BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032487
(139 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A
pdb|2EFC|D Chain D, Ara7-GdpATVPS9A
pdb|2EFD|B Chain B, Ara7ATVPS9A
pdb|2EFD|D Chain D, Ara7ATVPS9A
pdb|2EFE|B Chain B, Ara7-Gdpnh2ATVPS9A
pdb|2EFE|D Chain D, Ara7-Gdpnh2ATVPS9A
pdb|2EFH|B Chain B, Ara7-GdpATVPS9A(D185N)
pdb|2EFH|D Chain D, Ara7-GdpATVPS9A(D185N)
pdb|4G01|B Chain B, Ara7-gdp-ca2+/vps9a
Length = 181
Score = 267 bits (682), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 128/136 (94%), Positives = 133/136 (97%)
Query: 1 MATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVK 60
MA GNK+INAKLVLLGDVGAGKSSLVLRFVK QF+EFQESTIGAAFFSQTLAVNDATVK
Sbjct: 3 MAAAGNKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVK 62
Query: 61 FEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMAL 120
FEIWDTAGQERYHSLAPMYYRGAAAAIIV+D+TNQASFERAKKWVQELQAQGNPNMVMAL
Sbjct: 63 FEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMAL 122
Query: 121 AGNKADLLDARKVTAE 136
AGNK+DLLDARKVTAE
Sbjct: 123 AGNKSDLLDARKVTAE 138
>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a
pdb|1R2Q|A Chain A, Crystal Structure Of Human Rab5a Gtpase Domain At 1.05 A
Resolution
Length = 170
Score = 205 bits (521), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 96/129 (74%), Positives = 109/129 (84%)
Query: 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIW 64
GNK KLVLLG+ GKSSLVLRFVKGQF EFQESTIGAAF +QT+ ++D TVKFEIW
Sbjct: 1 GNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIW 60
Query: 65 DTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNK 124
DTAGQERYHSLAPMYYRGA AAI+VYDITN+ SF RAK WV+ELQ Q +PN+V+AL+GNK
Sbjct: 61 DTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNK 120
Query: 125 ADLLDARKV 133
ADL + R V
Sbjct: 121 ADLANKRAV 129
>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|B Chain B, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|C Chain C, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|D Chain D, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|E Chain E, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
Length = 171
Score = 204 bits (520), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 96/129 (74%), Positives = 109/129 (84%)
Query: 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIW 64
GNK KLVLLG+ GKSSLVLRFVKGQF EFQESTIGAAF +QT+ ++D TVKFEIW
Sbjct: 2 GNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIW 61
Query: 65 DTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNK 124
DTAGQERYHSLAPMYYRGA AAI+VYDITN+ SF RAK WV+ELQ Q +PN+V+AL+GNK
Sbjct: 62 DTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNK 121
Query: 125 ADLLDARKV 133
ADL + R V
Sbjct: 122 ADLANKRAV 130
>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With
Gppnhp
Length = 170
Score = 204 bits (519), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 96/129 (74%), Positives = 109/129 (84%)
Query: 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIW 64
GNK KLVLLG+ GKSSLVLRFVKGQF EFQESTIGAAF +QT+ ++D TVKFEIW
Sbjct: 1 GNKICQFKLVLLGESKVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIW 60
Query: 65 DTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNK 124
DTAGQERYHSLAPMYYRGA AAI+VYDITN+ SF RAK WV+ELQ Q +PN+V+AL+GNK
Sbjct: 61 DTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNK 120
Query: 125 ADLLDARKV 133
ADL + R V
Sbjct: 121 ADLANKRAV 129
>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp
pdb|1N6K|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp And Aluminum Fluoride
pdb|1N6L|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gtp
Length = 170
Score = 204 bits (519), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 96/129 (74%), Positives = 109/129 (84%)
Query: 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIW 64
GNK KLVLLG+ GKSSLVLRFVKGQF EFQESTIGAAF +QT+ ++D TVKFEIW
Sbjct: 1 GNKICQFKLVLLGESPVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIW 60
Query: 65 DTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNK 124
DTAGQERYHSLAPMYYRGA AAI+VYDITN+ SF RAK WV+ELQ Q +PN+V+AL+GNK
Sbjct: 61 DTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNK 120
Query: 125 ADLLDARKV 133
ADL + R V
Sbjct: 121 ADLANKRAV 129
>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With
Gppnhp
Length = 170
Score = 204 bits (519), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 96/129 (74%), Positives = 109/129 (84%)
Query: 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIW 64
GNK KLVLLG+ GKSSLVLRFVKGQF EFQESTIGAAF +QT+ ++D TVKFEIW
Sbjct: 1 GNKICQFKLVLLGESEVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIW 60
Query: 65 DTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNK 124
DTAGQERYHSLAPMYYRGA AAI+VYDITN+ SF RAK WV+ELQ Q +PN+V+AL+GNK
Sbjct: 61 DTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNK 120
Query: 125 ADLLDARKV 133
ADL + R V
Sbjct: 121 ADLANKRAV 129
>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With
Gppnhp
Length = 170
Score = 204 bits (518), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 96/129 (74%), Positives = 109/129 (84%)
Query: 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIW 64
GNK KLVLLG+ GKSSLVLRFVKGQF EFQESTIGAAF +QT+ ++D TVKFEIW
Sbjct: 1 GNKICQFKLVLLGESRVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIW 60
Query: 65 DTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNK 124
DTAGQERYHSLAPMYYRGA AAI+VYDITN+ SF RAK WV+ELQ Q +PN+V+AL+GNK
Sbjct: 61 DTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNK 120
Query: 125 ADLLDARKV 133
ADL + R V
Sbjct: 121 ADLANKRAV 129
>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With
Gppnhp
Length = 170
Score = 203 bits (517), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 96/129 (74%), Positives = 109/129 (84%)
Query: 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIW 64
GNK KLVLLG+ GKSSLVLRFVKGQF EFQESTIGAAF +QT+ ++D TVKFEIW
Sbjct: 1 GNKICQFKLVLLGESLVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIW 60
Query: 65 DTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNK 124
DTAGQERYHSLAPMYYRGA AAI+VYDITN+ SF RAK WV+ELQ Q +PN+V+AL+GNK
Sbjct: 61 DTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNK 120
Query: 125 ADLLDARKV 133
ADL + R V
Sbjct: 121 ADLANKRAV 129
>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|B Chain B, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|C Chain C, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|D Chain D, Crystal Structure Of Rab5-Gdp Complex
Length = 171
Score = 202 bits (513), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 95/129 (73%), Positives = 108/129 (83%)
Query: 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIW 64
GNK KLVLLG+ GKSSLVLRFVKGQF EFQESTIGAAF +QT+ ++D TVKFEIW
Sbjct: 2 GNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIW 61
Query: 65 DTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNK 124
DTAGQERYHSLAP YYRGA AAI+VYDITN+ SF RAK WV+ELQ Q +PN+V+AL+GNK
Sbjct: 62 DTAGQERYHSLAPXYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNK 121
Query: 125 ADLLDARKV 133
ADL + R V
Sbjct: 122 ADLANKRAV 130
>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
pdb|3MJH|C Chain C, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
Length = 168
Score = 199 bits (507), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 94/128 (73%), Positives = 107/128 (83%)
Query: 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWD 65
NK KLVLLG+ GKSSLVLRFVKGQF EFQESTIGAAF +QT+ ++D TVKFEIWD
Sbjct: 1 NKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWD 60
Query: 66 TAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKA 125
TAG ERYHSLAPMYYRGA AAI+VYDITN+ SF RAK WV+ELQ Q +PN+V+AL+GNKA
Sbjct: 61 TAGLERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKA 120
Query: 126 DLLDARKV 133
DL + R V
Sbjct: 121 DLANKRAV 128
>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp
pdb|2HEI|B Chain B, Crystal Structure Of Human Rab5b In Complex With Gdp
Length = 179
Score = 198 bits (504), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 93/133 (69%), Positives = 110/133 (82%)
Query: 4 TGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEI 63
+ +K KLVLLG+ GKSSLVLRFVKGQF E+QESTIGAAF +Q++ ++D TVKFEI
Sbjct: 2 SASKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEI 61
Query: 64 WDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGN 123
WDTAGQERYHSLAPMYYRGA AAI+VYDITNQ +F RAK WV+ELQ Q +P++V+ALAGN
Sbjct: 62 WDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGN 121
Query: 124 KADLLDARKVTAE 136
KADL + R V E
Sbjct: 122 KADLANKRMVEYE 134
>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c
(Mouse)
Length = 164
Score = 197 bits (502), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 92/122 (75%), Positives = 104/122 (85%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
KLVLLG+ GKSSLVLRFVKGQF E+QESTIGAAF +QT+ ++D TVKFEIWDTAGQER
Sbjct: 5 KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQER 64
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
YHSLAPMYYRGA AAI+VYDITN +F RAK WV+ELQ Q +PN+V+ALAGNKADL R
Sbjct: 65 YHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASKR 124
Query: 132 KV 133
V
Sbjct: 125 AV 126
>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase
Length = 166
Score = 194 bits (494), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 91/122 (74%), Positives = 103/122 (84%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
KLVLLG+ GKSSLVLRFVKGQF E+QESTI AAF +QT+ ++D TVKFEIWDTAGQER
Sbjct: 7 KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIQAAFLTQTVCLDDTTVKFEIWDTAGQER 66
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
YHSLAPMYYRGA AAI+VYDITN +F RAK WV+ELQ Q +PN+V+ALAGNKADL R
Sbjct: 67 YHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASKR 126
Query: 132 KV 133
V
Sbjct: 127 AV 128
>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase
pdb|1Z0D|C Chain C, Gdp-bound Rab5c Gtpase
Length = 167
Score = 194 bits (493), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 91/122 (74%), Positives = 103/122 (84%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
KLVLLG+ GKSSLVLRFVKGQF E+QESTIGAAF +QT+ ++D TVKFEIWDTAG ER
Sbjct: 7 KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLER 66
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
YHSLAPMYYRGA AAI+VYDITN +F RAK WV+ELQ Q +PN+V+ALAGNKADL R
Sbjct: 67 YHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASKR 126
Query: 132 KV 133
V
Sbjct: 127 AV 128
>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp
Analogue
Length = 192
Score = 159 bits (402), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 74/122 (60%), Positives = 90/122 (73%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K+ LLGD G GKSS+V RFV+ F TIGA+F ++T+ + KF IWDTAGQER
Sbjct: 25 KVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQER 84
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
+HSLAPMYYRG+AAA+IVYDIT Q SF KKWV+EL+ G N+VMA+AGNK DL D R
Sbjct: 85 FHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIR 144
Query: 132 KV 133
+V
Sbjct: 145 EV 146
>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution
Length = 170
Score = 151 bits (381), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 73/128 (57%), Positives = 92/128 (71%), Gaps = 3/128 (2%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
KLVLLG+ GKSS+VLRFV F E +E TIGAAF +Q + +N+ TVKFEIWDTAGQER
Sbjct: 5 KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQER 64
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLD-- 129
+ SLAP YYR A AA++VYD+T SF +A+ WV+EL Q + ++++AL GNK D L
Sbjct: 65 FASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEG 124
Query: 130 -ARKVTAE 136
RKV E
Sbjct: 125 GERKVARE 132
>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase
Length = 169
Score = 149 bits (375), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 69/122 (56%), Positives = 89/122 (72%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K+ LLGD G GKSS+V RFV+ F TIGA+F ++T+ + KF IWDTAGQER
Sbjct: 7 KVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQER 66
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
+ +LAPMYYRG+AAAIIVYDIT + +F K WV+EL+ G P++V+A+AGNK DL D R
Sbjct: 67 FRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVR 126
Query: 132 KV 133
+V
Sbjct: 127 EV 128
>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With
The Minimal Rab Binding Domain Of Rabenosyn-5
Length = 170
Score = 144 bits (364), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 67/122 (54%), Positives = 88/122 (72%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K+ LLGD G GKSS++ RFV+ F TIGA+F ++T+ + KF IWDTAG ER
Sbjct: 8 KVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLER 67
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
+ +LAPMYYRG+AAAIIVYDIT + +F K WV+EL+ G P++V+A+AGNK DL D R
Sbjct: 68 FRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVR 127
Query: 132 KV 133
+V
Sbjct: 128 EV 129
>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed
With Gdp
Length = 162
Score = 133 bits (335), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 62/125 (49%), Positives = 86/125 (68%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
KLV LG+ GK+S++ RF F +STIG F S+TL +++ V+ ++WDTAGQER
Sbjct: 3 KLVFLGEQAVGKTSIITRFXYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQER 62
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
+ SL P Y R +AAAI+VYDITN+ SFE KW+Q++ + ++++AL GNK DL D R
Sbjct: 63 FRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGDLR 122
Query: 132 KVTAE 136
KVT E
Sbjct: 123 KVTYE 127
>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase
Length = 170
Score = 129 bits (323), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 56/125 (44%), Positives = 86/125 (68%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
KLV LG+ GK+SL+ RF+ F ++TIG F S+T+ + D T++ ++WDTAGQER
Sbjct: 8 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQER 67
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
+ SL P Y R +AAA++VYDITN SF++ KW+ +++ + ++++ L GNK DL D R
Sbjct: 68 FRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKR 127
Query: 132 KVTAE 136
+V+ E
Sbjct: 128 QVSIE 132
>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Inactive Gdp-Bound Form
pdb|2FFQ|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Active Gtpgs-Bound Form
pdb|2E9S|A Chain A, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|B Chain B, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|C Chain C, Human Neuronal Rab6b In Three Intermediate Forms
Length = 171
Score = 128 bits (322), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 55/125 (44%), Positives = 84/125 (67%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
KLV LG+ GK+SL+ RF+ F ++TIG F S+T+ + D TV+ ++WDTAGQER
Sbjct: 4 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 63
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
+ SL P Y R + A++VYDITN SF++ KW+ +++ + ++++ L GNK DL D R
Sbjct: 64 FRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIMLVGNKTDLADKR 123
Query: 132 KVTAE 136
++T E
Sbjct: 124 QITIE 128
>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
pdb|2Y8E|B Chain B, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
Length = 179
Score = 128 bits (321), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 57/132 (43%), Positives = 85/132 (64%)
Query: 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIW 64
GN KLV LG+ GK+SL+ RF+ F ++TIG F S+T+ + D TV+ ++W
Sbjct: 9 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW 68
Query: 65 DTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNK 124
DTAGQER+ SL P Y R + A++VYDITN SF + KW+ +++ + ++++ L GNK
Sbjct: 69 DTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNK 128
Query: 125 ADLLDARKVTAE 136
DL D R+V+ E
Sbjct: 129 TDLSDKRQVSTE 140
>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi
Length = 223
Score = 128 bits (321), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 59/127 (46%), Positives = 82/127 (64%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K+VL+GD G GKS+L+ RF K +F +STIG F ++TL + +K +IWDTAGQER
Sbjct: 15 KIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQER 74
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
Y ++ YYRGA A+IVYDI+ +S+E W+ EL+ + N+ + L GNK+DL R
Sbjct: 75 YRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLR 134
Query: 132 KVTAEAS 138
V E S
Sbjct: 135 AVPTEES 141
>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase
Rab1a
Length = 175
Score = 127 bits (319), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 58/125 (46%), Positives = 83/125 (66%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
KL+L+GD G GKS L+LRF + + STIG F +T+++ + TVK +IWDTAGQER
Sbjct: 11 KLLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKLQIWDTAGQER 70
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
+ ++ YYRGA IIVYD+T++ SF+ K+W+QE+ N+ L GNK DL+ R
Sbjct: 71 FRTITSSYYRGAHGIIIVYDVTDRDSFDNVKQWIQEIDRYAMENVNKLLVGNKCDLVSKR 130
Query: 132 KVTAE 136
VT++
Sbjct: 131 VVTSD 135
>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|B Chain B, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|C Chain C, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|D Chain D, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
Length = 162
Score = 127 bits (318), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 55/125 (44%), Positives = 84/125 (67%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
KLV LG+ GK+SL+ RF+ F ++TIG F S+T+ + D TV+ ++WDTAGQER
Sbjct: 3 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 62
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
+ SL P Y R + A++VYDITN SF++ KW+ +++ + ++++ L GNK DL D R
Sbjct: 63 FRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKR 122
Query: 132 KVTAE 136
+V+ E
Sbjct: 123 QVSIE 127
>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l)
pdb|4DKX|B Chain B, Crystal Structure Of The Rab 6a'(Q72l)
Length = 216
Score = 127 bits (318), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 57/132 (43%), Positives = 87/132 (65%)
Query: 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIW 64
GN KLV LG+ GK+SL+ RF+ F ++TIG F S+T+ + D T++ ++W
Sbjct: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLW 67
Query: 65 DTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNK 124
DTAG ER+ SL P Y R +AAA++VYDITN SF++ KW+ +++ + ++++ L GNK
Sbjct: 68 DTAGLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNK 127
Query: 125 ADLLDARKVTAE 136
DL D R+V+ E
Sbjct: 128 TDLADKRQVSIE 139
>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|B Chain B, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|C Chain C, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|D Chain D, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
Length = 170
Score = 126 bits (316), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 56/132 (42%), Positives = 88/132 (66%)
Query: 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIW 64
G++ + K+VLLG+ GK+SLVLR+ + +F + +T+GA+F ++ L + V IW
Sbjct: 1 GSRAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIW 60
Query: 65 DTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNK 124
DTAGQER+H+L P+YYR + AI+VYDIT++ SF++ K WV+EL+ + + + GNK
Sbjct: 61 DTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNK 120
Query: 125 ADLLDARKVTAE 136
DL R V+ +
Sbjct: 121 IDLEKERHVSIQ 132
>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex
Length = 188
Score = 125 bits (313), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 56/132 (42%), Positives = 85/132 (64%)
Query: 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIW 64
GN KLV LG+ GK+SL+ RF+ F ++TIG F S+T+ + D TV+ ++W
Sbjct: 1 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW 60
Query: 65 DTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNK 124
DTAG ER+ SL P Y R + A++VYDITN SF++ KW+ +++ + ++++ L GNK
Sbjct: 61 DTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNK 120
Query: 125 ADLLDARKVTAE 136
DL D R+V+ E
Sbjct: 121 TDLADKRQVSIE 132
>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase
Length = 184
Score = 124 bits (312), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 55/125 (44%), Positives = 85/125 (68%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K+VL+GD G GKS+L+ RF + +F +STIG F ++++ V+ T+K +IWDTAGQER
Sbjct: 22 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQER 81
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
Y ++ YYRGA A++VYDI ++E ++W++EL+ + N+V+ L GNK+DL R
Sbjct: 82 YRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLR 141
Query: 132 KVTAE 136
V +
Sbjct: 142 AVPTD 146
>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase
pdb|2F9M|A Chain A, 3d Structure Of Active Human Rab11b Gtpase
Length = 199
Score = 124 bits (312), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 55/125 (44%), Positives = 84/125 (67%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K+VL+GD G GKS+L+ RF + +F +STIG F ++++ V+ T+K +IWDTAGQER
Sbjct: 7 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQER 66
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
Y + YYRGA A++VYDI ++E ++W++EL+ + N+V+ L GNK+DL R
Sbjct: 67 YRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLR 126
Query: 132 KVTAE 136
V +
Sbjct: 127 AVPTD 131
>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
pdb|1OIV|B Chain B, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
Length = 191
Score = 124 bits (311), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 55/125 (44%), Positives = 85/125 (68%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K+VL+GD G GKS+L+ RF + +F +STIG F ++++ V+ T+K +IWDTAGQER
Sbjct: 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQER 90
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
Y ++ YYRGA A++VYDI ++E ++W++EL+ + N+V+ L GNK+DL R
Sbjct: 91 YRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLR 150
Query: 132 KVTAE 136
V +
Sbjct: 151 AVPTD 155
>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|B Chain B, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|C Chain C, Rab6-Gtp:gcc185 Rab Binding Domain Complex
Length = 211
Score = 124 bits (311), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 56/132 (42%), Positives = 85/132 (64%)
Query: 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIW 64
GN KLV LG+ GK+SL+ RF+ F ++TIG F S+T+ + D TV+ ++W
Sbjct: 11 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW 70
Query: 65 DTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNK 124
DTAG ER+ SL P Y R + A++VYDITN SF++ KW+ +++ + ++++ L GNK
Sbjct: 71 DTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNK 130
Query: 125 ADLLDARKVTAE 136
DL D R+V+ E
Sbjct: 131 TDLADKRQVSIE 142
>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|B Chain B, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|C Chain C, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|D Chain D, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|E Chain E, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
Length = 181
Score = 123 bits (309), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 57/121 (47%), Positives = 85/121 (70%), Gaps = 1/121 (0%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAV-NDATVKFEIWDTAGQE 70
K+VL+GD G GKS+L+ RF + +F +STIG F ++++ + N+ +K +IWDTAGQE
Sbjct: 9 KIVLIGDSGVGKSNLLSRFTRDEFNLESKSTIGVEFATKSIQLKNNKIIKAQIWDTAGQE 68
Query: 71 RYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDA 130
RY ++ YYRGA A++VYDIT + SFE +KW++EL+ + N+V+ L GNK+DL
Sbjct: 69 RYRAITSAYYRGAVGALLVYDITKKNSFENIEKWLKELRDNADSNIVILLVGNKSDLKHL 128
Query: 131 R 131
R
Sbjct: 129 R 129
>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
pdb|1YZT|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
Length = 184
Score = 123 bits (308), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 55/136 (40%), Positives = 88/136 (64%)
Query: 1 MATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVK 60
+ G++ + K+VLLG+ GK+SLVLR+ + +F + +T+ A+F ++ L + V
Sbjct: 11 LVPRGSRAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVN 70
Query: 61 FEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMAL 120
IWDTAGQER+H+L P+YYR + AI+VYDIT++ SF++ K WV+EL+ + + +
Sbjct: 71 LAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCI 130
Query: 121 AGNKADLLDARKVTAE 136
GNK DL R V+ +
Sbjct: 131 VGNKIDLEKERHVSIQ 146
>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1YZU|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1Z0I|A Chain A, Gdp-Bound Rab21 Gtpase
pdb|2OT3|B Chain B, Crystal Structure Of Rabex-5 Vps9 Domain In Complex With
Nucleotide Free Rab21
Length = 170
Score = 123 bits (308), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 55/132 (41%), Positives = 87/132 (65%)
Query: 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIW 64
G++ + K+VLLG+ GK+SLVLR+ + +F + +T+ A+F ++ L + V IW
Sbjct: 1 GSRAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIW 60
Query: 65 DTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNK 124
DTAGQER+H+L P+YYR + AI+VYDIT++ SF++ K WV+EL+ + + + GNK
Sbjct: 61 DTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNK 120
Query: 125 ADLLDARKVTAE 136
DL R V+ +
Sbjct: 121 IDLEKERHVSIQ 132
>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A
Length = 164
Score = 122 bits (306), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 55/116 (47%), Positives = 76/116 (65%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
KL+L+GD G GKS L+LRF + E STIG F +T+ ++ T+K +IWDTAGQER
Sbjct: 1 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 60
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADL 127
+ ++ YYRGA I+VYD+T+Q SF K+W+QE+ + N+ L GNK DL
Sbjct: 61 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL 116
>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZD|B Chain B, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZH|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Family
Interacting Protein 2
Length = 173
Score = 122 bits (305), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 54/125 (43%), Positives = 84/125 (67%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K+VL+GD G GKS+L+ RF + +F +STIG F ++++ V+ T+K +IWDTAG ER
Sbjct: 13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLER 72
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
Y ++ YYRGA A++VYDI ++E ++W++EL+ + N+V+ L GNK+DL R
Sbjct: 73 YRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGNKSDLRHLR 132
Query: 132 KVTAE 136
V +
Sbjct: 133 AVPTD 137
>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
pdb|2D7C|B Chain B, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
Length = 167
Score = 122 bits (305), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 54/125 (43%), Positives = 84/125 (67%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K+VL+GD G GKS+L+ RF + +F +STIG F ++++ V+ T+K +IWDTAG ER
Sbjct: 7 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLER 66
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
Y ++ YYRGA A++VYDI ++E ++W++EL+ + N+V+ L GNK+DL R
Sbjct: 67 YRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGNKSDLRHLR 126
Query: 132 KVTAE 136
V +
Sbjct: 127 AVPTD 131
>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure
pdb|4FMB|D Chain D, Vira-Rab1 Complex Structure
pdb|4FMB|F Chain F, Vira-Rab1 Complex Structure
Length = 171
Score = 122 bits (305), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 55/116 (47%), Positives = 76/116 (65%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
KL+L+GD G GKS L+LRF + E STIG F +T+ ++ T+K +IWDTAGQER
Sbjct: 8 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 67
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADL 127
+ ++ YYRGA I+VYD+T+Q SF K+W+QE+ + N+ L GNK DL
Sbjct: 68 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL 123
>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|B Chain B, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|C Chain C, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
Length = 172
Score = 122 bits (305), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 54/125 (43%), Positives = 84/125 (67%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K+VL+GD G GKS+L+ RF + +F +STIG F ++++ V+ T+K +IWDTAG ER
Sbjct: 10 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLER 69
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
Y ++ YYRGA A++VYDI ++E ++W++EL+ + N+V+ L GNK+DL R
Sbjct: 70 YRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLR 129
Query: 132 KVTAE 136
V +
Sbjct: 130 AVPTD 134
>pdb|4FMC|B Chain B, Espg-Rab1 Complex
pdb|4FMC|D Chain D, Espg-Rab1 Complex
pdb|4FMD|B Chain B, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FMD|D Chain D, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FME|B Chain B, Espg-Rab1-Arf6 Complex
pdb|4FME|E Chain E, Espg-Rab1-Arf6 Complex
Length = 171
Score = 122 bits (305), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 55/116 (47%), Positives = 76/116 (65%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
KL+L+GD G GKS L+LRF + E STIG F +T+ ++ T+K +IWDTAGQER
Sbjct: 8 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 67
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADL 127
+ ++ YYRGA I+VYD+T+Q SF K+W+QE+ + N+ L GNK DL
Sbjct: 68 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL 123
>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex
With Gtpgammas
pdb|1OIX|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp And Pi
Length = 191
Score = 121 bits (304), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 54/125 (43%), Positives = 84/125 (67%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K+VL+GD G GKS+L+ RF + +F +STIG F ++++ V+ T+K +IWDTAG ER
Sbjct: 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLER 90
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
Y ++ YYRGA A++VYDI ++E ++W++EL+ + N+V+ L GNK+DL R
Sbjct: 91 YRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLR 150
Query: 132 KVTAE 136
V +
Sbjct: 151 AVPTD 155
>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With
The Coiled- Coil Domain Of Lida From Legionella
Pneumophila
Length = 196
Score = 121 bits (303), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 56/122 (45%), Positives = 78/122 (63%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
KL+L+GD G GKS L+LRF + E STIG F +T+ ++ T+K +IWDTAGQER
Sbjct: 18 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 77
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
+ ++ YYRGA I+VYD+T+Q SF K+W+QE+ + N+ L GNK DL +
Sbjct: 78 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKK 137
Query: 132 KV 133
V
Sbjct: 138 VV 139
>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp
Length = 191
Score = 121 bits (303), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 55/116 (47%), Positives = 76/116 (65%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
KL+L+GD G GKS L+LRF + E STIG F +T+ ++ T+K +IWDTAGQER
Sbjct: 27 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 86
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADL 127
+ ++ YYRGA I+VYD+T+Q SF K+W+QE+ + N+ L GNK DL
Sbjct: 87 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL 142
>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1
pdb|3L0I|D Chain D, Complex Structure Of Sidm/drra With The Wild Type Rab1
Length = 199
Score = 121 bits (303), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 55/116 (47%), Positives = 76/116 (65%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
KL+L+GD G GKS L+LRF + E STIG F +T+ ++ T+K +IWDTAGQER
Sbjct: 35 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 94
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADL 127
+ ++ YYRGA I+VYD+T+Q SF K+W+QE+ + N+ L GNK DL
Sbjct: 95 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL 150
>pdb|4FMC|F Chain F, Espg-Rab1 Complex
Length = 117
Score = 120 bits (301), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 54/115 (46%), Positives = 75/115 (65%)
Query: 13 LVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERY 72
L+L+GD G GKS L+LRF + E STIG F +T+ ++ T+K +IWDTAGQER+
Sbjct: 1 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 60
Query: 73 HSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADL 127
++ YYRGA I+VYD+T+Q SF K+W+QE+ + N+ L GNK DL
Sbjct: 61 RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL 115
>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In
Complex With The Coiled-Coil Domain Of Lida From
Legionella Pneumophila
Length = 181
Score = 120 bits (301), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 54/116 (46%), Positives = 76/116 (65%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
KL+L+GD G GK+ L+LRF + E STIG F +T+ ++ T+K +IWDTAGQER
Sbjct: 18 KLLLIGDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 77
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADL 127
+ ++ YYRGA I+VYD+T+Q SF K+W+QE+ + N+ L GNK DL
Sbjct: 78 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL 133
>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef
Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA
pdb|3NKV|A Chain A, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|3NKV|B Chain B, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|4HLQ|B Chain B, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|D Chain D, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|F Chain F, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|H Chain H, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|J Chain J, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
Length = 175
Score = 120 bits (300), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 54/116 (46%), Positives = 77/116 (66%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
KL+L+GD G GKS L+LRF + E STIG F +T+ ++ T+K +IWDTAGQER
Sbjct: 11 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 70
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADL 127
+ ++ YYRGA I+VYD+T+Q S+ K+W+QE+ + N+ L GNK+DL
Sbjct: 71 FRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDL 126
>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|C Chain C, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|E Chain E, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|G Chain G, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
Length = 181
Score = 119 bits (299), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 54/116 (46%), Positives = 77/116 (66%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
KL+L+GD G GKS L+LRF + E STIG F +T+ ++ T+K +IWDTAGQER
Sbjct: 11 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 70
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADL 127
+ ++ YYRGA I+VYD+T+Q S+ K+W+QE+ + N+ L GNK+DL
Sbjct: 71 FRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDL 126
>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp
pdb|3RWO|B Chain B, Crystal Structure Of Ypt32 In Complex With Gdp
pdb|3RWO|A Chain A, Crystal Structure Of Ypt32 In Complex With Gdp
Length = 185
Score = 119 bits (298), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 55/125 (44%), Positives = 80/125 (64%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K+VL+GD G GKS+L+ RF +F +STIG F ++T+ V + +K +IWDTAG ER
Sbjct: 12 KIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWDTAGLER 71
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
Y ++ YYRGA A+IVYDI+ +S+E W+ EL+ + N+ + L GNK+DL R
Sbjct: 72 YRAITSAYYRGAVGALIVYDISKSSSYENCNHWLTELRENADDNVAVGLIGNKSDLAHLR 131
Query: 132 KVTAE 136
V +
Sbjct: 132 AVPTD 136
>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex
Length = 206
Score = 118 bits (296), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 56/122 (45%), Positives = 76/122 (62%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
KL+L+G+ G GKS L+LRF + STIG F +T+ ++ TVK +IWDTAGQER
Sbjct: 10 KLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQER 69
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
+ ++ YYRG+ IIVYD+T+Q SF K W+QE+ ++ L GNK DL D R
Sbjct: 70 FRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKR 129
Query: 132 KV 133
V
Sbjct: 130 VV 131
>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With
Prenylated Ypt1 Gtpase
pdb|3CUE|F Chain F, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|L Chain L, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|R Chain R, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|X Chain X, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 206
Score = 118 bits (296), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 56/122 (45%), Positives = 76/122 (62%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
KL+L+G+ G GKS L+LRF + STIG F +T+ ++ TVK +IWDTAGQER
Sbjct: 10 KLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQER 69
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
+ ++ YYRG+ IIVYD+T+Q SF K W+QE+ ++ L GNK DL D R
Sbjct: 70 FRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKR 129
Query: 132 KV 133
V
Sbjct: 130 VV 131
>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|B Chain B, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|C Chain C, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|D Chain D, Gdp-Bound Rab2a Gtpase
Length = 174
Score = 118 bits (295), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 52/125 (41%), Positives = 79/125 (63%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K +++GD G GKS L+L+F +F + TIG F ++ + ++ +K +IWDTAGQE
Sbjct: 12 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQES 71
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
+ S+ YYRGAA A++VYDIT + +F W+++ + N NMV+ L GNK+DL R
Sbjct: 72 FRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRR 131
Query: 132 KVTAE 136
+V E
Sbjct: 132 EVKKE 136
>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1
(Gtpase Domain) Complex
Length = 175
Score = 117 bits (294), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 54/116 (46%), Positives = 75/116 (64%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
KL+L+GD G GKS L+LRF + E STIG F +T+ ++ T+K +IWDTAGQER
Sbjct: 10 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 69
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADL 127
+ ++ YYRGA I+VYD+T+Q SF K+W+QE+ + N+ L G K DL
Sbjct: 70 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGIKCDL 125
>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp
pdb|2HUP|B Chain B, Crystal Structure Of Human Rab43 In Complex With Gdp
Length = 201
Score = 117 bits (294), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 59/127 (46%), Positives = 81/127 (63%), Gaps = 1/127 (0%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
KLVL+GD GK+ +V RF G F E Q STIG F +TL + VK +IWDTAGQER
Sbjct: 31 KLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQER 90
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
+ ++ YYR A AI+ YDIT ++SF W+++++ N+V L GNK+DL + R
Sbjct: 91 FRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELR 150
Query: 132 KVT-AEA 137
+V+ AEA
Sbjct: 151 EVSLAEA 157
>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase
Length = 185
Score = 117 bits (294), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 56/122 (45%), Positives = 76/122 (62%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
KL+L+G+ G GKS L+LRF + STIG F +T+ ++ TVK +IWDTAGQER
Sbjct: 23 KLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQER 82
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
+ ++ YYRG+ IIVYD+T+Q SF K W+QE+ ++ L GNK DL D R
Sbjct: 83 FRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKR 142
Query: 132 KV 133
V
Sbjct: 143 VV 144
>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue
Length = 201
Score = 117 bits (292), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 54/125 (43%), Positives = 80/125 (64%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K+VL+G+ G GK+ LV RF +G F Q +TIG F +T+ +N VK +IWDTAGQER
Sbjct: 28 KIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQER 87
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
+ S+ YYR A A I+ YDIT + SF +W++E++ + ++ L GNK DL + R
Sbjct: 88 FRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERR 147
Query: 132 KVTAE 136
+V+ +
Sbjct: 148 EVSQQ 152
>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase
Length = 179
Score = 115 bits (289), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 53/125 (42%), Positives = 81/125 (64%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K +++GD+G GKS L+ +F + +F+ TIG F ++ + V+ +K +IWDTAGQER
Sbjct: 17 KYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQER 76
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
+ ++ YYRGAA A++VYDIT ++++ W+ + + NPN V+ L GNKADL R
Sbjct: 77 FRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQR 136
Query: 132 KVTAE 136
VT E
Sbjct: 137 DVTYE 141
>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp
pdb|2O52|B Chain B, Crystal Structure Of Human Rab4b In Complex With Gdp
Length = 200
Score = 115 bits (287), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 53/123 (43%), Positives = 80/123 (65%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K +++G G GKS L+ +F++ +F + TIG F S+ + V TVK +IWDTAGQER
Sbjct: 27 KFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQER 86
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
+ S+ YYRGAA A++VYDIT++ ++ W+ + + +PN+V+ L GNK DL R
Sbjct: 87 FRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPER 146
Query: 132 KVT 134
+VT
Sbjct: 147 EVT 149
>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b
Length = 191
Score = 114 bits (286), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 51/125 (40%), Positives = 78/125 (62%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K +++GD G GKS L+L+F +F + TIG F ++ + ++ +K +IWDTAGQE
Sbjct: 23 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQES 82
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
+ S+ YYRGAA A++VYDIT + +F W+++ + + NMV+ L GNK+DL R
Sbjct: 83 FRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRR 142
Query: 132 KVTAE 136
V E
Sbjct: 143 DVKRE 147
>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
pdb|3TSO|B Chain B, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
Length = 178
Score = 114 bits (285), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 52/129 (40%), Positives = 82/129 (63%)
Query: 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTA 67
N K+VL+G+ G GK++L+ RF + +F +TIG F ++T+ + A VK +IWDTA
Sbjct: 8 NFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTA 67
Query: 68 GQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADL 127
G ERY ++ YYRGA A++V+D+T ++ ++W++EL +V+ L GNK+DL
Sbjct: 68 GLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDL 127
Query: 128 LDARKVTAE 136
AR+V E
Sbjct: 128 SQAREVPTE 136
>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp
Length = 193
Score = 114 bits (285), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 52/129 (40%), Positives = 82/129 (63%)
Query: 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTA 67
N K+VL+G+ G GK++L+ RF + +F +TIG F ++T+ + A VK +IWDTA
Sbjct: 23 NFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTA 82
Query: 68 GQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADL 127
G ERY ++ YYRGA A++V+D+T ++ ++W++EL +V+ L GNK+DL
Sbjct: 83 GLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDL 142
Query: 128 LDARKVTAE 136
AR+V E
Sbjct: 143 SQAREVPTE 151
>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
pdb|1G17|B Chain B, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
Length = 170
Score = 114 bits (284), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 54/125 (43%), Positives = 81/125 (64%), Gaps = 1/125 (0%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K++L+GD G GKS L++RFV+ +F +TIG F +T+ +N VK +IWDTAGQER
Sbjct: 5 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQER 64
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
+ ++ YYRGA I+VYDIT++ +F K+W + + N + L GNK+D ++ R
Sbjct: 65 FRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD-METR 123
Query: 132 KVTAE 136
VTA+
Sbjct: 124 VVTAD 128
>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14
Length = 196
Score = 112 bits (281), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 52/125 (41%), Positives = 80/125 (64%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K +++GD+G GKS L+ +F + +F+ TIG F ++ + V+ +K +IWDTAGQ R
Sbjct: 32 KYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQGR 91
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
+ ++ YYRGAA A++VYDIT ++++ W+ + + NPN V+ L GNKADL R
Sbjct: 92 FRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQR 151
Query: 132 KVTAE 136
VT E
Sbjct: 152 DVTYE 156
>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|C Chain C, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|E Chain E, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|G Chain G, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3TNF|A Chain A, Lida From Legionella In Complex With Active Rab8a
Length = 174
Score = 112 bits (280), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 49/125 (39%), Positives = 80/125 (64%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
KL+L+GD G GK+ ++ RF + F STIG F +T+ ++ +K +IWDTAGQER
Sbjct: 8 KLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQER 67
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
+ ++ YYRGA ++VYDITN+ SF+ + W++ ++ + ++ + GNK D+ D R
Sbjct: 68 FRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKR 127
Query: 132 KVTAE 136
+V+ E
Sbjct: 128 QVSKE 132
>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp
pdb|1G16|B Chain B, Crystal Structure Of Sec4-Gdp
pdb|1G16|C Chain C, Crystal Structure Of Sec4-Gdp
pdb|1G16|D Chain D, Crystal Structure Of Sec4-Gdp
Length = 170
Score = 112 bits (280), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 54/125 (43%), Positives = 80/125 (64%), Gaps = 1/125 (0%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K++L+GD G GKS L++RFV+ +F +TIG F +T+ +N VK +IWDTAGQER
Sbjct: 5 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQER 64
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
+ ++ YYRGA I+VYDIT++ +F K+W + + N + L GNK+D + R
Sbjct: 65 FRTITTAYYRGAXGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD-XETR 123
Query: 132 KVTAE 136
VTA+
Sbjct: 124 VVTAD 128
>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4
pdb|2FU5|D Chain D, Structure Of Rab8 In Complex With Mss4
Length = 183
Score = 112 bits (280), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 49/125 (39%), Positives = 80/125 (64%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
KL+L+GD G GK+ ++ RF + F STIG F +T+ ++ +K +IWDTAGQER
Sbjct: 10 KLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQER 69
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
+ ++ YYRGA ++VYDITN+ SF+ + W++ ++ + ++ + GNK D+ D R
Sbjct: 70 FRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKR 129
Query: 132 KVTAE 136
+V+ E
Sbjct: 130 QVSKE 134
>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi
Length = 213
Score = 112 bits (279), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 52/125 (41%), Positives = 81/125 (64%), Gaps = 1/125 (0%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K++L+GD G GKS L++RFV+ +F +TIG F +T+ +N VK ++WDTAGQER
Sbjct: 22 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQER 81
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
+ ++ YYRGA I+VYD+T++ +F K+W + + N + L GNK+D ++ R
Sbjct: 82 FRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD-METR 140
Query: 132 KVTAE 136
VTA+
Sbjct: 141 VVTAD 145
>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef
Domain, And Phosphate Complex
Length = 174
Score = 112 bits (279), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 52/125 (41%), Positives = 81/125 (64%), Gaps = 1/125 (0%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K++L+GD G GKS L++RFV+ +F +TIG F +T+ +N VK ++WDTAGQER
Sbjct: 9 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQER 68
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
+ ++ YYRGA I+VYD+T++ +F K+W + + N + L GNK+D ++ R
Sbjct: 69 FRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD-METR 127
Query: 132 KVTAE 136
VTA+
Sbjct: 128 VVTAD 132
>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution
pdb|1KY3|A Chain A, Gdp-Bound Ypt7p At 1.35 A Resolution
Length = 182
Score = 110 bits (276), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 55/141 (39%), Positives = 86/141 (60%), Gaps = 6/141 (4%)
Query: 3 TTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVN-DATVKF 61
++ KNI K+++LGD G GK+SL+ R+V ++ + ++TIGA F ++ + V+ D
Sbjct: 2 SSRKKNI-LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATM 60
Query: 62 EIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPN----MV 117
++WDTAGQER+ SL +YRGA ++VYD+TN +SFE K W E N N
Sbjct: 61 QVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFP 120
Query: 118 MALAGNKADLLDARKVTAEAS 138
+ GNK D +++K+ +E S
Sbjct: 121 FVILGNKIDAEESKKIVSEKS 141
>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab
Gtpase Sec4p
Length = 170
Score = 110 bits (276), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 52/125 (41%), Positives = 80/125 (64%), Gaps = 1/125 (0%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K++L+GD G GKS L++RFV+ +F +TIG F +T+ +N VK ++WDTAGQER
Sbjct: 5 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQER 64
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
+ ++ YYRGA I+VYD+T++ +F K+W + + N + L GNK+D + R
Sbjct: 65 FRTITTAYYRGAXGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD-XETR 123
Query: 132 KVTAE 136
VTA+
Sbjct: 124 VVTAD 128
>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
pdb|3TW8|D Chain D, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
Length = 181
Score = 108 bits (271), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 53/125 (42%), Positives = 75/125 (60%), Gaps = 1/125 (0%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
KL+++GD G GKSSL+LRF F +TIG F +T+ +N VK +IWDTAGQER
Sbjct: 11 KLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQER 70
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
+ ++ YYRG I+VYD+T+ SF K+W+ E+ Q ++ L GNK D + +
Sbjct: 71 FRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEIN-QNCDDVCRILVGNKNDDPERK 129
Query: 132 KVTAE 136
V E
Sbjct: 130 VVETE 134
>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a
pdb|2BME|A Chain A, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|B Chain B, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|C Chain C, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|D Chain D, High Resolution Structure Of Gppnhp-Bound Human Rab4a
Length = 186
Score = 108 bits (270), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 51/123 (41%), Positives = 79/123 (64%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K +++G+ G GKS L+ +F++ +F + TIG F S+ + V VK +IWDTAGQER
Sbjct: 12 KFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQER 71
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
+ S+ YYRGAA A++VYDIT++ ++ W+ + + + N+V+ L GNK DL R
Sbjct: 72 FRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADR 131
Query: 132 KVT 134
+VT
Sbjct: 132 EVT 134
>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a
Length = 175
Score = 108 bits (269), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 51/123 (41%), Positives = 79/123 (64%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K +++G+ G GKS L+ +F++ +F + TIG F S+ + V VK +IWDTAGQER
Sbjct: 13 KFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQER 72
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
+ S+ YYRGAA A++VYDIT++ ++ W+ + + + N+V+ L GNK DL R
Sbjct: 73 FRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADR 132
Query: 132 KVT 134
+VT
Sbjct: 133 EVT 135
>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum,
Pfb0500c
Length = 208
Score = 107 bits (268), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 57/152 (37%), Positives = 77/152 (50%), Gaps = 39/152 (25%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAV----------------- 54
K VLLG+ GKSS+VLR K F E +TIGA+F + + +
Sbjct: 9 KTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNI 68
Query: 55 --------------------NDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITN 94
N +KF+IWDTAGQERY S+ P+YYRGA AI+V+DI+N
Sbjct: 69 NSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISN 128
Query: 95 QASFERAKKWVQELQAQGNPNMVMALAGNKAD 126
+ +RAK WV +L+ N ++ L NK D
Sbjct: 129 SNTLDRAKTWVNQLKISS--NYIIILVANKID 158
>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution
Length = 169
Score = 107 bits (267), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 49/125 (39%), Positives = 75/125 (60%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K++++G+ GK+S + R+ F ST+G F +T+ ND +K +IWDTAGQER
Sbjct: 7 KILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQER 66
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
Y ++ YYRGA I++YDITN+ SF + W +++ N + L GNK D+ D R
Sbjct: 67 YRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDER 126
Query: 132 KVTAE 136
V++E
Sbjct: 127 VVSSE 131
>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp
Length = 195
Score = 106 bits (264), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 51/116 (43%), Positives = 72/116 (62%), Gaps = 1/116 (0%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K++++G+ G GKSSL+LRF F +TIG F +T++V+ K IWDTAGQER
Sbjct: 17 KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQER 76
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPN-MVMALAGNKAD 126
+ +L P YYRGA I+VYD+T + +F + W+ EL+ N +V L GNK D
Sbjct: 77 FRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNXLVGNKID 132
>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
pdb|1Z0K|C Chain C, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
Length = 172
Score = 105 bits (262), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 50/123 (40%), Positives = 78/123 (63%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K +++G+ G GKS L+ +F++ +F + TIG F S+ + V VK +IWDTAG ER
Sbjct: 10 KFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGLER 69
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
+ S+ YYRGAA A++VYDIT++ ++ W+ + + + N+V+ L GNK DL R
Sbjct: 70 FRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADR 129
Query: 132 KVT 134
+VT
Sbjct: 130 EVT 132
>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp
Length = 189
Score = 105 bits (262), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 51/125 (40%), Positives = 73/125 (58%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
KL+L+G+ GK+S + R+ F ST+G F +T+ +D +K +IWDTAGQER
Sbjct: 24 KLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQER 83
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
Y ++ YYRGA +++YDI NQ SF + W +++ N + L GNK DL D R
Sbjct: 84 YRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDER 143
Query: 132 KVTAE 136
V AE
Sbjct: 144 VVPAE 148
>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp
Analogue
Length = 180
Score = 104 bits (260), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 51/130 (39%), Positives = 80/130 (61%), Gaps = 1/130 (0%)
Query: 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQE-STIGAAFFSQTLAVNDATVKFEIWDT 66
++ K++L+GD G GK+ L++RF G F+ ST+G F ++ L V+ VK ++WDT
Sbjct: 8 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDT 67
Query: 67 AGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKAD 126
AGQER+ S+ YYR A A +++YD+TN+ASF+ + W+ E+ ++ + L GNK D
Sbjct: 68 AGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVD 127
Query: 127 LLDARKVTAE 136
R V E
Sbjct: 128 SAHERVVKRE 137
>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With Monoprenylated Rab7 Protein
pdb|1VG8|A Chain A, Gppnhp-Bound Rab7
pdb|1VG8|B Chain B, Gppnhp-Bound Rab7
pdb|1VG8|C Chain C, Gppnhp-Bound Rab7
pdb|1VG8|D Chain D, Gppnhp-Bound Rab7
Length = 207
Score = 103 bits (258), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 52/138 (37%), Positives = 80/138 (57%), Gaps = 4/138 (2%)
Query: 4 TGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEI 63
T K + K+++LGD G GK+SL+ ++V +F ++TIGA F ++ + V+D V +I
Sbjct: 2 TSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQI 61
Query: 64 WDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNP----NMVMA 119
WDTAGQER+ SL +YRGA ++V+D+T +F+ W E Q +P N
Sbjct: 62 WDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFV 121
Query: 120 LAGNKADLLDARKVTAEA 137
+ GNK DL + + T A
Sbjct: 122 VLGNKIDLENRQVATKRA 139
>pdb|1VG1|A Chain A, Gdp-bound Rab7
pdb|1VG9|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|D Chain D, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|F Chain F, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|H Chain H, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
Length = 185
Score = 103 bits (258), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 52/138 (37%), Positives = 80/138 (57%), Gaps = 4/138 (2%)
Query: 4 TGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEI 63
T K + K+++LGD G GK+SL+ ++V +F ++TIGA F ++ + V+D V +I
Sbjct: 2 TSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQI 61
Query: 64 WDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNP----NMVMA 119
WDTAGQER+ SL +YRGA ++V+D+T +F+ W E Q +P N
Sbjct: 62 WDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFV 121
Query: 120 LAGNKADLLDARKVTAEA 137
+ GNK DL + + T A
Sbjct: 122 VLGNKIDLENRQVATKRA 139
>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp
Length = 191
Score = 103 bits (257), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 50/132 (37%), Positives = 76/132 (57%)
Query: 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIW 64
GN + KL+++G+ GK+S + R+ F ST+G F +T+ ++ VK +IW
Sbjct: 18 GNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIW 77
Query: 65 DTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNK 124
DTAGQERY ++ YYRGA I++YDITN+ SF + W +++ N + L GNK
Sbjct: 78 DTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNK 137
Query: 125 ADLLDARKVTAE 136
D+ + R V E
Sbjct: 138 CDMEEERVVPTE 149
>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|B Chain B, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|C Chain C, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|D Chain D, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|E Chain E, Structure Of Gtp-Bound L129f Mutant Rab7
Length = 207
Score = 102 bits (254), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 51/138 (36%), Positives = 79/138 (57%), Gaps = 4/138 (2%)
Query: 4 TGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEI 63
T K + K+++LGD G GK+SL+ ++V +F ++TIGA F ++ + V+D V +I
Sbjct: 2 TSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQI 61
Query: 64 WDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNP----NMVMA 119
WDTAGQER+ SL +YRGA ++V+D+T +F+ W E Q +P N
Sbjct: 62 WDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFV 121
Query: 120 LAGNKADLLDARKVTAEA 137
+ GNK D + + T A
Sbjct: 122 VLGNKIDFENRQVATKRA 139
>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex
With Gdp
Length = 192
Score = 102 bits (253), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 45/129 (34%), Positives = 77/129 (59%)
Query: 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTA 67
+ +++++G G GK+SL+ RF F E +ST+G F +T+ + ++ +IWDTA
Sbjct: 24 DFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTA 83
Query: 68 GQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADL 127
GQER++S+ YYR A I+VYDIT + +F+ KW++ + + + + L GNK D
Sbjct: 84 GQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDC 143
Query: 128 LDARKVTAE 136
R++T +
Sbjct: 144 ETDREITRQ 152
>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal
Structure Of The Small G Protein Rab3a Complexed With
The Effector Domain Of Rabphilin-3a
Length = 203
Score = 102 bits (253), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 48/125 (38%), Positives = 72/125 (57%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K++++G+ GK+S + R+ F ST+G F +T+ ND +K +IWDTAG ER
Sbjct: 10 KILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLER 69
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
Y ++ YYRGA I+ YDITN+ SF + W +++ N + L GNK D D R
Sbjct: 70 YRTITTAYYRGAXGFILXYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDXEDER 129
Query: 132 KVTAE 136
V++E
Sbjct: 130 VVSSE 134
>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|B Chain B, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|C Chain C, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|D Chain D, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1YHN|A Chain A, Structure Basis Of Rilp Recruitment By Rab7
Length = 207
Score = 101 bits (251), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 51/138 (36%), Positives = 79/138 (57%), Gaps = 4/138 (2%)
Query: 4 TGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEI 63
T K + K+++LGD G GK+SL+ ++V +F ++TIGA F ++ + V+D V +I
Sbjct: 2 TSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQI 61
Query: 64 WDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNP----NMVMA 119
WDTAG ER+ SL +YRGA ++V+D+T +F+ W E Q +P N
Sbjct: 62 WDTAGLERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFV 121
Query: 120 LAGNKADLLDARKVTAEA 137
+ GNK DL + + T A
Sbjct: 122 VLGNKIDLENRQVATKRA 139
>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp
pdb|2P5S|B Chain B, Rab Domain Of Human Rasef In Complex With Gdp
Length = 199
Score = 100 bits (249), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 46/118 (38%), Positives = 72/118 (61%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K+VL GD GKSS ++R K +F E +T+G F +TL V+ ++WDTAGQER
Sbjct: 30 KIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQER 89
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLD 129
+ S+A Y+R A +++YD+T + SF ++WV ++ + + + L GNKAD+ D
Sbjct: 90 FRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRD 147
>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase
Length = 189
Score = 100 bits (249), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 49/138 (35%), Positives = 78/138 (56%), Gaps = 2/138 (1%)
Query: 1 MATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVK 60
+ G+++ K++++GD GK+ L RF G+F + E+TIG F + + ++ +K
Sbjct: 11 LVPRGSRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIK 70
Query: 61 FEIWDTAGQERYH-SLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMV-M 118
++WDTAGQER+ S+ YYR A + VYD+TN ASF W++E + N +
Sbjct: 71 IQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPR 130
Query: 119 ALAGNKADLLDARKVTAE 136
L GNK DL A +V +
Sbjct: 131 ILVGNKCDLRSAIQVPTD 148
>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group
pdb|1Z2A|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In P2(1)2(1)2(1) Space
Group
Length = 168
Score = 99.0 bits (245), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 47/118 (39%), Positives = 74/118 (62%), Gaps = 1/118 (0%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K+V++G+ GKSS++ R+ KG F + + TIG F + + VND V+ +WDTAGQE
Sbjct: 7 KMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEE 66
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLD 129
+ ++ YYRGA A ++V+ T++ SFE W +++ A+ ++ AL NK DLLD
Sbjct: 67 FDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVG-DIPTALVQNKIDLLD 123
>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33
Gtpase Bound To Gdp And Alf3
Length = 198
Score = 99.0 bits (245), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 48/127 (37%), Positives = 72/127 (56%), Gaps = 2/127 (1%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K++++GD GK+ L RF G+F + E+TIG F + + ++ +K ++WDTAGQER
Sbjct: 31 KIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQER 90
Query: 72 YH-SLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPN-MVMALAGNKADLLD 129
+ S+ YYR A + VYD TN ASF W++E + N + L GNK DL
Sbjct: 91 FRKSMVQHYYRNVHAVVFVYDXTNXASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRS 150
Query: 130 ARKVTAE 136
A +V +
Sbjct: 151 AIQVPTD 157
>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant
pdb|1QG4|B Chain B, Canine Gdp-Ran F72y Mutant
Length = 216
Score = 98.6 bits (244), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 51/139 (36%), Positives = 80/139 (57%), Gaps = 2/139 (1%)
Query: 1 MATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVK 60
MA G + KLVL+GD G GK++ V R + G+F + +T+G N +K
Sbjct: 1 MAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIK 60
Query: 61 FEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMAL 120
F +WDTAGQE+Y L YY A AII++D+T++ +++ W ++L + N+ + L
Sbjct: 61 FNVWDTAGQEKYGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVL 119
Query: 121 AGNKADLLDARKVTAEASI 139
GNK D+ D RKV A++ +
Sbjct: 120 CGNKVDIKD-RKVKAKSIV 137
>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant
Length = 216
Score = 97.4 bits (241), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 50/139 (35%), Positives = 80/139 (57%), Gaps = 2/139 (1%)
Query: 1 MATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVK 60
MA G + KLVL+GD G GK++ V R + G+F + +T+G N +K
Sbjct: 1 MAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIK 60
Query: 61 FEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMAL 120
F +WDTAGQE++ L YY A AII++D+T++ +++ W ++L + N+ + L
Sbjct: 61 FNVWDTAGQEKFGGLEDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVL 119
Query: 121 AGNKADLLDARKVTAEASI 139
GNK D+ D RKV A++ +
Sbjct: 120 CGNKVDIKD-RKVKAKSIV 137
>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
pdb|3EA5|C Chain C, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
Length = 216
Score = 97.1 bits (240), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 50/139 (35%), Positives = 80/139 (57%), Gaps = 2/139 (1%)
Query: 1 MATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVK 60
MA G + KLVL+GD G GK++ V R + G+F + +T+G N +K
Sbjct: 1 MAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIK 60
Query: 61 FEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMAL 120
F +WDTAGQE++ L YY A AII++D+T++ +++ W ++L + N+ + L
Sbjct: 61 FNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVL 119
Query: 121 AGNKADLLDARKVTAEASI 139
GNK D+ D RKV A++ +
Sbjct: 120 CGNKVDIKD-RKVKAKSIV 137
>pdb|2BKU|A Chain A, Kap95p:rangtp Complex
pdb|2BKU|C Chain C, Kap95p:rangtp Complex
Length = 177
Score = 97.1 bits (240), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 50/139 (35%), Positives = 79/139 (56%), Gaps = 2/139 (1%)
Query: 1 MATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVK 60
MA G + KLVL+GD G GK++ V R + G+F + T+G N +K
Sbjct: 1 MAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIK 60
Query: 61 FEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMAL 120
F +WDTAGQE++ L YY A AII++D+T++ +++ W ++L + N+ + L
Sbjct: 61 FNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVL 119
Query: 121 AGNKADLLDARKVTAEASI 139
GNK D+ D RKV A++ +
Sbjct: 120 CGNKVDIKD-RKVKAKSIV 137
>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 176
Score = 97.1 bits (240), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 50/139 (35%), Positives = 80/139 (57%), Gaps = 2/139 (1%)
Query: 1 MATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVK 60
MA G + KLVL+GD G GK++ V R + G+F + +T+G N +K
Sbjct: 1 MAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIK 60
Query: 61 FEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMAL 120
F +WDTAGQE++ L YY A AII++D+T++ +++ W ++L + N+ + L
Sbjct: 61 FNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVL 119
Query: 121 AGNKADLLDARKVTAEASI 139
GNK D+ D RKV A++ +
Sbjct: 120 CGNKVDIKD-RKVKAKSIV 137
>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex
pdb|1A2K|D Chain D, Gdpran-Ntf2 Complex
pdb|1A2K|E Chain E, Gdpran-Ntf2 Complex
pdb|1IBR|A Chain A, Complex Of Ran With Importin Beta
pdb|1IBR|C Chain C, Complex Of Ran With Importin Beta
pdb|1I2M|A Chain A, Ran-Rcc1-So4 Complex
pdb|1I2M|C Chain C, Ran-Rcc1-So4 Complex
pdb|1K5D|A Chain A, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|D Chain D, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|G Chain G, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|J Chain J, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|A Chain A, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|D Chain D, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|G Chain G, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|J Chain J, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|3CH5|A Chain A, The Crystal Structure Of The Rangdp-Nup153znf2 Complex
pdb|3A6P|C Chain C, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|3A6P|H Chain H, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|4GPT|A Chain A, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
pdb|4GMX|A Chain A, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
pdb|4HAT|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1- Ran-ranbp1
pdb|4HAV|A Chain A, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
pdb|4HAW|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
pdb|4HAX|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1(k579a)-ran-ranbp1
pdb|4HAY|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
pdb|4HAZ|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
pdb|4HB0|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
pdb|4HB2|A Chain A, Crystal Structure Of Crm1-ran-ranbp1
pdb|4HB3|A Chain A, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
pdb|4HB4|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 216
Score = 97.1 bits (240), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 50/139 (35%), Positives = 80/139 (57%), Gaps = 2/139 (1%)
Query: 1 MATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVK 60
MA G + KLVL+GD G GK++ V R + G+F + +T+G N +K
Sbjct: 1 MAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIK 60
Query: 61 FEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMAL 120
F +WDTAGQE++ L YY A AII++D+T++ +++ W ++L + N+ + L
Sbjct: 61 FNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVL 119
Query: 121 AGNKADLLDARKVTAEASI 139
GNK D+ D RKV A++ +
Sbjct: 120 CGNKVDIKD-RKVKAKSIV 137
>pdb|1BYU|A Chain A, Canine Gdp-Ran
pdb|1BYU|B Chain B, Canine Gdp-Ran
Length = 216
Score = 97.1 bits (240), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 50/139 (35%), Positives = 79/139 (56%), Gaps = 2/139 (1%)
Query: 1 MATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVK 60
MA G + KLVL+GD G GK++ V R + G+F + T+G N +K
Sbjct: 1 MAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIK 60
Query: 61 FEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMAL 120
F +WDTAGQE++ L YY A AII++D+T++ +++ W ++L + N+ + L
Sbjct: 61 FNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVL 119
Query: 121 AGNKADLLDARKVTAEASI 139
GNK D+ D RKV A++ +
Sbjct: 120 CGNKVDIKD-RKVKAKSIV 137
>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 216
Score = 96.3 bits (238), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 50/139 (35%), Positives = 79/139 (56%), Gaps = 2/139 (1%)
Query: 1 MATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVK 60
MA G + KLVL+GD G GK++ V R + G+F + +T+G N +K
Sbjct: 1 MAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIK 60
Query: 61 FEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMAL 120
F +WDTAGQE++ L YY A AII +D+T++ +++ W ++L + N+ + L
Sbjct: 61 FNVWDTAGQEKFGGLRDGYYIQAQCAIIXFDVTSRVTYKNVPNWHRDL-VRVCENIPIVL 119
Query: 121 AGNKADLLDARKVTAEASI 139
GNK D+ D RKV A++ +
Sbjct: 120 CGNKVDIKD-RKVKAKSIV 137
>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp
pdb|3GJ0|B Chain B, Crystal Structure Of Human Rangdp
pdb|3GJ3|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf2 Complex
Length = 221
Score = 94.7 bits (234), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 49/138 (35%), Positives = 79/138 (57%), Gaps = 2/138 (1%)
Query: 2 ATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKF 61
A G + KLVL+GD G GK++ V R + G+F + +T+G N +KF
Sbjct: 7 AAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKF 66
Query: 62 EIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALA 121
+WDTAGQE++ L YY A AII++D+T++ +++ W ++L + N+ + L
Sbjct: 67 NVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLC 125
Query: 122 GNKADLLDARKVTAEASI 139
GNK D+ D RKV A++ +
Sbjct: 126 GNKVDIKD-RKVKAKSIV 142
>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex
Length = 182
Score = 94.4 bits (233), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 49/139 (35%), Positives = 79/139 (56%), Gaps = 2/139 (1%)
Query: 1 MATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVK 60
MA G + KLVL+GD G GK++ V R + G+F + +T+G N +K
Sbjct: 3 MAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIK 62
Query: 61 FEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMAL 120
F +WDTAG E++ L YY A AII++D+T++ +++ W ++L + N+ + L
Sbjct: 63 FNVWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVL 121
Query: 121 AGNKADLLDARKVTAEASI 139
GNK D+ D RKV A++ +
Sbjct: 122 CGNKVDIKD-RKVKAKSIV 139
>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|C Chain C, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|D Chain D, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|B Chain B, Canine Gdp-Ran Q69l Mutant
pdb|3GJX|C Chain C, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3GJX|F Chain F, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
Length = 216
Score = 94.0 bits (232), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 49/139 (35%), Positives = 79/139 (56%), Gaps = 2/139 (1%)
Query: 1 MATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVK 60
MA G + KLVL+GD G GK++ V R + G+F + +T+G N +K
Sbjct: 1 MAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIK 60
Query: 61 FEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMAL 120
F +WDTAG E++ L YY A AII++D+T++ +++ W ++L + N+ + L
Sbjct: 61 FNVWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVL 119
Query: 121 AGNKADLLDARKVTAEASI 139
GNK D+ D RKV A++ +
Sbjct: 120 CGNKVDIKD-RKVKAKSIV 137
>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp
Analogue
Length = 180
Score = 94.0 bits (232), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 50/135 (37%), Positives = 74/135 (54%), Gaps = 4/135 (2%)
Query: 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDT 66
K++ K++LLGD G GKSSL+ R+V +F TIG F ++ L V+ V +IWDT
Sbjct: 4 KSLLLKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDT 63
Query: 67 AGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQEL----QAQGNPNMVMALAG 122
AGQER+ SL +YRGA ++ + + ++ SFE W +E + + + G
Sbjct: 64 AGQERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFVVLG 123
Query: 123 NKADLLDARKVTAEA 137
NK D D + T EA
Sbjct: 124 NKVDKEDRQVTTEEA 138
>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex
pdb|1RRP|C Chain C, Structure Of The Ran-Gppnhp-Ranbd1 Complex
Length = 204
Score = 92.0 bits (227), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 77/131 (58%), Gaps = 2/131 (1%)
Query: 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAG 68
+ KLVL+GD G GK++ V R + G+F + +T+G N +KF +WDTAG
Sbjct: 2 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAG 61
Query: 69 QERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLL 128
QE++ L YY A AII++D+T++ +++ W ++L + N+ + L GNK D+
Sbjct: 62 QEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIK 120
Query: 129 DARKVTAEASI 139
D RKV A++ +
Sbjct: 121 D-RKVKAKSIV 130
>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ4|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ5|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ5|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ6|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf1 Complex
pdb|3GJ7|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ7|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ8|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
pdb|3GJ8|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
Length = 221
Score = 91.3 bits (225), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 78/138 (56%), Gaps = 2/138 (1%)
Query: 2 ATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKF 61
A G + KLVL+GD G GK++ V R + G+ + +T+G N +KF
Sbjct: 7 AAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGESEKKYVATLGVEVHPLVFHTNRGPIKF 66
Query: 62 EIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALA 121
+WDTAGQE++ L YY A AII++D+T++ +++ W ++L + N+ + L
Sbjct: 67 NVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLC 125
Query: 122 GNKADLLDARKVTAEASI 139
GNK D+ D RKV A++ +
Sbjct: 126 GNKVDIKD-RKVKAKSIV 142
>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBY|F Chain F, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBZ|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NBZ|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NC0|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
pdb|3NC0|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
Length = 176
Score = 91.3 bits (225), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 77/135 (57%), Gaps = 2/135 (1%)
Query: 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIW 64
G + KLVL+GD G GK++ V R + G+F + +T+G N +KF +W
Sbjct: 1 GEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVW 60
Query: 65 DTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNK 124
DTAG E++ L YY A AII++D+T++ +++ W ++L + N+ + L GNK
Sbjct: 61 DTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNK 119
Query: 125 ADLLDARKVTAEASI 139
D+ D RKV A++ +
Sbjct: 120 VDIKD-RKVKAKSIV 133
>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp
pdb|2F7S|B Chain B, The Crystal Structure Of Human Rab27b Bound To Gdp
Length = 217
Score = 90.1 bits (222), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 50/143 (34%), Positives = 80/143 (55%), Gaps = 15/143 (10%)
Query: 4 TGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDA------ 57
+G+ + KL+ LGD G GK++ + R+ +F +T+G F + + N
Sbjct: 19 SGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSS 78
Query: 58 ----TVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQG- 112
V ++WDTAGQER+ SL ++R A ++++D+T+Q SF + W+ +LQA
Sbjct: 79 GKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAY 138
Query: 113 --NPNMVMALAGNKADLLDARKV 133
NP++V L GNKADL D R+V
Sbjct: 139 CENPDIV--LIGNKADLPDQREV 159
>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase
Length = 179
Score = 89.7 bits (221), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 71/130 (54%), Gaps = 4/130 (3%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K++LLGD G GKSSL+ R+V +F TIG F ++ L V+ V +IWDTAGQER
Sbjct: 13 KIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQER 72
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQEL----QAQGNPNMVMALAGNKADL 127
+ SL +YRG+ ++ + + + SF+ W +E + + + GNK D+
Sbjct: 73 FRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKTDI 132
Query: 128 LDARKVTAEA 137
+ + T EA
Sbjct: 133 KERQVSTEEA 142
>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
pdb|1WMS|B Chain B, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
Length = 177
Score = 88.6 bits (218), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 71/130 (54%), Gaps = 4/130 (3%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K++LLGD G GKSSL+ R+V +F TIG F ++ L V+ V +IWDTAGQER
Sbjct: 9 KVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQER 68
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQEL----QAQGNPNMVMALAGNKADL 127
+ SL +YRG+ ++ + + + SF+ W +E + + + GNK D+
Sbjct: 69 FRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDI 128
Query: 128 LDARKVTAEA 137
+ + T EA
Sbjct: 129 SERQVSTEEA 138
>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
pdb|1S8F|B Chain B, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
Length = 177
Score = 88.6 bits (218), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 71/130 (54%), Gaps = 4/130 (3%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K++LLGD G GKSSL+ R+V +F TIG F ++ L V+ V +IWDTAGQER
Sbjct: 11 KVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQER 70
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQEL----QAQGNPNMVMALAGNKADL 127
+ SL +YRG+ ++ + + + SF+ W +E + + + GNK D+
Sbjct: 71 FRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDI 130
Query: 128 LDARKVTAEA 137
+ + T EA
Sbjct: 131 SERQVSTEEA 140
>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IF0|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 200
Score = 87.8 bits (216), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 79/144 (54%), Gaps = 15/144 (10%)
Query: 3 TTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDA----- 57
T G+ + KL+ LGD G GK++ + R+ +F +T+G F + + +
Sbjct: 4 TDGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGA 63
Query: 58 -----TVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQG 112
V ++WDTAG ER+ SL ++R A ++++D+T+Q SF + W+ +LQA
Sbjct: 64 SGKAFKVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANA 123
Query: 113 ---NPNMVMALAGNKADLLDARKV 133
NP++V L GNKADL D R+V
Sbjct: 124 YCENPDIV--LIGNKADLPDQREV 145
>pdb|3ICQ|B Chain B, Karyopherin Nuclear State
pdb|3ICQ|C Chain C, Karyopherin Nuclear State
Length = 171
Score = 87.4 bits (215), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 46/126 (36%), Positives = 75/126 (59%), Gaps = 2/126 (1%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
KLVL+GD G GK++ V R + G+F + +TIG + N +KF++WDTAG E+
Sbjct: 6 KLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLEK 65
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
+ L YY A AII++D+T++ +++ W ++L + N+ + L GNK D+ + R
Sbjct: 66 FGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDL-VRVCENIPIVLCGNKVDVKE-R 123
Query: 132 KVTAEA 137
KV A+
Sbjct: 124 KVKAKT 129
>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex
Length = 172
Score = 87.4 bits (215), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 46/126 (36%), Positives = 75/126 (59%), Gaps = 2/126 (1%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
KLVL+GD G GK++ V R + G+F + +TIG + N +KF++WDTAG E+
Sbjct: 7 KLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLEK 66
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
+ L YY A AII++D+T++ +++ W ++L + N+ + L GNK D+ + R
Sbjct: 67 FGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDL-VRVCENIPIVLCGNKVDVKE-R 124
Query: 132 KVTAEA 137
KV A+
Sbjct: 125 KVKAKT 130
>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With
Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp)
Length = 219
Score = 87.0 bits (214), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 46/125 (36%), Positives = 75/125 (60%), Gaps = 2/125 (1%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
KLVL+GD G GK++ V R + G+F + +TIG + N +KF++WDTAG E+
Sbjct: 14 KLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLEK 73
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
+ L YY A AII++D+T++ +++ W ++L + N+ + L GNK D+ + R
Sbjct: 74 FGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDL-VRVCENIPIVLCGNKVDVKE-R 131
Query: 132 KVTAE 136
KV A+
Sbjct: 132 KVKAK 136
>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|H Chain H, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|I Chain I, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 220
Score = 87.0 bits (214), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 79/144 (54%), Gaps = 15/144 (10%)
Query: 3 TTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDA----- 57
T G+ + KL+ LGD G GK++ + R+ +F +T+G F + + +
Sbjct: 4 TDGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGA 63
Query: 58 -----TVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQG 112
V ++WDTAG ER+ SL ++R A ++++D+T+Q SF + W+ +LQA
Sbjct: 64 SGKAFKVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANA 123
Query: 113 ---NPNMVMALAGNKADLLDARKV 133
NP++V L GNKADL D R+V
Sbjct: 124 YCENPDIV--LIGNKADLPDQREV 145
>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
pdb|2IEY|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
Length = 195
Score = 85.9 bits (211), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 77/144 (53%), Gaps = 15/144 (10%)
Query: 3 TTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDA----- 57
T G+ + KL+ LGD G GK++ + R+ +F +T+G F + + +
Sbjct: 4 TDGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGA 63
Query: 58 -----TVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQG 112
V ++WDTAG ER+ SL ++R A ++ +D+T+Q SF + W +LQA
Sbjct: 64 SGKAFKVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANA 123
Query: 113 ---NPNMVMALAGNKADLLDARKV 133
NP++V L GNKADL D R+V
Sbjct: 124 YCENPDIV--LIGNKADLPDQREV 145
>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
pdb|2ZET|B Chain B, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
Length = 203
Score = 85.9 bits (211), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 77/144 (53%), Gaps = 15/144 (10%)
Query: 3 TTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDA----- 57
T G+ + KL+ LGD G GK++ + R+ +F +T+G F + + +
Sbjct: 4 TDGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGA 63
Query: 58 -----TVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQG 112
V ++WDTAG ER+ SL ++R A ++ +D+T+Q SF + W +LQA
Sbjct: 64 SGKAFKVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANA 123
Query: 113 ---NPNMVMALAGNKADLLDARKV 133
NP++V L GNKADL D R+V
Sbjct: 124 YCENPDIV--LIGNKADLPDQREV 145
>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a
pdb|3BC1|E Chain E, Crystal Structure Of The Complex Rab27a-slp2a
Length = 195
Score = 85.5 bits (210), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 78/147 (53%), Gaps = 15/147 (10%)
Query: 3 TTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVN------- 55
+ G+ + K + LGD G GK+S++ ++ G+F +T+G F + +
Sbjct: 4 SDGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGA 63
Query: 56 ---DATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQG 112
+ ++WDTAG ER+ SL ++R A ++++D+TN+ SF + W+ +LQ
Sbjct: 64 VGRGQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHA 123
Query: 113 ---NPNMVMALAGNKADLLDARKVTAE 136
NP++V L GNK+DL D R V E
Sbjct: 124 YSENPDIV--LCGNKSDLEDQRAVKEE 148
>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
pdb|4DJT|B Chain B, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
Length = 218
Score = 84.7 bits (208), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 75/129 (58%), Gaps = 1/129 (0%)
Query: 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATV-KFEIWD 65
+ + K+ L+GD G GK++ + R + G+F + +T+GA T + V KF +WD
Sbjct: 8 RELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWD 67
Query: 66 TAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKA 125
TAGQE+ L +YY GA+ AI+ +D+T++ + + +WV+E QA + + NK
Sbjct: 68 TAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKI 127
Query: 126 DLLDARKVT 134
D+ + +K++
Sbjct: 128 DIKNRQKIS 136
>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5
Length = 182
Score = 84.3 bits (207), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 46/122 (37%), Positives = 69/122 (56%), Gaps = 3/122 (2%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K V +GD GK+ L++ + F T+ F S + VN ATV +WDTAGQE
Sbjct: 10 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGATVNLGLWDTAGQED 68
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFER-AKKWVQELQAQGNPNMVMALAGNKADLLDA 130
Y+ L P+ YRGA I+ + + ++AS+E +KKW+ EL+ P + + L G K DL D
Sbjct: 69 YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIVLVGTKLDLRDD 127
Query: 131 RK 132
++
Sbjct: 128 KQ 129
>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The
Effector Domain Of The Protein Kinase PknPRK1
pdb|1A2B|A Chain A, Human Rhoa Complexed With Gtp Analogue
Length = 182
Score = 80.9 bits (198), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 65/120 (54%), Gaps = 3/120 (2%)
Query: 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAG 68
I KLV++GDV GK+ L++ F K QF E T+ + + + V+ V+ +WDTAG
Sbjct: 5 IRKKLVIVGDVACGKTCLLIVFSKDQFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAG 63
Query: 69 QERYHSLAPMYYRGAAAAIIVYDITNQASFER-AKKWVQELQAQGNPNMVMALAGNKADL 127
QE Y L P+ Y ++ + I + S E +KW E++ PN+ + L GNK DL
Sbjct: 64 QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDL 122
>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1
Length = 169
Score = 80.5 bits (197), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 46/126 (36%), Positives = 73/126 (57%), Gaps = 2/126 (1%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
KLV+LG VG GKS+L ++FV+G F+E + TI ++ Q + V+ EI DTAG E+
Sbjct: 7 KLVVLGSVGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQ-VEVDAQQCMLEILDTAGTEQ 65
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQE-LQAQGNPNMVMALAGNKADLLDA 130
+ ++ +Y + +VY IT Q++F + ++ L+ + ++ M L GNK DL D
Sbjct: 66 FTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLEDE 125
Query: 131 RKVTAE 136
R V E
Sbjct: 126 RVVGKE 131
>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8
pdb|2NTY|D Chain D, Rop4-Gdp-Prone8
Length = 180
Score = 80.1 bits (196), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 68/122 (55%), Gaps = 3/122 (2%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K V +GD GK+ +++ + F T+ F S + V+ TV +WDTAGQE
Sbjct: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGNTVNLGLWDTAGQED 66
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFER-AKKWVQELQAQGNPNMVMALAGNKADLLDA 130
Y+ L P+ YRGA I+ + + ++AS+E AKKW+ EL+ P + + L G K DL D
Sbjct: 67 YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDD 125
Query: 131 RK 132
++
Sbjct: 126 KQ 127
>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|B Chain B, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|C Chain C, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|D Chain D, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
Length = 212
Score = 78.6 bits (192), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 45/128 (35%), Positives = 70/128 (54%), Gaps = 7/128 (5%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
K V +GD GK+ +++ + +F I F FS +AV+ V +WDTAGQ
Sbjct: 11 KCVTVGDGAVGKTCMLICYTSNKF---PTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQ 67
Query: 70 ERYHSLAPMYYRGAAAAIIVYDITNQASFERA-KKWVQELQAQGNPNMVMALAGNKADLL 128
E Y L P+ YRGA ++ + + ++AS+E KKW+ EL+ + PN+ + L G K DL
Sbjct: 68 EDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELR-RFAPNVPIVLVGTKLDLR 126
Query: 129 DARKVTAE 136
D + A+
Sbjct: 127 DDKGYLAD 134
>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|C Chain C, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|D Chain D, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LWN|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LWN|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LXR|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa And Gdp (Complex
C)
Length = 185
Score = 78.2 bits (191), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 66/124 (53%), Gaps = 3/124 (2%)
Query: 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIW 64
G+ I KLV++GD GK+ L++ F K QF E T+ + + + V+ V+ +W
Sbjct: 4 GSAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVAD-IEVDGKQVELALW 62
Query: 65 DTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFER-AKKWVQELQAQGNPNMVMALAGN 123
DTAGQE Y L P+ Y ++ + I + S E +KW E++ PN+ + L GN
Sbjct: 63 DTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGN 121
Query: 124 KADL 127
K DL
Sbjct: 122 KKDL 125
>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras-
Binding-Domain Of C-Raf1 Kinase (Rafrbd)
Length = 167
Score = 77.8 bits (190), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 72/126 (57%), Gaps = 2/126 (1%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
KLV+LG G GKS+L ++FV+G F+E + TI ++ Q + V+ EI DTAG E+
Sbjct: 5 KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQ-VEVDCQQCMLEILDTAGTEQ 63
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQE-LQAQGNPNMVMALAGNKADLLDA 130
+ ++ +Y + +VY IT Q++F + ++ L+ + ++ M L GNK DL D
Sbjct: 64 FTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDE 123
Query: 131 RKVTAE 136
R V E
Sbjct: 124 RVVGKE 129
>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive
(Gdp-3'p- Bound) Form
pdb|3E5H|A Chain A, Crystal Structure Of Rab28 Gtpase In The Active
(Gppnhp-Bound) Form
Length = 178
Score = 77.8 bits (190), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 69/132 (52%), Gaps = 4/132 (3%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAV-NDATVKFEIWDTAGQE 70
K+V+LGD +GK+SL F + F + + TIG FF + + + + V +IWD GQ
Sbjct: 8 KIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQT 67
Query: 71 RYHSLAPMYYRGAAAAIIVYDITNQASFERAKKW---VQELQAQGNPNMVMALAGNKADL 127
+ Y GA ++VYDITN SFE + W V+++ + ++AL GNK DL
Sbjct: 68 IGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDL 127
Query: 128 LDARKVTAEASI 139
R + E +
Sbjct: 128 EHMRTIKPEKHL 139
>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex
pdb|3CF6|R Chain R, Structure Of Epac2 In Complex With Cyclic-Amp And Rap
Length = 167
Score = 77.4 bits (189), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 72/126 (57%), Gaps = 2/126 (1%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
KLV+LG G GKS+L ++FV+G F+E + TI ++ Q + V+ EI DTAG E+
Sbjct: 5 KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQ-VEVDAQQCMLEILDTAGTEQ 63
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQE-LQAQGNPNMVMALAGNKADLLDA 130
+ ++ +Y + +VY IT Q++F + ++ L+ + ++ M L GNK DL D
Sbjct: 64 FTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLEDE 123
Query: 131 RKVTAE 136
R V E
Sbjct: 124 RVVGKE 129
>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex
pdb|2GCO|B Chain B, Crystal Structure Of The Human Rhoc-gppnhp Complex
pdb|2GCP|A Chain A, Crystal Structure Of The Human Rhoc-Gsp Complex
Length = 201
Score = 77.4 bits (189), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 64/120 (53%), Gaps = 3/120 (2%)
Query: 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAG 68
I KLV++GD GK+ L++ F K QF E T+ + + + V+ V+ +WDTAG
Sbjct: 24 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIAD-IEVDGKQVELALWDTAG 82
Query: 69 QERYHSLAPMYYRGAAAAIIVYDITNQASFER-AKKWVQELQAQGNPNMVMALAGNKADL 127
QE Y L P+ Y ++ + I + S E +KW E++ PN+ + L GNK DL
Sbjct: 83 QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDL 141
>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex
pdb|2WBL|D Chain D, Three-Dimensional Structure Of A Binary Rop-Prone Complex
Length = 180
Score = 77.4 bits (189), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 68/122 (55%), Gaps = 3/122 (2%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K V +GD GK+ +++ + F T+ F S + V+ +TV +WDTAGQE
Sbjct: 8 KCVTVGDGAVGKTCMLISYTGNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQED 66
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFER-AKKWVQELQAQGNPNMVMALAGNKADLLDA 130
Y+ L P+ YRGA ++ + + ++AS+E KKW+ EL+ P + + L G K DL D
Sbjct: 67 YNRLRPLSYRGADVFLLAFSLISKASYENIHKKWLPELKHYA-PGIPIVLVGTKLDLRDD 125
Query: 131 RK 132
++
Sbjct: 126 KQ 127
>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
pdb|1S1C|B Chain B, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
Length = 183
Score = 77.4 bits (189), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 64/120 (53%), Gaps = 3/120 (2%)
Query: 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAG 68
I KLV++GD GK+ L++ F K QF E T+ + + + V+ V+ +WDTAG
Sbjct: 6 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAG 64
Query: 69 QERYHSLAPMYYRGAAAAIIVYDITNQASFER-AKKWVQELQAQGNPNMVMALAGNKADL 127
QE Y L P+ Y ++ + I + S E +KW E++ PN+ + L GNK DL
Sbjct: 65 QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDL 123
>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
pdb|3KZ1|F Chain F, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
Length = 182
Score = 77.4 bits (189), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 64/120 (53%), Gaps = 3/120 (2%)
Query: 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAG 68
I KLV++GD GK+ L++ F K QF E T+ + + + V+ V+ +WDTAG
Sbjct: 5 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAG 63
Query: 69 QERYHSLAPMYYRGAAAAIIVYDITNQASFER-AKKWVQELQAQGNPNMVMALAGNKADL 127
QE Y L P+ Y ++ + I + S E +KW E++ PN+ + L GNK DL
Sbjct: 64 QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDL 122
>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex
Length = 201
Score = 77.0 bits (188), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 64/120 (53%), Gaps = 3/120 (2%)
Query: 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAG 68
I KLV++GD GK+ L++ F K QF E T+ + + + V+ V+ +WDTAG
Sbjct: 24 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIAD-IEVDGKQVELALWDTAG 82
Query: 69 QERYHSLAPMYYRGAAAAIIVYDITNQASFER-AKKWVQELQAQGNPNMVMALAGNKADL 127
QE Y L P+ Y ++ + I + S E +KW E++ PN+ + L GNK DL
Sbjct: 83 QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFXPNVPIILVGNKKDL 141
>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex
pdb|3TVD|B Chain B, Crystal Structure Of Mouse Rhoa-Gtp Complex
Length = 193
Score = 77.0 bits (188), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 64/120 (53%), Gaps = 3/120 (2%)
Query: 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAG 68
I KLV++GD GK+ L++ F K QF E T+ + + + V+ V+ +WDTAG
Sbjct: 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAG 62
Query: 69 QERYHSLAPMYYRGAAAAIIVYDITNQASFER-AKKWVQELQAQGNPNMVMALAGNKADL 127
QE Y L P+ Y ++ + I + S E +KW E++ PN+ + L GNK DL
Sbjct: 63 QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDL 121
>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex
With Rhogdi In Its Active Gppnhp-Bound Form
Length = 195
Score = 77.0 bits (188), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 64/120 (53%), Gaps = 3/120 (2%)
Query: 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAG 68
I KLV++GD GK+ L++ F K QF E T+ + + + V+ V+ +WDTAG
Sbjct: 6 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAG 64
Query: 69 QERYHSLAPMYYRGAAAAIIVYDITNQASFER-AKKWVQELQAQGNPNMVMALAGNKADL 127
QE Y L P+ Y ++ + I + S E +KW E++ PN+ + L GNK DL
Sbjct: 65 QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDL 123
>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|D Chain D, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|F Chain F, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|H Chain H, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|2RGN|C Chain C, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|F Chain F, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 196
Score = 77.0 bits (188), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 64/120 (53%), Gaps = 3/120 (2%)
Query: 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAG 68
I KLV++GD GK+ L++ F K QF E T+ + + + V+ V+ +WDTAG
Sbjct: 7 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAG 65
Query: 69 QERYHSLAPMYYRGAAAAIIVYDITNQASFER-AKKWVQELQAQGNPNMVMALAGNKADL 127
QE Y L P+ Y ++ + I + S E +KW E++ PN+ + L GNK DL
Sbjct: 66 QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDL 124
>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|D Chain D, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|F Chain F, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|H Chain H, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
Length = 192
Score = 76.6 bits (187), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 64/120 (53%), Gaps = 3/120 (2%)
Query: 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAG 68
I KLV++GD GK+ L++ F K QF E T+ + + + V+ V+ +WDTAG
Sbjct: 6 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAG 64
Query: 69 QERYHSLAPMYYRGAAAAIIVYDITNQASFER-AKKWVQELQAQGNPNMVMALAGNKADL 127
QE Y L P+ Y ++ + I + S E +KW E++ PN+ + L GNK DL
Sbjct: 65 QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDL 123
>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e)
Complexed With Gppnhp And The Ras-Binding-Domain Of
Human C-Raf1, Residues 51-131
pdb|3KUC|A Chain A, Complex Of Rap1a(E30dK31E)GDP WITH RAFRBD(A85KN71R)
Length = 167
Score = 76.6 bits (187), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 72/126 (57%), Gaps = 2/126 (1%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
KLV+LG G GKS+L ++FV+G F++ + TI ++ Q + V+ EI DTAG E+
Sbjct: 5 KLVVLGSGGVGKSALTVQFVQGIFVDEYDPTIEDSYRKQ-VEVDCQQCMLEILDTAGTEQ 63
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQE-LQAQGNPNMVMALAGNKADLLDA 130
+ ++ +Y + +VY IT Q++F + ++ L+ + ++ M L GNK DL D
Sbjct: 64 FTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDE 123
Query: 131 RKVTAE 136
R V E
Sbjct: 124 RVVGKE 129
>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium
Botulinum C3 Exoenzyme By Rala Gtpase
Length = 206
Score = 76.6 bits (187), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 73/126 (57%), Gaps = 2/126 (1%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K++++G G GKS+L L+F+ +F+E E T A + + + ++ V+ +I DTAGQE
Sbjct: 16 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-KADSYRKKVVLDGEEVQIDILDTAGQED 74
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQE-LQAQGNPNMVMALAGNKADLLDA 130
Y ++ Y+R + V+ IT SF + ++ L+ + + N+ L GNK+DL D
Sbjct: 75 YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK 134
Query: 131 RKVTAE 136
R+V+ E
Sbjct: 135 RQVSVE 140
>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Y|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
Length = 168
Score = 76.6 bits (187), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 73/126 (57%), Gaps = 2/126 (1%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K++++G G GKS+L L+F+ +F+E E T A + + + ++ V+ +I DTAGQE
Sbjct: 6 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-KADSYRKKVVLDGEEVQIDILDTAGQED 64
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQE-LQAQGNPNMVMALAGNKADLLDA 130
Y ++ Y+R + V+ IT SF + ++ L+ + + N+ L GNK+DL D
Sbjct: 65 YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK 124
Query: 131 RKVTAE 136
R+V+ E
Sbjct: 125 RQVSVE 130
>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
pdb|2A9K|A Chain A, Crystal Structure Of The C3bot-Nad-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
Length = 187
Score = 76.3 bits (186), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 73/126 (57%), Gaps = 2/126 (1%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K++++G G GKS+L L+F+ +F+E E T A + + + ++ V+ +I DTAGQE
Sbjct: 20 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-KADSYRKKVVLDGEEVQIDILDTAGQED 78
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQE-LQAQGNPNMVMALAGNKADLLDA 130
Y ++ Y+R + V+ IT SF + ++ L+ + + N+ L GNK+DL D
Sbjct: 79 YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK 138
Query: 131 RKVTAE 136
R+V+ E
Sbjct: 139 RQVSVE 144
>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
pdb|1UAD|B Chain B, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
Length = 175
Score = 76.3 bits (186), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 73/126 (57%), Gaps = 2/126 (1%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K++++G G GKS+L L+F+ +F+E E T A + + + ++ V+ +I DTAGQE
Sbjct: 8 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-KADSYRKKVVLDGEEVQIDILDTAGQED 66
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQE-LQAQGNPNMVMALAGNKADLLDA 130
Y ++ Y+R + V+ IT SF + ++ L+ + + N+ L GNK+DL D
Sbjct: 67 YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK 126
Query: 131 RKVTAE 136
R+V+ E
Sbjct: 127 RQVSVE 132
>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State
Length = 196
Score = 75.9 bits (185), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 48/131 (36%), Positives = 70/131 (53%), Gaps = 3/131 (2%)
Query: 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDT 66
K+ KL + G G GKS+LV+RF+ +FI + T+ + + Q ++D V EI DT
Sbjct: 25 KSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQA-TIDDEVVSMEILDT 83
Query: 67 AGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNP-NMVMALAGNKA 125
AGQE + R ++VYDIT++ SFE L P N+ + L GNKA
Sbjct: 84 AGQEDTIQREG-HMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKA 142
Query: 126 DLLDARKVTAE 136
DL +R+V+ E
Sbjct: 143 DLDHSRQVSTE 153
>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With
Gdp
Length = 180
Score = 75.1 bits (183), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 63/120 (52%), Gaps = 3/120 (2%)
Query: 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAG 68
I KLV++GDV GK+ L++ F K QF T+ + + + V+ V+ +WDTAG
Sbjct: 4 IRKKLVIVGDVACGKTCLLIVFSKDQFPAVYVPTVFENYVAD-IEVDGKQVELALWDTAG 62
Query: 69 QERYHSLAPMYYRGAAAAIIVYDITNQASFER-AKKWVQELQAQGNPNMVMALAGNKADL 127
QE Y P+ Y ++ + I + S E +KW E++ PN+ + L GNK DL
Sbjct: 63 QEDYDRARPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDL 121
>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State
Length = 207
Score = 75.1 bits (183), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 66/129 (51%), Gaps = 3/129 (2%)
Query: 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAG 68
I KLV++GD GK+ L++ F K +F E T+ + + + V+ V+ +WDTAG
Sbjct: 24 IRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAG 82
Query: 69 QERYHSLAPMYYRGAAAAIIVYDITNQASFER-AKKWVQELQAQGNPNMVMALAGNKADL 127
QE Y L P+ Y ++ + + + S E +KWV E++ PN+ + L NK DL
Sbjct: 83 QEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVK-HFCPNVPIILVANKKDL 141
Query: 128 LDARKVTAE 136
V E
Sbjct: 142 RSDEHVRTE 150
>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
pdb|2V55|D Chain D, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
Length = 200
Score = 75.1 bits (183), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 68/123 (55%), Gaps = 3/123 (2%)
Query: 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWD 65
N+N+ K+V++GD GK++L+ F K F E T+ + + + ++ ++ +WD
Sbjct: 19 NQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWD 77
Query: 66 TAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERA-KKWVQELQAQGNPNMVMALAGNK 124
T+G Y ++ P+ Y + A +I +DI+ + + KKW E+Q + PN M L G K
Sbjct: 78 TSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQ-EFCPNTKMLLVGCK 136
Query: 125 ADL 127
+DL
Sbjct: 137 SDL 139
>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS
Length = 184
Score = 75.1 bits (183), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 68/124 (54%), Gaps = 3/124 (2%)
Query: 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIW 64
N+N+ K+V++GD GK++L+ F K F E T+ + + + ++ ++ +W
Sbjct: 2 SNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLW 60
Query: 65 DTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERA-KKWVQELQAQGNPNMVMALAGN 123
DT+G Y ++ P+ Y + A +I +DI+ + + KKW E+Q + PN M L G
Sbjct: 61 DTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQ-EFCPNTKMLLVGC 119
Query: 124 KADL 127
K+DL
Sbjct: 120 KSDL 123
>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
pdb|1GWN|C Chain C, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
Length = 205
Score = 74.7 bits (182), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 68/123 (55%), Gaps = 3/123 (2%)
Query: 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWD 65
N+N+ K+V++GD GK++L+ F K F E T+ + + + ++ ++ +WD
Sbjct: 24 NQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWD 82
Query: 66 TAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERA-KKWVQELQAQGNPNMVMALAGNK 124
T+G Y ++ P+ Y + A +I +DI+ + + KKW E+Q + PN M L G K
Sbjct: 83 TSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQ-EFCPNTKMLLVGCK 141
Query: 125 ADL 127
+DL
Sbjct: 142 SDL 144
>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein
Rhod
Length = 214
Score = 73.9 bits (180), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 63/119 (52%), Gaps = 3/119 (2%)
Query: 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQ 69
+ K+VL+GD G GK+SL++ F G F E T+ + L V V IWDTAGQ
Sbjct: 34 SVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVN-LQVKGKPVHLHIWDTAGQ 92
Query: 70 ERYHSLAPMYYRGAAAAIIVYDITNQASFERA-KKWVQELQAQGNPNMVMALAGNKADL 127
+ Y L P++Y A+ ++ +D+T+ SF+ +W E+ + + + G K DL
Sbjct: 93 DDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCK-KVPIIVVGCKTDL 150
>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
pdb|1Z2C|C Chain C, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
Length = 193
Score = 73.6 bits (179), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 63/120 (52%), Gaps = 3/120 (2%)
Query: 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAG 68
I KLV++GD GK+ L++ K QF E T+ + + + V+ V+ +WDTAG
Sbjct: 4 IRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYIAD-IEVDGKQVELALWDTAG 62
Query: 69 QERYHSLAPMYYRGAAAAIIVYDITNQASFER-AKKWVQELQAQGNPNMVMALAGNKADL 127
QE Y L P+ Y ++ + I + S E +KW E++ PN+ + L GNK DL
Sbjct: 63 QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDL 121
>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX
Length = 177
Score = 73.6 bits (179), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 63/120 (52%), Gaps = 3/120 (2%)
Query: 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAG 68
I KLV++GD GK+ L++ K QF E T+ + + + V+ V+ +WDTAG
Sbjct: 2 IRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAG 60
Query: 69 QERYHSLAPMYYRGAAAAIIVYDITNQASFER-AKKWVQELQAQGNPNMVMALAGNKADL 127
QE Y L P+ Y ++ + I + S E +KW E++ PN+ + L GNK DL
Sbjct: 61 QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDL 119
>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|1XCG|F Chain F, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|3T06|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
pdb|3T06|F Chain F, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
Length = 178
Score = 73.6 bits (179), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 63/120 (52%), Gaps = 3/120 (2%)
Query: 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAG 68
I KLV++GD GK+ L++ K QF E T+ + + + V+ V+ +WDTAG
Sbjct: 2 IRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAG 60
Query: 69 QERYHSLAPMYYRGAAAAIIVYDITNQASFER-AKKWVQELQAQGNPNMVMALAGNKADL 127
QE Y L P+ Y ++ + I + S E +KW E++ PN+ + L GNK DL
Sbjct: 61 QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDL 119
>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap
Domain Of Arhgap20
Length = 180
Score = 73.6 bits (179), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 63/120 (52%), Gaps = 3/120 (2%)
Query: 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAG 68
I KLV++GD GK+ L++ K QF E T+ + + + V+ V+ +WDTAG
Sbjct: 4 IRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAG 62
Query: 69 QERYHSLAPMYYRGAAAAIIVYDITNQASFER-AKKWVQELQAQGNPNMVMALAGNKADL 127
QE Y L P+ Y ++ + I + S E +KW E++ PN+ + L GNK DL
Sbjct: 63 QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDL 121
>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC3|C Chain C, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|A Chain A, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|C Chain C, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
Length = 175
Score = 73.6 bits (179), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 72/126 (57%), Gaps = 2/126 (1%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K++++G G GKS+L L+F+ +F+E E T A + + + ++ V+ +I DTAG E
Sbjct: 8 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-KADSYRKKVVLDGEEVQIDILDTAGLED 66
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQE-LQAQGNPNMVMALAGNKADLLDA 130
Y ++ Y+R + V+ IT SF + ++ L+ + + N+ L GNK+DL D
Sbjct: 67 YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK 126
Query: 131 RKVTAE 136
R+V+ E
Sbjct: 127 RQVSVE 132
>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap
pdb|1FTN|A Chain A, Crystal Structure Of The Human RhoaGDP COMPLEX
Length = 193
Score = 73.6 bits (179), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 63/120 (52%), Gaps = 3/120 (2%)
Query: 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAG 68
I KLV++GD GK+ L++ K QF E T+ + + + V+ V+ +WDTAG
Sbjct: 4 IRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAG 62
Query: 69 QERYHSLAPMYYRGAAAAIIVYDITNQASFER-AKKWVQELQAQGNPNMVMALAGNKADL 127
QE Y L P+ Y ++ + I + S E +KW E++ PN+ + L GNK DL
Sbjct: 63 QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDL 121
>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
pdb|1CC0|C Chain C, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
Length = 190
Score = 73.2 bits (178), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 63/120 (52%), Gaps = 3/120 (2%)
Query: 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAG 68
I KLV++GD GK+ L++ K QF E T+ + + + V+ V+ +WDTAG
Sbjct: 4 IRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAG 62
Query: 69 QERYHSLAPMYYRGAAAAIIVYDITNQASFER-AKKWVQELQAQGNPNMVMALAGNKADL 127
QE Y L P+ Y ++ + I + S E +KW E++ PN+ + L GNK DL
Sbjct: 63 QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDL 121
>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Magnesium
pdb|1PLK|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
Length = 166
Score = 73.2 bits (178), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 67/117 (57%), Gaps = 2/117 (1%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
KLV++G G GKS+L ++ ++ F++ + TI ++ Q + ++ T +I DTAGQE
Sbjct: 5 KLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTAGQEE 63
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQEL-QAQGNPNMVMALAGNKADL 127
Y ++ Y R + V+ I N SFE ++ +++ + + + ++ M L GNK DL
Sbjct: 64 YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1JAI|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Manganese
pdb|1PLJ|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|1PLL|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|821P|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Glycine-12 Mutant Of
P21h-Ras
Length = 166
Score = 73.2 bits (178), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 67/117 (57%), Gaps = 2/117 (1%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
KLV++G G GKS+L ++ ++ F++ + TI ++ Q + ++ T +I DTAGQE
Sbjct: 5 KLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTAGQEE 63
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQEL-QAQGNPNMVMALAGNKADL 127
Y ++ Y R + V+ I N SFE ++ +++ + + + ++ M L GNK DL
Sbjct: 64 YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 72.8 bits (177), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 67/117 (57%), Gaps = 2/117 (1%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
KLV++G G GKS+L ++ ++ F++ + TI ++ Q + ++ T +I DTAGQE
Sbjct: 5 KLVVVGARGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTAGQEE 63
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQEL-QAQGNPNMVMALAGNKADL 127
Y ++ Y R + V+ I N SFE ++ +++ + + + ++ M L GNK DL
Sbjct: 64 YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Gly-12 Mutant Of
P21-H-Ras
Length = 166
Score = 72.8 bits (177), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 67/117 (57%), Gaps = 2/117 (1%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
KLV++G G GKS+L ++ ++ F++ + TI ++ Q + ++ T +I DTAGQE
Sbjct: 5 KLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTAGQEE 63
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQEL-QAQGNPNMVMALAGNKADL 127
Y ++ Y R + V+ I N SFE ++ +++ + + + ++ M L GNK DL
Sbjct: 64 YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DST|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSU|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSN|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
Length = 189
Score = 72.8 bits (177), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 66/117 (56%), Gaps = 2/117 (1%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
KLV++G G GKS+L ++ ++ F++ + TI ++ Q + ++ T +I DTAGQE
Sbjct: 6 KLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTAGQEE 64
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQ-AQGNPNMVMALAGNKADL 127
Y ++ Y R + V+ I N SFE + ++++ + + ++ M L GNK DL
Sbjct: 65 YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDL 121
>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 72.4 bits (176), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 67/117 (57%), Gaps = 2/117 (1%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
KLV++G G GKS+L ++ ++ F++ + TI ++ Q + ++ T +I DTAGQE
Sbjct: 6 KLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTAGQEE 64
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQ-AQGNPNMVMALAGNKADL 127
Y ++ Y R + V+ I N SFE + ++++ + + ++ M L GNK+DL
Sbjct: 65 YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDL 121
>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1
pdb|2H7V|B Chain B, Co-crystal Structure Of Ypka-rac1
pdb|2P2L|A Chain A, Rac1-gdp-zinc Complex
pdb|2P2L|B Chain B, Rac1-gdp-zinc Complex
pdb|2P2L|C Chain C, Rac1-gdp-zinc Complex
Length = 188
Score = 70.5 bits (171), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 66/131 (50%), Gaps = 8/131 (6%)
Query: 5 GNKNINA-KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKF 61
G+K + A K V++GD GK+ L++ + F I F +S + V+ V
Sbjct: 1 GSKLMQAIKCVVVGDGAVGKTCLLISYTTNAF---PGEYIPTVFDNYSANVMVDGKPVNL 57
Query: 62 EIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMAL 120
+WDTAGQE Y L P+ Y ++I + + + ASFE + KW E++ PN + L
Sbjct: 58 GLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIIL 116
Query: 121 AGNKADLLDAR 131
G K DL D +
Sbjct: 117 VGTKLDLRDDK 127
>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa
Mutant (Q63l)
Length = 184
Score = 70.5 bits (171), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 62/120 (51%), Gaps = 3/120 (2%)
Query: 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAG 68
I KLV++GD GK+ L++ K QF E T+ + + + V+ V+ +WDTAG
Sbjct: 7 IRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAG 65
Query: 69 QERYHSLAPMYYRGAAAAIIVYDITNQASFER-AKKWVQELQAQGNPNMVMALAGNKADL 127
E Y L P+ Y ++ + I + S E +KW E++ PN+ + L GNK DL
Sbjct: 66 LEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDL 124
>pdb|1MH1|A Chain A, Small G-Protein
Length = 186
Score = 70.1 bits (170), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 61/123 (49%), Gaps = 7/123 (5%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
K V++GD GK+ L++ + F I F +S + V+ V +WDTAGQ
Sbjct: 7 KCVVVGDGAVGKTCLLISYTTNAF---PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 63
Query: 70 ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLL 128
E Y L P+ Y ++I + + + ASFE + KW E++ PN + L G K DL
Sbjct: 64 EDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLR 122
Query: 129 DAR 131
D +
Sbjct: 123 DDK 125
>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase
And Gtpase Activating Protein Sptp Bound To Rac1
Length = 184
Score = 70.1 bits (170), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 61/123 (49%), Gaps = 7/123 (5%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
K V++GD GK+ L++ + F I F +S + V+ V +WDTAGQ
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAF---PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 61
Query: 70 ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLL 128
E Y L P+ Y ++I + + + ASFE + KW E++ PN + L G K DL
Sbjct: 62 EDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLR 120
Query: 129 DAR 131
D +
Sbjct: 121 DDK 123
>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
pdb|1HH4|B Chain B, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
Length = 192
Score = 70.1 bits (170), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 61/123 (49%), Gaps = 7/123 (5%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
K V++GD GK+ L++ + F I F +S + V+ V +WDTAGQ
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAF---PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 61
Query: 70 ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLL 128
E Y L P+ Y ++I + + + ASFE + KW E++ PN + L G K DL
Sbjct: 62 EDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLR 120
Query: 129 DAR 131
D +
Sbjct: 121 DDK 123
>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|D Chain D, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|F Chain F, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
Length = 188
Score = 69.7 bits (169), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 66/130 (50%), Gaps = 7/130 (5%)
Query: 1 MATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVK 60
M+ +I KLV++GD GK+ L++ KGQF E T+ + + + V+ V+
Sbjct: 1 MSQQVGNSIRRKLVIVGDGACGKTCLLIVNSKGQFPEVYVPTVFENYVAD-VEVDGRRVE 59
Query: 61 FEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQ--AQGNPNMV 117
+WDTAGQE Y L P+ Y + +I + I S E + KW+ E+ QG P
Sbjct: 60 LALWDTAGQEDYDRLRPLSYPDSNVVLICFSIDLPDSLENVQEKWIAEVLHFCQGVP--- 116
Query: 118 MALAGNKADL 127
+ L G K DL
Sbjct: 117 IILVGCKVDL 126
>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
pdb|2ERY|B Chain B, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
Length = 172
Score = 69.3 bits (168), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 66/115 (57%), Gaps = 2/115 (1%)
Query: 23 KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
KS+L ++F++ F+ + TI ++ Q + ++D + +I DTAGQE + ++ Y R
Sbjct: 18 KSALTIQFIQSYFVTDYDPTIEDSYTKQCV-IDDRAARLDILDTAGQEEFGAMREQYMRT 76
Query: 83 AAAAIIVYDITNQASFERAKKWVQE-LQAQGNPNMVMALAGNKADLLDARKVTAE 136
++V+ +T++ SFE K+ ++ L+ + M L GNKADL R+VT E
Sbjct: 77 GEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQE 131
>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State
Length = 201
Score = 69.3 bits (168), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 70/129 (54%), Gaps = 9/129 (6%)
Query: 12 KLVLLGDVGAGKSSLVLRFV-KGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAG 68
K VL+GD GK+SLV+ + G E+ I AF FS ++V+ V+ ++ DTAG
Sbjct: 22 KCVLVGDGAVGKTSLVVSYTTNGYPTEY----IPTAFDNFSAVVSVDGRPVRLQLCDTAG 77
Query: 69 QERYHSLAPMYYRGAAAAIIVYDITNQASFER-AKKWVQELQAQGNPNMVMALAGNKADL 127
Q+ + L P+ Y ++ + + + +SF+ ++KWV E++ P + L G ++DL
Sbjct: 78 QDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHC-PKAPIILVGTQSDL 136
Query: 128 LDARKVTAE 136
+ KV E
Sbjct: 137 REDVKVLIE 145
>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The
Vav1 Exchange Factor
Length = 184
Score = 68.6 bits (166), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 60/123 (48%), Gaps = 7/123 (5%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
K V++GD GK+ L++ + F I F +S + V+ V +WDTAGQ
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAF---PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 61
Query: 70 ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLL 128
E Y L P+ Y +I + + + ASFE + KW E++ PN + L G K DL
Sbjct: 62 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLR 120
Query: 129 DAR 131
D +
Sbjct: 121 DDK 123
>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp
pdb|2W2X|A Chain A, Complex Of Rac2 And Plcg2 Spph Domain
pdb|2W2X|B Chain B, Complex Of Rac2 And Plcg2 Spph Domain
Length = 185
Score = 68.6 bits (166), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 61/123 (49%), Gaps = 7/123 (5%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
K V++GDV GK+ L++ + F I F +S + V+ V +WDTAGQ
Sbjct: 11 KCVVVGDVAVGKTCLLISYTTNAF---PGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQ 67
Query: 70 ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLL 128
E Y L P+ Y +I + + + AS+E + KW E++ P+ + L G K DL
Sbjct: 68 EDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHH-CPSTPIILVGTKLDLR 126
Query: 129 DAR 131
D +
Sbjct: 127 DDK 129
>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|B Chain B, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|C Chain C, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|D Chain D, Rac2 (G12v) In Complex With Gtpgs
Length = 184
Score = 68.6 bits (166), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 61/123 (49%), Gaps = 7/123 (5%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
K V++GDV GK+ L++ + F I F +S + V+ V +WDTAGQ
Sbjct: 12 KCVVVGDVAVGKTCLLISYTTNAF---PGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQ 68
Query: 70 ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLL 128
E Y L P+ Y +I + + + AS+E + KW E++ P+ + L G K DL
Sbjct: 69 EDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHH-CPSTPIILVGTKLDLR 127
Query: 129 DAR 131
D +
Sbjct: 128 DDK 130
>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With
Arfaptin (P21)
pdb|1I4L|D Chain D, Crystal Structure Analysis Of Rac1-Gdp In Complex With
Arfaptin (P41)
Length = 192
Score = 68.6 bits (166), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 60/123 (48%), Gaps = 7/123 (5%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
K V++GD GK+ L++ + F I F +S + V+ V +WDTAGQ
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAF---PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 61
Query: 70 ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLL 128
E Y L P+ Y +I + + + ASFE + KW E++ PN + L G K DL
Sbjct: 62 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLR 120
Query: 129 DAR 131
D +
Sbjct: 121 DDK 123
>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
pdb|1HE1|D Chain D, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
Length = 176
Score = 68.6 bits (166), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 60/123 (48%), Gaps = 7/123 (5%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
K V++GD GK+ L++ + F I F +S + V+ V +WDTAGQ
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAF---PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 61
Query: 70 ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLL 128
E Y L P+ Y +I + + + ASFE + KW E++ PN + L G K DL
Sbjct: 62 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLR 120
Query: 129 DAR 131
D +
Sbjct: 121 DDK 123
>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|B Chain B, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|C Chain C, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SU8|A Chain A, Crystal Structure Of A Truncated Intracellular Domain Of
Plexin-B1 In Complex With Rac1
Length = 184
Score = 68.6 bits (166), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 60/123 (48%), Gaps = 7/123 (5%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
K V++GD GK+ L++ + F I F +S + V+ V +WDTAGQ
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAF---PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 61
Query: 70 ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLL 128
E Y L P+ Y +I + + + ASFE + KW E++ PN + L G K DL
Sbjct: 62 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLR 120
Query: 129 DAR 131
D +
Sbjct: 121 DDK 123
>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta
2
Length = 178
Score = 68.6 bits (166), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 60/123 (48%), Gaps = 7/123 (5%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
K V++GD GK+ L++ + F I F +S + V+ V +WDTAGQ
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAF---PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 61
Query: 70 ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLL 128
E Y L P+ Y +I + + + ASFE + KW E++ PN + L G K DL
Sbjct: 62 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLR 120
Query: 129 DAR 131
D +
Sbjct: 121 DDK 123
>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|D Chain D, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|F Chain F, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|H Chain H, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|2NZ8|A Chain A, N-Terminal Dhph Cassette Of Trio In Complex With
Nucleotide- Free Rac1
pdb|3BJI|C Chain C, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
pdb|3BJI|D Chain D, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
Length = 177
Score = 68.6 bits (166), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 60/123 (48%), Gaps = 7/123 (5%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
K V++GD GK+ L++ + F I F +S + V+ V +WDTAGQ
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAF---PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 61
Query: 70 ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLL 128
E Y L P+ Y +I + + + ASFE + KW E++ PN + L G K DL
Sbjct: 62 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLR 120
Query: 129 DAR 131
D +
Sbjct: 121 DDK 123
>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1
pdb|3TH5|B Chain B, Crystal Structure Of Wild-Type Rac1
Length = 204
Score = 68.6 bits (166), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 60/123 (48%), Gaps = 7/123 (5%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
K V++GD GK+ L++ + F I F +S + V+ V +WDTAGQ
Sbjct: 32 KCVVVGDGAVGKTCLLISYTTNAF---PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 88
Query: 70 ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLL 128
E Y L P+ Y +I + + + ASFE + KW E++ PN + L G K DL
Sbjct: 89 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHH-CPNTPIILVGTKLDLR 147
Query: 129 DAR 131
D +
Sbjct: 148 DDK 150
>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBD|B Chain B, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBE|A Chain A, Crystal Structure Of Rac1 P29s Mutant
Length = 187
Score = 68.2 bits (165), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 60/123 (48%), Gaps = 7/123 (5%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
K V++GD GK+ L++ + F I F +S + V+ V +WDTAGQ
Sbjct: 15 KCVVVGDGAVGKTCLLISYTTNAF---SGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 71
Query: 70 ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLL 128
E Y L P+ Y +I + + + ASFE + KW E++ PN + L G K DL
Sbjct: 72 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLR 130
Query: 129 DAR 131
D +
Sbjct: 131 DDK 133
>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1.
pdb|2YIN|D Chain D, Structure Of The Complex Between Dock2 And Rac1
Length = 196
Score = 68.2 bits (165), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 60/123 (48%), Gaps = 7/123 (5%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
K V++GD GK+ L++ + F I F +S + V+ V +WDTAGQ
Sbjct: 24 KCVVVGDGAVGKTCLLISYTTNAF---PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 80
Query: 70 ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLL 128
E Y L P+ Y +I + + + ASFE + KW E++ PN + L G K DL
Sbjct: 81 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLR 139
Query: 129 DAR 131
D +
Sbjct: 140 DDK 142
>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
pdb|3B13|D Chain D, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
Length = 184
Score = 68.2 bits (165), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 66/134 (49%), Gaps = 8/134 (5%)
Query: 2 ATTGNKNINA-KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDAT 58
++G+ + A K V++GD GK+ L++ + F I F +S + V+
Sbjct: 1 GSSGSSGMQAIKCVVVGDGAVGKNCLLISYTTNAF---PGEYIPTVFDNYSANVMVDGKP 57
Query: 59 VKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMV 117
V +WDTAGQE Y L P+ Y +I + + + ASFE + KW E++ PN
Sbjct: 58 VNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTP 116
Query: 118 MALAGNKADLLDAR 131
+ L G K DL D +
Sbjct: 117 IILVGTKLDLRDDK 130
>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1
Length = 201
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 67/125 (53%), Gaps = 2/125 (1%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K+V+LG GK+SL +FV+G+F E + T+ + S+ + + + DTAGQ+
Sbjct: 26 KVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDE 84
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQEL-QAQGNPNMVMALAGNKADLLDA 130
Y L + G ++VY +T+ SF+ + Q+L + G + + L GNKADL
Sbjct: 85 YSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPE 144
Query: 131 RKVTA 135
R+V A
Sbjct: 145 REVQA 149
>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp
pdb|3KKQ|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gdp
Length = 183
Score = 67.0 bits (162), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 63/115 (54%), Gaps = 2/115 (1%)
Query: 23 KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
KS+L ++F + F++ + TI ++ T N + ++ DTAGQE + ++ Y R
Sbjct: 31 KSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAI-LDVLDTAGQEEFSAMREQYMRT 89
Query: 83 AAAAIIVYDITNQASFERAKKWVQE-LQAQGNPNMVMALAGNKADLLDARKVTAE 136
+IVY +T++ASFE ++ Q L+ + + M L NK DL+ RKVT +
Sbjct: 90 GDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRD 144
>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant
pdb|4GZM|B Chain B, Crystal Structure Of Rac1 F28l Mutant
Length = 204
Score = 66.6 bits (161), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 63/127 (49%), Gaps = 15/127 (11%)
Query: 12 KLVLLGDVGAGKSSLVLRF----VKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWD 65
K V++GD GK+ L++ + + G++I F +S + V+ V +WD
Sbjct: 32 KCVVVGDGAVGKTCLLISYTTNALPGEYIP-------TVFDNYSANVMVDGKPVNLGLWD 84
Query: 66 TAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNK 124
TAGQE Y L P+ Y +I + + + ASFE + KW E++ PN + L G K
Sbjct: 85 TAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHH-CPNTPIILVGTK 143
Query: 125 ADLLDAR 131
DL D +
Sbjct: 144 LDLRDDK 150
>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb
In Its Active Conformation: Significance For Effector
Protein Binding
Length = 174
Score = 66.6 bits (161), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 73/127 (57%), Gaps = 3/127 (2%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K++++G G GKS+L L+F+ +F+E E T A + + + ++ V+ +I DTAG E
Sbjct: 5 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-KADSYRKKVVLDGEEVQIDILDTAGLED 63
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQE-LQAQGNPNMV-MALAGNKADLLD 129
Y ++ Y+R ++V+ IT SF ++ ++ L+ + + + + + GNK+DL +
Sbjct: 64 YAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEE 123
Query: 130 ARKVTAE 136
R+V E
Sbjct: 124 RRQVPVE 130
>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex
Length = 178
Score = 66.6 bits (161), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 73/127 (57%), Gaps = 3/127 (2%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K++++G G GKS+L L+F+ +F+E E T A + + + ++ V+ +I DTAG E
Sbjct: 9 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-KADSYRKKVVLDGEEVQIDILDTAGLED 67
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQE-LQAQGNPNMV-MALAGNKADLLD 129
Y ++ Y+R ++V+ IT SF ++ ++ L+ + + + + + GNK+DL +
Sbjct: 68 YAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEE 127
Query: 130 ARKVTAE 136
R+V E
Sbjct: 128 RRQVPVE 134
>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp
pdb|1XTR|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With
Gppnhp
pdb|1XTS|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gtp
Length = 177
Score = 66.6 bits (161), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 65/126 (51%), Gaps = 2/126 (1%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K+ +LG GKSSL ++FV+GQF++ + TI F++ + VN ++ DTAGQ+
Sbjct: 8 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENT-FTKLITVNGQEYHLQLVDTAGQDE 66
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWV-QELQAQGNPNMVMALAGNKADLLDA 130
Y Y I+VY +T+ SFE K + L G + + L GNK DL
Sbjct: 67 YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHME 126
Query: 131 RKVTAE 136
R ++ E
Sbjct: 127 RVISYE 132
>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp
pdb|2C2H|B Chain B, Crystal Structure Of The Human Rac3 In Complex With Gdp
Length = 192
Score = 66.6 bits (161), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 60/123 (48%), Gaps = 7/123 (5%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
K V++GD GK+ L++ + F I F +S + V+ V +WDTAGQ
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAF---PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 61
Query: 70 ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLL 128
E Y L P+ Y +I + + + ASFE + KW E++ P+ + L G K DL
Sbjct: 62 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PHTPILLVGTKLDLR 120
Query: 129 DAR 131
D +
Sbjct: 121 DDK 123
>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex
With Pde6d
Length = 181
Score = 66.6 bits (161), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 65/126 (51%), Gaps = 2/126 (1%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K+ +LG GKSSL ++FV+GQF++ + TI F++ + VN ++ DTAGQ+
Sbjct: 8 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENT-FTKLITVNGQEYHLQLVDTAGQDE 66
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQE-LQAQGNPNMVMALAGNKADLLDA 130
Y Y I+VY +T+ SFE K + L G + + L GNK DL
Sbjct: 67 YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHME 126
Query: 131 RKVTAE 136
R ++ E
Sbjct: 127 RVISYE 132
>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
pdb|3SEA|B Chain B, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
Length = 167
Score = 66.2 bits (160), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 65/126 (51%), Gaps = 2/126 (1%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K+ +LG GKSSL ++FV+GQF++ + TI F++ + VN ++ DTAGQ+
Sbjct: 6 KIAILGYRSVGKSSLTIQFVEGQFVDSADPTIENT-FTKLITVNGQEYHLQLVDTAGQDE 64
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWV-QELQAQGNPNMVMALAGNKADLLDA 130
Y Y I+VY +T+ SFE K + L G + + L GNK DL
Sbjct: 65 YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHME 124
Query: 131 RKVTAE 136
R ++ E
Sbjct: 125 RVISYE 130
>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp
Length = 169
Score = 66.2 bits (160), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 65/126 (51%), Gaps = 2/126 (1%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K+ +LG GKSSL ++FV+GQF++ + TI F++ + VN ++ DTAGQ+
Sbjct: 3 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENT-FTKLITVNGQEYHLQLVDTAGQDE 61
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQE-LQAQGNPNMVMALAGNKADLLDA 130
Y Y I+VY +T+ SFE K + L G + + L GNK DL
Sbjct: 62 YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHME 121
Query: 131 RKVTAE 136
R ++ E
Sbjct: 122 RVISYE 127
>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p.
pdb|2IC5|B Chain B, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p
Length = 180
Score = 66.2 bits (160), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 60/123 (48%), Gaps = 7/123 (5%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
K V++GD GK+ L++ + F I F +S + V+ V +WDTAGQ
Sbjct: 6 KCVVVGDGAVGKTCLLISYTTNAF---PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 62
Query: 70 ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLL 128
E Y L P+ Y +I + + + ASFE + KW E++ P+ + L G K DL
Sbjct: 63 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHH-CPHTPILLVGTKLDLR 121
Query: 129 DAR 131
D +
Sbjct: 122 DDK 124
>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2G0N|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2OV2|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|F Chain F, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|C Chain C, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|G Chain G, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|D Chain D, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|E Chain E, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|H Chain H, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2QME|A Chain A, Crystal Structure Of Human Rac3 In Complex With Crib
Domain Of Human P21-Activated Kinase 1 (Pak1)
Length = 179
Score = 66.2 bits (160), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 60/123 (48%), Gaps = 7/123 (5%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
K V++GD GK+ L++ + F I F +S + V+ V +WDTAGQ
Sbjct: 6 KCVVVGDGAVGKTCLLISYTTNAF---PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 62
Query: 70 ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLL 128
E Y L P+ Y +I + + + ASFE + KW E++ P+ + L G K DL
Sbjct: 63 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PHTPILLVGTKLDLR 121
Query: 129 DAR 131
D +
Sbjct: 122 DDK 124
>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp
pdb|1X1S|A Chain A, Crystal Structure Of M-ras In Complex With Gppnhp
Length = 178
Score = 66.2 bits (160), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 77/140 (55%), Gaps = 5/140 (3%)
Query: 1 MATTGNKNINA---KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDA 57
MAT+ + N KLV++GD G GKS+L ++F + F+ + TI ++ T N
Sbjct: 1 MATSAVPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQW 60
Query: 58 TVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQE-LQAQGNPNM 116
+ ++ DTAGQE + ++ Y R +IVY +T++ASFE ++ Q L+ + +
Sbjct: 61 AI-LDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESF 119
Query: 117 VMALAGNKADLLDARKVTAE 136
M L NK DL+ RKVT +
Sbjct: 120 PMILVANKVDLMHLRKVTRD 139
>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 1)
pdb|3PIT|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 2)
Length = 183
Score = 65.9 bits (159), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 77/140 (55%), Gaps = 5/140 (3%)
Query: 1 MATTGNKNINA---KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDA 57
MAT+ + N KLV++GD G GKS+L ++F + F+ + TI ++ T N
Sbjct: 6 MATSAVPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVPEYDPTIEDSYLKHTEIDNQW 65
Query: 58 TVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQE-LQAQGNPNM 116
+ ++ DTAGQE + ++ Y R +IVY +T++ASFE ++ Q L+ + +
Sbjct: 66 AI-LDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESF 124
Query: 117 VMALAGNKADLLDARKVTAE 136
M L NK DL+ RKVT +
Sbjct: 125 PMILVANKVDLMHLRKVTRD 144
>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex
pdb|2ATX|B Chain B, Crystal Structure Of The Tc10 Gppnhp Complex
Length = 194
Score = 65.9 bits (159), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 64/132 (48%), Gaps = 3/132 (2%)
Query: 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIW 64
G + K V++GD GK+ L++ + F E T+ ++ ++ V ++
Sbjct: 13 GPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQYLLGLY 71
Query: 65 DTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGN 123
DTAGQE Y L P+ Y +I + + N ASF+ K +WV EL+ PN+ L G
Sbjct: 72 DTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYA-PNVPFLLIGT 130
Query: 124 KADLLDARKVTA 135
+ DL D K A
Sbjct: 131 QIDLRDDPKTLA 142
>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1
Length = 180
Score = 65.5 bits (158), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 59/123 (47%), Gaps = 7/123 (5%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
K V++GD GK+ L++ + F I F +S + V+ V +WDTAG
Sbjct: 8 KCVVVGDGAVGKTCLLISYTTNAF---PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGL 64
Query: 70 ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLL 128
E Y L P+ Y +I + + + ASFE + KW E++ PN + L G K DL
Sbjct: 65 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLR 123
Query: 129 DAR 131
D +
Sbjct: 124 DDK 126
>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With
Arfaptin
pdb|2RMK|A Chain A, Rac1PRK1 COMPLEX
Length = 192
Score = 65.5 bits (158), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 59/123 (47%), Gaps = 7/123 (5%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
K V++GD GK+ L++ + F I F +S + V+ V +WDTAG
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAF---PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGL 61
Query: 70 ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLL 128
E Y L P+ Y +I + + + ASFE + KW E++ PN + L G K DL
Sbjct: 62 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLR 120
Query: 129 DAR 131
D +
Sbjct: 121 DDK 123
>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX
Length = 192
Score = 65.5 bits (158), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 59/123 (47%), Gaps = 7/123 (5%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
K V++GD GK+ L++ + F I F +S + V+ V +WDTAG
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAF---PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGL 61
Query: 70 ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLL 128
E Y L P+ Y +I + + + ASFE + KW E++ PN + L G K DL
Sbjct: 62 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLR 120
Query: 129 DAR 131
D +
Sbjct: 121 DDK 123
>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex
Length = 192
Score = 65.5 bits (158), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 60/123 (48%), Gaps = 7/123 (5%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
K V++GD GK+ L++ + F I F +S + V+ V +WDTAGQ
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAF---PGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQ 61
Query: 70 ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLL 128
E Y L P+ Y +I + + + AS+E + KW E++ P+ + L G K DL
Sbjct: 62 EDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHC-PSTPIILVGTKLDLR 120
Query: 129 DAR 131
D +
Sbjct: 121 DDK 123
>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|B Chain B, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|P Chain P, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
Length = 183
Score = 65.5 bits (158), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 78/140 (55%), Gaps = 5/140 (3%)
Query: 1 MATTGNKNINA---KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDA 57
MAT+ + N KLV++GD G GKS+L ++F + F++ + TI ++ T N
Sbjct: 6 MATSAVPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDEYDPTIEDSYRKHTEIDNQW 65
Query: 58 TVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQE-LQAQGNPNM 116
+ ++ DTAGQE + ++ Y R +IVY +T++ASFE ++ Q L+ + +
Sbjct: 66 AI-LDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESF 124
Query: 117 VMALAGNKADLLDARKVTAE 136
M L NK DL+ RKVT +
Sbjct: 125 PMILVANKVDLMHLRKVTRD 144
>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant
pdb|4GZL|B Chain B, Crystal Structure Of Rac1 Q61l Mutant
Length = 204
Score = 65.1 bits (157), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 59/123 (47%), Gaps = 7/123 (5%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
K V++GD GK+ L++ + F I F +S + V+ V +WDTAG
Sbjct: 32 KCVVVGDGAVGKTCLLISYTTNAF---PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGL 88
Query: 70 ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLL 128
E Y L P+ Y +I + + + ASFE + KW E++ PN + L G K DL
Sbjct: 89 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHH-CPNTPIILVGTKLDLR 147
Query: 129 DAR 131
D +
Sbjct: 148 DDK 150
>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
pdb|2ERX|B Chain B, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
Length = 172
Score = 64.7 bits (156), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 67/124 (54%), Gaps = 3/124 (2%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
++ + G G GKSSLVLRFVKG F E T+ + Q ++ + + +I DT G +
Sbjct: 5 RVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDT-YRQVISCDKSICTLQITDTTGSHQ 63
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKK-WVQELQAQGN-PNMVMALAGNKADLLD 129
+ ++ + A I+VY IT++ S E K + Q + +G+ ++ + L GNK D
Sbjct: 64 FPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESP 123
Query: 130 ARKV 133
+R+V
Sbjct: 124 SREV 127
>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
pdb|2CLS|B Chain B, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
Length = 198
Score = 63.5 bits (153), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 62/121 (51%), Gaps = 7/121 (5%)
Query: 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTA 67
KLVL+GDV GK++++ K + E+ + F ++ L + V+ +WDT+
Sbjct: 11 RCKLVLVGDVQCGKTAMLQVLAKDCY---PETYVPTVFENYTACLETEEQRVELSLWDTS 67
Query: 68 GQERYHSLAPMYYRGAAAAIIVYDITNQASFERA-KKWVQELQAQGNPNMVMALAGNKAD 126
G Y ++ P+ Y + A ++ +DI+ + + A KKW E+ P+ + L G K D
Sbjct: 68 GSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEI-LDYCPSTRVLLIGCKTD 126
Query: 127 L 127
L
Sbjct: 127 L 127
>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450m Mutant
Length = 332
Score = 63.5 bits (153), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 58/123 (47%), Gaps = 7/123 (5%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
K V++GD GK+ L++ + F I F +S + V+ V +WDTAG
Sbjct: 157 KCVVVGDGAVGKTCLLISYTTNAF---PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGL 213
Query: 70 ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLL 128
E Y L P+ Y +I + + + ASF + KW E++ PN + L G K DL
Sbjct: 214 EDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHC-PNTPIILVGTKLDLR 272
Query: 129 DAR 131
D +
Sbjct: 273 DDK 275
>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2
Wildtype
Length = 332
Score = 63.5 bits (153), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 58/123 (47%), Gaps = 7/123 (5%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
K V++GD GK+ L++ + F I F +S + V+ V +WDTAG
Sbjct: 157 KCVVVGDGAVGKTCLLISYTTNAF---PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGL 213
Query: 70 ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLL 128
E Y L P+ Y +I + + + ASF + KW E++ PN + L G K DL
Sbjct: 214 EDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHC-PNTPIILVGTKLDLR 272
Query: 129 DAR 131
D +
Sbjct: 273 DDK 275
>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450a Mutant
Length = 332
Score = 63.5 bits (153), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 58/123 (47%), Gaps = 7/123 (5%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
K V++GD GK+ L++ + F I F +S + V+ V +WDTAG
Sbjct: 157 KCVVVGDGAVGKTCLLISYTTNAF---PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGL 213
Query: 70 ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLL 128
E Y L P+ Y +I + + + ASF + KW E++ PN + L G K DL
Sbjct: 214 EDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHC-PNTPIILVGTKLDLR 272
Query: 129 DAR 131
D +
Sbjct: 273 DDK 275
>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
pdb|2REX|D Chain D, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
Length = 197
Score = 63.5 bits (153), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 62/121 (51%), Gaps = 7/121 (5%)
Query: 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTA 67
KLVL+GDV GK++++ K + E+ + F ++ L + V+ +WDT+
Sbjct: 10 RCKLVLVGDVQCGKTAMLQVLAKDCY---PETYVPTVFENYTACLETEEQRVELSLWDTS 66
Query: 68 GQERYHSLAPMYYRGAAAAIIVYDITNQASFERA-KKWVQELQAQGNPNMVMALAGNKAD 126
G Y ++ P+ Y + A ++ +DI+ + + A KKW E+ P+ + L G K D
Sbjct: 67 GSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEI-LDYCPSTRVLLIGCKTD 125
Query: 127 L 127
L
Sbjct: 126 L 126
>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|3RAP|S Chain S, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|1KAO|A Chain A, Crystal Structure Of The Small G Protein Rap2a With Gdp
pdb|2RAP|A Chain A, The Small G Protein Rap2a In Complex With Gtp
Length = 167
Score = 63.2 bits (152), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 59/106 (55%), Gaps = 2/106 (1%)
Query: 23 KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
KS+L ++FV G FIE + TI F+ + + V+ + EI DTAG E++ S+ +Y +
Sbjct: 16 KSALTVQFVTGTFIEKYDPTI-EDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKN 74
Query: 83 AAAAIIVYDITNQASFERAKKWV-QELQAQGNPNMVMALAGNKADL 127
I+VY + NQ SF+ K Q ++ + + + L GNK DL
Sbjct: 75 GQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDL 120
>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras
Length = 166
Score = 63.2 bits (152), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 59/106 (55%), Gaps = 2/106 (1%)
Query: 23 KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
KS+L ++ ++ F+E + TI ++ Q + ++ T +I DTAGQE Y ++ Y R
Sbjct: 16 KSALTIQLIQNHFVEKYDPTIEDSYRKQ-VVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 83 AAAAIIVYDITNQASFERAKKWVQEL-QAQGNPNMVMALAGNKADL 127
+ V+ I N SFE ++ +++ + + + ++ M L GNK DL
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1
Length = 214
Score = 63.2 bits (152), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 62/121 (51%), Gaps = 7/121 (5%)
Query: 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTA 67
KLVL+GDV GK++++ K + E+ + F ++ L + V+ +WDT+
Sbjct: 27 RCKLVLVGDVQCGKTAMLQVLAKDCY---PETYVPTVFENYTACLETEEQRVELSLWDTS 83
Query: 68 GQERYHSLAPMYYRGAAAAIIVYDITNQASFERA-KKWVQELQAQGNPNMVMALAGNKAD 126
G Y ++ P+ Y + A ++ +DI+ + + A KKW E+ P+ + L G K D
Sbjct: 84 GSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEI-LDYCPSTRVLLIGCKTD 142
Query: 127 L 127
L
Sbjct: 143 L 143
>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
pdb|1A4R|A Chain A, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
Length = 191
Score = 63.2 bits (152), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 58/121 (47%), Gaps = 7/121 (5%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
K V++GDV GK+ L++ + +F + F ++ T+ + ++DTAGQ
Sbjct: 5 KCVVVGDVAVGKTCLLISYTTNKF---PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 61
Query: 70 ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLL 128
E Y L P+ Y ++ + + + +SFE K KWV E+ P L G + DL
Sbjct: 62 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLR 120
Query: 129 D 129
D
Sbjct: 121 D 121
>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REF|A Chain A, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REG|A Chain A, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
pdb|3REG|B Chain B, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
Length = 194
Score = 62.4 bits (150), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 53/101 (52%), Gaps = 6/101 (5%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
K+V++GD GK+ L+L F KG E + + F FS + + +WDTAGQ
Sbjct: 25 KIVVVGDGAVGKTCLLLAFSKG---EIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQ 81
Query: 70 ERYHSLAPMYYRGAAAAIIVYDITNQASFER-AKKWVQELQ 109
E Y L P+ Y + ++ + + N+ SF+ + KW E++
Sbjct: 82 EEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIK 122
>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To
Ehrho1-Gtpgammas
Length = 188
Score = 62.4 bits (150), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 60/119 (50%), Gaps = 7/119 (5%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
K+V++GD GK+ L+L F KG E + + F FS + + +WDTAGQ
Sbjct: 24 KIVVVGDGAVGKTCLLLAFSKG---EIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQ 80
Query: 70 ERYHSLAPMYYRGAAAAIIVYDITNQASFER-AKKWVQELQAQGNPNMVMALAGNKADL 127
E Y L P+ Y + ++ + + N+ SF+ + KW E++ + + L G K DL
Sbjct: 81 EEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTV-LVGLKVDL 138
>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
Length = 189
Score = 62.4 bits (150), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 59/106 (55%), Gaps = 2/106 (1%)
Query: 23 KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
KS+L ++ ++ F++ + TI ++ Q + ++ T +I DTAGQE Y ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 83 AAAAIIVYDITNQASFERAKKWVQELQ-AQGNPNMVMALAGNKADL 127
+ V+ I N SFE ++ ++++ + + ++ M L GNK DL
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 62.0 bits (149), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 59/106 (55%), Gaps = 2/106 (1%)
Query: 23 KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
KS+L ++ ++ F++ + TI ++ Q + ++ T +I DTAGQE Y ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEESYRKQ-VVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 83 AAAAIIVYDITNQASFERAKKWVQEL-QAQGNPNMVMALAGNKADL 127
+ V+ I N SFE ++ +++ + + + ++ M L GNK DL
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp
(State 1)
Length = 171
Score = 62.0 bits (149), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 59/106 (55%), Gaps = 2/106 (1%)
Query: 23 KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
KS+L ++ ++ F++ + TI ++ Q + ++ T +I DTAGQE Y ++ Y R
Sbjct: 21 KSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTAGQEEYSAMRDQYMRT 79
Query: 83 AAAAIIVYDITNQASFERAKKWVQEL-QAQGNPNMVMALAGNKADL 127
+ V+ I N SFE ++ +++ + + + ++ M L GNK DL
Sbjct: 80 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 125
>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp
(State 1)
Length = 171
Score = 62.0 bits (149), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 59/106 (55%), Gaps = 2/106 (1%)
Query: 23 KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
KS+L ++ ++ F++ + TI ++ Q + ++ T +I DTAGQE Y ++ Y R
Sbjct: 21 KSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTAGQEEYSAMRDQYMRT 79
Query: 83 AAAAIIVYDITNQASFERAKKWVQEL-QAQGNPNMVMALAGNKADL 127
+ V+ I N SFE ++ +++ + + + ++ M L GNK DL
Sbjct: 80 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 125
>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
pdb|1LFD|D Chain D, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
Length = 167
Score = 62.0 bits (149), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 59/106 (55%), Gaps = 2/106 (1%)
Query: 23 KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
KS+L ++ ++ F++ + TI ++ Q + ++ T +I DTAGQE Y ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDKYDPTIEDSYRKQ-VVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 83 AAAAIIVYDITNQASFERAKKWVQEL-QAQGNPNMVMALAGNKADL 127
+ V+ I N SFE ++ +++ + + + ++ M L GNK DL
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gppnhp
pdb|2CL6|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With S-Caged Gtp
pdb|2CL7|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp
pdb|2CLC|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp (2)
pdb|2EVW|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With R-Caged Gtp
pdb|2CE2|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp
Length = 166
Score = 62.0 bits (149), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 60/106 (56%), Gaps = 2/106 (1%)
Query: 23 KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
KS+L ++ ++ F++ + TI ++ Q + ++ T +I DTAGQE Y ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDECDPTIEDSYRKQ-VVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 83 AAAAIIVYDITNQASFERAKKWVQEL-QAQGNPNMVMALAGNKADL 127
+ V+ I N SFE ++ +++ + + + ++ M L GNK+DL
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDL 120
>pdb|1WQ1|R Chain R, Ras-Rasgap Complex
pdb|1BKD|R Chain R, Complex Of Human H-Ras With Human Sos-1
pdb|1CTQ|A Chain A, Structure Of P21ras In Complex With Gppnhp At 100 K
pdb|1QRA|A Chain A, Structure Of P21ras In Complex With Gtp At 100 K
pdb|1K8R|A Chain A, Crystal Structure Of Ras-Bry2rbd Complex
pdb|1NVV|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1P2S|A Chain A, H-Ras 166 In 50% 2,2,2 Triflouroethanol
pdb|1P2T|A Chain A, H-Ras 166 In Aqueous Mother Liqour, Rt
pdb|1P2U|A Chain A, H-Ras In 50% Isopropanol
pdb|1P2V|A Chain A, H-Ras 166 In 60 % 1,6 Hexanediol
pdb|1XD2|B Chain B, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
pdb|121P|A Chain A, Struktur Und Guanosintriphosphat-Hydrolysemechanismus Des
C- Terminal Verkuerzten Menschlichen Krebsproteins
P21-H-Ras
pdb|1CRP|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRQ|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRR|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1GNP|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNQ|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNR|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|5P21|A Chain A, Refined Crystal Structure Of The Triphosphate Conformation
Of H-Ras P21 At 1.35 Angstroms Resolution: Implications
For The Mechanism Of Gtp Hydrolysis
pdb|2RGE|A Chain A, Crystal Structure Of H-Ras-Gppnhp
pdb|3K8Y|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3LBH|A Chain A, Ras Soaked In Calcium Acetate
pdb|3LBI|A Chain A, Ras Soaked In Magnesium Acetate And Back Soaked In Calcium
A
pdb|3LBN|A Chain A, Ras Soaked In Magnesium Acetate
pdb|3KUD|A Chain A, Complex Of Ras-Gdp With Rafrbd(A85k)
pdb|3L8Y|A Chain A, Complex Of Ras With Cyclen
pdb|3L8Z|A Chain A, H-Ras Wildtype New Crystal Form
pdb|3RRY|A Chain A, H-Ras Crosslinked Control, Soaked In Aqueous Solution: One
Of 10 In Mscs Set
pdb|3RRZ|A Chain A, H-Ras In 70% Glycerol: One Of 10 In Mscs Set
pdb|3RS0|A Chain A, H-Ras Soaked In Neat Cyclopentanol: One Of 10 In Mscs Set
pdb|3RS2|A Chain A, H-Ras Soaked In 50% 2,2,2-Trifluoroethanol: One Of 10 In
Mscs Set
pdb|3RS3|A Chain A, H-Ras Soaked In Neat Hexane: 1 Of 10 In Mscs Set
pdb|3RS4|A Chain A, H-Ras Soaked In 60% 1,6-Hexanediol: 1 Of 10 In Mscs Set
pdb|3RS5|A Chain A, H-Ras Soaked In 55% Dimethylformamide: 1 Of 10 In Mscs Set
pdb|3RS7|A Chain A, H-Ras Soaked In 50% Isopropanol: 1 Of 10 In Mscs Set
pdb|3RSL|A Chain A, H-Ras Soaked In 90% R,S,R-Bisfuranol: One Of 10 In Mscs
Set
pdb|3RSO|A Chain A, H-Ras Soaked In 20% S,R,S-Bisfuranol: 1 Of 10 In Mscs Set
pdb|3TGP|A Chain A, Room Temperature H-Ras
pdb|4DLS|A Chain A, H-Ras Set 1 Cacl2 'mixed'
pdb|4DLT|A Chain A, H-Ras Set 2 Ca(Oac)2, On
pdb|4DLU|A Chain A, H-Ras Set 1 Ca(Oac)2, On
pdb|4DLW|A Chain A, H-Ras Set 2 Ca(Oac)2DTT, ON
Length = 166
Score = 62.0 bits (149), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 59/106 (55%), Gaps = 2/106 (1%)
Query: 23 KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
KS+L ++ ++ F++ + TI ++ Q + ++ T +I DTAGQE Y ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 83 AAAAIIVYDITNQASFERAKKWVQEL-QAQGNPNMVMALAGNKADL 127
+ V+ I N SFE ++ +++ + + + ++ M L GNK DL
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1HE8|B Chain B, Ras G12v-Pi 3-Kinase Gamma Complex
pdb|2UZI|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv Complex
pdb|2VH5|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv (Disulfide
Free Mutant) Complex
pdb|3OIV|A Chain A, H-Rasg12v With Allosteric Switch In The "off" State
pdb|3OIW|A Chain A, H-Rasg12v With Allosteric Switch In The "on" State
Length = 166
Score = 62.0 bits (149), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 59/106 (55%), Gaps = 2/106 (1%)
Query: 23 KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
KS+L ++ ++ F++ + TI ++ Q + ++ T +I DTAGQE Y ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 83 AAAAIIVYDITNQASFERAKKWVQEL-QAQGNPNMVMALAGNKADL 127
+ V+ I N SFE ++ +++ + + + ++ M L GNK DL
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|B Chain B, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|C Chain C, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|D Chain D, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|1IOZ|A Chain A, Crystal Structure Of The C-Ha-Ras Protein Prepared By The
Cell-Free Synthesis
pdb|1AA9|A Chain A, Human C-Ha-Ras(1-171)(Dot)gdp, Nmr, Minimized Average
Structure
pdb|1Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 62.0 bits (149), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 59/106 (55%), Gaps = 2/106 (1%)
Query: 23 KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
KS+L ++ ++ F++ + TI ++ Q + ++ T +I DTAGQE Y ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 83 AAAAIIVYDITNQASFERAKKWVQEL-QAQGNPNMVMALAGNKADL 127
+ V+ I N SFE ++ +++ + + + ++ M L GNK DL
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 62.0 bits (149), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 59/106 (55%), Gaps = 2/106 (1%)
Query: 23 KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
KS+L ++ ++ F++ + TI ++ Q + ++ T +I DTAGQE Y ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 83 AAAAIIVYDITNQASFERAKKWVQEL-QAQGNPNMVMALAGNKADL 127
+ V+ I N SFE ++ +++ + + + ++ M L GNK DL
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
>pdb|2CLD|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp (2)
Length = 166
Score = 62.0 bits (149), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 60/106 (56%), Gaps = 2/106 (1%)
Query: 23 KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
KS+L ++ ++ F++ + TI ++ Q + ++ T +I DTAGQE Y ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 83 AAAAIIVYDITNQASFERAKKWVQEL-QAQGNPNMVMALAGNKADL 127
+ V+ I N SFE ++ +++ + + + ++ M L GNK+DL
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDL 120
>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras
pdb|2C5L|B Chain B, Structure Of Plc Epsilon Ras Association Domain With Hras
Length = 173
Score = 62.0 bits (149), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 59/106 (55%), Gaps = 2/106 (1%)
Query: 23 KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
KS+L ++ ++ F++ + TI ++ Q + ++ T +I DTAGQE Y ++ Y R
Sbjct: 23 KSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTAGQEEYSAMRDQYMRT 81
Query: 83 AAAAIIVYDITNQASFERAKKWVQEL-QAQGNPNMVMALAGNKADL 127
+ V+ I N SFE ++ +++ + + + ++ M L GNK DL
Sbjct: 82 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 127
>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 61.6 bits (148), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 59/106 (55%), Gaps = 2/106 (1%)
Query: 23 KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
KS+L ++ ++ F++ + TI ++ Q + ++ T +I DTAGQE Y ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 83 AAAAIIVYDITNQASFERAKKWVQEL-QAQGNPNMVMALAGNKADL 127
+ V+ I N SFE ++ +++ + + + ++ M L GNK DL
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPY|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 61.6 bits (148), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 59/106 (55%), Gaps = 2/106 (1%)
Query: 23 KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
KS+L ++ ++ F++ + TI ++ Q + ++ T +I DTAGQE Y ++ Y R
Sbjct: 17 KSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTAGQEEYSAMRDQYMRT 75
Query: 83 AAAAIIVYDITNQASFERAKKWVQELQ-AQGNPNMVMALAGNKADL 127
+ V+ I N SFE + ++++ + + ++ M L GNK+DL
Sbjct: 76 GEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDL 121
>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPV|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPW|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 61.6 bits (148), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 59/106 (55%), Gaps = 2/106 (1%)
Query: 23 KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
KS+L ++ ++ F++ + TI ++ Q + ++ T +I DTAGQE Y ++ Y R
Sbjct: 17 KSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTAGQEEYSAMRDQYMRT 75
Query: 83 AAAAIIVYDITNQASFERAKKWVQELQ-AQGNPNMVMALAGNKADL 127
+ V+ I N SFE + ++++ + + ++ M L GNK+DL
Sbjct: 76 GEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDL 121
>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF
pdb|4DLR|A Chain A, H-Ras Peg 400CA(OAC)2, ORDERED OFF
pdb|4DLV|A Chain A, H-Ras Set 2 Cacl2DTT, ORDERED OFF
pdb|4DLX|A Chain A, H-Ras Set 1 Cacl2DTE, ORDERED OFF
pdb|4DLY|A Chain A, Set 1 Cacl2DTT, ORDERED OFF
pdb|4DLZ|A Chain A, H-Ras Set 2 Ca(Oac)2DTE, ORDERED OFF
Length = 166
Score = 61.6 bits (148), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 59/106 (55%), Gaps = 2/106 (1%)
Query: 23 KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
KS+L ++ ++ F++ + TI ++ Q + ++ T +I DTAGQE Y ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTAGQEEYSAMRDEYMRT 74
Query: 83 AAAAIIVYDITNQASFERAKKWVQEL-QAQGNPNMVMALAGNKADL 127
+ V+ I N SFE ++ +++ + + + ++ M L GNK DL
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras,
In The Gdp- Bound State
Length = 181
Score = 61.2 bits (147), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 67/118 (56%), Gaps = 3/118 (2%)
Query: 23 KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
KS+L ++F++ F+ + TI ++ ++ +V+ + +I DTAGQE + ++ Y R
Sbjct: 22 KSALTIQFIQSYFVSDYDPTIEDSY-TKICSVDGIPARLDILDTAGQEEFGAMREQYMRA 80
Query: 83 AAAAIIVYDITNQASF-ERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVT-AEAS 138
++V+ I ++ SF E K + Q L+ + + + L GNKADL R+V +EAS
Sbjct: 81 GHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEAS 138
>pdb|2KB0|A Chain A, Cdc42(T35a)
Length = 178
Score = 61.2 bits (147), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 58/121 (47%), Gaps = 7/121 (5%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
K V++GD GK+ L++ + +F + A F ++ T+ + ++DTAGQ
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKF---PSEYVPAVFDNYAVTVMIGGEPYTLGLFDTAGQ 61
Query: 70 ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLL 128
E Y L P+ Y ++ + + + +SFE K KWV E+ P L G + DL
Sbjct: 62 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLR 120
Query: 129 D 129
D
Sbjct: 121 D 121
>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|B Chain B, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|C Chain C, Allosteric Modulation Of H-Ras Gtpase
Length = 166
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 59/106 (55%), Gaps = 2/106 (1%)
Query: 23 KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
KS+L ++ ++ F++ + TI ++ Q + ++ T +I DTAGQE Y ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEFDPTIEDSYRKQ-VVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 83 AAAAIIVYDITNQASFERAKKWVQEL-QAQGNPNMVMALAGNKADL 127
+ V+ I N SFE ++ +++ + + + ++ M L GNK DL
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 59/106 (55%), Gaps = 2/106 (1%)
Query: 23 KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
KS+L ++ ++ F++ + TI ++ Q + ++ T +I DTAGQE Y ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 83 AAAAIIVYDITNQASFERAKKWVQEL-QAQGNPNMVMALAGNKADL 127
+ V+ I N SFE ++ +++ + + + ++ M L GN+ DL
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNRCDL 120
>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures
Length = 194
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 63/132 (47%), Gaps = 11/132 (8%)
Query: 5 GNKNINA----KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDAT 58
G+K I+A K V++GD GK+ L++ + +F + F ++ T+ +
Sbjct: 1 GSKIISAMQTIKCVVVGDGAVGKTCLLISYTTNKF---PSEYVPTVFDNYAVTVMIGGEP 57
Query: 59 VKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMV 117
++DTAGQE Y L P+ Y ++ + + + +SFE K KWV E+ P
Sbjct: 58 YTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTP 116
Query: 118 MALAGNKADLLD 129
L G + DL D
Sbjct: 117 FLLVGTQIDLRD 128
>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|3KKN|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|2LCF|A Chain A, Solution Structure Of Gppnhp-Bound H-Rast35s Mutant
Protein
Length = 172
Score = 60.5 bits (145), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 59/106 (55%), Gaps = 2/106 (1%)
Query: 23 KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
KS+L ++ ++ F++ + +I ++ Q + ++ T +I DTAGQE Y ++ Y R
Sbjct: 22 KSALTIQLIQNHFVDEYDPSIEDSYRKQ-VVIDGETCLLDILDTAGQEEYSAMRDQYMRT 80
Query: 83 AAAAIIVYDITNQASFERAKKWVQEL-QAQGNPNMVMALAGNKADL 127
+ V+ I N SFE ++ +++ + + + ++ M L GNK DL
Sbjct: 81 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 126
>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|C Chain C, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|E Chain E, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
Length = 166
Score = 60.5 bits (145), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 59/106 (55%), Gaps = 2/106 (1%)
Query: 23 KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
K++L ++ ++ F++ + TI ++ Q + ++ T +I DTAGQE Y ++ Y R
Sbjct: 16 KNALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 83 AAAAIIVYDITNQASFERAKKWVQEL-QAQGNPNMVMALAGNKADL 127
+ V+ I N SFE ++ +++ + + + ++ M L GNK DL
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYF|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
Length = 203
Score = 60.5 bits (145), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 62/142 (43%), Gaps = 26/142 (18%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
K V++GD GK+ L++ + F I F +S + V+ V +WDTAGQ
Sbjct: 7 KCVVVGDGAVGKTCLLISYTTNAF---PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 63
Query: 70 ERYHSLAPMYY--------------RGAAAAI-----IVYDITNQASFERAK-KWVQELQ 109
E Y L P+ Y RG I I + + + ASFE + KW E++
Sbjct: 64 EDYDRLRPLSYPQTVGETYGKDITSRGKDKPIADVFLICFSLVSPASFENVRAKWYPEVR 123
Query: 110 AQGNPNMVMALAGNKADLLDAR 131
PN + L G K DL D +
Sbjct: 124 HH-CPNTPIILVGTKLDLRDDK 144
>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 60.5 bits (145), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 58/106 (54%), Gaps = 2/106 (1%)
Query: 23 KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
KS+L ++ ++ F++ + TI ++ Q + ++ T +I DT GQE Y ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTTGQEEYSAMRDQYMRT 74
Query: 83 AAAAIIVYDITNQASFERAKKWVQEL-QAQGNPNMVMALAGNKADL 127
+ V+ I N SFE ++ +++ + + + ++ M L GNK DL
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|B Chain B, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|C Chain C, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
Length = 166
Score = 60.5 bits (145), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 59/106 (55%), Gaps = 2/106 (1%)
Query: 23 KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
KS+L ++ ++ F++ + +I ++ Q + ++ T +I DTAGQE Y ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPSIEDSYRKQ-VVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 83 AAAAIIVYDITNQASFERAKKWVQEL-QAQGNPNMVMALAGNKADL 127
+ V+ I N SFE ++ +++ + + + ++ M L GNK DL
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form
pdb|1LF5|A Chain A, Crystal Structure Of Rasa59g In The Gdp-Bound Form
pdb|1NVU|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVU|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
Length = 166
Score = 60.5 bits (145), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 58/106 (54%), Gaps = 2/106 (1%)
Query: 23 KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
KS+L ++ ++ F++ + TI ++ Q + ++ T +I DT GQE Y ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTGGQEEYSAMRDQYMRT 74
Query: 83 AAAAIIVYDITNQASFERAKKWVQEL-QAQGNPNMVMALAGNKADL 127
+ V+ I N SFE ++ +++ + + + ++ M L GNK DL
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 60.5 bits (145), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 58/106 (54%), Gaps = 2/106 (1%)
Query: 23 KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
KS+L ++ ++ F++ + TI ++ Q + ++ T +I DTAG E Y ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTAGHEEYSAMRDQYMRT 74
Query: 83 AAAAIIVYDITNQASFERAKKWVQEL-QAQGNPNMVMALAGNKADL 127
+ V+ I N SFE ++ +++ + + + ++ M L GNK DL
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp
Length = 166
Score = 60.5 bits (145), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 59/106 (55%), Gaps = 2/106 (1%)
Query: 23 KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
KS+L ++ ++ F++ + TI ++ Q + ++ T +I DTAG+E Y ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTAGKEEYSAMRDQYMRT 74
Query: 83 AAAAIIVYDITNQASFERAKKWVQEL-QAQGNPNMVMALAGNKADL 127
+ V+ I N SFE ++ +++ + + + ++ M L GNK DL
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC2|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
Length = 208
Score = 60.1 bits (144), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 64/132 (48%), Gaps = 9/132 (6%)
Query: 8 NINAKLVLLGDVGAGKSSLVLRFV-KG-QFIEFQESTIGAAFFSQTLAVNDATVKFEIW- 64
+ K+ ++G+ GKS+L+ F KG +F++ T G + + D TV E++
Sbjct: 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFL 77
Query: 65 -DTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPN----MVMA 119
DTAG + Y Y+ G AI+V+D+++ SFE K W EL P+ +
Sbjct: 78 LDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWF-ELLKSARPDRERPLRAV 136
Query: 120 LAGNKADLLDAR 131
L NK DL R
Sbjct: 137 LVANKTDLPPQR 148
>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex
pdb|1AN0|B Chain B, Cdc42hs-Gdp Complex
Length = 190
Score = 60.1 bits (144), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 57/121 (47%), Gaps = 7/121 (5%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
K V++GD GK+ L++ + +F + F ++ T+ + ++DTAGQ
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKF---PSEYVPTVFDNYAVTVXIGGEPYTLGLFDTAGQ 61
Query: 70 ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLL 128
E Y L P+ Y ++ + + + +SFE K KWV E+ P L G + DL
Sbjct: 62 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLR 120
Query: 129 D 129
D
Sbjct: 121 D 121
>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
pdb|3EG5|C Chain C, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
Length = 178
Score = 59.7 bits (143), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 57/121 (47%), Gaps = 7/121 (5%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
K V++GD GK+ L++ + +F + F ++ T+ + ++DTAGQ
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKF---PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 61
Query: 70 ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLL 128
E Y L P+ Y ++ + + + +SFE K KWV E+ P L G + DL
Sbjct: 62 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLR 120
Query: 129 D 129
D
Sbjct: 121 D 121
>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|B Chain B, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|C Chain C, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|D Chain D, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|E Chain E, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|F Chain F, Human K-Ras In Complex With A Gtp Analogue
Length = 187
Score = 59.7 bits (143), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 57/106 (53%), Gaps = 2/106 (1%)
Query: 23 KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
KS+L ++ ++ F++ + TI ++ Q + ++ T +I DTAG E Y ++ Y R
Sbjct: 34 KSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTAGHEEYSAMRDQYMRT 92
Query: 83 AAAAIIVYDITNQASFERAKKWVQEL-QAQGNPNMVMALAGNKADL 127
+ V+ I N SFE + +++ + + + ++ M L GNK DL
Sbjct: 93 GEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDL 138
>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex
Length = 182
Score = 59.7 bits (143), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 57/121 (47%), Gaps = 7/121 (5%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
K V++GD GK+ L++ + +F + F ++ T+ + ++DTAGQ
Sbjct: 9 KCVVVGDGAVGKTCLLISYTTNKF---PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 65
Query: 70 ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLL 128
E Y L P+ Y ++ + + + +SFE K KWV E+ P L G + DL
Sbjct: 66 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLR 124
Query: 129 D 129
D
Sbjct: 125 D 125
>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide
Derived From P-21 Activated Kinase, Nmr, 20 Structures
Length = 178
Score = 59.7 bits (143), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 57/121 (47%), Gaps = 7/121 (5%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
K V++GD GK+ L++ + +F + F ++ T+ + ++DTAGQ
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKF---PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 61
Query: 70 ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLL 128
E Y L P+ Y ++ + + + +SFE K KWV E+ P L G + DL
Sbjct: 62 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLR 120
Query: 129 D 129
D
Sbjct: 121 D 121
>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase
Binding Domain Of Wasp
Length = 179
Score = 59.7 bits (143), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 57/121 (47%), Gaps = 7/121 (5%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
K V++GD GK+ L++ + +F + F ++ T+ + ++DTAGQ
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKF---PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 61
Query: 70 ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLL 128
E Y L P+ Y ++ + + + +SFE K KWV E+ P L G + DL
Sbjct: 62 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLR 120
Query: 129 D 129
D
Sbjct: 121 D 121
>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex
pdb|2DFK|D Chain D, Crystal Structure Of The Cdc42-Collybistin Ii Complex
Length = 194
Score = 59.7 bits (143), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 57/121 (47%), Gaps = 7/121 (5%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
K V++GD GK+ L++ + +F + F ++ T+ + ++DTAGQ
Sbjct: 8 KCVVVGDGAVGKTCLLISYTTNKF---PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 64
Query: 70 ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLL 128
E Y L P+ Y ++ + + + +SFE K KWV E+ P L G + DL
Sbjct: 65 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLR 123
Query: 129 D 129
D
Sbjct: 124 D 124
>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.
pdb|2NGR|A Chain A, Transition State Complex For Gtp Hydrolysis By Cdc42:
Comparisons Of The High Resolution Structures For Cdc42
Bound To The Active And Catalytically Compromised Forms
Of The Cdc42-gap.
pdb|4ITR|C Chain C, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
pdb|4ITR|D Chain D, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
Length = 191
Score = 59.7 bits (143), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 57/121 (47%), Gaps = 7/121 (5%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
K V++GD GK+ L++ + +F + F ++ T+ + ++DTAGQ
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKF---PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 61
Query: 70 ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLL 128
E Y L P+ Y ++ + + + +SFE K KWV E+ P L G + DL
Sbjct: 62 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLR 120
Query: 129 D 129
D
Sbjct: 121 D 121
>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|E Chain E, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|F Chain F, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
Length = 177
Score = 59.7 bits (143), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 57/121 (47%), Gaps = 7/121 (5%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
K V++GD GK+ L++ + +F + F ++ T+ + ++DTAGQ
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKF---PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 61
Query: 70 ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLL 128
E Y L P+ Y ++ + + + +SFE K KWV E+ P L G + DL
Sbjct: 62 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLR 120
Query: 129 D 129
D
Sbjct: 121 D 121
>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42.
pdb|2WMN|B Chain B, Structure Of The Complex Between Dock9 And Cdc42-Gdp.
pdb|2WMO|B Chain B, Structure Of The Complex Between Dock9 And Cdc42
Length = 190
Score = 59.7 bits (143), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 57/121 (47%), Gaps = 7/121 (5%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
K V++GD GK+ L++ + +F + F ++ T+ + ++DTAGQ
Sbjct: 7 KCVVVGDGAVGKTCLLISYTTNKF---PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 63
Query: 70 ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLL 128
E Y L P+ Y ++ + + + +SFE K KWV E+ P L G + DL
Sbjct: 64 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLR 122
Query: 129 D 129
D
Sbjct: 123 D 123
>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
pdb|2QRZ|B Chain B, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
Length = 189
Score = 59.7 bits (143), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 57/121 (47%), Gaps = 7/121 (5%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
K V++GD GK+ L++ + +F + F ++ T+ + ++DTAGQ
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKF---PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 61
Query: 70 ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLL 128
E Y L P+ Y ++ + + + +SFE K KWV E+ P L G + DL
Sbjct: 62 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLR 120
Query: 129 D 129
D
Sbjct: 121 D 121
>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The
Crib Domain Of Human P21-Activated Kinase 6 (Pak6)
Length = 192
Score = 59.7 bits (143), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 57/121 (47%), Gaps = 7/121 (5%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
K V++GD GK+ L++ + +F + F ++ T+ + ++DTAGQ
Sbjct: 6 KCVVVGDGAVGKTCLLISYTTNKF---PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 62
Query: 70 ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLL 128
E Y L P+ Y ++ + + + +SFE K KWV E+ P L G + DL
Sbjct: 63 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLR 121
Query: 129 D 129
D
Sbjct: 122 D 122
>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By
Isoleucine
Length = 166
Score = 59.7 bits (143), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 58/106 (54%), Gaps = 2/106 (1%)
Query: 23 KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
KS+L ++ ++ F++ + TI ++ Q + ++ +I DTAGQE Y ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGEICLLDILDTAGQEEYSAMRDQYMRT 74
Query: 83 AAAAIIVYDITNQASFERAKKWVQEL-QAQGNPNMVMALAGNKADL 127
+ V+ I N SFE ++ +++ + + + ++ M L GNK DL
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain
Sopb In Complex With Cdc42
Length = 193
Score = 59.7 bits (143), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 57/121 (47%), Gaps = 7/121 (5%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
K V++GD GK+ L++ + +F + F ++ T+ + ++DTAGQ
Sbjct: 15 KCVVVGDGAVGKTCLLISYTTNKF---PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 71
Query: 70 ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLL 128
E Y L P+ Y ++ + + + +SFE K KWV E+ P L G + DL
Sbjct: 72 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLR 130
Query: 129 D 129
D
Sbjct: 131 D 131
>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
pdb|1GZS|C Chain C, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
Length = 180
Score = 59.7 bits (143), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 57/121 (47%), Gaps = 7/121 (5%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
K V++GD GK+ L++ + +F + F ++ T+ + ++DTAGQ
Sbjct: 7 KCVVVGDGAVGKTCLLISYTTNKF---PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 63
Query: 70 ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLL 128
E Y L P+ Y ++ + + + +SFE K KWV E+ P L G + DL
Sbjct: 64 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLR 122
Query: 129 D 129
D
Sbjct: 123 D 123
>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZ7|D Chain D, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZG|B Chain B, Dbscdc42(Y889f)
pdb|1KZG|D Chain D, Dbscdc42(Y889f)
pdb|1KI1|A Chain A, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
pdb|1KI1|C Chain C, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
Length = 188
Score = 59.7 bits (143), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 57/121 (47%), Gaps = 7/121 (5%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
K V++GD GK+ L++ + +F + F ++ T+ + ++DTAGQ
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKF---PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 61
Query: 70 ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLL 128
E Y L P+ Y ++ + + + +SFE K KWV E+ P L G + DL
Sbjct: 62 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLR 120
Query: 129 D 129
D
Sbjct: 121 D 121
>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In
Complex With The Multifunctional Regulator Rhogdi
Length = 191
Score = 59.7 bits (143), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 57/121 (47%), Gaps = 7/121 (5%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
K V++GD GK+ L++ + +F + F ++ T+ + ++DTAGQ
Sbjct: 8 KCVVVGDGAVGKTCLLISYTTNKF---PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 64
Query: 70 ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLL 128
E Y L P+ Y ++ + + + +SFE K KWV E+ P L G + DL
Sbjct: 65 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLR 123
Query: 129 D 129
D
Sbjct: 124 D 124
>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex
With Cdc42 (T17n Mutant)
Length = 195
Score = 58.9 bits (141), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 57/121 (47%), Gaps = 7/121 (5%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
K V++GD GK+ L++ + +F + F ++ T+ + ++DTAGQ
Sbjct: 12 KCVVVGDGAVGKNCLLISYTTNKF---PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 68
Query: 70 ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLL 128
E Y L P+ Y ++ + + + +SFE K KWV E+ P L G + DL
Sbjct: 69 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLR 127
Query: 129 D 129
D
Sbjct: 128 D 128
>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|B Chain B, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|C Chain C, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|D Chain D, The Crystal Structure Of Rem1 In Complex With Gdp
Length = 175
Score = 58.9 bits (141), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 68/129 (52%), Gaps = 6/129 (4%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVN--DAT-VKFEIWDTAG 68
++VLLGD G GK+SL F Q + E +G + +TL V+ D T V + W+
Sbjct: 6 RVVLLGDPGVGKTSLASLFAGKQERDLHEQ-LGEDVYERTLTVDGEDTTLVVVDTWEAEK 64
Query: 69 QERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMV-MALAGNKADL 127
++ S +G +A +IVY I ++ SFE A + +L+ + V + L GNKADL
Sbjct: 65 LDKSWSQESC-LQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADL 123
Query: 128 LDARKVTAE 136
R+V+ E
Sbjct: 124 ARCREVSVE 132
>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp
(State 1)
Length = 171
Score = 58.9 bits (141), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 58/106 (54%), Gaps = 2/106 (1%)
Query: 23 KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
KS+L ++ ++ F++ + TI ++ Q + ++ T +I DTAG E Y ++ Y R
Sbjct: 21 KSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTAGLEEYSAMRDQYMRT 79
Query: 83 AAAAIIVYDITNQASFERAKKWVQEL-QAQGNPNMVMALAGNKADL 127
+ V+ I N SFE ++ +++ + + + ++ M L GNK DL
Sbjct: 80 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 125
>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form
Length = 166
Score = 58.9 bits (141), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 58/106 (54%), Gaps = 2/106 (1%)
Query: 23 KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
KS+L ++ ++ F++ + TI ++ Q + ++ T +I DTAG E Y ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTAGGEEYSAMRDQYMRT 74
Query: 83 AAAAIIVYDITNQASFERAKKWVQEL-QAQGNPNMVMALAGNKADL 127
+ V+ I N SFE ++ +++ + + + ++ M L GNK DL
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
pdb|2RGD|A Chain A, Crystal Structure Of H-Rasq61l-Gppnhp
pdb|3OIU|A Chain A, H-Rasq61l With Allosteric Switch In The "on" State
Length = 166
Score = 58.9 bits (141), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 58/106 (54%), Gaps = 2/106 (1%)
Query: 23 KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
KS+L ++ ++ F++ + TI ++ Q + ++ T +I DTAG E Y ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTAGLEEYSAMRDQYMRT 74
Query: 83 AAAAIIVYDITNQASFERAKKWVQEL-QAQGNPNMVMALAGNKADL 127
+ V+ I N SFE ++ +++ + + + ++ M L GNK DL
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp
Length = 166
Score = 58.5 bits (140), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 58/106 (54%), Gaps = 2/106 (1%)
Query: 23 KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
KS+L ++ ++ F++ + TI ++ Q + ++ T +I DTAG E Y ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTAGVEEYSAMRDQYMRT 74
Query: 83 AAAAIIVYDITNQASFERAKKWVQEL-QAQGNPNMVMALAGNKADL 127
+ V+ I N SFE ++ +++ + + + ++ M L GNK DL
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a
Mutant
Length = 166
Score = 58.5 bits (140), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 58/106 (54%), Gaps = 2/106 (1%)
Query: 23 KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
KS+L ++ ++ F++ + TI ++ Q + ++ T +I DTA QE Y ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTAAQEEYSAMRDQYMRT 74
Query: 83 AAAAIIVYDITNQASFERAKKWVQEL-QAQGNPNMVMALAGNKADL 127
+ V+ I N SFE ++ +++ + + + ++ M L GNK DL
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKXDL 120
>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant
Length = 167
Score = 58.5 bits (140), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 58/106 (54%), Gaps = 2/106 (1%)
Query: 23 KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
KS+L ++ ++ F++ + TI ++ Q + ++ T +I DTA QE Y ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTAAQEEYSAMRDQYMRT 74
Query: 83 AAAAIIVYDITNQASFERAKKWVQEL-QAQGNPNMVMALAGNKADL 127
+ V+ I N SFE ++ +++ + + + ++ M L GNK DL
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKXDL 120
>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp
pdb|2RGG|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp, Trigonal Crystal
Form
Length = 166
Score = 58.5 bits (140), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 58/106 (54%), Gaps = 2/106 (1%)
Query: 23 KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
KS+L ++ ++ F++ + TI ++ Q + ++ T +I DTAG E Y ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTAGIEEYSAMRDQYMRT 74
Query: 83 AAAAIIVYDITNQASFERAKKWVQEL-QAQGNPNMVMALAGNKADL 127
+ V+ I N SFE ++ +++ + + + ++ M L GNK DL
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
pdb|3QBV|C Chain C, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
Length = 178
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 56/121 (46%), Gaps = 7/121 (5%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
K V++GD GK+ L++ + +F + F ++ T+ + + DTAGQ
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKF---PSEYVPTVFDNYAVTVMIGGEPYTLGLRDTAGQ 61
Query: 70 ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLL 128
E Y L P+ Y ++ + + + +SFE K KWV E+ P L G + DL
Sbjct: 62 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLR 120
Query: 129 D 129
D
Sbjct: 121 D 121
>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
Length = 188
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 69/135 (51%), Gaps = 14/135 (10%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
+L L+G +GK++ V GQF E T+G F + + + T+K +WD GQ R
Sbjct: 24 ELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVG--FNMRKITKGNVTIK--LWDIGGQPR 79
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQEL----QAQGNPNMVMALAGNKADL 127
+ S+ Y RG +A + + D +Q E +K + L Q QG P +V+ GNK DL
Sbjct: 80 FRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVL---GNKRDL 136
Query: 128 ---LDARKVTAEASI 139
LD +++ + ++
Sbjct: 137 PGALDEKELIEKMNL 151
>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g
Length = 166
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 58/106 (54%), Gaps = 2/106 (1%)
Query: 23 KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
KS+L ++ ++ F++ + TI ++ Q + ++ T +I DTAG E Y ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETXLLDILDTAGGEEYSAMRDQYMRT 74
Query: 83 AAAAIIVYDITNQASFERAKKWVQEL-QAQGNPNMVMALAGNKADL 127
+ V+ I N SFE ++ +++ + + + ++ M L GNK DL
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1XD2|A Chain A, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
Length = 166
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 58/106 (54%), Gaps = 2/106 (1%)
Query: 23 KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
KS+L ++ ++ F++ + TI ++ Q + ++ T +I DTAGQE ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTAGQEEASAMRDQYMRT 74
Query: 83 AAAAIIVYDITNQASFERAKKWVQEL-QAQGNPNMVMALAGNKADL 127
+ V+ I N SFE ++ +++ + + + ++ M L GNK DL
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp
pdb|2HT6|B Chain B, Crystal Structure Of Human Gem G-Domain Bound To Gdp
Length = 174
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 74/135 (54%), Gaps = 7/135 (5%)
Query: 5 GNKNINAKLVLLGDVGAGKSSLVLRFVK-GQFIEFQESTIGAAFFSQTLAVNDAT---VK 60
G+ N ++VL+G+ G GKS+L F ++ +G + +TL V+ + +
Sbjct: 1 GSGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIIL 60
Query: 61 FEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKW-VQELQAQGNPNMVMA 119
++W+ G+ + L + A +IVY IT++ASFE+A + +Q +A+ ++ +
Sbjct: 61 LDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPII 118
Query: 120 LAGNKADLLDARKVT 134
L GNK+DL+ R+V+
Sbjct: 119 LVGNKSDLVRCREVS 133
>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
(Arl10b)
Length = 193
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 69/135 (51%), Gaps = 14/135 (10%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
+L L+G +GK++ V GQF E T+G F + + + T+K +WD GQ R
Sbjct: 33 ELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVG--FNMRKITKGNVTIK--LWDIGGQPR 88
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQEL----QAQGNPNMVMALAGNKADL 127
+ S+ Y RG +A + + D +Q E +K + L Q QG P +V+ GNK DL
Sbjct: 89 FRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVL---GNKRDL 145
Query: 128 ---LDARKVTAEASI 139
LD +++ + ++
Sbjct: 146 PGALDEKELIEKMNL 160
>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp
Length = 190
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 57/106 (53%), Gaps = 2/106 (1%)
Query: 23 KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
KS+L ++ ++ F++ + TI ++ Q + ++ T +I DTAGQE Y ++ Y R
Sbjct: 34 KSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTAGQEEYSAMRDQYMRT 92
Query: 83 AAAAIIVYDITNQASFERAKKWVQEL-QAQGNPNMVMALAGNKADL 127
+ V+ I N SF + +++ + + + ++ M L GNK DL
Sbjct: 93 GEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDL 138
>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs
Length = 178
Score = 57.4 bits (137), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 56/121 (46%), Gaps = 7/121 (5%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
K V++GD GK+ L++ + + + F ++ T+ + ++DTAGQ
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKL---PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 61
Query: 70 ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLL 128
E Y L P+ Y ++ + + + +SFE K KWV E+ P L G + DL
Sbjct: 62 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLR 120
Query: 129 D 129
D
Sbjct: 121 D 121
>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex
pdb|1E0A|A Chain A, Cdc42 Complexed With The Gtpase Binding Domain Of P21
Activated Kinase
Length = 184
Score = 56.6 bits (135), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 56/121 (46%), Gaps = 7/121 (5%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
K V++GD GK+ L++ + +F + F ++ T+ + ++DTAG
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKF---PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGL 61
Query: 70 ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLL 128
E Y L P+ Y ++ + + + +SFE K KWV E+ P L G + DL
Sbjct: 62 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLR 120
Query: 129 D 129
D
Sbjct: 121 D 121
>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
pdb|1NF3|B Chain B, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
Length = 195
Score = 56.6 bits (135), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 56/121 (46%), Gaps = 7/121 (5%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
K V++GD GK+ L++ + +F + F ++ T+ + ++DTAG
Sbjct: 9 KCVVVGDGAVGKTCLLISYTTNKF---PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGL 65
Query: 70 ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLL 128
E Y L P+ Y ++ + + + +SFE K KWV E+ P L G + DL
Sbjct: 66 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLR 124
Query: 129 D 129
D
Sbjct: 125 D 125
>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem
Length = 211
Score = 56.2 bits (134), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 72/132 (54%), Gaps = 7/132 (5%)
Query: 8 NINAKLVLLGDVGAGKSSLVLRFVK-GQFIEFQESTIGAAFFSQTLAVNDAT---VKFEI 63
N ++VL+G+ G GKS+L F ++ +G + +TL V+ + + ++
Sbjct: 35 NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDM 94
Query: 64 WDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKW-VQELQAQGNPNMVMALAG 122
W+ G+ + L + A +IVY IT++ASFE+A + +Q +A+ ++ + L G
Sbjct: 95 WENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVG 152
Query: 123 NKADLLDARKVT 134
NK+DL+ R+V+
Sbjct: 153 NKSDLVRCREVS 164
>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c
Length = 186
Score = 55.8 bits (133), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 62/123 (50%), Gaps = 11/123 (8%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
+L L+G +GK++ V GQF E T+G F + + + T+K IWD GQ R
Sbjct: 24 ELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVG--FNMRKVTKGNVTIK--IWDIGGQPR 79
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQEL----QAQGNPNMVMALAGNKADL 127
+ S+ Y RG A + + D ++ E ++ + L Q QG P +V+ GNK DL
Sbjct: 80 FRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVL---GNKRDL 136
Query: 128 LDA 130
+A
Sbjct: 137 PNA 139
>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 71/128 (55%), Gaps = 7/128 (5%)
Query: 12 KLVLLGDVGAGKSSLVLRFVK-GQFIEFQESTIGAAFFSQTLAVNDAT---VKFEIWDTA 67
++VL+G+ G GKS+L F ++ +G + +TL V+ + + ++W+
Sbjct: 8 RVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENK 67
Query: 68 GQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKW-VQELQAQGNPNMVMALAGNKAD 126
G+ + L + A +IVY IT++ASFE+A + +Q +A+ ++ + L GNK+D
Sbjct: 68 GENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSD 125
Query: 127 LLDARKVT 134
L+ R+V+
Sbjct: 126 LVRXREVS 133
>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 71/128 (55%), Gaps = 7/128 (5%)
Query: 12 KLVLLGDVGAGKSSLVLRFVK-GQFIEFQESTIGAAFFSQTLAVNDAT---VKFEIWDTA 67
++VL+G+ G GKS+L F ++ +G + +TL V+ + + ++W+
Sbjct: 8 RVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENK 67
Query: 68 GQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKW-VQELQAQGNPNMVMALAGNKAD 126
G+ + L + A +IVY IT++ASFE+A + +Q +A+ ++ + L GNK+D
Sbjct: 68 GENEW--LHDHXMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSD 125
Query: 127 LLDARKVT 134
L+ R+V+
Sbjct: 126 LVRXREVS 133
>pdb|2ZEJ|A Chain A, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
pdb|2ZEJ|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 184
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 69/133 (51%), Gaps = 7/133 (5%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEF--QESTIGAAFFSQTLAVNDATVK---FEIWDT 66
KL ++G+ G+GK++L+ + K + + Q +T+G + + D + +WD
Sbjct: 4 KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDF 63
Query: 67 AGQERYHSLAPMYYRGAAAAIIVYDITN-QASFERAKKWVQELQAQGNPNMVMALAGNKA 125
AG+E ++S P + A + VYD++ QA + K W+ ++A+ + + V+ L G
Sbjct: 64 AGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSSPVI-LVGTHL 122
Query: 126 DLLDARKVTAEAS 138
D+ D ++ A S
Sbjct: 123 DVSDEKQRKACXS 135
>pdb|3D6T|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-Associated Leucine-Rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 171
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 69/133 (51%), Gaps = 7/133 (5%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEF--QESTIGAAFFSQTLAVNDATVK---FEIWDT 66
KL ++G+ G+GK++L+ + K + + Q +T+G + + D + +WD
Sbjct: 2 KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDF 61
Query: 67 AGQERYHSLAPMYYRGAAAAIIVYDITN-QASFERAKKWVQELQAQGNPNMVMALAGNKA 125
AG+E ++S P + A + VYD++ QA + K W+ ++A+ + + V+ L G
Sbjct: 62 AGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSSPVI-LVGTHL 120
Query: 126 DLLDARKVTAEAS 138
D+ D ++ A S
Sbjct: 121 DVSDEKQRKACXS 133
>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By
Human Arf6-Gtp
pdb|2A5F|A Chain A, Cholera Toxin A1 Subunit Bound To Its Substrate, Nad+, And
Its Human Protein Activator, Arf6
pdb|2J5X|A Chain A, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
pdb|2J5X|B Chain B, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
Length = 175
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 64/132 (48%), Gaps = 14/132 (10%)
Query: 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIW 64
GNK + ++++LG AGK++++ + GQ + +TI F+ V VKF +W
Sbjct: 10 GNKEM--RILMLGLDAAGKTTILYKLKLGQSV----TTIPTVGFN-VETVTYKNVKFNVW 62
Query: 65 DTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNP----NMVMAL 120
D GQ++ L YY G I V D ++ + A+ QEL N + ++ +
Sbjct: 63 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR---QELHRIINDREMRDAIILI 119
Query: 121 AGNKADLLDARK 132
NK DL DA K
Sbjct: 120 FANKQDLPDAMK 131
>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp
Length = 174
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 64/132 (48%), Gaps = 14/132 (10%)
Query: 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIW 64
GNK + ++++LG AGK++++ + GQ + +TI F+ V VKF +W
Sbjct: 9 GNKEM--RILMLGLDAAGKTTILYKLKLGQSV----TTIPTVGFN-VETVTYKNVKFNVW 61
Query: 65 DTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNP----NMVMAL 120
D GQ++ L YY G I V D ++ + A+ QEL N + ++ +
Sbjct: 62 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR---QELHRIINDREMRDAIILI 118
Query: 121 AGNKADLLDARK 132
NK DL DA K
Sbjct: 119 FANKQDLPDAMK 130
>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2
(Scarf2) Complexed With Gdp-3'p At 1.6a Resolution
Length = 181
Score = 53.1 bits (126), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 64/127 (50%), Gaps = 8/127 (6%)
Query: 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIW 64
GNK + +++++G GAGK++++ + G+ I +TI F+ V + F +W
Sbjct: 14 GNKEM--RILMVGLDGAGKTTVLYKLKLGEVI----TTIPTIGFN-VETVQYKNISFTVW 66
Query: 65 DTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGN-PNMVMALAGN 123
D GQ+R SL YYR I V D +++ A++ +Q + + N V + N
Sbjct: 67 DVGGQDRIRSLWRHYYRNTEGVIFVIDSNDRSRIGEAREVMQRMLNEDELRNAVWLVFAN 126
Query: 124 KADLLDA 130
K DL +A
Sbjct: 127 KQDLPEA 133
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 52.4 bits (124), Expect = 8e-08, Method: Composition-based stats.
Identities = 39/132 (29%), Positives = 62/132 (46%), Gaps = 12/132 (9%)
Query: 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIW 64
G N ++++LG AGK++++ + GQ + +TI F+ V VKF +W
Sbjct: 317 GLSNKEMRILMLGLDAAGKTTILYKLKLGQSV----TTIPTVGFN-VETVTYKNVKFNVW 371
Query: 65 DTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNP----NMVMAL 120
D GQ++ L YY G I V D ++ + A+ QEL N + ++ +
Sbjct: 372 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR---QELHRIINDREMRDAIILI 428
Query: 121 AGNKADLLDARK 132
NK DL DA K
Sbjct: 429 FANKQDLPDAMK 440
>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp
pdb|3N5C|B Chain B, Crystal Structure Of Arf6delta13 Complexed With Gdp
Length = 162
Score = 52.0 bits (123), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 60/125 (48%), Gaps = 12/125 (9%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
++++LG AGK++++ + GQ + +TI F+ V VKF +WD GQ++
Sbjct: 2 RILMLGLDAAGKTTILYKLKLGQSV----TTIPTVGFN-VETVTYKNVKFNVWDVGGQDK 56
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNP----NMVMALAGNKADL 127
L YY G I V D ++ + A+ QEL N + ++ + NK DL
Sbjct: 57 IRPLWRHYYTGTQGLIFVVDCADRDRIDEAR---QELHRIINDREMRDAIILIFANKQDL 113
Query: 128 LDARK 132
DA K
Sbjct: 114 PDAMK 118
>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex
pdb|4FME|F Chain F, Espg-Rab1-Arf6 Complex
Length = 160
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 60/125 (48%), Gaps = 12/125 (9%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
++++LG AGK++++ + GQ + +TI F+ V VKF +WD GQ++
Sbjct: 2 RILMLGLDAAGKTTILYKLKLGQSV----TTIPTVGFN-VETVTYKNVKFNVWDVGGQDK 56
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNP----NMVMALAGNKADL 127
L YY G I V D ++ + A+ QEL N + ++ + NK DL
Sbjct: 57 IRPLWRHYYTGTQGLIFVVDCADRDRIDEAR---QELHRIINDREMRDAIILIFANKQDL 113
Query: 128 LDARK 132
DA K
Sbjct: 114 PDAMK 118
>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q72|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7Q|A Chain A, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
pdb|3Q7Q|B Chain B, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
Length = 166
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 66/126 (52%), Gaps = 3/126 (2%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K++LLG G GKS+L F G + E+ + +++ V+ ++D Q+
Sbjct: 4 KVLLLGAPGVGKSALARIF--GGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDG 61
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKW-VQELQAQGNPNMVMALAGNKADLLDA 130
L A +IVY +T++ SFE+A + VQ +A+ ++ + L GNK+DL+ +
Sbjct: 62 GRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRS 121
Query: 131 RKVTAE 136
R+V+ +
Sbjct: 122 REVSVD 127
>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase
pdb|2DPX|B Chain B, Crystal Structure Of Human Rad Gtpase
Length = 174
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 66/126 (52%), Gaps = 3/126 (2%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K++LLG G GKS+L F G + E+ + +++ V+ ++D Q+
Sbjct: 9 KVLLLGAPGVGKSALARIF--GGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDG 66
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKW-VQELQAQGNPNMVMALAGNKADLLDA 130
L A +IVY +T++ SFE+A + VQ +A+ ++ + L GNK+DL+ +
Sbjct: 67 GRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRS 126
Query: 131 RKVTAE 136
R+V+ +
Sbjct: 127 REVSVD 132
>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp
pdb|2GJS|B Chain B, The Crystal Structure Of Human Rrad In Complex With Gdp
Length = 176
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 66/126 (52%), Gaps = 3/126 (2%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K++LLG G GKS+L F G + E+ + +++ V+ ++D Q+
Sbjct: 9 KVLLLGAPGVGKSALARIF--GGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDG 66
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKW-VQELQAQGNPNMVMALAGNKADLLDA 130
L A +IVY +T++ SFE+A + VQ +A+ ++ + L GNK+DL+ +
Sbjct: 67 GRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRS 126
Query: 131 RKVTAE 136
R+V+ +
Sbjct: 127 REVSVD 132
>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein,
Gdp- Bound
Length = 181
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 63/127 (49%), Gaps = 8/127 (6%)
Query: 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIW 64
GNK + +++++G GAGK++++ + G+ I +TI F+ V + F +W
Sbjct: 14 GNKEM--RILMVGLDGAGKTTVLYKLKLGEVI----TTIPTIGFN-VETVQYKNISFTVW 66
Query: 65 DTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGN-PNMVMALAGN 123
D GQ+R SL YYR I V D +++ A++ +Q + + N + N
Sbjct: 67 DVGGQDRIRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNAAWLVFAN 126
Query: 124 KADLLDA 130
K DL +A
Sbjct: 127 KQDLPEA 133
>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex
Length = 162
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 59/125 (47%), Gaps = 12/125 (9%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
+++ LG AGK++++ + GQ + +TI F+ V VKF +WD GQ++
Sbjct: 2 RILXLGLDAAGKTTILYKLKLGQSV----TTIPTVGFN-VETVTYKNVKFNVWDVGGQDK 56
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNP----NMVMALAGNKADL 127
L YY G I V D ++ + A+ QEL N + ++ + NK DL
Sbjct: 57 IRPLWRHYYTGTQGLIFVVDCADRDRIDEAR---QELHRIINDREXRDAIILIFANKQDL 113
Query: 128 LDARK 132
DA K
Sbjct: 114 PDAXK 118
>pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l)
Length = 175
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 63/132 (47%), Gaps = 14/132 (10%)
Query: 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIW 64
GNK + ++++LG AGK++++ + GQ + +TI F+ V VKF +W
Sbjct: 10 GNKEM--RILMLGLDAAGKTTILYKLKLGQSV----TTIPTVGFN-VETVTYKNVKFNVW 62
Query: 65 DTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNP----NMVMAL 120
D G ++ L YY G I V D ++ + A+ QEL N + ++ +
Sbjct: 63 DVGGLDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR---QELHRIINDREMRDAIILI 119
Query: 121 AGNKADLLDARK 132
NK DL DA K
Sbjct: 120 FANKQDLPDAMK 131
>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
pdb|3TJZ|D Chain D, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
Length = 164
Score = 49.7 bits (117), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 59/120 (49%), Gaps = 6/120 (5%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
+++++G GAGK++++ + G+ I +TI F+ V + F +WD GQ+R
Sbjct: 2 RILMVGLDGAGKTTVLYKLKLGEVI----TTIPTIGFN-VETVQYKNISFTVWDVGGQDR 56
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGN-PNMVMALAGNKADLLDA 130
SL YYR I V D +++ A++ +Q + + N + NK DL +A
Sbjct: 57 IRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNAAWLVFANKQDLPEA 116
>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|B Chain B, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|C Chain C, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|D Chain D, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
Length = 199
Score = 49.7 bits (117), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 56/106 (52%), Gaps = 3/106 (2%)
Query: 23 KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
KSSLVLRFVKG F + TI + Q ++ + + +I DT G ++ ++ +
Sbjct: 21 KSSLVLRFVKGTFRDTYIPTIEDT-YRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISK 79
Query: 83 AAAAIIVYDITNQASFERAKKWVQEL-QAQGN-PNMVMALAGNKAD 126
A I+V+ +T++ S E + + Q +G+ ++ + L GNK D
Sbjct: 80 GHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCD 125
>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound
Conformation
Length = 181
Score = 49.7 bits (117), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 62/127 (48%), Gaps = 8/127 (6%)
Query: 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIW 64
GNK + +++++G GAGK++++ + G+ I +TI F+ V + F +W
Sbjct: 14 GNKEM--RILMVGLDGAGKTTVLYKLKLGEVI----TTIPTIGFNVE-CVQYCNISFTVW 66
Query: 65 DTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGN-PNMVMALAGN 123
D GQ+R SL YY I V D +++ A++ +Q + + N + N
Sbjct: 67 DVGGQDRIRSLWRHYYCNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELCNAAWLVFAN 126
Query: 124 KADLLDA 130
K DL +A
Sbjct: 127 KQDLPEA 133
>pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|C Chain C, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|E Chain E, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|G Chain G, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
Length = 172
Score = 49.3 bits (116), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 60/128 (46%), Gaps = 12/128 (9%)
Query: 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAG 68
+ ++++LG AGK++++ + GQ + +TI F+ V VKF +WD G
Sbjct: 1 MEMRILMLGLDAAGKTTILYKLKLGQSV----TTIPTVGFN-VETVTYKNVKFNVWDVGG 55
Query: 69 QERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNP----NMVMALAGNK 124
++ L YY G I V D ++ + A+ QEL N + ++ + NK
Sbjct: 56 LDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR---QELHRIINDREMRDAIILIFANK 112
Query: 125 ADLLDARK 132
DL DA K
Sbjct: 113 QDLPDAMK 120
>pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|B Chain B, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|E Chain E, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
Length = 165
Score = 49.3 bits (116), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 60/128 (46%), Gaps = 12/128 (9%)
Query: 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAG 68
+ ++++LG AGK++++ + GQ + +TI F+ V VKF +WD G
Sbjct: 2 MEMRILMLGLDAAGKTTILYKLKLGQSV----TTIPTVGFN-VETVTYKNVKFNVWDVGG 56
Query: 69 QERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNP----NMVMALAGNK 124
++ L YY G I V D ++ + A+ QEL N + ++ + NK
Sbjct: 57 LDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR---QELHRIINDREMRDAIILIFANK 113
Query: 125 ADLLDARK 132
DL DA K
Sbjct: 114 QDLPDAMK 121
>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp
Length = 195
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 69/140 (49%), Gaps = 14/140 (10%)
Query: 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVK---F 61
G K+ K++L+G+ G GKS+L F Q E + + + V+ V +
Sbjct: 18 GQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVY 77
Query: 62 EIW---DTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNP--NM 116
+IW D G R H L A +IV+ +T++ SF + + + L+A G P ++
Sbjct: 78 DIWEQGDAGGWLRDHCLQT-----GDAFLIVFSVTDRRSFSKVPETLLRLRA-GRPHHDL 131
Query: 117 VMALAGNKADLLDARKVTAE 136
+ L GNK+DL +R+V+ E
Sbjct: 132 PVILVGNKSDLARSREVSLE 151
>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
pdb|1MOZ|B Chain B, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
Length = 183
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 66/136 (48%), Gaps = 9/136 (6%)
Query: 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTA 67
N ++++LG GAGK++++ R G+ + + TIG F +TL+ + +K +WD
Sbjct: 16 NKELRILILGLDGAGKTTILYRLQIGEVVT-TKPTIG--FNVETLSYKN--LKLNVWDLG 70
Query: 68 GQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKK----WVQELQAQGNPNMVMALAGN 123
GQ YY AA I V D T++ A K +QE + Q +V A +
Sbjct: 71 GQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQD 130
Query: 124 KADLLDARKVTAEASI 139
+ L A +V+ E ++
Sbjct: 131 QPGALSASEVSKELNL 146
>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
pdb|4AII|B Chain B, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
Length = 180
Score = 46.2 bits (108), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 66/133 (49%), Gaps = 14/133 (10%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVK---FEIW---D 65
K++LLG+ G GKS+L F Q E + + + V+ V ++IW D
Sbjct: 14 KVMLLGESGVGKSTLAGTFGGLQGDNAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGD 73
Query: 66 TAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNP--NMVMALAGN 123
G + H L A +IV+ +T++ SF + + + L+A G P ++ + L GN
Sbjct: 74 AGGWLQDHCLQT-----GDAFLIVFSVTDRRSFSKVPETLLRLRA-GRPHHDLPVILVGN 127
Query: 124 KADLLDARKVTAE 136
K+DL +R+V+ E
Sbjct: 128 KSDLARSREVSLE 140
>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
pdb|3Q85|B Chain B, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
Length = 169
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 66/133 (49%), Gaps = 14/133 (10%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVK---FEIW---D 65
K++L+G+ G GKS+L F Q E + + + V+ V ++IW D
Sbjct: 4 KVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGD 63
Query: 66 TAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNP--NMVMALAGN 123
G + H L A +IV+ +T++ SF + + + L+A G P ++ + L GN
Sbjct: 64 AGGWLQDHCLQT-----GDAFLIVFSVTDRRSFSKVPETLLRLRA-GRPHHDLPVILVGN 117
Query: 124 KADLLDARKVTAE 136
K+DL +R+V+ E
Sbjct: 118 KSDLARSREVSLE 130
>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
pdb|3RD1|B Chain B, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
Length = 178
Score = 43.1 bits (100), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 59/127 (46%), Gaps = 12/127 (9%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
+++++G AGK+S++ + G+ + +TI F+ V + F +WD GQ++
Sbjct: 19 RILMVGLDAAGKTSILYKLKLGEIV----TTIPTIGFNVE-TVEYKNISFTVWDVGGQDK 73
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNP----NMVMALAGNKADL 127
L YY+ A I V D ++ A+ +EL N N ++ + NK DL
Sbjct: 74 IRPLWRHYYQNTQAIIFVVDSNDRDRIGEAR---EELMKMLNEDEMRNAILLVFANKHDL 130
Query: 128 LDARKVT 134
A ++
Sbjct: 131 PQAMSIS 137
>pdb|3C5C|A Chain A, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|B Chain B, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|C Chain C, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|D Chain D, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
Length = 187
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 65/129 (50%), Gaps = 5/129 (3%)
Query: 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAG 68
+ L +LG GAGKS+L ++F+ +FI + + + S+ V+ V + DTA
Sbjct: 20 LEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEE-TVDHQPVHLRVMDTAD 78
Query: 69 QERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQ--ELQAQGNPNMVMA-LAGNKA 125
+ + Y A A ++VY + ++ SF+ + +++ L A+ + A L GNK
Sbjct: 79 LDTPRN-CERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKL 137
Query: 126 DLLDARKVT 134
D+ R+VT
Sbjct: 138 DMAQYRQVT 146
>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4
pdb|1Z6X|B Chain B, Structure Of Human Adp-Ribosylation Factor 4
Length = 180
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 60/127 (47%), Gaps = 12/127 (9%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
+++++G AGK++++ + G+ + +TI F+ V + F +WD GQ+R
Sbjct: 19 RILMVGLDAAGKTTILYKLKLGEIV----TTIPTIGFNVE-TVEYKNICFTVWDVGGQDR 73
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQ----AQGNPNMVMALAGNKADL 127
L Y++ I V D ++ ER ++ ELQ + V+ L NK DL
Sbjct: 74 IRPLWKHYFQNTQGLIFVVDSNDR---ERIQEVADELQKMLLVDELRDAVLLLFANKQDL 130
Query: 128 LDARKVT 134
+A ++
Sbjct: 131 PNAMAIS 137
>pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|B Chain B, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|C Chain C, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|D Chain D, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
Length = 165
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 55/117 (47%), Gaps = 6/117 (5%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
++++LG GAGK++++ R G+ + +TI F+ V +KF++WD GQ
Sbjct: 4 RILILGLDGAGKTTILYRLQVGEVV----TTIPTIGFN-VETVTYKNLKFQVWDLGGQTS 58
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADL 127
YY A I V D ++ +K + V L+ + ++ + NK D+
Sbjct: 59 IRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDM 115
>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With
Brefeldin A
pdb|1R8S|A Chain A, Arf1[delta1-17]-Gdp In Complex With A Sec7 Domain Carrying
The Mutation Of The Catalytic Glutamate To Lysine
pdb|1S9D|A Chain A, Arf1[delta 1-17]-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1U81|A Chain A, Delta-17 Human Adp Ribosylation Factor 1 Complexed With
Gdp
Length = 164
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 58/120 (48%), Gaps = 6/120 (5%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
+++++G AGK++++ + G+ + +TI F+ V + F +WD GQ++
Sbjct: 2 RILMVGLDAAGKTTILYKLKLGEIV----TTIPTIGFN-VETVEYKNISFTVWDVGGQDK 56
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGN-PNMVMALAGNKADLLDA 130
L Y++ I V D ++ A++ + + A+ + V+ + NK DL +A
Sbjct: 57 IRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA 116
>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
pdb|1HUR|B Chain B, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
Length = 180
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 58/120 (48%), Gaps = 6/120 (5%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
+++++G AGK++++ + G+ + +TI F+ V + F +WD GQ++
Sbjct: 18 RILMVGLDAAGKTTILYKLKLGEIV----TTIPTIGFN-VETVEYKNISFTVWDVGGQDK 72
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGN-PNMVMALAGNKADLLDA 130
L Y++ I V D ++ A++ + + A+ + V+ + NK DL +A
Sbjct: 73 IRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA 132
>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1RRG|B Chain B, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1R8Q|A Chain A, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1R8Q|B Chain B, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1RRF|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Monomeric Crystal Form
Length = 181
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 58/120 (48%), Gaps = 6/120 (5%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
+++++G AGK++++ + G+ + +TI F+ V + F +WD GQ++
Sbjct: 19 RILMVGLDAAGKTTILYKLKLGEIV----TTIPTIGFNVE-TVEYKNISFTVWDVGGQDK 73
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGN-PNMVMALAGNKADLLDA 130
L Y++ I V D ++ A++ + + A+ + V+ + NK DL +A
Sbjct: 74 IRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA 133
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
pdb|3O47|B Chain B, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
Length = 329
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 58/120 (48%), Gaps = 6/120 (5%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
+++++G AGK++++ + G+ + +TI F+ V + F +WD GQ++
Sbjct: 167 RILMVGLDAAGKTTILYKLKLGEIV----TTIPTIGFN-VETVEYKNISFTVWDVGGQDK 221
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGN-PNMVMALAGNKADLLDA 130
L Y++ I V D ++ A++ + + A+ + V+ + NK DL +A
Sbjct: 222 IRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA 281
>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5
Length = 192
Score = 40.0 bits (92), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/124 (22%), Positives = 60/124 (48%), Gaps = 6/124 (4%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
+++++G AGK++++ + G+ + +TI F+ V + F +WD GQ++
Sbjct: 31 RILMVGLDAAGKTTILYKLKLGEIV----TTIPTIGFN-VETVEYKNICFTVWDVGGQDK 85
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQE-LQAQGNPNMVMALAGNKADLLDA 130
L Y++ I V D ++ + + +Q+ LQ + V+ + NK D+ +A
Sbjct: 86 IRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNA 145
Query: 131 RKVT 134
V+
Sbjct: 146 MPVS 149
>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum
Adp-Ribosylation Factor 1
Length = 181
Score = 39.3 bits (90), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 58/125 (46%), Gaps = 12/125 (9%)
Query: 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQ 69
+ +++++G AGK++++ + G+ + +TI F+ V + F +WD GQ
Sbjct: 17 DVRILMVGLDAAGKTTILYKVKLGEVV----TTIPTIGFNVE-TVEFRNISFTVWDVGGQ 71
Query: 70 ERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGN----PNMVMALAGNKA 125
++ L YY I V D ++ + A+ +EL N + ++ + NK
Sbjct: 72 DKIRPLWRHYYSNTDGLIFVVDSNDRERIDDAR---EELHRMINEEELKDAIILVFANKQ 128
Query: 126 DLLDA 130
DL +A
Sbjct: 129 DLPNA 133
>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5
Length = 187
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 62/128 (48%), Gaps = 7/128 (5%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K++++G AGK++++ +F + + TIG+ + + +N+ +F +WD GQE
Sbjct: 18 KVIIVGLDNAGKTTILYQFSMNEVVH-TSPTIGSNV--EEIVINNT--RFLMWDIGGQES 72
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMV-MALAGNKADLLDA 130
S YY I+V D T++ ++ + ++ A + + + NK D+ +
Sbjct: 73 LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC 132
Query: 131 RKVTAEAS 138
V AE S
Sbjct: 133 MTV-AEIS 139
>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5
pdb|1Z6Y|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5
Length = 179
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 62/128 (48%), Gaps = 7/128 (5%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K++++G AGK++++ +F + + TIG+ + + +N+ +F +WD GQE
Sbjct: 18 KVIIVGLDNAGKTTILYQFSMNEVVH-TSPTIGSNV--EEIVINNT--RFLMWDIGGQES 72
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMV-MALAGNKADLLDA 130
S YY I+V D T++ ++ + ++ A + + + NK D+ +
Sbjct: 73 LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC 132
Query: 131 RKVTAEAS 138
V AE S
Sbjct: 133 MTV-AEIS 139
>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
(Casp Target)
Length = 181
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 62/128 (48%), Gaps = 7/128 (5%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K++++G AGK++++ +F + + TIG+ + + +N+ +F +WD GQE
Sbjct: 23 KVIIVGLDNAGKTTILYQFSMNEVVH-TSPTIGSNV--EEIVINNT--RFLMWDIGGQES 77
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMV-MALAGNKADLLDA 130
S YY I+V D T++ ++ + ++ A + + + NK D+ +
Sbjct: 78 LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC 137
Query: 131 RKVTAEAS 138
V AE S
Sbjct: 138 MTV-AEIS 144
>pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|C Chain C, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|D Chain D, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
Length = 183
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 44/84 (52%), Gaps = 5/84 (5%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K++++G AGK++++ +F + + TIG+ + + +N+ +F +WD GQE
Sbjct: 24 KVIIVGLDNAGKTTILYQFSMNEVVH-TSPTIGSNV--EEIVINNT--RFLMWDIGGQES 78
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQ 95
S YY I+V D T++
Sbjct: 79 LRSSWNTYYTNTEFVIVVVDSTDR 102
>pdb|2BMJ|A Chain A, Gtpase Like Domain Of Centaurin Gamma 1 (Human)
Length = 178
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 59/120 (49%), Gaps = 18/120 (15%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKG--QFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQ 69
+L +LGD +GKSSL+ RF+ G Q +E ES + + + V+ T I + AG
Sbjct: 9 RLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQ----YKKEMLVDGQTHLVLIREEAG- 63
Query: 70 ERYHSLAP-MYYRG-AAAAIIVYDITNQASFE---RAKKWVQELQAQGNPNMVMALAGNK 124
AP + G A A I V+ + ++ SF+ R + L+ +G + +AL G +
Sbjct: 64 ------APDAKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQ 117
>pdb|4DCN|A Chain A, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
Complex With Arl1
pdb|4DCN|B Chain B, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
Complex With Arl1
Length = 166
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 54/117 (46%), Gaps = 6/117 (5%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
++++LG GAGK++++ R G+ + +TI F+ V +KF++WD G
Sbjct: 6 RILILGLDGAGKTTILYRLQVGEVV----TTIPTIGFNVE-TVTYKNLKFQVWDLGGLTS 60
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADL 127
YY A I V D ++ +K + V L+ + ++ + NK D+
Sbjct: 61 IRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDM 117
>pdb|2IWR|A Chain A, Gtpase Like Domain Of Centaurin Gamma 1 (Human)
Length = 178
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 59/120 (49%), Gaps = 18/120 (15%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKG--QFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQ 69
+L +LGD +GKSSL+ RF+ G Q +E ES + + + V+ T I + AG
Sbjct: 9 RLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQ----YKKEMLVDGQTHLVLIREEAG- 63
Query: 70 ERYHSLAP-MYYRG-AAAAIIVYDITNQASFE---RAKKWVQELQAQGNPNMVMALAGNK 124
AP + G A A I V+ + ++ SF+ R + L+ +G + +AL G +
Sbjct: 64 ------APDAKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQ 117
>pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In Complex
With Arf1 Gtp Form
pdb|1O3Y|A Chain A, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|1O3Y|B Chain B, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|2J59|A Chain A, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|B Chain B, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|C Chain C, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|D Chain D, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|E Chain E, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|F Chain F, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
Length = 166
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/120 (21%), Positives = 57/120 (47%), Gaps = 6/120 (5%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
+++++G AGK++++ + G+ + +TI F+ V + F +WD G ++
Sbjct: 4 RILMVGLDAAGKTTILYKLKLGEIV----TTIPTIGFNVE-TVEYKNISFTVWDVGGLDK 58
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGN-PNMVMALAGNKADLLDA 130
L Y++ I V D ++ A++ + + A+ + V+ + NK DL +A
Sbjct: 59 IRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA 118
>pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
pdb|3AQ4|B Chain B, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
Length = 184
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/120 (21%), Positives = 56/120 (46%), Gaps = 6/120 (5%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
+++++G AGK++++ + G+ + +TI F+ V + F +WD GQ++
Sbjct: 22 RILMVGLDAAGKTTILYKLKLGEIV----TTIPTIGFNVE-TVEYKNISFTVWDVGGQDK 76
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGN-PNMVMALAGNKADLLDA 130
L Y++ I V D ++ A+ + + + + V+ + NK DL +A
Sbjct: 77 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 136
>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1
pdb|3DOF|A Chain A, Complex Of Arl2 And Bart, Crystal Form 2
Length = 192
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 55/122 (45%), Gaps = 6/122 (4%)
Query: 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDT 66
K +L++LG AGK++++ +F G+ I+ T+G F +TL K IWD
Sbjct: 13 KERELRLLMLGLDNAGKTTILKKF-NGEDIDTISPTLG--FNIKTL--EHRGFKLNIWDV 67
Query: 67 AGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGN-PNMVMALAGNKA 125
GQ+ S Y+ I V D ++ + ++ +Q L + + + NK
Sbjct: 68 GGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQ 127
Query: 126 DL 127
DL
Sbjct: 128 DL 129
>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native)
Length = 186
Score = 36.6 bits (83), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 55/122 (45%), Gaps = 6/122 (4%)
Query: 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDT 66
K +L++LG AGK++++ +F G+ ++ T+G F +TL K IWD
Sbjct: 15 KERELRLLMLGLDNAGKTTILKKF-NGEDVDTISPTLG--FNIKTL--EHRGFKLNIWDV 69
Query: 67 AGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGN-PNMVMALAGNKA 125
GQ+ S Y+ I V D ++ + ++ +Q L + + + NK
Sbjct: 70 GGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQ 129
Query: 126 DL 127
DL
Sbjct: 130 DL 131
>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1
Length = 186
Score = 36.6 bits (83), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 55/122 (45%), Gaps = 6/122 (4%)
Query: 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDT 66
K +L++LG AGK++++ +F G+ ++ T+G F +TL K IWD
Sbjct: 15 KERELRLLMLGLDNAGKTTILKKF-NGEDVDTISPTLG--FNIKTL--EHRGFKLNIWDV 69
Query: 67 AGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGN-PNMVMALAGNKA 125
GQ+ S Y+ I V D ++ + ++ +Q L + + + NK
Sbjct: 70 GGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQ 129
Query: 126 DL 127
DL
Sbjct: 130 DL 131
>pdb|1UPT|A Chain A, Structure Of A Complex Of The Golgin-245 Grip Domain
With Arl1
pdb|1UPT|C Chain C, Structure Of A Complex Of The Golgin-245 Grip Domain
With Arl1
pdb|1UPT|E Chain E, Structure Of A Complex Of The Golgin-245 Grip Domain
With Arl1
pdb|1UPT|G Chain G, Structure Of A Complex Of The Golgin-245 Grip Domain
With Arl1
Length = 171
Score = 36.2 bits (82), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 5/84 (5%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
++++LG GAGK++++ R G+ + +TI F+ V +KF++WD G
Sbjct: 9 RILILGLDGAGKTTILYRLQVGEVV----TTIPTIGFN-VETVTYKNLKFQVWDLGGLTS 63
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQ 95
YY A I V D ++
Sbjct: 64 IRPYWRCYYSNTDAVIYVVDSCDR 87
>pdb|2H57|A Chain A, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|B Chain B, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|C Chain C, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
Length = 190
Score = 35.8 bits (81), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Query: 57 ATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGN--- 113
+++ F ++D +GQ RY +L YY+ A I V D +++ AK+ + L +
Sbjct: 65 SSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKH 124
Query: 114 PNMVMALAGNKADLLDA 130
+ + NK DL DA
Sbjct: 125 RRIPILFFANKMDLRDA 141
>pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8
Length = 179
Score = 35.4 bits (80), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 11/87 (12%)
Query: 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVK---FEIW 64
N K++++G AGK++++ +F+ + + TIG+ V + VK F +W
Sbjct: 14 NQEHKVIIVGLDNAGKTTILYQFLMNEVVH-TSPTIGSN-------VEEIVVKNTHFLMW 65
Query: 65 DTAGQERYHSLAPMYYRGAAAAIIVYD 91
D GQE S YY I+V D
Sbjct: 66 DIGGQESLRSSWNTYYSNTEFIILVVD 92
>pdb|3DPU|A Chain A, Roccor Domain Tandem Of Rab Family Protein (Roco)
pdb|3DPU|B Chain B, Roccor Domain Tandem Of Rab Family Protein (Roco)
Length = 535
Score = 33.1 bits (74), Expect = 0.046, Method: Composition-based stats.
Identities = 29/123 (23%), Positives = 55/123 (44%), Gaps = 12/123 (9%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLA-----VNDATVK---FEI 63
K+ L+GD AGK+SL+ + + F + T G ++ ND +K F
Sbjct: 43 KVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHF 102
Query: 64 WDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGN 123
WD GQE H+ + ++ +++ D ++ W++ ++ G + V+ + N
Sbjct: 103 WDFGGQEIMHASHQFFMTRSSVYMLLLDSRTDSN---KHYWLRHIEKYGGKSPVIVVM-N 158
Query: 124 KAD 126
K D
Sbjct: 159 KID 161
>pdb|2X77|A Chain A, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1.
pdb|2X77|B Chain B, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1
Length = 189
Score = 33.1 bits (74), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 54/123 (43%), Gaps = 12/123 (9%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
++++LG AGK+S++ R G + + +TL + + FE+WD GQ
Sbjct: 24 RVLMLGLDNAGKTSILYRLHLG---DVVTTVPTVGVNLETLQYKN--ISFEVWDLGGQTG 78
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPN----MVMALAGNKADL 127
Y+ A I V D T++ AK EL A + + ++ + NK DL
Sbjct: 79 VRPYWRCYFSDTDAVIYVVDSTDRDRMGVAK---HELYALLDEDELRKSLLLIFANKQDL 135
Query: 128 LDA 130
DA
Sbjct: 136 PDA 138
>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp
Length = 181
Score = 32.7 bits (73), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 51/120 (42%), Gaps = 6/120 (5%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
+++LLG AGK++L L+ + + I T G S V K +WD GQ +
Sbjct: 18 RILLLGLDNAGKTTL-LKQLASEDISHITPTQGFNIKS----VQSQGFKLNVWDIGGQRK 72
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALA-GNKADLLDA 130
Y+ I V D ++ FE + + EL + + V L NK DLL A
Sbjct: 73 IRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTA 132
>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
pdb|4GOJ|B Chain B, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
Length = 189
Score = 32.7 bits (73), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 51/120 (42%), Gaps = 6/120 (5%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
+++LLG AGK++L L+ + + I T G S V K +WD GQ +
Sbjct: 19 RILLLGLDNAGKTTL-LKQLASEDISHITPTQGFNIKS----VQSQGFKLNVWDIGGQRK 73
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALA-GNKADLLDA 130
Y+ I V D ++ FE + + EL + + V L NK DLL A
Sbjct: 74 IRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTA 133
>pdb|3LLU|A Chain A, Crystal Structure Of The Nucleotide-Binding Domain Of Ras-
Related Gtp-Binding Protein C
Length = 196
Score = 32.3 bits (72), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 66/150 (44%), Gaps = 16/150 (10%)
Query: 3 TTGNKNI-----NAKLVLLGDVGAGKSSL---VLRFVKGQFIEFQESTIGAAFFSQTLAV 54
++G +N+ +++L+G +GKSS+ V + F EST + ++
Sbjct: 8 SSGRENLYFQGSKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLEST--NKIYKDDIS- 64
Query: 55 NDATVKFEIWDTAGQERYHSLA---PMYYRGAAAAIIVYDITNQASFERAKKWVQELQA- 110
N + V F+IWD GQ + M +RG A I V D + + + +A
Sbjct: 65 NSSFVNFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAY 124
Query: 111 QGNPNMVMALAGNKAD-LLDARKVTAEASI 139
+ NP+M + +K D L D K+ + I
Sbjct: 125 KVNPDMNFEVFIHKVDGLSDDHKIETQRDI 154
>pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To
Gdp-Alf4
Length = 164
Score = 32.3 bits (72), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 51/120 (42%), Gaps = 6/120 (5%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
+++LLG AGK++L L+ + + I T G S V K +WD GQ +
Sbjct: 6 RILLLGLDNAGKTTL-LKQLASEDISHITPTQGFNIKS----VQSQGFKLNVWDIGGQRK 60
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALA-GNKADLLDA 130
Y+ I V D ++ FE + + EL + + V L NK DLL A
Sbjct: 61 IRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTA 120
>pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet)
Length = 186
Score = 31.2 bits (69), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 48/108 (44%), Gaps = 6/108 (5%)
Query: 21 AGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYY 80
AGK++++ +F G+ ++ T+G F +TL K IWD GQ+ S Y+
Sbjct: 29 AGKTTILKKF-NGEDVDTISPTLG--FNIKTL--EHRGFKLNIWDVGGQKSLRSYWRNYF 83
Query: 81 RGAAAAIIVYDITNQASFERAKKWVQELQAQGN-PNMVMALAGNKADL 127
I V D ++ + ++ +Q L + + + NK DL
Sbjct: 84 ESTDGLIWVVDSADRQRXQDCQRELQSLLVEERLAGATLLIFANKQDL 131
>pdb|1AVB|A Chain A, Arcelin-1 From Phaseolus Vulgaris L
pdb|1AVB|B Chain B, Arcelin-1 From Phaseolus Vulgaris L
Length = 226
Score = 30.4 bits (67), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 5/48 (10%)
Query: 13 LVLLGDVG-AGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATV 59
L+L GD + + L+L VKG +E ++G AF+S + +ND T+
Sbjct: 16 LILQGDATVSSEGHLLLTNVKGN----EEDSMGRAFYSAPIQINDRTI 59
>pdb|3OLH|A Chain A, Human 3-Mercaptopyruvate Sulfurtransferase
Length = 302
Score = 30.0 bits (66), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 7/71 (9%)
Query: 37 EFQESTI-GAAFFSQTLAVNDATVKFEIWDT--AGQERYHSLAPMYYRGAAAAIIVYDIT 93
EF+E I GAAFF ++ + + +D G E + A GAA +++YD +
Sbjct: 61 EFEERHIPGAAFFD----IDQCSDRTSPYDHMLPGAEHFAEYAGRLGVGAATHVVIYDAS 116
Query: 94 NQASFERAKKW 104
+Q + + W
Sbjct: 117 DQGLYSAPRVW 127
>pdb|3BH6|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gppnhp
Length = 164
Score = 29.3 bits (64), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 50/120 (41%), Gaps = 6/120 (5%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
+++LLG AGK++L L+ + + I T G S V K +WD G +
Sbjct: 6 RILLLGLDNAGKTTL-LKQLASEDISHITPTQGFNIKS----VQSQGFKLNVWDIGGLRK 60
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALA-GNKADLLDA 130
Y+ I V D ++ FE + + EL + + V L NK DLL A
Sbjct: 61 IRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTA 120
>pdb|2Q3F|A Chain A, X-Ray Crystal Structure Of Putative Human Ras-Related
Gtp Binding D In Complex With Gmppnp
pdb|2Q3F|B Chain B, X-Ray Crystal Structure Of Putative Human Ras-Related
Gtp Binding D In Complex With Gmppnp
Length = 181
Score = 28.9 bits (63), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 17/93 (18%)
Query: 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTL-------AVNDATVKF 61
+ +++L G +GKSS+ Q + F + + F ++ N + V F
Sbjct: 3 VKPRILLXGLRRSGKSSI-------QKVVFHKXSPNETLFLESTNKICREDVSNSSFVNF 55
Query: 62 EIWDTAGQERYHSLAPMY---YRGAAAAIIVYD 91
+IWD GQ + Y +RG A I V D
Sbjct: 56 QIWDFPGQIDFFDPTFDYEXIFRGTGALIFVID 88
>pdb|4ARZ|A Chain A, The Crystal Structure Of Gtr1p-Gtr2p Complexed With
Gtp-Gdp
Length = 310
Score = 28.9 bits (63), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 12/71 (16%)
Query: 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKF------ 61
N KL+L+G G+GKSS+ + + F +GA T+ V + ++F
Sbjct: 4 NNRKKLLLMGRSGSGKSSMR-SIIFSNYSAFDTRRLGA-----TIDVEHSHLRFLGNMTL 57
Query: 62 EIWDTAGQERY 72
+WD GQ+ +
Sbjct: 58 NLWDCGGQDVF 68
>pdb|2FH5|B Chain B, The Structure Of The Mammalian Srp Receptor
pdb|2GO5|2 Chain 2, Structure Of Signal Recognition Particle Receptor (Sr) In
Complex With Signal Recognition Particle (Srp) And
Ribosome Nascent Chain Complex
Length = 214
Score = 28.5 bits (62), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 57/125 (45%), Gaps = 17/125 (13%)
Query: 13 LVLLGDVGAGKSSLVLRFVKGQFIEFQES-TIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
++ +G +GK+ L +R + GQ+ + Q S T +A + N+ + D G E
Sbjct: 10 VLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVN---NNRGNSLTLIDLPGHES 66
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQ---------GNPNMVMALAG 122
++ +A A++ + + A+F+R K V E Q +P++++A
Sbjct: 67 LRFQLLDRFKSSARAVVF--VVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIAC-- 122
Query: 123 NKADL 127
NK D+
Sbjct: 123 NKQDI 127
>pdb|4DRF|A Chain A, Crystal Structure Of Bacterial Pnkp-CHEN1-N Heterodimer
pdb|4DRF|C Chain C, Crystal Structure Of Bacterial Pnkp-CHEN1-N Heterodimer
pdb|4E6N|A Chain A, Crystal Structure Of Bacterial Pnkp-CHEN1-N Heterodimer
pdb|4E6N|C Chain C, Crystal Structure Of Bacterial Pnkp-CHEN1-N Heterodimer
Length = 427
Score = 28.1 bits (61), Expect = 1.5, Method: Composition-based stats.
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 88 IVYDITNQASFERAKKWVQELQAQGNPNMVM 118
I+ D+T+ S ++ KW ++L A G MV+
Sbjct: 300 ILVDVTDAESVDKGIKWWEDLTASGGEGMVV 330
>pdb|4GJ1|A Chain A, Crystal Structure Of
1-(5-Phosphoribosyl)-5-[(5-Phosphoribosylamino)
Methylideneamino] Imidazole-4-Carboxamide Isomerase
(Hisa)
Length = 243
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/122 (21%), Positives = 46/122 (37%), Gaps = 6/122 (4%)
Query: 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTA 67
+ K V++G ++L L +K EF I A T+ D V W A
Sbjct: 95 DCGVKRVVIGSXAIKDATLCLEILK----EFGSEAIVLAL--DTILKEDYVVAVNAWQEA 148
Query: 68 GQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADL 127
++ + Y I+ DI+ + + + +L + PN+ + +G A L
Sbjct: 149 SDKKLXEVLDFYSNKGLKHILCTDISKDGTXQGVNVRLYKLIHEIFPNICIQASGGVASL 208
Query: 128 LD 129
D
Sbjct: 209 KD 210
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 26.9 bits (58), Expect = 3.2, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 17/36 (47%)
Query: 49 SQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAA 84
S LA D + IW+ + E H AP+ GAA
Sbjct: 1145 STLLATGDDNGEIRIWNVSNGELLHLCAPLSEEGAA 1180
>pdb|3TY5|A Chain A, Crystal Structure Of C. Thermocellum Pnkp Ligase Domain In
Complex With Atp
pdb|3TY5|B Chain B, Crystal Structure Of C. Thermocellum Pnkp Ligase Domain In
Complex With Atp
Length = 413
Score = 26.9 bits (58), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 88 IVYDITNQASFERAKKWVQELQAQGNPNMVM 118
I+ D+T+ S ++ KW ++L A G MV+
Sbjct: 286 ILVDVTDAESVDKGIKWWEDLTASGGEGMVV 316
>pdb|3TY8|A Chain A, Crystal Structure Of C. Thermocellum Pnkp Ligase Domain
Apo Form
pdb|3TY8|B Chain B, Crystal Structure Of C. Thermocellum Pnkp Ligase Domain
Apo Form
Length = 413
Score = 26.9 bits (58), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 88 IVYDITNQASFERAKKWVQELQAQGNPNMVM 118
I+ D+T+ S ++ KW ++L A G MV+
Sbjct: 286 ILVDVTDAESVDKGIKWWEDLTASGGEGMVV 316
>pdb|3TY9|A Chain A, Crystal Structure Of C. Thermocellum Pnkp Ligase Domain
Amp-Adenylate
pdb|3TY9|B Chain B, Crystal Structure Of C. Thermocellum Pnkp Ligase Domain
Amp-Adenylate
pdb|3TY9|C Chain C, Crystal Structure Of C. Thermocellum Pnkp Ligase Domain
Amp-Adenylate
pdb|3TY9|D Chain D, Crystal Structure Of C. Thermocellum Pnkp Ligase Domain
Amp-Adenylate
Length = 393
Score = 26.9 bits (58), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 88 IVYDITNQASFERAKKWVQELQAQGNPNMVM 118
I+ D+T+ S ++ KW ++L A G MV+
Sbjct: 266 ILVDVTDAESVDKGIKWWEDLTASGGEGMVV 296
>pdb|1LUL|A Chain A, Db58, A Legume Lectin From Dolichos Biflorus
pdb|1LUL|B Chain B, Db58, A Legume Lectin From Dolichos Biflorus
pdb|1LUL|C Chain C, Db58, A Legume Lectin From Dolichos Biflorus
pdb|1LUL|D Chain D, Db58, A Legume Lectin From Dolichos Biflorus
pdb|1LUL|E Chain E, Db58, A Legume Lectin From Dolichos Biflorus
pdb|1LUL|F Chain F, Db58, A Legume Lectin From Dolichos Biflorus
pdb|1G7Y|A Chain A, The Crystal Structure Of The 58kd Vegetative Lectin From
The Tropical Legume Dolichos Biflorus
pdb|1G7Y|B Chain B, The Crystal Structure Of The 58kd Vegetative Lectin From
The Tropical Legume Dolichos Biflorus
pdb|1G7Y|C Chain C, The Crystal Structure Of The 58kd Vegetative Lectin From
The Tropical Legume Dolichos Biflorus
pdb|1G7Y|D Chain D, The Crystal Structure Of The 58kd Vegetative Lectin From
The Tropical Legume Dolichos Biflorus
pdb|1G7Y|E Chain E, The Crystal Structure Of The 58kd Vegetative Lectin From
The Tropical Legume Dolichos Biflorus
pdb|1G7Y|F Chain F, The Crystal Structure Of The 58kd Vegetative Lectin From
The Tropical Legume Dolichos Biflorus
Length = 253
Score = 26.9 bits (58), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 7 KNINAK-LVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVND 56
KN N+ +L GD S L L VKG + S++G AF+S + + D
Sbjct: 9 KNFNSSSFILQGDATVSSSKLRLTKVKGNGLP-TLSSLGRAFYSSPIQIYD 58
>pdb|1XTY|A Chain A, Crystal Structure Of Sulfolobus Solfataricus Peptidyl-Trna
Hydrolase
pdb|1XTY|B Chain B, Crystal Structure Of Sulfolobus Solfataricus Peptidyl-Trna
Hydrolase
pdb|1XTY|C Chain C, Crystal Structure Of Sulfolobus Solfataricus Peptidyl-Trna
Hydrolase
pdb|1XTY|D Chain D, Crystal Structure Of Sulfolobus Solfataricus Peptidyl-Trna
Hydrolase
Length = 120
Score = 26.2 bits (56), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 84 AAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAE 136
AA +V I N + R K+W+ E QG P +++ + N D + +R AE
Sbjct: 26 AAVTLVVSIINSNNL-RWKEWLNEWLHQGQPKIIVKV--NSLDEIISRAKKAE 75
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.130 0.363
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,557,076
Number of Sequences: 62578
Number of extensions: 116167
Number of successful extensions: 968
Number of sequences better than 100.0: 359
Number of HSP's better than 100.0 without gapping: 336
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 391
Number of HSP's gapped (non-prelim): 360
length of query: 139
length of database: 14,973,337
effective HSP length: 89
effective length of query: 50
effective length of database: 9,403,895
effective search space: 470194750
effective search space used: 470194750
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 46 (22.3 bits)