = 43/127 (33%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D +K RG GF+T+A+ + V+ M H++ G V RA +ED RP
Sbjct: 47 RDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRP-------- 98
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
A+++ KKIFVG + ++ LR Y
Sbjct: 99 ----GAHLTV------------------------------KKIFVGGIKEDTEEHHLRDY 124
Query: 122 FSRFGRI 128
F ++G+I
Sbjct: 125 FEQYGKI 131
Score = 33.1 bits (74), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKED 49
D+GS RG F+TF DSV+ +++ H + G V +A K++
Sbjct: 139 DRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQE 185
>sp|Q5ZK88|PSPC1_CHICK Paraspeckle component 1 OS=Gallus gallus GN=PSPC1 PE=2 SV=1
Length = 523
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 28/49 (57%)
Query: 89 SFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKVR 137
SF GE S ++FVG LP + T ED +R F R+G +V++ + R
Sbjct: 68 SFLKPGEKSYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDR 116
>sp|P04256|ROA1_RAT Heterogeneous nuclear ribonucleoprotein A1 OS=Rattus norvegicus
GN=Hnrnpa1 PE=1 SV=3
Length = 320
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 51/127 (40%), Gaps = 43/127 (33%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D +K RG GF+T+A+ + V+ M H++ G V RA +ED RP
Sbjct: 47 RDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRP-------- 98
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
A+++ KKIFVG + ++ LR Y
Sbjct: 99 ----GAHLTV------------------------------KKIFVGGIKEDTEEHHLRDY 124
Query: 122 FSRFGRI 128
F ++G+I
Sbjct: 125 FEQYGKI 131
Score = 32.7 bits (73), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKED 49
D+GS RG F+TF DSV+ +++ H + G V +A K++
Sbjct: 139 DRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALCKQE 185
>sp|Q28521|ROA1_MACMU Heterogeneous nuclear ribonucleoprotein A1 OS=Macaca mulatta
GN=HNRNPA1 PE=2 SV=3
Length = 320
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 51/127 (40%), Gaps = 43/127 (33%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D +K RG GF+T+A+ + V+ M H++ G V RA +ED RP
Sbjct: 47 RDPNTKRSRGFGFVTYATVEKVDAAMNARPHKVDGRVVEPKRAVSREDSQRP-------- 98
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
A+++ KKIFVG + ++ LR Y
Sbjct: 99 ----GAHLTV------------------------------KKIFVGGIKEDTEEHHLRDY 124
Query: 122 FSRFGRI 128
F ++G+I
Sbjct: 125 FEQYGKI 131
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKED 49
D+GS RG F+TF +SV+ +++ H + G V +A K++
Sbjct: 139 DRGSGKKRGFAFVTFDDHNSVDKIVIQKYHTVNGHNCEVRKALSKQE 185
>sp|A5A6H4|ROA1_PANTR Heterogeneous nuclear ribonucleoprotein A1 OS=Pan troglodytes
GN=HNRNPA1 PE=2 SV=1
Length = 320
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 51/127 (40%), Gaps = 43/127 (33%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D +K RG GF+T+A+ + V+ M H++ G V RA +ED RP
Sbjct: 47 RDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRP-------- 98
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
A+++ KKIFVG + ++ LR Y
Sbjct: 99 ----GAHLTV------------------------------KKIFVGGIKEDTEEHHLRDY 124
Query: 122 FSRFGRI 128
F ++G+I
Sbjct: 125 FEQYGKI 131
Score = 32.7 bits (73), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKED 49
D+GS RG F+TF DSV+ +++ H + G V +A K++
Sbjct: 139 DRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQE 185
>sp|P49312|ROA1_MOUSE Heterogeneous nuclear ribonucleoprotein A1 OS=Mus musculus
GN=Hnrnpa1 PE=1 SV=2
Length = 320
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 51/127 (40%), Gaps = 43/127 (33%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D +K RG GF+T+A+ + V+ M H++ G V RA +ED RP
Sbjct: 47 RDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRP-------- 98
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
A+++ KKIFVG + ++ LR Y
Sbjct: 99 ----GAHLTV------------------------------KKIFVGGIKEDTEEHHLRDY 124
Query: 122 FSRFGRI 128
F ++G+I
Sbjct: 125 FEQYGKI 131
Score = 32.7 bits (73), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKED 49
D+GS RG F+TF DSV+ +++ H + G V +A K++
Sbjct: 139 DRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQE 185
>sp|P09867|ROA1_BOVIN Heterogeneous nuclear ribonucleoprotein A1 OS=Bos taurus GN=HNRNPA1
PE=1 SV=2
Length = 320
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 51/127 (40%), Gaps = 43/127 (33%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D +K RG GF+T+A+ + V+ M H++ G V RA +ED RP
Sbjct: 47 RDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRP-------- 98
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
A+++ KKIFVG + ++ LR Y
Sbjct: 99 ----GAHLTV------------------------------KKIFVGGIKEDTEEHHLRDY 124
Query: 122 FSRFGRI 128
F ++G+I
Sbjct: 125 FEQYGKI 131
Score = 32.7 bits (73), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKED 49
D+GS RG F+TF DSV+ +++ H + G V +A K++
Sbjct: 139 DRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQE 185
>sp|Q99020|ROAA_MOUSE Heterogeneous nuclear ribonucleoprotein A/B OS=Mus musculus
GN=Hnrnpab PE=1 SV=1
Length = 285
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 22/33 (66%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP 134
KKIFVG L EAT E +R YF +FG I + +P
Sbjct: 159 KKIFVGGLNPEATEEKIREYFGQFGEIEAIELP 191
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 22/31 (70%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYV 133
K+FVG L + + +DL+ YF++FG ++D +
Sbjct: 76 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTI 106
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 1 MPKDQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKE 48
+P D RG FITF D V+ ++ H + GS + A PKE
Sbjct: 190 LPIDPKLNKRRGFVFITFKEEDPVKKVLEKKFHTVSGSKCEIKVAQPKE 238
>sp|Q9V3G3|PPIE_DROME Peptidyl-prolyl cis-trans isomerase E OS=Drosophila melanogaster
GN=cyp33 PE=1 SV=1
Length = 300
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 9/61 (14%)
Query: 1 MPKDQGSKAHRGIGFITFA----SADSVENLMVDTHELGGSTVVVDRATP---KEDDFRP 53
MP D S+ HRG FI + +A +++N+ + EL G T+ V+ A P KED F+P
Sbjct: 37 MPADYESQRHRGFAFIEYEQSEDAAAAIDNM--NDSELCGRTIRVNLAKPVRVKEDSFKP 94
Query: 54 V 54
+
Sbjct: 95 I 95
>sp|P48809|RB27C_DROME Heterogeneous nuclear ribonucleoprotein 27C OS=Drosophila
melanogaster GN=Hrb27C PE=1 SV=2
Length = 421
Score = 38.9 bits (89), Expect = 0.009, Method: Composition-based stats.
Identities = 33/132 (25%), Positives = 53/132 (40%), Gaps = 45/132 (34%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVD-THELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
K+ S RG GF+TFA +V +++ + H L G T+ PK + R + + GG
Sbjct: 40 KNNESGRSRGFGFVTFADPTNVNHVLQNGPHTLDGRTI-----DPKPCNPRTLQKPKKGG 94
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
G K+F+G LP T DLR +
Sbjct: 95 ---------------------------------------GYKVFLGGLPSNVTETDLRTF 115
Query: 122 FSRFGRILDVYV 133
F+R+G++ +V +
Sbjct: 116 FNRYGKVTEVVI 127
Score = 37.7 bits (86), Expect = 0.021, Method: Composition-based stats.
Identities = 19/33 (57%), Positives = 22/33 (66%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK 135
K+FVG L E T E+L RYF RFG I+D V K
Sbjct: 8 KLFVGGLSWETTQENLSRYFCRFGDIIDCVVMK 40
Score = 31.6 bits (70), Expect = 1.6, Method: Composition-based stats.
Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 12/77 (15%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDTH-ELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
DQ K RG GF++F SVE++ + + L G V + +A P++ GG
Sbjct: 130 DQEKKKSRGFGFLSFEEESSVEHVTNERYINLNGKQVEIKKAEPRD---------GSGGQ 180
Query: 63 GAYNAYISAATRYAALG 79
+ N+ + A Y LG
Sbjct: 181 NSNNSTVGGA--YGKLG 195
>sp|Q8C7Q4|RBM4_MOUSE RNA-binding protein 4 OS=Mus musculus GN=Rbm4 PE=1 SV=1
Length = 361
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 25/33 (75%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK 135
K+F+G LP+EAT +++R F ++G++L+ + K
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIK 35
>sp|Q14103|HNRPD_HUMAN Heterogeneous nuclear ribonucleoprotein D0 OS=Homo sapiens
GN=HNRNPD PE=1 SV=1
Length = 355
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 26/38 (68%)
Query: 96 SSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYV 133
++QR K+F+G L + T +DL+ YFS+FG ++D +
Sbjct: 91 TAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTL 128
Score = 32.7 bits (73), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP 134
KKIFVG L + E +R YF FG + + +P
Sbjct: 182 KKIFVGGLSPDTPEEKIREYFGGFGEVESIELP 214
>sp|Q4R979|RBM4_MACFA RNA-binding protein 4 OS=Macaca fascicularis GN=RBM4 PE=2 SV=1
Length = 364
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 25/33 (75%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK 135
K+F+G LP+EAT +++R F ++G++L+ + K
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIK 35
>sp|Q9BWF3|RBM4_HUMAN RNA-binding protein 4 OS=Homo sapiens GN=RBM4 PE=1 SV=1
Length = 364
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 25/33 (75%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK 135
K+F+G LP+EAT +++R F ++G++L+ + K
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIK 35
>sp|Q3MHX3|RBM4_BOVIN RNA-binding protein 4 OS=Bos taurus GN=RBM4 PE=2 SV=1
Length = 362
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 25/33 (75%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK 135
K+F+G LP+EAT +++R F ++G++L+ + K
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIK 35
>sp|Q9BDY9|RBM4_RABIT RNA-binding protein 4 OS=Oryctolagus cuniculus GN=RBM4 PE=2 SV=1
Length = 359
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 25/33 (75%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK 135
K+F+G LP+EAT +++R F ++G++L+ + K
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIK 35
>sp|Q64LC9|RBM4B_RAT RNA-binding protein 4B OS=Rattus norvegicus GN=Rbm4b PE=2 SV=2
Length = 357
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 25/33 (75%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK 135
K+F+G LP+EAT +++R F ++G++L+ + K
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIK 35
>sp|Q8VE92|RBM4B_MOUSE RNA-binding protein 4B OS=Mus musculus GN=Rbm4b PE=1 SV=1
Length = 357
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 25/33 (75%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK 135
K+F+G LP+EAT +++R F ++G++L+ + K
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIK 35
>sp|Q9BQ04|RBM4B_HUMAN RNA-binding protein 4B OS=Homo sapiens GN=RBM4B PE=1 SV=1
Length = 359
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 25/33 (75%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK 135
K+F+G LP+EAT +++R F ++G++L+ + K
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIK 35
>sp|Q4KLH4|PSPC1_RAT Paraspeckle component 1 OS=Rattus norvegicus GN=Pspc1 PE=2 SV=1
Length = 522
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 28/49 (57%)
Query: 89 SFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKVR 137
SF GE + ++FVG LP + T ED +R F R+G +V++ + R
Sbjct: 68 SFLKPGEKTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDR 116
>sp|Q8WXF1|PSPC1_HUMAN Paraspeckle component 1 OS=Homo sapiens GN=PSPC1 PE=1 SV=1
Length = 523
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 28/49 (57%)
Query: 89 SFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKVR 137
SF GE + ++FVG LP + T ED +R F R+G +V++ + R
Sbjct: 69 SFLKPGEKTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDR 117
>sp|Q60668|HNRPD_MOUSE Heterogeneous nuclear ribonucleoprotein D0 OS=Mus musculus
GN=Hnrnpd PE=1 SV=2
Length = 355
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 25/36 (69%)
Query: 96 SSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDV 131
++QR K+F+G L + T +DL+ YFS+FG ++D
Sbjct: 91 AAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDC 126
Score = 32.7 bits (73), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP 134
KKIFVG L + E +R YF FG + + +P
Sbjct: 182 KKIFVGGLSPDTPEEKIREYFGGFGEVESIELP 214
>sp|Q8R326|PSPC1_MOUSE Paraspeckle component 1 OS=Mus musculus GN=Pspc1 PE=1 SV=1
Length = 523
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 28/49 (57%)
Query: 89 SFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKVR 137
SF GE + ++FVG LP + T ED +R F R+G +V++ + R
Sbjct: 68 SFLKPGEKTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDR 116
>sp|Q06AT9|RBM4B_PIG RNA-binding protein 4B OS=Sus scrofa GN=RBM4B PE=2 SV=1
Length = 359
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 25/33 (75%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK 135
K+F+G LP+EAT +++R F ++G++L+ + K
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIK 35
>sp|P51992|RO32_XENLA Heterogeneous nuclear ribonucleoprotein A3 homolog 2 OS=Xenopus
laevis PE=2 SV=1
Length = 385
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 54/137 (39%), Gaps = 43/137 (31%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D +K RG GF+T++ + V+ M H++ G V RA +ED RP
Sbjct: 60 RDPQTKRSRGFGFVTYSCVEEVDASMSARPHKVDGRVVEPKRAVSREDSARP-------- 111
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
A+++ KKIFVG + ++ LR Y
Sbjct: 112 ----GAHLTV------------------------------KKIFVGGIKEDTEEYHLRDY 137
Query: 122 FSRFGRILDVYVPKVRQ 138
F +G+I + V + RQ
Sbjct: 138 FEGYGKIETIEVMEDRQ 154
>sp|Q9JJ54|HNRPD_RAT Heterogeneous nuclear ribonucleoprotein D0 OS=Rattus norvegicus
GN=Hnrnpd PE=1 SV=1
Length = 353
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 25/36 (69%)
Query: 96 SSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDV 131
++QR K+F+G L + T +DL+ YFS+FG ++D
Sbjct: 89 TAQREEWKMFIGGLSWDTTKKDLKDYFSKFGDVVDC 124
Score = 32.7 bits (73), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP 134
KKIFVG L + E +R YF FG + + +P
Sbjct: 180 KKIFVGGLSPDTPEEKIREYFGGFGEVESIELP 212
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 1 MPKDQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKE 48
+P D + RG FITF + V+ +M H +G S + A KE
Sbjct: 211 LPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKE 259
>sp|Q9TTV2|ROA2_SAGOE Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Saguinus oedipus
GN=HNRNPA2B1 PE=1 SV=1
Length = 341
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 53/137 (38%), Gaps = 43/137 (31%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D SK RG GF+TF+S V+ M H + G V RA +E+ +P
Sbjct: 42 RDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKP-------- 93
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
A+++ KK+FVG + ++ LR Y
Sbjct: 94 ----GAHVTV------------------------------KKLFVGGIKEDTEEHHLRDY 119
Query: 122 FSRFGRILDVYVPKVRQ 138
F+ +G+I + + RQ
Sbjct: 120 FAEYGKIDTIEIITDRQ 136
Score = 32.7 bits (73), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 21/32 (65%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYV 133
+K+F+G L + T E LR Y+ ++G++ D V
Sbjct: 9 RKLFIGGLSFQTTEESLRNYYEQWGKLTDCVV 40
>sp|Q18409|RSP6_CAEEL Probable splicing factor, arginine/serine-rich 6 OS=Caenorhabditis
elegans GN=rsp-6 PE=3 SV=1
Length = 179
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 24/33 (72%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK 135
K++VG LP +AT+++L F RFGRI V+V +
Sbjct: 4 KVYVGGLPSDATSQELEEIFDRFGRIRKVWVAR 36
>sp|P48810|RB87F_DROME Heterogeneous nuclear ribonucleoprotein 87F OS=Drosophila
melanogaster GN=Hrb87F PE=2 SV=2
Length = 385
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 53/132 (40%), Gaps = 43/132 (32%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
KD +K RG GFIT++ + ++N H++ G TV RA P+++ P
Sbjct: 57 KDPKTKRSRGFGFITYSQSYMIDNAQNARPHKIDGRTVEPKRAVPRQEIDSP-------- 108
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
NA GA KK+FVG L + E LR Y
Sbjct: 109 ----NA-----------GATV-------------------KKLFVGGLRDDHDEECLREY 134
Query: 122 FSRFGRILDVYV 133
F FG+I+ V +
Sbjct: 135 FKDFGQIVSVNI 146
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVD-THELGGSTVVVDRATPKED 49
KD G K RG FI F D V+ +++ TH + T+ V +A K+D
Sbjct: 150 KDTGKK--RGFAFIEFDDYDPVDKIILQKTHSIKNKTLDVKKAIAKQD 195
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 22/34 (64%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK 135
+K+F+G L T + L+ +F ++G I+DV V K
Sbjct: 24 RKLFIGGLDYRTTDDGLKAHFEKWGNIVDVVVMK 57
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.138 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,287,338
Number of Sequences: 539616
Number of extensions: 2296184
Number of successful extensions: 6790
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 325
Number of HSP's successfully gapped in prelim test: 78
Number of HSP's that attempted gapping in prelim test: 6047
Number of HSP's gapped (non-prelim): 843
length of query: 139
length of database: 191,569,459
effective HSP length: 104
effective length of query: 35
effective length of database: 135,449,395
effective search space: 4740728825
effective search space used: 4740728825
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)