Query 032483
Match_columns 139
No_of_seqs 156 out of 1209
Neff 9.6
Searched_HMMs 29240
Date Tue Mar 26 00:11:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032483.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032483hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1l3k_A Heterogeneous nuclear r 99.9 2.4E-23 8.2E-28 141.5 10.1 96 1-138 45-141 (196)
2 2cjk_A Nuclear polyadenylated 99.9 9.4E-24 3.2E-28 140.2 5.4 90 1-138 35-124 (167)
3 1b7f_A Protein (SXL-lethal pro 99.9 6E-22 2.1E-26 131.5 11.1 90 1-138 35-126 (168)
4 1fxl_A Paraneoplastic encephal 99.9 9.8E-22 3.3E-26 130.1 10.3 90 1-138 34-125 (167)
5 4f02_A Polyadenylate-binding p 99.9 3.3E-22 1.1E-26 138.3 7.3 92 1-138 47-140 (213)
6 2qfj_A FBP-interacting repress 99.8 1.4E-20 4.7E-25 129.6 11.0 101 1-138 60-162 (216)
7 2yh0_A Splicing factor U2AF 65 99.8 1.9E-20 6.5E-25 127.3 11.3 107 4-138 44-151 (198)
8 3md3_A Nuclear and cytoplasmic 99.8 2.4E-20 8.1E-25 123.3 11.2 90 2-138 33-124 (166)
9 2g4b_A Splicing factor U2AF 65 99.8 8.9E-21 3E-25 126.3 8.7 86 5-138 45-131 (172)
10 1fje_B Nucleolin RBD12, protei 99.8 3.5E-20 1.2E-24 123.9 8.3 85 1-131 44-129 (175)
11 3smz_A Protein raver-1, ribonu 99.8 6.7E-20 2.3E-24 131.3 9.3 92 1-137 127-221 (284)
12 3nmr_A Cugbp ELAV-like family 99.8 5.6E-20 1.9E-24 122.5 8.2 91 1-138 35-132 (175)
13 3pgw_A U1-A; protein-RNA compl 99.8 1.2E-18 4.1E-23 124.7 15.5 43 6-48 47-91 (282)
14 2ghp_A U4/U6 snRNA-associated 99.8 2.6E-19 8.9E-24 128.7 9.6 96 1-138 150-248 (292)
15 3tyt_A Heterogeneous nuclear r 99.8 2.7E-18 9.2E-23 118.2 11.3 117 10-137 41-161 (205)
16 2kn4_A Immunoglobulin G-bindin 99.8 1E-18 3.5E-23 115.5 7.0 96 8-139 10-108 (158)
17 3sde_A Paraspeckle component 1 99.7 6.3E-18 2.2E-22 120.1 9.6 76 8-137 55-132 (261)
18 3smz_A Protein raver-1, ribonu 99.7 9.4E-18 3.2E-22 120.1 10.3 77 8-138 54-132 (284)
19 1qm9_A Polypyrimidine tract-bi 99.7 1.6E-17 5.5E-22 113.1 10.8 112 11-136 41-156 (198)
20 2adc_A Polypyrimidine tract-bi 99.7 2.6E-17 8.8E-22 114.8 11.3 111 11-135 72-186 (229)
21 2ghp_A U4/U6 snRNA-associated 99.7 2.9E-17 9.8E-22 118.0 8.0 79 2-137 74-154 (292)
22 2i2y_A Fusion protein consists 99.7 1.6E-16 5.4E-21 104.2 6.8 97 7-136 9-108 (150)
23 4f25_A Polyadenylate-binding p 99.6 1.6E-16 5.3E-21 99.9 3.6 46 2-49 38-85 (115)
24 2lxi_A RNA-binding protein 10; 99.5 4.5E-14 1.5E-18 85.1 6.2 49 1-49 34-85 (91)
25 2lkz_A RNA-binding protein 5; 99.4 1.6E-13 5.3E-18 83.4 5.5 46 1-46 43-94 (95)
26 4fxv_A ELAV-like protein 1; RN 99.4 1.6E-13 5.6E-18 83.9 4.3 46 1-46 51-98 (99)
27 2cqg_A TDP-43, TAR DNA-binding 99.4 4.5E-13 1.5E-17 82.2 5.7 51 1-51 47-97 (103)
28 4fxv_A ELAV-like protein 1; RN 99.4 7.7E-13 2.6E-17 80.9 5.9 40 100-139 18-57 (99)
29 3p5t_L Cleavage and polyadenyl 99.4 1.9E-13 6.3E-18 82.1 2.2 48 1-48 35-84 (90)
30 2dgs_A DAZ-associated protein 99.3 3.2E-12 1.1E-16 77.8 6.8 49 1-49 42-91 (99)
31 3s8s_A Histone-lysine N-methyl 99.3 9.4E-13 3.2E-17 82.0 4.4 47 1-47 38-86 (110)
32 1sjq_A Polypyrimidine tract-bi 99.3 1.5E-12 5.2E-17 80.3 5.1 39 99-137 14-52 (105)
33 2rs2_A Musashi-1, RNA-binding 99.3 3.2E-12 1.1E-16 79.3 6.5 49 1-49 57-106 (109)
34 1whw_A Hypothetical protein ri 99.3 7.6E-12 2.6E-16 76.1 8.0 49 1-49 40-90 (99)
35 2lea_A Serine/arginine-rich sp 99.3 1.4E-12 4.7E-17 84.1 4.8 41 98-138 44-84 (135)
36 3ns6_A Eukaryotic translation 99.3 5.2E-13 1.8E-17 81.7 2.7 47 1-47 44-93 (100)
37 1x5t_A Splicing factor 3B subu 99.3 4.8E-12 1.6E-16 76.5 6.6 49 1-49 38-88 (96)
38 1x4h_A RNA-binding protein 28; 99.3 7.6E-12 2.6E-16 77.5 7.6 50 1-50 47-104 (111)
39 3s8s_A Histone-lysine N-methyl 99.3 4.6E-12 1.6E-16 78.9 6.2 41 99-139 4-44 (110)
40 3md1_A Nuclear and cytoplasmic 99.3 2.8E-12 9.4E-17 75.5 4.7 48 1-48 33-82 (83)
41 1x4b_A Heterogeneous nuclear r 99.3 4.8E-12 1.6E-16 79.2 5.8 50 1-50 59-109 (116)
42 2hvz_A Splicing factor, argini 99.3 3.1E-12 1E-16 78.2 4.8 39 10-48 36-76 (101)
43 2cqd_A RNA-binding region cont 99.3 1.3E-11 4.6E-16 77.1 7.8 42 98-139 14-55 (116)
44 2dnm_A SRP46 splicing factor; 99.3 9.2E-12 3.2E-16 76.3 6.9 41 98-138 10-50 (103)
45 4f25_A Polyadenylate-binding p 99.3 3.5E-12 1.2E-16 79.9 5.1 38 101-138 5-42 (115)
46 2mss_A Protein (musashi1); RNA 99.3 3E-12 1E-16 74.0 4.4 44 1-44 31-75 (75)
47 2dng_A Eukaryotic translation 99.3 4.1E-12 1.4E-16 77.9 5.2 49 1-49 46-95 (103)
48 2fc8_A NCL protein; structure 99.3 3.9E-12 1.3E-16 77.8 5.0 49 1-49 44-94 (102)
49 2e5h_A Zinc finger CCHC-type a 99.3 1.3E-11 4.4E-16 74.3 7.1 41 98-138 13-53 (94)
50 3s7r_A Heterogeneous nuclear r 99.3 8E-12 2.7E-16 74.2 6.2 42 98-139 8-49 (87)
51 2dgo_A Cytotoxic granule-assoc 99.3 1.1E-11 3.6E-16 77.4 7.0 50 1-50 47-98 (115)
52 2cq1_A PTB-like protein L; RRM 99.3 9.7E-12 3.3E-16 76.3 6.6 40 98-137 12-51 (101)
53 2cqb_A Peptidyl-prolyl CIS-tra 99.3 1E-11 3.5E-16 75.9 6.7 49 1-49 44-94 (102)
54 1x5u_A Splicing factor 3B subu 99.3 1.1E-11 3.8E-16 76.1 6.9 49 1-49 47-97 (105)
55 2dgs_A DAZ-associated protein 99.3 1.1E-11 3.8E-16 75.3 6.8 41 98-138 7-47 (99)
56 1wi8_A EIF-4B, eukaryotic tran 99.3 1.2E-11 4.2E-16 75.9 7.0 49 1-49 46-96 (104)
57 2x1f_A MRNA 3'-END-processing 99.3 8.9E-12 3E-16 75.4 6.2 49 1-49 34-84 (96)
58 2cqd_A RNA-binding region cont 99.3 2E-11 6.9E-16 76.3 8.1 49 1-49 49-98 (116)
59 2dhg_A TRNA selenocysteine ass 99.3 3.7E-12 1.3E-16 78.1 4.6 51 1-52 42-95 (104)
60 2dnz_A Probable RNA-binding pr 99.3 9.4E-12 3.2E-16 75.0 6.3 49 1-49 37-87 (95)
61 2cpe_A RNA-binding protein EWS 99.3 1.1E-11 3.8E-16 77.1 6.7 49 1-49 55-105 (113)
62 2cqg_A TDP-43, TAR DNA-binding 99.3 1.6E-11 5.5E-16 75.2 7.3 41 98-138 12-52 (103)
63 3r27_A HnRNP L, heterogeneous 99.3 9.5E-12 3.3E-16 76.0 6.1 40 98-137 18-57 (100)
64 1x4d_A Matrin 3; structural ge 99.3 6.4E-12 2.2E-16 77.2 5.3 40 99-138 13-53 (102)
65 1x4c_A Splicing factor, argini 99.3 1.6E-11 5.3E-16 76.0 7.2 39 98-136 12-50 (108)
66 1wex_A Hypothetical protein (r 99.3 1.8E-11 6.2E-16 75.4 7.3 40 98-137 12-51 (104)
67 2ad9_A Polypyrimidine tract-bi 99.3 9.1E-12 3.1E-16 78.5 6.0 40 98-137 28-67 (119)
68 2lxi_A RNA-binding protein 10; 99.3 1.4E-12 4.8E-17 78.5 2.1 39 101-139 1-40 (91)
69 2cqc_A Arginine/serine-rich sp 99.3 1.8E-11 6.1E-16 73.8 7.1 42 98-139 12-53 (95)
70 2cpz_A CUG triplet repeat RNA- 99.3 2.4E-11 8.2E-16 75.8 7.9 41 98-138 22-62 (115)
71 1iqt_A AUF1, heterogeneous nuc 99.3 3.7E-12 1.3E-16 73.6 3.8 44 1-44 31-75 (75)
72 2dis_A Unnamed protein product 99.3 2.7E-11 9.2E-16 74.8 8.0 48 3-50 44-95 (109)
73 3bs9_A Nucleolysin TIA-1 isofo 99.3 4.1E-12 1.4E-16 75.4 4.0 47 1-47 38-86 (87)
74 2dh8_A DAZ-associated protein 99.3 3.6E-12 1.2E-16 78.3 3.8 49 1-49 48-97 (105)
75 2dnm_A SRP46 splicing factor; 99.3 1E-11 3.4E-16 76.1 5.8 48 1-48 45-94 (103)
76 2dh8_A DAZ-associated protein 99.3 1.6E-11 5.4E-16 75.5 6.7 42 98-139 13-54 (105)
77 2m2b_A RNA-binding protein 10; 99.3 7.1E-12 2.4E-16 80.2 5.2 48 1-49 57-110 (131)
78 3d2w_A TAR DNA-binding protein 99.3 7.4E-12 2.5E-16 75.0 4.9 39 98-136 8-46 (89)
79 3s7r_A Heterogeneous nuclear r 99.2 5E-12 1.7E-16 75.1 4.1 44 1-44 43-87 (87)
80 1x5u_A Splicing factor 3B subu 99.2 2.3E-11 7.9E-16 74.7 7.2 41 98-138 12-52 (105)
81 2cq0_A Eukaryotic translation 99.2 9.1E-12 3.1E-16 76.3 5.3 49 1-49 47-97 (103)
82 2j76_E EIF-4B, EIF4B, eukaryot 99.2 8.3E-12 2.8E-16 76.2 5.1 48 1-48 50-99 (100)
83 1fj7_A Nucleolin RBD1, protein 99.2 4.5E-12 1.5E-16 77.4 3.8 48 1-48 48-96 (101)
84 2cq3_A RNA-binding protein 9; 99.2 3.1E-11 1.1E-15 73.9 7.6 41 98-138 12-52 (103)
85 1x4h_A RNA-binding protein 28; 99.2 2.3E-11 7.9E-16 75.3 7.1 42 98-139 12-53 (111)
86 1s79_A Lupus LA protein; RRM, 99.2 1.2E-11 4E-16 76.1 5.6 40 99-138 9-48 (103)
87 3n9u_C Cleavage and polyadenyl 99.2 3.3E-12 1.1E-16 84.2 3.2 47 1-47 89-137 (156)
88 1x5s_A Cold-inducible RNA-bind 99.2 1.3E-11 4.6E-16 75.3 5.6 49 1-49 44-94 (102)
89 2lkz_A RNA-binding protein 5; 99.2 6.7E-12 2.3E-16 76.1 4.1 42 98-139 6-49 (95)
90 2dgp_A Bruno-like 4, RNA bindi 99.2 1.4E-11 4.7E-16 75.8 5.5 41 98-138 10-50 (106)
91 2khc_A Testis-specific RNP-typ 99.2 8.1E-11 2.8E-15 73.7 9.1 41 98-138 37-77 (118)
92 2dgo_A Cytotoxic granule-assoc 99.2 3.5E-11 1.2E-15 75.1 7.3 41 98-138 12-52 (115)
93 1wez_A HnRNP H', FTP-3, hetero 99.2 6.5E-12 2.2E-16 77.1 3.8 47 1-48 46-93 (102)
94 2cpz_A CUG triplet repeat RNA- 99.2 1.1E-11 3.7E-16 77.5 4.9 49 1-49 57-107 (115)
95 2cpy_A RNA-binding protein 12; 99.2 5.5E-12 1.9E-16 78.8 3.5 46 1-47 48-94 (114)
96 2cqi_A Nucleolysin TIAR; RNA r 99.2 3.4E-11 1.2E-15 73.7 7.0 41 98-138 12-52 (103)
97 1oo0_B CG8781-PA, drosophila Y 99.2 1.9E-11 6.4E-16 75.7 5.6 48 1-48 58-107 (110)
98 4f02_A Polyadenylate-binding p 99.2 1.5E-11 5.2E-16 84.6 5.7 41 99-139 13-53 (213)
99 1wg5_A Heterogeneous nuclear r 99.2 1.7E-11 5.8E-16 75.4 5.3 47 1-48 48-95 (104)
100 2cq0_A Eukaryotic translation 99.2 2.4E-11 8.2E-16 74.4 6.0 41 98-138 12-52 (103)
101 1p27_B RNA-binding protein 8A; 99.2 7.9E-12 2.7E-16 76.9 3.8 48 1-48 55-104 (106)
102 2cph_A RNA binding motif prote 99.2 4E-11 1.4E-15 73.8 7.0 39 98-136 12-50 (107)
103 2fy1_A RNA-binding motif prote 99.2 3.1E-11 1.1E-15 75.7 6.6 47 1-48 39-87 (116)
104 2m2b_A RNA-binding protein 10; 99.2 2E-11 7E-16 78.0 5.8 42 98-139 20-63 (131)
105 2dnn_A RNA-binding protein 12; 99.2 1.3E-11 4.6E-16 76.6 4.8 46 1-47 47-93 (109)
106 1x4e_A RNA binding motif, sing 99.2 1.5E-11 5.1E-16 72.7 4.8 40 99-138 3-42 (85)
107 1u6f_A Tcubp1, RNA-binding pro 99.2 2E-11 6.8E-16 78.6 5.7 49 1-49 74-124 (139)
108 1wi8_A EIF-4B, eukaryotic tran 99.2 4.3E-11 1.5E-15 73.4 7.0 41 98-139 12-52 (104)
109 2dgw_A Probable RNA-binding pr 99.2 1.4E-11 4.8E-16 73.8 4.6 47 1-48 41-88 (91)
110 2dgp_A Bruno-like 4, RNA bindi 99.2 4.8E-11 1.7E-15 73.3 7.1 49 1-49 45-98 (106)
111 2kn4_A Immunoglobulin G-bindin 99.2 4.3E-11 1.5E-15 78.6 7.2 48 1-48 102-151 (158)
112 2do4_A Squamous cell carcinoma 99.2 7E-11 2.4E-15 71.9 7.7 40 98-137 14-53 (100)
113 2ywk_A Putative RNA-binding pr 99.2 2.7E-11 9.2E-16 73.0 5.7 41 98-138 13-53 (95)
114 2do4_A Squamous cell carcinoma 99.2 2.1E-11 7.2E-16 74.2 5.2 47 1-48 49-97 (100)
115 2jrs_A RNA-binding protein 39; 99.2 7.7E-12 2.6E-16 77.5 3.3 48 1-48 58-107 (108)
116 2cph_A RNA binding motif prote 99.2 5.5E-11 1.9E-15 73.1 7.1 49 1-49 47-99 (107)
117 2dnz_A Probable RNA-binding pr 99.2 3.7E-11 1.3E-15 72.4 6.2 40 99-138 3-42 (95)
118 3mdf_A Peptidyl-prolyl CIS-tra 99.2 2.8E-11 9.6E-16 71.4 5.6 40 99-138 5-44 (85)
119 1x4a_A Splicing factor, argini 99.2 1E-10 3.5E-15 72.3 8.4 40 98-137 19-58 (109)
120 2la6_A RNA-binding protein FUS 99.2 1E-11 3.5E-16 75.6 3.6 44 1-44 53-98 (99)
121 2dgx_A KIAA0430 protein; RRM d 99.2 3.4E-11 1.2E-15 72.9 5.9 41 99-139 7-51 (96)
122 3md1_A Nuclear and cytoplasmic 99.2 3E-11 1E-15 71.0 5.5 37 102-138 2-38 (83)
123 2e5h_A Zinc finger CCHC-type a 99.2 2.8E-11 9.5E-16 72.8 5.5 44 1-44 48-93 (94)
124 1whw_A Hypothetical protein ri 99.2 3.7E-11 1.3E-15 73.0 6.0 40 99-138 6-45 (99)
125 3bs9_A Nucleolysin TIA-1 isofo 99.2 3.2E-11 1.1E-15 71.5 5.6 40 99-138 4-43 (87)
126 2dnh_A Bruno-like 5, RNA bindi 99.2 8.1E-11 2.8E-15 72.2 7.5 39 99-137 13-51 (105)
127 3mdf_A Peptidyl-prolyl CIS-tra 99.2 1.8E-11 6.3E-16 72.2 4.4 44 1-44 39-84 (85)
128 2div_A TRNA selenocysteine ass 99.2 2.8E-11 9.6E-16 73.5 5.4 41 99-139 7-48 (99)
129 1wg5_A Heterogeneous nuclear r 99.2 6.3E-11 2.2E-15 72.8 6.9 40 98-137 12-52 (104)
130 1x5s_A Cold-inducible RNA-bind 99.2 3.7E-11 1.3E-15 73.4 5.8 41 98-138 9-49 (102)
131 2kxn_B Transformer-2 protein h 99.2 2.2E-11 7.4E-16 77.8 4.9 48 1-48 78-127 (129)
132 2e44_A Insulin-like growth fac 99.2 4.2E-11 1.4E-15 72.3 6.0 41 99-139 13-54 (96)
133 2rs2_A Musashi-1, RNA-binding 99.2 3.1E-11 1E-15 74.9 5.3 41 98-138 22-62 (109)
134 2ki2_A SS-DNA binding protein 99.2 1.2E-11 4E-16 73.9 3.3 48 1-49 33-82 (90)
135 2fc9_A NCL protein; structure 99.2 8.3E-11 2.8E-15 71.7 7.2 47 1-48 44-92 (101)
136 2hgm_A HNRPF protein, heteroge 99.2 5.4E-12 1.8E-16 80.4 1.8 46 1-47 75-121 (126)
137 2cqb_A Peptidyl-prolyl CIS-tra 99.2 3.4E-11 1.1E-15 73.5 5.3 40 99-138 10-49 (102)
138 2cqc_A Arginine/serine-rich sp 99.2 2.1E-11 7.2E-16 73.4 4.3 45 1-45 47-93 (95)
139 2x1f_A MRNA 3'-END-processing 99.2 3.9E-11 1.3E-15 72.5 5.5 38 101-138 2-39 (96)
140 2do0_A HnRNP M, heterogeneous 99.2 9E-11 3.1E-15 73.0 7.3 40 98-137 12-51 (114)
141 1uaw_A Mouse-musashi-1; RNP-ty 99.2 1.1E-11 3.7E-16 71.9 2.9 44 1-44 32-76 (77)
142 2cqp_A RNA-binding protein 12; 99.2 2.1E-11 7.2E-16 73.9 4.2 46 2-47 48-95 (98)
143 3ucg_A Polyadenylate-binding p 99.2 2.1E-11 7.2E-16 72.6 4.1 47 1-47 38-85 (89)
144 1s79_A Lupus LA protein; RRM, 99.2 1.6E-11 5.6E-16 75.5 3.7 44 1-45 43-87 (103)
145 1p27_B RNA-binding protein 8A; 99.2 5.8E-11 2E-15 73.0 6.2 42 98-139 20-61 (106)
146 2dng_A Eukaryotic translation 99.2 1.1E-10 3.7E-15 71.4 7.3 41 98-139 12-52 (103)
147 2kxn_B Transformer-2 protein h 99.2 6.4E-11 2.2E-15 75.6 6.4 42 98-139 43-84 (129)
148 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.2 1.4E-10 4.7E-15 74.5 8.0 41 98-138 60-100 (140)
149 2cq4_A RNA binding motif prote 99.2 6.8E-11 2.3E-15 73.7 6.4 41 99-139 23-63 (114)
150 3ex7_B RNA-binding protein 8A; 99.2 4.3E-11 1.5E-15 75.8 5.5 49 1-49 54-104 (126)
151 1wf0_A TDP-43, TAR DNA-binding 99.2 2.8E-11 9.6E-16 72.0 4.4 37 100-136 4-40 (88)
152 2cjk_A Nuclear polyadenylated 99.2 4.2E-11 1.4E-15 78.8 5.7 47 1-47 119-166 (167)
153 1uaw_A Mouse-musashi-1; RNP-ty 99.2 1.9E-11 6.6E-16 70.8 3.5 37 102-138 1-37 (77)
154 1x4f_A Matrin 3; structural ge 99.2 4.5E-11 1.5E-15 74.5 5.4 40 98-137 22-62 (112)
155 4a8x_A RNA-binding protein wit 99.2 4.1E-11 1.4E-15 71.1 4.9 38 101-138 4-41 (88)
156 2la6_A RNA-binding protein FUS 99.2 9.8E-11 3.4E-15 71.1 6.7 42 98-139 10-59 (99)
157 3lqv_A PRE-mRNA branch site pr 99.2 8.5E-12 2.9E-16 77.9 1.9 41 7-47 43-85 (115)
158 3ucg_A Polyadenylate-binding p 99.2 6.4E-11 2.2E-15 70.4 5.6 38 101-138 6-43 (89)
159 2ytc_A PRE-mRNA-splicing facto 99.2 1.1E-10 3.8E-15 68.8 6.6 40 98-137 9-48 (85)
160 1oo0_B CG8781-PA, drosophila Y 99.1 6.9E-11 2.4E-15 73.1 5.9 41 98-138 23-63 (110)
161 2dgt_A RNA-binding protein 30; 99.1 7.1E-11 2.4E-15 70.8 5.7 39 98-136 7-45 (92)
162 1why_A Hypothetical protein ri 99.1 1.6E-10 5.6E-15 69.9 7.4 39 99-137 15-53 (97)
163 2ek1_A RNA-binding protein 12; 99.1 2.3E-11 8E-16 73.3 3.6 44 2-45 48-93 (95)
164 1p1t_A Cleavage stimulation fa 99.1 1.8E-11 6E-16 75.0 3.0 48 1-48 40-89 (104)
165 3ns6_A Eukaryotic translation 99.1 2.1E-11 7.2E-16 74.4 3.2 39 101-139 6-50 (100)
166 2jwn_A Embryonic polyadenylate 99.1 5.4E-11 1.9E-15 75.1 5.1 47 1-47 68-115 (124)
167 3p5t_L Cleavage and polyadenyl 99.1 3.4E-11 1.2E-15 72.0 4.0 38 102-139 2-41 (90)
168 2cpf_A RNA binding motif prote 99.1 6.3E-11 2.2E-15 71.8 5.2 39 100-138 4-42 (98)
169 2d9p_A Polyadenylate-binding p 99.1 1.1E-10 3.7E-15 71.4 6.3 39 98-136 12-50 (103)
170 3ex7_B RNA-binding protein 8A; 99.1 9.1E-11 3.1E-15 74.3 6.0 41 98-138 19-59 (126)
171 2mss_A Protein (musashi1); RNA 99.1 3.5E-11 1.2E-15 69.4 3.7 36 103-138 1-36 (75)
172 2jrs_A RNA-binding protein 39; 99.1 2E-10 6.7E-15 71.1 7.3 41 98-138 23-63 (108)
173 1x5t_A Splicing factor 3B subu 99.1 4E-11 1.4E-15 72.4 4.0 40 99-138 3-43 (96)
174 3ulh_A THO complex subunit 4; 99.1 1.1E-10 3.9E-15 71.8 6.0 40 98-137 26-65 (107)
175 2hgl_A HNRPF protein, heteroge 99.1 1.3E-11 4.5E-16 79.6 1.8 46 1-47 79-125 (136)
176 2dgu_A Heterogeneous nuclear r 99.1 1.1E-10 3.6E-15 71.5 5.7 39 98-136 8-46 (103)
177 2cpf_A RNA binding motif prote 99.1 3.8E-11 1.3E-15 72.8 3.7 43 7-49 46-90 (98)
178 2dhg_A TRNA selenocysteine ass 99.1 1.3E-10 4.3E-15 71.2 6.0 40 98-137 6-46 (104)
179 3lqv_A PRE-mRNA branch site pr 99.1 1.3E-10 4.6E-15 72.4 6.2 40 99-138 6-45 (115)
180 1wez_A HnRNP H', FTP-3, hetero 99.1 1E-10 3.5E-15 71.7 5.6 39 98-137 12-50 (102)
181 1x4b_A Heterogeneous nuclear r 99.1 7E-11 2.4E-15 73.8 4.9 40 99-138 25-64 (116)
182 2d9p_A Polyadenylate-binding p 99.1 8.5E-11 2.9E-15 71.9 5.2 44 7-50 51-96 (103)
183 2cpi_A CCR4-NOT transcription 99.1 8.7E-11 3E-15 73.0 5.2 47 2-48 51-102 (111)
184 2lmi_A GRSF-1, G-rich sequence 99.1 2.7E-11 9.3E-16 74.8 2.8 46 1-47 46-92 (107)
185 2cpj_A Non-POU domain-containi 99.1 1.6E-10 5.6E-15 70.1 6.2 40 98-137 12-51 (99)
186 2kt5_A RNA and export factor-b 99.1 1.5E-10 5.1E-15 73.2 6.3 48 1-49 67-116 (124)
187 2lea_A Serine/arginine-rich sp 99.1 8.7E-11 3E-15 75.5 5.2 48 1-48 79-128 (135)
188 2cq4_A RNA binding motif prote 99.1 5.6E-11 1.9E-15 74.0 4.1 47 1-47 57-104 (114)
189 2div_A TRNA selenocysteine ass 99.1 3.8E-11 1.3E-15 72.9 3.3 47 1-47 42-94 (99)
190 2khc_A Testis-specific RNP-typ 99.1 4.8E-11 1.6E-15 74.7 3.8 44 1-44 72-117 (118)
191 1iqt_A AUF1, heterogeneous nuc 99.1 3.3E-11 1.1E-15 69.5 2.8 36 103-138 1-36 (75)
192 2db1_A Heterogeneous nuclear r 99.1 1.1E-10 3.7E-15 73.4 5.4 41 98-138 14-57 (118)
193 2cpy_A RNA-binding protein 12; 99.1 1.1E-10 3.9E-15 72.8 5.4 40 98-137 12-52 (114)
194 2dgv_A HnRNP M, heterogeneous 99.1 1.9E-10 6.4E-15 68.8 6.2 38 99-136 6-43 (92)
195 1u6f_A Tcubp1, RNA-binding pro 99.1 2E-10 6.8E-15 73.9 6.7 42 98-139 39-80 (139)
196 2dnh_A Bruno-like 5, RNA bindi 99.1 9.1E-11 3.1E-15 71.9 4.9 48 1-49 47-99 (105)
197 1x5o_A RNA binding motif, sing 99.1 4E-10 1.4E-14 70.1 7.8 39 99-137 23-61 (114)
198 2hgn_A Heterogeneous nuclear r 99.1 4.5E-11 1.6E-15 77.3 3.6 40 98-138 43-82 (139)
199 2db1_A Heterogeneous nuclear r 99.1 2.2E-11 7.7E-16 76.5 2.1 46 1-47 52-98 (118)
200 2xs2_A Deleted in azoospermia- 99.1 8.9E-11 3.1E-15 71.7 4.7 39 99-137 7-45 (102)
201 2dnl_A Cytoplasmic polyadenyla 99.1 9.2E-11 3.2E-15 73.2 4.9 39 99-138 6-44 (114)
202 2cpe_A RNA-binding protein EWS 99.1 1.6E-10 5.3E-15 71.9 5.9 41 98-138 12-60 (113)
203 2hgn_A Heterogeneous nuclear r 99.1 2.7E-11 9.2E-16 78.4 2.4 47 1-48 77-124 (139)
204 1p1t_A Cleavage stimulation fa 99.1 4.5E-11 1.5E-15 73.2 3.3 40 99-138 6-45 (104)
205 3q2s_C Cleavage and polyadenyl 99.1 2.7E-11 9.1E-16 84.5 2.5 46 1-46 102-149 (229)
206 3n9u_C Cleavage and polyadenyl 99.1 1.1E-10 3.8E-15 76.8 5.4 40 100-139 54-95 (156)
207 2dnp_A RNA-binding protein 14; 99.1 1.2E-10 4E-15 69.6 5.0 39 98-136 6-44 (90)
208 2do0_A HnRNP M, heterogeneous 99.1 2.7E-10 9.4E-15 70.8 6.8 45 2-47 48-94 (114)
209 2lcw_A RNA-binding protein FUS 98.7 9.2E-12 3.2E-16 77.9 0.0 49 1-49 47-97 (116)
210 2err_A Ataxin-2-binding protei 99.1 1.3E-10 4.4E-15 72.0 5.2 40 98-137 26-65 (109)
211 2pe8_A Splicing factor 45; RRM 99.1 8.9E-11 3E-15 72.4 4.4 46 1-46 45-93 (105)
212 1h2v_Z 20 kDa nuclear CAP bind 99.1 1.1E-10 3.7E-15 76.6 5.0 49 1-49 71-121 (156)
213 3beg_B Splicing factor, argini 99.1 7.1E-11 2.4E-15 73.9 3.8 38 99-136 14-51 (115)
214 2dha_A FLJ20171 protein; RRM d 99.1 1.4E-11 4.6E-16 78.2 0.5 46 1-47 59-105 (123)
215 1wel_A RNA-binding protein 12; 99.1 2.1E-11 7.2E-16 77.2 1.3 46 2-47 58-104 (124)
216 1h2v_Z 20 kDa nuclear CAP bind 99.1 2.2E-10 7.4E-15 75.2 6.2 42 98-139 36-77 (156)
217 2xs2_A Deleted in azoospermia- 99.1 1.9E-11 6.6E-16 74.7 0.9 48 1-49 41-88 (102)
218 1jmt_A Splicing factor U2AF 35 99.1 1.1E-10 3.6E-15 71.9 4.2 43 1-44 59-103 (104)
219 2dgx_A KIAA0430 protein; RRM d 99.1 2.8E-10 9.5E-15 68.8 5.9 45 1-48 45-91 (96)
220 2wbr_A GW182, gawky, LD47780P; 99.1 1.7E-10 5.9E-15 68.5 4.8 37 9-45 41-79 (89)
221 4a8x_A RNA-binding protein wit 99.1 1.1E-10 3.7E-15 69.2 4.0 47 1-47 36-85 (88)
222 2cqp_A RNA-binding protein 12; 99.1 9.1E-11 3.1E-15 71.1 3.7 40 99-138 13-52 (98)
223 2e5g_A U6 snRNA-specific termi 99.1 3.6E-10 1.2E-14 68.0 6.2 38 99-138 6-43 (94)
224 2dnl_A Cytoplasmic polyadenyla 99.1 2.2E-10 7.5E-15 71.4 5.4 45 1-45 39-86 (114)
225 2jwn_A Embryonic polyadenylate 99.1 1.6E-10 5.4E-15 73.0 4.7 39 100-138 35-73 (124)
226 2nlw_A Eukaryotic translation 99.1 2.2E-10 7.6E-15 70.4 5.3 44 5-48 55-101 (105)
227 2dnq_A RNA-binding protein 4B; 99.1 3.6E-10 1.2E-14 67.4 6.1 37 99-135 6-42 (90)
228 1x4e_A RNA binding motif, sing 99.1 3.6E-11 1.2E-15 71.0 1.5 44 1-44 37-82 (85)
229 2cpx_A Hypothetical protein FL 99.1 1.8E-10 6E-15 71.8 4.7 46 4-49 60-107 (115)
230 3ulh_A THO complex subunit 4; 99.1 1.2E-10 4.2E-15 71.6 4.0 44 1-45 61-106 (107)
231 1rk8_A CG8781-PA, CG8781-PA pr 99.1 3.1E-10 1.1E-14 75.2 6.2 41 98-138 69-109 (165)
232 2fy1_A RNA-binding motif prote 99.1 2.5E-10 8.6E-15 71.5 5.4 39 99-137 5-43 (116)
233 3q2s_C Cleavage and polyadenyl 99.1 2.2E-10 7.4E-15 79.9 5.6 40 100-139 67-108 (229)
234 2hgl_A HNRPF protein, heteroge 99.1 1.7E-10 5.9E-15 74.3 4.7 41 98-138 41-84 (136)
235 2dnn_A RNA-binding protein 12; 99.0 1.8E-10 6.2E-15 71.5 4.6 39 99-138 14-52 (109)
236 2ek1_A RNA-binding protein 12; 99.0 5.9E-11 2E-15 71.5 2.3 39 100-138 14-52 (95)
237 2a3j_A U1 small nuclear ribonu 99.0 2.6E-10 8.9E-15 72.6 5.3 43 6-48 67-111 (127)
238 2kt5_A RNA and export factor-b 99.0 4.7E-10 1.6E-14 70.8 6.5 40 98-137 32-71 (124)
239 1whx_A Hypothetical protein ri 99.0 1.6E-10 5.5E-15 71.8 4.3 38 100-137 9-46 (111)
240 2hgm_A HNRPF protein, heteroge 99.0 3.4E-10 1.2E-14 72.0 5.9 40 98-138 39-80 (126)
241 2ki2_A SS-DNA binding protein 99.0 4.6E-11 1.6E-15 71.3 1.7 37 102-138 2-38 (90)
242 1l3k_A Heterogeneous nuclear r 99.0 2.8E-10 9.7E-15 76.6 5.7 42 98-139 10-51 (196)
243 2cpi_A CCR4-NOT transcription 99.0 2.1E-10 7.2E-15 71.2 4.7 41 98-138 12-55 (111)
244 2ywk_A Putative RNA-binding pr 99.0 1.5E-10 5.3E-15 69.6 3.6 43 2-45 49-93 (95)
245 2cqi_A Nucleolysin TIAR; RNA r 99.0 7.3E-10 2.5E-14 67.7 6.6 46 2-49 48-95 (103)
246 2j8a_A Histone-lysine N-methyl 99.0 7.2E-11 2.5E-15 74.9 2.1 44 1-44 38-93 (136)
247 2dis_A Unnamed protein product 99.0 3E-10 1E-14 70.0 4.8 40 99-138 6-47 (109)
248 1x4g_A Nucleolysin TIAR; struc 99.0 4E-10 1.4E-14 69.6 5.2 40 98-137 22-61 (109)
249 2lmi_A GRSF-1, G-rich sequence 99.0 2E-10 6.8E-15 70.9 3.7 41 98-138 8-51 (107)
250 2cpd_A Apobec-1 stimulating pr 99.0 1.3E-09 4.3E-14 66.1 7.2 39 98-136 12-52 (99)
251 2la4_A Nuclear and cytoplasmic 99.0 5.3E-10 1.8E-14 68.1 5.3 39 99-137 25-63 (101)
252 1rk8_A CG8781-PA, CG8781-PA pr 99.0 2E-10 6.9E-15 76.1 3.7 49 1-49 104-154 (165)
253 2j76_E EIF-4B, EIF4B, eukaryot 99.0 1.8E-10 6.1E-15 70.2 3.1 39 98-137 16-54 (100)
254 2wbr_A GW182, gawky, LD47780P; 99.0 4.1E-10 1.4E-14 67.0 4.5 38 100-137 6-43 (89)
255 1wf1_A RNA-binding protein RAL 99.0 4.8E-10 1.7E-14 69.3 5.1 36 99-134 25-61 (110)
256 1wel_A RNA-binding protein 12; 99.0 4.1E-10 1.4E-14 71.2 4.8 40 98-137 22-61 (124)
257 1x5o_A RNA binding motif, sing 99.0 2.9E-10 1E-14 70.7 4.1 46 1-47 57-112 (114)
258 3v4m_A Splicing factor U2AF 65 99.0 6.4E-10 2.2E-14 68.5 5.4 45 1-45 47-95 (105)
259 1fjc_A Nucleolin RBD2, protein 99.0 5.4E-10 1.9E-14 67.3 4.9 44 5-48 47-92 (96)
260 2hvz_A Splicing factor, argini 99.0 3.2E-10 1.1E-14 69.0 3.9 35 102-136 1-35 (101)
261 2cq3_A RNA-binding protein 9; 99.0 1.2E-09 4.3E-14 66.6 6.3 46 2-49 48-95 (103)
262 2d9o_A DNAJ (HSP40) homolog, s 99.0 9.4E-10 3.2E-14 67.2 5.6 41 8-48 51-91 (100)
263 2jvr_A Nucleolar protein 3; RN 99.0 3.9E-10 1.3E-14 70.2 3.8 38 99-136 26-64 (111)
264 2dgw_A Probable RNA-binding pr 99.0 1.3E-09 4.4E-14 65.1 6.0 39 98-137 7-45 (91)
265 2e5j_A Methenyltetrahydrofolat 99.0 1.2E-09 4.2E-14 66.0 5.9 38 98-136 16-53 (97)
266 2cq2_A Hypothetical protein LO 99.0 4.3E-10 1.5E-14 70.2 3.9 39 99-137 23-63 (114)
267 2dha_A FLJ20171 protein; RRM d 99.0 4.9E-10 1.7E-14 71.0 4.1 39 99-137 21-63 (123)
268 2krb_A Eukaryotic translation 99.0 6.2E-10 2.1E-14 65.1 4.2 34 102-135 2-41 (81)
269 2jvo_A Nucleolar protein 3; nu 99.0 8E-10 2.7E-14 68.3 4.9 37 98-134 28-64 (108)
270 2krb_A Eukaryotic translation 99.0 3.8E-10 1.3E-14 66.1 3.2 37 5-41 41-80 (81)
271 1x4a_A Splicing factor, argini 99.0 1.8E-09 6E-14 66.6 6.3 44 6-49 56-101 (109)
272 2qfj_A FBP-interacting repress 99.0 8.2E-10 2.8E-14 75.4 5.2 49 1-49 157-207 (216)
273 2dgv_A HnRNP M, heterogeneous 98.9 7.9E-10 2.7E-14 66.1 4.4 44 6-49 43-88 (92)
274 2kvi_A Nuclear polyadenylated 98.9 9.3E-10 3.2E-14 66.4 4.5 38 98-135 7-45 (96)
275 2f3j_A RNA and export factor b 98.9 1.4E-09 4.7E-14 73.0 5.5 40 98-137 85-124 (177)
276 2xnq_A Nuclear polyadenylated 98.9 1.8E-09 6E-14 65.4 5.5 38 98-135 19-57 (97)
277 2nlw_A Eukaryotic translation 98.9 2.7E-09 9.2E-14 65.5 6.3 37 99-135 13-55 (105)
278 2err_A Ataxin-2-binding protei 98.9 1.1E-09 3.6E-14 67.8 4.2 44 2-47 62-107 (109)
279 2jvr_A Nucleolar protein 3; RN 98.9 2E-09 6.7E-14 67.0 5.3 39 8-46 64-104 (111)
280 3pgw_S U1-70K; protein-RNA com 98.9 3.7E-09 1.3E-13 80.1 7.7 49 1-49 134-184 (437)
281 2yh0_A Splicing factor U2AF 65 98.9 8.2E-10 2.8E-14 74.5 3.7 48 1-48 146-195 (198)
282 2f3j_A RNA and export factor b 98.9 1.5E-09 5.1E-14 72.8 4.9 46 1-47 120-167 (177)
283 3egn_A RNA-binding protein 40; 98.9 6.2E-10 2.1E-14 72.0 2.8 44 5-48 86-131 (143)
284 2e5j_A Methenyltetrahydrofolat 98.9 1.2E-09 4.1E-14 66.0 3.9 41 7-47 52-94 (97)
285 3d2w_A TAR DNA-binding protein 98.9 2.1E-09 7.3E-14 64.1 4.8 40 10-49 47-86 (89)
286 3zzy_A Polypyrimidine tract-bi 98.9 2.1E-09 7.3E-14 68.5 5.1 38 99-136 26-63 (130)
287 2a3j_A U1 small nuclear ribonu 98.9 3.1E-09 1.1E-13 67.6 5.9 38 99-136 27-68 (127)
288 1sjr_A Polypyrimidine tract-bi 98.9 1.9E-09 6.3E-14 71.3 4.9 39 98-136 43-81 (164)
289 1nu4_A U1A RNA binding domain; 98.9 2.5E-09 8.6E-14 64.4 5.0 38 98-135 5-46 (97)
290 2hzc_A Splicing factor U2AF 65 98.9 2.3E-09 7.8E-14 63.3 4.7 39 99-137 4-53 (87)
291 1nu4_A U1A RNA binding domain; 98.9 9.1E-10 3.1E-14 66.4 2.9 43 6-48 46-90 (97)
292 2e5i_A Heterogeneous nuclear r 98.9 9.6E-09 3.3E-13 65.1 7.7 35 101-135 25-59 (124)
293 1x5p_A Negative elongation fac 98.9 6.3E-09 2.1E-13 62.8 6.5 42 8-49 46-89 (97)
294 2lcw_A RNA-binding protein FUS 98.4 2.5E-10 8.6E-15 71.3 0.0 40 99-138 5-52 (116)
295 2adc_A Polypyrimidine tract-bi 98.9 2.9E-09 1E-13 73.9 5.3 40 98-137 31-71 (229)
296 2fc9_A NCL protein; structure 98.8 6.7E-09 2.3E-13 63.1 6.0 36 98-136 12-47 (101)
297 3ue2_A Poly(U)-binding-splicin 98.8 9E-10 3.1E-14 69.2 2.0 39 7-45 67-107 (118)
298 3pgw_S U1-70K; protein-RNA com 98.8 3.2E-09 1.1E-13 80.4 5.3 40 99-138 100-139 (437)
299 1fje_B Nucleolin RBD12, protei 98.8 4.1E-09 1.4E-13 69.8 5.3 43 5-47 130-174 (175)
300 2dit_A HIV TAT specific factor 98.8 5E-09 1.7E-13 65.0 5.3 41 9-49 62-104 (112)
301 2dgu_A Heterogeneous nuclear r 98.8 1.7E-08 5.7E-13 61.6 7.6 41 10-50 44-86 (103)
302 2voo_A Lupus LA protein; RNA-b 98.8 5E-09 1.7E-13 71.1 5.5 37 101-137 109-145 (193)
303 1fj7_A Nucleolin RBD1, protein 98.8 1E-09 3.4E-14 66.8 1.8 38 99-137 15-52 (101)
304 1sjq_A Polypyrimidine tract-bi 98.8 3E-09 1E-13 65.4 3.8 40 10-49 51-94 (105)
305 2cqh_A IGF-II mRNA-binding pro 98.8 2.7E-09 9.3E-14 63.9 3.5 35 99-133 6-41 (93)
306 2cqh_A IGF-II mRNA-binding pro 98.8 6E-09 2.1E-13 62.3 4.7 41 9-49 42-85 (93)
307 2cpd_A Apobec-1 stimulating pr 98.8 1.5E-08 5E-13 61.3 6.5 41 9-49 49-91 (99)
308 3r27_A HnRNP L, heterogeneous 98.8 9.8E-09 3.4E-13 62.6 5.6 40 9-48 55-98 (100)
309 1x4f_A Matrin 3; structural ge 98.8 6.3E-09 2.2E-13 64.7 4.8 41 9-49 60-104 (112)
310 1x5p_A Negative elongation fac 98.8 2.1E-08 7E-13 60.5 7.0 37 98-136 12-48 (97)
311 2cq1_A PTB-like protein L; RRM 98.8 1.1E-08 3.9E-13 62.4 5.8 40 10-49 50-93 (101)
312 1wf0_A TDP-43, TAR DNA-binding 98.8 6.4E-09 2.2E-13 61.6 4.4 40 10-49 41-80 (88)
313 1x4g_A Nucleolysin TIAR; struc 98.8 1.1E-08 3.8E-13 63.0 5.6 39 11-49 61-101 (109)
314 2la4_A Nuclear and cytoplasmic 98.8 3.9E-09 1.3E-13 64.1 3.4 39 9-47 61-101 (101)
315 2bz2_A Negative elongation fac 98.8 7.3E-09 2.5E-13 65.3 4.8 40 9-48 71-112 (121)
316 1wg1_A KIAA1579 protein, homol 98.8 6.3E-09 2.1E-13 61.7 4.2 39 9-47 38-78 (88)
317 2voo_A Lupus LA protein; RNA-b 98.8 5.2E-09 1.8E-13 71.1 4.2 44 2-46 142-186 (193)
318 1wex_A Hypothetical protein (r 98.8 2.6E-08 9E-13 61.1 6.6 40 10-49 50-93 (104)
319 3sde_A Paraspeckle component 1 98.8 1.5E-08 5E-13 71.6 6.2 40 98-137 19-58 (261)
320 1x4d_A Matrin 3; structural ge 98.8 2E-08 6.8E-13 61.5 5.9 40 10-49 51-94 (102)
321 2dnq_A RNA-binding protein 4B; 98.7 2E-08 6.8E-13 59.7 5.8 39 11-49 42-82 (90)
322 1owx_A Lupus LA protein, SS-B, 98.7 1.3E-08 4.5E-13 64.0 5.1 42 98-139 15-57 (121)
323 2fc8_A NCL protein; structure 98.7 1.9E-08 6.6E-13 61.1 5.7 38 98-138 12-49 (102)
324 2cpj_A Non-POU domain-containi 98.7 1E-08 3.5E-13 62.0 4.4 41 9-49 49-91 (99)
325 3u1l_A PRE-mRNA-splicing facto 98.7 8.4E-09 2.9E-13 72.2 4.1 40 98-137 131-179 (240)
326 2e5g_A U6 snRNA-specific termi 98.7 1.3E-08 4.5E-13 61.0 4.3 45 2-49 39-84 (94)
327 2xnq_A Nuclear polyadenylated 98.7 2.5E-08 8.7E-13 60.3 5.2 38 10-47 56-95 (97)
328 1wg1_A KIAA1579 protein, homol 98.7 1.3E-08 4.4E-13 60.4 3.7 34 100-134 4-37 (88)
329 2dgt_A RNA-binding protein 30; 98.7 5.8E-08 2E-12 57.9 6.6 39 11-49 44-84 (92)
330 3egn_A RNA-binding protein 40; 98.7 2.4E-09 8.3E-14 69.1 0.4 33 99-131 43-75 (143)
331 1wf1_A RNA-binding protein RAL 98.7 2.4E-08 8.1E-13 61.6 4.6 38 10-47 61-100 (110)
332 2diu_A KIAA0430 protein; struc 98.7 2.6E-08 9E-13 59.8 4.5 38 12-49 47-86 (96)
333 2kvi_A Nuclear polyadenylated 98.7 1.4E-08 4.7E-13 61.2 3.3 40 10-49 44-85 (96)
334 2cpx_A Hypothetical protein FL 98.7 1.8E-08 6E-13 62.6 3.9 31 99-129 23-53 (115)
335 1fjc_A Nucleolin RBD2, protein 98.7 2E-08 6.9E-13 60.3 4.0 34 98-131 13-46 (96)
336 2hzc_A Splicing factor U2AF 65 98.7 2.8E-08 9.7E-13 58.5 4.4 36 8-43 50-86 (87)
337 2dnp_A RNA-binding protein 14; 98.7 5.7E-08 1.9E-12 57.7 5.7 38 11-48 43-82 (90)
338 2e44_A Insulin-like growth fac 98.6 3.1E-08 1.1E-12 59.5 4.6 43 2-48 49-93 (96)
339 1x4c_A Splicing factor, argini 98.6 7.1E-08 2.4E-12 59.3 6.2 38 12-49 51-95 (108)
340 1why_A Hypothetical protein ri 98.6 4.3E-08 1.5E-12 59.0 5.1 38 11-48 53-94 (97)
341 2ad9_A Polypyrimidine tract-bi 98.6 3.1E-08 1E-12 62.3 4.4 40 10-49 66-109 (119)
342 2ytc_A PRE-mRNA-splicing facto 98.6 3.2E-08 1.1E-12 58.1 4.1 35 10-44 47-84 (85)
343 2jvo_A Nucleolar protein 3; nu 98.6 3.4E-08 1.2E-12 60.9 4.4 38 11-48 65-104 (108)
344 2i2y_A Fusion protein consists 98.6 4.4E-08 1.5E-12 63.6 5.0 38 10-47 109-148 (150)
345 3s6e_A RNA-binding protein 39; 98.6 3.2E-08 1.1E-12 61.8 4.0 36 10-45 54-91 (114)
346 1whx_A Hypothetical protein ri 98.6 4.5E-08 1.6E-12 60.6 4.3 39 9-47 44-84 (111)
347 3pgw_A U1-A; protein-RNA compl 98.6 8.5E-08 2.9E-12 68.1 6.1 39 98-136 6-48 (282)
348 2diu_A KIAA0430 protein; struc 98.5 1.2E-07 4E-12 57.0 5.0 30 102-131 10-44 (96)
349 1sjr_A Polypyrimidine tract-bi 98.5 1.3E-07 4.4E-12 62.5 5.7 42 8-49 81-126 (164)
350 3tht_A Alkylated DNA repair pr 98.5 9.8E-08 3.4E-12 70.1 4.7 40 98-137 15-56 (345)
351 2cq2_A Hypothetical protein LO 98.5 2E-07 6.9E-12 58.0 5.1 38 10-47 62-106 (114)
352 2bz2_A Negative elongation fac 98.5 1.4E-07 4.7E-12 59.4 4.3 36 99-136 37-72 (121)
353 3dxb_A Thioredoxin N-terminall 98.5 1.7E-07 6E-12 64.5 4.7 42 4-45 168-211 (222)
354 3zzy_A Polypyrimidine tract-bi 98.4 4.8E-07 1.6E-11 57.6 4.7 40 9-48 63-107 (130)
355 3beg_B Splicing factor, argini 98.4 3.9E-07 1.3E-11 56.6 4.1 36 12-47 52-94 (115)
356 2pe8_A Splicing factor 45; RRM 98.3 1.3E-06 4.5E-11 53.5 5.6 40 99-138 6-50 (105)
357 3u1l_A PRE-mRNA-splicing facto 98.3 5.2E-07 1.8E-11 63.1 4.1 40 9-48 177-230 (240)
358 2e5i_A Heterogeneous nuclear r 98.3 1.5E-06 5.2E-11 54.8 5.3 38 12-49 62-104 (124)
359 3md3_A Nuclear and cytoplasmic 98.2 6.5E-07 2.2E-11 58.2 2.8 30 1-30 119-148 (166)
360 1qm9_A Polypyrimidine tract-bi 98.1 1.3E-06 4.5E-11 58.7 3.4 39 9-47 156-197 (198)
361 2g4b_A Splicing factor U2AF 65 98.1 6.9E-07 2.4E-11 58.6 1.9 30 1-30 126-155 (172)
362 2dit_A HIV TAT specific factor 98.1 8.6E-06 2.9E-10 50.2 5.8 39 98-137 12-61 (112)
363 2dnr_A Synaptojanin-1; RRM dom 98.1 5.3E-06 1.8E-10 49.3 4.5 37 12-48 50-87 (91)
364 1fxl_A Paraneoplastic encephal 98.1 1.8E-06 6.1E-11 56.2 2.8 35 2-39 121-155 (167)
365 1b7f_A Protein (SXL-lethal pro 98.0 2.4E-06 8.1E-11 55.7 2.8 36 1-39 121-156 (168)
366 3nmr_A Cugbp ELAV-like family 97.9 6.1E-06 2.1E-10 54.0 3.2 28 2-30 128-155 (175)
367 3v4m_A Splicing factor U2AF 65 97.8 1.7E-05 5.8E-10 48.5 3.9 39 100-138 4-52 (105)
368 3ue2_A Poly(U)-binding-splicin 97.8 1.9E-05 6.6E-10 49.3 4.1 39 100-138 19-62 (118)
369 3tyt_A Heterogeneous nuclear r 97.8 1.5E-05 5.1E-10 54.4 3.7 30 8-37 162-193 (205)
370 1ufw_A Synaptojanin 2; RNP dom 97.7 3.7E-05 1.3E-09 45.9 3.9 32 14-45 61-93 (95)
371 2d9o_A DNAJ (HSP40) homolog, s 97.6 0.00023 7.9E-09 43.0 6.5 35 101-135 10-51 (100)
372 3tht_A Alkylated DNA repair pr 97.6 6.6E-05 2.2E-09 55.2 4.5 35 10-44 55-96 (345)
373 2dhx_A Poly (ADP-ribose) polym 97.4 0.00026 8.8E-09 42.8 4.9 36 12-47 48-84 (104)
374 1jmt_A Splicing factor U2AF 35 97.4 2.1E-05 7.1E-10 48.0 -0.3 34 105-138 19-64 (104)
375 2dnr_A Synaptojanin-1; RRM dom 97.0 0.00096 3.3E-08 39.5 4.2 37 101-137 7-51 (91)
376 3s6e_A RNA-binding protein 39; 96.7 0.0032 1.1E-07 38.8 5.1 39 99-137 5-53 (114)
377 2l9w_A U4/U6 snRNA-associated- 96.4 0.0058 2E-07 37.4 4.5 40 99-138 19-63 (117)
378 1whv_A Poly(A)-specific ribonu 96.3 0.0086 3E-07 35.8 5.1 29 99-128 14-42 (100)
379 1ufw_A Synaptojanin 2; RNP dom 96.3 0.0016 5.5E-08 38.8 1.6 37 101-137 15-60 (95)
380 1uw4_A UPF3X; nonsense mediate 95.9 0.016 5.5E-07 34.3 4.8 34 102-135 2-35 (91)
381 1owx_A Lupus LA protein, SS-B, 95.8 0.015 5.1E-07 36.2 4.5 32 13-44 57-93 (121)
382 3ctr_A Poly(A)-specific ribonu 95.1 0.018 6.2E-07 34.5 3.1 26 102-128 7-32 (101)
383 2dhx_A Poly (ADP-ribose) polym 94.5 0.17 5.8E-06 30.5 6.1 36 99-134 6-46 (104)
384 2l9w_A U4/U6 snRNA-associated- 94.3 0.054 1.9E-06 33.1 3.8 31 12-42 63-95 (117)
385 3dxb_A Thioredoxin N-terminall 92.2 0.1 3.6E-06 35.3 3.0 26 112-137 140-165 (222)
386 3pq1_A Poly(A) RNA polymerase; 91.8 0.1 3.4E-06 39.8 2.8 36 101-137 53-88 (464)
387 2l08_A Regulator of nonsense t 89.7 0.16 5.5E-06 30.3 1.8 28 101-128 9-36 (97)
388 3p3d_A Nucleoporin 53; structu 85.0 0.71 2.4E-05 29.0 2.8 35 11-45 62-97 (132)
389 1wey_A Calcipressin 1; structu 83.8 0.67 2.3E-05 27.9 2.2 34 102-135 6-44 (104)
390 1wwh_A Nucleoporin 35, nucleop 76.2 3.6 0.00012 25.3 3.8 34 99-133 22-55 (119)
391 3fut_A Dimethyladenosine trans 75.5 2.1 7.1E-05 30.1 2.9 34 102-136 111-144 (271)
392 1wey_A Calcipressin 1; structu 73.6 2.5 8.7E-05 25.4 2.5 34 14-47 49-84 (104)
393 3uzu_A Ribosomal RNA small sub 73.5 1 3.5E-05 31.8 0.9 36 102-137 115-150 (279)
394 2k5n_A Putative cold-shock pro 69.7 2.2 7.4E-05 23.9 1.5 12 9-20 12-23 (74)
395 3cam_A Cold-shock domain famil 69.0 2.1 7E-05 23.4 1.3 11 9-19 11-21 (67)
396 3ulj_A LIN28B, DNA-binding pro 69.0 2.2 7.7E-05 24.8 1.5 10 9-18 18-27 (90)
397 2kcm_A Cold shock domain famil 68.8 2.1 7.1E-05 24.0 1.3 12 9-20 10-21 (74)
398 3tqs_A Ribosomal RNA small sub 68.7 1.4 4.6E-05 30.7 0.6 34 104-137 99-132 (255)
399 1c9o_A CSPB, cold-shock protei 68.6 2.1 7.2E-05 23.2 1.3 11 9-19 11-21 (66)
400 1wwh_A Nucleoporin 35, nucleop 68.4 6 0.0002 24.3 3.4 34 11-44 59-94 (119)
401 3a0j_A Cold shock protein; OB- 67.4 2.3 7.9E-05 23.6 1.3 11 9-19 11-21 (73)
402 1h95_A CSD, Y-box binding prot 66.9 2.7 9.1E-05 23.8 1.5 10 9-18 18-27 (79)
403 1g6p_A Cold shock protein TMCS 66.6 2.5 8.4E-05 23.0 1.3 11 9-19 10-20 (66)
404 1i4w_A Mitochondrial replicati 65.8 2.9 9.8E-05 30.7 1.9 22 103-124 144-165 (353)
405 3i2z_B RNA chaperone, negative 64.3 2.9 9.8E-05 23.1 1.3 11 9-19 15-25 (71)
406 3ftd_A Dimethyladenosine trans 62.7 4 0.00014 28.1 2.1 34 103-136 97-130 (249)
407 1qyr_A KSGA, high level kasuga 62.5 5.5 0.00019 27.5 2.8 33 103-135 92-124 (252)
408 2yty_A Cold shock domain-conta 60.1 3.7 0.00013 23.7 1.3 8 11-18 28-35 (88)
409 2ytv_A Cold shock domain-conta 59.6 2.5 8.6E-05 23.9 0.5 10 10-19 17-26 (79)
410 2ytx_A Cold shock domain-conta 59.4 3.9 0.00013 24.1 1.3 10 10-19 27-36 (97)
411 3aqq_A Calcium-regulated heat 56.7 5.5 0.00019 25.4 1.8 12 9-20 72-83 (147)
412 2lss_A Cold shock-like protein 61.2 2.3 8E-05 23.4 0.0 12 9-20 14-25 (70)
413 1x65_A UNR protein; cell-free 52.2 5.2 0.00018 23.2 1.0 10 11-20 18-27 (89)
414 2ki0_A DS119; beta-alpha-beta, 51.5 9 0.00031 17.4 1.5 18 101-123 5-22 (36)
415 1wfq_A UNR protein; beta-barre 50.9 8.3 0.00029 22.3 1.8 9 11-19 28-36 (89)
416 3d45_A Poly(A)-specific ribonu 49.5 30 0.001 26.5 5.2 33 100-134 439-471 (507)
417 3ts2_A Protein LIN-28 homolog 46.6 7.8 0.00027 24.6 1.3 11 9-19 19-29 (148)
418 2v94_A RPS24, 30S ribosomal pr 44.4 13 0.00046 22.3 2.0 20 7-27 70-89 (107)
419 1xn9_A 30S ribosomal protein S 42.3 12 0.00041 22.2 1.6 20 7-27 61-80 (101)
420 1ywx_A 30S ribosomal protein S 41.3 13 0.00044 22.2 1.6 19 7-26 61-79 (102)
421 4aj5_1 SKA3, spindle and kinet 40.5 11 0.00038 22.3 1.2 12 115-126 90-101 (101)
422 2g1d_A 30S ribosomal protein S 40.5 12 0.00039 22.2 1.3 18 7-25 62-79 (98)
423 2e5q_A PHD finger protein 19; 40.0 21 0.00072 19.1 2.1 13 9-21 33-45 (63)
424 2bh8_A 1B11; transcription, mo 36.3 19 0.00064 21.1 1.8 9 10-18 27-35 (101)
425 2e5p_A Protein PHF1, PHD finge 36.2 24 0.00082 19.2 2.0 13 9-21 35-47 (68)
426 3pc6_A DNA repair protein XRCC 35.1 36 0.0012 20.1 2.9 29 100-128 9-37 (104)
427 3lpe_A Putative transcription 34.5 41 0.0014 19.3 3.0 21 10-30 49-69 (92)
428 3zzp_A TS9, ribosomal protein 33.2 65 0.0022 17.9 4.5 31 13-43 7-40 (77)
429 1ik9_C DNA ligase IV; DNA END 30.0 35 0.0012 16.1 1.9 14 112-125 21-34 (37)
430 2xzm_P RPS24E; ribosome, trans 29.1 32 0.0011 21.9 2.0 19 7-26 64-82 (149)
431 4eyt_A Telomerase associated p 28.7 90 0.0031 18.1 3.9 19 12-30 47-65 (129)
432 3h7h_B Transcription elongatio 28.1 60 0.0021 19.2 3.1 23 9-31 49-71 (106)
433 1eij_A Hypothetical protein MT 27.0 46 0.0016 18.8 2.2 19 107-125 50-68 (80)
434 2m0o_A PHD finger protein 1; t 26.6 42 0.0014 18.8 2.0 13 9-21 52-64 (79)
435 2jsh_A Appetite-regulating hor 24.9 30 0.001 15.1 1.0 22 108-129 2-23 (26)
436 2eqj_A Metal-response element- 24.7 49 0.0017 18.0 2.0 13 9-21 39-51 (66)
437 3u5c_Y RP50, 40S ribosomal pro 24.4 43 0.0015 21.0 2.0 19 7-26 66-84 (135)
438 1ytr_A Bacteriocin plantaricin 24.3 45 0.0015 13.9 1.4 12 115-126 14-25 (26)
439 3ghf_A Septum site-determining 24.2 74 0.0025 19.2 3.1 27 103-129 51-77 (120)
440 1jsd_A Haemagglutinin (HA1 cha 24.0 52 0.0018 23.7 2.5 24 113-136 96-119 (319)
441 4fqi_A Hemagglutinin HA1; neut 23.8 47 0.0016 24.1 2.3 24 113-136 100-123 (334)
442 2lvl_A SPAI; lantibiotic SELF- 23.4 40 0.0014 19.8 1.6 22 101-122 56-77 (128)
443 4gxx_A Hemagglutinin HA1 chain 23.0 50 0.0017 23.9 2.3 24 113-136 100-123 (331)
444 4id3_A DNA repair protein REV1 22.7 1E+02 0.0035 16.8 3.4 31 99-130 8-38 (92)
445 1fme_A FSD-EY peptide; beta-BE 22.3 55 0.0019 13.9 1.5 12 114-125 14-25 (28)
446 3pc7_A DNA ligase 3; DNA repai 22.2 36 0.0012 19.5 1.2 26 99-127 17-43 (88)
447 3lfj_A Manxb, phosphotransfera 22.0 1.8E+02 0.006 19.2 7.1 30 12-43 98-127 (187)
448 3ubq_A Hemagglutinin HA1; vira 21.3 49 0.0017 23.9 2.0 24 113-136 98-121 (329)
449 3c8l_A FTSZ-like protein of un 21.2 40 0.0014 20.7 1.3 25 108-134 63-87 (122)
450 4i78_A Hemagglutinin HA1; infl 20.8 55 0.0019 23.7 2.2 24 113-136 100-123 (328)
451 2nn4_A Hypothetical protein YQ 20.6 27 0.00093 19.3 0.5 18 114-131 4-21 (72)
452 1gcc_A Ethylene responsive ele 20.4 62 0.0021 17.1 1.9 19 11-29 26-44 (63)
453 3ku3_A Hemagglutinin HA1 chain 20.3 50 0.0017 23.9 1.9 24 113-136 98-121 (327)
No 1
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.90 E-value=2.4e-23 Score=141.50 Aligned_cols=96 Identities=33% Similarity=0.597 Sum_probs=78.5
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHHc-CcccCCcEEEEeecCCCCCCCCCCccCCCCCCCCCCCccchhhhcccCC
Q 032483 1 MPKDQGSKAHRGIGFITFASADSVENLMVD-THELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALG 79 (139)
Q Consensus 1 i~~d~~tg~srG~gFV~F~~~~~a~~Ai~~-~~~i~gr~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 79 (139)
|++|+.+|++||||||+|.+.++|++||+. .+.++|+.|.|.++.++.....+.
T Consensus 45 i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~v~~~~~~~~~~~~~------------------------- 99 (196)
T 1l3k_A 45 VMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPG------------------------- 99 (196)
T ss_dssp EEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEEEECCC---------------------------------
T ss_pred EEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEEeeeecccCcccccccc-------------------------
Confidence 467889999999999999999999999995 688999999999987653321110
Q ss_pred CCCcCCCCCCCCCCCCCCCCCCceeEEeCCCCCCCHHHHHHHHhcCcceeEEEEeccCC
Q 032483 80 APTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKVRQ 138 (139)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~lfV~nL~~~~t~~~L~~~F~~fG~v~~~~i~~d~~ 138 (139)
.....++|||+|||+.+|+++|+++|++||.|.+|.|++|+.
T Consensus 100 -----------------~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~ 141 (196)
T 1l3k_A 100 -----------------AHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRG 141 (196)
T ss_dssp --------------------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTT
T ss_pred -----------------cCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCC
Confidence 023358999999999999999999999999999999999864
No 2
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.89 E-value=9.4e-24 Score=140.22 Aligned_cols=90 Identities=29% Similarity=0.585 Sum_probs=79.9
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHHcCcccCCcEEEEeecCCCCCCCCCCccCCCCCCCCCCCccchhhhcccCCC
Q 032483 1 MPKDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGA 80 (139)
Q Consensus 1 i~~d~~tg~srG~gFV~F~~~~~a~~Ai~~~~~i~gr~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 80 (139)
|++|+.||++||||||+|.+.++|++||+.++.++|+.|.|.++.++..
T Consensus 35 i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~g~~i~v~~~~~~~~------------------------------- 83 (167)
T 2cjk_A 35 IMKDPATGRSRGFGFLSFEKPSSVDEVVKTQHILDGKVIDPKRAIPRDE------------------------------- 83 (167)
T ss_dssp CCCCTTTSSCCSCEEEEESSTHHHHHHHHSCCEETTEECCCEECCCHHH-------------------------------
T ss_pred EEECCCCCCccceEEEEEccHHHHHHHHhcccccCCeEcccccccchhh-------------------------------
Confidence 5788999999999999999999999999988899999999988765421
Q ss_pred CCcCCCCCCCCCCCCCCCCCCceeEEeCCCCCCCHHHHHHHHhcCcceeEEEEeccCC
Q 032483 81 PTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKVRQ 138 (139)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~lfV~nL~~~~t~~~L~~~F~~fG~v~~~~i~~d~~ 138 (139)
....++|||+|||+.+++++|+++|++||.|.+|.|++|+.
T Consensus 84 -----------------~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~ 124 (167)
T 2cjk_A 84 -----------------QDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKD 124 (167)
T ss_dssp -----------------HHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSS
T ss_pred -----------------ccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCC
Confidence 12256899999999999999999999999999999999864
No 3
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.88 E-value=6e-22 Score=131.47 Aligned_cols=90 Identities=18% Similarity=0.345 Sum_probs=79.5
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHH--cCcccCCcEEEEeecCCCCCCCCCCccCCCCCCCCCCCccchhhhcccC
Q 032483 1 MPKDQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAAL 78 (139)
Q Consensus 1 i~~d~~tg~srG~gFV~F~~~~~a~~Ai~--~~~~i~gr~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (139)
|++|+.+|+++|||||+|.+.++|++|++ ++..++|++|.|.++.++..
T Consensus 35 i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~----------------------------- 85 (168)
T 1b7f_A 35 IMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARPGGE----------------------------- 85 (168)
T ss_dssp CCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCSS-----------------------------
T ss_pred EEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecCCCcc-----------------------------
Confidence 46788899999999999999999999998 47889999999998876532
Q ss_pred CCCCcCCCCCCCCCCCCCCCCCCceeEEeCCCCCCCHHHHHHHHhcCcceeEEEEeccCC
Q 032483 79 GAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKVRQ 138 (139)
Q Consensus 79 g~~~~~~~~~~~~~~~~~~~~~~~~lfV~nL~~~~t~~~L~~~F~~fG~v~~~~i~~d~~ 138 (139)
....++|||+|||+.+++++|+++|++||.|.++.+++|+.
T Consensus 86 -------------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~ 126 (168)
T 1b7f_A 86 -------------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKL 126 (168)
T ss_dssp -------------------TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTT
T ss_pred -------------------cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCC
Confidence 12357999999999999999999999999999999999863
No 4
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.87 E-value=9.8e-22 Score=130.12 Aligned_cols=90 Identities=22% Similarity=0.415 Sum_probs=78.9
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHH--cCcccCCcEEEEeecCCCCCCCCCCccCCCCCCCCCCCccchhhhcccC
Q 032483 1 MPKDQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAAL 78 (139)
Q Consensus 1 i~~d~~tg~srG~gFV~F~~~~~a~~Ai~--~~~~i~gr~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (139)
|++|+.+|+++|||||+|.+.++|++|++ ++..+.|++|.|.++.+...
T Consensus 34 ~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~----------------------------- 84 (167)
T 1fxl_A 34 LVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSA----------------------------- 84 (167)
T ss_dssp EEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCCG-----------------------------
T ss_pred EEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCCCcc-----------------------------
Confidence 35778899999999999999999999998 47889999999998875422
Q ss_pred CCCCcCCCCCCCCCCCCCCCCCCceeEEeCCCCCCCHHHHHHHHhcCcceeEEEEeccCC
Q 032483 79 GAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKVRQ 138 (139)
Q Consensus 79 g~~~~~~~~~~~~~~~~~~~~~~~~lfV~nL~~~~t~~~L~~~F~~fG~v~~~~i~~d~~ 138 (139)
....++|||+|||+.+++++|+++|++||.|.++.+++|+.
T Consensus 85 -------------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~ 125 (167)
T 1fxl_A 85 -------------------SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQV 125 (167)
T ss_dssp -------------------GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT
T ss_pred -------------------cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCC
Confidence 12357899999999999999999999999999999998863
No 5
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.86 E-value=3.3e-22 Score=138.32 Aligned_cols=92 Identities=18% Similarity=0.227 Sum_probs=78.6
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHHc--CcccCCcEEEEeecCCCCCCCCCCccCCCCCCCCCCCccchhhhcccC
Q 032483 1 MPKDQGSKAHRGIGFITFASADSVENLMVD--THELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAAL 78 (139)
Q Consensus 1 i~~d~~tg~srG~gFV~F~~~~~a~~Ai~~--~~~i~gr~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (139)
|++|+.||+++|||||+|.+.++|++||+. ...+.|+.|.+.++.......
T Consensus 47 i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~~~~~~~--------------------------- 99 (213)
T 4f02_A 47 VCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLR--------------------------- 99 (213)
T ss_dssp EEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCTHHH---------------------------
T ss_pred EecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccccccccccc---------------------------
Confidence 468999999999999999999999999984 678999999998775432100
Q ss_pred CCCCcCCCCCCCCCCCCCCCCCCceeEEeCCCCCCCHHHHHHHHhcCcceeEEEEeccCC
Q 032483 79 GAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKVRQ 138 (139)
Q Consensus 79 g~~~~~~~~~~~~~~~~~~~~~~~~lfV~nL~~~~t~~~L~~~F~~fG~v~~~~i~~d~~ 138 (139)
....++|||+|||+.+|+++|+++|++||.|++|+|++|+.
T Consensus 100 -------------------~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~ 140 (213)
T 4f02_A 100 -------------------KSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN 140 (213)
T ss_dssp -------------------HHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETT
T ss_pred -------------------ccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCC
Confidence 12246899999999999999999999999999999998864
No 6
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.84 E-value=1.4e-20 Score=129.58 Aligned_cols=101 Identities=20% Similarity=0.389 Sum_probs=76.8
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHH--cCcccCCcEEEEeecCCCCCCCCCCccCCCCCCCCCCCccchhhhcccC
Q 032483 1 MPKDQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAAL 78 (139)
Q Consensus 1 i~~d~~tg~srG~gFV~F~~~~~a~~Ai~--~~~~i~gr~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (139)
|++|+.+|+++|||||+|.+.++|++||+ ++..|+|+.|.|.++........ ......
T Consensus 60 i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~~~~~~~------------------~~~~~~-- 119 (216)
T 2qfj_A 60 MSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQP------------------IIDQLA-- 119 (216)
T ss_dssp ECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCSCCGGGHH------------------HHHHHH--
T ss_pred EeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCCCccccch------------------hhhhhh--
Confidence 46788899999999999999999999999 36889999999987654421100 000000
Q ss_pred CCCCcCCCCCCCCCCCCCCCCCCceeEEeCCCCCCCHHHHHHHHhcCcceeEEEEeccCC
Q 032483 79 GAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKVRQ 138 (139)
Q Consensus 79 g~~~~~~~~~~~~~~~~~~~~~~~~lfV~nL~~~~t~~~L~~~F~~fG~v~~~~i~~d~~ 138 (139)
......++|||+|||+++++++|+++|++||.|++|.|++|+.
T Consensus 120 -----------------~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~ 162 (216)
T 2qfj_A 120 -----------------EEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPT 162 (216)
T ss_dssp -----------------HHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTT
T ss_pred -----------------cccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCC
Confidence 0023368999999999999999999999999999999999864
No 7
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.84 E-value=1.9e-20 Score=127.31 Aligned_cols=107 Identities=18% Similarity=0.260 Sum_probs=77.9
Q ss_pred CCCCCCccceEEEEECCHHHHHHHHH-cCcccCCcEEEEeecCCCCCCCCCCccCCCCCCCCCCCccchhhhcccCCCCC
Q 032483 4 DQGSKAHRGIGFITFASADSVENLMV-DTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPT 82 (139)
Q Consensus 4 d~~tg~srG~gFV~F~~~~~a~~Ai~-~~~~i~gr~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 82 (139)
+..++++||||||+|.+.++|++||. ++..++|++|.|.++.+............. ..+
T Consensus 44 ~~~~~~~~g~afV~F~~~~~A~~Al~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~-------------------~~~- 103 (198)
T 2yh0_A 44 AVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQPLPGMSENPSV-------------------YVP- 103 (198)
T ss_dssp EEEEETTTTEEEEEESCSHHHHHHGGGTTEEETTEEEEEECCCCCCCCCCSSSCSSC-------------------CCT-
T ss_pred EeEecCCCCEEEEEeCCHHHHHHHHHhcCCEEcCceEEEeCCCCCCCCCCCcCCCcC-------------------CCC-
Confidence 34568899999999999999999996 368899999999987655322111000000 000
Q ss_pred cCCCCCCCCCCCCCCCCCCceeEEeCCCCCCCHHHHHHHHhcCcceeEEEEeccCC
Q 032483 83 LYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKVRQ 138 (139)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~lfV~nL~~~~t~~~L~~~F~~fG~v~~~~i~~d~~ 138 (139)
+ ..........++|||+|||+.+++++|+++|++||.|.+|.|++|+.
T Consensus 104 -----~---~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~ 151 (198)
T 2yh0_A 104 -----G---VVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSA 151 (198)
T ss_dssp -----T---SSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTT
T ss_pred -----C---CccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCC
Confidence 0 00011134578999999999999999999999999999999999864
No 8
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.84 E-value=2.4e-20 Score=123.29 Aligned_cols=90 Identities=18% Similarity=0.223 Sum_probs=75.8
Q ss_pred CCCCCCCCccceEEEEECCHHHHHHHHH--cCcccCCcEEEEeecCCCCCCCCCCccCCCCCCCCCCCccchhhhcccCC
Q 032483 2 PKDQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALG 79 (139)
Q Consensus 2 ~~d~~tg~srG~gFV~F~~~~~a~~Ai~--~~~~i~gr~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 79 (139)
++|+ +++++|||||+|.+.++|++|++ ++..+.|+.|.|.++.+.....
T Consensus 33 ~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~~~~---------------------------- 83 (166)
T 3md3_A 33 MIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQQSS---------------------------- 83 (166)
T ss_dssp ECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCCCCC----------------------------
T ss_pred EECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCCCCC----------------------------
Confidence 4564 47899999999999999999997 4788999999999886543210
Q ss_pred CCCcCCCCCCCCCCCCCCCCCCceeEEeCCCCCCCHHHHHHHHhcCcceeEEEEeccCC
Q 032483 80 APTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKVRQ 138 (139)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~lfV~nL~~~~t~~~L~~~F~~fG~v~~~~i~~d~~ 138 (139)
....++|||+|||+.+++++|+++|++||.|.++.+++|+.
T Consensus 84 ------------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~ 124 (166)
T 3md3_A 84 ------------------SDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQ 124 (166)
T ss_dssp ------------------CTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTT
T ss_pred ------------------CCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCC
Confidence 23367999999999999999999999999999999998864
No 9
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.84 E-value=8.9e-21 Score=126.34 Aligned_cols=86 Identities=19% Similarity=0.351 Sum_probs=73.4
Q ss_pred CCCCCccceEEEEECCHHHHHHHHH-cCcccCCcEEEEeecCCCCCCCCCCccCCCCCCCCCCCccchhhhcccCCCCCc
Q 032483 5 QGSKAHRGIGFITFASADSVENLMV-DTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTL 83 (139)
Q Consensus 5 ~~tg~srG~gFV~F~~~~~a~~Ai~-~~~~i~gr~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 83 (139)
..++++||||||+|.+.++|++||. ++..++|++|.|.++.+...
T Consensus 45 ~~~~~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~i~v~~~~~~~~---------------------------------- 90 (172)
T 2g4b_A 45 VQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQP---------------------------------- 90 (172)
T ss_dssp EEEETTTTEEEEEESSHHHHHHHGGGTTCEETTEECEEECCSSCCC----------------------------------
T ss_pred eEecCCCCEEEEEeCCHHHHHHHHHhCCcEecCceeeecCCcccCC----------------------------------
Confidence 3457889999999999999999996 36889999999987654321
Q ss_pred CCCCCCCCCCCCCCCCCCceeEEeCCCCCCCHHHHHHHHhcCcceeEEEEeccCC
Q 032483 84 YDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKVRQ 138 (139)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~lfV~nL~~~~t~~~L~~~F~~fG~v~~~~i~~d~~ 138 (139)
....++|||+|||+.+++++|+++|++||.|.+|.|++|+.
T Consensus 91 --------------~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~ 131 (172)
T 2g4b_A 91 --------------LPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSA 131 (172)
T ss_dssp --------------CTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTT
T ss_pred --------------CCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCC
Confidence 12257899999999999999999999999999999999864
No 10
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.82 E-value=3.5e-20 Score=123.90 Aligned_cols=85 Identities=18% Similarity=0.317 Sum_probs=73.0
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHH-cCcccCCcEEEEeecCCCCCCCCCCccCCCCCCCCCCCccchhhhcccCC
Q 032483 1 MPKDQGSKAHRGIGFITFASADSVENLMV-DTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALG 79 (139)
Q Consensus 1 i~~d~~tg~srG~gFV~F~~~~~a~~Ai~-~~~~i~gr~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 79 (139)
+++|..+|++||||||+|.+.++|++||+ ++..+.|++|.|.++.++....
T Consensus 44 ~~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~v~~~~~~~~~~---------------------------- 95 (175)
T 1fje_B 44 AVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPKGRDSKK---------------------------- 95 (175)
T ss_dssp CCCEEEEETTTTEEEEEESSHHHHHHHHHGGGEEETTEEEEEECCCCSSCST----------------------------
T ss_pred EEEECCCCccccEEEEEECCHHHHHHHHhcCCCEeCCeEEEEecCCCccccc----------------------------
Confidence 36778899999999999999999999997 4688999999999887653210
Q ss_pred CCCcCCCCCCCCCCCCCCCCCCceeEEeCCCCCCCHHHHHHHHhcCcceeEE
Q 032483 80 APTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDV 131 (139)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~lfV~nL~~~~t~~~L~~~F~~fG~v~~~ 131 (139)
....++|||+|||+.+++++|+++|++||.|..+
T Consensus 96 ------------------~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~ 129 (175)
T 1fje_B 96 ------------------VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV 129 (175)
T ss_dssp ------------------TGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE
T ss_pred ------------------cccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe
Confidence 2336799999999999999999999999999877
No 11
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.81 E-value=6.7e-20 Score=131.29 Aligned_cols=92 Identities=17% Similarity=0.149 Sum_probs=78.8
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHH--cCcccCCcEEEEeecCCCCCCCCCCccCCCCCCCCCCCccchhhhcccC
Q 032483 1 MPKDQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAAL 78 (139)
Q Consensus 1 i~~d~~tg~srG~gFV~F~~~~~a~~Ai~--~~~~i~gr~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (139)
|++|+.+|+++|||||+|.+.++|.+|+. ++..++|++|.|.++.++.....
T Consensus 127 i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~~~~~~~-------------------------- 180 (284)
T 3smz_A 127 LVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDAGQLTPA-------------------------- 180 (284)
T ss_dssp EEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCGGGCCTT--------------------------
T ss_pred EEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCCCCcc--------------------------
Confidence 35788899999999999999999999997 47889999999999876532110
Q ss_pred CCCCcCCCCCCCCCCCCCCCCCCceeEEeCCCCCC-CHHHHHHHHhcCcceeEEEEeccC
Q 032483 79 GAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEA-TAEDLRRYFSRFGRILDVYVPKVR 137 (139)
Q Consensus 79 g~~~~~~~~~~~~~~~~~~~~~~~~lfV~nL~~~~-t~~~L~~~F~~fG~v~~~~i~~d~ 137 (139)
....++|||+|||+.+ ++++|+++|++||.|.+|.|++|+
T Consensus 181 -------------------~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~ 221 (284)
T 3smz_A 181 -------------------LLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ 221 (284)
T ss_dssp -------------------TTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS
T ss_pred -------------------cCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC
Confidence 2336799999999995 999999999999999999999885
No 12
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.81 E-value=5.6e-20 Score=122.55 Aligned_cols=91 Identities=19% Similarity=0.377 Sum_probs=72.5
Q ss_pred CCCCCCCC--CccceEEEEECCHHHHHHHHHc--CcccC---CcEEEEeecCCCCCCCCCCccCCCCCCCCCCCccchhh
Q 032483 1 MPKDQGSK--AHRGIGFITFASADSVENLMVD--THELG---GSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAAT 73 (139)
Q Consensus 1 i~~d~~tg--~srG~gFV~F~~~~~a~~Ai~~--~~~i~---gr~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (139)
|++|+.+| +++|||||+|.+.++|++|++. +..+. ++.+.+.++.+....
T Consensus 35 i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~----------------------- 91 (175)
T 3nmr_A 35 VLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKNN----------------------- 91 (175)
T ss_dssp EEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEECGGGCCS-----------------------
T ss_pred EEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceEEccccccccc-----------------------
Confidence 35677776 9999999999999999999984 33333 577777765433210
Q ss_pred hcccCCCCCcCCCCCCCCCCCCCCCCCCceeEEeCCCCCCCHHHHHHHHhcCcceeEEEEeccCC
Q 032483 74 RYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKVRQ 138 (139)
Q Consensus 74 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfV~nL~~~~t~~~L~~~F~~fG~v~~~~i~~d~~ 138 (139)
....++|||+|||+.+|+++|+++|++||.|.+|.|++|++
T Consensus 92 ------------------------~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~ 132 (175)
T 3nmr_A 92 ------------------------AVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPD 132 (175)
T ss_dssp ------------------------CGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT
T ss_pred ------------------------cCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCC
Confidence 22357999999999999999999999999999999998853
No 13
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.81 E-value=1.2e-18 Score=124.67 Aligned_cols=43 Identities=19% Similarity=0.250 Sum_probs=38.2
Q ss_pred CCCCccceEEEEECCHHHHHHHHHc--CcccCCcEEEEeecCCCC
Q 032483 6 GSKAHRGIGFITFASADSVENLMVD--THELGGSTVVVDRATPKE 48 (139)
Q Consensus 6 ~tg~srG~gFV~F~~~~~a~~Ai~~--~~~i~gr~i~v~~~~~~~ 48 (139)
.+|++||||||+|.+.++|++||+. +..|.|+.|.|.++..+.
T Consensus 47 ~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 91 (282)
T 3pgw_A 47 RSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKTDS 91 (282)
T ss_pred CCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEEeccCc
Confidence 3889999999999999999999984 688999999999986543
No 14
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.80 E-value=2.6e-19 Score=128.66 Aligned_cols=96 Identities=23% Similarity=0.388 Sum_probs=72.6
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHH--cCcccCCcEEEEeecCCCCCCCCCCccCCCCCCCCCCCccchhhhcccC
Q 032483 1 MPKDQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAAL 78 (139)
Q Consensus 1 i~~d~~tg~srG~gFV~F~~~~~a~~Ai~--~~~~i~gr~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (139)
|++|+. |+++|||||+|.+.++|.+|+. ++..++|++|.|+++.++....+.
T Consensus 150 i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~------------------------- 203 (292)
T 2ghp_A 150 LPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNPLEKSKRT------------------------- 203 (292)
T ss_dssp CC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCC-------------------------------
T ss_pred EEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCcccccc-------------------------
Confidence 355554 8899999999999999999999 478899999999998866432211
Q ss_pred CCCCcCCCCCCCCCCCCCCCCCCceeEEeCCCCC-CCHHHHHHHHhcCcceeEEEEeccCC
Q 032483 79 GAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQE-ATAEDLRRYFSRFGRILDVYVPKVRQ 138 (139)
Q Consensus 79 g~~~~~~~~~~~~~~~~~~~~~~~~lfV~nL~~~-~t~~~L~~~F~~fG~v~~~~i~~d~~ 138 (139)
.......++|||+|||+. +++++|+++|++||.|.+|.|++|+.
T Consensus 204 ----------------~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~ 248 (292)
T 2ghp_A 204 ----------------DSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQK 248 (292)
T ss_dssp -------------------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC
T ss_pred ----------------cccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCC
Confidence 001334689999999999 99999999999999999999999864
No 15
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.78 E-value=2.7e-18 Score=118.21 Aligned_cols=117 Identities=13% Similarity=0.058 Sum_probs=72.4
Q ss_pred ccceEEEEECCHHHHHHHHH--cCcccCCcEEEEeecCCCCCCCCCCccCCCCCCCCCCCccchhhhcccCCCCCcCCCC
Q 032483 10 HRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHP 87 (139)
Q Consensus 10 srG~gFV~F~~~~~a~~Ai~--~~~~i~gr~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 87 (139)
+||||||+|.+.++|++||+ ++..+.|++|.|.++..+....+.......+. .. . .. ..+.+.....
T Consensus 41 ~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~~~~~p~~~~~~~~~~---~~-~----~~--~~~~~~~r~~- 109 (205)
T 3tyt_A 41 KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQPAIMPGQSYGLEDGS---CS-Y----KD--FSESRNNRFS- 109 (205)
T ss_dssp STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCSCCCCCSCCBCTTSC---BS-E----EE--CTTCTTCSCS-
T ss_pred CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccCCccCCCcccccccCC---cc-c----cc--cCCCcccccc-
Confidence 58999999999999999998 47899999999999864322110000000000 00 0 00 0000000000
Q ss_pred CCCCCCCCCCCCCCceeEEeCCCCCCCHHHHHHHHhcCcce--eEEEEeccC
Q 032483 88 GSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRI--LDVYVPKVR 137 (139)
Q Consensus 88 ~~~~~~~~~~~~~~~~lfV~nL~~~~t~~~L~~~F~~fG~v--~~~~i~~d~ 137 (139)
.+..........+.++|||+|||+++||++|+++|++||.| .+++|+.|+
T Consensus 110 ~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~ 161 (205)
T 3tyt_A 110 TPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK 161 (205)
T ss_dssp SHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC
T ss_pred CcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC
Confidence 00000000012346899999999999999999999999999 899998874
No 16
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.76 E-value=1e-18 Score=115.46 Aligned_cols=96 Identities=22% Similarity=0.266 Sum_probs=64.1
Q ss_pred CCccceEEEEECCHHHHHHHHHcC---cccCCcEEEEeecCCCCCCCCCCccCCCCCCCCCCCccchhhhcccCCCCCcC
Q 032483 8 KAHRGIGFITFASADSVENLMVDT---HELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLY 84 (139)
Q Consensus 8 g~srG~gFV~F~~~~~a~~Ai~~~---~~i~gr~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 84 (139)
.+++|||||+|.+.++|++|++.. ..++|... +..............
T Consensus 10 ~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~----------------------------- 59 (158)
T 2kn4_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWT-YDDATKTFTVTEGSH----------------------------- 59 (158)
T ss_dssp SSCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEE-EETTTTEEEEECCCC-----------------------------
T ss_pred ccccchhHHHHHHHHhHHHHHHhhcccCCCCCccc-ccCcccccccccccc-----------------------------
Confidence 379999999999999999999742 33444332 221111000000000
Q ss_pred CCCCCCCCCCCCCCCCCceeEEeCCCCCCCHHHHHHHHhcCcceeEEEEeccCCC
Q 032483 85 DHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKVRQH 139 (139)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~lfV~nL~~~~t~~~L~~~F~~fG~v~~~~i~~d~~~ 139 (139)
...........++|||+|||+++++++|+++|++||.|.+|.|++|+.|
T Consensus 60 ------~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~ 108 (158)
T 2kn4_A 60 ------HHHHHMDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYT 108 (158)
T ss_dssp ------CSSCCCCCCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSC
T ss_pred ------ccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCC
Confidence 0000001344689999999999999999999999999999999998753
No 17
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.75 E-value=6.3e-18 Score=120.06 Aligned_cols=76 Identities=28% Similarity=0.322 Sum_probs=69.1
Q ss_pred CCccceEEEEECCHHHHHHHHH--cCcccCCcEEEEeecCCCCCCCCCCccCCCCCCCCCCCccchhhhcccCCCCCcCC
Q 032483 8 KAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYD 85 (139)
Q Consensus 8 g~srG~gFV~F~~~~~a~~Ai~--~~~~i~gr~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 85 (139)
+++||||||+|.+.++|++||. ++..|.|+.|.|.++.+
T Consensus 55 ~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~--------------------------------------- 95 (261)
T 3sde_A 55 NRDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATH--------------------------------------- 95 (261)
T ss_dssp ETTTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCC---------------------------------------
T ss_pred eCCCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeeccc---------------------------------------
Confidence 4679999999999999999998 47889999999998642
Q ss_pred CCCCCCCCCCCCCCCCceeEEeCCCCCCCHHHHHHHHhcCcceeEEEEeccC
Q 032483 86 HPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKVR 137 (139)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~lfV~nL~~~~t~~~L~~~F~~fG~v~~~~i~~d~ 137 (139)
..+|||+|||+.+|+++|+++|++||.|.+|.|++|.
T Consensus 96 ---------------~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~ 132 (261)
T 3sde_A 96 ---------------GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDD 132 (261)
T ss_dssp ---------------SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET
T ss_pred ---------------CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCC
Confidence 3589999999999999999999999999999999884
No 18
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.74 E-value=9.4e-18 Score=120.08 Aligned_cols=77 Identities=16% Similarity=0.304 Sum_probs=69.3
Q ss_pred CCccceEEEEECCHHHHHHHHH--cCcccCCcEEEEeecCCCCCCCCCCccCCCCCCCCCCCccchhhhcccCCCCCcCC
Q 032483 8 KAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYD 85 (139)
Q Consensus 8 g~srG~gFV~F~~~~~a~~Ai~--~~~~i~gr~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 85 (139)
++++|||||+|.+.++|++|+. ++..+.|++|.|.++.
T Consensus 54 ~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~---------------------------------------- 93 (284)
T 3smz_A 54 DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQP---------------------------------------- 93 (284)
T ss_dssp ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC----------------------------------------
T ss_pred ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecC----------------------------------------
Confidence 6789999999999999999998 4678999999998632
Q ss_pred CCCCCCCCCCCCCCCCceeEEeCCCCCCCHHHHHHHHhcCcceeEEEEeccCC
Q 032483 86 HPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKVRQ 138 (139)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~lfV~nL~~~~t~~~L~~~F~~fG~v~~~~i~~d~~ 138 (139)
..++|||+|||+.+++++|+++|++||.|..+.|++|+.
T Consensus 94 --------------~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~ 132 (284)
T 3smz_A 94 --------------TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSER 132 (284)
T ss_dssp --------------CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT
T ss_pred --------------CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCC
Confidence 136899999999999999999999999999999998864
No 19
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.74 E-value=1.6e-17 Score=113.07 Aligned_cols=112 Identities=17% Similarity=0.289 Sum_probs=72.5
Q ss_pred cceEEEEECCHHHHHHHHH--cCcccCCcEEEEeecCCCCCCCCCCccCCCCCCCCCCCccchhhhcccCCCCCc-CCCC
Q 032483 11 RGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTL-YDHP 87 (139)
Q Consensus 11 rG~gFV~F~~~~~a~~Ai~--~~~~i~gr~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~ 87 (139)
+|||||+|.+.++|++||. ++..++|++|.|.++.++.............. .... .+.+.. ...+
T Consensus 41 ~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~---~~~~---------~~~~~~r~~~~ 108 (198)
T 1qm9_A 41 KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNVQLPREGQEDQGL---TKDY---------GNSPLHRFKKP 108 (198)
T ss_dssp SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCCSCCCSSSSSSSSSC---EEES---------SCCCTTSSSSC
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCCCcCCCCcCCccccc---cccc---------cCCchhhccCc
Confidence 8999999999999999998 47889999999999876532211100000000 0000 000000 0000
Q ss_pred CCCCCCCCCCCCCCceeEEeCCCCCCCHHHHHHHHhcCc-ceeEEEEecc
Q 032483 88 GSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFG-RILDVYVPKV 136 (139)
Q Consensus 88 ~~~~~~~~~~~~~~~~lfV~nL~~~~t~~~L~~~F~~fG-~v~~~~i~~d 136 (139)
.. ........+.++|||+|||+.+++++|+++|++|| .|.+|.|+.+
T Consensus 109 ~~--~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~ 156 (198)
T 1qm9_A 109 GS--KNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK 156 (198)
T ss_dssp CC--CCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST
T ss_pred cc--cccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC
Confidence 00 00011134478999999999999999999999999 9999999764
No 20
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.74 E-value=2.6e-17 Score=114.80 Aligned_cols=111 Identities=16% Similarity=0.260 Sum_probs=71.5
Q ss_pred cceEEEEECCHHHHHHHHH--cCcccCCcEEEEeecCCCCCCCCCCccCCCCCCCCCCCccchhhhcccCCCCC-cCCCC
Q 032483 11 RGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPT-LYDHP 87 (139)
Q Consensus 11 rG~gFV~F~~~~~a~~Ai~--~~~~i~gr~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~ 87 (139)
+|||||+|.+.++|++||+ ++..+.|++|.|.++.++.............. ... ....+. ....+
T Consensus 72 ~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~---~~~---------~~~~~~~~~~~~ 139 (229)
T 2adc_A 72 KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNVQLPREGQEDQGL---TKD---------YGNSPLHRFKKP 139 (229)
T ss_dssp SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSCCCCCCCCSSSSTTTT---EEE---------CTTCSSCCCCST
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCccccCcccccccccc---ccc---------cccCcccccCCc
Confidence 8999999999999999998 47889999999999876532211100000000 000 000000 00000
Q ss_pred CCCCCCCCCCCCCCceeEEeCCCCCCCHHHHHHHHhcCc-ceeEEEEec
Q 032483 88 GSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFG-RILDVYVPK 135 (139)
Q Consensus 88 ~~~~~~~~~~~~~~~~lfV~nL~~~~t~~~L~~~F~~fG-~v~~~~i~~ 135 (139)
... .......+.++|||+|||+.+++++|+++|++|| .|.+|.|+.
T Consensus 140 ~~~--~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~ 186 (229)
T 2adc_A 140 GSK--NFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQ 186 (229)
T ss_dssp TSG--GGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECS
T ss_pred ccc--ccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEE
Confidence 000 0001134478999999999999999999999999 999999965
No 21
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.70 E-value=2.9e-17 Score=117.98 Aligned_cols=79 Identities=16% Similarity=0.307 Sum_probs=66.9
Q ss_pred CCCCCCCCccceEEEEECCHHHHHHHHH-cCcccCCcEEEEeecCCCCCCCCCCccCCCCCCCCCCCccchhhhcccCCC
Q 032483 2 PKDQGSKAHRGIGFITFASADSVENLMV-DTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGA 80 (139)
Q Consensus 2 ~~d~~tg~srG~gFV~F~~~~~a~~Ai~-~~~~i~gr~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 80 (139)
++|+.+ ++|||||+|.+.++|++||+ ++..++|++|.|.++.
T Consensus 74 ~~~~~~--~~g~afV~f~~~~~A~~A~~~~~~~~~g~~i~v~~~~----------------------------------- 116 (292)
T 2ghp_A 74 ADSLKK--NFRFARIEFARYDGALAAITKTHKVVGQNEIIVSHLT----------------------------------- 116 (292)
T ss_dssp EECTTS--SSEEEEEEESSHHHHHHHHTTTTCEETTEECEEEECC-----------------------------------
T ss_pred EECCCC--CcEEEEEEECCHHHHHHHHHhCCcEeCCcEEEEEECC-----------------------------------
Confidence 345433 68999999999999999997 3688999999998642
Q ss_pred CCcCCCCCCCCCCCCCCCCCCceeEEeCCCCCCCHHHHHHHHhcCc-ceeEEEEeccC
Q 032483 81 PTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFG-RILDVYVPKVR 137 (139)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~lfV~nL~~~~t~~~L~~~F~~fG-~v~~~~i~~d~ 137 (139)
.++|||+|||+.+++++|+++|++|| .|..|.|++|+
T Consensus 117 --------------------~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~ 154 (292)
T 2ghp_A 117 --------------------ECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLR 154 (292)
T ss_dssp --------------------SCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC---
T ss_pred --------------------CCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCC
Confidence 46899999999999999999999999 99999999876
No 22
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.66 E-value=1.6e-16 Score=104.17 Aligned_cols=97 Identities=20% Similarity=0.251 Sum_probs=71.5
Q ss_pred CCCccceEEEEECCHHHHHHHHHc---CcccCCcEEEEeecCCCCCCCCCCccCCCCCCCCCCCccchhhhcccCCCCCc
Q 032483 7 SKAHRGIGFITFASADSVENLMVD---THELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTL 83 (139)
Q Consensus 7 tg~srG~gFV~F~~~~~a~~Ai~~---~~~i~gr~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 83 (139)
....+|+++|+|.+.++|++|+++ +..++| .|.+.++..+..........
T Consensus 9 g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~-------------------------- 61 (150)
T 2i2y_A 9 GKTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHH-------------------------- 61 (150)
T ss_dssp CSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSC--------------------------
T ss_pred cccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccccc--------------------------
Confidence 456799999999999999999974 578999 99998775432110000000
Q ss_pred CCCCCCCCCCCCCCCCCCceeEEeCCCCCCCHHHHHHHHhcCcceeEEEEecc
Q 032483 84 YDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKV 136 (139)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~lfV~nL~~~~t~~~L~~~F~~fG~v~~~~i~~d 136 (139)
............++|||+|||+.+++++|+++|++||.|.+|+|++|
T Consensus 62 ------~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~ 108 (150)
T 2i2y_A 62 ------HHHMHRDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN 108 (150)
T ss_dssp ------CCCSCSSSSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS
T ss_pred ------cccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC
Confidence 00000111345789999999999999999999999999999999987
No 23
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.62 E-value=1.6e-16 Score=99.94 Aligned_cols=46 Identities=22% Similarity=0.433 Sum_probs=39.1
Q ss_pred CCCCCCCCccceEEEEECCHHHHHHHHHc--CcccCCcEEEEeecCCCCC
Q 032483 2 PKDQGSKAHRGIGFITFASADSVENLMVD--THELGGSTVVVDRATPKED 49 (139)
Q Consensus 2 ~~d~~tg~srG~gFV~F~~~~~a~~Ai~~--~~~i~gr~i~v~~~~~~~~ 49 (139)
++|+ +.+||||||+|.+.++|++||+. ++.|+|++|.|.++.++..
T Consensus 38 ~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~~~ 85 (115)
T 4f25_A 38 VCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKE 85 (115)
T ss_dssp EEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCCCC
T ss_pred eecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCccc
Confidence 4553 45899999999999999999984 6899999999999876643
No 24
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.50 E-value=4.5e-14 Score=85.11 Aligned_cols=49 Identities=20% Similarity=0.415 Sum_probs=43.9
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHHc---CcccCCcEEEEeecCCCCC
Q 032483 1 MPKDQGSKAHRGIGFITFASADSVENLMVD---THELGGSTVVVDRATPKED 49 (139)
Q Consensus 1 i~~d~~tg~srG~gFV~F~~~~~a~~Ai~~---~~~i~gr~i~v~~~~~~~~ 49 (139)
|++|+.||++||||||+|.+.++|++||+. ...++||+|.|.++.|+..
T Consensus 34 i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~~~~~ 85 (91)
T 2lxi_A 34 LMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSDPKPK 85 (91)
T ss_dssp SSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECCCSCCC
T ss_pred EEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEcCCCCC
Confidence 588999999999999999999999999985 3579999999999987754
No 25
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.44 E-value=1.6e-13 Score=83.44 Aligned_cols=46 Identities=28% Similarity=0.463 Sum_probs=41.2
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHHc--C----cccCCcEEEEeecCC
Q 032483 1 MPKDQGSKAHRGIGFITFASADSVENLMVD--T----HELGGSTVVVDRATP 46 (139)
Q Consensus 1 i~~d~~tg~srG~gFV~F~~~~~a~~Ai~~--~----~~i~gr~i~v~~~~~ 46 (139)
|++|+.||+|||||||+|.+.++|++||+. + +.|+||+|.|++|.+
T Consensus 43 i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~V~~Aks 94 (95)
T 2lkz_A 43 LIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIGVDFAKS 94 (95)
T ss_dssp CCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEEEEEECCC
T ss_pred EEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEEEEEEccC
Confidence 579999999999999999999999999984 2 369999999999863
No 26
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.41 E-value=1.6e-13 Score=83.91 Aligned_cols=46 Identities=24% Similarity=0.404 Sum_probs=42.3
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHHc--CcccCCcEEEEeecCC
Q 032483 1 MPKDQGSKAHRGIGFITFASADSVENLMVD--THELGGSTVVVDRATP 46 (139)
Q Consensus 1 i~~d~~tg~srG~gFV~F~~~~~a~~Ai~~--~~~i~gr~i~v~~~~~ 46 (139)
|++|+.||++||||||+|.+.++|++||+. +..|+|++|.|++|.|
T Consensus 51 i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~AkP 98 (99)
T 4fxv_A 51 LIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARP 98 (99)
T ss_dssp EEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCB
T ss_pred eeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEeeC
Confidence 467899999999999999999999999984 7899999999999875
No 27
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=4.5e-13 Score=82.18 Aligned_cols=51 Identities=20% Similarity=0.352 Sum_probs=46.2
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHHcCcccCCcEEEEeecCCCCCCC
Q 032483 1 MPKDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDF 51 (139)
Q Consensus 1 i~~d~~tg~srG~gFV~F~~~~~a~~Ai~~~~~i~gr~i~v~~~~~~~~~~ 51 (139)
|++|+.||++||||||+|.+.++|++||.+++.|+|+.|.|+++.++.+..
T Consensus 47 i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~g~~l~v~~a~~~~~~~ 97 (103)
T 2cqg_A 47 VKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNSKQSQD 97 (103)
T ss_dssp EEECSSSCSEEEEEEEEESSHHHHHHHHHSCEEETTEEEEEECCCTTCCCC
T ss_pred EEecCCCCCccceEEEEECCHHHHHHHHHcCCeeCCeEEEEEecCCCCcCC
Confidence 467889999999999999999999999998899999999999998876543
No 28
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.38 E-value=7.7e-13 Score=80.87 Aligned_cols=40 Identities=28% Similarity=0.478 Sum_probs=37.2
Q ss_pred CCceeEEeCCCCCCCHHHHHHHHhcCcceeEEEEeccCCC
Q 032483 100 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKVRQH 139 (139)
Q Consensus 100 ~~~~lfV~nL~~~~t~~~L~~~F~~fG~v~~~~i~~d~~~ 139 (139)
.+++|||+|||+++|+++|+++|++||+|.+|+|++|+.|
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~t 57 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVA 57 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCC
Confidence 3679999999999999999999999999999999998764
No 29
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.36 E-value=1.9e-13 Score=82.08 Aligned_cols=48 Identities=23% Similarity=0.316 Sum_probs=39.6
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHHc--CcccCCcEEEEeecCCCC
Q 032483 1 MPKDQGSKAHRGIGFITFASADSVENLMVD--THELGGSTVVVDRATPKE 48 (139)
Q Consensus 1 i~~d~~tg~srG~gFV~F~~~~~a~~Ai~~--~~~i~gr~i~v~~~~~~~ 48 (139)
|++|+.||++||||||+|.+.++|++||+. +..++||.|.|+++.+..
T Consensus 35 i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~~~~ 84 (90)
T 3p5t_L 35 FFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSNKLE 84 (90)
T ss_dssp EEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC----
T ss_pred EEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECCCCc
Confidence 467889999999999999999999999984 689999999999987654
No 30
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.34 E-value=3.2e-12 Score=77.79 Aligned_cols=49 Identities=37% Similarity=0.613 Sum_probs=44.4
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHH-cCcccCCcEEEEeecCCCCC
Q 032483 1 MPKDQGSKAHRGIGFITFASADSVENLMV-DTHELGGSTVVVDRATPKED 49 (139)
Q Consensus 1 i~~d~~tg~srG~gFV~F~~~~~a~~Ai~-~~~~i~gr~i~v~~~~~~~~ 49 (139)
|++|+.+|++||||||+|.+.++|++||+ +++.|+|++|.|+++.++..
T Consensus 42 i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~l~V~~a~~~~~ 91 (99)
T 2dgs_A 42 MIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEPRDS 91 (99)
T ss_dssp ECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCBCEEEECCCCCC
T ss_pred EEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCeEEEEEECCCCcc
Confidence 46888999999999999999999999999 56889999999999987654
No 31
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.33 E-value=9.4e-13 Score=81.99 Aligned_cols=47 Identities=11% Similarity=0.200 Sum_probs=42.6
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHHc--CcccCCcEEEEeecCCC
Q 032483 1 MPKDQGSKAHRGIGFITFASADSVENLMVD--THELGGSTVVVDRATPK 47 (139)
Q Consensus 1 i~~d~~tg~srG~gFV~F~~~~~a~~Ai~~--~~~i~gr~i~v~~~~~~ 47 (139)
|++|+.||+|||||||+|.+.++|++||+. +..|+|+.|.|.++...
T Consensus 38 i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~~~ 86 (110)
T 3s8s_A 38 ILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDIKG 86 (110)
T ss_dssp EEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSTT
T ss_pred EEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 468999999999999999999999999994 68999999999998644
No 32
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.33 E-value=1.5e-12 Score=80.31 Aligned_cols=39 Identities=18% Similarity=0.321 Sum_probs=36.5
Q ss_pred CCCceeEEeCCCCCCCHHHHHHHHhcCcceeEEEEeccC
Q 032483 99 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKVR 137 (139)
Q Consensus 99 ~~~~~lfV~nL~~~~t~~~L~~~F~~fG~v~~~~i~~d~ 137 (139)
...++|||+|||+++|+++|+++|++||.|.+|.|++|+
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~k 52 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGK 52 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETTT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCC
Confidence 447899999999999999999999999999999999875
No 33
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.33 E-value=3.2e-12 Score=79.34 Aligned_cols=49 Identities=31% Similarity=0.549 Sum_probs=44.3
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHHc-CcccCCcEEEEeecCCCCC
Q 032483 1 MPKDQGSKAHRGIGFITFASADSVENLMVD-THELGGSTVVVDRATPKED 49 (139)
Q Consensus 1 i~~d~~tg~srG~gFV~F~~~~~a~~Ai~~-~~~i~gr~i~v~~~~~~~~ 49 (139)
|++|+.||++||||||+|.+.++|++||+. .+.++|+.|.|+++.++..
T Consensus 57 i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~V~~a~~~~~ 106 (109)
T 2rs2_A 57 VMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRA 106 (109)
T ss_dssp ECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEEEEEECCCCCC
T ss_pred EEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEEEEEccCCCC
Confidence 468899999999999999999999999996 5889999999999987654
No 34
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.32 E-value=7.6e-12 Score=76.06 Aligned_cols=49 Identities=22% Similarity=0.345 Sum_probs=44.2
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHHc--CcccCCcEEEEeecCCCCC
Q 032483 1 MPKDQGSKAHRGIGFITFASADSVENLMVD--THELGGSTVVVDRATPKED 49 (139)
Q Consensus 1 i~~d~~tg~srG~gFV~F~~~~~a~~Ai~~--~~~i~gr~i~v~~~~~~~~ 49 (139)
|++|+.+|+++|||||+|.+.++|++||+. +..++|++|.|.++.++..
T Consensus 40 i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 90 (99)
T 1whw_A 40 YPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPSTIKKE 90 (99)
T ss_dssp CCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEECCCCST
T ss_pred EEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCCcc
Confidence 578888999999999999999999999974 6889999999999987754
No 35
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.32 E-value=1.4e-12 Score=84.06 Aligned_cols=41 Identities=32% Similarity=0.562 Sum_probs=37.6
Q ss_pred CCCCceeEEeCCCCCCCHHHHHHHHhcCcceeEEEEeccCC
Q 032483 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKVRQ 138 (139)
Q Consensus 98 ~~~~~~lfV~nL~~~~t~~~L~~~F~~fG~v~~~~i~~d~~ 138 (139)
....++|||+|||+.+++++|+++|++||.|..|.|++|+.
T Consensus 44 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~ 84 (135)
T 2lea_A 44 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRY 84 (135)
T ss_dssp GGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCC
Confidence 44578999999999999999999999999999999998864
No 36
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.32 E-value=5.2e-13 Score=81.69 Aligned_cols=47 Identities=13% Similarity=0.261 Sum_probs=43.0
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHH--cCcccCC-cEEEEeecCCC
Q 032483 1 MPKDQGSKAHRGIGFITFASADSVENLMV--DTHELGG-STVVVDRATPK 47 (139)
Q Consensus 1 i~~d~~tg~srG~gFV~F~~~~~a~~Ai~--~~~~i~g-r~i~v~~~~~~ 47 (139)
|++|+.||++||||||+|.+.++|++||+ ++..++| +.|.|.++.++
T Consensus 44 i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l~V~~a~~~ 93 (100)
T 3ns6_A 44 FPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRLFLYTMKDV 93 (100)
T ss_dssp CCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEESHHH
T ss_pred EEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeEEEEEECchh
Confidence 67899999999999999999999999998 4789999 99999998764
No 37
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.31 E-value=4.8e-12 Score=76.49 Aligned_cols=49 Identities=24% Similarity=0.371 Sum_probs=44.1
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHHc--CcccCCcEEEEeecCCCCC
Q 032483 1 MPKDQGSKAHRGIGFITFASADSVENLMVD--THELGGSTVVVDRATPKED 49 (139)
Q Consensus 1 i~~d~~tg~srG~gFV~F~~~~~a~~Ai~~--~~~i~gr~i~v~~~~~~~~ 49 (139)
|++|+.+|+++|||||+|.+.++|++||.. ++.|+|++|.|+++.++..
T Consensus 38 i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 88 (96)
T 1x5t_A 38 IMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDS 88 (96)
T ss_dssp ECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEESCCCCC
T ss_pred EEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEecccCC
Confidence 467889999999999999999999999994 6889999999999987644
No 38
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.31 E-value=7.6e-12 Score=77.54 Aligned_cols=50 Identities=16% Similarity=0.371 Sum_probs=44.9
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHH--c------CcccCCcEEEEeecCCCCCC
Q 032483 1 MPKDQGSKAHRGIGFITFASADSVENLMV--D------THELGGSTVVVDRATPKEDD 50 (139)
Q Consensus 1 i~~d~~tg~srG~gFV~F~~~~~a~~Ai~--~------~~~i~gr~i~v~~~~~~~~~ 50 (139)
|++|+.||+++|||||+|.+.++|++||+ + ++.|+|+.|.|+++.++...
T Consensus 47 i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~l~v~~a~~~~~~ 104 (111)
T 1x4h_A 47 VVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQLKVDLAVTRDEA 104 (111)
T ss_dssp CCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCEEEEECCCCCCCC
T ss_pred EEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEEEEEEECCCCccC
Confidence 57899999999999999999999999998 3 67899999999999877554
No 39
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.30 E-value=4.6e-12 Score=78.86 Aligned_cols=41 Identities=15% Similarity=0.182 Sum_probs=37.9
Q ss_pred CCCceeEEeCCCCCCCHHHHHHHHhcCcceeEEEEeccCCC
Q 032483 99 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKVRQH 139 (139)
Q Consensus 99 ~~~~~lfV~nL~~~~t~~~L~~~F~~fG~v~~~~i~~d~~~ 139 (139)
.+.++|||+|||+++++++|+++|++||.|.+|.|++|+.|
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t 44 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRT 44 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTT
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCC
Confidence 34689999999999999999999999999999999999864
No 40
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.30 E-value=2.8e-12 Score=75.50 Aligned_cols=48 Identities=29% Similarity=0.492 Sum_probs=43.2
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHHc--CcccCCcEEEEeecCCCC
Q 032483 1 MPKDQGSKAHRGIGFITFASADSVENLMVD--THELGGSTVVVDRATPKE 48 (139)
Q Consensus 1 i~~d~~tg~srG~gFV~F~~~~~a~~Ai~~--~~~i~gr~i~v~~~~~~~ 48 (139)
|++|+.+|+++|||||+|.+.++|++|++. +..++|++|.|+++.+++
T Consensus 33 i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~ 82 (83)
T 3md1_A 33 VMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKLE 82 (83)
T ss_dssp EEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred EEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcCC
Confidence 357889999999999999999999999994 688999999999998763
No 41
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.29 E-value=4.8e-12 Score=79.19 Aligned_cols=50 Identities=36% Similarity=0.626 Sum_probs=45.0
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHHc-CcccCCcEEEEeecCCCCCC
Q 032483 1 MPKDQGSKAHRGIGFITFASADSVENLMVD-THELGGSTVVVDRATPKEDD 50 (139)
Q Consensus 1 i~~d~~tg~srG~gFV~F~~~~~a~~Ai~~-~~~i~gr~i~v~~~~~~~~~ 50 (139)
|++|+.||++||||||+|.+.++|++||+. ++.|+|+.|.|+++.++...
T Consensus 59 i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a~~~~~~ 109 (116)
T 1x4b_A 59 VMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREES 109 (116)
T ss_dssp EECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEEEEEECCSSCCCC
T ss_pred EEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEEEEEEECCCCccC
Confidence 467889999999999999999999999995 68899999999999887554
No 42
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.29 E-value=3.1e-12 Score=78.16 Aligned_cols=39 Identities=23% Similarity=0.351 Sum_probs=35.6
Q ss_pred ccceEEEEECCHHHHHHHHHc--CcccCCcEEEEeecCCCC
Q 032483 10 HRGIGFITFASADSVENLMVD--THELGGSTVVVDRATPKE 48 (139)
Q Consensus 10 srG~gFV~F~~~~~a~~Ai~~--~~~i~gr~i~v~~~~~~~ 48 (139)
++|||||+|.+.++|++|++. +..++|+.|.|+++.++.
T Consensus 36 ~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 76 (101)
T 2hvz_A 36 PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMP 76 (101)
T ss_dssp SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCC
T ss_pred CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCC
Confidence 899999999999999999994 678999999999998764
No 43
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.29 E-value=1.3e-11 Score=77.13 Aligned_cols=42 Identities=43% Similarity=0.623 Sum_probs=38.6
Q ss_pred CCCCceeEEeCCCCCCCHHHHHHHHhcCcceeEEEEeccCCC
Q 032483 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKVRQH 139 (139)
Q Consensus 98 ~~~~~~lfV~nL~~~~t~~~L~~~F~~fG~v~~~~i~~d~~~ 139 (139)
....++|||+|||+.+++++|+++|++||.|..|+|++|+.|
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~ 55 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQT 55 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCC
Confidence 456799999999999999999999999999999999998753
No 44
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.29 E-value=9.2e-12 Score=76.25 Aligned_cols=41 Identities=29% Similarity=0.528 Sum_probs=38.1
Q ss_pred CCCCceeEEeCCCCCCCHHHHHHHHhcCcceeEEEEeccCC
Q 032483 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKVRQ 138 (139)
Q Consensus 98 ~~~~~~lfV~nL~~~~t~~~L~~~F~~fG~v~~~~i~~d~~ 138 (139)
....++|||+|||+.+++++|+++|++||.|..|.|++|+.
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~ 50 (103)
T 2dnm_A 10 VDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPH 50 (103)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSS
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCC
Confidence 45578999999999999999999999999999999999865
No 45
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.29 E-value=3.5e-12 Score=79.86 Aligned_cols=38 Identities=29% Similarity=0.388 Sum_probs=35.8
Q ss_pred CceeEEeCCCCCCCHHHHHHHHhcCcceeEEEEeccCC
Q 032483 101 GKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKVRQ 138 (139)
Q Consensus 101 ~~~lfV~nL~~~~t~~~L~~~F~~fG~v~~~~i~~d~~ 138 (139)
..+|||+|||+++|+++|+++|++||.|.+|+|++|+.
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~ 42 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN 42 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETT
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCC
Confidence 56899999999999999999999999999999999864
No 46
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.29 E-value=3e-12 Score=74.00 Aligned_cols=44 Identities=36% Similarity=0.594 Sum_probs=39.9
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHH-cCcccCCcEEEEeec
Q 032483 1 MPKDQGSKAHRGIGFITFASADSVENLMV-DTHELGGSTVVVDRA 44 (139)
Q Consensus 1 i~~d~~tg~srG~gFV~F~~~~~a~~Ai~-~~~~i~gr~i~v~~~ 44 (139)
|++|+.+|+++|||||+|.+.++|++|++ +++.++|++|.|++|
T Consensus 31 i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 31 LMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKA 75 (75)
T ss_dssp CCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCCCEEECC
T ss_pred EEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEEEEEEeC
Confidence 57888899999999999999999999998 468899999999875
No 47
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.29 E-value=4.1e-12 Score=77.91 Aligned_cols=49 Identities=22% Similarity=0.479 Sum_probs=43.3
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHH-cCcccCCcEEEEeecCCCCC
Q 032483 1 MPKDQGSKAHRGIGFITFASADSVENLMV-DTHELGGSTVVVDRATPKED 49 (139)
Q Consensus 1 i~~d~~tg~srG~gFV~F~~~~~a~~Ai~-~~~~i~gr~i~v~~~~~~~~ 49 (139)
|++|+.||++||||||+|.+.++|++||. ++..|+|++|.|.++.++..
T Consensus 46 i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~~~~ 95 (103)
T 2dng_A 46 LVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDRSLRVDIAEGRKQ 95 (103)
T ss_dssp EEECSSSCSEEEEEEEEESSHHHHHHHGGGTTCEETTEECEEEECCCCCC
T ss_pred EeecCCCCccceEEEEEECCHHHHHHHHhhCCCeECCeEEEEEEecCCCC
Confidence 46788999999999999999999999995 36889999999999987643
No 48
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.28 E-value=3.9e-12 Score=77.79 Aligned_cols=49 Identities=27% Similarity=0.559 Sum_probs=44.1
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHH--cCcccCCcEEEEeecCCCCC
Q 032483 1 MPKDQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKED 49 (139)
Q Consensus 1 i~~d~~tg~srG~gFV~F~~~~~a~~Ai~--~~~~i~gr~i~v~~~~~~~~ 49 (139)
|++|+.+++++|||||+|.+.++|++||+ +++.|+|+.|.|.++.++.+
T Consensus 44 ~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~ 94 (102)
T 2fc8_A 44 IVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGE 94 (102)
T ss_dssp EEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCCCS
T ss_pred EEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCCCC
Confidence 45788899999999999999999999998 47899999999999987754
No 49
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.28 E-value=1.3e-11 Score=74.30 Aligned_cols=41 Identities=29% Similarity=0.556 Sum_probs=37.8
Q ss_pred CCCCceeEEeCCCCCCCHHHHHHHHhcCcceeEEEEeccCC
Q 032483 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKVRQ 138 (139)
Q Consensus 98 ~~~~~~lfV~nL~~~~t~~~L~~~F~~fG~v~~~~i~~d~~ 138 (139)
....++|||+|||+.+++++|+++|++||.|..|.|++|+.
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~ 53 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKD 53 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSS
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCC
Confidence 44578999999999999999999999999999999999865
No 50
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.28 E-value=8e-12 Score=74.20 Aligned_cols=42 Identities=29% Similarity=0.605 Sum_probs=38.2
Q ss_pred CCCCceeEEeCCCCCCCHHHHHHHHhcCcceeEEEEeccCCC
Q 032483 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKVRQH 139 (139)
Q Consensus 98 ~~~~~~lfV~nL~~~~t~~~L~~~F~~fG~v~~~~i~~d~~~ 139 (139)
....++|||+|||+.+++++|+++|++||.|.+|.|++|+.|
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~ 49 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNT 49 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCC
Confidence 345789999999999999999999999999999999998753
No 51
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.28 E-value=1.1e-11 Score=77.44 Aligned_cols=50 Identities=28% Similarity=0.419 Sum_probs=44.1
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHHc--CcccCCcEEEEeecCCCCCC
Q 032483 1 MPKDQGSKAHRGIGFITFASADSVENLMVD--THELGGSTVVVDRATPKEDD 50 (139)
Q Consensus 1 i~~d~~tg~srG~gFV~F~~~~~a~~Ai~~--~~~i~gr~i~v~~~~~~~~~ 50 (139)
|++|+.+|+++|||||+|.+.++|++||+. ++.|+|+.|.|.++.++...
T Consensus 47 i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 98 (115)
T 2dgo_A 47 VVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPA 98 (115)
T ss_dssp EEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESSCCCCC
T ss_pred EEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEccCCCCC
Confidence 457888999999999999999999999984 68899999999999876543
No 52
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.28 E-value=9.7e-12 Score=76.25 Aligned_cols=40 Identities=18% Similarity=0.335 Sum_probs=36.8
Q ss_pred CCCCceeEEeCCCCCCCHHHHHHHHhcCcceeEEEEeccC
Q 032483 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKVR 137 (139)
Q Consensus 98 ~~~~~~lfV~nL~~~~t~~~L~~~F~~fG~v~~~~i~~d~ 137 (139)
..+.++|||+|||+++++++|+++|++||.|.+|.|++++
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~k 51 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGK 51 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETTT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECCC
Confidence 4557899999999999999999999999999999998875
No 53
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.28 E-value=1e-11 Score=75.87 Aligned_cols=49 Identities=31% Similarity=0.497 Sum_probs=44.1
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHH--cCcccCCcEEEEeecCCCCC
Q 032483 1 MPKDQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKED 49 (139)
Q Consensus 1 i~~d~~tg~srG~gFV~F~~~~~a~~Ai~--~~~~i~gr~i~v~~~~~~~~ 49 (139)
|++|+.+++++|||||+|.+.++|++||+ +++.|+|++|.|.++.++..
T Consensus 44 i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~ 94 (102)
T 2cqb_A 44 IPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAKPMRI 94 (102)
T ss_dssp CCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEECCCCCC
T ss_pred EEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeCCCCCC
Confidence 57889999999999999999999999998 46889999999999987643
No 54
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.28 E-value=1.1e-11 Score=76.09 Aligned_cols=49 Identities=29% Similarity=0.527 Sum_probs=44.2
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHHc--CcccCCcEEEEeecCCCCC
Q 032483 1 MPKDQGSKAHRGIGFITFASADSVENLMVD--THELGGSTVVVDRATPKED 49 (139)
Q Consensus 1 i~~d~~tg~srG~gFV~F~~~~~a~~Ai~~--~~~i~gr~i~v~~~~~~~~ 49 (139)
|++|+.++++||||||+|.+.++|++||+. ++.|+|++|.|+++.++..
T Consensus 47 i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 97 (105)
T 1x5u_A 47 MPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKASAHNK 97 (105)
T ss_dssp CCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEETTTTSC
T ss_pred EEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCCCc
Confidence 578888999999999999999999999994 6889999999999987644
No 55
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.28 E-value=1.1e-11 Score=75.35 Aligned_cols=41 Identities=32% Similarity=0.617 Sum_probs=37.8
Q ss_pred CCCCceeEEeCCCCCCCHHHHHHHHhcCcceeEEEEeccCC
Q 032483 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKVRQ 138 (139)
Q Consensus 98 ~~~~~~lfV~nL~~~~t~~~L~~~F~~fG~v~~~~i~~d~~ 138 (139)
....++|||+|||+.+++++|+++|++||.|..|.|++|+.
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~ 47 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAE 47 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCC
Confidence 34578999999999999999999999999999999999865
No 56
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.28 E-value=1.2e-11 Score=75.86 Aligned_cols=49 Identities=24% Similarity=0.541 Sum_probs=43.6
Q ss_pred CCCCCCC-CCccceEEEEECCHHHHHHHHH-cCcccCCcEEEEeecCCCCC
Q 032483 1 MPKDQGS-KAHRGIGFITFASADSVENLMV-DTHELGGSTVVVDRATPKED 49 (139)
Q Consensus 1 i~~d~~t-g~srG~gFV~F~~~~~a~~Ai~-~~~~i~gr~i~v~~~~~~~~ 49 (139)
|++|+.| |+++|||||+|.+.++|++||. ++..|+|+.|.|+++.++..
T Consensus 46 i~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~~~~ 96 (104)
T 1wi8_A 46 LPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNKRIRVDVADQAQD 96 (104)
T ss_dssp CCBCSSCTTSBCSCEEEEESSHHHHHHHHGGGTCEETTEECEEEECCCCCC
T ss_pred EecCCCCCCCcCeEEEEEECCHHHHHHHHhcCCCEeCCcEEEEEEccCCCC
Confidence 5788888 9999999999999999999995 36889999999999987654
No 57
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.27 E-value=8.9e-12 Score=75.42 Aligned_cols=49 Identities=18% Similarity=0.266 Sum_probs=44.1
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHH--cCcccCCcEEEEeecCCCCC
Q 032483 1 MPKDQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKED 49 (139)
Q Consensus 1 i~~d~~tg~srG~gFV~F~~~~~a~~Ai~--~~~~i~gr~i~v~~~~~~~~ 49 (139)
|++|+.+|+++|||||+|.+.++|++|++ ++..++|+.|.|+++.++..
T Consensus 34 i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 84 (96)
T 2x1f_A 34 MMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSNSDI 84 (96)
T ss_dssp CCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCSSG
T ss_pred EEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCCCCC
Confidence 57888999999999999999999999998 47899999999999987643
No 58
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.27 E-value=2e-11 Score=76.31 Aligned_cols=49 Identities=24% Similarity=0.331 Sum_probs=43.2
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHHc-CcccCCcEEEEeecCCCCC
Q 032483 1 MPKDQGSKAHRGIGFITFASADSVENLMVD-THELGGSTVVVDRATPKED 49 (139)
Q Consensus 1 i~~d~~tg~srG~gFV~F~~~~~a~~Ai~~-~~~i~gr~i~v~~~~~~~~ 49 (139)
|++|+.|+++||||||+|.+.++|++||+. ...|+|+.|.|+++.++..
T Consensus 49 i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a~~~~~ 98 (116)
T 2cqd_A 49 VITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNLAYLGAK 98 (116)
T ss_dssp ESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSCEETTEECEEEESTTTCC
T ss_pred EEEcCCCCccceEEEEEECCHHHHHHHHHhCCCcCCCEEEEEEEcccCCC
Confidence 478889999999999999999999999995 3589999999999976543
No 59
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=3.7e-12 Score=78.13 Aligned_cols=51 Identities=24% Similarity=0.420 Sum_probs=43.5
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHHc--Ccc-cCCcEEEEeecCCCCCCCC
Q 032483 1 MPKDQGSKAHRGIGFITFASADSVENLMVD--THE-LGGSTVVVDRATPKEDDFR 52 (139)
Q Consensus 1 i~~d~~tg~srG~gFV~F~~~~~a~~Ai~~--~~~-i~gr~i~v~~~~~~~~~~~ 52 (139)
|++|+ +|++||||||+|.+.++|++||+. +.. ++|++|.|.++.++.....
T Consensus 42 i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~a~~~~~~~~ 95 (104)
T 2dhg_A 42 VVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPKASRVK 95 (104)
T ss_dssp EEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCBCCCCCSCCC
T ss_pred EEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEEccCCCcCCC
Confidence 45777 999999999999999999999994 567 9999999999987655433
No 60
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=9.4e-12 Score=75.03 Aligned_cols=49 Identities=29% Similarity=0.517 Sum_probs=43.8
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHH--cCcccCCcEEEEeecCCCCC
Q 032483 1 MPKDQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKED 49 (139)
Q Consensus 1 i~~d~~tg~srG~gFV~F~~~~~a~~Ai~--~~~~i~gr~i~v~~~~~~~~ 49 (139)
|++|+.|++++|||||+|.+.++|++||+ +++.++|++|.|+++.++..
T Consensus 37 i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 87 (95)
T 2dnz_A 37 LMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVTERLD 87 (95)
T ss_dssp EECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESSCCCC
T ss_pred EeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcccccC
Confidence 46788899999999999999999999999 46889999999999987643
No 61
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.27 E-value=1.1e-11 Score=77.10 Aligned_cols=49 Identities=16% Similarity=0.263 Sum_probs=44.2
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHH--cCcccCCcEEEEeecCCCCC
Q 032483 1 MPKDQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKED 49 (139)
Q Consensus 1 i~~d~~tg~srG~gFV~F~~~~~a~~Ai~--~~~~i~gr~i~v~~~~~~~~ 49 (139)
|++|+.+|++||||||+|.+.++|++||+ +++.|+|+.|.|.++.++..
T Consensus 55 i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 55 IYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLARKKPP 105 (113)
T ss_dssp CCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETTEECEEECSSCCCC
T ss_pred EEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCCCEEEEEECCCCCC
Confidence 57788999999999999999999999999 47889999999999887644
No 62
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.27 E-value=1.6e-11 Score=75.17 Aligned_cols=41 Identities=37% Similarity=0.528 Sum_probs=38.0
Q ss_pred CCCCceeEEeCCCCCCCHHHHHHHHhcCcceeEEEEeccCC
Q 032483 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKVRQ 138 (139)
Q Consensus 98 ~~~~~~lfV~nL~~~~t~~~L~~~F~~fG~v~~~~i~~d~~ 138 (139)
....++|||+|||+.+++++|+++|++||.|..|.|++|+.
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~ 52 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLK 52 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSS
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCC
Confidence 45578999999999999999999999999999999999875
No 63
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.27 E-value=9.5e-12 Score=76.02 Aligned_cols=40 Identities=20% Similarity=0.211 Sum_probs=36.7
Q ss_pred CCCCceeEEeCCCCCCCHHHHHHHHhcCcceeEEEEeccC
Q 032483 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKVR 137 (139)
Q Consensus 98 ~~~~~~lfV~nL~~~~t~~~L~~~F~~fG~v~~~~i~~d~ 137 (139)
..++++|||+|||+++|+++|+++|++||.|.+|.+++++
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~k 57 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKK 57 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETTT
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcCC
Confidence 3457899999999999999999999999999999998765
No 64
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.27 E-value=6.4e-12 Score=77.19 Aligned_cols=40 Identities=10% Similarity=0.145 Sum_probs=36.9
Q ss_pred CCCceeEEeCCCC-CCCHHHHHHHHhcCcceeEEEEeccCC
Q 032483 99 RIGKKIFVGRLPQ-EATAEDLRRYFSRFGRILDVYVPKVRQ 138 (139)
Q Consensus 99 ~~~~~lfV~nL~~-~~t~~~L~~~F~~fG~v~~~~i~~d~~ 138 (139)
.+.++|||+|||+ ++|+++|+++|++||.|.+|.|++|+.
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~kg 53 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKIN 53 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSSS
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCCC
Confidence 3478999999999 999999999999999999999998863
No 65
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.27 E-value=1.6e-11 Score=75.99 Aligned_cols=39 Identities=21% Similarity=0.307 Sum_probs=36.2
Q ss_pred CCCCceeEEeCCCCCCCHHHHHHHHhcCcceeEEEEecc
Q 032483 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKV 136 (139)
Q Consensus 98 ~~~~~~lfV~nL~~~~t~~~L~~~F~~fG~v~~~~i~~d 136 (139)
....++|||+|||+++++++|+++|++||.|..|.|+.|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~ 50 (108)
T 1x4c_A 12 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD 50 (108)
T ss_dssp CSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC
Confidence 455789999999999999999999999999999999875
No 66
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.26 E-value=1.8e-11 Score=75.42 Aligned_cols=40 Identities=20% Similarity=0.287 Sum_probs=36.6
Q ss_pred CCCCceeEEeCCCCCCCHHHHHHHHhcCcceeEEEEeccC
Q 032483 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKVR 137 (139)
Q Consensus 98 ~~~~~~lfV~nL~~~~t~~~L~~~F~~fG~v~~~~i~~d~ 137 (139)
..+.++|||+|||+++++++|+++|++||.|.+|.|++++
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~k 51 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFK 51 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETTT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECCC
Confidence 3457899999999999999999999999999999998765
No 67
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.26 E-value=9.1e-12 Score=78.50 Aligned_cols=40 Identities=18% Similarity=0.305 Sum_probs=36.9
Q ss_pred CCCCceeEEeCCCCCCCHHHHHHHHhcCcceeEEEEeccC
Q 032483 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKVR 137 (139)
Q Consensus 98 ~~~~~~lfV~nL~~~~t~~~L~~~F~~fG~v~~~~i~~d~ 137 (139)
..++++|||+|||+++|+++|+++|++||.|++|.|++|+
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~k 67 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGK 67 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGGG
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCC
Confidence 4457899999999999999999999999999999999875
No 68
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.26 E-value=1.4e-12 Score=78.49 Aligned_cols=39 Identities=23% Similarity=0.413 Sum_probs=36.2
Q ss_pred CceeEEeCCCCCCCHHHHHHHHhcCc-ceeEEEEeccCCC
Q 032483 101 GKKIFVGRLPQEATAEDLRRYFSRFG-RILDVYVPKVRQH 139 (139)
Q Consensus 101 ~~~lfV~nL~~~~t~~~L~~~F~~fG-~v~~~~i~~d~~~ 139 (139)
+++|||+|||+++|+++|+++|++|| +|.+|+|++|+.|
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t 40 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSS 40 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCC
Confidence 36899999999999999999999999 8999999999764
No 69
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.26 E-value=1.8e-11 Score=73.76 Aligned_cols=42 Identities=31% Similarity=0.278 Sum_probs=38.3
Q ss_pred CCCCceeEEeCCCCCCCHHHHHHHHhcCcceeEEEEeccCCC
Q 032483 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKVRQH 139 (139)
Q Consensus 98 ~~~~~~lfV~nL~~~~t~~~L~~~F~~fG~v~~~~i~~d~~~ 139 (139)
....++|||+|||+.+++++|+++|++||.|..|.|++|+.+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~ 53 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQS 53 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSS
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCC
Confidence 455789999999999999999999999999999999998753
No 70
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.26 E-value=2.4e-11 Score=75.84 Aligned_cols=41 Identities=32% Similarity=0.469 Sum_probs=37.7
Q ss_pred CCCCceeEEeCCCCCCCHHHHHHHHhcCcceeEEEEeccCC
Q 032483 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKVRQ 138 (139)
Q Consensus 98 ~~~~~~lfV~nL~~~~t~~~L~~~F~~fG~v~~~~i~~d~~ 138 (139)
....++|||+|||+++++++|+++|++||.|.+|+|++|+.
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~ 62 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQ 62 (115)
T ss_dssp CSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSS
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCC
Confidence 34568999999999999999999999999999999999874
No 71
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.26 E-value=3.7e-12 Score=73.59 Aligned_cols=44 Identities=32% Similarity=0.561 Sum_probs=40.2
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHHc-CcccCCcEEEEeec
Q 032483 1 MPKDQGSKAHRGIGFITFASADSVENLMVD-THELGGSTVVVDRA 44 (139)
Q Consensus 1 i~~d~~tg~srG~gFV~F~~~~~a~~Ai~~-~~~i~gr~i~v~~~ 44 (139)
|++|+.+|+++|||||+|.+.++|++||+. ++.++|+.|.|+++
T Consensus 31 i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 31 LPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCEEEC
T ss_pred EEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEC
Confidence 578899999999999999999999999995 68899999999864
No 72
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.26 E-value=2.7e-11 Score=74.83 Aligned_cols=48 Identities=23% Similarity=0.338 Sum_probs=43.0
Q ss_pred CCCCCCCccceEEEEECCHHHHHHHHHc----CcccCCcEEEEeecCCCCCC
Q 032483 3 KDQGSKAHRGIGFITFASADSVENLMVD----THELGGSTVVVDRATPKEDD 50 (139)
Q Consensus 3 ~d~~tg~srG~gFV~F~~~~~a~~Ai~~----~~~i~gr~i~v~~~~~~~~~ 50 (139)
+|+.||++||||||+|.+.++|++||.. ...++|+.|.|.++.++...
T Consensus 44 ~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V~~a~~~~~~ 95 (109)
T 2dis_A 44 SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDV 95 (109)
T ss_dssp SSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEEEESCSSCST
T ss_pred cCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEEEEcCCCCCc
Confidence 7889999999999999999999999994 36899999999999877543
No 73
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.26 E-value=4.1e-12 Score=75.37 Aligned_cols=47 Identities=30% Similarity=0.456 Sum_probs=41.2
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHHc--CcccCCcEEEEeecCCC
Q 032483 1 MPKDQGSKAHRGIGFITFASADSVENLMVD--THELGGSTVVVDRATPK 47 (139)
Q Consensus 1 i~~d~~tg~srG~gFV~F~~~~~a~~Ai~~--~~~i~gr~i~v~~~~~~ 47 (139)
|++|+.+|+++|||||+|.+.++|++|++. +..++|+.|.|+++.++
T Consensus 38 i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~k 86 (87)
T 3bs9_A 38 VVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRK 86 (87)
T ss_dssp EEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC--
T ss_pred EEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecCCC
Confidence 357888999999999999999999999994 68899999999998765
No 74
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.25 E-value=3.6e-12 Score=78.34 Aligned_cols=49 Identities=27% Similarity=0.552 Sum_probs=44.2
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHH-cCcccCCcEEEEeecCCCCC
Q 032483 1 MPKDQGSKAHRGIGFITFASADSVENLMV-DTHELGGSTVVVDRATPKED 49 (139)
Q Consensus 1 i~~d~~tg~srG~gFV~F~~~~~a~~Ai~-~~~~i~gr~i~v~~~~~~~~ 49 (139)
|++|+.+|++||||||+|.+.++|++||. +.+.|+|+.|.|+++.++..
T Consensus 48 i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~V~~a~~~~~ 97 (105)
T 2dh8_A 48 IMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPCTPRGM 97 (105)
T ss_dssp EEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETTEEEBCCCSCCSSC
T ss_pred EeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEccCCCC
Confidence 46788999999999999999999999999 57889999999999987754
No 75
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.25 E-value=1e-11 Score=76.08 Aligned_cols=48 Identities=27% Similarity=0.467 Sum_probs=43.5
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHH--cCcccCCcEEEEeecCCCC
Q 032483 1 MPKDQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKE 48 (139)
Q Consensus 1 i~~d~~tg~srG~gFV~F~~~~~a~~Ai~--~~~~i~gr~i~v~~~~~~~ 48 (139)
|++|+.||+++|||||+|.+.++|++||+ +++.|+|+.|.|+++.++.
T Consensus 45 i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~ 94 (103)
T 2dnm_A 45 IPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVARYGR 94 (103)
T ss_dssp CCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEECSSCC
T ss_pred EEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEECCcCC
Confidence 57888999999999999999999999999 4688999999999997653
No 76
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.25 E-value=1.6e-11 Score=75.46 Aligned_cols=42 Identities=36% Similarity=0.568 Sum_probs=38.4
Q ss_pred CCCCceeEEeCCCCCCCHHHHHHHHhcCcceeEEEEeccCCC
Q 032483 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKVRQH 139 (139)
Q Consensus 98 ~~~~~~lfV~nL~~~~t~~~L~~~F~~fG~v~~~~i~~d~~~ 139 (139)
....++|||+|||+.+++++|+++|++||.|..|.|++|+.+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~ 54 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTT 54 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCC
Confidence 455789999999999999999999999999999999998653
No 77
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.25 E-value=7.1e-12 Score=80.16 Aligned_cols=48 Identities=23% Similarity=0.396 Sum_probs=43.0
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHHc--Cc----ccCCcEEEEeecCCCCC
Q 032483 1 MPKDQGSKAHRGIGFITFASADSVENLMVD--TH----ELGGSTVVVDRATPKED 49 (139)
Q Consensus 1 i~~d~~tg~srG~gFV~F~~~~~a~~Ai~~--~~----~i~gr~i~v~~~~~~~~ 49 (139)
|++|+.||++||||||+|.+. +|.+||.. +. .|+||.|.|+++.++..
T Consensus 57 i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~l~V~~a~~~~~ 110 (131)
T 2m2b_A 57 VIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKTINVEFAKGSKR 110 (131)
T ss_dssp CCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCCCCCEECCCSCC
T ss_pred EEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEEEEEEECCCCCC
Confidence 688999999999999999999 99999994 56 89999999999987543
No 78
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.25 E-value=7.4e-12 Score=74.99 Aligned_cols=39 Identities=41% Similarity=0.946 Sum_probs=34.8
Q ss_pred CCCCceeEEeCCCCCCCHHHHHHHHhcCcceeEEEEecc
Q 032483 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKV 136 (139)
Q Consensus 98 ~~~~~~lfV~nL~~~~t~~~L~~~F~~fG~v~~~~i~~d 136 (139)
..+.++|||+|||+++|+++|+++|++||.|.+|.|++|
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~ 46 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP 46 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC
Confidence 455789999999999999999999999999999999976
No 79
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.25 E-value=5e-12 Score=75.11 Aligned_cols=44 Identities=34% Similarity=0.578 Sum_probs=39.8
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHHc-CcccCCcEEEEeec
Q 032483 1 MPKDQGSKAHRGIGFITFASADSVENLMVD-THELGGSTVVVDRA 44 (139)
Q Consensus 1 i~~d~~tg~srG~gFV~F~~~~~a~~Ai~~-~~~i~gr~i~v~~~ 44 (139)
|++|+.||+++|||||+|.+.++|++||+. .+.|+|+.|.|++|
T Consensus 43 i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 43 IKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKA 87 (87)
T ss_dssp EEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEEEEEEEC
T ss_pred EeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 457889999999999999999999999985 57899999999875
No 80
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.25 E-value=2.3e-11 Score=74.65 Aligned_cols=41 Identities=22% Similarity=0.411 Sum_probs=37.9
Q ss_pred CCCCceeEEeCCCCCCCHHHHHHHHhcCcceeEEEEeccCC
Q 032483 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKVRQ 138 (139)
Q Consensus 98 ~~~~~~lfV~nL~~~~t~~~L~~~F~~fG~v~~~~i~~d~~ 138 (139)
....++|||+|||+.+++++|+++|++||.|..|.|++|+.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~ 52 (105)
T 1x5u_A 12 RNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRV 52 (105)
T ss_dssp CCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC
Confidence 45578999999999999999999999999999999999874
No 81
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.25 E-value=9.1e-12 Score=76.27 Aligned_cols=49 Identities=18% Similarity=0.380 Sum_probs=43.6
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHHc--CcccCCcEEEEeecCCCCC
Q 032483 1 MPKDQGSKAHRGIGFITFASADSVENLMVD--THELGGSTVVVDRATPKED 49 (139)
Q Consensus 1 i~~d~~tg~srG~gFV~F~~~~~a~~Ai~~--~~~i~gr~i~v~~~~~~~~ 49 (139)
|++|+.+|+++|||||+|.+.++|++||.. +..|+|+.|.|.++.++..
T Consensus 47 i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 97 (103)
T 2cq0_A 47 LAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWAKPSTN 97 (103)
T ss_dssp EEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESSCCCC
T ss_pred EeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEECCCCCC
Confidence 457888999999999999999999999994 6889999999999987643
No 82
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.25 E-value=8.3e-12 Score=76.22 Aligned_cols=48 Identities=23% Similarity=0.514 Sum_probs=42.3
Q ss_pred CCCCC-CCCCccceEEEEECCHHHHHHHHH-cCcccCCcEEEEeecCCCC
Q 032483 1 MPKDQ-GSKAHRGIGFITFASADSVENLMV-DTHELGGSTVVVDRATPKE 48 (139)
Q Consensus 1 i~~d~-~tg~srG~gFV~F~~~~~a~~Ai~-~~~~i~gr~i~v~~~~~~~ 48 (139)
|++|+ .+|++||||||+|.+.++|++||. ++..|+|+.|.|+++.++.
T Consensus 50 i~~~~~~~g~~~g~afV~f~~~~~a~~Ai~l~g~~~~g~~l~V~~a~~~~ 99 (100)
T 2j76_E 50 LPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNRRIRVDVADQAQ 99 (100)
T ss_dssp CSCCTTTTCCCCSCEEEEECCHHHHHHHHHTTTCCBTTBCCCCEECCCSC
T ss_pred EEecCCcCCccCeEEEEEECCHHHHHHHHhcCCCEECCeEEEEEeccCCC
Confidence 56787 699999999999999999999995 3688999999999987653
No 83
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.25 E-value=4.5e-12 Score=77.41 Aligned_cols=48 Identities=17% Similarity=0.385 Sum_probs=43.0
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHH-cCcccCCcEEEEeecCCCC
Q 032483 1 MPKDQGSKAHRGIGFITFASADSVENLMV-DTHELGGSTVVVDRATPKE 48 (139)
Q Consensus 1 i~~d~~tg~srG~gFV~F~~~~~a~~Ai~-~~~~i~gr~i~v~~~~~~~ 48 (139)
+++|+.+|++||||||+|.+.++|++||+ +++.|+|+.|.|.++.++.
T Consensus 48 ~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~~~ 96 (101)
T 1fj7_A 48 AVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPKGRD 96 (101)
T ss_dssp CCCEEEEETTTTEEEEEESSHHHHHHHHHGGGCCBTTBCCEEECCSCCC
T ss_pred EEecCCCCCcCcEEEEEECCHHHHHHHHhcCCcEECCcEEEEEEcCCCC
Confidence 46788899999999999999999999998 4578999999999988764
No 84
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.24 E-value=3.1e-11 Score=73.87 Aligned_cols=41 Identities=32% Similarity=0.545 Sum_probs=37.7
Q ss_pred CCCCceeEEeCCCCCCCHHHHHHHHhcCcceeEEEEeccCC
Q 032483 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKVRQ 138 (139)
Q Consensus 98 ~~~~~~lfV~nL~~~~t~~~L~~~F~~fG~v~~~~i~~d~~ 138 (139)
....++|||+|||+++++++|+++|++||.|..|+|++|+.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~ 52 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER 52 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC
Confidence 45578999999999999999999999999999999998864
No 85
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.24 E-value=2.3e-11 Score=75.33 Aligned_cols=42 Identities=24% Similarity=0.341 Sum_probs=38.3
Q ss_pred CCCCceeEEeCCCCCCCHHHHHHHHhcCcceeEEEEeccCCC
Q 032483 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKVRQH 139 (139)
Q Consensus 98 ~~~~~~lfV~nL~~~~t~~~L~~~F~~fG~v~~~~i~~d~~~ 139 (139)
....++|||+|||+.+++++|+++|++||.|.+|.|++|+.|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~ 53 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDT 53 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSS
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC
Confidence 455789999999999999999999999999999999998653
No 86
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.24 E-value=1.2e-11 Score=76.14 Aligned_cols=40 Identities=15% Similarity=0.513 Sum_probs=37.0
Q ss_pred CCCceeEEeCCCCCCCHHHHHHHHhcCcceeEEEEeccCC
Q 032483 99 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKVRQ 138 (139)
Q Consensus 99 ~~~~~lfV~nL~~~~t~~~L~~~F~~fG~v~~~~i~~d~~ 138 (139)
...++|||+|||+++|+++|+++|++||+|.+|.|++|+.
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~ 48 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH 48 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC
Confidence 4468999999999999999999999999999999999863
No 87
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.24 E-value=3.3e-12 Score=84.24 Aligned_cols=47 Identities=26% Similarity=0.333 Sum_probs=42.8
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHHc--CcccCCcEEEEeecCCC
Q 032483 1 MPKDQGSKAHRGIGFITFASADSVENLMVD--THELGGSTVVVDRATPK 47 (139)
Q Consensus 1 i~~d~~tg~srG~gFV~F~~~~~a~~Ai~~--~~~i~gr~i~v~~~~~~ 47 (139)
|++|+.||++||||||+|.+.++|++||+. +..|+|+.|.|+++.++
T Consensus 89 i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~a~~~ 137 (156)
T 3n9u_C 89 FAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRPATRQ 137 (156)
T ss_dssp EEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEECCHH
T ss_pred EEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEEcCCC
Confidence 467899999999999999999999999995 68999999999998754
No 88
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.23 E-value=1.3e-11 Score=75.33 Aligned_cols=49 Identities=31% Similarity=0.607 Sum_probs=43.8
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHH--cCcccCCcEEEEeecCCCCC
Q 032483 1 MPKDQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKED 49 (139)
Q Consensus 1 i~~d~~tg~srG~gFV~F~~~~~a~~Ai~--~~~~i~gr~i~v~~~~~~~~ 49 (139)
|++|+.+++++|||||+|.+.++|++||+ ++..|+|++|.|.++.++..
T Consensus 44 i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 94 (102)
T 1x5s_A 44 VVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGKSSD 94 (102)
T ss_dssp ECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEEECCCC
T ss_pred EEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCC
Confidence 46788999999999999999999999997 46889999999999987644
No 89
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.23 E-value=6.7e-12 Score=76.14 Aligned_cols=42 Identities=10% Similarity=0.205 Sum_probs=37.2
Q ss_pred CCCCceeEEeCCCCCCCHHHHHHHHhcCcc--eeEEEEeccCCC
Q 032483 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGR--ILDVYVPKVRQH 139 (139)
Q Consensus 98 ~~~~~~lfV~nL~~~~t~~~L~~~F~~fG~--v~~~~i~~d~~~ 139 (139)
.....+|||+|||+++|+++|+++|++||. |.+|+|++|+.|
T Consensus 6 ~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~t 49 (95)
T 2lkz_A 6 HHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQT 49 (95)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSS
T ss_pred CCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCC
Confidence 345679999999999999999999999995 679999999864
No 90
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.23 E-value=1.4e-11 Score=75.80 Aligned_cols=41 Identities=32% Similarity=0.631 Sum_probs=38.0
Q ss_pred CCCCceeEEeCCCCCCCHHHHHHHHhcCcceeEEEEeccCC
Q 032483 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKVRQ 138 (139)
Q Consensus 98 ~~~~~~lfV~nL~~~~t~~~L~~~F~~fG~v~~~~i~~d~~ 138 (139)
....++|||+|||+++++++|+++|++||.|.+|.|++|+.
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~ 50 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRF 50 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC
Confidence 45578999999999999999999999999999999999875
No 91
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.23 E-value=8.1e-11 Score=73.70 Aligned_cols=41 Identities=34% Similarity=0.452 Sum_probs=37.9
Q ss_pred CCCCceeEEeCCCCCCCHHHHHHHHhcCcceeEEEEeccCC
Q 032483 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKVRQ 138 (139)
Q Consensus 98 ~~~~~~lfV~nL~~~~t~~~L~~~F~~fG~v~~~~i~~d~~ 138 (139)
....++|||+|||+++++++|+++|++||.|.+|+|++|+.
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~ 77 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQ 77 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCC
Confidence 45578999999999999999999999999999999999864
No 92
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.23 E-value=3.5e-11 Score=75.07 Aligned_cols=41 Identities=39% Similarity=0.523 Sum_probs=38.0
Q ss_pred CCCCceeEEeCCCCCCCHHHHHHHHhcCcceeEEEEeccCC
Q 032483 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKVRQ 138 (139)
Q Consensus 98 ~~~~~~lfV~nL~~~~t~~~L~~~F~~fG~v~~~~i~~d~~ 138 (139)
....++|||+|||+.+++++|+++|++||.|..|.|++|+.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~ 52 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMA 52 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCC
Confidence 45678999999999999999999999999999999999864
No 93
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.23 E-value=6.5e-12 Score=77.12 Aligned_cols=47 Identities=13% Similarity=0.099 Sum_probs=41.3
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHH-cCcccCCcEEEEeecCCCC
Q 032483 1 MPKDQGSKAHRGIGFITFASADSVENLMV-DTHELGGSTVVVDRATPKE 48 (139)
Q Consensus 1 i~~d~~tg~srG~gFV~F~~~~~a~~Ai~-~~~~i~gr~i~v~~~~~~~ 48 (139)
|++|+ +|++||||||+|.+.++|++||+ +.+.|+||.|.|..+.+.+
T Consensus 46 i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~~~~~~ 93 (102)
T 1wez_A 46 IEIGP-DGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELFLNSTAG 93 (102)
T ss_dssp EEESS-SSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCCEEEEECCCC
T ss_pred EEECC-CCCEeeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEECCCCC
Confidence 46787 99999999999999999999997 3688999999999887653
No 94
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.22 E-value=1.1e-11 Score=77.46 Aligned_cols=49 Identities=16% Similarity=0.314 Sum_probs=43.7
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHHc--CcccCCcEEEEeecCCCCC
Q 032483 1 MPKDQGSKAHRGIGFITFASADSVENLMVD--THELGGSTVVVDRATPKED 49 (139)
Q Consensus 1 i~~d~~tg~srG~gFV~F~~~~~a~~Ai~~--~~~i~gr~i~v~~~~~~~~ 49 (139)
|++|+.+|++||||||+|.+.++|++||+. +..|+|+.|.|.++.++..
T Consensus 57 i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 107 (115)
T 2cpz_A 57 VFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKND 107 (115)
T ss_dssp EEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECCCCSCC
T ss_pred EEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcCCCCc
Confidence 457888999999999999999999999984 6889999999999987654
No 95
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.22 E-value=5.5e-12 Score=78.84 Aligned_cols=46 Identities=17% Similarity=0.212 Sum_probs=41.7
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHHc-CcccCCcEEEEeecCCC
Q 032483 1 MPKDQGSKAHRGIGFITFASADSVENLMVD-THELGGSTVVVDRATPK 47 (139)
Q Consensus 1 i~~d~~tg~srG~gFV~F~~~~~a~~Ai~~-~~~i~gr~i~v~~~~~~ 47 (139)
|++|+ +|++||||||+|.+.++|++||+. ++.|+||.|.|.++.++
T Consensus 48 i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~v~~a~~~ 94 (114)
T 2cpy_A 48 VLVDN-NGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVHVVTLE 94 (114)
T ss_dssp ECCCT-TSSCSSCEEEECSSHHHHHHHGGGCSEEETTEEEEEEEECHH
T ss_pred EEECC-CCCcceEEEEEECCHHHHHHHHHhCCCccCCeEEEEEECCHH
Confidence 46787 999999999999999999999994 78899999999998765
No 96
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.22 E-value=3.4e-11 Score=73.69 Aligned_cols=41 Identities=17% Similarity=0.288 Sum_probs=37.8
Q ss_pred CCCCceeEEeCCCCCCCHHHHHHHHhcCcceeEEEEeccCC
Q 032483 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKVRQ 138 (139)
Q Consensus 98 ~~~~~~lfV~nL~~~~t~~~L~~~F~~fG~v~~~~i~~d~~ 138 (139)
....++|||+|||+.+++++|+++|++||.|..|.|++|+.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~ 52 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHT 52 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCC
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCC
Confidence 45578999999999999999999999999999999999864
No 97
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.22 E-value=1.9e-11 Score=75.72 Aligned_cols=48 Identities=17% Similarity=0.248 Sum_probs=43.4
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHH--cCcccCCcEEEEeecCCCC
Q 032483 1 MPKDQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKE 48 (139)
Q Consensus 1 i~~d~~tg~srG~gFV~F~~~~~a~~Ai~--~~~~i~gr~i~v~~~~~~~ 48 (139)
|++|+.+|+++|||||+|.+.++|++||. ++..|+|+.|.|.++.++.
T Consensus 58 i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 107 (110)
T 1oo0_B 58 LNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKG 107 (110)
T ss_dssp CCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEESS
T ss_pred EEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEcccCC
Confidence 56888999999999999999999999999 4788999999999987653
No 98
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.22 E-value=1.5e-11 Score=84.57 Aligned_cols=41 Identities=27% Similarity=0.267 Sum_probs=36.9
Q ss_pred CCCceeEEeCCCCCCCHHHHHHHHhcCcceeEEEEeccCCC
Q 032483 99 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKVRQH 139 (139)
Q Consensus 99 ~~~~~lfV~nL~~~~t~~~L~~~F~~fG~v~~~~i~~d~~~ 139 (139)
.+.++|||+|||+++|+++|+++|++||+|++|+|++|+.|
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~t 53 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMIT 53 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTT
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCC
Confidence 44689999999999999999999999999999999998754
No 99
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.21 E-value=1.7e-11 Score=75.38 Aligned_cols=47 Identities=21% Similarity=0.371 Sum_probs=41.7
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHHc-CcccCCcEEEEeecCCCC
Q 032483 1 MPKDQGSKAHRGIGFITFASADSVENLMVD-THELGGSTVVVDRATPKE 48 (139)
Q Consensus 1 i~~d~~tg~srG~gFV~F~~~~~a~~Ai~~-~~~i~gr~i~v~~~~~~~ 48 (139)
|++| .+|++||||||+|.+.++|++||.. +..|+||.|.|..+.+++
T Consensus 48 i~~~-~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~i~v~~~~~~~ 95 (104)
T 1wg5_A 48 LPVD-FQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAE 95 (104)
T ss_dssp CCBC-SSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCCEEEEECTTT
T ss_pred EEEC-CCCCcceEEEEEECCHHHHHHHHHhCcchhCCcEEEEEECCHHH
Confidence 4677 8999999999999999999999995 688999999999887653
No 100
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.21 E-value=2.4e-11 Score=74.36 Aligned_cols=41 Identities=27% Similarity=0.455 Sum_probs=38.0
Q ss_pred CCCCceeEEeCCCCCCCHHHHHHHHhcCcceeEEEEeccCC
Q 032483 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKVRQ 138 (139)
Q Consensus 98 ~~~~~~lfV~nL~~~~t~~~L~~~F~~fG~v~~~~i~~d~~ 138 (139)
....++|||+|||+.+++++|+++|++||.|..|.|++|+.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~ 52 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKT 52 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCC
Confidence 45579999999999999999999999999999999999864
No 101
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.21 E-value=7.9e-12 Score=76.89 Aligned_cols=48 Identities=15% Similarity=0.272 Sum_probs=43.0
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHHc--CcccCCcEEEEeecCCCC
Q 032483 1 MPKDQGSKAHRGIGFITFASADSVENLMVD--THELGGSTVVVDRATPKE 48 (139)
Q Consensus 1 i~~d~~tg~srG~gFV~F~~~~~a~~Ai~~--~~~i~gr~i~v~~~~~~~ 48 (139)
|++|+.||+++|||||+|.+.++|++||+. ++.++|+.|.|+++.++.
T Consensus 55 i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 104 (106)
T 1p27_B 55 LNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFVRG 104 (106)
T ss_dssp EEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEESEESS
T ss_pred EEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEeecCCC
Confidence 457889999999999999999999999994 789999999999987653
No 102
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.21 E-value=4e-11 Score=73.77 Aligned_cols=39 Identities=33% Similarity=0.622 Sum_probs=36.8
Q ss_pred CCCCceeEEeCCCCCCCHHHHHHHHhcCcceeEEEEecc
Q 032483 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKV 136 (139)
Q Consensus 98 ~~~~~~lfV~nL~~~~t~~~L~~~F~~fG~v~~~~i~~d 136 (139)
....++|||+|||+.+++++|+++|++||.|..|.|++|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~ 50 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKK 50 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCC
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecC
Confidence 455789999999999999999999999999999999988
No 103
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.21 E-value=3.1e-11 Score=75.66 Aligned_cols=47 Identities=30% Similarity=0.509 Sum_probs=41.6
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHHc--CcccCCcEEEEeecCCCC
Q 032483 1 MPKDQGSKAHRGIGFITFASADSVENLMVD--THELGGSTVVVDRATPKE 48 (139)
Q Consensus 1 i~~d~~tg~srG~gFV~F~~~~~a~~Ai~~--~~~i~gr~i~v~~~~~~~ 48 (139)
|++|+ +|+++|||||+|.+.++|++||+. +..|+|+.|.|.++.++.
T Consensus 39 i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 87 (116)
T 2fy1_A 39 LIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAKKPS 87 (116)
T ss_dssp EECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECCCSS
T ss_pred EEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCCCC
Confidence 35676 999999999999999999999984 688999999999987654
No 104
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.21 E-value=2e-11 Score=78.00 Aligned_cols=42 Identities=17% Similarity=0.239 Sum_probs=37.9
Q ss_pred CCCCceeEEeCCCCCCCHHHHHHHHhcCcceeE--EEEeccCCC
Q 032483 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILD--VYVPKVRQH 139 (139)
Q Consensus 98 ~~~~~~lfV~nL~~~~t~~~L~~~F~~fG~v~~--~~i~~d~~~ 139 (139)
....++|||+|||+++|+++|+++|++||.|.. |+|++|+.|
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~t 63 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQT 63 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCC
Confidence 345689999999999999999999999999977 999999854
No 105
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.21 E-value=1.3e-11 Score=76.64 Aligned_cols=46 Identities=22% Similarity=0.241 Sum_probs=40.2
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHH-cCcccCCcEEEEeecCCC
Q 032483 1 MPKDQGSKAHRGIGFITFASADSVENLMV-DTHELGGSTVVVDRATPK 47 (139)
Q Consensus 1 i~~d~~tg~srG~gFV~F~~~~~a~~Ai~-~~~~i~gr~i~v~~~~~~ 47 (139)
|++|+. |++||||||+|.+.++|++||. +++.|+||.|.|..+.++
T Consensus 47 i~~d~~-g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~a~~~ 93 (109)
T 2dnn_A 47 LLKDHV-GRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPATER 93 (109)
T ss_dssp ECCCTT-CCCCSEEEEECSSHHHHHHHHHTTTEEETTEEEEEEECCHH
T ss_pred EEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECCcc
Confidence 467865 9999999999999999999997 468899999999887643
No 106
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.21 E-value=1.5e-11 Score=72.69 Aligned_cols=40 Identities=15% Similarity=0.274 Sum_probs=37.1
Q ss_pred CCCceeEEeCCCCCCCHHHHHHHHhcCcceeEEEEeccCC
Q 032483 99 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKVRQ 138 (139)
Q Consensus 99 ~~~~~lfV~nL~~~~t~~~L~~~F~~fG~v~~~~i~~d~~ 138 (139)
...++|||+|||+++++++|+++|++||.|.+|.|++|+.
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~ 42 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKT 42 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC
Confidence 3468999999999999999999999999999999999865
No 107
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.21 E-value=2e-11 Score=78.63 Aligned_cols=49 Identities=20% Similarity=0.367 Sum_probs=43.5
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHHc--CcccCCcEEEEeecCCCCC
Q 032483 1 MPKDQGSKAHRGIGFITFASADSVENLMVD--THELGGSTVVVDRATPKED 49 (139)
Q Consensus 1 i~~d~~tg~srG~gFV~F~~~~~a~~Ai~~--~~~i~gr~i~v~~~~~~~~ 49 (139)
|++|+.||++||||||+|.+.++|++||+. +..|+|+.|.|+++.++..
T Consensus 74 i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 124 (139)
T 1u6f_A 74 IVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALAASGHQ 124 (139)
T ss_dssp EEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEESSCCCC
T ss_pred EEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCC
Confidence 457888999999999999999999999994 6889999999999987643
No 108
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.21 E-value=4.3e-11 Score=73.40 Aligned_cols=41 Identities=24% Similarity=0.508 Sum_probs=37.3
Q ss_pred CCCCceeEEeCCCCCCCHHHHHHHHhcCcceeEEEEeccCCC
Q 032483 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKVRQH 139 (139)
Q Consensus 98 ~~~~~~lfV~nL~~~~t~~~L~~~F~~fG~v~~~~i~~d~~~ 139 (139)
....++|||+|||+++++++|+++|++|| |..|.|++|+.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~ 52 (104)
T 1wi8_A 12 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSN 52 (104)
T ss_dssp SSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSC
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCC
Confidence 34568999999999999999999999999 999999998753
No 109
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.21 E-value=1.4e-11 Score=73.78 Aligned_cols=47 Identities=17% Similarity=0.362 Sum_probs=41.5
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHH-cCcccCCcEEEEeecCCCC
Q 032483 1 MPKDQGSKAHRGIGFITFASADSVENLMV-DTHELGGSTVVVDRATPKE 48 (139)
Q Consensus 1 i~~d~~tg~srG~gFV~F~~~~~a~~Ai~-~~~~i~gr~i~v~~~~~~~ 48 (139)
|++| .+|+++|||||+|.+.++|++||. ++..|+||.|.|.++.++.
T Consensus 41 i~~~-~~g~~~g~afV~f~~~~~a~~A~~~~g~~~~gr~i~v~~a~~~~ 88 (91)
T 2dgw_A 41 IVRN-AHGNKTGYIFVDFSNEEEVKQALKCNREYMGGRYIEVFREKSGP 88 (91)
T ss_dssp EEEC-TTSCEEEEEEEECSSHHHHHHHHHSCSEEETTEEEEEEEESSCC
T ss_pred EEEC-CCCCCceEEEEEECCHHHHHHHHHhCCceeCCcEEEEEECCcCC
Confidence 3567 789999999999999999999999 3578999999999988763
No 110
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.20 E-value=4.8e-11 Score=73.32 Aligned_cols=49 Identities=18% Similarity=0.282 Sum_probs=42.8
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHHc--Cccc---CCcEEEEeecCCCCC
Q 032483 1 MPKDQGSKAHRGIGFITFASADSVENLMVD--THEL---GGSTVVVDRATPKED 49 (139)
Q Consensus 1 i~~d~~tg~srG~gFV~F~~~~~a~~Ai~~--~~~i---~gr~i~v~~~~~~~~ 49 (139)
|++|+.||++||||||+|.+.++|++||+. +..+ .|++|.|+++.++..
T Consensus 45 i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~~~~ 98 (106)
T 2dgp_A 45 VLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSESR 98 (106)
T ss_dssp CCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEECCCCSC
T ss_pred EEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEEEECCcccc
Confidence 578899999999999999999999999984 4555 889999999987643
No 111
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.20 E-value=4.3e-11 Score=78.57 Aligned_cols=48 Identities=27% Similarity=0.431 Sum_probs=43.6
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHHc--CcccCCcEEEEeecCCCC
Q 032483 1 MPKDQGSKAHRGIGFITFASADSVENLMVD--THELGGSTVVVDRATPKE 48 (139)
Q Consensus 1 i~~d~~tg~srG~gFV~F~~~~~a~~Ai~~--~~~i~gr~i~v~~~~~~~ 48 (139)
|++|+.||++||||||+|.+.++|++||.. ++.|+|++|.|.++.++.
T Consensus 102 i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 151 (158)
T 2kn4_A 102 IPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGR 151 (158)
T ss_dssp CCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSS
T ss_pred EeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCC
Confidence 578899999999999999999999999984 688999999999997653
No 112
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.20 E-value=7e-11 Score=71.87 Aligned_cols=40 Identities=25% Similarity=0.383 Sum_probs=37.1
Q ss_pred CCCCceeEEeCCCCCCCHHHHHHHHhcCcceeEEEEeccC
Q 032483 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKVR 137 (139)
Q Consensus 98 ~~~~~~lfV~nL~~~~t~~~L~~~F~~fG~v~~~~i~~d~ 137 (139)
....++|||+|||+.+++++|+++|++||.|.+|.|+.|+
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~ 53 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR 53 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC
Confidence 3457899999999999999999999999999999999886
No 113
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.20 E-value=2.7e-11 Score=72.99 Aligned_cols=41 Identities=27% Similarity=0.412 Sum_probs=37.6
Q ss_pred CCCCceeEEeCCCCCCCHHHHHHHHhcCcceeEEEEeccCC
Q 032483 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKVRQ 138 (139)
Q Consensus 98 ~~~~~~lfV~nL~~~~t~~~L~~~F~~fG~v~~~~i~~d~~ 138 (139)
....++|||+|||+.+++++|+++|++||+|.+|.|++|++
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~ 53 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE 53 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC
Confidence 45578999999999999999999999999999999998863
No 114
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.20 E-value=2.1e-11 Score=74.23 Aligned_cols=47 Identities=4% Similarity=0.253 Sum_probs=41.6
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHHc--CcccCCcEEEEeecCCCC
Q 032483 1 MPKDQGSKAHRGIGFITFASADSVENLMVD--THELGGSTVVVDRATPKE 48 (139)
Q Consensus 1 i~~d~~tg~srG~gFV~F~~~~~a~~Ai~~--~~~i~gr~i~v~~~~~~~ 48 (139)
|++|+ +|++||||||+|.+.++|++||+. +..++|++|.|.++.++.
T Consensus 49 i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 97 (100)
T 2do4_A 49 LVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISNSGP 97 (100)
T ss_dssp EEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEECCCCS
T ss_pred EEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCCCC
Confidence 35676 899999999999999999999984 688999999999998764
No 115
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.20 E-value=7.7e-12 Score=77.50 Aligned_cols=48 Identities=25% Similarity=0.487 Sum_probs=43.0
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHH--cCcccCCcEEEEeecCCCC
Q 032483 1 MPKDQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKE 48 (139)
Q Consensus 1 i~~d~~tg~srG~gFV~F~~~~~a~~Ai~--~~~~i~gr~i~v~~~~~~~ 48 (139)
|++|+.+|+++|||||+|.+.++|++||+ ++..++|++|.|.++.++.
T Consensus 58 i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~k~ 107 (108)
T 2jrs_A 58 LMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTERT 107 (108)
T ss_dssp EEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEECSCSSC
T ss_pred EEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcccCC
Confidence 35678899999999999999999999998 4788999999999987763
No 116
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.20 E-value=5.5e-11 Score=73.14 Aligned_cols=49 Identities=29% Similarity=0.580 Sum_probs=43.6
Q ss_pred CCCC-CCCCCccceEEEEECCHHHHHHHHHc---CcccCCcEEEEeecCCCCC
Q 032483 1 MPKD-QGSKAHRGIGFITFASADSVENLMVD---THELGGSTVVVDRATPKED 49 (139)
Q Consensus 1 i~~d-~~tg~srG~gFV~F~~~~~a~~Ai~~---~~~i~gr~i~v~~~~~~~~ 49 (139)
|++| +.+|+++|||||+|.+.++|++||.. +..|+|+.|.|+++.++..
T Consensus 47 i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v~~a~~~~~ 99 (107)
T 2cph_A 47 LPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLEWADSEVT 99 (107)
T ss_dssp CCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEEEECCCCCC
T ss_pred EecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEEEeCCCCCC
Confidence 4677 78999999999999999999999983 6889999999999987654
No 117
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.20 E-value=3.7e-11 Score=72.38 Aligned_cols=40 Identities=28% Similarity=0.411 Sum_probs=37.1
Q ss_pred CCCceeEEeCCCCCCCHHHHHHHHhcCcceeEEEEeccCC
Q 032483 99 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKVRQ 138 (139)
Q Consensus 99 ~~~~~lfV~nL~~~~t~~~L~~~F~~fG~v~~~~i~~d~~ 138 (139)
...++|||+|||+.+++++|+++|++||.|..|.|++|+.
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~ 42 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSD 42 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCC
Confidence 3468999999999999999999999999999999999875
No 118
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.20 E-value=2.8e-11 Score=71.40 Aligned_cols=40 Identities=28% Similarity=0.480 Sum_probs=37.0
Q ss_pred CCCceeEEeCCCCCCCHHHHHHHHhcCcceeEEEEeccCC
Q 032483 99 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKVRQ 138 (139)
Q Consensus 99 ~~~~~lfV~nL~~~~t~~~L~~~F~~fG~v~~~~i~~d~~ 138 (139)
...++|||+|||+++++++|+++|++||.|.+|.|++|+.
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~ 44 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYE 44 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETT
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCC
Confidence 4478999999999999999999999999999999998854
No 119
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.20 E-value=1e-10 Score=72.28 Aligned_cols=40 Identities=28% Similarity=0.565 Sum_probs=36.6
Q ss_pred CCCCceeEEeCCCCCCCHHHHHHHHhcCcceeEEEEeccC
Q 032483 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKVR 137 (139)
Q Consensus 98 ~~~~~~lfV~nL~~~~t~~~L~~~F~~fG~v~~~~i~~d~ 137 (139)
....++|||+|||+++++++|+++|++||.|..|.|+.+.
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~ 58 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRR 58 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC
Confidence 4457899999999999999999999999999999998764
No 120
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.19 E-value=1e-11 Score=75.57 Aligned_cols=44 Identities=20% Similarity=0.331 Sum_probs=40.0
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHH--cCcccCCcEEEEeec
Q 032483 1 MPKDQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRA 44 (139)
Q Consensus 1 i~~d~~tg~srG~gFV~F~~~~~a~~Ai~--~~~~i~gr~i~v~~~ 44 (139)
|++|+.||++||||||+|.+.++|++||+ ++..++|+.|.|+++
T Consensus 53 i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~A 98 (99)
T 2la6_A 53 LYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFA 98 (99)
T ss_dssp EEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred EEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEec
Confidence 35788999999999999999999999998 478899999999986
No 121
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.19 E-value=3.4e-11 Score=72.93 Aligned_cols=41 Identities=17% Similarity=0.310 Sum_probs=37.7
Q ss_pred CCCceeEEeCCCCCCCHHHHH----HHHhcCcceeEEEEeccCCC
Q 032483 99 RIGKKIFVGRLPQEATAEDLR----RYFSRFGRILDVYVPKVRQH 139 (139)
Q Consensus 99 ~~~~~lfV~nL~~~~t~~~L~----~~F~~fG~v~~~~i~~d~~~ 139 (139)
...++|||+|||+.+++++|+ ++|++||.|.+|.|++|+.+
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~ 51 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY 51 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC
Confidence 446899999999999999999 99999999999999998764
No 122
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.19 E-value=3e-11 Score=70.96 Aligned_cols=37 Identities=32% Similarity=0.322 Sum_probs=35.2
Q ss_pred ceeEEeCCCCCCCHHHHHHHHhcCcceeEEEEeccCC
Q 032483 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKVRQ 138 (139)
Q Consensus 102 ~~lfV~nL~~~~t~~~L~~~F~~fG~v~~~~i~~d~~ 138 (139)
++|||+|||+++++++|+++|++||+|.++.|++|+.
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~ 38 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQ 38 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTT
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCC
Confidence 6899999999999999999999999999999998864
No 123
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.19 E-value=2.8e-11 Score=72.79 Aligned_cols=44 Identities=27% Similarity=0.454 Sum_probs=40.2
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHHc--CcccCCcEEEEeec
Q 032483 1 MPKDQGSKAHRGIGFITFASADSVENLMVD--THELGGSTVVVDRA 44 (139)
Q Consensus 1 i~~d~~tg~srG~gFV~F~~~~~a~~Ai~~--~~~i~gr~i~v~~~ 44 (139)
|++|+.+|+++|||||+|.+.++|++||+. +..|+|++|.|.++
T Consensus 48 i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 93 (94)
T 2e5h_A 48 IMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIA 93 (94)
T ss_dssp ECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred EEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEec
Confidence 467889999999999999999999999984 68899999999986
No 124
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.19 E-value=3.7e-11 Score=72.98 Aligned_cols=40 Identities=25% Similarity=0.438 Sum_probs=37.2
Q ss_pred CCCceeEEeCCCCCCCHHHHHHHHhcCcceeEEEEeccCC
Q 032483 99 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKVRQ 138 (139)
Q Consensus 99 ~~~~~lfV~nL~~~~t~~~L~~~F~~fG~v~~~~i~~d~~ 138 (139)
...++|||+|||+++++++|+++|++||.|.+|.|++|+.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~ 45 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSL 45 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCC
Confidence 4468999999999999999999999999999999999874
No 125
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.19 E-value=3.2e-11 Score=71.48 Aligned_cols=40 Identities=35% Similarity=0.439 Sum_probs=36.1
Q ss_pred CCCceeEEeCCCCCCCHHHHHHHHhcCcceeEEEEeccCC
Q 032483 99 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKVRQ 138 (139)
Q Consensus 99 ~~~~~lfV~nL~~~~t~~~L~~~F~~fG~v~~~~i~~d~~ 138 (139)
...++|||+|||+++++++|+++|++||.|.+|.|++|+.
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~ 43 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMA 43 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCC
Confidence 3468999999999999999999999999999999999864
No 126
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.19 E-value=8.1e-11 Score=72.18 Aligned_cols=39 Identities=33% Similarity=0.507 Sum_probs=36.7
Q ss_pred CCCceeEEeCCCCCCCHHHHHHHHhcCcceeEEEEeccC
Q 032483 99 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKVR 137 (139)
Q Consensus 99 ~~~~~lfV~nL~~~~t~~~L~~~F~~fG~v~~~~i~~d~ 137 (139)
...++|||+|||+.+++++|+++|++||.|..|.|++|+
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~ 51 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP 51 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC
Confidence 447899999999999999999999999999999999886
No 127
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.19 E-value=1.8e-11 Score=72.20 Aligned_cols=44 Identities=32% Similarity=0.532 Sum_probs=40.2
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHH--cCcccCCcEEEEeec
Q 032483 1 MPKDQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRA 44 (139)
Q Consensus 1 i~~d~~tg~srG~gFV~F~~~~~a~~Ai~--~~~~i~gr~i~v~~~ 44 (139)
|++|+.+|+++|||||+|.+.++|++|++ ++..++|++|.|+++
T Consensus 39 i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 39 IPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred EEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 46788999999999999999999999997 478899999999886
No 128
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.19 E-value=2.8e-11 Score=73.49 Aligned_cols=41 Identities=17% Similarity=0.332 Sum_probs=37.7
Q ss_pred CCCceeEEeCCCCCCCHHHHHHHHhcCccee-EEEEeccCCC
Q 032483 99 RIGKKIFVGRLPQEATAEDLRRYFSRFGRIL-DVYVPKVRQH 139 (139)
Q Consensus 99 ~~~~~lfV~nL~~~~t~~~L~~~F~~fG~v~-~~~i~~d~~~ 139 (139)
...++|||+|||+++++++|+++|++||.|. +|+|++|+.|
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~ 48 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLT 48 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSS
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCC
Confidence 4478999999999999999999999999999 9999998753
No 129
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.19 E-value=6.3e-11 Score=72.76 Aligned_cols=40 Identities=15% Similarity=0.225 Sum_probs=36.1
Q ss_pred CCCCceeEEeCCCCCCCHHHHHHHHhcCcceeE-EEEeccC
Q 032483 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILD-VYVPKVR 137 (139)
Q Consensus 98 ~~~~~~lfV~nL~~~~t~~~L~~~F~~fG~v~~-~~i~~d~ 137 (139)
....++|||+|||+++|+++|+++|++||.|.. |.|++|.
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~ 52 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDF 52 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECC
Confidence 455789999999999999999999999999998 8888873
No 130
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.19 E-value=3.7e-11 Score=73.36 Aligned_cols=41 Identities=34% Similarity=0.560 Sum_probs=37.6
Q ss_pred CCCCceeEEeCCCCCCCHHHHHHHHhcCcceeEEEEeccCC
Q 032483 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKVRQ 138 (139)
Q Consensus 98 ~~~~~~lfV~nL~~~~t~~~L~~~F~~fG~v~~~~i~~d~~ 138 (139)
....++|||+|||+++++++|+++|++||.|..|.|++|+.
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~ 49 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRE 49 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSS
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCC
Confidence 34578999999999999999999999999999999999864
No 131
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.18 E-value=2.2e-11 Score=77.84 Aligned_cols=48 Identities=29% Similarity=0.434 Sum_probs=43.2
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHHc--CcccCCcEEEEeecCCCC
Q 032483 1 MPKDQGSKAHRGIGFITFASADSVENLMVD--THELGGSTVVVDRATPKE 48 (139)
Q Consensus 1 i~~d~~tg~srG~gFV~F~~~~~a~~Ai~~--~~~i~gr~i~v~~~~~~~ 48 (139)
|++|+.+|++||||||+|.+.++|++||+. +..|+|++|.|+++.++.
T Consensus 78 i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a~~~~ 127 (129)
T 2kxn_B 78 IVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSITKR 127 (129)
T ss_dssp EECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESCCSSSS
T ss_pred EEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCC
Confidence 467889999999999999999999999994 688999999999987653
No 132
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.18 E-value=4.2e-11 Score=72.32 Aligned_cols=41 Identities=15% Similarity=0.207 Sum_probs=37.0
Q ss_pred CCCceeEEeCCCCCCCHHHHHHHHhcCcceeEE-EEeccCCC
Q 032483 99 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDV-YVPKVRQH 139 (139)
Q Consensus 99 ~~~~~lfV~nL~~~~t~~~L~~~F~~fG~v~~~-~i~~d~~~ 139 (139)
...++|||+|||+.+++++|+++|++||.|.+| .|+.|+.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~ 54 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSET 54 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSS
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCC
Confidence 346899999999999999999999999999999 58888754
No 133
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.18 E-value=3.1e-11 Score=74.87 Aligned_cols=41 Identities=34% Similarity=0.602 Sum_probs=35.8
Q ss_pred CCCCceeEEeCCCCCCCHHHHHHHHhcCcceeEEEEeccCC
Q 032483 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKVRQ 138 (139)
Q Consensus 98 ~~~~~~lfV~nL~~~~t~~~L~~~F~~fG~v~~~~i~~d~~ 138 (139)
....++|||+|||+++++++|+++|++||.|.+|.|++|+.
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~ 62 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPL 62 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCC
Confidence 44578999999999999999999999999999999999875
No 134
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.18 E-value=1.2e-11 Score=73.91 Aligned_cols=48 Identities=25% Similarity=0.506 Sum_probs=39.8
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHHc--CcccCCcEEEEeecCCCCC
Q 032483 1 MPKDQGSKAHRGIGFITFASADSVENLMVD--THELGGSTVVVDRATPKED 49 (139)
Q Consensus 1 i~~d~~tg~srG~gFV~F~~~~~a~~Ai~~--~~~i~gr~i~v~~~~~~~~ 49 (139)
|++|+.||+++|||||+|.+.+ |++|+.. +..++|++|.|+++.++..
T Consensus 33 i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~~~ 82 (90)
T 2ki2_A 33 LIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPKKS 82 (90)
T ss_dssp ECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC-----
T ss_pred EEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCCCC
Confidence 4688899999999999999999 9999994 6889999999999876543
No 135
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.18 E-value=8.3e-11 Score=71.69 Aligned_cols=47 Identities=21% Similarity=0.502 Sum_probs=41.6
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHHc--CcccCCcEEEEeecCCCC
Q 032483 1 MPKDQGSKAHRGIGFITFASADSVENLMVD--THELGGSTVVVDRATPKE 48 (139)
Q Consensus 1 i~~d~~tg~srG~gFV~F~~~~~a~~Ai~~--~~~i~gr~i~v~~~~~~~ 48 (139)
|+++ .+|++||||||+|.+.++|++||.. ++.|+|+.|.|+++.++.
T Consensus 44 ~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 92 (101)
T 2fc9_A 44 VPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRG 92 (101)
T ss_dssp CCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECSSCC
T ss_pred EEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcCCCC
Confidence 4556 7899999999999999999999994 678999999999998764
No 136
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.18 E-value=5.4e-12 Score=80.36 Aligned_cols=46 Identities=22% Similarity=0.374 Sum_probs=40.8
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHHc-CcccCCcEEEEeecCCC
Q 032483 1 MPKDQGSKAHRGIGFITFASADSVENLMVD-THELGGSTVVVDRATPK 47 (139)
Q Consensus 1 i~~d~~tg~srG~gFV~F~~~~~a~~Ai~~-~~~i~gr~i~v~~~~~~ 47 (139)
|++|+. |++||||||+|.+.++|++||+. ...|+||.|.|..+.++
T Consensus 75 i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I~V~~a~~~ 121 (126)
T 2hgm_A 75 LPVDPE-GKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSSQE 121 (126)
T ss_dssp CCCCSS-SSSCSEEEEEESSTTHHHHHHTTTTCCBTTBCCCCEEECHH
T ss_pred EEECCC-CCCceEEEEEECCHHHHHHHHHHCCCEECCEEEEEEECCHH
Confidence 578877 99999999999999999999994 68899999999887644
No 137
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.18 E-value=3.4e-11 Score=73.54 Aligned_cols=40 Identities=28% Similarity=0.480 Sum_probs=37.2
Q ss_pred CCCceeEEeCCCCCCCHHHHHHHHhcCcceeEEEEeccCC
Q 032483 99 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKVRQ 138 (139)
Q Consensus 99 ~~~~~lfV~nL~~~~t~~~L~~~F~~fG~v~~~~i~~d~~ 138 (139)
...++|||+|||+.+++++|+++|++||.|+.|.|++|+.
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~ 49 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYE 49 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCC
Confidence 4578999999999999999999999999999999999864
No 138
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.17 E-value=2.1e-11 Score=73.42 Aligned_cols=45 Identities=27% Similarity=0.431 Sum_probs=40.8
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHHc--CcccCCcEEEEeecC
Q 032483 1 MPKDQGSKAHRGIGFITFASADSVENLMVD--THELGGSTVVVDRAT 45 (139)
Q Consensus 1 i~~d~~tg~srG~gFV~F~~~~~a~~Ai~~--~~~i~gr~i~v~~~~ 45 (139)
|++|+.+|+++|||||+|.+.++|++||+. +..++|++|.|+++.
T Consensus 47 i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 93 (95)
T 2cqc_A 47 IVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSGPS 93 (95)
T ss_dssp EEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCS
T ss_pred EEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEecC
Confidence 357889999999999999999999999994 688999999999875
No 139
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.17 E-value=3.9e-11 Score=72.53 Aligned_cols=38 Identities=18% Similarity=0.408 Sum_probs=36.0
Q ss_pred CceeEEeCCCCCCCHHHHHHHHhcCcceeEEEEeccCC
Q 032483 101 GKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKVRQ 138 (139)
Q Consensus 101 ~~~lfV~nL~~~~t~~~L~~~F~~fG~v~~~~i~~d~~ 138 (139)
+++|||+|||+.+++++|+++|++||.|.+|.|++|+.
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~ 39 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQ 39 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTT
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCC
Confidence 57999999999999999999999999999999999864
No 140
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.17 E-value=9e-11 Score=73.00 Aligned_cols=40 Identities=23% Similarity=0.393 Sum_probs=37.1
Q ss_pred CCCCceeEEeCCCCCCCHHHHHHHHhcCcceeEEEEeccC
Q 032483 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKVR 137 (139)
Q Consensus 98 ~~~~~~lfV~nL~~~~t~~~L~~~F~~fG~v~~~~i~~d~ 137 (139)
....++|||+|||+++++++|+++|++||.|.+|.|++|+
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~ 51 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK 51 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC
Confidence 3457899999999999999999999999999999999886
No 141
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.17 E-value=1.1e-11 Score=71.86 Aligned_cols=44 Identities=32% Similarity=0.549 Sum_probs=39.9
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHHc-CcccCCcEEEEeec
Q 032483 1 MPKDQGSKAHRGIGFITFASADSVENLMVD-THELGGSTVVVDRA 44 (139)
Q Consensus 1 i~~d~~tg~srG~gFV~F~~~~~a~~Ai~~-~~~i~gr~i~v~~~ 44 (139)
|++|+.+|+++|||||+|.+.++|++|++. .+.++|++|.|+++
T Consensus 32 i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~a 76 (77)
T 1uaw_A 32 VMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVA 76 (77)
T ss_dssp EECCCCSSSCSSEEEECCCCTTHHHHHHHTTTCCCSSCCCEEEEC
T ss_pred EecCCCCCCcCceEEEEEcCHHHHHHHHHhCCCccCCEEEEEEec
Confidence 467889999999999999999999999995 47899999999886
No 142
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.17 E-value=2.1e-11 Score=73.92 Aligned_cols=46 Identities=17% Similarity=0.249 Sum_probs=41.1
Q ss_pred CCCCCCCCccceEEEEECCHHHHHHHHHc--CcccCCcEEEEeecCCC
Q 032483 2 PKDQGSKAHRGIGFITFASADSVENLMVD--THELGGSTVVVDRATPK 47 (139)
Q Consensus 2 ~~d~~tg~srG~gFV~F~~~~~a~~Ai~~--~~~i~gr~i~v~~~~~~ 47 (139)
++|+.+|+++|||||+|.+.++|++||+. +..|+|+.|.|+++..+
T Consensus 48 ~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 95 (98)
T 2cqp_A 48 LKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLGSGP 95 (98)
T ss_dssp EEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEESSCS
T ss_pred EEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEcCCC
Confidence 56788999999999999999999999984 57899999999998644
No 143
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.17 E-value=2.1e-11 Score=72.56 Aligned_cols=47 Identities=21% Similarity=0.321 Sum_probs=41.4
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHH-cCcccCCcEEEEeecCCC
Q 032483 1 MPKDQGSKAHRGIGFITFASADSVENLMV-DTHELGGSTVVVDRATPK 47 (139)
Q Consensus 1 i~~d~~tg~srG~gFV~F~~~~~a~~Ai~-~~~~i~gr~i~v~~~~~~ 47 (139)
|++|+.+|+++|||||+|.+.++|++|+. ++..++|+.|.|.++.+.
T Consensus 38 i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~g~~~~g~~l~V~~a~~~ 85 (89)
T 3ucg_A 38 ILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRTN 85 (89)
T ss_dssp EEESCSSSSCCEEEEEEESSTHHHHHHGGGTTCEETTEECEEEETTTT
T ss_pred EEecCCCCCcceEEEEEECCHHHHHHHHhcCCCEECCcEEEEEEccCC
Confidence 35788899999999999999999999995 368899999999998654
No 144
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.17 E-value=1.6e-11 Score=75.46 Aligned_cols=44 Identities=18% Similarity=0.293 Sum_probs=39.4
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHHc-CcccCCcEEEEeecC
Q 032483 1 MPKDQGSKAHRGIGFITFASADSVENLMVD-THELGGSTVVVDRAT 45 (139)
Q Consensus 1 i~~d~~tg~srG~gFV~F~~~~~a~~Ai~~-~~~i~gr~i~v~~~~ 45 (139)
|++|+. |++||||||+|.+.++|++||.. ++.++|+.|.|+++.
T Consensus 43 i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~l~V~~~~ 87 (103)
T 1s79_A 43 MRRTLH-KAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKD 87 (103)
T ss_dssp EECCCT-TSCCCEEEEEESSHHHHHHHHTSSCCCCTTTTCEEEEHH
T ss_pred EEECCC-CCCccEEEEEECCHHHHHHHHHcCCCEECCEEEEEEEch
Confidence 467877 99999999999999999999994 689999999999864
No 145
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.17 E-value=5.8e-11 Score=72.97 Aligned_cols=42 Identities=29% Similarity=0.439 Sum_probs=38.1
Q ss_pred CCCCceeEEeCCCCCCCHHHHHHHHhcCcceeEEEEeccCCC
Q 032483 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKVRQH 139 (139)
Q Consensus 98 ~~~~~~lfV~nL~~~~t~~~L~~~F~~fG~v~~~~i~~d~~~ 139 (139)
....++|||+|||+.+++++|+++|++||.|.+|.|++|+.|
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~ 61 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRT 61 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCC
Confidence 345789999999999999999999999999999999998753
No 146
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.17 E-value=1.1e-10 Score=71.44 Aligned_cols=41 Identities=20% Similarity=0.330 Sum_probs=37.2
Q ss_pred CCCCceeEEeCCCCCCCHHHHHHHHhcCcceeEEEEeccCCC
Q 032483 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKVRQH 139 (139)
Q Consensus 98 ~~~~~~lfV~nL~~~~t~~~L~~~F~~fG~v~~~~i~~d~~~ 139 (139)
....++|||+|||+++++++|+++|++|| |..|.|++|+.|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~ 52 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDT 52 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSS
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCC
Confidence 45578999999999999999999999997 999999998753
No 147
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.17 E-value=6.4e-11 Score=75.61 Aligned_cols=42 Identities=31% Similarity=0.278 Sum_probs=38.3
Q ss_pred CCCCceeEEeCCCCCCCHHHHHHHHhcCcceeEEEEeccCCC
Q 032483 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKVRQH 139 (139)
Q Consensus 98 ~~~~~~lfV~nL~~~~t~~~L~~~F~~fG~v~~~~i~~d~~~ 139 (139)
....++|||+|||+++++++|+++|++||+|..|.|++|+.|
T Consensus 43 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~t 84 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQS 84 (129)
T ss_dssp CCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC
Confidence 455789999999999999999999999999999999998653
No 148
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.16 E-value=1.4e-10 Score=74.55 Aligned_cols=41 Identities=27% Similarity=0.467 Sum_probs=37.9
Q ss_pred CCCCceeEEeCCCCCCCHHHHHHHHhcCcceeEEEEeccCC
Q 032483 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKVRQ 138 (139)
Q Consensus 98 ~~~~~~lfV~nL~~~~t~~~L~~~F~~fG~v~~~~i~~d~~ 138 (139)
....++|||+|||+.+++++|+++|++||.|..+.|++|+.
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~ 100 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYE 100 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTT
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCC
Confidence 45578999999999999999999999999999999999864
No 149
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.16 E-value=6.8e-11 Score=73.66 Aligned_cols=41 Identities=27% Similarity=0.476 Sum_probs=37.4
Q ss_pred CCCceeEEeCCCCCCCHHHHHHHHhcCcceeEEEEeccCCC
Q 032483 99 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKVRQH 139 (139)
Q Consensus 99 ~~~~~lfV~nL~~~~t~~~L~~~F~~fG~v~~~~i~~d~~~ 139 (139)
...++|||+|||+++++++|+++|++||.|..|.|++|+.|
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~ 63 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNS 63 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCC
Confidence 34679999999999999999999999999999999988753
No 150
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.16 E-value=4.3e-11 Score=75.80 Aligned_cols=49 Identities=14% Similarity=0.276 Sum_probs=44.0
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHH--cCcccCCcEEEEeecCCCCC
Q 032483 1 MPKDQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKED 49 (139)
Q Consensus 1 i~~d~~tg~srG~gFV~F~~~~~a~~Ai~--~~~~i~gr~i~v~~~~~~~~ 49 (139)
|++|+.+|+++|||||+|.+.++|++||+ ++..|+|+.|.|+++.++..
T Consensus 54 i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 104 (126)
T 3ex7_B 54 LNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFVRGP 104 (126)
T ss_dssp CCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEESEESSS
T ss_pred EEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEecCCCC
Confidence 57888999999999999999999999998 47889999999999976643
No 151
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.16 E-value=2.8e-11 Score=72.03 Aligned_cols=37 Identities=38% Similarity=0.853 Sum_probs=35.0
Q ss_pred CCceeEEeCCCCCCCHHHHHHHHhcCcceeEEEEecc
Q 032483 100 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKV 136 (139)
Q Consensus 100 ~~~~lfV~nL~~~~t~~~L~~~F~~fG~v~~~~i~~d 136 (139)
..++|||+|||+++++++|+++|++||.|.+|.|++|
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~ 40 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP 40 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC
Confidence 4689999999999999999999999999999999876
No 152
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.16 E-value=4.2e-11 Score=78.78 Aligned_cols=47 Identities=28% Similarity=0.572 Sum_probs=43.1
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHHc-CcccCCcEEEEeecCCC
Q 032483 1 MPKDQGSKAHRGIGFITFASADSVENLMVD-THELGGSTVVVDRATPK 47 (139)
Q Consensus 1 i~~d~~tg~srG~gFV~F~~~~~a~~Ai~~-~~~i~gr~i~v~~~~~~ 47 (139)
|++|+.+|+++|||||+|.+.++|++|++. +..++|++|.|+++.|+
T Consensus 119 i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 119 LMLDKDTGQSRGFGFVTYDSADAVDRVCQNKFIDFKDRKIEIKRAEPR 166 (167)
T ss_dssp CCCSSSSSTTSEEEEEEESSHHHHHHHHHCSEECSSSSCEEEEECCCC
T ss_pred EEEcCCCCccceEEEEEECCHHHHHHHHhCCCEEeCCeEEEEeecCCC
Confidence 568889999999999999999999999994 57899999999999876
No 153
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.16 E-value=1.9e-11 Score=70.79 Aligned_cols=37 Identities=35% Similarity=0.635 Sum_probs=35.0
Q ss_pred ceeEEeCCCCCCCHHHHHHHHhcCcceeEEEEeccCC
Q 032483 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKVRQ 138 (139)
Q Consensus 102 ~~lfV~nL~~~~t~~~L~~~F~~fG~v~~~~i~~d~~ 138 (139)
++|||+|||+++++++|+++|++||+|.+|.|++|+.
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~ 37 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPL 37 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCC
Confidence 4799999999999999999999999999999999874
No 154
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.16 E-value=4.5e-11 Score=74.54 Aligned_cols=40 Identities=18% Similarity=0.453 Sum_probs=36.4
Q ss_pred CCCCceeEEeCCCCC-CCHHHHHHHHhcCcceeEEEEeccC
Q 032483 98 QRIGKKIFVGRLPQE-ATAEDLRRYFSRFGRILDVYVPKVR 137 (139)
Q Consensus 98 ~~~~~~lfV~nL~~~-~t~~~L~~~F~~fG~v~~~~i~~d~ 137 (139)
..++++|||+|||++ +++++|+++|++||.|.+|.|++++
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~k 62 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRMK 62 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETTT
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecCC
Confidence 345789999999998 9999999999999999999998764
No 155
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.16 E-value=4.1e-11 Score=71.10 Aligned_cols=38 Identities=29% Similarity=0.558 Sum_probs=35.8
Q ss_pred CceeEEeCCCCCCCHHHHHHHHhcCcceeEEEEeccCC
Q 032483 101 GKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKVRQ 138 (139)
Q Consensus 101 ~~~lfV~nL~~~~t~~~L~~~F~~fG~v~~~~i~~d~~ 138 (139)
.++|||+|||+++++++|+++|++||.|.+|.|+.|+.
T Consensus 4 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~ 41 (88)
T 4a8x_A 4 PTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERM 41 (88)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCC
Confidence 57999999999999999999999999999999998864
No 156
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.16 E-value=9.8e-11 Score=71.14 Aligned_cols=42 Identities=26% Similarity=0.397 Sum_probs=38.2
Q ss_pred CCCCceeEEeCCCCCCCHHHHHHHHhcCcceeE--------EEEeccCCC
Q 032483 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILD--------VYVPKVRQH 139 (139)
Q Consensus 98 ~~~~~~lfV~nL~~~~t~~~L~~~F~~fG~v~~--------~~i~~d~~~ 139 (139)
....++|||+|||+++++++|+++|++||.|.. |.|++|+.|
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~ 59 (99)
T 2la6_A 10 HSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRET 59 (99)
T ss_dssp CCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCC
Confidence 455789999999999999999999999999999 999998653
No 157
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.15 E-value=8.5e-12 Score=77.89 Aligned_cols=41 Identities=12% Similarity=0.215 Sum_probs=36.4
Q ss_pred CCCccceEEEEECCHHHHHHHHHc--CcccCCcEEEEeecCCC
Q 032483 7 SKAHRGIGFITFASADSVENLMVD--THELGGSTVVVDRATPK 47 (139)
Q Consensus 7 tg~srG~gFV~F~~~~~a~~Ai~~--~~~i~gr~i~v~~~~~~ 47 (139)
++.++|||||+|.+.++|.+|+.. +..++|+.|.|.++.++
T Consensus 43 ~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 85 (115)
T 3lqv_A 43 TPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNAN 85 (115)
T ss_dssp STTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCHH
T ss_pred CCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCC
Confidence 356799999999999999999994 78899999999998754
No 158
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.15 E-value=6.4e-11 Score=70.42 Aligned_cols=38 Identities=29% Similarity=0.391 Sum_probs=35.9
Q ss_pred CceeEEeCCCCCCCHHHHHHHHhcCcceeEEEEeccCC
Q 032483 101 GKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKVRQ 138 (139)
Q Consensus 101 ~~~lfV~nL~~~~t~~~L~~~F~~fG~v~~~~i~~d~~ 138 (139)
.++|||+|||+.+++++|+++|++||.|.+|.|++|+.
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~ 43 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKF 43 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCC
Confidence 57999999999999999999999999999999999864
No 159
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.15 E-value=1.1e-10 Score=68.85 Aligned_cols=40 Identities=30% Similarity=0.485 Sum_probs=36.6
Q ss_pred CCCCceeEEeCCCCCCCHHHHHHHHhcCcceeEEEEeccC
Q 032483 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKVR 137 (139)
Q Consensus 98 ~~~~~~lfV~nL~~~~t~~~L~~~F~~fG~v~~~~i~~d~ 137 (139)
....++|||+|||+.+++++|+++|++||.|.+|.+++++
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~k 48 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQ 48 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGGG
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECCC
Confidence 4557899999999999999999999999999999998764
No 160
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.15 E-value=6.9e-11 Score=73.13 Aligned_cols=41 Identities=22% Similarity=0.422 Sum_probs=37.7
Q ss_pred CCCCceeEEeCCCCCCCHHHHHHHHhcCcceeEEEEeccCC
Q 032483 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKVRQ 138 (139)
Q Consensus 98 ~~~~~~lfV~nL~~~~t~~~L~~~F~~fG~v~~~~i~~d~~ 138 (139)
....++|||+|||+.+++++|+++|++||.|.+|.|+.|+.
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~ 63 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRR 63 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCC
Confidence 44578999999999999999999999999999999998864
No 161
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.15 E-value=7.1e-11 Score=70.84 Aligned_cols=39 Identities=23% Similarity=0.509 Sum_probs=35.8
Q ss_pred CCCCceeEEeCCCCCCCHHHHHHHHhcCcceeEEEEecc
Q 032483 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKV 136 (139)
Q Consensus 98 ~~~~~~lfV~nL~~~~t~~~L~~~F~~fG~v~~~~i~~d 136 (139)
....++|||+|||+++++++|+++|++||.|..|.|+++
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~~ 45 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD 45 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECC
Confidence 345789999999999999999999999999999999865
No 162
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.15 E-value=1.6e-10 Score=69.88 Aligned_cols=39 Identities=28% Similarity=0.406 Sum_probs=35.8
Q ss_pred CCCceeEEeCCCCCCCHHHHHHHHhcCcceeEEEEeccC
Q 032483 99 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKVR 137 (139)
Q Consensus 99 ~~~~~lfV~nL~~~~t~~~L~~~F~~fG~v~~~~i~~d~ 137 (139)
.+.++|||+|||+++++++|+++|++||.|.+|.++.++
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~~ 53 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKGD 53 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCCC
Confidence 446899999999999999999999999999999998763
No 163
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.15 E-value=2.3e-11 Score=73.27 Aligned_cols=44 Identities=18% Similarity=0.310 Sum_probs=39.9
Q ss_pred CCCCCCCCccceEEEEECCHHHHHHHHHc--CcccCCcEEEEeecC
Q 032483 2 PKDQGSKAHRGIGFITFASADSVENLMVD--THELGGSTVVVDRAT 45 (139)
Q Consensus 2 ~~d~~tg~srG~gFV~F~~~~~a~~Ai~~--~~~i~gr~i~v~~~~ 45 (139)
++|+.+|++||||||+|.+.++|++||+. ++.|+||+|.|.++.
T Consensus 48 ~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 48 LKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp EEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred EEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 56788999999999999999999999984 689999999999865
No 164
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.15 E-value=1.8e-11 Score=75.03 Aligned_cols=48 Identities=21% Similarity=0.429 Sum_probs=42.6
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHHc--CcccCCcEEEEeecCCCC
Q 032483 1 MPKDQGSKAHRGIGFITFASADSVENLMVD--THELGGSTVVVDRATPKE 48 (139)
Q Consensus 1 i~~d~~tg~srG~gFV~F~~~~~a~~Ai~~--~~~i~gr~i~v~~~~~~~ 48 (139)
|++|+.+|+++|||||+|.+.++|++||+. +..++|+.|.|+++.++.
T Consensus 40 i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 89 (104)
T 1p1t_A 40 LVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEK 89 (104)
T ss_dssp EEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETTCTT
T ss_pred EEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCCCcc
Confidence 356788999999999999999999999984 688999999999987653
No 165
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.14 E-value=2.1e-11 Score=74.45 Aligned_cols=39 Identities=21% Similarity=0.353 Sum_probs=36.8
Q ss_pred CceeEEeCCCC------CCCHHHHHHHHhcCcceeEEEEeccCCC
Q 032483 101 GKKIFVGRLPQ------EATAEDLRRYFSRFGRILDVYVPKVRQH 139 (139)
Q Consensus 101 ~~~lfV~nL~~------~~t~~~L~~~F~~fG~v~~~~i~~d~~~ 139 (139)
.++|||+|||+ ++++++|+++|++||.|.+|+|++|+.|
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~t 50 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEAT 50 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTT
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCC
Confidence 67999999999 9999999999999999999999999864
No 166
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.14 E-value=5.4e-11 Score=75.12 Aligned_cols=47 Identities=26% Similarity=0.341 Sum_probs=41.4
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHH-cCcccCCcEEEEeecCCC
Q 032483 1 MPKDQGSKAHRGIGFITFASADSVENLMV-DTHELGGSTVVVDRATPK 47 (139)
Q Consensus 1 i~~d~~tg~srG~gFV~F~~~~~a~~Ai~-~~~~i~gr~i~v~~~~~~ 47 (139)
|++|+.+|+++|||||+|.+.++|++||. +++.|+|+.|.|.++.+.
T Consensus 68 i~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~~ 115 (124)
T 2jwn_A 68 ILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGRTIKVLPKRTN 115 (124)
T ss_dssp EEEECTTSSCEEEEEEEESSHHHHHHHHTTTTCEETTEECEEEESSCC
T ss_pred EEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECCCC
Confidence 35678899999999999999999999995 368899999999998754
No 167
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.14 E-value=3.4e-11 Score=72.02 Aligned_cols=38 Identities=26% Similarity=0.407 Sum_probs=34.3
Q ss_pred ceeEEeCCCCCCCHHHHHHHHhcCc--ceeEEEEeccCCC
Q 032483 102 KKIFVGRLPQEATAEDLRRYFSRFG--RILDVYVPKVRQH 139 (139)
Q Consensus 102 ~~lfV~nL~~~~t~~~L~~~F~~fG--~v~~~~i~~d~~~ 139 (139)
.+|||+|||+++++++|+++|++|| .|.+|+|++|+.|
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~ 41 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRAN 41 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTT
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCC
Confidence 4799999999999999999999999 9999999998754
No 168
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.14 E-value=6.3e-11 Score=71.78 Aligned_cols=39 Identities=26% Similarity=0.394 Sum_probs=36.4
Q ss_pred CCceeEEeCCCCCCCHHHHHHHHhcCcceeEEEEeccCC
Q 032483 100 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKVRQ 138 (139)
Q Consensus 100 ~~~~lfV~nL~~~~t~~~L~~~F~~fG~v~~~~i~~d~~ 138 (139)
..++|||+|||+++++++|+++|++||.|..|.|++|+.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~ 42 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKN 42 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC
Confidence 468999999999999999999999999999999998764
No 169
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.14 E-value=1.1e-10 Score=71.40 Aligned_cols=39 Identities=28% Similarity=0.339 Sum_probs=36.4
Q ss_pred CCCCceeEEeCCCCCCCHHHHHHHHhcCcceeEEEEecc
Q 032483 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKV 136 (139)
Q Consensus 98 ~~~~~~lfV~nL~~~~t~~~L~~~F~~fG~v~~~~i~~d 136 (139)
....++|||+|||+.+++++|+++|++||.|..|.|+.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~ 50 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME 50 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC
Confidence 456789999999999999999999999999999999976
No 170
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.13 E-value=9.1e-11 Score=74.27 Aligned_cols=41 Identities=29% Similarity=0.452 Sum_probs=37.7
Q ss_pred CCCCceeEEeCCCCCCCHHHHHHHHhcCcceeEEEEeccCC
Q 032483 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKVRQ 138 (139)
Q Consensus 98 ~~~~~~lfV~nL~~~~t~~~L~~~F~~fG~v~~~~i~~d~~ 138 (139)
....++|||+|||+.+|+++|+++|++||.|..|.|++|+.
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~ 59 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRR 59 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC
Confidence 44578999999999999999999999999999999998864
No 171
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.13 E-value=3.5e-11 Score=69.44 Aligned_cols=36 Identities=39% Similarity=0.704 Sum_probs=34.3
Q ss_pred eeEEeCCCCCCCHHHHHHHHhcCcceeEEEEeccCC
Q 032483 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKVRQ 138 (139)
Q Consensus 103 ~lfV~nL~~~~t~~~L~~~F~~fG~v~~~~i~~d~~ 138 (139)
+|||+|||+++++++|+++|++||+|.+|.|++|+.
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~ 36 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKT 36 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSS
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCC
Confidence 599999999999999999999999999999999874
No 172
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.13 E-value=2e-10 Score=71.10 Aligned_cols=41 Identities=27% Similarity=0.378 Sum_probs=37.6
Q ss_pred CCCCceeEEeCCCCCCCHHHHHHHHhcCcceeEEEEeccCC
Q 032483 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKVRQ 138 (139)
Q Consensus 98 ~~~~~~lfV~nL~~~~t~~~L~~~F~~fG~v~~~~i~~d~~ 138 (139)
....++|||+|||+.+++++|+++|++||.|..|.|++|+.
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~ 63 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSE 63 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCC
Confidence 34568999999999999999999999999999999998864
No 173
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.13 E-value=4e-11 Score=72.36 Aligned_cols=40 Identities=30% Similarity=0.387 Sum_probs=36.8
Q ss_pred CCCceeEEeCCCCCCCHHHHHHHHhcCcceeEE-EEeccCC
Q 032483 99 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDV-YVPKVRQ 138 (139)
Q Consensus 99 ~~~~~lfV~nL~~~~t~~~L~~~F~~fG~v~~~-~i~~d~~ 138 (139)
...++|||+|||+++++++|+++|++||.|..| .|++|+.
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~ 43 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPD 43 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCC
Confidence 346899999999999999999999999999999 9999854
No 174
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.13 E-value=1.1e-10 Score=71.76 Aligned_cols=40 Identities=25% Similarity=0.414 Sum_probs=37.3
Q ss_pred CCCCceeEEeCCCCCCCHHHHHHHHhcCcceeEEEEeccC
Q 032483 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKVR 137 (139)
Q Consensus 98 ~~~~~~lfV~nL~~~~t~~~L~~~F~~fG~v~~~~i~~d~ 137 (139)
....++|||+|||+.+++++|+++|++||.|.+|.|++|+
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~ 65 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR 65 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC
Confidence 4557899999999999999999999999999999999886
No 175
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.12 E-value=1.3e-11 Score=79.59 Aligned_cols=46 Identities=17% Similarity=0.272 Sum_probs=40.4
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHH-cCcccCCcEEEEeecCCC
Q 032483 1 MPKDQGSKAHRGIGFITFASADSVENLMV-DTHELGGSTVVVDRATPK 47 (139)
Q Consensus 1 i~~d~~tg~srG~gFV~F~~~~~a~~Ai~-~~~~i~gr~i~v~~~~~~ 47 (139)
|++|+. |++||||||+|.+.++|++||+ ++..|+||.|.|.++.++
T Consensus 79 i~~d~~-g~srG~aFV~F~~~e~a~~Al~~~g~~l~gr~i~V~~a~~~ 125 (136)
T 2hgl_A 79 FIYTRE-GRQSGEAFVELGSEDDVKMALKKDRESMGHRYIEVFKSHRT 125 (136)
T ss_dssp EEECSS-SCEEEEEEEECSSHHHHHHHHTTTEEESSSSEEEEEECCHH
T ss_pred EEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCEECCEEEEEEECChH
Confidence 356777 9999999999999999999999 457899999999988654
No 176
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.12 E-value=1.1e-10 Score=71.55 Aligned_cols=39 Identities=33% Similarity=0.373 Sum_probs=35.7
Q ss_pred CCCCceeEEeCCCCCCCHHHHHHHHhcCcceeEEEEecc
Q 032483 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKV 136 (139)
Q Consensus 98 ~~~~~~lfV~nL~~~~t~~~L~~~F~~fG~v~~~~i~~d 136 (139)
....++|||+|||+++|+++|+++|++||.|..|.|+++
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~ 46 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKD 46 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC
Confidence 345789999999999999999999999999999999865
No 177
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.12 E-value=3.8e-11 Score=72.80 Aligned_cols=43 Identities=14% Similarity=0.337 Sum_probs=38.7
Q ss_pred CCCccceEEEEECCHHHHHHHHHc--CcccCCcEEEEeecCCCCC
Q 032483 7 SKAHRGIGFITFASADSVENLMVD--THELGGSTVVVDRATPKED 49 (139)
Q Consensus 7 tg~srG~gFV~F~~~~~a~~Ai~~--~~~i~gr~i~v~~~~~~~~ 49 (139)
|++++|||||+|.+.++|++||+. ++.|+|++|.|+++.++..
T Consensus 46 t~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 90 (98)
T 2cpf_A 46 VLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVRISERATK 90 (98)
T ss_dssp CEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEECSSCSSC
T ss_pred CcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEccCCCC
Confidence 779999999999999999999994 6889999999999877643
No 178
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.12 E-value=1.3e-10 Score=71.18 Aligned_cols=40 Identities=18% Similarity=0.211 Sum_probs=37.0
Q ss_pred CCCCceeEEeCCCCCCCHHHHHHHHhc-CcceeEEEEeccC
Q 032483 98 QRIGKKIFVGRLPQEATAEDLRRYFSR-FGRILDVYVPKVR 137 (139)
Q Consensus 98 ~~~~~~lfV~nL~~~~t~~~L~~~F~~-fG~v~~~~i~~d~ 137 (139)
....++|||+|||+++++++|+++|++ ||.|.+|.|++|+
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~ 46 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ 46 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC
Confidence 345789999999999999999999999 9999999999886
No 179
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.12 E-value=1.3e-10 Score=72.36 Aligned_cols=40 Identities=23% Similarity=0.539 Sum_probs=36.9
Q ss_pred CCCceeEEeCCCCCCCHHHHHHHHhcCcceeEEEEeccCC
Q 032483 99 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKVRQ 138 (139)
Q Consensus 99 ~~~~~lfV~nL~~~~t~~~L~~~F~~fG~v~~~~i~~d~~ 138 (139)
...++|||+|||+.+++++|+++|++||.|.+|.|++|..
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~ 45 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPE 45 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCC
Confidence 4468999999999999999999999999999999998764
No 180
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.12 E-value=1e-10 Score=71.71 Aligned_cols=39 Identities=23% Similarity=0.372 Sum_probs=35.1
Q ss_pred CCCCceeEEeCCCCCCCHHHHHHHHhcCcceeEEEEeccC
Q 032483 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKVR 137 (139)
Q Consensus 98 ~~~~~~lfV~nL~~~~t~~~L~~~F~~fG~v~~~~i~~d~ 137 (139)
....++|||+|||+++|+++|+++|++||. ++|.|++|+
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~ 50 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGP 50 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECC
Confidence 345689999999999999999999999995 599999986
No 181
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.12 E-value=7e-11 Score=73.80 Aligned_cols=40 Identities=33% Similarity=0.597 Sum_probs=37.1
Q ss_pred CCCceeEEeCCCCCCCHHHHHHHHhcCcceeEEEEeccCC
Q 032483 99 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKVRQ 138 (139)
Q Consensus 99 ~~~~~lfV~nL~~~~t~~~L~~~F~~fG~v~~~~i~~d~~ 138 (139)
...++|||+|||+++++++|+++|++||.|..|.|++|+.
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~ 64 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPA 64 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCC
Confidence 3458999999999999999999999999999999999865
No 182
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.12 E-value=8.5e-11 Score=71.88 Aligned_cols=44 Identities=20% Similarity=0.402 Sum_probs=39.8
Q ss_pred CCCccceEEEEECCHHHHHHHHHc--CcccCCcEEEEeecCCCCCC
Q 032483 7 SKAHRGIGFITFASADSVENLMVD--THELGGSTVVVDRATPKEDD 50 (139)
Q Consensus 7 tg~srG~gFV~F~~~~~a~~Ai~~--~~~i~gr~i~v~~~~~~~~~ 50 (139)
+|+++|||||+|.+.++|++||+. +..|+|++|.|.++.++...
T Consensus 51 ~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 96 (103)
T 2d9p_A 51 GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEER 96 (103)
T ss_dssp SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECSSCCCC
T ss_pred CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEecccccC
Confidence 899999999999999999999994 68899999999999877543
No 183
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.11 E-value=8.7e-11 Score=72.96 Aligned_cols=47 Identities=11% Similarity=0.142 Sum_probs=40.1
Q ss_pred CCCCCCC---CccceEEEEECCHHHHHHHHHc--CcccCCcEEEEeecCCCC
Q 032483 2 PKDQGSK---AHRGIGFITFASADSVENLMVD--THELGGSTVVVDRATPKE 48 (139)
Q Consensus 2 ~~d~~tg---~srG~gFV~F~~~~~a~~Ai~~--~~~i~gr~i~v~~~~~~~ 48 (139)
++|+.++ ++||||||+|.+.++|++||+. ++.|+|++|.|.++.++.
T Consensus 51 ~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~a~~k~ 102 (111)
T 2cpi_A 51 NNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTLKASLGTTKY 102 (111)
T ss_dssp ECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEESCCCCS
T ss_pred ecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEEEEEEeccccc
Confidence 4566644 6679999999999999999994 688999999999998774
No 184
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.11 E-value=2.7e-11 Score=74.81 Aligned_cols=46 Identities=17% Similarity=0.218 Sum_probs=40.7
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHH-cCcccCCcEEEEeecCCC
Q 032483 1 MPKDQGSKAHRGIGFITFASADSVENLMV-DTHELGGSTVVVDRATPK 47 (139)
Q Consensus 1 i~~d~~tg~srG~gFV~F~~~~~a~~Ai~-~~~~i~gr~i~v~~~~~~ 47 (139)
|++|+. |++||||||+|.+.++|++||+ .+..++||.|.|.++.++
T Consensus 46 i~~~~~-g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~a~~~ 92 (107)
T 2lmi_A 46 FLLNRD-GKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYEINNE 92 (107)
T ss_dssp CCCCTT-STTCSEEEEEBSSHHHHHHHHTTTTCCSSSSCCCCEECCHH
T ss_pred EEECCC-CCEeeEEEEEECCHHHHHHHHHhCcceeCCeEEEEEECCHH
Confidence 567877 9999999999999999999999 457899999999988654
No 185
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.11 E-value=1.6e-10 Score=70.14 Aligned_cols=40 Identities=30% Similarity=0.707 Sum_probs=36.5
Q ss_pred CCCCceeEEeCCCCCCCHHHHHHHHhcCcceeEEEEeccC
Q 032483 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKVR 137 (139)
Q Consensus 98 ~~~~~~lfV~nL~~~~t~~~L~~~F~~fG~v~~~~i~~d~ 137 (139)
....++|||+|||+.+++++|+++|++||.|..|.|++++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~k 51 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDK 51 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETTT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecCC
Confidence 3456899999999999999999999999999999998764
No 186
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.11 E-value=1.5e-10 Score=73.16 Aligned_cols=48 Identities=17% Similarity=0.185 Sum_probs=42.1
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHH--cCcccCCcEEEEeecCCCCC
Q 032483 1 MPKDQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKED 49 (139)
Q Consensus 1 i~~d~~tg~srG~gFV~F~~~~~a~~Ai~--~~~~i~gr~i~v~~~~~~~~ 49 (139)
|++|+ +|++||||||+|.+.++|++||+ ++..++|+.|.|.++.+...
T Consensus 67 i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 116 (124)
T 2kt5_A 67 VDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVASQID 116 (124)
T ss_dssp EECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEECCTTC
T ss_pred EEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeCCCCC
Confidence 35677 99999999999999999999999 46889999999999976543
No 187
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.11 E-value=8.7e-11 Score=75.53 Aligned_cols=48 Identities=27% Similarity=0.431 Sum_probs=43.2
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHHc--CcccCCcEEEEeecCCCC
Q 032483 1 MPKDQGSKAHRGIGFITFASADSVENLMVD--THELGGSTVVVDRATPKE 48 (139)
Q Consensus 1 i~~d~~tg~srG~gFV~F~~~~~a~~Ai~~--~~~i~gr~i~v~~~~~~~ 48 (139)
|++|+.+|++||||||+|.+.++|++||+. +..|+|++|.|+++.++.
T Consensus 79 i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~ 128 (135)
T 2lea_A 79 IPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGR 128 (135)
T ss_dssp CCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCC
T ss_pred EEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCC
Confidence 578889999999999999999999999984 688999999999987653
No 188
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.11 E-value=5.6e-11 Score=74.05 Aligned_cols=47 Identities=21% Similarity=0.418 Sum_probs=42.1
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHH-cCcccCCcEEEEeecCCC
Q 032483 1 MPKDQGSKAHRGIGFITFASADSVENLMV-DTHELGGSTVVVDRATPK 47 (139)
Q Consensus 1 i~~d~~tg~srG~gFV~F~~~~~a~~Ai~-~~~~i~gr~i~v~~~~~~ 47 (139)
|++|+.||+++|||||+|.+.++|++||. +++.|+|+.|.|+++.++
T Consensus 57 i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~~ 104 (114)
T 2cq4_A 57 IISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAE 104 (114)
T ss_dssp ECCSCCSSSCCCCEEEEESCGGGHHHHHHHTTEEETTEEEEEEEHHHH
T ss_pred EEecCCCCccCcEEEEEeCcHHHHHHHHHcCCCEeCCeEEEEEecCCC
Confidence 46889999999999999999999999995 368899999999998654
No 189
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.11 E-value=3.8e-11 Score=72.89 Aligned_cols=47 Identities=21% Similarity=0.299 Sum_probs=41.8
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHHc--CcccCCcE----EEEeecCCC
Q 032483 1 MPKDQGSKAHRGIGFITFASADSVENLMVD--THELGGST----VVVDRATPK 47 (139)
Q Consensus 1 i~~d~~tg~srG~gFV~F~~~~~a~~Ai~~--~~~i~gr~----i~v~~~~~~ 47 (139)
|++|+.||+++|||||+|.+.++|++||+. +..++|+. |.|.++.+.
T Consensus 42 i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l~v~~a~~~ 94 (99)
T 2div_A 42 IIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYS 94 (99)
T ss_dssp EEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEECCEEETTCC
T ss_pred EeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeEEEeecCCC
Confidence 467889999999999999999999999994 68899999 999988654
No 190
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.11 E-value=4.8e-11 Score=74.75 Aligned_cols=44 Identities=18% Similarity=0.336 Sum_probs=40.2
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHHc--CcccCCcEEEEeec
Q 032483 1 MPKDQGSKAHRGIGFITFASADSVENLMVD--THELGGSTVVVDRA 44 (139)
Q Consensus 1 i~~d~~tg~srG~gFV~F~~~~~a~~Ai~~--~~~i~gr~i~v~~~ 44 (139)
|++|+.+|++||||||+|.+.++|++||+. +..|+|+.|.|+++
T Consensus 72 i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 117 (118)
T 2khc_A 72 VFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQLK 117 (118)
T ss_dssp ECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEEC
T ss_pred EEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEec
Confidence 467889999999999999999999999994 68899999999876
No 191
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.11 E-value=3.3e-11 Score=69.48 Aligned_cols=36 Identities=36% Similarity=0.732 Sum_probs=34.2
Q ss_pred eeEEeCCCCCCCHHHHHHHHhcCcceeEEEEeccCC
Q 032483 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKVRQ 138 (139)
Q Consensus 103 ~lfV~nL~~~~t~~~L~~~F~~fG~v~~~~i~~d~~ 138 (139)
+|||+|||+++++++|+++|++||+|.+|.+++|+.
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~ 36 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNK 36 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC
Confidence 599999999999999999999999999999998865
No 192
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.10 E-value=1.1e-10 Score=73.36 Aligned_cols=41 Identities=20% Similarity=0.242 Sum_probs=37.2
Q ss_pred CCCCceeEEeCCCCCCCHHHHHHHHhcCcc---eeEEEEeccCC
Q 032483 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGR---ILDVYVPKVRQ 138 (139)
Q Consensus 98 ~~~~~~lfV~nL~~~~t~~~L~~~F~~fG~---v~~~~i~~d~~ 138 (139)
....++|||+|||+++|+++|+++|+.||. |..|+|++|++
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~ 57 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE 57 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC
Confidence 345789999999999999999999999999 89999998864
No 193
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.10 E-value=1.1e-10 Score=72.78 Aligned_cols=40 Identities=13% Similarity=0.029 Sum_probs=36.7
Q ss_pred CCCCceeEEeCCCCCCCHHHHHHHHhcCcce-eEEEEeccC
Q 032483 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRI-LDVYVPKVR 137 (139)
Q Consensus 98 ~~~~~~lfV~nL~~~~t~~~L~~~F~~fG~v-~~~~i~~d~ 137 (139)
....++|||+|||+++|+++|+++|++||.| ..|.|++|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~ 52 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN 52 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC
Confidence 3446899999999999999999999999999 899999886
No 194
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.10 E-value=1.9e-10 Score=68.83 Aligned_cols=38 Identities=26% Similarity=0.304 Sum_probs=35.4
Q ss_pred CCCceeEEeCCCCCCCHHHHHHHHhcCcceeEEEEecc
Q 032483 99 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKV 136 (139)
Q Consensus 99 ~~~~~lfV~nL~~~~t~~~L~~~F~~fG~v~~~~i~~d 136 (139)
...++|||+|||+++++++|+++|++||.|.+|.|+++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~ 43 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME 43 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc
Confidence 44789999999999999999999999999999999875
No 195
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.10 E-value=2e-10 Score=73.89 Aligned_cols=42 Identities=24% Similarity=0.438 Sum_probs=38.4
Q ss_pred CCCCceeEEeCCCCCCCHHHHHHHHhcCcceeEEEEeccCCC
Q 032483 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKVRQH 139 (139)
Q Consensus 98 ~~~~~~lfV~nL~~~~t~~~L~~~F~~fG~v~~~~i~~d~~~ 139 (139)
....++|||+|||+++++++|+++|+.||.|++|+|++|+.|
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~ 80 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRET 80 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCC
Confidence 455789999999999999999999999999999999998753
No 196
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.10 E-value=9.1e-11 Score=71.94 Aligned_cols=48 Identities=17% Similarity=0.292 Sum_probs=41.0
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHHc--CcccCC---cEEEEeecCCCCC
Q 032483 1 MPKDQGSKAHRGIGFITFASADSVENLMVD--THELGG---STVVVDRATPKED 49 (139)
Q Consensus 1 i~~d~~tg~srG~gFV~F~~~~~a~~Ai~~--~~~i~g---r~i~v~~~~~~~~ 49 (139)
|++|+ +|++||||||+|.+.++|++||+. +..+.| ++|.|+++.++..
T Consensus 47 i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~~a~~~~~ 99 (105)
T 2dnh_A 47 VLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKE 99 (105)
T ss_dssp EEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEEESCSSCC
T ss_pred EEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEEECccCcc
Confidence 35666 799999999999999999999984 677887 9999999987644
No 197
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.10 E-value=4e-10 Score=70.08 Aligned_cols=39 Identities=13% Similarity=0.415 Sum_probs=36.6
Q ss_pred CCCceeEEeCCCCCCCHHHHHHHHhcCcceeEEEEeccC
Q 032483 99 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKVR 137 (139)
Q Consensus 99 ~~~~~lfV~nL~~~~t~~~L~~~F~~fG~v~~~~i~~d~ 137 (139)
...++|||+|||+.+++++|+++|++||.|.+|.|++|+
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~ 61 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS 61 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC
Confidence 456899999999999999999999999999999999986
No 198
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.10 E-value=4.5e-11 Score=77.30 Aligned_cols=40 Identities=23% Similarity=0.355 Sum_probs=35.1
Q ss_pred CCCCceeEEeCCCCCCCHHHHHHHHhcCcceeEEEEeccCC
Q 032483 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKVRQ 138 (139)
Q Consensus 98 ~~~~~~lfV~nL~~~~t~~~L~~~F~~fG~v~~~~i~~d~~ 138 (139)
....++|||+|||+++|+++|+++|++|| |++|.|++|++
T Consensus 43 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~ 82 (139)
T 2hgn_A 43 STTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD 82 (139)
T ss_dssp --CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC
Confidence 34468999999999999999999999999 77999999864
No 199
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.10 E-value=2.2e-11 Score=76.54 Aligned_cols=46 Identities=17% Similarity=0.263 Sum_probs=40.1
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHH-cCcccCCcEEEEeecCCC
Q 032483 1 MPKDQGSKAHRGIGFITFASADSVENLMV-DTHELGGSTVVVDRATPK 47 (139)
Q Consensus 1 i~~d~~tg~srG~gFV~F~~~~~a~~Ai~-~~~~i~gr~i~v~~~~~~ 47 (139)
|++|+. |++||||||+|.+.++|++||+ +++.|+||.|.|.++.++
T Consensus 52 i~~~~~-g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~~a~~~ 98 (118)
T 2db1_A 52 FIYTRE-GRQSGEAFVELESEDDVKLALKKDRESMGHRYIEVFKSHRT 98 (118)
T ss_dssp EEECSS-SCEEEEEEEEBSSHHHHHHHGGGTTEEETTEEEEEEEECHH
T ss_pred EEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECCHH
Confidence 356766 9999999999999999999999 468899999999988654
No 200
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.10 E-value=8.9e-11 Score=71.66 Aligned_cols=39 Identities=23% Similarity=0.560 Sum_probs=36.5
Q ss_pred CCCceeEEeCCCCCCCHHHHHHHHhcCcceeEEEEeccC
Q 032483 99 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKVR 137 (139)
Q Consensus 99 ~~~~~lfV~nL~~~~t~~~L~~~F~~fG~v~~~~i~~d~ 137 (139)
...++|||+|||+++++++|+++|++||.|.+|.|++|+
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~ 45 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR 45 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC
Confidence 446899999999999999999999999999999999986
No 201
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.10 E-value=9.2e-11 Score=73.19 Aligned_cols=39 Identities=31% Similarity=0.632 Sum_probs=35.4
Q ss_pred CCCceeEEeCCCCCCCHHHHHHHHhcCcceeEEEEeccCC
Q 032483 99 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKVRQ 138 (139)
Q Consensus 99 ~~~~~lfV~nL~~~~t~~~L~~~F~~fG~v~~~~i~~d~~ 138 (139)
...++|||+|||+++++++|+++|++||+|. +.++.|+.
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~ 44 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAE 44 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSS
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCC
Confidence 3468999999999999999999999999999 88888764
No 202
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.10 E-value=1.6e-10 Score=71.85 Aligned_cols=41 Identities=20% Similarity=0.322 Sum_probs=37.3
Q ss_pred CCCCceeEEeCCCCCCCHHHHHHHHhcCccee--------EEEEeccCC
Q 032483 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRIL--------DVYVPKVRQ 138 (139)
Q Consensus 98 ~~~~~~lfV~nL~~~~t~~~L~~~F~~fG~v~--------~~~i~~d~~ 138 (139)
....++|||+|||+.+++++|+++|++||.|. .|+|++|+.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~ 60 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKE 60 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTT
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCC
Confidence 45578999999999999999999999999999 699999864
No 203
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.10 E-value=2.7e-11 Score=78.38 Aligned_cols=47 Identities=11% Similarity=0.085 Sum_probs=41.2
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHH-cCcccCCcEEEEeecCCCC
Q 032483 1 MPKDQGSKAHRGIGFITFASADSVENLMV-DTHELGGSTVVVDRATPKE 48 (139)
Q Consensus 1 i~~d~~tg~srG~gFV~F~~~~~a~~Ai~-~~~~i~gr~i~v~~~~~~~ 48 (139)
|++|+. |++||||||+|.+.++|++||+ +...|+||.|.|..+.+++
T Consensus 77 i~~d~~-g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR~i~V~~a~~~~ 124 (139)
T 2hgn_A 77 IEIGPD-GRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLNSTTG 124 (139)
T ss_dssp CCCSSS-SCSSCCCEEECSHHHHHHHHTTCCSCSSSSCCCCCEECCCSC
T ss_pred EEECCC-CCCceEEEEEeCCHHHHHHHHhhCCCEECCEEEEEEECCCCC
Confidence 578876 9999999999999999999996 3688999999999887653
No 204
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.10 E-value=4.5e-11 Score=73.17 Aligned_cols=40 Identities=35% Similarity=0.581 Sum_probs=36.9
Q ss_pred CCCceeEEeCCCCCCCHHHHHHHHhcCcceeEEEEeccCC
Q 032483 99 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKVRQ 138 (139)
Q Consensus 99 ~~~~~lfV~nL~~~~t~~~L~~~F~~fG~v~~~~i~~d~~ 138 (139)
...++|||+|||+.+++++|+++|++||.|..|.|++|+.
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~ 45 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRE 45 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETT
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCC
Confidence 4468999999999999999999999999999999998864
No 205
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.10 E-value=2.7e-11 Score=84.52 Aligned_cols=46 Identities=22% Similarity=0.312 Sum_probs=42.2
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHHc--CcccCCcEEEEeecCC
Q 032483 1 MPKDQGSKAHRGIGFITFASADSVENLMVD--THELGGSTVVVDRATP 46 (139)
Q Consensus 1 i~~d~~tg~srG~gFV~F~~~~~a~~Ai~~--~~~i~gr~i~v~~~~~ 46 (139)
|++|+.||++||||||+|.+.++|++||+. .+.|+|+.|.|+++.+
T Consensus 102 i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~a~~ 149 (229)
T 3q2s_C 102 FFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPVNK 149 (229)
T ss_dssp EEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEECCH
T ss_pred EEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEECCC
Confidence 568999999999999999999999999995 5889999999999864
No 206
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.10 E-value=1.1e-10 Score=76.83 Aligned_cols=40 Identities=15% Similarity=0.309 Sum_probs=36.2
Q ss_pred CCceeEEeCCCCCCCHHHHHHHHhcCc--ceeEEEEeccCCC
Q 032483 100 IGKKIFVGRLPQEATAEDLRRYFSRFG--RILDVYVPKVRQH 139 (139)
Q Consensus 100 ~~~~lfV~nL~~~~t~~~L~~~F~~fG--~v~~~~i~~d~~~ 139 (139)
..++|||+|||+++|+++|+++|++|| .|.+|+|++|+.|
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~t 95 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRAN 95 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCC
Confidence 458999999999999999999999999 9999999999754
No 207
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.10 E-value=1.2e-10 Score=69.60 Aligned_cols=39 Identities=36% Similarity=0.539 Sum_probs=35.7
Q ss_pred CCCCceeEEeCCCCCCCHHHHHHHHhcCcceeEEEEecc
Q 032483 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKV 136 (139)
Q Consensus 98 ~~~~~~lfV~nL~~~~t~~~L~~~F~~fG~v~~~~i~~d 136 (139)
....++|||+|||+++++++|+++|++||.|..|.|+++
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~ 44 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKD 44 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEECC
Confidence 345789999999999999999999999999999999865
No 208
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.09 E-value=2.7e-10 Score=70.78 Aligned_cols=45 Identities=20% Similarity=0.235 Sum_probs=39.6
Q ss_pred CCCCCCCCccceEEEEECCHHHHHHHHH--cCcccCCcEEEEeecCCC
Q 032483 2 PKDQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPK 47 (139)
Q Consensus 2 ~~d~~tg~srG~gFV~F~~~~~a~~Ai~--~~~~i~gr~i~v~~~~~~ 47 (139)
++|+ +|+++|||||+|.+.++|++||+ +++.|+|+.|.|+++...
T Consensus 48 ~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 94 (114)
T 2do0_A 48 LEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDERA 94 (114)
T ss_dssp EECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCC
T ss_pred EECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEcccC
Confidence 4565 69999999999999999999999 468899999999998643
No 209
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=98.68 E-value=9.2e-12 Score=77.91 Aligned_cols=49 Identities=20% Similarity=0.291 Sum_probs=43.8
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHHc--CcccCCcEEEEeecCCCCC
Q 032483 1 MPKDQGSKAHRGIGFITFASADSVENLMVD--THELGGSTVVVDRATPKED 49 (139)
Q Consensus 1 i~~d~~tg~srG~gFV~F~~~~~a~~Ai~~--~~~i~gr~i~v~~~~~~~~ 49 (139)
|++|+.+|++||||||+|.+.++|++||+. +..++|++|.|+++.++..
T Consensus 47 i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 47 LYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFATRRAD 97 (116)
Confidence 467889999999999999999999999994 6889999999999887644
No 210
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.09 E-value=1.3e-10 Score=71.98 Aligned_cols=40 Identities=33% Similarity=0.535 Sum_probs=37.1
Q ss_pred CCCCceeEEeCCCCCCCHHHHHHHHhcCcceeEEEEeccC
Q 032483 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKVR 137 (139)
Q Consensus 98 ~~~~~~lfV~nL~~~~t~~~L~~~F~~fG~v~~~~i~~d~ 137 (139)
....++|||+|||+++++++|+++|++||.|.+|.|++|+
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~ 65 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE 65 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC
Confidence 4557899999999999999999999999999999999885
No 211
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.09 E-value=8.9e-11 Score=72.43 Aligned_cols=46 Identities=20% Similarity=0.182 Sum_probs=39.7
Q ss_pred CCCCCCC-CCccceEEEEECCHHHHHHHHHc--CcccCCcEEEEeecCC
Q 032483 1 MPKDQGS-KAHRGIGFITFASADSVENLMVD--THELGGSTVVVDRATP 46 (139)
Q Consensus 1 i~~d~~t-g~srG~gFV~F~~~~~a~~Ai~~--~~~i~gr~i~v~~~~~ 46 (139)
|++|+.+ +++||||||+|.+.++|++|++. +..++||.|.|.++.+
T Consensus 45 i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i~v~~a~~ 93 (105)
T 2pe8_A 45 IFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVVKACFYNL 93 (105)
T ss_dssp EEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCH
T ss_pred EecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcEEEEEEcCH
Confidence 3566654 79999999999999999999994 7899999999998854
No 212
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.09 E-value=1.1e-10 Score=76.64 Aligned_cols=49 Identities=22% Similarity=0.248 Sum_probs=43.7
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHHc--CcccCCcEEEEeecCCCCC
Q 032483 1 MPKDQGSKAHRGIGFITFASADSVENLMVD--THELGGSTVVVDRATPKED 49 (139)
Q Consensus 1 i~~d~~tg~srG~gFV~F~~~~~a~~Ai~~--~~~i~gr~i~v~~~~~~~~ 49 (139)
|++|+.|++++|||||+|.+.++|++||+. .+.|+|++|.|.++.++..
T Consensus 71 i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 121 (156)
T 1h2v_Z 71 MGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDAGFKE 121 (156)
T ss_dssp EEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEESCCCT
T ss_pred EEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCC
Confidence 467889999999999999999999999994 6889999999999987543
No 213
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.08 E-value=7.1e-11 Score=73.88 Aligned_cols=38 Identities=21% Similarity=0.301 Sum_probs=33.7
Q ss_pred CCCceeEEeCCCCCCCHHHHHHHHhcCcceeEEEEecc
Q 032483 99 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKV 136 (139)
Q Consensus 99 ~~~~~lfV~nL~~~~t~~~L~~~F~~fG~v~~~~i~~d 136 (139)
...++|||+|||+++++++|+++|++||+|..|.|+.|
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~ 51 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD 51 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC
Confidence 45689999999999999999999999999999999875
No 214
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.08 E-value=1.4e-11 Score=78.21 Aligned_cols=46 Identities=20% Similarity=0.240 Sum_probs=40.0
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHHc-CcccCCcEEEEeecCCC
Q 032483 1 MPKDQGSKAHRGIGFITFASADSVENLMVD-THELGGSTVVVDRATPK 47 (139)
Q Consensus 1 i~~d~~tg~srG~gFV~F~~~~~a~~Ai~~-~~~i~gr~i~v~~~~~~ 47 (139)
|++| .+|++||||||+|.+.++|++||+. ++.|+||.|.|..+.++
T Consensus 59 i~~d-~~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR~i~V~~a~~~ 105 (123)
T 2dha_A 59 FVTY-PDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAA 105 (123)
T ss_dssp EEEC-TTSCEEEEEEECCSSHHHHHHHHTTTTEESSSCEECCEEECHH
T ss_pred EEEC-CCCCEeeEEEEEECCHHHHHHHHHhCCCeeCCeEEEEEECCHH
Confidence 3466 5899999999999999999999994 68899999999987654
No 215
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.08 E-value=2.1e-11 Score=77.20 Aligned_cols=46 Identities=17% Similarity=0.252 Sum_probs=41.0
Q ss_pred CCCCCCCCccceEEEEECCHHHHHHHHH-cCcccCCcEEEEeecCCC
Q 032483 2 PKDQGSKAHRGIGFITFASADSVENLMV-DTHELGGSTVVVDRATPK 47 (139)
Q Consensus 2 ~~d~~tg~srG~gFV~F~~~~~a~~Ai~-~~~~i~gr~i~v~~~~~~ 47 (139)
+.|..+|+++|||||+|.+.++|++||. +++.|+||.|.|.++.++
T Consensus 58 ~~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~~a~~~ 104 (124)
T 1wel_A 58 IAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPITKK 104 (124)
T ss_dssp EEECTTSSEEEEEEEEBSSSHHHHHHHTSCSBCSTTSCBEEEEECHH
T ss_pred EEECCCCCCCeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEECCHH
Confidence 4567899999999999999999999999 468899999999998754
No 216
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.08 E-value=2.2e-10 Score=75.18 Aligned_cols=42 Identities=21% Similarity=0.323 Sum_probs=38.3
Q ss_pred CCCCceeEEeCCCCCCCHHHHHHHHhcCcceeEEEEeccCCC
Q 032483 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKVRQH 139 (139)
Q Consensus 98 ~~~~~~lfV~nL~~~~t~~~L~~~F~~fG~v~~~~i~~d~~~ 139 (139)
....++|||+|||+.+|+++|+++|++||.|..|.|++|+.|
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~ 77 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMK 77 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC
Confidence 345789999999999999999999999999999999998753
No 217
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.07 E-value=1.9e-11 Score=74.67 Aligned_cols=48 Identities=19% Similarity=0.421 Sum_probs=42.2
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHHcCcccCCcEEEEeecCCCCC
Q 032483 1 MPKDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKED 49 (139)
Q Consensus 1 i~~d~~tg~srG~gFV~F~~~~~a~~Ai~~~~~i~gr~i~v~~~~~~~~ 49 (139)
|++|+ +|++||||||+|.+.++|++||.+++.++|+.|.|.++.++..
T Consensus 41 i~~~~-~g~~~g~afV~f~~~~~a~~Ai~~~~~~~g~~l~v~~a~~~~~ 88 (102)
T 2xs2_A 41 IITDR-TGVSKGYGFVSFYNDVDVQKIVESQINFHGKKLKLGPAIRKQN 88 (102)
T ss_dssp EEECT-TSCEEEEEEEEESSCCCHHHHTTCCCEETTEECEEEEEEECC-
T ss_pred EEECC-CCCccceEEEEECCHHHHHHHHhCCCeECCEEEEEEECCcCcc
Confidence 45677 9999999999999999999999977889999999999876643
No 218
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.07 E-value=1.1e-10 Score=71.93 Aligned_cols=43 Identities=12% Similarity=0.278 Sum_probs=37.3
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHHc--CcccCCcEEEEeec
Q 032483 1 MPKDQGSKAHRGIGFITFASADSVENLMVD--THELGGSTVVVDRA 44 (139)
Q Consensus 1 i~~d~~tg~srG~gFV~F~~~~~a~~Ai~~--~~~i~gr~i~v~~~ 44 (139)
|++|. ++++||||||+|.+.++|++|+.. +..++||+|.|.++
T Consensus 59 i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~v~~s 103 (104)
T 1jmt_A 59 VCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELS 103 (104)
T ss_dssp ECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECCEEEC
T ss_pred EEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEEEEEc
Confidence 35664 479999999999999999999994 78899999999875
No 219
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.07 E-value=2.8e-10 Score=68.84 Aligned_cols=45 Identities=9% Similarity=0.132 Sum_probs=38.8
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHHc--CcccCCcEEEEeecCCCC
Q 032483 1 MPKDQGSKAHRGIGFITFASADSVENLMVD--THELGGSTVVVDRATPKE 48 (139)
Q Consensus 1 i~~d~~tg~srG~gFV~F~~~~~a~~Ai~~--~~~i~gr~i~v~~~~~~~ 48 (139)
|++|+.+ ||||||+|.+.++|++||+. +..++||+|.|+++.++.
T Consensus 45 i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~a~~~~ 91 (96)
T 2dgx_A 45 LSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSLATGAS 91 (96)
T ss_dssp ECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCSS
T ss_pred EEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCCC
Confidence 4567666 89999999999999999994 688999999999987653
No 220
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.07 E-value=1.7e-10 Score=68.55 Aligned_cols=37 Identities=11% Similarity=0.342 Sum_probs=34.1
Q ss_pred CccceEEEEECCHHHHHHHHHc--CcccCCcEEEEeecC
Q 032483 9 AHRGIGFITFASADSVENLMVD--THELGGSTVVVDRAT 45 (139)
Q Consensus 9 ~srG~gFV~F~~~~~a~~Ai~~--~~~i~gr~i~v~~~~ 45 (139)
.|||||||+|.+.++|++|++. +.++.||+|.|++|.
T Consensus 41 ~~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 41 LNQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp TTTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred CCCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 4899999999999999999994 689999999999883
No 221
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.07 E-value=1.1e-10 Score=69.24 Aligned_cols=47 Identities=17% Similarity=0.415 Sum_probs=40.8
Q ss_pred CCCCCCCCC-ccceEEEEECCHHHHHHHHH--cCcccCCcEEEEeecCCC
Q 032483 1 MPKDQGSKA-HRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPK 47 (139)
Q Consensus 1 i~~d~~tg~-srG~gFV~F~~~~~a~~Ai~--~~~~i~gr~i~v~~~~~~ 47 (139)
|++|+.++. ++|||||+|.+.++|++|++ ++..++|+.|.|.++.+.
T Consensus 36 i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 85 (88)
T 4a8x_A 36 MPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVLAP 85 (88)
T ss_dssp CCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEECCC
T ss_pred EEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEECCCC
Confidence 456666666 99999999999999999999 478999999999998754
No 222
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.07 E-value=9.1e-11 Score=71.07 Aligned_cols=40 Identities=15% Similarity=0.180 Sum_probs=36.1
Q ss_pred CCCceeEEeCCCCCCCHHHHHHHHhcCcceeEEEEeccCC
Q 032483 99 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKVRQ 138 (139)
Q Consensus 99 ~~~~~lfV~nL~~~~t~~~L~~~F~~fG~v~~~~i~~d~~ 138 (139)
...++|||+|||+++++++|+++|++||.|..+.++.++.
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~ 52 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNE 52 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECC
Confidence 4468999999999999999999999999999888887754
No 223
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.06 E-value=3.6e-10 Score=68.01 Aligned_cols=38 Identities=24% Similarity=0.451 Sum_probs=33.1
Q ss_pred CCCceeEEeCCCCCCCHHHHHHHHhcCcceeEEEEeccCC
Q 032483 99 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKVRQ 138 (139)
Q Consensus 99 ~~~~~lfV~nL~~~~t~~~L~~~F~~fG~v~~~~i~~d~~ 138 (139)
...++|||+|||+++++++|+++|++||.|.+| +.|+.
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~ 43 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKD 43 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCC
Confidence 345799999999999999999999999999987 55543
No 224
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.06 E-value=2.2e-10 Score=71.45 Aligned_cols=45 Identities=22% Similarity=0.319 Sum_probs=38.8
Q ss_pred CCCCCCC---CCccceEEEEECCHHHHHHHHHcCcccCCcEEEEeecC
Q 032483 1 MPKDQGS---KAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRAT 45 (139)
Q Consensus 1 i~~d~~t---g~srG~gFV~F~~~~~a~~Ai~~~~~i~gr~i~v~~~~ 45 (139)
+++|+.+ |++||||||+|.+.++|++||+.++.++|+.+.+..+.
T Consensus 39 ~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~~~G~~~~~~~~~ 86 (114)
T 2dnl_A 39 WPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLEEDGKLYLCVSSP 86 (114)
T ss_dssp CTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEEETTEEEEEECCS
T ss_pred EeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhhcCCcEEEeccCC
Confidence 4566677 89999999999999999999998888999998887554
No 225
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.06 E-value=1.6e-10 Score=72.98 Aligned_cols=39 Identities=26% Similarity=0.349 Sum_probs=36.3
Q ss_pred CCceeEEeCCCCCCCHHHHHHHHhcCcceeEEEEeccCC
Q 032483 100 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKVRQ 138 (139)
Q Consensus 100 ~~~~lfV~nL~~~~t~~~L~~~F~~fG~v~~~~i~~d~~ 138 (139)
..++|||+|||+++++++|+++|++||.|.+|.|++|+.
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~ 73 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKF 73 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCC
Confidence 357999999999999999999999999999999998864
No 226
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.06 E-value=2.2e-10 Score=70.42 Aligned_cols=44 Identities=18% Similarity=0.215 Sum_probs=39.3
Q ss_pred CCCCCccceEEEEECCHHHHHHHHHc--CcccCCc-EEEEeecCCCC
Q 032483 5 QGSKAHRGIGFITFASADSVENLMVD--THELGGS-TVVVDRATPKE 48 (139)
Q Consensus 5 ~~tg~srG~gFV~F~~~~~a~~Ai~~--~~~i~gr-~i~v~~~~~~~ 48 (139)
+.+|++||||||+|.+.++|++||.. +..++|+ +|.|.++...+
T Consensus 55 ~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l~V~~a~~~~ 101 (105)
T 2nlw_A 55 EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRVNLFTDFD 101 (105)
T ss_dssp CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEEEEECSCCCC
T ss_pred CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceEEEEEcchHh
Confidence 47899999999999999999999994 6889998 99999987543
No 227
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.06 E-value=3.6e-10 Score=67.44 Aligned_cols=37 Identities=35% Similarity=0.723 Sum_probs=34.3
Q ss_pred CCCceeEEeCCCCCCCHHHHHHHHhcCcceeEEEEec
Q 032483 99 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK 135 (139)
Q Consensus 99 ~~~~~lfV~nL~~~~t~~~L~~~F~~fG~v~~~~i~~ 135 (139)
...++|||+|||+++++++|+++|++||.|..|.|++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~ 42 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIK 42 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEET
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEC
Confidence 4578999999999999999999999999999999874
No 228
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.06 E-value=3.6e-11 Score=71.04 Aligned_cols=44 Identities=14% Similarity=0.277 Sum_probs=38.2
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHHc--CcccCCcEEEEeec
Q 032483 1 MPKDQGSKAHRGIGFITFASADSVENLMVD--THELGGSTVVVDRA 44 (139)
Q Consensus 1 i~~d~~tg~srG~gFV~F~~~~~a~~Ai~~--~~~i~gr~i~v~~~ 44 (139)
|++|+.+|+++|||||+|.+.++|++|++. +..++|+.|++.++
T Consensus 37 i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 37 AILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp EECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred EEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 467889999999999999999999999994 57889988877654
No 229
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.05 E-value=1.8e-10 Score=71.77 Aligned_cols=46 Identities=22% Similarity=0.253 Sum_probs=40.5
Q ss_pred CCCCCCccceEEEEECCHHHHHHHHHc--CcccCCcEEEEeecCCCCC
Q 032483 4 DQGSKAHRGIGFITFASADSVENLMVD--THELGGSTVVVDRATPKED 49 (139)
Q Consensus 4 d~~tg~srG~gFV~F~~~~~a~~Ai~~--~~~i~gr~i~v~~~~~~~~ 49 (139)
+..+|++||||||+|.+.++|++||.. +..|+|++|.|.++.++..
T Consensus 60 ~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~~~ 107 (115)
T 2cpx_A 60 RMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFGKNKKQ 107 (115)
T ss_dssp EEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEECCCCSC
T ss_pred EcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEccCCCC
Confidence 345899999999999999999999984 6889999999999987644
No 230
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.05 E-value=1.2e-10 Score=71.58 Aligned_cols=44 Identities=18% Similarity=0.203 Sum_probs=39.4
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHH--cCcccCCcEEEEeecC
Q 032483 1 MPKDQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRAT 45 (139)
Q Consensus 1 i~~d~~tg~srG~gFV~F~~~~~a~~Ai~--~~~~i~gr~i~v~~~~ 45 (139)
|++|+ +|+++|||||+|.+.++|++||+ ++..|+|+.|.|+++.
T Consensus 61 i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 106 (107)
T 3ulh_A 61 VHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVT 106 (107)
T ss_dssp EEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred EEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEeC
Confidence 35676 99999999999999999999999 4688999999999874
No 231
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.05 E-value=3.1e-10 Score=75.17 Aligned_cols=41 Identities=22% Similarity=0.422 Sum_probs=37.1
Q ss_pred CCCCceeEEeCCCCCCCHHHHHHHHhcCcceeEEEEeccCC
Q 032483 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKVRQ 138 (139)
Q Consensus 98 ~~~~~~lfV~nL~~~~t~~~L~~~F~~fG~v~~~~i~~d~~ 138 (139)
....++|||+|||+.+++++|+++|++||.|..|.|+.|+.
T Consensus 69 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~ 109 (165)
T 1rk8_A 69 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRR 109 (165)
T ss_dssp CC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCC
Confidence 34578999999999999999999999999999999999864
No 232
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.05 E-value=2.5e-10 Score=71.48 Aligned_cols=39 Identities=31% Similarity=0.487 Sum_probs=36.4
Q ss_pred CCCceeEEeCCCCCCCHHHHHHHHhcCcceeEEEEeccC
Q 032483 99 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKVR 137 (139)
Q Consensus 99 ~~~~~lfV~nL~~~~t~~~L~~~F~~fG~v~~~~i~~d~ 137 (139)
...++|||+|||+++++++|+++|++||.|.+|.|+.|+
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~ 43 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR 43 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC
Confidence 346899999999999999999999999999999999986
No 233
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.05 E-value=2.2e-10 Score=79.89 Aligned_cols=40 Identities=25% Similarity=0.361 Sum_probs=36.2
Q ss_pred CCceeEEeCCCCCCCHHHHHHHHhcCc--ceeEEEEeccCCC
Q 032483 100 IGKKIFVGRLPQEATAEDLRRYFSRFG--RILDVYVPKVRQH 139 (139)
Q Consensus 100 ~~~~lfV~nL~~~~t~~~L~~~F~~fG--~v~~~~i~~d~~~ 139 (139)
..++|||+|||+.+|+++|+++|++|| .|++|+|++|+.|
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~t 108 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRAN 108 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTT
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCC
Confidence 467999999999999999999999999 9999999999754
No 234
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.05 E-value=1.7e-10 Score=74.29 Aligned_cols=41 Identities=20% Similarity=0.208 Sum_probs=37.4
Q ss_pred CCCCceeEEeCCCCCCCHHHHHHHHhcCcc---eeEEEEeccCC
Q 032483 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGR---ILDVYVPKVRQ 138 (139)
Q Consensus 98 ~~~~~~lfV~nL~~~~t~~~L~~~F~~fG~---v~~~~i~~d~~ 138 (139)
....++|||+|||+++|+++|+++|++||. |.+|.|++|++
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~ 84 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE 84 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC
Confidence 455789999999999999999999999999 89999999864
No 235
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.05 E-value=1.8e-10 Score=71.47 Aligned_cols=39 Identities=23% Similarity=0.263 Sum_probs=35.6
Q ss_pred CCCceeEEeCCCCCCCHHHHHHHHhcCcceeEEEEeccCC
Q 032483 99 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKVRQ 138 (139)
Q Consensus 99 ~~~~~lfV~nL~~~~t~~~L~~~F~~fG~v~~~~i~~d~~ 138 (139)
...++|||+|||+++|+++|+++|++| .|.+|.|++|++
T Consensus 14 ~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~ 52 (109)
T 2dnn_A 14 PDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV 52 (109)
T ss_dssp HHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC
Confidence 345799999999999999999999999 899999999864
No 236
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.05 E-value=5.9e-11 Score=71.48 Aligned_cols=39 Identities=15% Similarity=0.196 Sum_probs=35.4
Q ss_pred CCceeEEeCCCCCCCHHHHHHHHhcCcceeEEEEeccCC
Q 032483 100 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKVRQ 138 (139)
Q Consensus 100 ~~~~lfV~nL~~~~t~~~L~~~F~~fG~v~~~~i~~d~~ 138 (139)
..++|||+|||+++++++|+++|++||.|..+.++.|+.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~ 52 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNE 52 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCC
Confidence 358999999999999999999999999999998888764
No 237
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.05 E-value=2.6e-10 Score=72.63 Aligned_cols=43 Identities=19% Similarity=0.340 Sum_probs=38.8
Q ss_pred CCCCccceEEEEECCHHHHHHHHHc--CcccCCcEEEEeecCCCC
Q 032483 6 GSKAHRGIGFITFASADSVENLMVD--THELGGSTVVVDRATPKE 48 (139)
Q Consensus 6 ~tg~srG~gFV~F~~~~~a~~Ai~~--~~~i~gr~i~v~~~~~~~ 48 (139)
.++++||||||+|.+.++|++||.. +..|.|++|.|.++.++.
T Consensus 67 ~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~~a~~~~ 111 (127)
T 2a3j_A 67 LSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVITFSETPQ 111 (127)
T ss_dssp CCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEEECCCCC
T ss_pred cCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEEEccCcc
Confidence 4789999999999999999999984 688999999999987653
No 238
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.05 E-value=4.7e-10 Score=70.84 Aligned_cols=40 Identities=25% Similarity=0.423 Sum_probs=37.4
Q ss_pred CCCCceeEEeCCCCCCCHHHHHHHHhcCcceeEEEEeccC
Q 032483 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKVR 137 (139)
Q Consensus 98 ~~~~~~lfV~nL~~~~t~~~L~~~F~~fG~v~~~~i~~d~ 137 (139)
....++|||+|||+.+++++|+++|++||.|.+|.|++|+
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~ 71 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR 71 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC
Confidence 4567899999999999999999999999999999999886
No 239
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.05 E-value=1.6e-10 Score=71.81 Aligned_cols=38 Identities=29% Similarity=0.472 Sum_probs=35.1
Q ss_pred CCceeEEeCCCCCCCHHHHHHHHhcCcceeEEEEeccC
Q 032483 100 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKVR 137 (139)
Q Consensus 100 ~~~~lfV~nL~~~~t~~~L~~~F~~fG~v~~~~i~~d~ 137 (139)
..++|||+|||+++++++|+++|++||.|.+|.|++++
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~ 46 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEGG 46 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCSSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCC
Confidence 46799999999999999999999999999999998654
No 240
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.05 E-value=3.4e-10 Score=71.95 Aligned_cols=40 Identities=20% Similarity=0.335 Sum_probs=35.4
Q ss_pred CCCCceeEEeCCCCCCCHHHHHHHHhcCccee--EEEEeccCC
Q 032483 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRIL--DVYVPKVRQ 138 (139)
Q Consensus 98 ~~~~~~lfV~nL~~~~t~~~L~~~F~~fG~v~--~~~i~~d~~ 138 (139)
....++|||+|||+++|+++|+++|++| .|+ +|.|++|++
T Consensus 39 ~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~ 80 (126)
T 2hgm_A 39 SANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE 80 (126)
T ss_dssp SSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC
Confidence 3456899999999999999999999999 676 999998864
No 241
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.05 E-value=4.6e-11 Score=71.30 Aligned_cols=37 Identities=35% Similarity=0.678 Sum_probs=35.3
Q ss_pred ceeEEeCCCCCCCHHHHHHHHhcCcceeEEEEeccCC
Q 032483 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKVRQ 138 (139)
Q Consensus 102 ~~lfV~nL~~~~t~~~L~~~F~~fG~v~~~~i~~d~~ 138 (139)
++|||+|||+++++++|+++|++||.|.+|.|++|+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~ 38 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRE 38 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSS
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCC
Confidence 5899999999999999999999999999999999875
No 242
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.04 E-value=2.8e-10 Score=76.63 Aligned_cols=42 Identities=31% Similarity=0.485 Sum_probs=38.3
Q ss_pred CCCCceeEEeCCCCCCCHHHHHHHHhcCcceeEEEEeccCCC
Q 032483 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKVRQH 139 (139)
Q Consensus 98 ~~~~~~lfV~nL~~~~t~~~L~~~F~~fG~v~~~~i~~d~~~ 139 (139)
....++|||+|||+++|+++|+++|++||.|.+|.|++|+.|
T Consensus 10 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~ 51 (196)
T 1l3k_A 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNT 51 (196)
T ss_dssp CGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCC
Confidence 345789999999999999999999999999999999998753
No 243
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.04 E-value=2.1e-10 Score=71.22 Aligned_cols=41 Identities=24% Similarity=0.418 Sum_probs=37.5
Q ss_pred CCCCceeEEeCCCCCCCHHHHH---HHHhcCcceeEEEEeccCC
Q 032483 98 QRIGKKIFVGRLPQEATAEDLR---RYFSRFGRILDVYVPKVRQ 138 (139)
Q Consensus 98 ~~~~~~lfV~nL~~~~t~~~L~---~~F~~fG~v~~~~i~~d~~ 138 (139)
....++|||+|||+++++++|+ ++|++||+|..|.|++|+.
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~ 55 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTS 55 (111)
T ss_dssp CCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSS
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCC
Confidence 3456899999999999999999 9999999999999998864
No 244
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.03 E-value=1.5e-10 Score=69.60 Aligned_cols=43 Identities=23% Similarity=0.387 Sum_probs=38.1
Q ss_pred CCCCCCCCccceEEEEECCHHHHHHHHH--cCcccCCcEEEEeecC
Q 032483 2 PKDQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRAT 45 (139)
Q Consensus 2 ~~d~~tg~srG~gFV~F~~~~~a~~Ai~--~~~~i~gr~i~v~~~~ 45 (139)
++|+. |++||||||+|.+.++|++||+ +++.++|++|.|+++.
T Consensus 49 ~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 93 (95)
T 2ywk_A 49 CKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGPS 93 (95)
T ss_dssp EECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred EECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEcC
Confidence 45665 9999999999999999999999 4688999999999864
No 245
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.03 E-value=7.3e-10 Score=67.65 Aligned_cols=46 Identities=15% Similarity=0.238 Sum_probs=38.7
Q ss_pred CCCCCCCCccceEEEEECCHHHHHHHHH--cCcccCCcEEEEeecCCCCC
Q 032483 2 PKDQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKED 49 (139)
Q Consensus 2 ~~d~~tg~srG~gFV~F~~~~~a~~Ai~--~~~~i~gr~i~v~~~~~~~~ 49 (139)
++|+. .+||||||+|.+.++|++||. ++..|+|++|.|+++.++..
T Consensus 48 ~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 95 (103)
T 2cqi_A 48 ITEHT--SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSS 95 (103)
T ss_dssp ECCCC--SSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCTTC
T ss_pred EecCC--CCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECCCCcc
Confidence 45543 479999999999999999999 46889999999999987543
No 246
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.03 E-value=7.2e-11 Score=74.91 Aligned_cols=44 Identities=16% Similarity=0.018 Sum_probs=36.1
Q ss_pred CCCCCCCCCccceEEEEECC----HHH----HHHHHH----cCcccCCcEEEEeec
Q 032483 1 MPKDQGSKAHRGIGFITFAS----ADS----VENLMV----DTHELGGSTVVVDRA 44 (139)
Q Consensus 1 i~~d~~tg~srG~gFV~F~~----~~~----a~~Ai~----~~~~i~gr~i~v~~~ 44 (139)
++.|+.||+|||||||+|.+ +++ |.+|+. ++..|+||+|.|+..
T Consensus 38 li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~I~Gr~irV~ln 93 (136)
T 2j8a_A 38 AFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCFIMGFKFEVILN 93 (136)
T ss_dssp EEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEEETTEEEEEEEC
T ss_pred EEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCeecCcEEEEEEC
Confidence 46799999999999999996 333 788888 468999999999864
No 247
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.02 E-value=3e-10 Score=70.04 Aligned_cols=40 Identities=20% Similarity=0.395 Sum_probs=36.0
Q ss_pred CCCceeEEeCCCCCCCHHHHHHHHhcCcc-eeEEEEe-ccCC
Q 032483 99 RIGKKIFVGRLPQEATAEDLRRYFSRFGR-ILDVYVP-KVRQ 138 (139)
Q Consensus 99 ~~~~~lfV~nL~~~~t~~~L~~~F~~fG~-v~~~~i~-~d~~ 138 (139)
...++|||+|||+.+++++|+++|++||. |.+|.|+ .|+.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~ 47 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAAD 47 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCT
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCC
Confidence 34689999999999999999999999999 9999998 6654
No 248
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.02 E-value=4e-10 Score=69.61 Aligned_cols=40 Identities=23% Similarity=0.426 Sum_probs=36.5
Q ss_pred CCCCceeEEeCCCCCCCHHHHHHHHhcCcceeEEEEeccC
Q 032483 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKVR 137 (139)
Q Consensus 98 ~~~~~~lfV~nL~~~~t~~~L~~~F~~fG~v~~~~i~~d~ 137 (139)
....++|||+|||+.+++++|+++|++||.|.+|.|++++
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~ 61 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEK 61 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETTT
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCCC
Confidence 3457899999999999999999999999999999998864
No 249
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.01 E-value=2e-10 Score=70.88 Aligned_cols=41 Identities=22% Similarity=0.071 Sum_probs=37.1
Q ss_pred CCCCceeEEeCCCCCCCHHHHHHHHhcCcc---eeEEEEeccCC
Q 032483 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGR---ILDVYVPKVRQ 138 (139)
Q Consensus 98 ~~~~~~lfV~nL~~~~t~~~L~~~F~~fG~---v~~~~i~~d~~ 138 (139)
....++|||+|||+++|+++|+++|+.||. |..|.|++|+.
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~ 51 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD 51 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC
Confidence 345789999999999999999999999998 99999998864
No 250
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.01 E-value=1.3e-09 Score=66.14 Aligned_cols=39 Identities=18% Similarity=0.203 Sum_probs=35.4
Q ss_pred CCCCceeEEeCCCCCCCHHHHHHHHhcC--cceeEEEEecc
Q 032483 98 QRIGKKIFVGRLPQEATAEDLRRYFSRF--GRILDVYVPKV 136 (139)
Q Consensus 98 ~~~~~~lfV~nL~~~~t~~~L~~~F~~f--G~v~~~~i~~d 136 (139)
....++|||+|||+.+++++|+++|++| |.|..|.++++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~~g 52 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRD 52 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEECSS
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEeCC
Confidence 4567899999999999999999999999 99999988754
No 251
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.01 E-value=5.3e-10 Score=68.05 Aligned_cols=39 Identities=31% Similarity=0.425 Sum_probs=35.3
Q ss_pred CCCceeEEeCCCCCCCHHHHHHHHhcCcceeEEEEeccC
Q 032483 99 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKVR 137 (139)
Q Consensus 99 ~~~~~lfV~nL~~~~t~~~L~~~F~~fG~v~~~~i~~d~ 137 (139)
...++|||+|||+++++++|+++|++||.|.+|+|++.+
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~ 63 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYPEK 63 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEETTT
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEecCC
Confidence 346899999999999999999999999999999997543
No 252
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.00 E-value=2e-10 Score=76.08 Aligned_cols=49 Identities=16% Similarity=0.222 Sum_probs=43.0
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHHc--CcccCCcEEEEeecCCCCC
Q 032483 1 MPKDQGSKAHRGIGFITFASADSVENLMVD--THELGGSTVVVDRATPKED 49 (139)
Q Consensus 1 i~~d~~tg~srG~gFV~F~~~~~a~~Ai~~--~~~i~gr~i~v~~~~~~~~ 49 (139)
|++|+.||+++|||||+|.+.++|++||.. +..|+|++|.|.++.++..
T Consensus 104 i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 154 (165)
T 1rk8_A 104 LNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGP 154 (165)
T ss_dssp EEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC-
T ss_pred EEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCCC
Confidence 457888999999999999999999999984 6889999999999976643
No 253
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.00 E-value=1.8e-10 Score=70.22 Aligned_cols=39 Identities=26% Similarity=0.522 Sum_probs=34.1
Q ss_pred CCCCceeEEeCCCCCCCHHHHHHHHhcCcceeEEEEeccC
Q 032483 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKVR 137 (139)
Q Consensus 98 ~~~~~~lfV~nL~~~~t~~~L~~~F~~fG~v~~~~i~~d~ 137 (139)
....++|||+|||+++++++|+++|++|| |.+|.|++|+
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~ 54 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREP 54 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCT
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecC
Confidence 45578999999999999999999999999 9999999986
No 254
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.00 E-value=4.1e-10 Score=66.95 Aligned_cols=38 Identities=11% Similarity=0.106 Sum_probs=34.6
Q ss_pred CCceeEEeCCCCCCCHHHHHHHHhcCcceeEEEEeccC
Q 032483 100 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKVR 137 (139)
Q Consensus 100 ~~~~lfV~nL~~~~t~~~L~~~F~~fG~v~~~~i~~d~ 137 (139)
.+.-|||+||++++||++|+++|++||+|.+++++..+
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~~k 43 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYLNQ 43 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEETTT
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcCCC
Confidence 35789999999999999999999999999999997643
No 255
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.00 E-value=4.8e-10 Score=69.34 Aligned_cols=36 Identities=28% Similarity=0.620 Sum_probs=33.0
Q ss_pred CCCceeEEeCCCCC-CCHHHHHHHHhcCcceeEEEEe
Q 032483 99 RIGKKIFVGRLPQE-ATAEDLRRYFSRFGRILDVYVP 134 (139)
Q Consensus 99 ~~~~~lfV~nL~~~-~t~~~L~~~F~~fG~v~~~~i~ 134 (139)
...++|||+|||+. +++++|+++|++||.|..|.|.
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i~ 61 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSVH 61 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEEE
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEe
Confidence 34689999999999 9999999999999999999873
No 256
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.00 E-value=4.1e-10 Score=71.21 Aligned_cols=40 Identities=18% Similarity=0.303 Sum_probs=34.6
Q ss_pred CCCCceeEEeCCCCCCCHHHHHHHHhcCcceeEEEEeccC
Q 032483 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKVR 137 (139)
Q Consensus 98 ~~~~~~lfV~nL~~~~t~~~L~~~F~~fG~v~~~~i~~d~ 137 (139)
....++|||+|||+++|+++|+++|++||.|..+.++.+.
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~ 61 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYG 61 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEEC
Confidence 3456899999999999999999999999999986666554
No 257
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.00 E-value=2.9e-10 Score=70.70 Aligned_cols=46 Identities=20% Similarity=0.384 Sum_probs=39.1
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHHc--Cccc--------CCcEEEEeecCCC
Q 032483 1 MPKDQGSKAHRGIGFITFASADSVENLMVD--THEL--------GGSTVVVDRATPK 47 (139)
Q Consensus 1 i~~d~~tg~srG~gFV~F~~~~~a~~Ai~~--~~~i--------~gr~i~v~~~~~~ 47 (139)
|++|+ +|++||||||+|.+.++|++||+. +..| .+++|.|+++.|+
T Consensus 57 i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~~l~v~~a~p~ 112 (114)
T 1x5o_A 57 ILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFSGPS 112 (114)
T ss_dssp EEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSSCBEEEECCCS
T ss_pred EEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCCceeEEccCCC
Confidence 35677 999999999999999999999994 5666 5788999988764
No 258
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=98.99 E-value=6.4e-10 Score=68.52 Aligned_cols=45 Identities=18% Similarity=0.265 Sum_probs=39.1
Q ss_pred CCCCCCC--CCccceEEEEECCHHHHHHHHHc--CcccCCcEEEEeecC
Q 032483 1 MPKDQGS--KAHRGIGFITFASADSVENLMVD--THELGGSTVVVDRAT 45 (139)
Q Consensus 1 i~~d~~t--g~srG~gFV~F~~~~~a~~Ai~~--~~~i~gr~i~v~~~~ 45 (139)
|++|+.+ ++++|||||+|.+.++|++|+.. +..++||.|.|.++.
T Consensus 47 i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~f~GR~i~v~~~~ 95 (105)
T 3v4m_A 47 IPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYCD 95 (105)
T ss_dssp CCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred EeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEeC
Confidence 5677655 57899999999999999999994 789999999999864
No 259
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=98.99 E-value=5.4e-10 Score=67.34 Aligned_cols=44 Identities=23% Similarity=0.368 Sum_probs=39.1
Q ss_pred CCCCCccceEEEEECCHHHHHHHHHc--CcccCCcEEEEeecCCCC
Q 032483 5 QGSKAHRGIGFITFASADSVENLMVD--THELGGSTVVVDRATPKE 48 (139)
Q Consensus 5 ~~tg~srG~gFV~F~~~~~a~~Ai~~--~~~i~gr~i~v~~~~~~~ 48 (139)
..+|+++|||||+|.+.++|++||.. +..|+|+.|.|.++.++.
T Consensus 47 ~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 92 (96)
T 1fjc_A 47 SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKG 92 (96)
T ss_dssp EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSSSC
T ss_pred CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCCC
Confidence 35789999999999999999999994 578999999999987663
No 260
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=98.99 E-value=3.2e-10 Score=69.01 Aligned_cols=35 Identities=31% Similarity=0.589 Sum_probs=33.4
Q ss_pred ceeEEeCCCCCCCHHHHHHHHhcCcceeEEEEecc
Q 032483 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKV 136 (139)
Q Consensus 102 ~~lfV~nL~~~~t~~~L~~~F~~fG~v~~~~i~~d 136 (139)
++|||+|||+++|+++|+++|++||+|.+|.|++|
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~ 35 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN 35 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC
Confidence 48999999999999999999999999999999887
No 261
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.98 E-value=1.2e-09 Score=66.60 Aligned_cols=46 Identities=20% Similarity=0.357 Sum_probs=38.9
Q ss_pred CCCCCCCCccceEEEEECCHHHHHHHHHc--CcccCCcEEEEeecCCCCC
Q 032483 2 PKDQGSKAHRGIGFITFASADSVENLMVD--THELGGSTVVVDRATPKED 49 (139)
Q Consensus 2 ~~d~~tg~srG~gFV~F~~~~~a~~Ai~~--~~~i~gr~i~v~~~~~~~~ 49 (139)
++|+. .++|||||+|.+.++|++||.. ++.|+|+.|.|+++.++..
T Consensus 48 ~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 95 (103)
T 2cq3_A 48 IFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVM 95 (103)
T ss_dssp ECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCSSCC
T ss_pred EecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcccCCC
Confidence 45543 4999999999999999999984 6889999999999987643
No 262
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.98 E-value=9.4e-10 Score=67.20 Aligned_cols=41 Identities=12% Similarity=0.185 Sum_probs=37.0
Q ss_pred CCccceEEEEECCHHHHHHHHHcCcccCCcEEEEeecCCCC
Q 032483 8 KAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKE 48 (139)
Q Consensus 8 g~srG~gFV~F~~~~~a~~Ai~~~~~i~gr~i~v~~~~~~~ 48 (139)
+++||||||+|.+.++|++||+....+.|++|.|+++.++.
T Consensus 51 ~~~rGfaFVeF~~~~~A~~Ai~~~~~~~g~~l~V~~a~~~~ 91 (100)
T 2d9o_A 51 SKKPGTAVVEFATVKAAELAVQNEVGLVDNPLKISWLEGQP 91 (100)
T ss_dssp SSSSSEEEEEESCHHHHHHHHHTCCBCSSSBCEEECSSCCC
T ss_pred cCCCCEEEEEECCHHHHHHHHHhcCCCCCCeEEEEEccCCC
Confidence 57999999999999999999998777899999999987653
No 263
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=98.97 E-value=3.9e-10 Score=70.19 Aligned_cols=38 Identities=16% Similarity=0.091 Sum_probs=34.5
Q ss_pred CCCceeEEeCCCCCCCHHHHHHHHhcCc-ceeEEEEecc
Q 032483 99 RIGKKIFVGRLPQEATAEDLRRYFSRFG-RILDVYVPKV 136 (139)
Q Consensus 99 ~~~~~lfV~nL~~~~t~~~L~~~F~~fG-~v~~~~i~~d 136 (139)
...++|||+|||+++++++|+++|++|| .|..+.|+.+
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~ 64 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR 64 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC
Confidence 4468999999999999999999999999 9999998643
No 264
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.97 E-value=1.3e-09 Score=65.07 Aligned_cols=39 Identities=5% Similarity=0.182 Sum_probs=35.7
Q ss_pred CCCCceeEEeCCCCCCCHHHHHHHHhcCcceeEEEEeccC
Q 032483 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKVR 137 (139)
Q Consensus 98 ~~~~~~lfV~nL~~~~t~~~L~~~F~~fG~v~~~~i~~d~ 137 (139)
....++|||+|||+++++++|+++|++| .|..|.|++|.
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~ 45 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNA 45 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECT
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECC
Confidence 3457899999999999999999999999 99999999883
No 265
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.97 E-value=1.2e-09 Score=66.00 Aligned_cols=38 Identities=24% Similarity=0.538 Sum_probs=33.3
Q ss_pred CCCCceeEEeCCCCCCCHHHHHHHHhcCcceeEEEEecc
Q 032483 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKV 136 (139)
Q Consensus 98 ~~~~~~lfV~nL~~~~t~~~L~~~F~~fG~v~~~~i~~d 136 (139)
....++|||+|||+++++++|+++|++||.|. +.++.+
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~ 53 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ 53 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC
Confidence 34578999999999999999999999999997 676654
No 266
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.97 E-value=4.3e-10 Score=70.24 Aligned_cols=39 Identities=15% Similarity=0.283 Sum_probs=34.9
Q ss_pred CCCceeEE--eCCCCCCCHHHHHHHHhcCcceeEEEEeccC
Q 032483 99 RIGKKIFV--GRLPQEATAEDLRRYFSRFGRILDVYVPKVR 137 (139)
Q Consensus 99 ~~~~~lfV--~nL~~~~t~~~L~~~F~~fG~v~~~~i~~d~ 137 (139)
.+.++||| +||++.+++++|+++|++||.|.+|.|+.++
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~r 63 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNK 63 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTTC
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCCC
Confidence 44689999 7799999999999999999999999988654
No 267
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.96 E-value=4.9e-10 Score=70.96 Aligned_cols=39 Identities=21% Similarity=0.222 Sum_probs=34.9
Q ss_pred CCCceeEEeCCCCCCCHHHHHHHHhcCcce----eEEEEeccC
Q 032483 99 RIGKKIFVGRLPQEATAEDLRRYFSRFGRI----LDVYVPKVR 137 (139)
Q Consensus 99 ~~~~~lfV~nL~~~~t~~~L~~~F~~fG~v----~~~~i~~d~ 137 (139)
...++|||+|||+++|+++|+++|++||.| ..|.|++|+
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~ 63 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP 63 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC
Confidence 346899999999999999999999999976 689999875
No 268
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=98.96 E-value=6.2e-10 Score=65.12 Aligned_cols=34 Identities=29% Similarity=0.605 Sum_probs=31.8
Q ss_pred ceeEEeCCCCCC------CHHHHHHHHhcCcceeEEEEec
Q 032483 102 KKIFVGRLPQEA------TAEDLRRYFSRFGRILDVYVPK 135 (139)
Q Consensus 102 ~~lfV~nL~~~~------t~~~L~~~F~~fG~v~~~~i~~ 135 (139)
++|||+|||+.+ ++++|+++|++||.|.+|.|++
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~ 41 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE 41 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecC
Confidence 689999999999 7799999999999999999874
No 269
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=98.96 E-value=8e-10 Score=68.32 Aligned_cols=37 Identities=22% Similarity=0.490 Sum_probs=34.5
Q ss_pred CCCCceeEEeCCCCCCCHHHHHHHHhcCcceeEEEEe
Q 032483 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP 134 (139)
Q Consensus 98 ~~~~~~lfV~nL~~~~t~~~L~~~F~~fG~v~~~~i~ 134 (139)
....++|||+|||+++++++|+++|++||.|..|.|+
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~ 64 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL 64 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE
Confidence 4557899999999999999999999999999999986
No 270
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=98.95 E-value=3.8e-10 Score=66.06 Aligned_cols=37 Identities=19% Similarity=0.266 Sum_probs=33.1
Q ss_pred CCCCCccceEEEEECCHHHHHHHHHc--CcccCCc-EEEE
Q 032483 5 QGSKAHRGIGFITFASADSVENLMVD--THELGGS-TVVV 41 (139)
Q Consensus 5 ~~tg~srG~gFV~F~~~~~a~~Ai~~--~~~i~gr-~i~v 41 (139)
+.||++||||||+|.+.++|++||.. +..++|+ +|.|
T Consensus 41 ~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 41 EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 47899999999999999999999994 6889998 8765
No 271
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.95 E-value=1.8e-09 Score=66.62 Aligned_cols=44 Identities=11% Similarity=0.236 Sum_probs=38.3
Q ss_pred CCCCccceEEEEECCHHHHHHHHHc--CcccCCcEEEEeecCCCCC
Q 032483 6 GSKAHRGIGFITFASADSVENLMVD--THELGGSTVVVDRATPKED 49 (139)
Q Consensus 6 ~tg~srG~gFV~F~~~~~a~~Ai~~--~~~i~gr~i~v~~~~~~~~ 49 (139)
.++++||||||+|.+.++|++||+. ...|+|+.|.|+++.++..
T Consensus 56 ~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~ 101 (109)
T 1x4a_A 56 NRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRG 101 (109)
T ss_dssp CSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCCCCCC
T ss_pred ECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcccCCC
Confidence 4567999999999999999999974 6889999999999876543
No 272
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=98.95 E-value=8.2e-10 Score=75.41 Aligned_cols=49 Identities=27% Similarity=0.518 Sum_probs=43.4
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHHc--CcccCCcEEEEeecCCCCC
Q 032483 1 MPKDQGSKAHRGIGFITFASADSVENLMVD--THELGGSTVVVDRATPKED 49 (139)
Q Consensus 1 i~~d~~tg~srG~gFV~F~~~~~a~~Ai~~--~~~i~gr~i~v~~~~~~~~ 49 (139)
|++|+.+|+++|||||+|.+.++|.+|++. +..|+|++|.|.++.++..
T Consensus 157 i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~~~~~ 207 (216)
T 2qfj_A 157 LARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPM 207 (216)
T ss_dssp EEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECSSCSS
T ss_pred EEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEecCCCC
Confidence 356788999999999999999999999994 6889999999999987643
No 273
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=98.95 E-value=7.9e-10 Score=66.05 Aligned_cols=44 Identities=18% Similarity=0.255 Sum_probs=39.1
Q ss_pred CCCCccceEEEEECCHHHHHHHHHc--CcccCCcEEEEeecCCCCC
Q 032483 6 GSKAHRGIGFITFASADSVENLMVD--THELGGSTVVVDRATPKED 49 (139)
Q Consensus 6 ~tg~srG~gFV~F~~~~~a~~Ai~~--~~~i~gr~i~v~~~~~~~~ 49 (139)
.+|++||||||+|.+.++|++||+. +..++|+.|.|+++.+...
T Consensus 43 ~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~~ 88 (92)
T 2dgv_A 43 ENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDRNASG 88 (92)
T ss_dssp SSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECSCCSS
T ss_pred cCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCCCC
Confidence 4789999999999999999999994 6889999999999876543
No 274
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=98.93 E-value=9.3e-10 Score=66.44 Aligned_cols=38 Identities=32% Similarity=0.655 Sum_probs=33.6
Q ss_pred CCCCceeEEeCCCC-CCCHHHHHHHHhcCcceeEEEEec
Q 032483 98 QRIGKKIFVGRLPQ-EATAEDLRRYFSRFGRILDVYVPK 135 (139)
Q Consensus 98 ~~~~~~lfV~nL~~-~~t~~~L~~~F~~fG~v~~~~i~~ 135 (139)
....++|||+|||+ .+++++|+++|++||.|.+|.|.+
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~ 45 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIKN 45 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEET
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEeC
Confidence 34578999999999 999999999999999999999864
No 275
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=98.93 E-value=1.4e-09 Score=73.01 Aligned_cols=40 Identities=25% Similarity=0.423 Sum_probs=37.4
Q ss_pred CCCCceeEEeCCCCCCCHHHHHHHHhcCcceeEEEEeccC
Q 032483 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKVR 137 (139)
Q Consensus 98 ~~~~~~lfV~nL~~~~t~~~L~~~F~~fG~v~~~~i~~d~ 137 (139)
....++|||+|||+.+++++|+++|++||.|+.|.|+.|+
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~ 124 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR 124 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC
Confidence 4567899999999999999999999999999999999886
No 276
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=98.93 E-value=1.8e-09 Score=65.45 Aligned_cols=38 Identities=32% Similarity=0.731 Sum_probs=34.5
Q ss_pred CCCCceeEEeCCCC-CCCHHHHHHHHhcCcceeEEEEec
Q 032483 98 QRIGKKIFVGRLPQ-EATAEDLRRYFSRFGRILDVYVPK 135 (139)
Q Consensus 98 ~~~~~~lfV~nL~~-~~t~~~L~~~F~~fG~v~~~~i~~ 135 (139)
....++|||+|||+ .+++++|+++|++||.|.+|.|.+
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~~ 57 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIKN 57 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEECS
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEeC
Confidence 45578999999998 999999999999999999999853
No 277
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=98.92 E-value=2.7e-09 Score=65.48 Aligned_cols=37 Identities=30% Similarity=0.584 Sum_probs=33.7
Q ss_pred CCCceeEEeCCCCCC------CHHHHHHHHhcCcceeEEEEec
Q 032483 99 RIGKKIFVGRLPQEA------TAEDLRRYFSRFGRILDVYVPK 135 (139)
Q Consensus 99 ~~~~~lfV~nL~~~~------t~~~L~~~F~~fG~v~~~~i~~ 135 (139)
...++|||+|||+.+ ++++|+++|++||.|.+|.|++
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~ 55 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE 55 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCC
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeC
Confidence 446899999999999 7899999999999999999984
No 278
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.91 E-value=1.1e-09 Score=67.81 Aligned_cols=44 Identities=20% Similarity=0.438 Sum_probs=38.0
Q ss_pred CCCCCCCCccceEEEEECCHHHHHHHHHc--CcccCCcEEEEeecCCC
Q 032483 2 PKDQGSKAHRGIGFITFASADSVENLMVD--THELGGSTVVVDRATPK 47 (139)
Q Consensus 2 ~~d~~tg~srG~gFV~F~~~~~a~~Ai~~--~~~i~gr~i~v~~~~~~ 47 (139)
++|+ +++||||||+|.+.++|++|++. +..++|+.|.|+++.++
T Consensus 62 ~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 107 (109)
T 2err_A 62 IFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATAR 107 (109)
T ss_dssp CCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEECCCS
T ss_pred EECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCC
Confidence 4553 45999999999999999999994 68899999999998765
No 279
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=98.91 E-value=2e-09 Score=66.99 Aligned_cols=39 Identities=23% Similarity=0.428 Sum_probs=35.2
Q ss_pred CCccceEEEEECCHHHHHHHHHc--CcccCCcEEEEeecCC
Q 032483 8 KAHRGIGFITFASADSVENLMVD--THELGGSTVVVDRATP 46 (139)
Q Consensus 8 g~srG~gFV~F~~~~~a~~Ai~~--~~~i~gr~i~v~~~~~ 46 (139)
+++||||||+|.+.++|++||+. +..|+||.|.|+++..
T Consensus 64 ~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~ 104 (111)
T 2jvr_A 64 RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDN 104 (111)
T ss_dssp CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC
T ss_pred CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCC
Confidence 46999999999999999999984 6899999999998764
No 280
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=98.90 E-value=3.7e-09 Score=80.08 Aligned_cols=49 Identities=20% Similarity=0.323 Sum_probs=44.0
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHHc--CcccCCcEEEEeecCCCCC
Q 032483 1 MPKDQGSKAHRGIGFITFASADSVENLMVD--THELGGSTVVVDRATPKED 49 (139)
Q Consensus 1 i~~d~~tg~srG~gFV~F~~~~~a~~Ai~~--~~~i~gr~i~v~~~~~~~~ 49 (139)
|++|+.||+++|||||+|.+.++|.+||.. +..|+|+.|.|.++.++..
T Consensus 134 i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a~~~~~ 184 (437)
T 3pgw_S 134 MVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERGRTV 184 (437)
T ss_pred eeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEeCCCCC
Confidence 578889999999999999999999999984 6899999999999986543
No 281
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=98.90 E-value=8.2e-10 Score=74.46 Aligned_cols=48 Identities=19% Similarity=0.406 Sum_probs=43.0
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHHc--CcccCCcEEEEeecCCCC
Q 032483 1 MPKDQGSKAHRGIGFITFASADSVENLMVD--THELGGSTVVVDRATPKE 48 (139)
Q Consensus 1 i~~d~~tg~srG~gFV~F~~~~~a~~Ai~~--~~~i~gr~i~v~~~~~~~ 48 (139)
|++|+.+|+++|||||+|.+.++|.+|++. +..|+|+.|.|.++.++.
T Consensus 146 ~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 195 (198)
T 2yh0_A 146 LVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGA 195 (198)
T ss_dssp EEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCCC
T ss_pred EeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCC
Confidence 356778999999999999999999999994 788999999999998764
No 282
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=98.90 E-value=1.5e-09 Score=72.81 Aligned_cols=46 Identities=15% Similarity=0.182 Sum_probs=41.1
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHHc--CcccCCcEEEEeecCCC
Q 032483 1 MPKDQGSKAHRGIGFITFASADSVENLMVD--THELGGSTVVVDRATPK 47 (139)
Q Consensus 1 i~~d~~tg~srG~gFV~F~~~~~a~~Ai~~--~~~i~gr~i~v~~~~~~ 47 (139)
|++|+ +|+++|||||+|.+.++|++||+. +..|+|++|.|.++.+.
T Consensus 120 i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~~~ 167 (177)
T 2f3j_A 120 VDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVASQ 167 (177)
T ss_dssp ECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEESSG
T ss_pred EEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEecCC
Confidence 45677 999999999999999999999994 68899999999998754
No 283
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=98.90 E-value=6.2e-10 Score=71.97 Aligned_cols=44 Identities=18% Similarity=0.231 Sum_probs=39.5
Q ss_pred CCCCCccceEEEEECCHHHHHHHHHc--CcccCCcEEEEeecCCCC
Q 032483 5 QGSKAHRGIGFITFASADSVENLMVD--THELGGSTVVVDRATPKE 48 (139)
Q Consensus 5 ~~tg~srG~gFV~F~~~~~a~~Ai~~--~~~i~gr~i~v~~~~~~~ 48 (139)
..+|++||||||+|.+.++|.+||.. +..|+|+.|.|.++.+..
T Consensus 86 ~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~~ 131 (143)
T 3egn_A 86 MKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQFARSAR 131 (143)
T ss_dssp EEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEECEEEECCCSC
T ss_pred ccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECCCCC
Confidence 46899999999999999999999994 688999999999987643
No 284
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.89 E-value=1.2e-09 Score=66.04 Aligned_cols=41 Identities=17% Similarity=0.242 Sum_probs=37.2
Q ss_pred CCCccceEEEEECCHHHHHHHHHc--CcccCCcEEEEeecCCC
Q 032483 7 SKAHRGIGFITFASADSVENLMVD--THELGGSTVVVDRATPK 47 (139)
Q Consensus 7 tg~srG~gFV~F~~~~~a~~Ai~~--~~~i~gr~i~v~~~~~~ 47 (139)
+++++|||||+|.+.++|++||+. +..|+|+.|.|+++.++
T Consensus 52 ~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 94 (97)
T 2e5j_A 52 WQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQQ 94 (97)
T ss_dssp EETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCCC
T ss_pred cCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCC
Confidence 468999999999999999999984 68899999999998765
No 285
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=98.89 E-value=2.1e-09 Score=64.11 Aligned_cols=40 Identities=28% Similarity=0.483 Sum_probs=31.8
Q ss_pred ccceEEEEECCHHHHHHHHHcCcccCCcEEEEeecCCCCC
Q 032483 10 HRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKED 49 (139)
Q Consensus 10 srG~gFV~F~~~~~a~~Ai~~~~~i~gr~i~v~~~~~~~~ 49 (139)
|||||||+|.+.++|+++....+.+.|+.|.|+++.++..
T Consensus 47 srGfaFV~F~~~~~A~~~~~~~~~~~g~~v~v~~a~~k~~ 86 (89)
T 3d2w_A 47 FRAFAFVTFADDKVAQSLCGEDLIIKGISVHISNAEPKHN 86 (89)
T ss_dssp CCSEEEEEESCHHHHHHHTTCEEEETTEEEEEEECC----
T ss_pred CCCEEEEEECCHHHHHHHcCCCcccCCEEEEEEEcCCCCc
Confidence 8999999999999999655455678899999999987643
No 286
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=98.89 E-value=2.1e-09 Score=68.53 Aligned_cols=38 Identities=26% Similarity=0.325 Sum_probs=34.2
Q ss_pred CCCceeEEeCCCCCCCHHHHHHHHhcCcceeEEEEecc
Q 032483 99 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKV 136 (139)
Q Consensus 99 ~~~~~lfV~nL~~~~t~~~L~~~F~~fG~v~~~~i~~d 136 (139)
...-+|||+||++.+|+++|+++|++||+|.+|.|+.+
T Consensus 26 s~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~ 63 (130)
T 3zzy_A 26 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK 63 (130)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE
T ss_pred CceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC
Confidence 34568999999999999999999999999999988764
No 287
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=98.89 E-value=3.1e-09 Score=67.58 Aligned_cols=38 Identities=24% Similarity=0.328 Sum_probs=33.3
Q ss_pred CCCceeEEeCCCCCCCHHHHH----HHHhcCcceeEEEEecc
Q 032483 99 RIGKKIFVGRLPQEATAEDLR----RYFSRFGRILDVYVPKV 136 (139)
Q Consensus 99 ~~~~~lfV~nL~~~~t~~~L~----~~F~~fG~v~~~~i~~d 136 (139)
.+.++|||+|||+.+++++|+ ++|++||.|.+|.+.++
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~ 68 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLS 68 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccC
Confidence 447899999999999999876 69999999999988653
No 288
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=98.89 E-value=1.9e-09 Score=71.34 Aligned_cols=39 Identities=28% Similarity=0.340 Sum_probs=34.9
Q ss_pred CCCCceeEEeCCCCCCCHHHHHHHHhcCcceeEEEEecc
Q 032483 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKV 136 (139)
Q Consensus 98 ~~~~~~lfV~nL~~~~t~~~L~~~F~~fG~v~~~~i~~d 136 (139)
.....+|||+||++.+|+++|+++|++||.|++|.|..+
T Consensus 43 ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k 81 (164)
T 1sjr_A 43 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK 81 (164)
T ss_dssp CCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES
T ss_pred CCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC
Confidence 344678999999999999999999999999999998754
No 289
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=98.88 E-value=2.5e-09 Score=64.43 Aligned_cols=38 Identities=34% Similarity=0.729 Sum_probs=34.1
Q ss_pred CCCCceeEEeCCCCCCCHHHHH----HHHhcCcceeEEEEec
Q 032483 98 QRIGKKIFVGRLPQEATAEDLR----RYFSRFGRILDVYVPK 135 (139)
Q Consensus 98 ~~~~~~lfV~nL~~~~t~~~L~----~~F~~fG~v~~~~i~~ 135 (139)
..+.++|||+|||+++++++|+ ++|++||.|..|.|+.
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~ 46 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR 46 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc
Confidence 3457899999999999999999 9999999999999873
No 290
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=98.88 E-value=2.3e-09 Score=63.31 Aligned_cols=39 Identities=23% Similarity=0.527 Sum_probs=35.6
Q ss_pred CCCceeEEeCCCCCCCHHHHHHHHhcC----c-------ceeEEEEeccC
Q 032483 99 RIGKKIFVGRLPQEATAEDLRRYFSRF----G-------RILDVYVPKVR 137 (139)
Q Consensus 99 ~~~~~lfV~nL~~~~t~~~L~~~F~~f----G-------~v~~~~i~~d~ 137 (139)
...++|||+|||+++++++|+++|++| | .|.++.+.+++
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~k 53 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDK 53 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCCC
Confidence 346899999999999999999999999 8 99999998764
No 291
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=98.88 E-value=9.1e-10 Score=66.40 Aligned_cols=43 Identities=19% Similarity=0.253 Sum_probs=38.2
Q ss_pred CCCCccceEEEEECCHHHHHHHHH--cCcccCCcEEEEeecCCCC
Q 032483 6 GSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKE 48 (139)
Q Consensus 6 ~tg~srG~gFV~F~~~~~a~~Ai~--~~~~i~gr~i~v~~~~~~~ 48 (139)
.+|+++|||||+|.+.++|++|+. ++..++|+.|.|.++.++.
T Consensus 46 ~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 90 (97)
T 1nu4_A 46 RSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKTDS 90 (97)
T ss_dssp HHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSSCC
T ss_pred cCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEEEccCCC
Confidence 357889999999999999999998 4788999999999988753
No 292
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.88 E-value=9.6e-09 Score=65.05 Aligned_cols=35 Identities=11% Similarity=0.049 Sum_probs=32.1
Q ss_pred CceeEEeCCCCCCCHHHHHHHHhcCcceeEEEEec
Q 032483 101 GKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK 135 (139)
Q Consensus 101 ~~~lfV~nL~~~~t~~~L~~~F~~fG~v~~~~i~~ 135 (139)
.-.|||+||++.+|+++|+++|++||.|.+|.|+.
T Consensus 25 vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~ 59 (124)
T 2e5i_A 25 VLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFK 59 (124)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEE
T ss_pred EEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEe
Confidence 45678999999999999999999999999999864
No 293
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.87 E-value=6.3e-09 Score=62.82 Aligned_cols=42 Identities=14% Similarity=0.291 Sum_probs=37.0
Q ss_pred CCccceEEEEECCHHHHHHHHHc--CcccCCcEEEEeecCCCCC
Q 032483 8 KAHRGIGFITFASADSVENLMVD--THELGGSTVVVDRATPKED 49 (139)
Q Consensus 8 g~srG~gFV~F~~~~~a~~Ai~~--~~~i~gr~i~v~~~~~~~~ 49 (139)
+++||||||+|.+.++|++||.. +..|+|++|.|.++.++..
T Consensus 46 ~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~~~ 89 (97)
T 1x5p_A 46 DPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQPM 89 (97)
T ss_dssp ETTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSSCCC
T ss_pred cCCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCCCC
Confidence 37899999999999999999984 6789999999999977643
No 294
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=98.37 E-value=2.5e-10 Score=71.28 Aligned_cols=40 Identities=28% Similarity=0.409 Sum_probs=36.4
Q ss_pred CCCceeEEeCCCCCCCHHHHHHHHhcCcceeE--------EEEeccCC
Q 032483 99 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILD--------VYVPKVRQ 138 (139)
Q Consensus 99 ~~~~~lfV~nL~~~~t~~~L~~~F~~fG~v~~--------~~i~~d~~ 138 (139)
...++|||+|||+++++++|+++|++||.|.. |.|++|+.
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~ 52 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRE 52 (116)
Confidence 34689999999999999999999999999999 88988864
No 295
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=98.86 E-value=2.9e-09 Score=73.85 Aligned_cols=40 Identities=18% Similarity=0.216 Sum_probs=37.0
Q ss_pred CCCCceeEEeCCCC-CCCHHHHHHHHhcCcceeEEEEeccC
Q 032483 98 QRIGKKIFVGRLPQ-EATAEDLRRYFSRFGRILDVYVPKVR 137 (139)
Q Consensus 98 ~~~~~~lfV~nL~~-~~t~~~L~~~F~~fG~v~~~~i~~d~ 137 (139)
....++|||+|||+ ++++++|+++|++||.|.+|+|++|+
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~ 71 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK 71 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC
Confidence 34578999999999 99999999999999999999999886
No 296
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.84 E-value=6.7e-09 Score=63.08 Aligned_cols=36 Identities=28% Similarity=0.347 Sum_probs=31.2
Q ss_pred CCCCceeEEeCCCCCCCHHHHHHHHhcCcceeEEEEecc
Q 032483 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKV 136 (139)
Q Consensus 98 ~~~~~~lfV~nL~~~~t~~~L~~~F~~fG~v~~~~i~~d 136 (139)
....++|||+|||+.+++++|+++|++||.| +|+.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~ 47 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN 47 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC
Confidence 3457899999999999999999999999988 45554
No 297
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=98.84 E-value=9e-10 Score=69.24 Aligned_cols=39 Identities=15% Similarity=0.133 Sum_probs=35.6
Q ss_pred CCCccceEEEEECCHHHHHHHHHc--CcccCCcEEEEeecC
Q 032483 7 SKAHRGIGFITFASADSVENLMVD--THELGGSTVVVDRAT 45 (139)
Q Consensus 7 tg~srG~gFV~F~~~~~a~~Ai~~--~~~i~gr~i~v~~~~ 45 (139)
+++++||+||+|.+.++|.+|+.. +..++||.|.|.++.
T Consensus 67 ~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~GR~i~v~~~~ 107 (118)
T 3ue2_A 67 DAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 107 (118)
T ss_dssp TCEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CCcceEEEEEEECCHHHHHHHHHHHCCCEECCcEEEEEEcC
Confidence 578999999999999999999994 789999999999864
No 298
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=98.84 E-value=3.2e-09 Score=80.44 Aligned_cols=40 Identities=28% Similarity=0.428 Sum_probs=36.9
Q ss_pred CCCceeEEeCCCCCCCHHHHHHHHhcCcceeEEEEeccCC
Q 032483 99 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKVRQ 138 (139)
Q Consensus 99 ~~~~~lfV~nL~~~~t~~~L~~~F~~fG~v~~~~i~~d~~ 138 (139)
...++|||+|||+.+|+++|+++|++||.|+.|.|+.|+.
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~ 139 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKR 139 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCC
Confidence 3468999999999999999999999999999999999864
No 299
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=98.84 E-value=4.1e-09 Score=69.76 Aligned_cols=43 Identities=23% Similarity=0.383 Sum_probs=39.3
Q ss_pred CCCCCccceEEEEECCHHHHHHHHHc--CcccCCcEEEEeecCCC
Q 032483 5 QGSKAHRGIGFITFASADSVENLMVD--THELGGSTVVVDRATPK 47 (139)
Q Consensus 5 ~~tg~srG~gFV~F~~~~~a~~Ai~~--~~~i~gr~i~v~~~~~~ 47 (139)
..+|+++|||||+|.+.++|.+|+.. +..|+|++|.|.++.++
T Consensus 130 ~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 130 SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSSC
T ss_pred cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCCC
Confidence 46889999999999999999999994 68899999999999876
No 300
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.84 E-value=5e-09 Score=65.04 Aligned_cols=41 Identities=12% Similarity=0.278 Sum_probs=36.7
Q ss_pred CccceEEEEECCHHHHHHHHHc--CcccCCcEEEEeecCCCCC
Q 032483 9 AHRGIGFITFASADSVENLMVD--THELGGSTVVVDRATPKED 49 (139)
Q Consensus 9 ~srG~gFV~F~~~~~a~~Ai~~--~~~i~gr~i~v~~~~~~~~ 49 (139)
.+||||||+|.+.++|++||.. +..++||+|.|.++.++..
T Consensus 62 ~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~v~~a~~~~~ 104 (112)
T 2dit_A 62 HPDGVASVSFRDPEEADYCIQTLDGRWFGGRQITAQAWDGTTD 104 (112)
T ss_dssp CTTCEEEEECSCHHHHHHHHHHSTTCEETTEECEEEECCSCCC
T ss_pred CCCEEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeCCCCC
Confidence 3899999999999999999984 6889999999999987644
No 301
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=98.83 E-value=1.7e-08 Score=61.56 Aligned_cols=41 Identities=22% Similarity=0.409 Sum_probs=36.1
Q ss_pred ccceEEEEECCHHHHHHHHHc--CcccCCcEEEEeecCCCCCC
Q 032483 10 HRGIGFITFASADSVENLMVD--THELGGSTVVVDRATPKEDD 50 (139)
Q Consensus 10 srG~gFV~F~~~~~a~~Ai~~--~~~i~gr~i~v~~~~~~~~~ 50 (139)
.||||||+|.+.++|++||+. .+.|+|+.|.|.++.++...
T Consensus 44 ~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 86 (103)
T 2dgu_A 44 LKDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQK 86 (103)
T ss_dssp CSSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCCCCC
T ss_pred ECCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCCccc
Confidence 378999999999999999994 68899999999999876543
No 302
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=98.82 E-value=5e-09 Score=71.15 Aligned_cols=37 Identities=16% Similarity=0.581 Sum_probs=35.2
Q ss_pred CceeEEeCCCCCCCHHHHHHHHhcCcceeEEEEeccC
Q 032483 101 GKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKVR 137 (139)
Q Consensus 101 ~~~lfV~nL~~~~t~~~L~~~F~~fG~v~~~~i~~d~ 137 (139)
.++|||+|||+++++++|+++|++||+|.+|+|++|+
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~ 145 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL 145 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC
Confidence 5799999999999999999999999999999999875
No 303
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=98.82 E-value=1e-09 Score=66.79 Aligned_cols=38 Identities=16% Similarity=0.144 Sum_probs=33.1
Q ss_pred CCCceeEEeCCCCCCCHHHHHHHHhcCcceeEEEEeccC
Q 032483 99 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKVR 137 (139)
Q Consensus 99 ~~~~~lfV~nL~~~~t~~~L~~~F~~fG~v~~~~i~~d~ 137 (139)
...++|||+|||+++++++|+++|++||.|.. .+++|+
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~ 52 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDV 52 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecC
Confidence 34689999999999999999999999999988 566553
No 304
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.82 E-value=3e-09 Score=65.43 Aligned_cols=40 Identities=18% Similarity=0.287 Sum_probs=34.7
Q ss_pred ccceEEEEECCHHHHHHHHHc----CcccCCcEEEEeecCCCCC
Q 032483 10 HRGIGFITFASADSVENLMVD----THELGGSTVVVDRATPKED 49 (139)
Q Consensus 10 srG~gFV~F~~~~~a~~Ai~~----~~~i~gr~i~v~~~~~~~~ 49 (139)
.||||||+|.+.++|++||+. +..|+||+|.|.++.++..
T Consensus 51 ~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~~~~~ 94 (105)
T 1sjq_A 51 GKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKEL 94 (105)
T ss_dssp TTTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCSSSSC
T ss_pred CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcCCCCC
Confidence 389999999999999999983 2689999999999877643
No 305
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.82 E-value=2.7e-09 Score=63.88 Aligned_cols=35 Identities=26% Similarity=0.401 Sum_probs=30.5
Q ss_pred CCCceeEEeCCCCCCCHHHHHHHHhcCcc-eeEEEE
Q 032483 99 RIGKKIFVGRLPQEATAEDLRRYFSRFGR-ILDVYV 133 (139)
Q Consensus 99 ~~~~~lfV~nL~~~~t~~~L~~~F~~fG~-v~~~~i 133 (139)
...++|||+|||+++|+++|+++|++||. |..+.+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~ 41 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVL 41 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEE
Confidence 34689999999999999999999999999 665554
No 306
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.80 E-value=6e-09 Score=62.34 Aligned_cols=41 Identities=20% Similarity=0.282 Sum_probs=36.4
Q ss_pred CccceEEEEECCHHHHHHHHHc--C-cccCCcEEEEeecCCCCC
Q 032483 9 AHRGIGFITFASADSVENLMVD--T-HELGGSTVVVDRATPKED 49 (139)
Q Consensus 9 ~srG~gFV~F~~~~~a~~Ai~~--~-~~i~gr~i~v~~~~~~~~ 49 (139)
.++|||||+|.+.++|++||+. + ..++|++|.|+++.++..
T Consensus 42 ~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~~~ 85 (93)
T 2cqh_A 42 LKSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVSKKL 85 (93)
T ss_dssp EETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCCCCC
T ss_pred cCCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEccCccc
Confidence 4799999999999999999984 6 889999999999987643
No 307
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.80 E-value=1.5e-08 Score=61.35 Aligned_cols=41 Identities=24% Similarity=0.413 Sum_probs=36.2
Q ss_pred CccceEEEEECCHHHHHHHHH--cCcccCCcEEEEeecCCCCC
Q 032483 9 AHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKED 49 (139)
Q Consensus 9 ~srG~gFV~F~~~~~a~~Ai~--~~~~i~gr~i~v~~~~~~~~ 49 (139)
.+||||||+|.+.++|++||. ++..|+|+.|.|.++.++..
T Consensus 49 ~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 91 (99)
T 2cpd_A 49 KIRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKPVDK 91 (99)
T ss_dssp ECSSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCCCCCC
T ss_pred EeCCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECCCCCC
Confidence 458999999999999999999 46889999999999987643
No 308
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=98.80 E-value=9.8e-09 Score=62.57 Aligned_cols=40 Identities=13% Similarity=0.186 Sum_probs=34.4
Q ss_pred CccceEEEEECCHHHHHHHHHc--C--cccCCcEEEEeecCCCC
Q 032483 9 AHRGIGFITFASADSVENLMVD--T--HELGGSTVVVDRATPKE 48 (139)
Q Consensus 9 ~srG~gFV~F~~~~~a~~Ai~~--~--~~i~gr~i~v~~~~~~~ 48 (139)
++||||||+|.+.++|.+|++. + ..|.||+|.|.++.+++
T Consensus 55 ~~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~~k~ 98 (100)
T 3r27_A 55 PKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTSQK 98 (100)
T ss_dssp TTTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECSCSC
T ss_pred cCCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEeccccc
Confidence 4689999999999999999984 2 35899999999987653
No 309
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.79 E-value=6.3e-09 Score=64.74 Aligned_cols=41 Identities=15% Similarity=0.205 Sum_probs=35.7
Q ss_pred CccceEEEEECCHHHHHHHHHc----CcccCCcEEEEeecCCCCC
Q 032483 9 AHRGIGFITFASADSVENLMVD----THELGGSTVVVDRATPKED 49 (139)
Q Consensus 9 ~srG~gFV~F~~~~~a~~Ai~~----~~~i~gr~i~v~~~~~~~~ 49 (139)
++||||||+|.+.++|++||+. ...|+||+|.|.++.++..
T Consensus 60 ~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~~~~ 104 (112)
T 1x4f_A 60 RMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEKYKK 104 (112)
T ss_dssp TTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEECSCSS
T ss_pred cCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECccccc
Confidence 5799999999999999999983 3569999999999976644
No 310
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.79 E-value=2.1e-08 Score=60.50 Aligned_cols=37 Identities=32% Similarity=0.467 Sum_probs=32.5
Q ss_pred CCCCceeEEeCCCCCCCHHHHHHHHhcCcceeEEEEecc
Q 032483 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKV 136 (139)
Q Consensus 98 ~~~~~~lfV~nL~~~~t~~~L~~~F~~fG~v~~~~i~~d 136 (139)
....++|||+|| ++++++|+++|++||.|.+|.|...
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~~~ 48 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPP 48 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEETT
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEecCC
Confidence 345789999996 8999999999999999999998643
No 311
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.79 E-value=1.1e-08 Score=62.43 Aligned_cols=40 Identities=15% Similarity=0.252 Sum_probs=34.8
Q ss_pred ccceEEEEECCHHHHHHHHHc----CcccCCcEEEEeecCCCCC
Q 032483 10 HRGIGFITFASADSVENLMVD----THELGGSTVVVDRATPKED 49 (139)
Q Consensus 10 srG~gFV~F~~~~~a~~Ai~~----~~~i~gr~i~v~~~~~~~~ 49 (139)
.||||||+|.+.++|++||+. ...++||+|.|.++.++..
T Consensus 50 ~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~~~ 93 (101)
T 2cq1_A 50 GKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNHKEL 93 (101)
T ss_dssp TTTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECSCSSC
T ss_pred CCCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcCcccC
Confidence 389999999999999999983 4679999999999976543
No 312
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.78 E-value=6.4e-09 Score=61.63 Aligned_cols=40 Identities=28% Similarity=0.480 Sum_probs=35.4
Q ss_pred ccceEEEEECCHHHHHHHHHcCcccCCcEEEEeecCCCCC
Q 032483 10 HRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKED 49 (139)
Q Consensus 10 srG~gFV~F~~~~~a~~Ai~~~~~i~gr~i~v~~~~~~~~ 49 (139)
+||||||+|.+.++|++|+...+.++|++|.|.++.++..
T Consensus 41 ~~g~afV~f~~~~~a~~~~~~~~~~~g~~l~v~~a~~~~~ 80 (88)
T 1wf0_A 41 FRAFAFVTFADDQIAQSLCGEDLIIKGISVHISNAEPKHN 80 (88)
T ss_dssp CCSCCEEECSCHHHHHHTTTCEEEETTEEEEEECCCCCCC
T ss_pred CCCEEEEEECCHHHHHHHhcCCceeCCEEEEEEecCCCCC
Confidence 8999999999999999877666778999999999887754
No 313
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.78 E-value=1.1e-08 Score=63.02 Aligned_cols=39 Identities=21% Similarity=0.423 Sum_probs=35.3
Q ss_pred cceEEEEECCHHHHHHHHH--cCcccCCcEEEEeecCCCCC
Q 032483 11 RGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKED 49 (139)
Q Consensus 11 rG~gFV~F~~~~~a~~Ai~--~~~~i~gr~i~v~~~~~~~~ 49 (139)
||||||+|.+.++|++||. +++.|+|+.|.|.++.++..
T Consensus 61 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 101 (109)
T 1x4g_A 61 KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPD 101 (109)
T ss_dssp TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCCCS
T ss_pred CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCCCC
Confidence 8999999999999999998 46889999999999987654
No 314
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=98.78 E-value=3.9e-09 Score=64.14 Aligned_cols=39 Identities=13% Similarity=0.320 Sum_probs=35.0
Q ss_pred CccceEEEEECCHHHHHHHHHc--CcccCCcEEEEeecCCC
Q 032483 9 AHRGIGFITFASADSVENLMVD--THELGGSTVVVDRATPK 47 (139)
Q Consensus 9 ~srG~gFV~F~~~~~a~~Ai~~--~~~i~gr~i~v~~~~~~ 47 (139)
++||||||+|.+.++|++||.. +..++|+.|.|+++.++
T Consensus 61 ~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 101 (101)
T 2la4_A 61 PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKER 101 (101)
T ss_dssp TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCCC
T ss_pred cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccCC
Confidence 6899999999999999999984 68899999999988653
No 315
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=98.78 E-value=7.3e-09 Score=65.28 Aligned_cols=40 Identities=15% Similarity=0.326 Sum_probs=36.3
Q ss_pred CccceEEEEECCHHHHHHHHHc--CcccCCcEEEEeecCCCC
Q 032483 9 AHRGIGFITFASADSVENLMVD--THELGGSTVVVDRATPKE 48 (139)
Q Consensus 9 ~srG~gFV~F~~~~~a~~Ai~~--~~~i~gr~i~v~~~~~~~ 48 (139)
++||||||+|.+.++|++||.. +..++|+.|.|.++.++.
T Consensus 71 ~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~~ 112 (121)
T 2bz2_A 71 PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQP 112 (121)
T ss_dssp TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSSC
T ss_pred CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCCC
Confidence 6899999999999999999984 688999999999998764
No 316
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=98.78 E-value=6.3e-09 Score=61.75 Aligned_cols=39 Identities=13% Similarity=0.305 Sum_probs=35.0
Q ss_pred CccceEEEEECCHHHHHHHHHc--CcccCCcEEEEeecCCC
Q 032483 9 AHRGIGFITFASADSVENLMVD--THELGGSTVVVDRATPK 47 (139)
Q Consensus 9 ~srG~gFV~F~~~~~a~~Ai~~--~~~i~gr~i~v~~~~~~ 47 (139)
++||||||+|.+.++|++|++. +..++|++|.|.++...
T Consensus 38 ~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 78 (88)
T 1wg1_A 38 RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTD 78 (88)
T ss_dssp GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCC
Confidence 6899999999999999999994 68899999999997543
No 317
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=98.77 E-value=5.2e-09 Score=71.06 Aligned_cols=44 Identities=16% Similarity=0.265 Sum_probs=38.2
Q ss_pred CCCCCCCCccceEEEEECCHHHHHHHHHc-CcccCCcEEEEeecCC
Q 032483 2 PKDQGSKAHRGIGFITFASADSVENLMVD-THELGGSTVVVDRATP 46 (139)
Q Consensus 2 ~~d~~tg~srG~gFV~F~~~~~a~~Ai~~-~~~i~gr~i~v~~~~~ 46 (139)
++|. +|++||||||+|.+.++|++||+. .+.++|++|.|+++..
T Consensus 142 ~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 142 RRTL-HKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDD 186 (193)
T ss_dssp EECT-TCCEEEEEEEEESSHHHHHHHHHCTTCEETTEECEEEETTT
T ss_pred EECC-CCCcccEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEhHH
Confidence 4554 599999999999999999999995 5789999999998654
No 318
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.75 E-value=2.6e-08 Score=61.11 Aligned_cols=40 Identities=15% Similarity=0.227 Sum_probs=34.5
Q ss_pred ccceEEEEECCHHHHHHHHHc----CcccCCcEEEEeecCCCCC
Q 032483 10 HRGIGFITFASADSVENLMVD----THELGGSTVVVDRATPKED 49 (139)
Q Consensus 10 srG~gFV~F~~~~~a~~Ai~~----~~~i~gr~i~v~~~~~~~~ 49 (139)
+||||||+|.+.++|++||+. ...|+|++|.|.++.++..
T Consensus 50 ~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~~~~~ 93 (104)
T 1wex_A 50 FKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYSTSKRI 93 (104)
T ss_dssp TTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECSSSSC
T ss_pred CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEccCccc
Confidence 489999999999999999983 3569999999999976543
No 319
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=98.75 E-value=1.5e-08 Score=71.63 Aligned_cols=40 Identities=35% Similarity=0.718 Sum_probs=36.5
Q ss_pred CCCCceeEEeCCCCCCCHHHHHHHHhcCcceeEEEEeccC
Q 032483 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKVR 137 (139)
Q Consensus 98 ~~~~~~lfV~nL~~~~t~~~L~~~F~~fG~v~~~~i~~d~ 137 (139)
....++|||+|||+++|+++|+++|++||.|..|.|.+++
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~k 58 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDR 58 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETTT
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCCC
Confidence 4556899999999999999999999999999999998764
No 320
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.75 E-value=2e-08 Score=61.47 Aligned_cols=40 Identities=15% Similarity=0.127 Sum_probs=34.2
Q ss_pred ccceEEEEECCHHHHHHHHHc----CcccCCcEEEEeecCCCCC
Q 032483 10 HRGIGFITFASADSVENLMVD----THELGGSTVVVDRATPKED 49 (139)
Q Consensus 10 srG~gFV~F~~~~~a~~Ai~~----~~~i~gr~i~v~~~~~~~~ 49 (139)
.||||||+|.+.++|++||+. ...|+||+|.|.++..+..
T Consensus 51 ~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~~~ 94 (102)
T 1x4d_A 51 KINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQKYKR 94 (102)
T ss_dssp SSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEECCCTT
T ss_pred CCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECCCCCC
Confidence 479999999999999999994 2469999999999976543
No 321
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.75 E-value=2e-08 Score=59.69 Aligned_cols=39 Identities=18% Similarity=0.398 Sum_probs=34.9
Q ss_pred cceEEEEECCHHHHHHHHHc--CcccCCcEEEEeecCCCCC
Q 032483 11 RGIGFITFASADSVENLMVD--THELGGSTVVVDRATPKED 49 (139)
Q Consensus 11 rG~gFV~F~~~~~a~~Ai~~--~~~i~gr~i~v~~~~~~~~ 49 (139)
||||||+|.+.++|++||+. +..++|++|.|+++.++..
T Consensus 42 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 82 (90)
T 2dnq_A 42 KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNKSK 82 (90)
T ss_dssp TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSCCCC
T ss_pred CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCCCCC
Confidence 79999999999999999984 6789999999999887644
No 322
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.75 E-value=1.3e-08 Score=63.97 Aligned_cols=42 Identities=21% Similarity=0.230 Sum_probs=38.9
Q ss_pred CCCCceeEEeCCCCC-CCHHHHHHHHhcCcceeEEEEeccCCC
Q 032483 98 QRIGKKIFVGRLPQE-ATAEDLRRYFSRFGRILDVYVPKVRQH 139 (139)
Q Consensus 98 ~~~~~~lfV~nL~~~-~t~~~L~~~F~~fG~v~~~~i~~d~~~ 139 (139)
..++.-|||+||++. +++++|+++|++||+|.+|.+++|..|
T Consensus 15 ~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~t 57 (121)
T 1owx_A 15 EKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAKE 57 (121)
T ss_dssp CCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCSE
T ss_pred ccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCE
Confidence 566899999999999 999999999999999999999998753
No 323
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.74 E-value=1.9e-08 Score=61.07 Aligned_cols=38 Identities=24% Similarity=0.334 Sum_probs=32.1
Q ss_pred CCCCceeEEeCCCCCCCHHHHHHHHhcCcceeEEEEeccCC
Q 032483 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKVRQ 138 (139)
Q Consensus 98 ~~~~~~lfV~nL~~~~t~~~L~~~F~~fG~v~~~~i~~d~~ 138 (139)
....++|||+|||+++++++|+++|+.|+ .|.+++|+.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~ 49 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRE 49 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSS
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCC
Confidence 45578999999999999999999999884 566777653
No 324
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.74 E-value=1e-08 Score=62.04 Aligned_cols=41 Identities=24% Similarity=0.346 Sum_probs=36.1
Q ss_pred CccceEEEEECCHHHHHHHHHc--CcccCCcEEEEeecCCCCC
Q 032483 9 AHRGIGFITFASADSVENLMVD--THELGGSTVVVDRATPKED 49 (139)
Q Consensus 9 ~srG~gFV~F~~~~~a~~Ai~~--~~~i~gr~i~v~~~~~~~~ 49 (139)
++||||||+|.+.++|++||+. ++.|+|++|.|.++.++..
T Consensus 49 ~~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~~ 91 (99)
T 2cpj_A 49 KDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHSAS 91 (99)
T ss_dssp TTTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCCSC
T ss_pred cCCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCCCCC
Confidence 4689999999999999999984 6889999999999987643
No 325
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=98.72 E-value=8.4e-09 Score=72.22 Aligned_cols=40 Identities=23% Similarity=0.404 Sum_probs=36.2
Q ss_pred CCCCceeEEeCCCCCC---------CHHHHHHHHhcCcceeEEEEeccC
Q 032483 98 QRIGKKIFVGRLPQEA---------TAEDLRRYFSRFGRILDVYVPKVR 137 (139)
Q Consensus 98 ~~~~~~lfV~nL~~~~---------t~~~L~~~F~~fG~v~~~~i~~d~ 137 (139)
....++|||+||+..+ ++++|+++|++||+|++|+|+.++
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~k 179 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVESK 179 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGGG
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECCC
Confidence 4557899999999998 799999999999999999998764
No 326
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.71 E-value=1.3e-08 Score=61.02 Aligned_cols=45 Identities=20% Similarity=0.323 Sum_probs=37.8
Q ss_pred CCCCCCCCccceEEEEECCHHHHHHHHH-cCcccCCcEEEEeecCCCCC
Q 032483 2 PKDQGSKAHRGIGFITFASADSVENLMV-DTHELGGSTVVVDRATPKED 49 (139)
Q Consensus 2 ~~d~~tg~srG~gFV~F~~~~~a~~Ai~-~~~~i~gr~i~v~~~~~~~~ 49 (139)
+.|+.+|+ ||||+|.+.++|++||+ +++.|+|+.|.|+++.++..
T Consensus 39 ~~~~~~g~---~afV~f~~~~~a~~ai~l~g~~~~g~~l~V~~a~~~~~ 84 (94)
T 2e5g_A 39 VMDKDKGV---FAIVEMGDVGAREAVLSQSQHSLGGHRLRVRPREQKEF 84 (94)
T ss_dssp EECSSSCC---EEEEEESSHHHHHHHHTCSCCEETTEECCCBCSCCSCC
T ss_pred EEcCCCCc---EEEEEECCHHHHHHHHhcCCeEECCEEEEEEECCcCCC
Confidence 45667776 99999999999999999 45889999999998876543
No 327
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=98.70 E-value=2.5e-08 Score=60.26 Aligned_cols=38 Identities=18% Similarity=0.397 Sum_probs=34.2
Q ss_pred ccceEEEEECCHHHHHHHHHc--CcccCCcEEEEeecCCC
Q 032483 10 HRGIGFITFASADSVENLMVD--THELGGSTVVVDRATPK 47 (139)
Q Consensus 10 srG~gFV~F~~~~~a~~Ai~~--~~~i~gr~i~v~~~~~~ 47 (139)
+||||||+|.+.++|++|++. +..++|+.|.|.++.++
T Consensus 56 ~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 95 (97)
T 2xnq_A 56 KNAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSSSN 95 (97)
T ss_dssp CSSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECCCC
T ss_pred eCCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecCCC
Confidence 489999999999999999994 67899999999998654
No 328
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=98.69 E-value=1.3e-08 Score=60.38 Aligned_cols=34 Identities=21% Similarity=0.433 Sum_probs=31.6
Q ss_pred CCceeEEeCCCCCCCHHHHHHHHhcCcceeEEEEe
Q 032483 100 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP 134 (139)
Q Consensus 100 ~~~~lfV~nL~~~~t~~~L~~~F~~fG~v~~~~i~ 134 (139)
..++|||+|||+++++++|+++|++| .|.+|.|.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~ 37 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD 37 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe
Confidence 36799999999999999999999999 99999885
No 329
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.69 E-value=5.8e-08 Score=57.88 Aligned_cols=39 Identities=18% Similarity=0.336 Sum_probs=34.8
Q ss_pred cceEEEEECCHHHHHHHHH--cCcccCCcEEEEeecCCCCC
Q 032483 11 RGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKED 49 (139)
Q Consensus 11 rG~gFV~F~~~~~a~~Ai~--~~~~i~gr~i~v~~~~~~~~ 49 (139)
++||||+|.+.++|++||. +++.++|+.|.|+++.++..
T Consensus 44 ~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 84 (92)
T 2dgt_A 44 KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLR 84 (92)
T ss_dssp SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSCCCS
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccCCCC
Confidence 6799999999999999998 46889999999999987643
No 330
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=98.69 E-value=2.4e-09 Score=69.13 Aligned_cols=33 Identities=21% Similarity=0.378 Sum_probs=30.2
Q ss_pred CCCceeEEeCCCCCCCHHHHHHHHhcCcceeEE
Q 032483 99 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDV 131 (139)
Q Consensus 99 ~~~~~lfV~nL~~~~t~~~L~~~F~~fG~v~~~ 131 (139)
.+.++|||+|||+.+|+++|+++|++||.|..|
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~ 75 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSE 75 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccc
Confidence 446899999999999999999999999998774
No 331
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=98.67 E-value=2.4e-08 Score=61.59 Aligned_cols=38 Identities=18% Similarity=0.444 Sum_probs=34.4
Q ss_pred ccceEEEEECCHHHHHHHHH--cCcccCCcEEEEeecCCC
Q 032483 10 HRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPK 47 (139)
Q Consensus 10 srG~gFV~F~~~~~a~~Ai~--~~~~i~gr~i~v~~~~~~ 47 (139)
++|||||+|.+.++|++||+ ++..|+|+.|.|.++.+.
T Consensus 61 ~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 100 (110)
T 1wf1_A 61 HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGEP 100 (110)
T ss_dssp ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCCC
T ss_pred eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCC
Confidence 68999999999999999997 468899999999998754
No 332
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.67 E-value=2.6e-08 Score=59.77 Aligned_cols=38 Identities=16% Similarity=0.285 Sum_probs=34.7
Q ss_pred ceEEEEECCHHHHHHHHHc--CcccCCcEEEEeecCCCCC
Q 032483 12 GIGFITFASADSVENLMVD--THELGGSTVVVDRATPKED 49 (139)
Q Consensus 12 G~gFV~F~~~~~a~~Ai~~--~~~i~gr~i~v~~~~~~~~ 49 (139)
|||||.|.+.++|++|+++ +..+.||+|.|.+|..+.+
T Consensus 47 G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A~~~sd 86 (96)
T 2diu_A 47 CSAILRFINQDSAERAQKRMENEDVFGNRIIVSFTPKNRE 86 (96)
T ss_dssp TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESSCCSCC
T ss_pred CEEEEEECCHHHHHHHHHHhcCCccCCceEEEEecCCCcc
Confidence 9999999999999999994 6899999999999977644
No 333
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=98.66 E-value=1.4e-08 Score=61.22 Aligned_cols=40 Identities=18% Similarity=0.344 Sum_probs=35.3
Q ss_pred ccceEEEEECCHHHHHHHHHc--CcccCCcEEEEeecCCCCC
Q 032483 10 HRGIGFITFASADSVENLMVD--THELGGSTVVVDRATPKED 49 (139)
Q Consensus 10 srG~gFV~F~~~~~a~~Ai~~--~~~i~gr~i~v~~~~~~~~ 49 (139)
+||||||+|.+.++|++||+. +..+.|++|.|.++.++..
T Consensus 44 ~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~ 85 (96)
T 2kvi_A 44 KNAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSSNAR 85 (96)
T ss_dssp ETTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEECCCC
T ss_pred eCCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCcCCC
Confidence 489999999999999999994 6789999999999876543
No 334
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.66 E-value=1.8e-08 Score=62.56 Aligned_cols=31 Identities=26% Similarity=0.407 Sum_probs=28.7
Q ss_pred CCCceeEEeCCCCCCCHHHHHHHHhcCccee
Q 032483 99 RIGKKIFVGRLPQEATAEDLRRYFSRFGRIL 129 (139)
Q Consensus 99 ~~~~~lfV~nL~~~~t~~~L~~~F~~fG~v~ 129 (139)
...++|||+|||+++|+++|+++|++||.|.
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~ 53 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKK 53 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcc
Confidence 4578999999999999999999999999994
No 335
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=98.66 E-value=2e-08 Score=60.32 Aligned_cols=34 Identities=21% Similarity=0.270 Sum_probs=30.8
Q ss_pred CCCCceeEEeCCCCCCCHHHHHHHHhcCcceeEE
Q 032483 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDV 131 (139)
Q Consensus 98 ~~~~~~lfV~nL~~~~t~~~L~~~F~~fG~v~~~ 131 (139)
....++|||+|||+.+++++|+++|++||.|..+
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~ 46 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV 46 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe
Confidence 3457899999999999999999999999999776
No 336
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=98.65 E-value=2.8e-08 Score=58.48 Aligned_cols=36 Identities=22% Similarity=0.448 Sum_probs=31.5
Q ss_pred CCccceEEEEECCHHHHHHHHH-cCcccCCcEEEEee
Q 032483 8 KAHRGIGFITFASADSVENLMV-DTHELGGSTVVVDR 43 (139)
Q Consensus 8 g~srG~gFV~F~~~~~a~~Ai~-~~~~i~gr~i~v~~ 43 (139)
.++||||||+|.+.++|++|+. ++..++|+.|.|++
T Consensus 50 ~~~kg~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~r 86 (87)
T 2hzc_A 50 NQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRR 86 (87)
T ss_dssp CSSSSEEEEEESSHHHHHHHGGGTTCEETTEECEEEC
T ss_pred cCCCcEEEEEcCCHHHHHHHHhcCCCEECCeEEEEeC
Confidence 3569999999999999999994 36889999999975
No 337
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.65 E-value=5.7e-08 Score=57.68 Aligned_cols=38 Identities=13% Similarity=0.320 Sum_probs=34.2
Q ss_pred cceEEEEECCHHHHHHHHHc--CcccCCcEEEEeecCCCC
Q 032483 11 RGIGFITFASADSVENLMVD--THELGGSTVVVDRATPKE 48 (139)
Q Consensus 11 rG~gFV~F~~~~~a~~Ai~~--~~~i~gr~i~v~~~~~~~ 48 (139)
+|||||+|.+.++|++||+. +..++|+.|.|.++.++.
T Consensus 43 ~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 82 (90)
T 2dnp_A 43 KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKGQ 82 (90)
T ss_dssp SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCCCC
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCCCC
Confidence 67999999999999999994 688999999999997763
No 338
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.65 E-value=3.1e-08 Score=59.45 Aligned_cols=43 Identities=16% Similarity=0.157 Sum_probs=36.5
Q ss_pred CCCCCCCCccceEEEEECCHHHHHHHHHc--CcccCCcEEEEeecCCCC
Q 032483 2 PKDQGSKAHRGIGFITFASADSVENLMVD--THELGGSTVVVDRATPKE 48 (139)
Q Consensus 2 ~~d~~tg~srG~gFV~F~~~~~a~~Ai~~--~~~i~gr~i~v~~~~~~~ 48 (139)
++|+.+|+ |||+|.+.++|++||.. +..|+|++|.|+++.+++
T Consensus 49 ~~~~~~~~----afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~ 93 (96)
T 2e44_A 49 NTDSETAV----VNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPDEM 93 (96)
T ss_dssp CCSSSSEE----EEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCCCC
T ss_pred ecCCCCCE----EEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCccc
Confidence 45655544 99999999999999984 689999999999998874
No 339
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.65 E-value=7.1e-08 Score=59.30 Aligned_cols=38 Identities=13% Similarity=0.333 Sum_probs=33.9
Q ss_pred ceEEEEECCHHHHHHHHHc--CcccCC-----cEEEEeecCCCCC
Q 032483 12 GIGFITFASADSVENLMVD--THELGG-----STVVVDRATPKED 49 (139)
Q Consensus 12 G~gFV~F~~~~~a~~Ai~~--~~~i~g-----r~i~v~~~~~~~~ 49 (139)
|||||+|.+.++|++||+. +..|+| +.|.|+++.++..
T Consensus 51 g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~a~~~~~ 95 (108)
T 1x4c_A 51 GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDGPRSP 95 (108)
T ss_dssp TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEESSCCSC
T ss_pred CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEeCCCCCC
Confidence 9999999999999999994 578888 9999999987643
No 340
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.64 E-value=4.3e-08 Score=59.05 Aligned_cols=38 Identities=21% Similarity=0.328 Sum_probs=34.4
Q ss_pred cceEEEEECCHHHHHHHHHc--CcccC--CcEEEEeecCCCC
Q 032483 11 RGIGFITFASADSVENLMVD--THELG--GSTVVVDRATPKE 48 (139)
Q Consensus 11 rG~gFV~F~~~~~a~~Ai~~--~~~i~--gr~i~v~~~~~~~ 48 (139)
||||||+|.+.++|++||+. ...++ |++|.|.++.++.
T Consensus 53 ~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~~~~ 94 (97)
T 1why_A 53 DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAKSGP 94 (97)
T ss_dssp SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECCCCC
T ss_pred CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECCCCC
Confidence 89999999999999999994 67888 9999999998763
No 341
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.64 E-value=3.1e-08 Score=62.26 Aligned_cols=40 Identities=18% Similarity=0.287 Sum_probs=34.9
Q ss_pred ccceEEEEECCHHHHHHHHHc----CcccCCcEEEEeecCCCCC
Q 032483 10 HRGIGFITFASADSVENLMVD----THELGGSTVVVDRATPKED 49 (139)
Q Consensus 10 srG~gFV~F~~~~~a~~Ai~~----~~~i~gr~i~v~~~~~~~~ 49 (139)
.||||||+|.+.++|++||+. +..|+|++|.|.++.++..
T Consensus 66 ~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~k~~ 109 (119)
T 2ad9_A 66 GKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKEL 109 (119)
T ss_dssp GGTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEECSSSSC
T ss_pred CCCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEccCCCC
Confidence 489999999999999999983 3679999999999977643
No 342
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.63 E-value=3.2e-08 Score=58.06 Aligned_cols=35 Identities=20% Similarity=0.271 Sum_probs=31.9
Q ss_pred ccceEEEEECCHHHHHHHHHc---CcccCCcEEEEeec
Q 032483 10 HRGIGFITFASADSVENLMVD---THELGGSTVVVDRA 44 (139)
Q Consensus 10 srG~gFV~F~~~~~a~~Ai~~---~~~i~gr~i~v~~~ 44 (139)
+||||||+|.+.++|++|++. +..++|++|.|+++
T Consensus 47 ~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~a 84 (85)
T 2ytc_A 47 RQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWG 84 (85)
T ss_dssp GGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEEC
T ss_pred CCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEec
Confidence 689999999999999999984 47899999999886
No 343
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=98.63 E-value=3.4e-08 Score=60.90 Aligned_cols=38 Identities=16% Similarity=0.295 Sum_probs=34.4
Q ss_pred cceEEEEECCHHHHHHHHH--cCcccCCcEEEEeecCCCC
Q 032483 11 RGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKE 48 (139)
Q Consensus 11 rG~gFV~F~~~~~a~~Ai~--~~~~i~gr~i~v~~~~~~~ 48 (139)
||||||+|.+.++|++|+. ++..++|+.|.|.++.++.
T Consensus 65 kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 104 (108)
T 2jvo_A 65 NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKLPA 104 (108)
T ss_dssp TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSCCC
T ss_pred CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCCC
Confidence 7999999999999999998 4788999999999987653
No 344
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=98.62 E-value=4.4e-08 Score=63.63 Aligned_cols=38 Identities=21% Similarity=0.386 Sum_probs=35.0
Q ss_pred ccceEEEEECCHHHHHHHHH--cCcccCCcEEEEeecCCC
Q 032483 10 HRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPK 47 (139)
Q Consensus 10 srG~gFV~F~~~~~a~~Ai~--~~~~i~gr~i~v~~~~~~ 47 (139)
+||||||+|.+.++|++||. ++..|+|++|.|.++.++
T Consensus 109 ~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 148 (150)
T 2i2y_A 109 PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGE 148 (150)
T ss_dssp SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCC
T ss_pred CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCC
Confidence 79999999999999999998 468899999999998765
No 345
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.61 E-value=3.2e-08 Score=61.75 Aligned_cols=36 Identities=8% Similarity=0.107 Sum_probs=33.3
Q ss_pred ccceEEEEECCHHHHHHHHHc--CcccCCcEEEEeecC
Q 032483 10 HRGIGFITFASADSVENLMVD--THELGGSTVVVDRAT 45 (139)
Q Consensus 10 srG~gFV~F~~~~~a~~Ai~~--~~~i~gr~i~v~~~~ 45 (139)
++|||||+|.+.++|++|+.. +..++||.|.|.++.
T Consensus 54 ~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~i~v~~~~ 91 (114)
T 3s6e_A 54 AQGNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYVP 91 (114)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEEc
Confidence 699999999999999999994 789999999999874
No 346
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.59 E-value=4.5e-08 Score=60.59 Aligned_cols=39 Identities=5% Similarity=-0.003 Sum_probs=34.8
Q ss_pred CccceEEEEECCHHHHHHHHHc--CcccCCcEEEEeecCCC
Q 032483 9 AHRGIGFITFASADSVENLMVD--THELGGSTVVVDRATPK 47 (139)
Q Consensus 9 ~srG~gFV~F~~~~~a~~Ai~~--~~~i~gr~i~v~~~~~~ 47 (139)
++||||||+|.+.++|++||.. +..++|+.|.|.++...
T Consensus 44 ~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 84 (111)
T 1whx_A 44 EGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIG 84 (111)
T ss_dssp SSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETT
T ss_pred CCCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 4889999999999999999994 68899999999998643
No 347
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=98.59 E-value=8.5e-08 Score=68.12 Aligned_cols=39 Identities=31% Similarity=0.675 Sum_probs=35.0
Q ss_pred CCCCceeEEeCCCCCCCHHHHH----HHHhcCcceeEEEEecc
Q 032483 98 QRIGKKIFVGRLPQEATAEDLR----RYFSRFGRILDVYVPKV 136 (139)
Q Consensus 98 ~~~~~~lfV~nL~~~~t~~~L~----~~F~~fG~v~~~~i~~d 136 (139)
....++|||+|||+++++++|+ ++|++||.|.+|.|+++
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~ 48 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRS 48 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCC
Confidence 3457899999999999999977 89999999999998864
No 348
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.55 E-value=1.2e-07 Score=56.95 Aligned_cols=30 Identities=27% Similarity=0.559 Sum_probs=26.2
Q ss_pred ceeEEeCCCCCCCHHH----HHHHHhcC-cceeEE
Q 032483 102 KKIFVGRLPQEATAED----LRRYFSRF-GRILDV 131 (139)
Q Consensus 102 ~~lfV~nL~~~~t~~~----L~~~F~~f-G~v~~~ 131 (139)
+.|||+|||+.+++++ |+++|++| |+|.+|
T Consensus 10 T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V 44 (96)
T 2diu_A 10 TLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI 44 (96)
T ss_dssp EEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC
T ss_pred eEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE
Confidence 4499999999999988 55899999 599886
No 349
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=98.55 E-value=1.3e-07 Score=62.51 Aligned_cols=42 Identities=12% Similarity=0.133 Sum_probs=35.9
Q ss_pred CCccceEEEEECCHHHHHHHHHc--CcccCC--cEEEEeecCCCCC
Q 032483 8 KAHRGIGFITFASADSVENLMVD--THELGG--STVVVDRATPKED 49 (139)
Q Consensus 8 g~srG~gFV~F~~~~~a~~Ai~~--~~~i~g--r~i~v~~~~~~~~ 49 (139)
++++|||||+|.+.++|++|++. +..|.| ++|.|.++.++..
T Consensus 81 k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~~~l 126 (164)
T 1sjr_A 81 KNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTSL 126 (164)
T ss_dssp SSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSSSSC
T ss_pred CCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecCCcc
Confidence 34789999999999999999994 678855 9999999987643
No 350
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=98.51 E-value=9.8e-08 Score=70.11 Aligned_cols=40 Identities=13% Similarity=0.237 Sum_probs=34.8
Q ss_pred CCCCceeEEeC--CCCCCCHHHHHHHHhcCcceeEEEEeccC
Q 032483 98 QRIGKKIFVGR--LPQEATAEDLRRYFSRFGRILDVYVPKVR 137 (139)
Q Consensus 98 ~~~~~~lfV~n--L~~~~t~~~L~~~F~~fG~v~~~~i~~d~ 137 (139)
..++.+|||+| |++.+||++|+++|++||+|.+|.+..++
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~~k 56 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNK 56 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCTTC
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeCCC
Confidence 45578999999 68899999999999999999999886543
No 351
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.49 E-value=2e-07 Score=58.05 Aligned_cols=38 Identities=11% Similarity=0.201 Sum_probs=32.3
Q ss_pred ccceEEEEECCHHHHHHHHHc--Cccc-----CCcEEEEeecCCC
Q 032483 10 HRGIGFITFASADSVENLMVD--THEL-----GGSTVVVDRATPK 47 (139)
Q Consensus 10 srG~gFV~F~~~~~a~~Ai~~--~~~i-----~gr~i~v~~~~~~ 47 (139)
+||||||+|.+.++|++|++. +.++ .|++|.|.++...
T Consensus 62 ~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v~~a~~~ 106 (114)
T 2cq2_A 62 NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFVEKV 106 (114)
T ss_dssp TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEEESCC
T ss_pred CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEEEecccC
Confidence 489999999999999999995 5666 6899999988643
No 352
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=98.48 E-value=1.4e-07 Score=59.37 Aligned_cols=36 Identities=33% Similarity=0.481 Sum_probs=31.9
Q ss_pred CCCceeEEeCCCCCCCHHHHHHHHhcCcceeEEEEecc
Q 032483 99 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKV 136 (139)
Q Consensus 99 ~~~~~lfV~nL~~~~t~~~L~~~F~~fG~v~~~~i~~d 136 (139)
...++|||+|| ++++++|+++|++||.|.+|.|...
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~~~ 72 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPP 72 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEETT
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEeCC
Confidence 45789999996 6999999999999999999998743
No 353
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.46 E-value=1.7e-07 Score=64.52 Aligned_cols=42 Identities=14% Similarity=0.152 Sum_probs=37.5
Q ss_pred CCCCCCccceEEEEECCHHHHHHHHHc--CcccCCcEEEEeecC
Q 032483 4 DQGSKAHRGIGFITFASADSVENLMVD--THELGGSTVVVDRAT 45 (139)
Q Consensus 4 d~~tg~srG~gFV~F~~~~~a~~Ai~~--~~~i~gr~i~v~~~~ 45 (139)
+..+++++||+||+|.+.++|++||.. +..++||.|.+.+..
T Consensus 168 ~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 168 EEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp SSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred cccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 356789999999999999999999994 789999999999864
No 354
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=98.37 E-value=4.8e-07 Score=57.61 Aligned_cols=40 Identities=10% Similarity=0.194 Sum_probs=34.6
Q ss_pred Cccce-EEEEECCHHHHHHHHHc--CcccCC--cEEEEeecCCCC
Q 032483 9 AHRGI-GFITFASADSVENLMVD--THELGG--STVVVDRATPKE 48 (139)
Q Consensus 9 ~srG~-gFV~F~~~~~a~~Ai~~--~~~i~g--r~i~v~~~~~~~ 48 (139)
++||| |||+|.+.++|++|++. +..|.| +.|+|.++.++.
T Consensus 63 ~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~~~ 107 (130)
T 3zzy_A 63 KNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTS 107 (130)
T ss_dssp ETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSCSS
T ss_pred CCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCCCc
Confidence 35788 99999999999999994 788888 899999987764
No 355
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=98.36 E-value=3.9e-07 Score=56.65 Aligned_cols=36 Identities=14% Similarity=0.361 Sum_probs=29.9
Q ss_pred ceEEEEECCHHHHHHHHHc--CcccCCcE-----EEEeecCCC
Q 032483 12 GIGFITFASADSVENLMVD--THELGGST-----VVVDRATPK 47 (139)
Q Consensus 12 G~gFV~F~~~~~a~~Ai~~--~~~i~gr~-----i~v~~~~~~ 47 (139)
|||||+|.+.++|++||+. +..|+|+. |.|+.+.++
T Consensus 52 g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~~~~~~ 94 (115)
T 3beg_B 52 GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDGPR 94 (115)
T ss_dssp SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEEECC--
T ss_pred CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEeccCCCC
Confidence 9999999999999999994 68899988 777666553
No 356
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=98.31 E-value=1.3e-06 Score=53.51 Aligned_cols=40 Identities=8% Similarity=0.169 Sum_probs=33.4
Q ss_pred CCCceeEEeCCCC-----CCCHHHHHHHHhcCcceeEEEEeccCC
Q 032483 99 RIGKKIFVGRLPQ-----EATAEDLRRYFSRFGRILDVYVPKVRQ 138 (139)
Q Consensus 99 ~~~~~lfV~nL~~-----~~t~~~L~~~F~~fG~v~~~~i~~d~~ 138 (139)
.++++|+|.||.. +-++++|+++|++||.|.+|.|++|++
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~ 50 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPG 50 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSS
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCC
Confidence 4478999999973 237899999999999999999999864
No 357
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=98.30 E-value=5.2e-07 Score=63.14 Aligned_cols=40 Identities=20% Similarity=0.331 Sum_probs=33.1
Q ss_pred CccceEEEEECCHHHHHHHHHc--Cccc------------CCcEEEEeecCCCC
Q 032483 9 AHRGIGFITFASADSVENLMVD--THEL------------GGSTVVVDRATPKE 48 (139)
Q Consensus 9 ~srG~gFV~F~~~~~a~~Ai~~--~~~i------------~gr~i~v~~~~~~~ 48 (139)
.+||||||+|.+.++|+.|+++ +..| +|+.|.|++|..+.
T Consensus 177 ~~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~~~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 177 ESKNCGFVKFKYQANAEFAKEAMSNQTLLLPSDKEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp GGGTEEEEEESSHHHHHHHHHHHTTCCCCCTTSTTGGGGGGSCCCEEEECC---
T ss_pred CCCCEEEEEeCCHHHHHHHHHHhCCCEEeccccccccccCCCCEEEEEEccCCC
Confidence 4699999999999999999985 4666 89999999997653
No 358
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.26 E-value=1.5e-06 Score=54.84 Aligned_cols=38 Identities=18% Similarity=0.300 Sum_probs=33.0
Q ss_pred ce-EEEEECCHHHHHHHHHc--CcccCC--cEEEEeecCCCCC
Q 032483 12 GI-GFITFASADSVENLMVD--THELGG--STVVVDRATPKED 49 (139)
Q Consensus 12 G~-gFV~F~~~~~a~~Ai~~--~~~i~g--r~i~v~~~~~~~~ 49 (139)
|| |||+|.+.++|++|++. +..|.| ++|.|.++.++..
T Consensus 62 Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~~l 104 (124)
T 2e5i_A 62 GIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTRL 104 (124)
T ss_dssp SEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCSCC
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCCcc
Confidence 86 99999999999999994 688887 6999999987643
No 359
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=98.21 E-value=6.5e-07 Score=58.22 Aligned_cols=30 Identities=33% Similarity=0.552 Sum_probs=27.2
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHHc
Q 032483 1 MPKDQGSKAHRGIGFITFASADSVENLMVD 30 (139)
Q Consensus 1 i~~d~~tg~srG~gFV~F~~~~~a~~Ai~~ 30 (139)
|++|+.+|+++|||||+|.+.++|.+|+..
T Consensus 119 i~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 148 (166)
T 3md3_A 119 VMWDMQTGSSRGYGFVSFTSQDDAQNAMDS 148 (166)
T ss_dssp EEECTTTCCEEEEEEEEESCHHHHHHHHHH
T ss_pred EEecCCCCCcceEEEEEeCCHHHHHHHHHH
Confidence 356789999999999999999999999984
No 360
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=98.15 E-value=1.3e-06 Score=58.73 Aligned_cols=39 Identities=21% Similarity=0.429 Sum_probs=34.4
Q ss_pred CccceEEEEECCHHHHHHHHHc--CcccC-CcEEEEeecCCC
Q 032483 9 AHRGIGFITFASADSVENLMVD--THELG-GSTVVVDRATPK 47 (139)
Q Consensus 9 ~srG~gFV~F~~~~~a~~Ai~~--~~~i~-gr~i~v~~~~~~ 47 (139)
.++|||||+|.+.++|.+|+.. +..++ |++|.|.++.++
T Consensus 156 ~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 156 KDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp TTSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred CCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 3589999999999999999994 67888 999999998754
No 361
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=98.14 E-value=6.9e-07 Score=58.59 Aligned_cols=30 Identities=13% Similarity=0.385 Sum_probs=27.2
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHHc
Q 032483 1 MPKDQGSKAHRGIGFITFASADSVENLMVD 30 (139)
Q Consensus 1 i~~d~~tg~srG~gFV~F~~~~~a~~Ai~~ 30 (139)
|++|+.+|+++|||||+|.+.++|++|++.
T Consensus 126 i~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 155 (172)
T 2g4b_A 126 LVKDSATGLSKGYAFCEYVDINVTDQAIAG 155 (172)
T ss_dssp EEECTTTCSEEEEEEEEESSTTHHHHHHHH
T ss_pred EEecCCCCCcceEEEEEeCCHHHHHHHHHH
Confidence 356788999999999999999999999984
No 362
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.08 E-value=8.6e-06 Score=50.18 Aligned_cols=39 Identities=26% Similarity=0.364 Sum_probs=31.0
Q ss_pred CCCCceeEEeCCCCCCC-----------HHHHHHHHhcCcceeEEEEeccC
Q 032483 98 QRIGKKIFVGRLPQEAT-----------AEDLRRYFSRFGRILDVYVPKVR 137 (139)
Q Consensus 98 ~~~~~~lfV~nL~~~~t-----------~~~L~~~F~~fG~v~~~~i~~d~ 137 (139)
..++++|+|.||....+ +++|+++|++||.|.+|.| .|+
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~ 61 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR 61 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC
Confidence 45578999999954432 5899999999999999965 554
No 363
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.07 E-value=5.3e-06 Score=49.29 Aligned_cols=37 Identities=22% Similarity=0.334 Sum_probs=32.6
Q ss_pred ceEEEEECCHHHHHHHHH-cCcccCCcEEEEeecCCCC
Q 032483 12 GIGFITFASADSVENLMV-DTHELGGSTVVVDRATPKE 48 (139)
Q Consensus 12 G~gFV~F~~~~~a~~Ai~-~~~~i~gr~i~v~~~~~~~ 48 (139)
+.+||+|.+.++|.+||+ ++..+.||.|+|+.+.+..
T Consensus 50 d~~fVtF~d~~sAlaAi~mnG~~v~Gr~LkV~lkt~dW 87 (91)
T 2dnr_A 50 DKMWVTFLEGSSALNVLSLNGKELLNRTITIALKSPSG 87 (91)
T ss_dssp SSEEEEESSHHHHHHGGGGTTCEETTEEEEEEECCCSS
T ss_pred CCEEEEECChHHHHHHHhcCCeEeCCeEEEEEeCCCCc
Confidence 348999999999999999 5689999999999987653
No 364
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=98.07 E-value=1.8e-06 Score=56.15 Aligned_cols=35 Identities=31% Similarity=0.464 Sum_probs=29.4
Q ss_pred CCCCCCCCccceEEEEECCHHHHHHHHHcCcccCCcEE
Q 032483 2 PKDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTV 39 (139)
Q Consensus 2 ~~d~~tg~srG~gFV~F~~~~~a~~Ai~~~~~i~gr~i 39 (139)
++|+.+|+++|||||+|.+.++|.+|++. ++|+.+
T Consensus 121 ~~~~~~g~~~g~afV~f~~~~~A~~A~~~---l~g~~~ 155 (167)
T 1fxl_A 121 LVDQVTGVSRGVGFIRFDKRIEAEEAIKG---LNGQKP 155 (167)
T ss_dssp EECTTTCCEEEEEEEEESSHHHHHHHHHH---HTTCCC
T ss_pred EecCCCCCccceEEEEeCCHHHHHHHHHH---hcCCcc
Confidence 56778999999999999999999999964 556543
No 365
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=98.03 E-value=2.4e-06 Score=55.72 Aligned_cols=36 Identities=14% Similarity=0.367 Sum_probs=29.8
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHHcCcccCCcEE
Q 032483 1 MPKDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTV 39 (139)
Q Consensus 1 i~~d~~tg~srG~gFV~F~~~~~a~~Ai~~~~~i~gr~i 39 (139)
|++|+.+|+++|||||+|.+.++|.+|++. ++|+.+
T Consensus 121 i~~~~~~~~~~g~afV~f~~~~~A~~A~~~---l~g~~~ 156 (168)
T 1b7f_A 121 ILRDKLTGRPRGVAFVRYNKREEAQEAISA---LNNVIP 156 (168)
T ss_dssp EEECTTTCCEEEEEEEEESSHHHHHHHHHH---HTTCCC
T ss_pred EEEcCCCCCcceEEEEEECCHHHHHHHHHH---hcCCEe
Confidence 356778999999999999999999999954 456543
No 366
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=97.92 E-value=6.1e-06 Score=54.03 Aligned_cols=28 Identities=18% Similarity=0.359 Sum_probs=24.6
Q ss_pred CCCCCCCCccceEEEEECCHHHHHHHHHc
Q 032483 2 PKDQGSKAHRGIGFITFASADSVENLMVD 30 (139)
Q Consensus 2 ~~d~~tg~srG~gFV~F~~~~~a~~Ai~~ 30 (139)
++|+ +|+++|||||+|.+.++|.+|++.
T Consensus 128 ~~~~-~g~~~g~afV~f~~~~~A~~A~~~ 155 (175)
T 3nmr_A 128 LRGP-DGLSRGCAFVTFTTRAMAQTAIKA 155 (175)
T ss_dssp EECT-TSCEEEEEEEEESSHHHHHHHHHH
T ss_pred EECC-CCCEEEEEEEEECCHHHHHHHHHH
Confidence 4564 699999999999999999999974
No 367
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=97.83 E-value=1.7e-05 Score=48.46 Aligned_cols=39 Identities=21% Similarity=0.407 Sum_probs=31.9
Q ss_pred CCceeEEeCC--CCCCC--------HHHHHHHHhcCcceeEEEEeccCC
Q 032483 100 IGKKIFVGRL--PQEAT--------AEDLRRYFSRFGRILDVYVPKVRQ 138 (139)
Q Consensus 100 ~~~~lfV~nL--~~~~t--------~~~L~~~F~~fG~v~~~~i~~d~~ 138 (139)
+++.|.+.|+ |.++. +++|++.|++||+|++|.|++|+.
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~ 52 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVD 52 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBT
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCC
Confidence 4678999998 33443 368999999999999999998864
No 368
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=97.82 E-value=1.9e-05 Score=49.29 Aligned_cols=39 Identities=10% Similarity=0.227 Sum_probs=32.3
Q ss_pred CCceeEEeCCCC--CC---CHHHHHHHHhcCcceeEEEEeccCC
Q 032483 100 IGKKIFVGRLPQ--EA---TAEDLRRYFSRFGRILDVYVPKVRQ 138 (139)
Q Consensus 100 ~~~~lfV~nL~~--~~---t~~~L~~~F~~fG~v~~~~i~~d~~ 138 (139)
++++|++.|+-. ++ -+++|++.|++||+|.+|.|++|+.
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~ 62 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQ 62 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCC
Confidence 478999999942 22 2689999999999999999999863
No 369
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=97.81 E-value=1.5e-05 Score=54.37 Aligned_cols=30 Identities=7% Similarity=0.114 Sum_probs=24.6
Q ss_pred CCccceEEEEECCHHHHHHHHHc--CcccCCc
Q 032483 8 KAHRGIGFITFASADSVENLMVD--THELGGS 37 (139)
Q Consensus 8 g~srG~gFV~F~~~~~a~~Ai~~--~~~i~gr 37 (139)
+.++|||||+|.+.++|.+||.. +..|+|+
T Consensus 162 ~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~ 193 (205)
T 3tyt_A 162 SERSSSGLLEWDSKSDALETLGFLNHYQMKNP 193 (205)
T ss_dssp SSSSEEEEEECSSHHHHHHHHHHHTTCEECCS
T ss_pred CCCceEEEEEeCCHHHHHHHHHHhCCCCccCC
Confidence 56779999999999999999984 4555554
No 370
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.71 E-value=3.7e-05 Score=45.89 Aligned_cols=32 Identities=22% Similarity=0.365 Sum_probs=29.1
Q ss_pred EEEEECCHHHHHHHHH-cCcccCCcEEEEeecC
Q 032483 14 GFITFASADSVENLMV-DTHELGGSTVVVDRAT 45 (139)
Q Consensus 14 gFV~F~~~~~a~~Ai~-~~~~i~gr~i~v~~~~ 45 (139)
+||+|.+.++|.+||+ ++..++||.|+|++..
T Consensus 61 ~fVtF~d~~sAl~AI~ldG~~v~Gr~L~V~~k~ 93 (95)
T 1ufw_A 61 MLVTFADSHSALSVLDVDGMKVKGRAVKISGPS 93 (95)
T ss_dssp EEEECSCSHHHHHHHHGGGSEETTEEEEEECCC
T ss_pred EEEEEcChHHHHHHHhcCCeeeCCeEEEEeccC
Confidence 9999999999999999 5789999999998643
No 371
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.61 E-value=0.00023 Score=43.02 Aligned_cols=35 Identities=14% Similarity=0.264 Sum_probs=28.0
Q ss_pred CceeEEeCCC-------CCCCHHHHHHHHhcCcceeEEEEec
Q 032483 101 GKKIFVGRLP-------QEATAEDLRRYFSRFGRILDVYVPK 135 (139)
Q Consensus 101 ~~~lfV~nL~-------~~~t~~~L~~~F~~fG~v~~~~i~~ 135 (139)
..+|-|.-.. ..+++++|+++|++||.|.+|.|+.
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~~ 51 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLSS 51 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEES
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEcc
Confidence 3466665443 4589999999999999999999974
No 372
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=97.59 E-value=6.6e-05 Score=55.15 Aligned_cols=35 Identities=14% Similarity=0.301 Sum_probs=27.1
Q ss_pred ccceEEEEECCHHHHHHHHHc--Cccc---CCc--EEEEeec
Q 032483 10 HRGIGFITFASADSVENLMVD--THEL---GGS--TVVVDRA 44 (139)
Q Consensus 10 srG~gFV~F~~~~~a~~Ai~~--~~~i---~gr--~i~v~~~ 44 (139)
+||||||+|.+.++|++||++ +.++ .|+ .|.+.++
T Consensus 55 ~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly~~~~ 96 (345)
T 3tht_A 55 NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFV 96 (345)
T ss_dssp TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEEC
T ss_pred CCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEEEEEe
Confidence 689999999999999999995 3433 345 4666665
No 373
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.44 E-value=0.00026 Score=42.84 Aligned_cols=36 Identities=28% Similarity=0.522 Sum_probs=31.7
Q ss_pred ceEEEEECCHHHHHHHHHc-CcccCCcEEEEeecCCC
Q 032483 12 GIGFITFASADSVENLMVD-THELGGSTVVVDRATPK 47 (139)
Q Consensus 12 G~gFV~F~~~~~a~~Ai~~-~~~i~gr~i~v~~~~~~ 47 (139)
+-|+|+|.+.+.|++.|+. .|.|++-+|.|....++
T Consensus 48 ~~AvItF~d~~va~rVL~k~~H~L~~~~LsV~P~~~~ 84 (104)
T 2dhx_A 48 CGGVLTFREPADAERVLAQADHELHGAQLSLRPAPPR 84 (104)
T ss_dssp TEEEEEESSHHHHHHHHTCSCCBSSSSBCEEEECCCC
T ss_pred CcEEEEEcChHHHHHHhcCCcceecCeEEEEEcCCCC
Confidence 4589999999999999997 89999999999865544
No 374
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=97.39 E-value=2.1e-05 Score=47.97 Aligned_cols=34 Identities=9% Similarity=0.227 Sum_probs=28.0
Q ss_pred EEeCCCCCCCHHHHHHHH------------hcCcceeEEEEeccCC
Q 032483 105 FVGRLPQEATAEDLRRYF------------SRFGRILDVYVPKVRQ 138 (139)
Q Consensus 105 fV~nL~~~~t~~~L~~~F------------~~fG~v~~~~i~~d~~ 138 (139)
.+.||++.+++++|+++| ++||+|.+|.|++|+.
T Consensus 19 ~~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~ 64 (104)
T 1jmt_A 19 SADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLG 64 (104)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSS
T ss_pred ccCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCC
Confidence 367899989998888777 9999999999998753
No 375
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.01 E-value=0.00096 Score=39.50 Aligned_cols=37 Identities=16% Similarity=0.349 Sum_probs=30.0
Q ss_pred CceeEEeCCC----CCCCH----HHHHHHHhcCcceeEEEEeccC
Q 032483 101 GKKIFVGRLP----QEATA----EDLRRYFSRFGRILDVYVPKVR 137 (139)
Q Consensus 101 ~~~lfV~nL~----~~~t~----~~L~~~F~~fG~v~~~~i~~d~ 137 (139)
.-+|+|.-++ .++-+ .+|.+.|++||+|..++++.|+
T Consensus 7 d~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~ 51 (91)
T 2dnr_A 7 GGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK 51 (91)
T ss_dssp SCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS
T ss_pred CCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC
Confidence 4688888776 24444 6799999999999999999885
No 376
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=96.72 E-value=0.0032 Score=38.82 Aligned_cols=39 Identities=15% Similarity=0.259 Sum_probs=30.1
Q ss_pred CCCceeEEeCCCCCCC----------HHHHHHHHhcCcceeEEEEeccC
Q 032483 99 RIGKKIFVGRLPQEAT----------AEDLRRYFSRFGRILDVYVPKVR 137 (139)
Q Consensus 99 ~~~~~lfV~nL~~~~t----------~~~L~~~F~~fG~v~~~~i~~d~ 137 (139)
.+++.|.+.|+=..-. +++|++.|++||.|.+|.|.++.
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~ 53 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS 53 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC
Confidence 3467888888854322 35889999999999999998763
No 377
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=96.39 E-value=0.0058 Score=37.39 Aligned_cols=40 Identities=8% Similarity=0.073 Sum_probs=36.6
Q ss_pred CCCceeEEeCCCCCCCHHHHHHHHhcC-----cceeEEEEeccCC
Q 032483 99 RIGKKIFVGRLPQEATAEDLRRYFSRF-----GRILDVYVPKVRQ 138 (139)
Q Consensus 99 ~~~~~lfV~nL~~~~t~~~L~~~F~~f-----G~v~~~~i~~d~~ 138 (139)
...++|-+.|||.++++..++.+.++| |.|+.+.+..|.+
T Consensus 19 ~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~ 63 (117)
T 2l9w_A 19 ELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFN 63 (117)
T ss_dssp TTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTT
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCC
Confidence 346889999999999999999999999 9999999998864
No 378
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=96.35 E-value=0.0086 Score=35.79 Aligned_cols=29 Identities=34% Similarity=0.599 Sum_probs=24.4
Q ss_pred CCCceeEEeCCCCCCCHHHHHHHHhcCcce
Q 032483 99 RIGKKIFVGRLPQEATAEDLRRYFSRFGRI 128 (139)
Q Consensus 99 ~~~~~lfV~nL~~~~t~~~L~~~F~~fG~v 128 (139)
.....+++ +.|.+|...||.++|++||.|
T Consensus 14 ~r~HVf~l-~FP~ewKt~DI~~lFs~fggv 42 (100)
T 1whv_A 14 KRDHVLHV-TFPKEWKTSDLYQLFSAFGNI 42 (100)
T ss_dssp CCCSEEEE-ECCTTCCHHHHHHHHTTTCSC
T ss_pred CCCeEEEE-eCChhhhhHHHHHHhhccCCE
Confidence 33456666 999999999999999999855
No 379
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.26 E-value=0.0016 Score=38.79 Aligned_cols=37 Identities=14% Similarity=0.224 Sum_probs=30.0
Q ss_pred CceeEEeCCCCC-----CCH----HHHHHHHhcCcceeEEEEeccC
Q 032483 101 GKKIFVGRLPQE-----ATA----EDLRRYFSRFGRILDVYVPKVR 137 (139)
Q Consensus 101 ~~~lfV~nL~~~-----~t~----~~L~~~F~~fG~v~~~~i~~d~ 137 (139)
.-+|+|.-++.. +-+ .+|.+.|++||+|..++++.|+
T Consensus 15 D~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~ 60 (95)
T 1ufw_A 15 DATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ 60 (95)
T ss_dssp TCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE
T ss_pred CCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc
Confidence 568999988743 333 5699999999999999999875
No 380
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=95.91 E-value=0.016 Score=34.26 Aligned_cols=34 Identities=21% Similarity=0.200 Sum_probs=29.4
Q ss_pred ceeEEeCCCCCCCHHHHHHHHhcCcceeEEEEec
Q 032483 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK 135 (139)
Q Consensus 102 ~~lfV~nL~~~~t~~~L~~~F~~fG~v~~~~i~~ 135 (139)
+||-|++||+..||+++.+.+++...+....-+.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~ 35 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFS 35 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeC
Confidence 5899999999999999999999998877665544
No 381
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.78 E-value=0.015 Score=36.24 Aligned_cols=32 Identities=22% Similarity=0.204 Sum_probs=26.6
Q ss_pred eEEEEECC-HHHHHHHHHc----CcccCCcEEEEeec
Q 032483 13 IGFITFAS-ADSVENLMVD----THELGGSTVVVDRA 44 (139)
Q Consensus 13 ~gFV~F~~-~~~a~~Ai~~----~~~i~gr~i~v~~~ 44 (139)
.|||+|.+ +++|.+|+.+ +..|.|..+.++..
T Consensus 57 tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~evL 93 (121)
T 1owx_A 57 EGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEVL 93 (121)
T ss_dssp EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEEC
T ss_pred EEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEEC
Confidence 59999999 7899998884 47889988888754
No 382
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=95.14 E-value=0.018 Score=34.47 Aligned_cols=26 Identities=38% Similarity=0.663 Sum_probs=22.6
Q ss_pred ceeEEeCCCCCCCHHHHHHHHhcCcce
Q 032483 102 KKIFVGRLPQEATAEDLRRYFSRFGRI 128 (139)
Q Consensus 102 ~~lfV~nL~~~~t~~~L~~~F~~fG~v 128 (139)
..++| +.|.+|...||.++|++||.|
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fggv 32 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGNI 32 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEEE
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCCE
Confidence 45566 999999999999999999944
No 383
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.46 E-value=0.17 Score=30.49 Aligned_cols=36 Identities=28% Similarity=0.277 Sum_probs=30.7
Q ss_pred CCCceeEEeCCCCCCCHHHHHHHHhc-C----cceeEEEEe
Q 032483 99 RIGKKIFVGRLPQEATAEDLRRYFSR-F----GRILDVYVP 134 (139)
Q Consensus 99 ~~~~~lfV~nL~~~~t~~~L~~~F~~-f----G~v~~~~i~ 134 (139)
...++|.|.|||..++++.|.-+|+. . |+|.+++..
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~ 46 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRL 46 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEE
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEc
Confidence 34689999999999999999999997 2 788888754
No 384
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=94.31 E-value=0.054 Score=33.11 Aligned_cols=31 Identities=10% Similarity=0.272 Sum_probs=26.9
Q ss_pred ceEEEEECCHHHHHHHHH--cCcccCCcEEEEe
Q 032483 12 GIGFITFASADSVENLMV--DTHELGGSTVVVD 42 (139)
Q Consensus 12 G~gFV~F~~~~~a~~Ai~--~~~~i~gr~i~v~ 42 (139)
|=|+|+|.+...|-+|.- ++.+++||+|.|.
T Consensus 63 ~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~g 95 (117)
T 2l9w_A 63 NGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSG 95 (117)
T ss_dssp TEEEEECSCHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred CceEEEEccchhhHHHHhhcCCeeecCeEEEec
Confidence 349999999999999864 5899999999986
No 385
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=92.17 E-value=0.1 Score=35.26 Aligned_cols=26 Identities=12% Similarity=0.289 Sum_probs=22.2
Q ss_pred CCCHHHHHHHHhcCcceeEEEEeccC
Q 032483 112 EATAEDLRRYFSRFGRILDVYVPKVR 137 (139)
Q Consensus 112 ~~t~~~L~~~F~~fG~v~~~~i~~d~ 137 (139)
.-.+++|++.|++||.|.++.|+++.
T Consensus 140 ~e~~~dl~~e~~~~G~v~~~~v~~~~ 165 (222)
T 3dxb_A 140 DDLEGEVTEECGKFGAVNRVIIYQEK 165 (222)
T ss_dssp TTHHHHHHHHHTTTSCEEEEEEEEEE
T ss_pred HHHHHHHHHHHHccCCeEEEEEecCC
Confidence 34568899999999999999998664
No 386
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=91.82 E-value=0.1 Score=39.80 Aligned_cols=36 Identities=17% Similarity=0.452 Sum_probs=28.3
Q ss_pred CceeEEeCCCCCCCHHHHHHHHhcCcceeEEEEeccC
Q 032483 101 GKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKVR 137 (139)
Q Consensus 101 ~~~lfV~nL~~~~t~~~L~~~F~~fG~v~~~~i~~d~ 137 (139)
.+.|||. .|..+++.+|.++|++||+|.++..-.++
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~ 88 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF 88 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC
Confidence 4789997 79999999999999999999998765543
No 387
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=89.70 E-value=0.16 Score=30.26 Aligned_cols=28 Identities=21% Similarity=0.325 Sum_probs=23.4
Q ss_pred CceeEEeCCCCCCCHHHHHHHHhcCcce
Q 032483 101 GKKIFVGRLPQEATAEDLRRYFSRFGRI 128 (139)
Q Consensus 101 ~~~lfV~nL~~~~t~~~L~~~F~~fG~v 128 (139)
+-||-|+.||+..||+++.+.+++.=++
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~ 36 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAH 36 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCcc
Confidence 4589999999999999998888775443
No 388
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=85.04 E-value=0.71 Score=29.00 Aligned_cols=35 Identities=17% Similarity=0.153 Sum_probs=29.6
Q ss_pred cceEEEEECCHHHHHHHHHc-CcccCCcEEEEeecC
Q 032483 11 RGIGFITFASADSVENLMVD-THELGGSTVVVDRAT 45 (139)
Q Consensus 11 rG~gFV~F~~~~~a~~Ai~~-~~~i~gr~i~v~~~~ 45 (139)
..+-.|+|.++.+|++||.. +..|+|.-|=|++..
T Consensus 62 ~NWikItYds~~~A~rAL~~NG~ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 62 NSWTKITYDNPASAVDALLENGAVFNGVLLGVIPYT 97 (132)
T ss_dssp TTEEEEEBSSHHHHHHHHTTTTCEETTEECEEEECC
T ss_pred CcEEEEEcCCHHHHHHHHHhCCeEeCcEEEEEEECC
Confidence 45779999999999999995 788999877887764
No 389
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=83.81 E-value=0.67 Score=27.90 Aligned_cols=34 Identities=6% Similarity=0.108 Sum_probs=25.9
Q ss_pred ceeEEeCCCCCC-CH----HHHHHHHhcCcceeEEEEec
Q 032483 102 KKIFVGRLPQEA-TA----EDLRRYFSRFGRILDVYVPK 135 (139)
Q Consensus 102 ~~lfV~nL~~~~-t~----~~L~~~F~~fG~v~~~~i~~ 135 (139)
++|+|.||+.++ .. +.++++|..|+++......+
T Consensus 6 ntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lk 44 (104)
T 1wey_A 6 SGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFK 44 (104)
T ss_dssp CEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEET
T ss_pred ceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecC
Confidence 689999998754 22 56799999999887765543
No 390
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=76.16 E-value=3.6 Score=25.30 Aligned_cols=34 Identities=24% Similarity=0.269 Sum_probs=27.7
Q ss_pred CCCceeEEeCCCCCCCHHHHHHHHhcCcceeEEEE
Q 032483 99 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYV 133 (139)
Q Consensus 99 ~~~~~lfV~nL~~~~t~~~L~~~F~~fG~v~~~~i 133 (139)
...+-|.|.+.|... -..+-.+|++||.|++...
T Consensus 22 ~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~ 55 (119)
T 1wwh_A 22 LDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVM 55 (119)
T ss_dssp GGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEE
T ss_pred CCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEecc
Confidence 345789999999885 5667788999999998875
No 391
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=75.49 E-value=2.1 Score=30.11 Aligned_cols=34 Identities=18% Similarity=0.281 Sum_probs=28.8
Q ss_pred ceeEEeCCCCCCCHHHHHHHHhcCcceeEEEEecc
Q 032483 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKV 136 (139)
Q Consensus 102 ~~lfV~nL~~~~t~~~L~~~F~~fG~v~~~~i~~d 136 (139)
.-+.|+|||+.++..-|..++.. ..+..+.++..
T Consensus 111 ~~~iv~NlPy~iss~il~~ll~~-~~~~~~~lm~Q 144 (271)
T 3fut_A 111 GSLLVANLPYHIATPLVTRLLKT-GRFARLVFLVQ 144 (271)
T ss_dssp TEEEEEEECSSCCHHHHHHHHHH-CCEEEEEEEEE
T ss_pred ccEEEecCcccccHHHHHHHhcC-CCCCEEEEEee
Confidence 45789999999999999999988 77888777654
No 392
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=73.58 E-value=2.5 Score=25.36 Aligned_cols=34 Identities=18% Similarity=0.101 Sum_probs=28.2
Q ss_pred EEEEECCHHHHHHHHHc--CcccCCcEEEEeecCCC
Q 032483 14 GFITFASADSVENLMVD--THELGGSTVVVDRATPK 47 (139)
Q Consensus 14 gFV~F~~~~~a~~Ai~~--~~~i~gr~i~v~~~~~~ 47 (139)
--|.|.++++|.+|-.. +..+.|+.++|-++.+.
T Consensus 49 irv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq~~ 84 (104)
T 1wey_A 49 VRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQTL 84 (104)
T ss_dssp EEEECSSTTHHHHHHHTSTTSEETTEECEEECCCCS
T ss_pred EEEEeCChHHHHHHHHHhccceecCceeEEEecCCC
Confidence 46899999999999774 56799999999988743
No 393
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=73.47 E-value=1 Score=31.82 Aligned_cols=36 Identities=17% Similarity=0.114 Sum_probs=30.0
Q ss_pred ceeEEeCCCCCCCHHHHHHHHhcCcceeEEEEeccC
Q 032483 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKVR 137 (139)
Q Consensus 102 ~~lfV~nL~~~~t~~~L~~~F~~fG~v~~~~i~~d~ 137 (139)
.-+.|+|||+.++..-|..++.....+..+.++..+
T Consensus 115 ~~~vv~NlPY~iss~il~~ll~~~~~~~~~~~m~Qk 150 (279)
T 3uzu_A 115 SLRIIGNLPYNISSPLLFHLMSFAPVVIDQHFMLQN 150 (279)
T ss_dssp CEEEEEECCHHHHHHHHHHHGGGGGGEEEEEEEEEH
T ss_pred ceEEEEccCccccHHHHHHHHhccCCccEEEEEeeH
Confidence 357899999999999999999877778888777543
No 394
>2k5n_A Putative cold-shock protein; GFT protein structure, PSI, nesgc, OB fold, cold shock structural genomics; NMR {Pectobacterium atrosepticum}
Probab=69.73 E-value=2.2 Score=23.89 Aligned_cols=12 Identities=33% Similarity=0.678 Sum_probs=9.1
Q ss_pred CccceEEEEECC
Q 032483 9 AHRGIGFITFAS 20 (139)
Q Consensus 9 ~srG~gFV~F~~ 20 (139)
..||||||+=.+
T Consensus 12 ~~KGfGFI~~~d 23 (74)
T 2k5n_A 12 KDKGFGFIKDEN 23 (74)
T ss_dssp TTTTEEEEEESS
T ss_pred CCCCeEEEecCC
Confidence 469999997543
No 395
>3cam_A Cold-shock domain family protein; cold shock protein, chain SWAP, STRU genomics, oxford protein production facility, OPPF, gene RE; 2.60A {Neisseria meningitidis MC58}
Probab=69.00 E-value=2.1 Score=23.42 Aligned_cols=11 Identities=45% Similarity=0.764 Sum_probs=8.5
Q ss_pred CccceEEEEEC
Q 032483 9 AHRGIGFITFA 19 (139)
Q Consensus 9 ~srG~gFV~F~ 19 (139)
..||||||+=.
T Consensus 11 ~~kGfGFI~~~ 21 (67)
T 3cam_A 11 DAKGFGFITPD 21 (67)
T ss_dssp TTTTEEEEEET
T ss_pred CCCCeEEEecC
Confidence 46899999743
No 396
>3ulj_A LIN28B, DNA-binding protein; beta barrel, cold shock domain fold, nucleic acid binding, D binding protein; 1.06A {Silurana} PDB: 4a4i_A
Probab=68.98 E-value=2.2 Score=24.85 Aligned_cols=10 Identities=40% Similarity=0.909 Sum_probs=8.3
Q ss_pred CccceEEEEE
Q 032483 9 AHRGIGFITF 18 (139)
Q Consensus 9 ~srG~gFV~F 18 (139)
..||||||+-
T Consensus 18 ~~KGfGFI~~ 27 (90)
T 3ulj_A 18 VRMGFGFISM 27 (90)
T ss_dssp TTTTEEEEEE
T ss_pred CCCCeEEeEe
Confidence 5799999974
No 397
>2kcm_A Cold shock domain family protein; nucleic acid binding protein, beta barrel, structural genomi 2, protein structure initiative; NMR {Shewanella oneidensis}
Probab=68.83 E-value=2.1 Score=23.99 Aligned_cols=12 Identities=33% Similarity=0.420 Sum_probs=9.1
Q ss_pred CccceEEEEECC
Q 032483 9 AHRGIGFITFAS 20 (139)
Q Consensus 9 ~srG~gFV~F~~ 20 (139)
..||||||+=.+
T Consensus 10 ~~KGfGFI~~~d 21 (74)
T 2kcm_A 10 AAKKYGFIQGDD 21 (74)
T ss_dssp TTTTEEEEEETT
T ss_pred CCCCEEEEecCC
Confidence 468999997543
No 398
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=68.66 E-value=1.4 Score=30.70 Aligned_cols=34 Identities=26% Similarity=0.268 Sum_probs=29.0
Q ss_pred eEEeCCCCCCCHHHHHHHHhcCcceeEEEEeccC
Q 032483 104 IFVGRLPQEATAEDLRRYFSRFGRILDVYVPKVR 137 (139)
Q Consensus 104 lfV~nL~~~~t~~~L~~~F~~fG~v~~~~i~~d~ 137 (139)
..|+|||+.++...|..+++....+..+.++..+
T Consensus 99 ~vv~NlPY~is~~il~~ll~~~~~~~~~~lm~Qk 132 (255)
T 3tqs_A 99 RVVGNLPYNISTPLLFHLFSQIHCIEDMHFMLQK 132 (255)
T ss_dssp EEEEECCHHHHHHHHHHHHHTGGGEEEEEEEEEH
T ss_pred EEEecCCcccCHHHHHHHHhCCCChheEEEEEeH
Confidence 3789999999999999999988888888777643
No 399
>1c9o_A CSPB, cold-shock protein; beta barrel, homodimer, transcription; 1.17A {Bacillus caldolyticus} SCOP: b.40.4.5 PDB: 2hax_A 1hz9_A 1hzb_A 1i5f_A 1hza_A 1hzc_A 3pf4_A 1csq_A 1nmf_A 1nmg_A 1csp_A 2f52_A 2es2_A 3pf5_A 2i5m_X 2i5l_X
Probab=68.64 E-value=2.1 Score=23.23 Aligned_cols=11 Identities=36% Similarity=0.797 Sum_probs=8.4
Q ss_pred CccceEEEEEC
Q 032483 9 AHRGIGFITFA 19 (139)
Q Consensus 9 ~srG~gFV~F~ 19 (139)
..||||||+=.
T Consensus 11 ~~kGfGFI~~~ 21 (66)
T 1c9o_A 11 NEKGYGFIEVE 21 (66)
T ss_dssp TTTTEEEEEET
T ss_pred CCCCeEEEecC
Confidence 36899999743
No 400
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=68.40 E-value=6 Score=24.31 Aligned_cols=34 Identities=12% Similarity=0.087 Sum_probs=26.4
Q ss_pred cceEEEEECCHHHHHHHHHc-CcccCC-cEEEEeec
Q 032483 11 RGIGFITFASADSVENLMVD-THELGG-STVVVDRA 44 (139)
Q Consensus 11 rG~gFV~F~~~~~a~~Ai~~-~~~i~g-r~i~v~~~ 44 (139)
..+=.|.|.++.+|++||.. +..|+| --|=|++.
T Consensus 59 ~NWihI~Y~s~~~A~rAL~kNG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 59 GNWMHIRYQSKLQARKALSKDGRIFGESIMIGVKPC 94 (119)
T ss_dssp SSEEEEEESSHHHHHHHHTTTTCEETTTEECEEEEC
T ss_pred CCeEEEEeCCHHHHHHHHHhCCeEecCCEEEEEEEC
Confidence 35788999999999999995 666764 55666654
No 401
>3a0j_A Cold shock protein; OB-fold, cytoplasm, transcription, structural genomics, NPPSFA; 1.65A {Thermus thermophilus}
Probab=67.38 E-value=2.3 Score=23.63 Aligned_cols=11 Identities=45% Similarity=0.779 Sum_probs=8.4
Q ss_pred CccceEEEEEC
Q 032483 9 AHRGIGFITFA 19 (139)
Q Consensus 9 ~srG~gFV~F~ 19 (139)
..||||||+=.
T Consensus 11 ~~kGfGFI~~~ 21 (73)
T 3a0j_A 11 AEKGYGFIERE 21 (73)
T ss_dssp TTTTEEEEECT
T ss_pred CCCCEEEEecC
Confidence 36899999743
No 402
>1h95_A CSD, Y-box binding protein; translation factor, transcription factor, OB-fold, 5- stranded anti-parallel beta-barrel, single stranded DNA binding; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=66.87 E-value=2.7 Score=23.78 Aligned_cols=10 Identities=40% Similarity=0.727 Sum_probs=8.2
Q ss_pred CccceEEEEE
Q 032483 9 AHRGIGFITF 18 (139)
Q Consensus 9 ~srG~gFV~F 18 (139)
..||||||+=
T Consensus 18 ~~kGfGFI~~ 27 (79)
T 1h95_A 18 VRNGYGFINR 27 (79)
T ss_dssp TTTTEEEEEE
T ss_pred CCCCcEEEec
Confidence 3799999974
No 403
>1g6p_A Cold shock protein TMCSP; greek-KEY, beta barrel, OB-fold, structural genomics; NMR {Thermotoga maritima} SCOP: b.40.4.5
Probab=66.64 E-value=2.5 Score=22.98 Aligned_cols=11 Identities=45% Similarity=0.812 Sum_probs=8.6
Q ss_pred CccceEEEEEC
Q 032483 9 AHRGIGFITFA 19 (139)
Q Consensus 9 ~srG~gFV~F~ 19 (139)
..||||||+=.
T Consensus 10 ~~kGfGFI~~~ 20 (66)
T 1g6p_A 10 SKKGYGFITKD 20 (66)
T ss_dssp TTTTEEEEEET
T ss_pred CCCCEEEEecC
Confidence 36899999744
No 404
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=65.82 E-value=2.9 Score=30.66 Aligned_cols=22 Identities=14% Similarity=0.182 Sum_probs=19.4
Q ss_pred eeEEeCCCCCCCHHHHHHHHhc
Q 032483 103 KIFVGRLPQEATAEDLRRYFSR 124 (139)
Q Consensus 103 ~lfV~nL~~~~t~~~L~~~F~~ 124 (139)
-.+|+|||+.++..-|..++..
T Consensus 144 ~~vvaNLPYnIstpil~~ll~~ 165 (353)
T 1i4w_A 144 FLTVANVTGEGSEGLIMQWLSC 165 (353)
T ss_dssp EEEEEECCSTTHHHHHHHHHHH
T ss_pred eEEEEECCCchHHHHHHHHHHh
Confidence 4789999999999999988874
No 405
>3i2z_B RNA chaperone, negative regulator of CSPA transcription; beta barrel, DNA binding protein/transcription, cytoplasm, gene regulation; 1.10A {Salmonella typhimurium} SCOP: b.40.4.5 PDB: 2l15_A 1mjc_A 3mef_A
Probab=64.31 E-value=2.9 Score=23.09 Aligned_cols=11 Identities=45% Similarity=0.800 Sum_probs=8.6
Q ss_pred CccceEEEEEC
Q 032483 9 AHRGIGFITFA 19 (139)
Q Consensus 9 ~srG~gFV~F~ 19 (139)
..||||||+=.
T Consensus 15 ~~kGfGFI~~~ 25 (71)
T 3i2z_B 15 ESKGFGFITPE 25 (71)
T ss_dssp TTTTEEEEEET
T ss_pred CCCCcEEEecC
Confidence 46899999743
No 406
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=62.74 E-value=4 Score=28.10 Aligned_cols=34 Identities=12% Similarity=-0.025 Sum_probs=27.6
Q ss_pred eeEEeCCCCCCCHHHHHHHHhcCcceeEEEEecc
Q 032483 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKV 136 (139)
Q Consensus 103 ~lfV~nL~~~~t~~~L~~~F~~fG~v~~~~i~~d 136 (139)
-+.|+|||+.++..-|..++.....+..+.++..
T Consensus 97 ~~vv~NlPy~i~~~il~~ll~~~~~~~~~~~m~Q 130 (249)
T 3ftd_A 97 LKVVGNLPYNVASLIIENTVYNKDCVPLAVFMVQ 130 (249)
T ss_dssp EEEEEECCTTTHHHHHHHHHHTGGGCSEEEEEEE
T ss_pred cEEEEECchhccHHHHHHHHhcCCCCceEEEEEe
Confidence 4789999999999999999987666777666543
No 407
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=62.45 E-value=5.5 Score=27.49 Aligned_cols=33 Identities=21% Similarity=0.180 Sum_probs=26.1
Q ss_pred eeEEeCCCCCCCHHHHHHHHhcCcceeEEEEec
Q 032483 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK 135 (139)
Q Consensus 103 ~lfV~nL~~~~t~~~L~~~F~~fG~v~~~~i~~ 135 (139)
-+.|+|||+.++...|..++...-.+..+.++.
T Consensus 92 ~~vvsNlPY~i~~~il~~ll~~~~~~~~~~~m~ 124 (252)
T 1qyr_A 92 LRVFGNLPYNISTPLMFHLFSYTDAIADMHFML 124 (252)
T ss_dssp EEEEEECCTTTHHHHHHHHHTTGGGEEEEEEEE
T ss_pred eEEEECCCCCccHHHHHHHHhcCCCcceEEEEE
Confidence 578999999999999988887655666666554
No 408
>2yty_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=60.09 E-value=3.7 Score=23.71 Aligned_cols=8 Identities=38% Similarity=0.683 Sum_probs=6.8
Q ss_pred cceEEEEE
Q 032483 11 RGIGFITF 18 (139)
Q Consensus 11 rG~gFV~F 18 (139)
||||||+=
T Consensus 28 kGfGFI~~ 35 (88)
T 2yty_A 28 DNFGFIET 35 (88)
T ss_dssp SSEEEEEC
T ss_pred CCccEEec
Confidence 79999974
No 409
>2ytv_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=59.60 E-value=2.5 Score=23.92 Aligned_cols=10 Identities=30% Similarity=0.783 Sum_probs=7.7
Q ss_pred ccceEEEEEC
Q 032483 10 HRGIGFITFA 19 (139)
Q Consensus 10 srG~gFV~F~ 19 (139)
.||||||+-.
T Consensus 17 ~KGfGFI~~d 26 (79)
T 2ytv_A 17 KDQFGFINYE 26 (79)
T ss_dssp CSSEEEESCC
T ss_pred cccceeEeCC
Confidence 5999999633
No 410
>2ytx_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=59.45 E-value=3.9 Score=24.11 Aligned_cols=10 Identities=30% Similarity=0.577 Sum_probs=7.9
Q ss_pred ccceEEEEEC
Q 032483 10 HRGIGFITFA 19 (139)
Q Consensus 10 srG~gFV~F~ 19 (139)
.||||||+=.
T Consensus 27 ~KGfGFI~~d 36 (97)
T 2ytx_A 27 KEAFGFIERG 36 (97)
T ss_dssp CSSEEEEECS
T ss_pred eCCceEEecC
Confidence 5899999743
No 411
>3aqq_A Calcium-regulated heat stable protein 1; compact beta-barrel, cold shock domain, ssDNA binding, DNA B protein; 2.80A {Homo sapiens}
Probab=56.72 E-value=5.5 Score=25.44 Aligned_cols=12 Identities=50% Similarity=0.708 Sum_probs=9.6
Q ss_pred CccceEEEEECC
Q 032483 9 AHRGIGFITFAS 20 (139)
Q Consensus 9 ~srG~gFV~F~~ 20 (139)
..||||||+-.+
T Consensus 72 ~~KGfGFI~~dd 83 (147)
T 3aqq_A 72 RSKGHGFITPAD 83 (147)
T ss_dssp TTTTEEEEEESS
T ss_pred CCCCeEEeccCC
Confidence 369999998754
No 412
>2lss_A Cold shock-like protein; CSD, CSP, oligonucleotide binding F fold, RNA binding protein, DNA binding protein; NMR {Rickettsia rickettsii}
Probab=61.24 E-value=2.3 Score=23.40 Aligned_cols=12 Identities=25% Similarity=0.567 Sum_probs=8.9
Q ss_pred CccceEEEEECC
Q 032483 9 AHRGIGFITFAS 20 (139)
Q Consensus 9 ~srG~gFV~F~~ 20 (139)
..||||||+=.+
T Consensus 14 ~~kGfGFI~~~~ 25 (70)
T 2lss_A 14 STKNFGFIEQDN 25 (70)
Confidence 368999997443
No 413
>1x65_A UNR protein; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold, greek-KEY topology protein; NMR {Homo sapiens}
Probab=52.18 E-value=5.2 Score=23.17 Aligned_cols=10 Identities=40% Similarity=0.826 Sum_probs=8.4
Q ss_pred cceEEEEECC
Q 032483 11 RGIGFITFAS 20 (139)
Q Consensus 11 rG~gFV~F~~ 20 (139)
||||||+-.+
T Consensus 18 KGfGFI~~~~ 27 (89)
T 1x65_A 18 DGFGFIKCVD 27 (89)
T ss_dssp TTBCEEEESS
T ss_pred CCcceeecCC
Confidence 8999998654
No 414
>2ki0_A DS119; beta-alpha-beta, de novo protein; NMR {Synthetic}
Probab=51.51 E-value=9 Score=17.42 Aligned_cols=18 Identities=33% Similarity=0.584 Sum_probs=13.3
Q ss_pred CceeEEeCCCCCCCHHHHHHHHh
Q 032483 101 GKKIFVGRLPQEATAEDLRRYFS 123 (139)
Q Consensus 101 ~~~lfV~nL~~~~t~~~L~~~F~ 123 (139)
.++|+|++ |.++|+.+-+
T Consensus 5 vrtiwvgg-----tpeelkklke 22 (36)
T 2ki0_A 5 VRTIWVGG-----TPEELKKLKE 22 (36)
T ss_dssp CCCCCBCC-----CHHHHHHHHH
T ss_pred eEEEEecC-----CHHHHHHHHH
Confidence 57899998 6677776644
No 415
>1wfq_A UNR protein; beta-barrel, translational regulation, RNA chaperone, RNA/DN binding, QB fold, greek-KEY topology, structur genomics; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=50.87 E-value=8.3 Score=22.26 Aligned_cols=9 Identities=33% Similarity=0.645 Sum_probs=7.4
Q ss_pred cceEEEEEC
Q 032483 11 RGIGFITFA 19 (139)
Q Consensus 11 rG~gFV~F~ 19 (139)
||||||+=.
T Consensus 28 KGfGFI~~d 36 (89)
T 1wfq_A 28 TSYGFIQCS 36 (89)
T ss_dssp SSEEEEEET
T ss_pred CCeeEEecC
Confidence 899999743
No 416
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=49.52 E-value=30 Score=26.51 Aligned_cols=33 Identities=30% Similarity=0.459 Sum_probs=25.3
Q ss_pred CCceeEEeCCCCCCCHHHHHHHHhcCcceeEEEEe
Q 032483 100 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP 134 (139)
Q Consensus 100 ~~~~lfV~nL~~~~t~~~L~~~F~~fG~v~~~~i~ 134 (139)
....++|+ +|..|...+|.++|+.||.| +|+.+
T Consensus 439 R~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~wi 471 (507)
T 3d45_A 439 RDHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWI 471 (507)
T ss_dssp GGGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEEC
T ss_pred cCcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEE
Confidence 34566666 99999999999999999954 44433
No 417
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=46.57 E-value=7.8 Score=24.61 Aligned_cols=11 Identities=27% Similarity=0.809 Sum_probs=9.3
Q ss_pred CccceEEEEEC
Q 032483 9 AHRGIGFITFA 19 (139)
Q Consensus 9 ~srG~gFV~F~ 19 (139)
..||||||+..
T Consensus 19 ~~kGfGFI~~~ 29 (148)
T 3ts2_A 19 VRMGFGFLSMT 29 (148)
T ss_dssp TTTTEEEEEEE
T ss_pred CCCCeeEEeeC
Confidence 46899999976
No 418
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3
Probab=44.41 E-value=13 Score=22.28 Aligned_cols=20 Identities=15% Similarity=0.207 Sum_probs=14.6
Q ss_pred CCCccceEEEEECCHHHHHHH
Q 032483 7 SKAHRGIGFITFASADSVENL 27 (139)
Q Consensus 7 tg~srG~gFV~F~~~~~a~~A 27 (139)
.|++.|||.| |.+.+.|.+-
T Consensus 70 ~gkstG~a~I-Yds~e~akk~ 89 (107)
T 2v94_A 70 SYKSKGYAKY-YYDKDRMLYI 89 (107)
T ss_dssp CSEEEEEEEE-ESSHHHHHHH
T ss_pred CceEEEEEEE-ECCHHHHHhh
Confidence 5788999987 6777766543
No 419
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=42.29 E-value=12 Score=22.21 Aligned_cols=20 Identities=15% Similarity=0.439 Sum_probs=13.8
Q ss_pred CCCccceEEEEECCHHHHHHH
Q 032483 7 SKAHRGIGFITFASADSVENL 27 (139)
Q Consensus 7 tg~srG~gFV~F~~~~~a~~A 27 (139)
.|++.|||.| |.+.+.|.+-
T Consensus 61 ~gkstG~a~I-Yds~e~akk~ 80 (101)
T 1xn9_A 61 MQESKGYAKL-YEDADRMKQV 80 (101)
T ss_dssp SSEEEEEEEE-CSCHHHHHHH
T ss_pred CceEEEEEEE-ECCHHHHHhh
Confidence 5788899977 5666665543
No 420
>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3
Probab=41.27 E-value=13 Score=22.15 Aligned_cols=19 Identities=11% Similarity=0.242 Sum_probs=13.4
Q ss_pred CCCccceEEEEECCHHHHHH
Q 032483 7 SKAHRGIGFITFASADSVEN 26 (139)
Q Consensus 7 tg~srG~gFV~F~~~~~a~~ 26 (139)
.|++.|||.| |.+.+.|.+
T Consensus 61 ~gkstG~a~I-Yds~e~akk 79 (102)
T 1ywx_A 61 KLEAEGYAKI-YNDEKAMAT 79 (102)
T ss_dssp SSEEEEEEEE-CSCHHHHHH
T ss_pred CceEEEEEEE-ECCHHHHHh
Confidence 5788999987 666666543
No 421
>4aj5_1 SKA3, spindle and kinetochore-associated protein 3; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=40.54 E-value=11 Score=22.32 Aligned_cols=12 Identities=33% Similarity=0.971 Sum_probs=8.7
Q ss_pred HHHHHHHHhcCc
Q 032483 115 AEDLRRYFSRFG 126 (139)
Q Consensus 115 ~~~L~~~F~~fG 126 (139)
-..|+++|++||
T Consensus 90 I~~ire~fqKYG 101 (101)
T 4aj5_1 90 IMKIREYFQKYG 101 (101)
T ss_dssp HHHHHHHHHHC-
T ss_pred HHHHHHHHHHcC
Confidence 456888898887
No 422
>2g1d_A 30S ribosomal protein S24E; complete proteome, ribosome; NMR {Thermoplasma acidophilum} SCOP: d.12.1.3
Probab=40.53 E-value=12 Score=22.18 Aligned_cols=18 Identities=22% Similarity=0.217 Sum_probs=11.6
Q ss_pred CCCccceEEEEECCHHHHH
Q 032483 7 SKAHRGIGFITFASADSVE 25 (139)
Q Consensus 7 tg~srG~gFV~F~~~~~a~ 25 (139)
.|++.|||.| |.+.+.|.
T Consensus 62 ~gks~G~a~I-Yds~e~~k 79 (98)
T 2g1d_A 62 KHEIEGYTKI-YADKPSAM 79 (98)
T ss_dssp SSEEEEEEEE-ESHHHHHH
T ss_pred CceEEEEEEE-ECCHHHHH
Confidence 4788889887 44444443
No 423
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=39.96 E-value=21 Score=19.13 Aligned_cols=13 Identities=15% Similarity=0.350 Sum_probs=10.5
Q ss_pred CccceEEEEECCH
Q 032483 9 AHRGIGFITFASA 21 (139)
Q Consensus 9 ~srG~gFV~F~~~ 21 (139)
..++.|||.|.|.
T Consensus 33 ~~~~~ClV~FeD~ 45 (63)
T 2e5q_A 33 SSKQSCLVTFEDN 45 (63)
T ss_dssp STTSEEEEEETTS
T ss_pred cCCCEEEEEEccC
Confidence 4578999999874
No 424
>2bh8_A 1B11; transcription, molecular evolution, unique architecture, transcription regulation, phosphorylation; 1.9A {Escherichia coli}
Probab=36.29 E-value=19 Score=21.11 Aligned_cols=9 Identities=56% Similarity=0.999 Sum_probs=7.4
Q ss_pred ccceEEEEE
Q 032483 10 HRGIGFITF 18 (139)
Q Consensus 10 srG~gFV~F 18 (139)
.||||||+-
T Consensus 27 ~kGfGFI~~ 35 (101)
T 2bh8_A 27 DKGFGFITP 35 (101)
T ss_dssp GGTEEEEEE
T ss_pred CCCCEEEEe
Confidence 589999974
No 425
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.18 E-value=24 Score=19.23 Aligned_cols=13 Identities=15% Similarity=0.452 Sum_probs=10.1
Q ss_pred CccceEEEEECCH
Q 032483 9 AHRGIGFITFASA 21 (139)
Q Consensus 9 ~srG~gFV~F~~~ 21 (139)
..++.|||.|.|.
T Consensus 35 ~~~~~ClV~FeD~ 47 (68)
T 2e5p_A 35 SAREVCLVQFEDD 47 (68)
T ss_dssp TTTTEEEEEETTT
T ss_pred cCCcEEEEEEccC
Confidence 4578899999874
No 426
>3pc6_A DNA repair protein XRCC1; BRCT domain, protein:protein interactions, DNA L III-alpha BRCT2 domain, DNA binding protein; HET: DNA; 1.90A {Mus musculus} SCOP: c.15.1.1 PDB: 3pc8_A* 3qvg_B* 1cdz_A
Probab=35.05 E-value=36 Score=20.13 Aligned_cols=29 Identities=24% Similarity=0.264 Sum_probs=23.4
Q ss_pred CCceeEEeCCCCCCCHHHHHHHHhcCcce
Q 032483 100 IGKKIFVGRLPQEATAEDLRRYFSRFGRI 128 (139)
Q Consensus 100 ~~~~lfV~nL~~~~t~~~L~~~F~~fG~v 128 (139)
.+.++|+.+.-+......|+.++-.||-.
T Consensus 9 ~g~~f~l~~~~p~~~r~~l~ryiia~GG~ 37 (104)
T 3pc6_A 9 EGKHFFLYGEFPGDERRRLIRYVTAFNGE 37 (104)
T ss_dssp TTCEEEEESCCSTTHHHHHHHHHHHTTCE
T ss_pred CCeEEEEcCCCcHHHHHHHHHHHHHcCCE
Confidence 47899998887656778899999999754
No 427
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=34.49 E-value=41 Score=19.25 Aligned_cols=21 Identities=19% Similarity=0.328 Sum_probs=18.3
Q ss_pred ccceEEEEECCHHHHHHHHHc
Q 032483 10 HRGIGFITFASADSVENLMVD 30 (139)
Q Consensus 10 srG~gFV~F~~~~~a~~Ai~~ 30 (139)
-.||-||++...++.-.+|..
T Consensus 49 fPGYVfVe~~~~~~~~~~I~~ 69 (92)
T 3lpe_A 49 LKGYVLVEAETKGDVEELIKG 69 (92)
T ss_dssp STTEEEEEESSHHHHHHHHTT
T ss_pred cCCEEEEEEecchhHHHHHHC
Confidence 589999999999998888864
No 428
>3zzp_A TS9, ribosomal protein S6; protein folding, RNA-binding; 0.96A {Thermus thermophilus}
Probab=33.18 E-value=65 Score=17.86 Aligned_cols=31 Identities=10% Similarity=0.109 Sum_probs=20.5
Q ss_pred eEEEEECCHHHHHHHHHcCcccCC---cEEEEee
Q 032483 13 IGFITFASADSVENLMVDTHELGG---STVVVDR 43 (139)
Q Consensus 13 ~gFV~F~~~~~a~~Ai~~~~~i~g---r~i~v~~ 43 (139)
|.++.|....++-+-++....++. |.+.|+.
T Consensus 7 Yvl~~~~a~~~~i~Eler~~rine~VlR~l~vr~ 40 (77)
T 3zzp_A 7 TTWYQVEMPEDRVNDLARELRIRDNVRRVMVVAS 40 (77)
T ss_dssp EEEEEEECCHHHHHHHHHHHHTSTTEEEEEEEEC
T ss_pred EEEEEEEeCHhHHHHHHHHhCCCHHHHHHHHHhc
Confidence 788999877666666665555555 5556654
No 429
>1ik9_C DNA ligase IV; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens}
Probab=30.00 E-value=35 Score=16.09 Aligned_cols=14 Identities=21% Similarity=0.456 Sum_probs=11.5
Q ss_pred CCCHHHHHHHHhcC
Q 032483 112 EATAEDLRRYFSRF 125 (139)
Q Consensus 112 ~~t~~~L~~~F~~f 125 (139)
+++.++|+.+|..-
T Consensus 21 d~t~~eLk~il~~m 34 (37)
T 1ik9_C 21 DTDLNQLKEVFSGI 34 (37)
T ss_dssp CCCHHHHHHHHHTC
T ss_pred cCCHHHHHHHHHHc
Confidence 56899999999764
No 430
>2xzm_P RPS24E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_P
Probab=29.12 E-value=32 Score=21.94 Aligned_cols=19 Identities=5% Similarity=0.282 Sum_probs=14.0
Q ss_pred CCCccceEEEEECCHHHHHH
Q 032483 7 SKAHRGIGFITFASADSVEN 26 (139)
Q Consensus 7 tg~srG~gFV~F~~~~~a~~ 26 (139)
.|++.|||.| |.+.+.|.+
T Consensus 64 ggkStGfa~I-YDs~e~aKk 82 (149)
T 2xzm_P 64 GGKSTGFALV-YDNQQYLLK 82 (149)
T ss_dssp SSEEEEEEEE-ESCHHHHHH
T ss_pred CceEEEEEEE-eCCHHHHHh
Confidence 5788999988 666666654
No 431
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=28.69 E-value=90 Score=18.10 Aligned_cols=19 Identities=21% Similarity=0.361 Sum_probs=16.7
Q ss_pred ceEEEEECCHHHHHHHHHc
Q 032483 12 GIGFITFASADSVENLMVD 30 (139)
Q Consensus 12 G~gFV~F~~~~~a~~Ai~~ 30 (139)
|-+.|.|.+.++..-||+.
T Consensus 47 gqamirfqnsdeqrlaiqk 65 (129)
T 4eyt_A 47 GQAMIRFQNSDEQRLAIQK 65 (129)
T ss_dssp SCEEEEESSHHHHHHHHHH
T ss_pred CeeEEEecCChHHHHHHHH
Confidence 5688999999999999984
No 432
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=28.07 E-value=60 Score=19.24 Aligned_cols=23 Identities=9% Similarity=0.138 Sum_probs=20.6
Q ss_pred CccceEEEEECCHHHHHHHHHcC
Q 032483 9 AHRGIGFITFASADSVENLMVDT 31 (139)
Q Consensus 9 ~srG~gFV~F~~~~~a~~Ai~~~ 31 (139)
.-|||=||+=.+..++.+|++..
T Consensus 49 ~lkGyIyVEA~~~~~V~~ai~gi 71 (106)
T 3h7h_B 49 HVKGYIYVEAYKQTHVKQAIEGV 71 (106)
T ss_dssp TCCSEEEEEESSHHHHHHHHTTC
T ss_pred CCceEEEEEeCCHHHHHHHHhcc
Confidence 36999999999999999999964
No 433
>1eij_A Hypothetical protein MTH1615; beta-helix, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: a.5.6.1
Probab=26.98 E-value=46 Score=18.81 Aligned_cols=19 Identities=32% Similarity=0.588 Sum_probs=16.4
Q ss_pred eCCCCCCCHHHHHHHHhcC
Q 032483 107 GRLPQEATAEDLRRYFSRF 125 (139)
Q Consensus 107 ~nL~~~~t~~~L~~~F~~f 125 (139)
|.|...+||++|+++.++.
T Consensus 50 Gqi~~ki~e~~L~~lL~~i 68 (80)
T 1eij_A 50 GRVRSKITDEQLKELLKRV 68 (80)
T ss_dssp CSSCCCCCHHHHHHHHHHH
T ss_pred CCCCCCcCHHHHHHHHHHH
Confidence 5778889999999999875
No 434
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=26.65 E-value=42 Score=18.80 Aligned_cols=13 Identities=15% Similarity=0.452 Sum_probs=10.4
Q ss_pred CccceEEEEECCH
Q 032483 9 AHRGIGFITFASA 21 (139)
Q Consensus 9 ~srG~gFV~F~~~ 21 (139)
..++.|||.|.|.
T Consensus 52 ~~~e~ClV~F~D~ 64 (79)
T 2m0o_A 52 SAREVCLVQFEDD 64 (79)
T ss_dssp TTTTEEEEEETTS
T ss_pred cCCCEEEEEEcCC
Confidence 4578899999874
No 435
>2jsh_A Appetite-regulating hormone, obestatin; micellar solution, DPC, SDS, alternative splicing, amidation, lipoprotein, secreted; NMR {Synthetic} PDB: 2jsj_A
Probab=24.91 E-value=30 Score=15.07 Aligned_cols=22 Identities=18% Similarity=0.274 Sum_probs=12.9
Q ss_pred CCCCCCCHHHHHHHHhcCccee
Q 032483 108 RLPQEATAEDLRRYFSRFGRIL 129 (139)
Q Consensus 108 nL~~~~t~~~L~~~F~~fG~v~ 129 (139)
|.|+++--..-.+-|.+||.+.
T Consensus 2 naPFeiGi~ls~~~y~~yG~~L 23 (26)
T 2jsh_A 2 NAPFDVGIKLSGAQYQQHGRAL 23 (26)
T ss_dssp CSCSSTTGGGHHHHCSCSSSCC
T ss_pred CCceeEeeEecHHHHHHHhHHh
Confidence 3455544444456678888764
No 436
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=24.70 E-value=49 Score=17.96 Aligned_cols=13 Identities=23% Similarity=0.365 Sum_probs=10.0
Q ss_pred CccceEEEEECCH
Q 032483 9 AHRGIGFITFASA 21 (139)
Q Consensus 9 ~srG~gFV~F~~~ 21 (139)
..+|.|+|.|.|-
T Consensus 39 ~~~gtC~V~F~D~ 51 (66)
T 2eqj_A 39 ILKQSCFIIFEDS 51 (66)
T ss_dssp TTTTEEEEEETTT
T ss_pred cCCcEEEEEEccC
Confidence 3478999999873
No 437
>3u5c_Y RP50, 40S ribosomal protein S24-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_U* 3j16_D 3u5g_Y
Probab=24.44 E-value=43 Score=20.97 Aligned_cols=19 Identities=16% Similarity=0.441 Sum_probs=13.8
Q ss_pred CCCccceEEEEECCHHHHHH
Q 032483 7 SKAHRGIGFITFASADSVEN 26 (139)
Q Consensus 7 tg~srG~gFV~F~~~~~a~~ 26 (139)
.|++.|||.| |.+.+.|.+
T Consensus 66 ~gkstGfa~I-Yds~d~akk 84 (135)
T 3u5c_Y 66 GGKSVGFGLV-YNSVAEAKK 84 (135)
T ss_dssp SSEEEEEEEE-ESSHHHHHH
T ss_pred CceEEEEEEE-eCCHHHHHh
Confidence 5788899988 666666654
No 438
>1ytr_A Bacteriocin plantaricin A; antibiotic, pheromone, amphipathic helix, micelle; NMR {Synthetic}
Probab=24.28 E-value=45 Score=13.94 Aligned_cols=12 Identities=17% Similarity=0.791 Sum_probs=8.5
Q ss_pred HHHHHHHHhcCc
Q 032483 115 AEDLRRYFSRFG 126 (139)
Q Consensus 115 ~~~L~~~F~~fG 126 (139)
-.+++.+|.++|
T Consensus 14 ikqvkklfkkwg 25 (26)
T 1ytr_A 14 IKQVKKLFKKWG 25 (26)
T ss_dssp HHHHHHHHTTCC
T ss_pred HHHHHHHHHHcC
Confidence 356778888776
No 439
>3ghf_A Septum site-determining protein MINC; structural genomics, cell division, cell cycle, septation, PSI-2, protein structure initiative; HET: CIT; 2.20A {Salmonella typhimurium LT2}
Probab=24.16 E-value=74 Score=19.17 Aligned_cols=27 Identities=19% Similarity=0.187 Sum_probs=22.8
Q ss_pred eeEEeCCCCCCCHHHHHHHHhcCccee
Q 032483 103 KIFVGRLPQEATAEDLRRYFSRFGRIL 129 (139)
Q Consensus 103 ~lfV~nL~~~~t~~~L~~~F~~fG~v~ 129 (139)
.|.+..|+...+...|.+++..+|-+.
T Consensus 51 VlDl~~l~~~~dl~~L~~~l~~~gl~~ 77 (120)
T 3ghf_A 51 VINVSGLESPVNWPELHKIVTSTGLRI 77 (120)
T ss_dssp EEEEEECCSSCCHHHHHHHHHTTTCEE
T ss_pred EEEccccCChHHHHHHHHHHHHcCCEE
Confidence 678889987788999999999998554
No 440
>1jsd_A Haemagglutinin (HA1 chain); viral protein; HET: NAG; 1.80A {Influenza a virus} SCOP: b.19.1.2 PDB: 1jsh_A* 1jsi_A*
Probab=23.96 E-value=52 Score=23.70 Aligned_cols=24 Identities=21% Similarity=0.218 Sum_probs=21.0
Q ss_pred CCHHHHHHHHhcCcceeEEEEecc
Q 032483 113 ATAEDLRRYFSRFGRILDVYVPKV 136 (139)
Q Consensus 113 ~t~~~L~~~F~~fG~v~~~~i~~d 136 (139)
.+.++||++|+.-+.++.+++..+
T Consensus 96 ~d~eeLR~l~ss~~s~er~~~~p~ 119 (319)
T 1jsd_A 96 ENLEELRSLFSSASSYQRIQIFPD 119 (319)
T ss_dssp TTHHHHHHHHHHSSEEEEEESSCG
T ss_pred CCHHHHHHHHhccCccceEEecCC
Confidence 478999999999999999988743
No 441
>4fqi_A Hemagglutinin HA1; neutralizing antibodies, antibody affinity, antigens, epitop glycosylation, hemagglutinin glycoproteins; HET: NAG; 1.71A {Influenza a virus} PDB: 2fk0_A* 3gbm_A* 3fku_A* 2ibx_A* 3s13_A* 3s12_A* 3s11_A*
Probab=23.76 E-value=47 Score=24.07 Aligned_cols=24 Identities=17% Similarity=0.283 Sum_probs=21.1
Q ss_pred CCHHHHHHHHhcCcceeEEEEecc
Q 032483 113 ATAEDLRRYFSRFGRILDVYVPKV 136 (139)
Q Consensus 113 ~t~~~L~~~F~~fG~v~~~~i~~d 136 (139)
.+.++||++|+.-+.++.++|..+
T Consensus 100 ~d~eeLR~llss~~~~er~~ifp~ 123 (334)
T 4fqi_A 100 NDYEELKHLLSRINHFEKIQIIPK 123 (334)
T ss_dssp TTHHHHHHHHTTEEEEEEEESSCG
T ss_pred CCHHHHHHHHhccCceeeEEecCC
Confidence 578999999999999999998654
No 442
>2lvl_A SPAI; lantibiotic SELF-immunity protein, subtilin, immune system, lantibiotic-binding-protein; NMR {Bacillus subtilis}
Probab=23.37 E-value=40 Score=19.82 Aligned_cols=22 Identities=23% Similarity=0.430 Sum_probs=19.1
Q ss_pred CceeEEeCCCCCCCHHHHHHHH
Q 032483 101 GKKIFVGRLPQEATAEDLRRYF 122 (139)
Q Consensus 101 ~~~lfV~nL~~~~t~~~L~~~F 122 (139)
+.+.||-+=...|++++|++-+
T Consensus 56 g~tffvdgdgkrwseeelkepy 77 (128)
T 2lvl_A 56 GQTFFVDGDGKRWSEEELKEPY 77 (128)
T ss_dssp CCEEEECSSCCBCCHHHHSSCS
T ss_pred ccEEEEcCCCcccCHhHhcCCc
Confidence 5789999999999999998743
No 443
>4gxx_A Hemagglutinin HA1 chain; viral fusion protein, virus attachment and entry, viral PROT; HET: NAG BMA MAN; 1.80A {Influenza a virus} PDB: 3gbn_A* 3lzf_A* 3r2x_A* 4eef_A* 4gxu_A* 1rd8_A* 2wrg_H* 1ruz_H* 1rv0_H* 1rvt_H* 1ruy_H* 3hto_A* 3htp_A* 3htq_A* 3htt_A* 2wrh_H* 3m6s_A* 4f3z_A* 3lzg_A* 3al4_A* ...
Probab=22.97 E-value=50 Score=23.90 Aligned_cols=24 Identities=17% Similarity=0.115 Sum_probs=20.9
Q ss_pred CCHHHHHHHHhcCcceeEEEEecc
Q 032483 113 ATAEDLRRYFSRFGRILDVYVPKV 136 (139)
Q Consensus 113 ~t~~~L~~~F~~fG~v~~~~i~~d 136 (139)
.+.++||++|+.-+.++.++|..+
T Consensus 100 ~d~eeLR~llss~~~~er~~ifp~ 123 (331)
T 4gxx_A 100 IDYEELREQLSSVSSFEKFEIFPK 123 (331)
T ss_dssp TTHHHHHHHHTTEEEEEEEESSCT
T ss_pred CCHHHHHHHHhccCCceeEEecCC
Confidence 578999999999999999987654
No 444
>4id3_A DNA repair protein REV1; BRCT domain, protein binding; HET: DNA; 1.97A {Saccharomyces cerevisiae S288C}
Probab=22.70 E-value=1e+02 Score=16.82 Aligned_cols=31 Identities=10% Similarity=0.051 Sum_probs=23.0
Q ss_pred CCCceeEEeCCCCCCCHHHHHHHHhcCcceeE
Q 032483 99 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILD 130 (139)
Q Consensus 99 ~~~~~lfV~nL~~~~t~~~L~~~F~~fG~v~~ 130 (139)
-.+.++||.+... .+.++|+.+...+|....
T Consensus 8 f~g~~~~i~g~~~-~~~~~l~~~i~~~GG~~~ 38 (92)
T 4id3_A 8 FKNCVIYINGYTK-PGRLQLHEMIVLHGGKFL 38 (92)
T ss_dssp TTTCEEEECSCCS-SCHHHHHHHHHHTTCEEE
T ss_pred cCCEEEEEeCCCC-cCHHHHHHHHHHCCCEEE
Confidence 3468999988543 368889999999976543
No 445
>1fme_A FSD-EY peptide; beta-BETA-alpha, zinc finger, designed protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1fsd_A 1fsv_A 2k6r_A* 1psv_A
Probab=22.33 E-value=55 Score=13.93 Aligned_cols=12 Identities=25% Similarity=0.800 Sum_probs=10.1
Q ss_pred CHHHHHHHHhcC
Q 032483 114 TAEDLRRYFSRF 125 (139)
Q Consensus 114 t~~~L~~~F~~f 125 (139)
+|.+|+++.++|
T Consensus 14 nekelrdfiekf 25 (28)
T 1fme_A 14 NEKELRDFIEKF 25 (28)
T ss_dssp CHHHHHHHHHHC
T ss_pred cHHHHHHHHHHh
Confidence 688899988877
No 446
>3pc7_A DNA ligase 3; DNA repair, BRCT domain, protein:protein interactions, XRCC1 domain, DNA binding protein; HET: DNA MSE; 1.65A {Homo sapiens} SCOP: c.15.1.2 PDB: 3pc8_C* 1imo_A* 1in1_A* 3qvg_A*
Probab=22.24 E-value=36 Score=19.54 Aligned_cols=26 Identities=31% Similarity=0.620 Sum_probs=17.9
Q ss_pred CCCceeEE-eCCCCCCCHHHHHHHHhcCcc
Q 032483 99 RIGKKIFV-GRLPQEATAEDLRRYFSRFGR 127 (139)
Q Consensus 99 ~~~~~lfV-~nL~~~~t~~~L~~~F~~fG~ 127 (139)
=.+.++|| +..+ ....|+.+|-.||-
T Consensus 17 Fsg~~~~l~~~v~---~~~~l~RyiiAfgG 43 (88)
T 3pc7_A 17 FTGVRLYLPPSTP---DFSRLRRYFVAFDG 43 (88)
T ss_dssp STTCEECCCTTST---THHHHHHHHHHTTC
T ss_pred hcCeEEEccCCcC---chhhheeeeeecCC
Confidence 34678888 3443 23689999998853
No 447
>3lfj_A Manxb, phosphotransferase system, mannose/fructose/N- acetylgalactosamine-specific component...; manxb PTS; 1.56A {Thermoanaerobacter tengcongensis}
Probab=21.98 E-value=1.8e+02 Score=19.15 Aligned_cols=30 Identities=17% Similarity=0.280 Sum_probs=22.6
Q ss_pred ceEEEEECCHHHHHHHHHcCcccCCcEEEEee
Q 032483 12 GIGFITFASADSVENLMVDTHELGGSTVVVDR 43 (139)
Q Consensus 12 G~gFV~F~~~~~a~~Ai~~~~~i~gr~i~v~~ 43 (139)
--.||-|+++++|.++++.+..| ..|.|.-
T Consensus 98 ~~v~il~k~p~d~~~lve~Gv~i--~~vNvG~ 127 (187)
T 3lfj_A 98 EKVFLLFKNIDTCKRVMDGGLPI--TTLNIGG 127 (187)
T ss_dssp EEEEEEESSHHHHHHHHHTTCCC--SEEEEEE
T ss_pred ceEEEEECCHHHHHHHHHcCCCC--CEEEECC
Confidence 45799999999999999876555 3565553
No 448
>3ubq_A Hemagglutinin HA1; viral envelope protein, viral fusion protein, protein-immune system complex; HET: NAG SIA GAL; 2.00A {Influenza a virus} PDB: 3ubj_A* 3ubn_A* 3ube_A* 3lzg_A* 3ztn_A* 3al4_A* 3lyj_A* 3m6s_A* 3gbn_A* 3lzf_A* 3r2x_A* 1ruy_H* 1rd8_A* 1rvt_H* 1rv0_H* 2wrg_H* 1ruz_H* 3hto_A* 3htp_A* 3htq_A* ...
Probab=21.29 E-value=49 Score=23.93 Aligned_cols=24 Identities=17% Similarity=0.104 Sum_probs=21.0
Q ss_pred CCHHHHHHHHhcCcceeEEEEecc
Q 032483 113 ATAEDLRRYFSRFGRILDVYVPKV 136 (139)
Q Consensus 113 ~t~~~L~~~F~~fG~v~~~~i~~d 136 (139)
.+.++||++|+.-+.++.++|..+
T Consensus 98 ~d~eeLR~l~ss~~~~er~~i~p~ 121 (329)
T 3ubq_A 98 IDYEELREQLSSVSSFERFEIFPK 121 (329)
T ss_dssp TTHHHHHHHHSSEEEEEEECSSCT
T ss_pred CCHHHHHHHHhccCcceeeEeccC
Confidence 478999999999999999988753
No 449
>3c8l_A FTSZ-like protein of unknown function; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.22A {Nostoc punctiforme}
Probab=21.24 E-value=40 Score=20.72 Aligned_cols=25 Identities=24% Similarity=0.441 Sum_probs=20.0
Q ss_pred CCCCCCCHHHHHHHHhcCcceeEEEEe
Q 032483 108 RLPQEATAEDLRRYFSRFGRILDVYVP 134 (139)
Q Consensus 108 nL~~~~t~~~L~~~F~~fG~v~~~~i~ 134 (139)
.-|..++.+.++..| +||++. ++++
T Consensus 63 p~pe~vD~e~v~a~l-PyG~~~-v~vv 87 (122)
T 3c8l_A 63 PYPEQVREEEVLAVL-PFGRKT-LTVE 87 (122)
T ss_dssp SSGGGCCHHHHHTTS-CSSEEE-EEEE
T ss_pred CChhhcCHHHHHhhC-CCCceE-EEEE
Confidence 348889999999987 899984 6654
No 450
>4i78_A Hemagglutinin HA1; influenza VRUS, hemagglutinin homologue, viral protein, ectodomain; HET: NAG FUC; 3.18A {Influenza a virus}
Probab=20.84 E-value=55 Score=23.69 Aligned_cols=24 Identities=17% Similarity=0.048 Sum_probs=20.8
Q ss_pred CCHHHHHHHHhcCcceeEEEEecc
Q 032483 113 ATAEDLRRYFSRFGRILDVYVPKV 136 (139)
Q Consensus 113 ~t~~~L~~~F~~fG~v~~~~i~~d 136 (139)
.+.++||++|+.-+.++.++|..+
T Consensus 100 ~n~eeLR~l~ss~~~~eri~ifp~ 123 (328)
T 4i78_A 100 ENLQDLLLEMSGVQNFTKVKLFNP 123 (328)
T ss_dssp TTHHHHHHHTSSEEEEEEEECCCG
T ss_pred CCHHHHHHHHhccCCceeEEecCC
Confidence 578999999999999999987644
No 451
>2nn4_A Hypothetical protein YQGQ; novel fold, PFAM:DUF910, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: a.272.1.1
Probab=20.61 E-value=27 Score=19.33 Aligned_cols=18 Identities=28% Similarity=0.486 Sum_probs=14.1
Q ss_pred CHHHHHHHHhcCcceeEE
Q 032483 114 TAEDLRRYFSRFGRILDV 131 (139)
Q Consensus 114 t~~~L~~~F~~fG~v~~~ 131 (139)
|-=|+.+++.+||.+.++
T Consensus 4 tlYDVqQLLK~fG~~IY~ 21 (72)
T 2nn4_A 4 TFYDVQQLLKTFGHIVYF 21 (72)
T ss_dssp SHHHHHHHHHTTTCCCCC
T ss_pred cHHHHHHHHHHCCEEEEe
Confidence 344789999999988764
No 452
>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A
Probab=20.40 E-value=62 Score=17.11 Aligned_cols=19 Identities=16% Similarity=0.079 Sum_probs=15.4
Q ss_pred cceEEEEECCHHHHHHHHH
Q 032483 11 RGIGFITFASADSVENLMV 29 (139)
Q Consensus 11 rG~gFV~F~~~~~a~~Ai~ 29 (139)
+-.-.=+|.++|+|..|-.
T Consensus 26 ~r~~LGtf~T~eeAA~AyD 44 (63)
T 1gcc_A 26 ARVWLGTFETAEDAALAYD 44 (63)
T ss_dssp EEEEEEEESSHHHHHHHHH
T ss_pred eEEEeeeCCCHHHHHHHHH
Confidence 3456779999999999876
No 453
>3ku3_A Hemagglutinin HA1 chain; viral envelope protein, viral fusion protein, protein, viral protein; HET: NAG; 1.60A {Influenza a virus} SCOP: b.19.1.2 PDB: 3qqb_A* 3qqe_A* 3qqo_A* 3ku6_A* 3ku5_A* 1jsm_A* 1jsn_A* 1jso_A* 3qqi_A*
Probab=20.31 E-value=50 Score=23.88 Aligned_cols=24 Identities=17% Similarity=0.185 Sum_probs=20.5
Q ss_pred CCHHHHHHHHhcCcceeEEEEecc
Q 032483 113 ATAEDLRRYFSRFGRILDVYVPKV 136 (139)
Q Consensus 113 ~t~~~L~~~F~~fG~v~~~~i~~d 136 (139)
.+.++||++|+.-|.++.+++..+
T Consensus 98 ~d~eeLR~l~ss~~~~erieifp~ 121 (327)
T 3ku3_A 98 NDYEELKHLLSSVKHFEKVKILPK 121 (327)
T ss_dssp TTHHHHHHHHTTEEEEEEECCSCG
T ss_pred CCHHHHHHHHhccCCceeEEecCC
Confidence 578999999999999999887543
Done!