Query 032487
Match_columns 139
No_of_seqs 114 out of 1370
Neff 10.4
Searched_HMMs 46136
Date Fri Mar 29 14:43:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032487.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032487hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0084 GTPase Rab1/YPT1, smal 100.0 3.8E-37 8.2E-42 196.1 13.6 133 6-138 5-137 (205)
2 KOG0094 GTPase Rab6/YPT6/Ryh1, 100.0 1E-35 2.2E-40 189.2 13.6 132 7-138 19-151 (221)
3 KOG0092 GTPase Rab5/YPT51 and 100.0 3E-34 6.6E-39 182.2 13.6 132 7-138 2-133 (200)
4 KOG0098 GTPase Rab2, small G p 100.0 1.1E-33 2.4E-38 178.7 13.3 131 8-138 4-134 (216)
5 KOG0078 GTP-binding protein SE 100.0 2.3E-33 5.1E-38 180.8 14.4 133 6-138 8-140 (207)
6 KOG0087 GTPase Rab11/YPT3, sma 100.0 8E-33 1.7E-37 178.0 13.1 134 5-138 9-142 (222)
7 cd04120 Rab12 Rab12 subfamily. 100.0 2.3E-32 4.9E-37 180.7 15.6 127 11-137 1-127 (202)
8 cd04121 Rab40 Rab40 subfamily. 100.0 1.9E-31 4.2E-36 174.7 16.0 130 8-138 4-133 (189)
9 KOG0086 GTPase Rab4, small G p 100.0 2.3E-32 4.9E-37 168.1 10.6 135 4-138 3-137 (214)
10 KOG0095 GTPase Rab30, small G 100.0 3.3E-32 7.2E-37 166.9 11.1 132 6-137 3-134 (213)
11 KOG0093 GTPase Rab3, small G p 100.0 7.7E-32 1.7E-36 164.6 12.5 131 8-138 19-149 (193)
12 KOG0394 Ras-related GTPase [Ge 100.0 3.3E-32 7.1E-37 171.8 11.1 132 7-138 6-143 (210)
13 KOG0080 GTPase Rab18, small G 100.0 1.4E-31 3.1E-36 165.6 12.3 133 7-139 8-141 (209)
14 cd04122 Rab14 Rab14 subfamily. 100.0 7.2E-31 1.6E-35 168.8 15.5 128 10-137 2-129 (166)
15 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 100.0 1.3E-30 2.9E-35 169.9 15.4 121 7-129 2-123 (182)
16 cd04133 Rop_like Rop subfamily 100.0 1.6E-30 3.4E-35 168.7 15.4 119 11-131 2-121 (176)
17 KOG0079 GTP-binding protein H- 100.0 1.5E-31 3.4E-36 163.5 9.9 129 9-138 7-135 (198)
18 cd04117 Rab15 Rab15 subfamily. 100.0 3.1E-30 6.8E-35 165.3 15.7 128 11-138 1-128 (161)
19 cd04131 Rnd Rnd subfamily. Th 100.0 2.8E-30 6.1E-35 167.9 15.4 118 10-129 1-119 (178)
20 cd01867 Rab8_Rab10_Rab13_like 100.0 3.1E-30 6.8E-35 166.0 15.4 129 9-137 2-130 (167)
21 cd01865 Rab3 Rab3 subfamily. 100.0 4.9E-30 1.1E-34 164.9 15.6 126 11-136 2-127 (165)
22 cd04102 RabL3 RabL3 (Rab-like3 100.0 3.5E-30 7.5E-35 170.1 15.1 127 11-137 1-151 (202)
23 PF00071 Ras: Ras family; Int 100.0 5.3E-30 1.2E-34 164.0 14.8 127 12-138 1-127 (162)
24 cd01864 Rab19 Rab19 subfamily. 100.0 1.2E-29 2.5E-34 163.0 15.5 128 9-136 2-129 (165)
25 cd04107 Rab32_Rab38 Rab38/Rab3 100.0 1.2E-29 2.6E-34 167.9 16.0 127 11-137 1-132 (201)
26 cd01875 RhoG RhoG subfamily. 100.0 1.2E-29 2.6E-34 166.7 15.7 120 9-130 2-122 (191)
27 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 100.0 1.3E-29 2.9E-34 162.8 15.3 128 10-137 2-129 (166)
28 cd04141 Rit_Rin_Ric Rit/Rin/Ri 100.0 1.3E-29 2.8E-34 164.1 14.6 128 10-138 2-130 (172)
29 cd04113 Rab4 Rab4 subfamily. 100.0 2.3E-29 5.1E-34 160.9 15.3 127 11-137 1-127 (161)
30 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 100.0 2.8E-29 6.1E-34 168.7 15.9 120 8-129 11-131 (232)
31 cd04119 RJL RJL (RabJ-Like) su 100.0 2.6E-29 5.7E-34 161.2 15.1 126 11-136 1-131 (168)
32 cd01868 Rab11_like Rab11-like. 100.0 3.5E-29 7.6E-34 160.7 15.6 128 10-137 3-130 (165)
33 cd01866 Rab2 Rab2 subfamily. 100.0 3.6E-29 7.8E-34 161.3 15.6 129 9-137 3-131 (168)
34 PLN03110 Rab GTPase; Provision 100.0 5.2E-29 1.1E-33 166.5 16.2 131 7-137 9-139 (216)
35 cd04127 Rab27A Rab27a subfamil 100.0 3.9E-29 8.5E-34 162.6 15.2 129 9-137 3-142 (180)
36 cd04125 RabA_like RabA-like su 100.0 5.5E-29 1.2E-33 163.1 15.8 127 11-137 1-127 (188)
37 cd01874 Cdc42 Cdc42 subfamily. 100.0 4.7E-29 1E-33 161.8 15.1 118 11-130 2-120 (175)
38 cd04116 Rab9 Rab9 subfamily. 100.0 8.1E-29 1.8E-33 159.7 16.0 129 7-136 2-134 (170)
39 cd04128 Spg1 Spg1p. Spg1p (se 100.0 7.2E-29 1.6E-33 161.9 15.4 118 11-129 1-118 (182)
40 cd04136 Rap_like Rap-like subf 100.0 4.5E-29 9.7E-34 159.7 14.2 126 10-136 1-127 (163)
41 cd04110 Rab35 Rab35 subfamily. 100.0 9.2E-29 2E-33 163.5 16.0 129 8-137 4-132 (199)
42 cd04108 Rab36_Rab34 Rab34/Rab3 100.0 1.1E-28 2.4E-33 159.4 15.7 121 12-132 2-123 (170)
43 cd04106 Rab23_lke Rab23-like s 100.0 9.6E-29 2.1E-33 158.1 15.1 126 11-137 1-128 (162)
44 cd04109 Rab28 Rab28 subfamily. 100.0 1.1E-28 2.4E-33 164.9 15.7 127 11-137 1-131 (215)
45 cd04115 Rab33B_Rab33A Rab33B/R 100.0 1.1E-28 2.4E-33 159.3 15.3 128 10-137 2-131 (170)
46 PTZ00369 Ras-like protein; Pro 100.0 1.1E-28 2.5E-33 161.8 15.2 128 8-136 3-131 (189)
47 PLN03071 GTP-binding nuclear p 100.0 1.7E-28 3.8E-33 164.2 16.3 122 7-129 10-131 (219)
48 cd01861 Rab6 Rab6 subfamily. 100.0 2.3E-28 5.1E-33 156.1 15.5 126 11-136 1-126 (161)
49 cd04112 Rab26 Rab26 subfamily. 100.0 1.6E-28 3.6E-33 161.3 14.9 126 11-136 1-127 (191)
50 cd04176 Rap2 Rap2 subgroup. T 100.0 1.9E-28 4.1E-33 157.0 14.6 125 10-135 1-126 (163)
51 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 100.0 1.6E-28 3.4E-33 164.2 14.6 119 10-130 1-120 (222)
52 cd01860 Rab5_related Rab5-rela 100.0 3.5E-28 7.6E-33 155.6 15.5 127 10-136 1-127 (163)
53 cd00877 Ran Ran (Ras-related n 100.0 4.7E-28 1E-32 155.9 16.1 118 11-129 1-118 (166)
54 cd04111 Rab39 Rab39 subfamily. 100.0 3E-28 6.4E-33 162.3 15.6 128 10-137 2-131 (211)
55 cd04175 Rap1 Rap1 subgroup. T 100.0 2.7E-28 5.9E-33 156.5 14.3 126 10-136 1-127 (164)
56 PLN00023 GTP-binding protein; 100.0 4E-28 8.6E-33 168.1 16.0 124 7-130 18-166 (334)
57 smart00175 RAB Rab subfamily o 100.0 4.8E-28 1E-32 155.0 15.3 126 11-136 1-126 (164)
58 PLN03108 Rab family protein; P 100.0 4.9E-28 1.1E-32 161.2 15.9 129 9-137 5-133 (210)
59 cd01871 Rac1_like Rac1-like su 100.0 4.6E-28 1E-32 157.0 15.0 118 11-130 2-120 (174)
60 cd04124 RabL2 RabL2 subfamily. 100.0 8E-28 1.7E-32 154.1 15.9 118 11-129 1-118 (161)
61 cd04144 Ras2 Ras2 subfamily. 100.0 2.4E-28 5.2E-33 160.4 13.4 125 12-137 1-128 (190)
62 cd04140 ARHI_like ARHI subfami 100.0 9.8E-28 2.1E-32 154.1 14.6 125 11-136 2-129 (165)
63 cd04143 Rhes_like Rhes_like su 100.0 6.3E-28 1.4E-32 163.9 14.2 126 11-137 1-135 (247)
64 cd04126 Rab20 Rab20 subfamily. 100.0 1.1E-27 2.4E-32 160.1 14.7 114 11-129 1-114 (220)
65 cd04145 M_R_Ras_like M-Ras/R-R 100.0 1.7E-27 3.6E-32 152.5 14.9 126 10-136 2-128 (164)
66 cd04101 RabL4 RabL4 (Rab-like4 100.0 2.1E-27 4.6E-32 152.2 15.2 124 11-135 1-127 (164)
67 KOG0091 GTPase Rab39, small G 100.0 5.5E-29 1.2E-33 154.6 7.4 130 9-138 7-139 (213)
68 cd01892 Miro2 Miro2 subfamily. 100.0 2E-27 4.4E-32 153.3 15.1 124 8-133 2-126 (169)
69 cd04123 Rab21 Rab21 subfamily. 100.0 3E-27 6.5E-32 150.9 15.7 126 11-136 1-126 (162)
70 cd04134 Rho3 Rho3 subfamily. 100.0 1.9E-27 4.2E-32 156.0 15.0 119 11-131 1-120 (189)
71 smart00173 RAS Ras subfamily o 100.0 1.3E-27 2.9E-32 153.1 14.0 125 11-136 1-126 (164)
72 cd04114 Rab30 Rab30 subfamily. 100.0 5E-27 1.1E-31 151.1 16.6 128 8-135 5-132 (169)
73 KOG0088 GTPase Rab21, small G 100.0 5.1E-29 1.1E-33 154.2 6.8 132 7-138 10-141 (218)
74 cd04142 RRP22 RRP22 subfamily. 100.0 1.9E-27 4.1E-32 157.0 14.8 126 11-136 1-137 (198)
75 cd04118 Rab24 Rab24 subfamily. 100.0 4.6E-27 9.9E-32 154.5 16.0 118 11-129 1-119 (193)
76 cd04132 Rho4_like Rho4-like su 100.0 3.3E-27 7.2E-32 154.4 14.8 118 11-130 1-120 (187)
77 cd04138 H_N_K_Ras_like H-Ras/N 100.0 4.3E-27 9.3E-32 150.1 14.6 119 10-129 1-120 (162)
78 cd01862 Rab7 Rab7 subfamily. 100.0 6.7E-27 1.5E-31 150.8 15.5 124 11-134 1-128 (172)
79 smart00176 RAN Ran (Ras-relate 100.0 4E-27 8.6E-32 155.5 14.5 113 16-129 1-113 (200)
80 cd04130 Wrch_1 Wrch-1 subfamil 100.0 8.3E-27 1.8E-31 150.9 15.1 117 11-129 1-118 (173)
81 smart00174 RHO Rho (Ras homolo 100.0 6.8E-27 1.5E-31 151.2 14.3 116 13-130 1-117 (174)
82 cd00154 Rab Rab family. Rab G 100.0 1.2E-26 2.6E-31 147.2 15.1 125 11-135 1-125 (159)
83 cd04177 RSR1 RSR1 subgroup. R 100.0 1.2E-26 2.6E-31 149.5 15.0 127 10-137 1-128 (168)
84 PLN03118 Rab family protein; P 100.0 1.9E-26 4.1E-31 153.7 16.2 131 6-137 10-142 (211)
85 cd01863 Rab18 Rab18 subfamily. 100.0 2E-26 4.3E-31 147.3 15.5 119 11-129 1-120 (161)
86 cd04146 RERG_RasL11_like RERG/ 99.9 6.1E-27 1.3E-31 150.4 12.7 125 12-137 1-128 (165)
87 cd04135 Tc10 TC10 subfamily. 99.9 3E-26 6.4E-31 148.2 15.1 118 11-130 1-119 (174)
88 cd04148 RGK RGK subfamily. Th 99.9 1.9E-26 4E-31 154.6 14.2 125 11-137 1-128 (221)
89 KOG0097 GTPase Rab14, small G 99.9 5.2E-27 1.1E-31 143.1 10.3 135 4-138 5-139 (215)
90 cd04103 Centaurin_gamma Centau 99.9 3.9E-26 8.4E-31 145.9 14.1 120 11-137 1-123 (158)
91 cd04162 Arl9_Arfrp2_like Arl9/ 99.9 1.7E-26 3.8E-31 148.3 12.1 117 12-133 1-117 (164)
92 cd01873 RhoBTB RhoBTB subfamil 99.9 8.4E-26 1.8E-30 148.8 14.7 117 10-129 2-134 (195)
93 cd01870 RhoA_like RhoA-like su 99.9 2.2E-25 4.8E-30 144.2 14.6 119 10-130 1-120 (175)
94 cd00876 Ras Ras family. The R 99.9 1.8E-25 4E-30 142.3 13.5 125 12-137 1-126 (160)
95 KOG0395 Ras-related GTPase [Ge 99.9 7.9E-26 1.7E-30 148.5 11.4 129 9-138 2-131 (196)
96 PTZ00132 GTP-binding nuclear p 99.9 9.1E-25 2E-29 145.9 16.7 125 5-130 4-128 (215)
97 smart00177 ARF ARF-like small 99.9 2.3E-25 5.1E-30 144.5 13.4 118 8-130 11-129 (175)
98 cd04149 Arf6 Arf6 subfamily. 99.9 1.8E-25 3.9E-30 144.1 12.5 118 8-130 7-125 (168)
99 cd04150 Arf1_5_like Arf1-Arf5- 99.9 3.5E-25 7.5E-30 141.6 13.5 115 11-130 1-116 (159)
100 PLN00223 ADP-ribosylation fact 99.9 3.8E-25 8.2E-30 144.2 13.7 119 8-131 15-134 (181)
101 cd04161 Arl2l1_Arl13_like Arl2 99.9 4.8E-25 1E-29 142.0 13.6 115 12-131 1-116 (167)
102 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.9 4.9E-25 1.1E-29 143.9 13.7 120 9-129 2-123 (183)
103 cd04147 Ras_dva Ras-dva subfam 99.9 5.2E-25 1.1E-29 145.4 13.7 122 12-134 1-124 (198)
104 cd01893 Miro1 Miro1 subfamily. 99.9 9.7E-25 2.1E-29 140.4 14.3 119 11-132 1-120 (166)
105 PF08477 Miro: Miro-like prote 99.9 4.8E-25 1E-29 134.5 12.2 114 12-126 1-119 (119)
106 cd04139 RalA_RalB RalA/RalB su 99.9 1.3E-24 2.8E-29 139.0 14.4 123 11-134 1-124 (164)
107 KOG0081 GTPase Rab27, small G 99.9 2.4E-27 5.2E-32 146.8 1.5 132 7-138 6-147 (219)
108 cd04137 RheB Rheb (Ras Homolog 99.9 1E-24 2.2E-29 141.8 13.9 124 11-135 2-126 (180)
109 cd00157 Rho Rho (Ras homology) 99.9 2E-24 4.3E-29 139.1 15.0 119 11-131 1-120 (171)
110 PTZ00133 ADP-ribosylation fact 99.9 1E-24 2.2E-29 142.3 13.8 118 8-130 15-133 (182)
111 KOG0393 Ras-related small GTPa 99.9 1.4E-25 3.1E-30 145.2 8.4 121 8-130 2-124 (198)
112 cd04158 ARD1 ARD1 subfamily. 99.9 2.5E-24 5.3E-29 138.9 13.8 114 12-130 1-115 (169)
113 cd04154 Arl2 Arl2 subfamily. 99.9 2.5E-24 5.3E-29 139.3 13.9 119 7-130 11-130 (173)
114 cd04129 Rho2 Rho2 subfamily. 99.9 5.8E-24 1.3E-28 139.3 15.1 118 10-129 1-119 (187)
115 cd04157 Arl6 Arl6 subfamily. 99.9 2.1E-24 4.7E-29 137.8 12.5 115 12-130 1-119 (162)
116 KOG0083 GTPase Rab26/Rab37, sm 99.9 1.1E-26 2.4E-31 140.2 1.6 125 14-138 1-126 (192)
117 COG1100 GTPase SAR1 and relate 99.9 1.1E-23 2.4E-28 140.8 13.9 123 9-131 4-127 (219)
118 PF00025 Arf: ADP-ribosylation 99.9 2.1E-23 4.6E-28 135.3 14.5 120 6-130 10-130 (175)
119 KOG4252 GTP-binding protein [S 99.9 6.3E-26 1.4E-30 143.1 1.9 130 7-137 17-146 (246)
120 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.9 1.6E-23 3.4E-28 135.8 13.1 116 9-129 14-130 (174)
121 cd04156 ARLTS1 ARLTS1 subfamil 99.9 1.8E-23 4E-28 133.4 13.1 114 12-129 1-115 (160)
122 cd00878 Arf_Arl Arf (ADP-ribos 99.9 3.9E-23 8.4E-28 131.7 12.9 115 12-131 1-116 (158)
123 cd04151 Arl1 Arl1 subfamily. 99.9 4.6E-23 1E-27 131.5 13.2 114 12-130 1-115 (158)
124 KOG0070 GTP-binding ADP-ribosy 99.9 8.8E-24 1.9E-28 134.0 9.5 121 7-132 14-135 (181)
125 smart00178 SAR Sar1p-like memb 99.9 4.6E-23 1E-27 134.7 13.0 118 8-130 15-133 (184)
126 cd04160 Arfrp1 Arfrp1 subfamil 99.9 4.4E-23 9.6E-28 132.5 12.3 115 12-130 1-122 (167)
127 KOG0073 GTP-binding ADP-ribosy 99.9 7.3E-23 1.6E-27 127.3 11.7 119 7-130 13-132 (185)
128 cd00879 Sar1 Sar1 subfamily. 99.9 1.8E-22 3.9E-27 132.3 13.6 118 7-129 16-134 (190)
129 cd04159 Arl10_like Arl10-like 99.9 2E-22 4.2E-27 127.8 12.9 116 12-131 1-117 (159)
130 TIGR00231 small_GTP small GTP- 99.9 2.2E-21 4.8E-26 122.6 13.6 121 10-130 1-123 (161)
131 cd04155 Arl3 Arl3 subfamily. 99.9 3.4E-21 7.4E-26 124.4 13.2 120 6-130 10-130 (173)
132 KOG0071 GTP-binding ADP-ribosy 99.9 1.2E-21 2.7E-26 119.1 10.0 120 8-132 15-135 (180)
133 PTZ00099 rab6; Provisional 99.9 5.2E-21 1.1E-25 124.2 12.5 105 34-138 4-108 (176)
134 cd01878 HflX HflX subfamily. 99.9 4.8E-21 1E-25 127.0 12.1 122 8-131 39-169 (204)
135 cd01890 LepA LepA subfamily. 99.9 5.9E-21 1.3E-25 123.9 12.0 115 12-130 2-134 (179)
136 cd04105 SR_beta Signal recogni 99.9 7.4E-21 1.6E-25 126.1 12.2 119 12-131 2-125 (203)
137 cd01891 TypA_BipA TypA (tyrosi 99.9 4.6E-21 1E-25 126.2 10.9 116 11-130 3-132 (194)
138 cd01898 Obg Obg subfamily. Th 99.9 6.3E-21 1.4E-25 122.7 11.0 120 12-132 2-131 (170)
139 KOG3883 Ras family small GTPas 99.9 2E-20 4.3E-25 115.5 11.8 128 8-136 7-139 (198)
140 cd01897 NOG NOG1 is a nucleola 99.8 2.5E-20 5.5E-25 119.7 11.6 120 11-133 1-131 (168)
141 TIGR03156 GTP_HflX GTP-binding 99.8 1.7E-20 3.6E-25 133.1 11.7 120 9-130 188-316 (351)
142 cd00882 Ras_like_GTPase Ras-li 99.8 5.6E-20 1.2E-24 115.1 12.3 117 15-132 1-119 (157)
143 cd01887 IF2_eIF5B IF2/eIF5B (i 99.8 9.2E-20 2E-24 117.0 12.2 115 12-130 2-117 (168)
144 PRK12299 obgE GTPase CgtA; Rev 99.8 4.3E-20 9.4E-25 130.2 11.4 122 11-133 159-289 (335)
145 cd04171 SelB SelB subfamily. 99.8 1.1E-19 2.5E-24 116.0 12.2 112 12-130 2-119 (164)
146 KOG0074 GTP-binding ADP-ribosy 99.8 3.8E-20 8.1E-25 112.9 9.2 122 8-133 15-137 (185)
147 TIGR00450 mnmE_trmE_thdF tRNA 99.8 2.8E-19 6.2E-24 130.2 13.6 116 8-130 201-325 (442)
148 KOG1673 Ras GTPases [General f 99.8 5.8E-20 1.3E-24 113.7 7.5 123 6-129 16-138 (205)
149 KOG0075 GTP-binding ADP-ribosy 99.8 2E-20 4.4E-25 114.7 5.0 117 10-130 20-137 (186)
150 cd01879 FeoB Ferrous iron tran 99.8 4E-19 8.7E-24 112.9 11.0 111 15-133 1-119 (158)
151 KOG0096 GTPase Ran/TC4/GSP1 (n 99.8 5.4E-19 1.2E-23 112.6 10.4 130 1-131 1-130 (216)
152 cd01881 Obg_like The Obg-like 99.8 4E-19 8.7E-24 114.8 9.8 118 15-133 1-138 (176)
153 PRK11058 GTPase HflX; Provisio 99.8 9.8E-19 2.1E-23 126.8 12.2 118 11-129 198-323 (426)
154 PRK04213 GTP-binding protein; 99.8 1.4E-19 3E-24 119.7 7.0 115 7-130 6-145 (201)
155 PRK05291 trmE tRNA modificatio 99.8 8.6E-19 1.9E-23 128.1 11.6 115 9-131 214-337 (449)
156 cd04164 trmE TrmE (MnmE, ThdF, 99.8 2.5E-18 5.3E-23 109.0 12.3 113 11-131 2-123 (157)
157 PRK03003 GTP-binding protein D 99.8 7.9E-19 1.7E-23 129.2 11.1 114 10-129 38-160 (472)
158 TIGR02528 EutP ethanolamine ut 99.8 1.2E-19 2.6E-24 113.8 5.8 96 12-129 2-102 (142)
159 TIGR02729 Obg_CgtA Obg family 99.8 1.7E-18 3.8E-23 121.9 11.9 120 10-130 157-288 (329)
160 TIGR01393 lepA GTP-binding pro 99.8 2.5E-18 5.4E-23 129.1 12.6 117 10-130 3-137 (595)
161 TIGR00436 era GTP-binding prot 99.8 2E-18 4.3E-23 119.0 11.0 111 12-130 2-122 (270)
162 PRK15494 era GTPase Era; Provi 99.8 1.7E-18 3.7E-23 122.6 10.9 116 7-130 49-175 (339)
163 TIGR03598 GTPase_YsxC ribosome 99.8 3.3E-18 7.1E-23 111.3 11.4 117 7-130 15-144 (179)
164 TIGR00487 IF-2 translation ini 99.8 3.1E-18 6.7E-23 128.3 12.6 117 8-129 85-201 (587)
165 cd00881 GTP_translation_factor 99.8 5.2E-18 1.1E-22 110.6 11.3 112 12-129 1-128 (189)
166 PF02421 FeoB_N: Ferrous iron 99.8 3.8E-18 8.1E-23 107.9 10.0 115 11-133 1-123 (156)
167 PRK03003 GTP-binding protein D 99.8 7.7E-18 1.7E-22 124.0 12.3 116 8-129 209-336 (472)
168 PRK05306 infB translation init 99.8 7.6E-18 1.6E-22 129.1 12.5 118 7-130 287-404 (787)
169 cd04168 TetM_like Tet(M)-like 99.8 6.6E-18 1.4E-22 114.3 10.7 115 12-130 1-131 (237)
170 PRK12297 obgE GTPase CgtA; Rev 99.8 1.9E-17 4.1E-22 119.7 13.2 117 12-129 160-288 (424)
171 cd04169 RF3 RF3 subfamily. Pe 99.8 2.9E-17 6.3E-22 112.9 12.3 117 11-131 3-139 (267)
172 cd01889 SelB_euk SelB subfamil 99.8 1.5E-17 3.4E-22 109.3 10.2 115 11-129 1-134 (192)
173 cd01894 EngA1 EngA1 subfamily. 99.8 1.4E-17 2.9E-22 105.6 9.6 112 14-131 1-121 (157)
174 CHL00189 infB translation init 99.7 1.4E-17 3E-22 126.8 11.0 119 8-130 242-362 (742)
175 PRK00093 GTP-binding protein D 99.7 2.7E-17 5.9E-22 120.2 12.3 111 11-129 2-123 (435)
176 COG2229 Predicted GTPase [Gene 99.7 4.7E-17 1E-21 103.5 11.4 125 4-132 4-138 (187)
177 cd01895 EngA2 EngA2 subfamily. 99.7 6.1E-17 1.3E-21 104.0 12.3 115 10-130 2-128 (174)
178 KOG1707 Predicted Ras related/ 99.7 1.5E-17 3.3E-22 121.2 10.1 128 7-136 6-136 (625)
179 cd01885 EF2 EF2 (for archaea a 99.7 1.7E-17 3.6E-22 111.1 9.4 122 12-137 2-148 (222)
180 PRK12296 obgE GTPase CgtA; Rev 99.7 2.1E-17 4.5E-22 121.1 10.6 120 10-131 159-300 (500)
181 cd04167 Snu114p Snu114p subfam 99.7 3.3E-17 7.3E-22 109.4 10.8 113 12-128 2-136 (213)
182 COG1084 Predicted GTPase [Gene 99.7 2.6E-17 5.7E-22 113.2 10.1 124 7-134 165-299 (346)
183 TIGR03594 GTPase_EngA ribosome 99.7 6.8E-17 1.5E-21 117.9 12.3 115 8-128 170-296 (429)
184 TIGR03594 GTPase_EngA ribosome 99.7 2.8E-17 6.1E-22 119.9 10.2 114 12-131 1-123 (429)
185 cd04163 Era Era subfamily. Er 99.7 9.1E-17 2E-21 102.4 11.2 116 9-129 2-125 (168)
186 PRK12298 obgE GTPase CgtA; Rev 99.7 6.4E-17 1.4E-21 116.2 10.8 118 12-130 161-290 (390)
187 KOG0077 Vesicle coat complex C 99.7 2E-17 4.4E-22 103.4 7.0 119 8-131 18-137 (193)
188 PRK00454 engB GTP-binding prot 99.7 1.2E-16 2.7E-21 105.0 11.2 116 8-130 22-150 (196)
189 PRK10218 GTP-binding protein; 99.7 1.4E-16 3E-21 119.7 12.6 119 9-131 4-136 (607)
190 TIGR00475 selB selenocysteine- 99.7 1.5E-16 3.2E-21 119.5 12.3 112 11-131 1-119 (581)
191 cd01850 CDC_Septin CDC/Septin. 99.7 2.7E-16 5.9E-21 108.6 12.4 117 8-129 2-157 (276)
192 TIGR01394 TypA_BipA GTP-bindin 99.7 1.4E-16 3E-21 119.7 11.5 117 11-131 2-132 (594)
193 PRK00089 era GTPase Era; Revie 99.7 1.9E-16 4.1E-21 110.3 11.3 117 8-129 3-127 (292)
194 PF00009 GTP_EFTU: Elongation 99.7 1E-16 2.2E-21 105.1 9.2 116 9-128 2-135 (188)
195 PRK12317 elongation factor 1-a 99.7 1.4E-16 3.1E-21 116.1 10.8 122 6-129 2-153 (425)
196 TIGR00491 aIF-2 translation in 99.7 2E-16 4.3E-21 118.5 11.7 114 9-129 3-135 (590)
197 PRK09554 feoB ferrous iron tra 99.7 2.9E-16 6.2E-21 120.8 12.7 117 9-133 2-130 (772)
198 PRK05433 GTP-binding protein L 99.7 2.3E-16 4.9E-21 118.8 11.8 118 9-130 6-141 (600)
199 PRK09518 bifunctional cytidyla 99.7 2.6E-16 5.6E-21 120.8 12.0 118 8-130 273-398 (712)
200 KOG0076 GTP-binding ADP-ribosy 99.7 2.6E-17 5.7E-22 103.6 4.7 122 7-132 14-143 (197)
201 cd01888 eIF2_gamma eIF2-gamma 99.7 2.9E-16 6.3E-21 104.1 9.9 118 11-130 1-152 (203)
202 KOG4423 GTP-binding protein-li 99.7 1.6E-19 3.5E-24 114.8 -5.4 129 3-131 18-151 (229)
203 PF01926 MMR_HSR1: 50S ribosom 99.7 2E-15 4.2E-20 91.7 12.8 106 12-124 1-116 (116)
204 TIGR00483 EF-1_alpha translati 99.7 3E-16 6.5E-21 114.4 10.6 122 6-129 3-155 (426)
205 cd00880 Era_like Era (E. coli 99.7 3.7E-16 8.1E-21 98.6 9.8 113 15-132 1-121 (163)
206 PRK09518 bifunctional cytidyla 99.7 4.3E-16 9.3E-21 119.6 11.8 116 9-130 449-576 (712)
207 PRK00093 GTP-binding protein D 99.7 6.8E-16 1.5E-20 112.8 12.3 115 8-129 171-298 (435)
208 cd04166 CysN_ATPS CysN_ATPS su 99.7 3.2E-16 6.9E-21 104.3 9.7 115 12-129 1-144 (208)
209 cd04170 EF-G_bact Elongation f 99.7 2.9E-16 6.2E-21 108.2 9.8 113 12-130 1-131 (268)
210 TIGR00437 feoB ferrous iron tr 99.7 3.4E-16 7.4E-21 117.7 10.7 109 17-133 1-117 (591)
211 PRK04004 translation initiatio 99.7 9.5E-16 2.1E-20 115.1 12.7 115 7-128 3-136 (586)
212 PF04670 Gtr1_RagA: Gtr1/RagA 99.7 1.5E-15 3.2E-20 102.0 12.2 116 12-129 1-125 (232)
213 cd01886 EF-G Elongation factor 99.7 6.6E-16 1.4E-20 106.3 10.6 115 12-130 1-131 (270)
214 PRK15467 ethanolamine utilizat 99.7 3.3E-16 7.1E-21 100.1 7.9 99 12-129 3-105 (158)
215 TIGR00503 prfC peptide chain r 99.7 5.1E-16 1.1E-20 115.3 10.0 119 7-129 8-146 (527)
216 cd01896 DRG The developmentall 99.7 2.2E-15 4.8E-20 101.8 12.2 83 12-96 2-91 (233)
217 cd04104 p47_IIGP_like p47 (47- 99.7 1.6E-15 3.4E-20 100.2 10.8 112 10-128 1-120 (197)
218 PF09439 SRPRB: Signal recogni 99.7 2.9E-16 6.3E-21 101.4 6.8 118 10-131 3-128 (181)
219 cd01884 EF_Tu EF-Tu subfamily. 99.7 3E-15 6.5E-20 98.6 11.5 116 10-129 2-132 (195)
220 COG1159 Era GTPase [General fu 99.7 1.6E-15 3.4E-20 103.5 10.3 121 7-132 3-131 (298)
221 PRK00741 prfC peptide chain re 99.7 7.9E-16 1.7E-20 114.3 9.2 121 7-131 7-147 (526)
222 COG0486 ThdF Predicted GTPase 99.6 1.5E-15 3.2E-20 109.0 10.1 119 8-132 215-341 (454)
223 cd01876 YihA_EngB The YihA (En 99.6 3.6E-15 7.8E-20 95.2 10.0 109 12-129 1-124 (170)
224 PRK13351 elongation factor G; 99.6 2.8E-15 6.2E-20 114.9 10.2 119 8-130 6-140 (687)
225 cd01883 EF1_alpha Eukaryotic e 99.6 2.7E-15 5.9E-20 100.5 8.9 116 12-129 1-151 (219)
226 PRK12735 elongation factor Tu; 99.6 8.5E-15 1.8E-19 105.9 11.9 120 6-129 8-142 (396)
227 KOG0072 GTP-binding ADP-ribosy 99.6 6.8E-16 1.5E-20 94.6 4.6 118 8-130 16-134 (182)
228 PLN03126 Elongation factor Tu; 99.6 1.3E-14 2.7E-19 106.8 11.9 120 6-129 77-211 (478)
229 CHL00071 tufA elongation facto 99.6 1.9E-14 4.1E-19 104.4 12.6 121 6-130 8-143 (409)
230 COG1160 Predicted GTPases [Gen 99.6 1.5E-15 3.2E-20 108.7 6.7 112 11-129 4-126 (444)
231 TIGR00484 EF-G translation elo 99.6 8.8E-15 1.9E-19 112.2 11.3 120 7-130 7-142 (689)
232 PRK12736 elongation factor Tu; 99.6 1.7E-14 3.7E-19 104.3 11.3 119 7-129 9-142 (394)
233 TIGR00991 3a0901s02IAP34 GTP-b 99.6 2.9E-14 6.2E-19 98.9 11.6 128 5-134 33-172 (313)
234 TIGR00485 EF-Tu translation el 99.6 2.7E-14 5.8E-19 103.3 11.8 121 6-130 8-143 (394)
235 COG1160 Predicted GTPases [Gen 99.6 1.5E-14 3.2E-19 103.7 9.9 120 9-133 177-307 (444)
236 KOG1423 Ras-like GTPase ERA [C 99.6 1.1E-14 2.4E-19 99.6 8.6 122 5-130 67-200 (379)
237 TIGR03680 eif2g_arch translati 99.6 1.7E-14 3.7E-19 104.6 9.8 121 8-130 2-149 (406)
238 PRK04000 translation initiatio 99.6 1.9E-14 4.2E-19 104.4 9.8 126 3-130 2-154 (411)
239 KOG1489 Predicted GTP-binding 99.6 2.5E-14 5.5E-19 98.2 9.6 119 11-130 197-327 (366)
240 TIGR00490 aEF-2 translation el 99.6 1.4E-14 3.1E-19 111.4 8.8 119 7-129 16-152 (720)
241 cd01853 Toc34_like Toc34-like 99.6 1.1E-13 2.4E-18 94.2 11.9 125 6-131 27-165 (249)
242 COG2262 HflX GTPases [General 99.6 8.5E-14 1.8E-18 98.6 11.3 122 7-130 189-319 (411)
243 PRK00049 elongation factor Tu; 99.6 1.2E-13 2.7E-18 99.8 12.4 120 6-129 8-142 (396)
244 cd01852 AIG1 AIG1 (avrRpt2-ind 99.5 4.8E-14 1E-18 93.0 9.2 116 11-130 1-131 (196)
245 PLN03127 Elongation factor Tu; 99.5 1.3E-13 2.9E-18 100.9 12.0 119 7-129 58-191 (447)
246 PRK12739 elongation factor G; 99.5 5.5E-14 1.2E-18 107.8 9.6 119 8-130 6-140 (691)
247 PRK10512 selenocysteinyl-tRNA- 99.5 2.8E-13 6.1E-18 102.4 12.6 114 12-130 2-119 (614)
248 smart00010 small_GTPase Small 99.5 1.7E-13 3.6E-18 83.7 8.9 97 11-136 1-98 (124)
249 PRK05124 cysN sulfate adenylyl 99.5 2.2E-13 4.7E-18 100.5 10.8 120 7-129 24-174 (474)
250 PLN00043 elongation factor 1-a 99.5 3.5E-13 7.6E-18 98.7 11.6 119 6-128 3-158 (447)
251 PRK00007 elongation factor G; 99.5 2.7E-13 5.8E-18 104.1 11.4 120 7-130 7-142 (693)
252 COG0218 Predicted GTPase [Gene 99.5 4.8E-13 1E-17 86.9 10.7 115 8-130 22-150 (200)
253 TIGR02034 CysN sulfate adenyly 99.5 2.2E-13 4.7E-18 98.9 9.7 116 11-129 1-147 (406)
254 cd04165 GTPBP1_like GTPBP1-lik 99.5 7.3E-13 1.6E-17 89.0 11.5 113 12-130 1-153 (224)
255 PTZ00141 elongation factor 1- 99.5 6.4E-13 1.4E-17 97.4 11.2 119 6-127 3-157 (446)
256 COG3596 Predicted GTPase [Gene 99.5 1E-13 2.2E-18 93.7 6.3 120 7-130 36-163 (296)
257 PRK05506 bifunctional sulfate 99.5 3.7E-13 8E-18 102.5 10.1 121 6-129 20-171 (632)
258 COG0370 FeoB Fe2+ transport sy 99.5 7.3E-13 1.6E-17 98.9 11.3 120 9-136 2-129 (653)
259 KOG1191 Mitochondrial GTPase [ 99.5 3.5E-13 7.7E-18 97.2 8.1 122 8-130 266-404 (531)
260 PLN00116 translation elongatio 99.4 1.3E-12 2.8E-17 102.1 10.1 119 6-128 15-163 (843)
261 cd00066 G-alpha G protein alph 99.4 2.1E-12 4.5E-17 91.0 9.4 73 58-130 160-243 (317)
262 PRK12740 elongation factor G; 99.4 3.3E-12 7.3E-17 97.9 11.0 109 16-130 1-127 (668)
263 PTZ00416 elongation factor 2; 99.4 2.3E-12 5E-17 100.6 9.4 118 7-128 16-157 (836)
264 COG0532 InfB Translation initi 99.4 5.4E-12 1.2E-16 92.1 10.0 118 9-130 4-122 (509)
265 KOG1707 Predicted Ras related/ 99.4 1.5E-11 3.2E-16 90.5 12.2 124 5-132 420-543 (625)
266 PF04548 AIG1: AIG1 family; I 99.4 5E-12 1.1E-16 84.4 8.6 117 11-131 1-132 (212)
267 smart00275 G_alpha G protein a 99.4 1.6E-11 3.4E-16 87.3 11.5 72 59-130 184-266 (342)
268 COG5256 TEF1 Translation elong 99.4 9.3E-12 2E-16 88.5 10.2 124 6-131 3-161 (428)
269 COG0536 Obg Predicted GTPase [ 99.4 5.7E-12 1.2E-16 87.6 8.8 117 13-130 162-290 (369)
270 KOG1490 GTP-binding protein CR 99.4 1.3E-12 2.9E-17 94.6 5.7 125 7-136 165-302 (620)
271 PF10662 PduV-EutP: Ethanolami 99.3 2.8E-12 6E-17 79.8 5.6 96 12-128 3-102 (143)
272 PRK07560 elongation factor EF- 99.3 1.4E-11 3E-16 95.3 10.0 118 8-129 18-153 (731)
273 PF05049 IIGP: Interferon-indu 99.3 1.9E-12 4.1E-17 92.0 4.6 113 8-127 33-153 (376)
274 KOG1145 Mitochondrial translat 99.3 1.9E-11 4.1E-16 89.5 9.5 118 8-130 151-268 (683)
275 cd01899 Ygr210 Ygr210 subfamil 99.3 4.3E-11 9.4E-16 84.2 9.9 81 13-93 1-110 (318)
276 PF00735 Septin: Septin; Inte 99.3 8E-11 1.7E-15 81.6 10.8 118 9-130 3-157 (281)
277 COG1163 DRG Predicted GTPase [ 99.3 6.1E-11 1.3E-15 82.1 9.4 87 9-97 62-155 (365)
278 PF00350 Dynamin_N: Dynamin fa 99.3 8.4E-11 1.8E-15 75.5 9.3 63 60-125 102-168 (168)
279 KOG1532 GTPase XAB1, interacts 99.3 2E-12 4.3E-17 87.6 1.6 123 6-130 15-196 (366)
280 PRK09602 translation-associate 99.2 1.5E-10 3.4E-15 83.6 10.9 83 11-93 2-113 (396)
281 KOG0090 Signal recognition par 99.2 4.9E-11 1.1E-15 78.0 7.3 116 11-131 39-161 (238)
282 PTZ00327 eukaryotic translatio 99.2 8.1E-11 1.8E-15 86.4 9.1 123 6-130 30-186 (460)
283 KOG3887 Predicted small GTPase 99.2 2.8E-11 6E-16 80.8 5.7 125 11-137 28-158 (347)
284 TIGR00993 3a0901s04IAP86 chlor 99.2 2.4E-10 5.3E-15 86.1 11.2 119 9-129 117-250 (763)
285 COG0480 FusA Translation elong 99.2 1.7E-10 3.8E-15 88.1 10.3 120 7-130 7-143 (697)
286 cd01882 BMS1 Bms1. Bms1 is an 99.2 4.3E-10 9.4E-15 75.8 11.2 111 7-129 36-147 (225)
287 KOG0462 Elongation factor-type 99.2 3.2E-10 7E-15 83.2 10.7 119 9-131 59-193 (650)
288 COG0481 LepA Membrane GTPase L 99.2 3.5E-10 7.5E-15 81.9 9.4 120 8-131 7-144 (603)
289 KOG3886 GTP-binding protein [S 99.2 1.1E-10 2.3E-15 77.5 6.3 119 10-130 4-131 (295)
290 PRK14845 translation initiatio 99.1 4.4E-10 9.6E-15 89.0 10.1 103 21-130 472-593 (1049)
291 KOG0082 G-protein alpha subuni 99.1 4.1E-10 8.8E-15 79.5 8.6 74 58-131 194-278 (354)
292 COG1217 TypA Predicted membran 99.1 5.3E-10 1.2E-14 80.8 9.0 118 10-131 5-136 (603)
293 PTZ00258 GTP-binding protein; 99.1 8.6E-10 1.9E-14 79.3 9.9 86 8-93 19-126 (390)
294 smart00053 DYNc Dynamin, GTPas 99.1 1.9E-09 4E-14 73.1 10.5 69 59-130 125-207 (240)
295 KOG0468 U5 snRNP-specific prot 99.1 1.2E-09 2.7E-14 81.9 9.8 118 6-127 124-261 (971)
296 PRK09601 GTP-binding protein Y 99.1 1E-09 2.2E-14 78.2 8.8 83 11-93 3-107 (364)
297 cd01900 YchF YchF subfamily. 99.1 3.7E-10 8.1E-15 77.8 6.1 80 13-92 1-102 (274)
298 KOG1954 Endocytosis/signaling 99.1 7.7E-10 1.7E-14 78.1 7.4 119 11-132 59-228 (532)
299 KOG0458 Elongation factor 1 al 99.0 5.2E-09 1.1E-13 77.4 10.9 124 7-132 174-332 (603)
300 PRK09866 hypothetical protein; 99.0 6.4E-09 1.4E-13 78.4 11.4 69 59-129 230-303 (741)
301 cd01857 HSR1_MMR1 HSR1/MMR1. 99.0 9.5E-10 2.1E-14 68.9 6.0 54 12-69 85-138 (141)
302 TIGR02836 spore_IV_A stage IV 99.0 8.9E-09 1.9E-13 74.2 11.3 115 10-127 17-192 (492)
303 PF03029 ATP_bind_1: Conserved 99.0 1.2E-10 2.6E-15 78.9 1.3 71 60-130 92-171 (238)
304 COG5019 CDC3 Septin family pro 99.0 1.3E-08 2.9E-13 71.7 10.7 63 7-69 20-92 (373)
305 KOG2655 Septin family protein 99.0 7.8E-09 1.7E-13 73.2 9.6 119 7-130 18-173 (366)
306 cd04178 Nucleostemin_like Nucl 99.0 2.7E-09 5.8E-14 69.1 6.7 58 8-69 115-172 (172)
307 cd01858 NGP_1 NGP-1. Autoanti 99.0 3.9E-09 8.5E-14 67.3 7.1 57 9-69 101-157 (157)
308 KOG1144 Translation initiation 99.0 1.8E-09 4E-14 81.8 6.2 119 9-131 474-608 (1064)
309 COG4108 PrfC Peptide chain rel 98.9 3.5E-09 7.5E-14 76.2 7.2 118 8-131 10-149 (528)
310 cd01856 YlqF YlqF. Proteins o 98.9 5.8E-09 1.2E-13 67.4 6.7 58 8-69 113-170 (171)
311 PF05783 DLIC: Dynein light in 98.9 3.2E-08 6.9E-13 73.0 10.5 97 8-107 23-126 (472)
312 COG4917 EutP Ethanolamine util 98.9 1.4E-09 3.1E-14 65.6 2.8 103 12-134 3-109 (148)
313 TIGR03596 GTPase_YlqF ribosome 98.9 1E-08 2.3E-13 71.1 7.1 58 8-69 116-173 (276)
314 cd01859 MJ1464 MJ1464. This f 98.9 1.3E-08 2.7E-13 64.8 6.9 57 9-69 100-156 (156)
315 PRK09563 rbgA GTPase YlqF; Rev 98.8 1.7E-08 3.8E-13 70.3 7.9 59 8-70 119-177 (287)
316 COG2895 CysN GTPases - Sulfate 98.8 7.9E-08 1.7E-12 67.7 10.9 122 7-131 3-155 (431)
317 cd01855 YqeH YqeH. YqeH is an 98.8 8.4E-09 1.8E-13 67.7 5.8 57 10-69 127-190 (190)
318 PRK13768 GTPase; Provisional 98.8 4.7E-08 1E-12 67.0 8.5 70 60-131 98-178 (253)
319 KOG0467 Translation elongation 98.8 2.6E-08 5.7E-13 75.7 7.5 130 5-138 4-148 (887)
320 COG1161 Predicted GTPases [Gen 98.7 2.9E-08 6.3E-13 70.2 6.4 59 7-69 129-187 (322)
321 KOG1486 GTP-binding protein DR 98.7 3.1E-07 6.7E-12 62.2 10.5 87 9-97 61-154 (364)
322 TIGR00157 ribosome small subun 98.7 2.2E-08 4.9E-13 68.3 4.9 61 70-133 24-85 (245)
323 KOG1547 Septin CDC10 and relat 98.7 2.4E-07 5.1E-12 62.3 9.1 61 9-69 45-114 (336)
324 COG0050 TufB GTPases - transla 98.7 3E-08 6.6E-13 68.3 4.8 121 7-131 9-144 (394)
325 COG0012 Predicted GTPase, prob 98.7 1.2E-07 2.5E-12 67.3 7.8 84 10-93 2-108 (372)
326 cd01849 YlqF_related_GTPase Yl 98.7 8.9E-08 1.9E-12 60.9 6.6 58 8-69 98-155 (155)
327 KOG3905 Dynein light intermedi 98.7 1.9E-07 4.2E-12 65.3 8.5 98 8-108 50-154 (473)
328 TIGR00092 GTP-binding protein 98.7 1.4E-07 3E-12 67.5 7.6 83 11-93 3-108 (368)
329 KOG0410 Predicted GTP binding 98.6 1.3E-07 2.9E-12 65.9 6.6 120 9-130 177-309 (410)
330 KOG0461 Selenocysteine-specifi 98.6 5.2E-07 1.1E-11 63.7 8.8 119 7-130 4-137 (522)
331 PF03193 DUF258: Protein of un 98.6 9.1E-08 2E-12 61.0 4.2 59 11-72 36-100 (161)
332 TIGR03348 VI_IcmF type VI secr 98.6 3.1E-07 6.6E-12 74.7 8.2 112 13-129 114-257 (1169)
333 KOG1491 Predicted GTP-binding 98.5 4.9E-07 1.1E-11 63.4 7.4 86 8-93 18-125 (391)
334 COG1618 Predicted nucleotide k 98.5 4.1E-06 9E-11 53.1 10.8 113 8-126 3-141 (179)
335 PRK09435 membrane ATPase/prote 98.5 8.3E-07 1.8E-11 63.0 8.5 62 58-130 148-209 (332)
336 cd01851 GBP Guanylate-binding 98.5 3.8E-06 8.1E-11 56.7 11.3 94 9-103 6-113 (224)
337 PRK12288 GTPase RsgA; Reviewed 98.5 2.9E-07 6.2E-12 65.8 6.2 57 13-72 208-270 (347)
338 COG5192 BMS1 GTP-binding prote 98.5 1.1E-06 2.3E-11 65.8 8.9 115 5-130 64-178 (1077)
339 PRK12289 GTPase RsgA; Reviewed 98.5 3.3E-07 7.2E-12 65.6 5.6 55 13-71 175-236 (352)
340 KOG0099 G protein subunit Galp 98.5 7.6E-07 1.6E-11 60.6 7.0 73 58-130 201-284 (379)
341 COG5257 GCD11 Translation init 98.5 4.1E-07 8.9E-12 63.5 5.6 126 3-130 3-155 (415)
342 KOG0085 G protein subunit Galp 98.5 4.2E-08 9.1E-13 65.6 0.5 74 57-130 197-281 (359)
343 PRK13796 GTPase YqeH; Provisio 98.4 5.3E-07 1.2E-11 65.0 5.8 56 11-69 161-220 (365)
344 TIGR03597 GTPase_YqeH ribosome 98.4 8.8E-07 1.9E-11 63.7 6.7 57 11-70 155-215 (360)
345 TIGR00157 ribosome small subun 98.4 6E-07 1.3E-11 61.3 5.6 56 12-71 122-183 (245)
346 KOG2486 Predicted GTPase [Gene 98.4 7.3E-07 1.6E-11 61.1 5.2 113 8-129 134-262 (320)
347 TIGR00750 lao LAO/AO transport 98.4 2.9E-06 6.3E-11 59.6 8.4 62 58-130 126-187 (300)
348 KOG0464 Elongation factor G [T 98.4 2.5E-07 5.5E-12 66.7 2.4 116 10-129 37-168 (753)
349 cd03112 CobW_like The function 98.3 3.9E-06 8.4E-11 53.6 7.6 21 13-33 3-23 (158)
350 KOG0705 GTPase-activating prot 98.3 6E-07 1.3E-11 66.5 3.6 114 9-129 29-143 (749)
351 COG1162 Predicted GTPases [Gen 98.3 1.5E-06 3.3E-11 60.4 5.3 59 12-73 166-230 (301)
352 KOG1143 Predicted translation 98.3 1.5E-06 3.2E-11 62.1 5.2 120 8-131 165-319 (591)
353 COG3276 SelB Selenocysteine-sp 98.3 4E-06 8.8E-11 60.7 7.2 114 13-131 3-119 (447)
354 cd01854 YjeQ_engC YjeQ/EngC. 98.2 3.5E-06 7.6E-11 58.9 6.1 60 11-73 162-227 (287)
355 PRK00098 GTPase RsgA; Reviewed 98.2 3.4E-06 7.3E-11 59.3 5.9 56 12-70 166-227 (298)
356 KOG0463 GTP-binding protein GP 98.2 7.6E-06 1.7E-10 58.6 6.6 121 7-131 130-289 (641)
357 PF00503 G-alpha: G-protein al 98.2 1.8E-05 4E-10 57.6 8.8 73 57-129 234-317 (389)
358 KOG0460 Mitochondrial translat 98.1 8.7E-06 1.9E-10 57.5 6.1 122 7-131 51-186 (449)
359 KOG0447 Dynamin-like GTP bindi 98.1 3.4E-05 7.4E-10 57.8 9.5 119 10-131 308-495 (980)
360 KOG1424 Predicted GTP-binding 98.1 3.8E-06 8.2E-11 61.9 4.4 56 10-69 314-369 (562)
361 COG3523 IcmF Type VI protein s 98.1 1E-05 2.2E-10 65.4 6.0 115 13-129 128-270 (1188)
362 TIGR01425 SRP54_euk signal rec 98.1 2.6E-05 5.7E-10 57.1 7.7 113 10-129 100-253 (429)
363 PF03266 NTPase_1: NTPase; In 98.0 2.9E-05 6.2E-10 50.1 6.1 52 12-66 1-52 (168)
364 COG5258 GTPBP1 GTPase [General 98.0 2.3E-05 5E-10 56.3 5.9 120 6-131 113-271 (527)
365 cd03111 CpaE_like This protein 98.0 0.00011 2.5E-09 43.7 7.9 99 17-124 7-106 (106)
366 KOG2484 GTPase [General functi 97.9 1.2E-05 2.6E-10 57.7 3.9 59 7-69 249-307 (435)
367 cd03222 ABC_RNaseL_inhibitor T 97.9 0.00025 5.3E-09 46.2 9.7 102 12-126 27-133 (177)
368 cd02042 ParA ParA and ParB of 97.9 0.00013 2.9E-09 43.0 7.8 82 13-106 2-84 (104)
369 KOG1487 GTP-binding protein DR 97.9 7.4E-05 1.6E-09 51.1 7.0 87 11-100 60-154 (358)
370 cd03115 SRP The signal recogni 97.9 0.00015 3.3E-09 46.8 8.1 67 58-130 82-154 (173)
371 KOG0448 Mitofusin 1 GTPase, in 97.9 0.00032 6.8E-09 53.7 10.6 119 8-130 107-276 (749)
372 TIGR00064 ftsY signal recognit 97.9 7E-05 1.5E-09 52.0 6.7 65 58-129 154-231 (272)
373 KOG0465 Mitochondrial elongati 97.9 1.7E-05 3.8E-10 59.6 3.8 119 8-130 37-171 (721)
374 PRK10416 signal recognition pa 97.8 0.00015 3.2E-09 51.5 8.2 24 9-32 113-136 (318)
375 cd01854 YjeQ_engC YjeQ/EngC. 97.8 3.5E-05 7.6E-10 53.9 4.9 50 78-130 74-124 (287)
376 PF13207 AAA_17: AAA domain; P 97.8 2E-05 4.4E-10 47.8 3.2 22 12-33 1-22 (121)
377 cd00009 AAA The AAA+ (ATPases 97.8 0.00028 6E-09 43.5 8.4 25 10-34 19-43 (151)
378 PRK08118 topology modulation p 97.8 2.2E-05 4.8E-10 50.6 3.3 22 12-33 3-24 (167)
379 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.8 0.00049 1.1E-08 43.2 9.1 23 12-34 28-50 (144)
380 PF13671 AAA_33: AAA domain; P 97.8 2.3E-05 5E-10 48.8 3.0 21 13-33 2-22 (143)
381 PRK14722 flhF flagellar biosyn 97.8 0.00032 6.9E-09 50.8 8.9 23 10-32 137-159 (374)
382 PRK07261 topology modulation p 97.8 2.8E-05 6.2E-10 50.3 3.3 22 12-33 2-23 (171)
383 PRK13695 putative NTPase; Prov 97.7 0.00042 9.1E-09 44.8 8.6 22 11-32 1-22 (174)
384 cd01983 Fer4_NifH The Fer4_Nif 97.7 0.00063 1.4E-08 39.0 8.6 69 13-95 2-71 (99)
385 COG0563 Adk Adenylate kinase a 97.7 3.3E-05 7.2E-10 50.3 3.3 22 12-33 2-23 (178)
386 PF06858 NOG1: Nucleolar GTP-b 97.7 0.00023 4.9E-09 37.3 5.5 43 83-126 14-58 (58)
387 PRK12289 GTPase RsgA; Reviewed 97.7 0.00011 2.3E-09 52.9 5.8 53 75-130 82-135 (352)
388 cd02038 FleN-like FleN is a me 97.7 0.00035 7.6E-09 43.6 7.4 107 14-128 4-110 (139)
389 KOG4273 Uncharacterized conser 97.7 0.00022 4.9E-09 48.6 6.8 116 10-129 4-123 (418)
390 cd01857 HSR1_MMR1 HSR1/MMR1. 97.7 4.6E-05 1E-09 47.6 3.2 49 78-130 7-57 (141)
391 COG0194 Gmk Guanylate kinase [ 97.7 3.7E-05 7.9E-10 50.0 2.6 24 11-34 5-28 (191)
392 COG1126 GlnQ ABC-type polar am 97.6 6.2E-05 1.4E-09 50.2 3.5 26 12-37 30-55 (240)
393 KOG3859 Septins (P-loop GTPase 97.6 0.00017 3.7E-09 49.9 5.7 62 8-69 40-105 (406)
394 KOG2423 Nucleolar GTPase [Gene 97.6 2.5E-05 5.3E-10 56.3 1.7 60 6-69 303-362 (572)
395 COG1116 TauB ABC-type nitrate/ 97.6 6.7E-05 1.5E-09 50.9 3.5 23 13-35 32-54 (248)
396 PF00004 AAA: ATPase family as 97.6 6.7E-05 1.5E-09 45.9 3.2 21 13-33 1-21 (132)
397 PRK12727 flagellar biosynthesi 97.6 0.0003 6.5E-09 53.0 7.0 23 10-32 350-372 (559)
398 PF13521 AAA_28: AAA domain; P 97.6 5E-05 1.1E-09 48.6 2.6 22 12-33 1-22 (163)
399 PRK14738 gmk guanylate kinase; 97.6 7.6E-05 1.7E-09 49.7 3.6 28 6-33 9-36 (206)
400 KOG2485 Conserved ATP/GTP bind 97.6 0.00019 4.1E-09 50.2 5.5 62 7-69 140-206 (335)
401 cd02019 NK Nucleoside/nucleoti 97.6 9.1E-05 2E-09 40.6 3.1 21 13-33 2-22 (69)
402 PF09547 Spore_IV_A: Stage IV 97.6 0.0011 2.3E-08 48.6 9.3 23 11-33 18-40 (492)
403 PRK14737 gmk guanylate kinase; 97.6 6E-05 1.3E-09 49.4 2.8 22 12-33 6-27 (186)
404 PF13555 AAA_29: P-loop contai 97.6 0.0001 2.2E-09 39.5 3.0 21 12-32 25-45 (62)
405 TIGR00150 HI0065_YjeE ATPase, 97.6 0.00048 1.1E-08 42.7 6.4 23 11-33 23-45 (133)
406 smart00382 AAA ATPases associa 97.5 0.00011 2.3E-09 45.0 3.3 26 11-36 3-28 (148)
407 KOG0066 eIF2-interacting prote 97.5 0.00097 2.1E-08 49.3 8.5 25 10-34 613-637 (807)
408 PF00005 ABC_tran: ABC transpo 97.5 8.7E-05 1.9E-09 45.9 2.9 23 12-34 13-35 (137)
409 PRK06217 hypothetical protein; 97.5 0.00011 2.4E-09 48.0 3.3 23 11-33 2-24 (183)
410 cd01855 YqeH YqeH. YqeH is an 97.5 0.0001 2.2E-09 48.4 3.2 53 72-130 24-76 (190)
411 PRK00098 GTPase RsgA; Reviewed 97.5 0.0002 4.2E-09 50.5 4.8 47 80-129 78-125 (298)
412 cd00071 GMPK Guanosine monopho 97.5 0.00015 3.2E-09 45.3 3.5 21 13-33 2-22 (137)
413 PRK11537 putative GTP-binding 97.5 0.00071 1.5E-08 48.1 7.2 21 13-33 7-27 (318)
414 COG1120 FepC ABC-type cobalami 97.5 0.00011 2.4E-09 50.4 3.0 21 13-33 31-51 (258)
415 PRK03839 putative kinase; Prov 97.5 0.00014 3.1E-09 47.3 3.3 22 12-33 2-23 (180)
416 COG1117 PstB ABC-type phosphat 97.5 0.00011 2.4E-09 49.0 2.7 21 13-33 36-56 (253)
417 PRK12288 GTPase RsgA; Reviewed 97.4 0.00038 8.3E-09 50.0 5.6 48 80-130 118-165 (347)
418 TIGR00101 ureG urease accessor 97.4 0.00016 3.5E-09 48.0 3.5 24 10-33 1-24 (199)
419 TIGR02322 phosphon_PhnN phosph 97.4 0.00015 3.2E-09 47.1 3.1 22 12-33 3-24 (179)
420 COG3640 CooC CO dehydrogenase 97.4 0.0016 3.5E-08 44.0 8.0 46 80-128 153-198 (255)
421 PRK14530 adenylate kinase; Pro 97.4 0.00016 3.6E-09 48.4 3.4 22 11-32 4-25 (215)
422 COG1419 FlhF Flagellar GTP-bin 97.4 0.00084 1.8E-08 48.8 7.1 24 10-33 203-226 (407)
423 PRK13949 shikimate kinase; Pro 97.4 0.00017 3.6E-09 46.6 3.3 22 12-33 3-24 (169)
424 COG1136 SalX ABC-type antimicr 97.4 0.00019 4E-09 48.4 3.6 24 12-35 33-56 (226)
425 COG3839 MalK ABC-type sugar tr 97.4 0.00018 3.8E-09 51.3 3.6 23 13-35 32-54 (338)
426 PF07728 AAA_5: AAA domain (dy 97.4 0.00017 3.6E-09 44.9 3.1 22 12-33 1-22 (139)
427 PRK10078 ribose 1,5-bisphospho 97.4 0.00015 3.3E-09 47.4 3.0 22 12-33 4-25 (186)
428 PF13238 AAA_18: AAA domain; P 97.4 0.00016 3.6E-09 43.9 3.0 21 13-33 1-21 (129)
429 PF04665 Pox_A32: Poxvirus A32 97.4 0.00018 3.9E-09 49.0 3.3 26 8-33 11-36 (241)
430 cd01858 NGP_1 NGP-1. Autoanti 97.4 0.00029 6.4E-09 44.8 4.2 50 79-130 5-54 (157)
431 cd01859 MJ1464 MJ1464. This f 97.4 0.00015 3.3E-09 46.0 2.8 52 74-129 4-55 (156)
432 TIGR00235 udk uridine kinase. 97.4 0.00024 5.3E-09 47.3 3.8 26 8-33 4-29 (207)
433 TIGR03263 guanyl_kin guanylate 97.3 0.0002 4.4E-09 46.4 3.0 22 12-33 3-24 (180)
434 PRK01889 GTPase RsgA; Reviewed 97.3 0.00039 8.4E-09 50.2 4.6 59 12-73 197-261 (356)
435 PF03205 MobB: Molybdopterin g 97.3 0.00023 4.9E-09 44.6 3.0 22 12-33 2-23 (140)
436 PTZ00088 adenylate kinase 1; P 97.3 0.00025 5.5E-09 48.0 3.4 25 9-33 5-29 (229)
437 PF05621 TniB: Bacterial TniB 97.3 0.00094 2E-08 46.8 6.2 104 7-124 58-189 (302)
438 PRK14532 adenylate kinase; Pro 97.3 0.00027 5.9E-09 46.2 3.3 21 12-32 2-22 (188)
439 COG0523 Putative GTPases (G3E 97.3 0.0017 3.6E-08 46.3 7.4 23 13-35 4-26 (323)
440 PRK14531 adenylate kinase; Pro 97.3 0.00029 6.4E-09 46.0 3.3 22 11-32 3-24 (183)
441 TIGR01360 aden_kin_iso1 adenyl 97.3 0.00025 5.4E-09 46.2 3.0 20 12-31 5-24 (188)
442 cd01428 ADK Adenylate kinase ( 97.3 0.00025 5.3E-09 46.5 2.9 22 12-33 1-22 (194)
443 cd01130 VirB11-like_ATPase Typ 97.3 0.0003 6.5E-09 46.1 3.3 25 10-34 25-49 (186)
444 cd02023 UMPK Uridine monophosp 97.3 0.00027 5.9E-09 46.6 3.1 21 13-33 2-22 (198)
445 PRK00625 shikimate kinase; Pro 97.3 0.00032 6.9E-09 45.5 3.3 22 12-33 2-23 (173)
446 TIGR00959 ffh signal recogniti 97.3 0.001 2.2E-08 49.1 6.3 23 9-31 98-120 (428)
447 cd03255 ABC_MJ0796_Lo1CDE_FtsE 97.3 0.00029 6.2E-09 47.2 3.2 23 12-34 32-54 (218)
448 cd03238 ABC_UvrA The excision 97.3 0.00032 6.9E-09 45.7 3.2 22 11-32 22-43 (176)
449 PRK10646 ADP-binding protein; 97.3 0.003 6.5E-08 40.1 7.4 22 12-33 30-51 (153)
450 PRK05480 uridine/cytidine kina 97.3 0.00038 8.2E-09 46.4 3.6 26 8-33 4-29 (209)
451 TIGR01359 UMP_CMP_kin_fam UMP- 97.2 0.00031 6.6E-09 45.7 3.1 21 13-33 2-22 (183)
452 cd00820 PEPCK_HprK Phosphoenol 97.2 0.00031 6.7E-09 41.9 2.8 21 11-31 16-36 (107)
453 PRK08233 hypothetical protein; 97.2 0.00038 8.2E-09 45.1 3.5 23 11-33 4-26 (182)
454 PRK10751 molybdopterin-guanine 97.2 0.00044 9.6E-09 44.8 3.7 24 10-33 6-29 (173)
455 PF13401 AAA_22: AAA domain; P 97.2 0.00032 7E-09 42.9 2.9 24 11-34 5-28 (131)
456 PRK02496 adk adenylate kinase; 97.2 0.0004 8.6E-09 45.3 3.4 22 11-32 2-23 (184)
457 cd01131 PilT Pilus retraction 97.2 0.0024 5.1E-08 42.3 7.1 22 13-34 4-25 (198)
458 COG3842 PotA ABC-type spermidi 97.2 0.00038 8.2E-09 49.9 3.5 24 13-36 34-57 (352)
459 TIGR01313 therm_gnt_kin carboh 97.2 0.00028 6E-09 45.1 2.6 21 13-33 1-21 (163)
460 PRK00300 gmk guanylate kinase; 97.2 0.00035 7.5E-09 46.3 3.1 25 9-33 4-28 (205)
461 cd03225 ABC_cobalt_CbiO_domain 97.2 0.00033 7.1E-09 46.7 3.0 23 12-34 29-51 (211)
462 TIGR01351 adk adenylate kinase 97.2 0.00032 7E-09 46.8 3.0 21 12-32 1-21 (210)
463 TIGR00960 3a0501s02 Type II (G 97.2 0.00036 7.7E-09 46.7 3.2 23 12-34 31-53 (216)
464 cd03226 ABC_cobalt_CbiO_domain 97.2 0.00036 7.9E-09 46.3 3.2 23 12-34 28-50 (205)
465 TIGR01166 cbiO cobalt transpor 97.2 0.00033 7.3E-09 45.9 2.9 23 12-34 20-42 (190)
466 cd03264 ABC_drug_resistance_li 97.2 0.00034 7.4E-09 46.6 3.0 22 12-33 27-48 (211)
467 PF13191 AAA_16: AAA ATPase do 97.2 0.00033 7.2E-09 45.3 2.9 25 8-32 22-46 (185)
468 smart00072 GuKc Guanylate kina 97.2 0.00035 7.6E-09 45.7 3.0 22 13-34 5-26 (184)
469 COG3840 ThiQ ABC-type thiamine 97.2 0.0004 8.7E-09 45.4 3.1 25 12-36 27-51 (231)
470 cd03261 ABC_Org_Solvent_Resist 97.2 0.00038 8.2E-09 47.2 3.2 23 12-34 28-50 (235)
471 cd03262 ABC_HisP_GlnQ_permease 97.2 0.0004 8.6E-09 46.3 3.2 23 12-34 28-50 (213)
472 cd03292 ABC_FtsE_transporter F 97.2 0.0004 8.7E-09 46.3 3.2 23 12-34 29-51 (214)
473 TIGR03608 L_ocin_972_ABC putat 97.2 0.00041 8.9E-09 46.0 3.2 23 12-34 26-48 (206)
474 KOG3347 Predicted nucleotide k 97.2 0.00035 7.5E-09 44.0 2.6 26 8-33 5-30 (176)
475 TIGR02315 ABC_phnC phosphonate 97.2 0.00036 7.8E-09 47.5 3.0 23 12-34 30-52 (243)
476 TIGR00073 hypB hydrogenase acc 97.2 0.00048 1E-08 45.9 3.5 26 8-33 20-45 (207)
477 PRK05057 aroK shikimate kinase 97.2 0.00046 1E-08 44.7 3.3 24 10-33 4-27 (172)
478 COG1121 ZnuC ABC-type Mn/Zn tr 97.2 0.00038 8.2E-09 47.7 3.0 21 12-32 32-52 (254)
479 TIGR02673 FtsE cell division A 97.2 0.00042 9.2E-09 46.2 3.2 23 12-34 30-52 (214)
480 cd03293 ABC_NrtD_SsuB_transpor 97.2 0.00038 8.3E-09 46.7 3.0 23 12-34 32-54 (220)
481 cd03269 ABC_putative_ATPase Th 97.2 0.00043 9.4E-09 46.1 3.2 23 12-34 28-50 (210)
482 PHA00729 NTP-binding motif con 97.2 0.00048 1E-08 46.5 3.3 24 10-33 17-40 (226)
483 PRK04195 replication factor C 97.2 0.0028 6.1E-08 47.6 7.7 24 10-33 39-62 (482)
484 cd03224 ABC_TM1139_LivF_branch 97.2 0.00041 8.9E-09 46.5 3.1 23 12-34 28-50 (222)
485 TIGR02211 LolD_lipo_ex lipopro 97.2 0.00044 9.5E-09 46.4 3.2 23 12-34 33-55 (221)
486 PF00625 Guanylate_kin: Guanyl 97.2 0.0001 2.3E-09 48.1 0.2 21 13-33 5-25 (183)
487 COG4525 TauB ABC-type taurine 97.2 0.0004 8.7E-09 45.9 2.8 22 12-33 33-54 (259)
488 PF05729 NACHT: NACHT domain 97.1 0.00045 9.7E-09 43.8 3.0 21 13-33 3-23 (166)
489 cd03260 ABC_PstB_phosphate_tra 97.1 0.00049 1.1E-08 46.4 3.3 23 12-34 28-50 (227)
490 cd03218 ABC_YhbG The ABC trans 97.1 0.00046 9.9E-09 46.6 3.2 23 12-34 28-50 (232)
491 PRK06762 hypothetical protein; 97.1 0.00048 1E-08 44.1 3.1 23 11-33 3-25 (166)
492 cd03263 ABC_subfamily_A The AB 97.1 0.00042 9.1E-09 46.4 3.0 23 12-34 30-52 (220)
493 cd03265 ABC_DrrA DrrA is the A 97.1 0.00047 1E-08 46.2 3.2 23 12-34 28-50 (220)
494 PF02367 UPF0079: Uncharacteri 97.1 0.00085 1.8E-08 41.1 4.0 59 11-72 16-77 (123)
495 cd03259 ABC_Carb_Solutes_like 97.1 0.00048 1E-08 46.0 3.2 23 12-34 28-50 (213)
496 COG3638 ABC-type phosphate/pho 97.1 0.00045 9.7E-09 46.7 2.9 21 13-33 33-53 (258)
497 cd03229 ABC_Class3 This class 97.1 0.00047 1E-08 44.8 3.0 22 12-33 28-49 (178)
498 cd03219 ABC_Mj1267_LivG_branch 97.1 0.00044 9.6E-09 46.8 3.0 23 12-34 28-50 (236)
499 cd02021 GntK Gluconate kinase 97.1 0.00051 1.1E-08 43.2 3.1 21 13-33 2-22 (150)
500 PLN02200 adenylate kinase fami 97.1 0.00064 1.4E-08 46.3 3.7 24 9-32 42-65 (234)
No 1
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.8e-37 Score=196.05 Aligned_cols=133 Identities=44% Similarity=0.752 Sum_probs=128.0
Q ss_pred CCcceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCE
Q 032487 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 85 (139)
Q Consensus 6 ~~~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ 85 (139)
.-...+||+++|+.|+|||+|+.+|....+...+..|+|+++..+++.++++.+++++|||+||++|+.+..++++++++
T Consensus 5 ~~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahG 84 (205)
T KOG0084|consen 5 EYDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 84 (205)
T ss_pred ccceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCe
Confidence 44678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCCcCCCcccc
Q 032487 86 AIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEAS 138 (139)
Q Consensus 86 ~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~~~v~~~e~ 138 (139)
+|+|||+++..||+.+..|+.++.++...++|.++||||||+.+.+.++.++|
T Consensus 85 ii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a 137 (205)
T KOG0084|consen 85 IIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEEA 137 (205)
T ss_pred EEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhheecCHHHH
Confidence 99999999999999999999999999888999999999999999999998876
No 2
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1e-35 Score=189.21 Aligned_cols=132 Identities=43% Similarity=0.773 Sum_probs=125.3
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEE
Q 032487 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 86 (139)
Q Consensus 7 ~~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 86 (139)
..+.+|++++|..++||||||++++...+...|.+|+|.+|.++++.+.+..+++++|||+|||+|+.+.+.+++++.++
T Consensus 19 ~~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~va 98 (221)
T KOG0094|consen 19 PLKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 98 (221)
T ss_pred cceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEE
Confidence 44569999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHhCCC-CCeEEEEEeCCCCcCCcCCCcccc
Q 032487 87 IIVYDITNQASFERAKKWVQELQAQGNP-NMVMALAGNKADLLDARKVTAEAS 138 (139)
Q Consensus 87 i~v~~~~~~~s~~~~~~~~~~~~~~~~~-~~p~ivv~~k~D~~~~~~v~~~e~ 138 (139)
++|||+.|..||+...+|++.+.+.... ++-+++||||.||.+.++++.+|+
T Consensus 99 viVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg 151 (221)
T KOG0094|consen 99 VIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEG 151 (221)
T ss_pred EEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHH
Confidence 9999999999999999999999997655 578999999999999999999885
No 3
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3e-34 Score=182.18 Aligned_cols=132 Identities=68% Similarity=1.056 Sum_probs=125.1
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEE
Q 032487 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 86 (139)
Q Consensus 7 ~~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 86 (139)
....+|++++|..++|||||+.++..+.+.+...+|+|..|.++++..++..++|.||||+|+++|..+.+.++++++++
T Consensus 2 ~~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AA 81 (200)
T KOG0092|consen 2 ATREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAA 81 (200)
T ss_pred CcceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEE
Confidence 45689999999999999999999999999887789999999999999999899999999999999999999999999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCCcCCCcccc
Q 032487 87 IIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEAS 138 (139)
Q Consensus 87 i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~~~v~~~e~ 138 (139)
|+|||+++.+||..++.|+..+.+..+++.-+.+||||+||.+.++|+.+|+
T Consensus 82 ivvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ea 133 (200)
T KOG0092|consen 82 IVVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREVEFEEA 133 (200)
T ss_pred EEEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccccHHHH
Confidence 9999999999999999999999998777888899999999999999998875
No 4
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.1e-33 Score=178.73 Aligned_cols=131 Identities=41% Similarity=0.757 Sum_probs=126.7
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEEE
Q 032487 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (139)
Q Consensus 8 ~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 87 (139)
...+|++++|+.|+|||+|+.+++...+.+.+..|+|.++..+.+.++++.+++++|||+|++.++++...+++.+.+++
T Consensus 4 ~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~Gal 83 (216)
T KOG0098|consen 4 AYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGAL 83 (216)
T ss_pred cceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcceE
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCCcCCCcccc
Q 032487 88 IVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEAS 138 (139)
Q Consensus 88 ~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~~~v~~~e~ 138 (139)
+|||++.++||..+..|+..++++...++.+++++||+||...+.|+.+|+
T Consensus 84 LVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs~EEG 134 (216)
T KOG0098|consen 84 LVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARREVSKEEG 134 (216)
T ss_pred EEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhccccccHHHH
Confidence 999999999999999999999999778999999999999999999999885
No 5
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.3e-33 Score=180.84 Aligned_cols=133 Identities=41% Similarity=0.747 Sum_probs=127.5
Q ss_pred CCcceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCE
Q 032487 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 85 (139)
Q Consensus 6 ~~~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ 85 (139)
+...-+||+++|+++||||+++.++....+...+..++|+++..+++..++..+.+++|||+||+.+..+...++++|.+
T Consensus 8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~g 87 (207)
T KOG0078|consen 8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMG 87 (207)
T ss_pred CcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCe
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCCcCCCcccc
Q 032487 86 AIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEAS 138 (139)
Q Consensus 86 ~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~~~v~~~e~ 138 (139)
+++|||+.+..||+.+..|++.+..+....+|.++||||+|+.+.++|+.+++
T Consensus 88 i~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~g 140 (207)
T KOG0078|consen 88 ILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERG 140 (207)
T ss_pred eEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccccccccHHHH
Confidence 99999999999999999999999999888999999999999999999988764
No 6
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8e-33 Score=177.98 Aligned_cols=134 Identities=44% Similarity=0.770 Sum_probs=128.3
Q ss_pred CCCcceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCC
Q 032487 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAA 84 (139)
Q Consensus 5 ~~~~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~ 84 (139)
.+...-+|++++|++++|||-|+.++...++..+..+|+|.++.++++.++++.++.+||||+||++|+.+...+++++-
T Consensus 9 ~~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAv 88 (222)
T KOG0087|consen 9 EEYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAV 88 (222)
T ss_pred cccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccc
Confidence 44567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCCcCCCcccc
Q 032487 85 AAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEAS 138 (139)
Q Consensus 85 ~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~~~v~~~e~ 138 (139)
++++|||++.+.+|+.+.+|+.+++.+..+++++++||||+||.+.+.|+++++
T Consensus 89 GAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~lraV~te~~ 142 (222)
T KOG0087|consen 89 GALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHLRAVPTEDG 142 (222)
T ss_pred eeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhccccchhhh
Confidence 999999999999999999999999999889999999999999999999998875
No 7
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=100.00 E-value=2.3e-32 Score=180.66 Aligned_cols=127 Identities=34% Similarity=0.677 Sum_probs=116.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEEEEEE
Q 032487 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY 90 (139)
Q Consensus 11 ~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~ 90 (139)
+.|+++|+.|+|||||++++..+.+...+.++.+.++..+.+.+++..+.+++||++|++.+..++..+++++|++++||
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf 80 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY 80 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence 47999999999999999999999998888889998888888888888899999999999999999999999999999999
Q ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCCcCCCccc
Q 032487 91 DITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEA 137 (139)
Q Consensus 91 ~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~~~v~~~e 137 (139)
|++++.||+.++.|+..+......+.|+++|+||+|+.+.++++.++
T Consensus 81 Dvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~~ 127 (202)
T cd04120 81 DITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREISRQQ 127 (202)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHH
Confidence 99999999999999999887756789999999999998877777654
No 8
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=100.00 E-value=1.9e-31 Score=174.69 Aligned_cols=130 Identities=31% Similarity=0.582 Sum_probs=117.2
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEEE
Q 032487 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (139)
Q Consensus 8 ~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 87 (139)
...+||+++|..++|||||++++....+...+.++.+.++....+.+++..+.+++||++|++.+..++..+++++|+++
T Consensus 4 ~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~il 83 (189)
T cd04121 4 DYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGII 83 (189)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEE
Confidence 45699999999999999999999998887777778888887787888888899999999999999999999999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCCcCCCcccc
Q 032487 88 IVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEAS 138 (139)
Q Consensus 88 ~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~~~v~~~e~ 138 (139)
+|||++++.+|+.++.|+..+.... +..|++|||||+|+.+.++++.+++
T Consensus 84 lVfD~t~~~Sf~~~~~w~~~i~~~~-~~~piilVGNK~DL~~~~~v~~~~~ 133 (189)
T cd04121 84 LVYDITNRWSFDGIDRWIKEIDEHA-PGVPKILVGNRLHLAFKRQVATEQA 133 (189)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccchhccCCCHHHH
Confidence 9999999999999999999998764 5899999999999988877876653
No 9
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.3e-32 Score=168.12 Aligned_cols=135 Identities=41% Similarity=0.705 Sum_probs=127.8
Q ss_pred CCCCcceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCC
Q 032487 4 TGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGA 83 (139)
Q Consensus 4 ~~~~~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~ 83 (139)
++....-+|++++|+.|+|||+|+.++...++......++|.++.++.+.+.++.++++||||+|+++|++..+.+++++
T Consensus 3 sEtYDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGA 82 (214)
T KOG0086|consen 3 SETYDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGA 82 (214)
T ss_pred chhhhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccc
Confidence 34456678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCCcCCCcccc
Q 032487 84 AAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEAS 138 (139)
Q Consensus 84 ~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~~~v~~~e~ 138 (139)
.++++|||+.++++|+.+..|+..++....+++.+++++||.|+.++++|+..|+
T Consensus 83 AGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~VtflEA 137 (214)
T KOG0086|consen 83 AGALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEA 137 (214)
T ss_pred cceEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChhhhhhHHHH
Confidence 9999999999999999999999999998889999999999999999999988775
No 10
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.3e-32 Score=166.85 Aligned_cols=132 Identities=43% Similarity=0.736 Sum_probs=124.8
Q ss_pred CCcceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCE
Q 032487 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 85 (139)
Q Consensus 6 ~~~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ 85 (139)
..+.-+||+++|+.|+|||+|++++.++-+++.-..++|.++-.+++++++.++++++|||+|+++|+++..++++.+++
T Consensus 3 dykflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsaha 82 (213)
T KOG0095|consen 3 DYKFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHA 82 (213)
T ss_pred ccceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcce
Confidence 34567899999999999999999999999999889999999999999999999999999999999999999999999999
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCCcCCCccc
Q 032487 86 AIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEA 137 (139)
Q Consensus 86 ~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~~~v~~~e 137 (139)
++++||++...+|+++.+|+..+..+...++--|+|+||.|+.+.++++.+.
T Consensus 83 lilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~drrevp~qi 134 (213)
T KOG0095|consen 83 LILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADRREVPQQI 134 (213)
T ss_pred EEEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhhhhhhHHH
Confidence 9999999999999999999999999887888899999999999999888764
No 11
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.7e-32 Score=164.63 Aligned_cols=131 Identities=36% Similarity=0.675 Sum_probs=123.5
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEEE
Q 032487 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (139)
Q Consensus 8 ~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 87 (139)
...+|++++|+..+|||||+.++....+.+...++.|.++.++++.-..+.+++++|||+|++.++.+...++++++++|
T Consensus 19 DymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfi 98 (193)
T KOG0093|consen 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFI 98 (193)
T ss_pred cceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEE
Confidence 34679999999999999999999999999999999999999999877778899999999999999999999999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCCcCCCcccc
Q 032487 88 IVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEAS 138 (139)
Q Consensus 88 ~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~~~v~~~e~ 138 (139)
++||+.|.+||..++.|...+...+..+.|+|+|+||||+.+++-++.+.+
T Consensus 99 LmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~eRvis~e~g 149 (193)
T KOG0093|consen 99 LMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSERVISHERG 149 (193)
T ss_pred EEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCccceeeeHHHH
Confidence 999999999999999999999999889999999999999999998887754
No 12
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=100.00 E-value=3.3e-32 Score=171.76 Aligned_cols=132 Identities=39% Similarity=0.729 Sum_probs=121.6
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEE
Q 032487 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 86 (139)
Q Consensus 7 ~~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 86 (139)
+...+|++++|++|+|||||++++...++...+..++|.++..+.+.+++..+.+++|||+|+++|.++--.+++++|.+
T Consensus 6 K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcC 85 (210)
T KOG0394|consen 6 KRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCC 85 (210)
T ss_pred cccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceE
Confidence 46679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHhCC----CCCeEEEEEeCCCCcCC--cCCCcccc
Q 032487 87 IIVYDITNQASFERAKKWVQELQAQGN----PNMVMALAGNKADLLDA--RKVTAEAS 138 (139)
Q Consensus 87 i~v~~~~~~~s~~~~~~~~~~~~~~~~----~~~p~ivv~~k~D~~~~--~~v~~~e~ 138 (139)
+++||++++.||+.+..|.+.+..... ..-|++++|||+|+.+. ++|+.++|
T Consensus 86 vlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~A 143 (210)
T KOG0394|consen 86 VLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKA 143 (210)
T ss_pred EEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHH
Confidence 999999999999999999999776532 46799999999999773 78887654
No 13
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=99.98 E-value=1.4e-31 Score=165.63 Aligned_cols=133 Identities=41% Similarity=0.764 Sum_probs=123.9
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEE
Q 032487 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 86 (139)
Q Consensus 7 ~~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 86 (139)
.-..+||+++|..|+|||||+-++....+.+..+.++|.++.++.+.+++..+++.||||+|+++|+.+.+.+++++.++
T Consensus 8 ~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGi 87 (209)
T KOG0080|consen 8 YDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGI 87 (209)
T ss_pred cceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCcee
Confidence 35579999999999999999999999999998888999999999999999999999999999999999999999999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEeCCCCcCCcCCCccccC
Q 032487 87 IIVYDITNQASFERAKKWVQELQAQGN-PNMVMALAGNKADLLDARKVTAEASI 139 (139)
Q Consensus 87 i~v~~~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~~k~D~~~~~~v~~~e~~ 139 (139)
|+|||+..+++|..+..|++++..++- ++.-.++|+||+|...++.|+-+|++
T Consensus 88 IlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~ 141 (209)
T KOG0080|consen 88 ILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGL 141 (209)
T ss_pred EEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccHHHHH
Confidence 999999999999999999999998753 45667999999999989999988874
No 14
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.98 E-value=7.2e-31 Score=168.84 Aligned_cols=128 Identities=42% Similarity=0.749 Sum_probs=115.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEEEEE
Q 032487 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIV 89 (139)
Q Consensus 10 ~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v 89 (139)
.+||+++|++|+|||||++++..+.+...+.++.+.++....+..++..+.+.+||++|++.+...+..+++++|++++|
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 81 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 81 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence 47999999999999999999999988877788888888777778888889999999999999999999999999999999
Q ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCCcCCCccc
Q 032487 90 YDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEA 137 (139)
Q Consensus 90 ~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~~~v~~~e 137 (139)
||++++.+|+.+..|+..+.....+..|+++|+||+|+.+.+.++.++
T Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~ 129 (166)
T cd04122 82 YDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEE 129 (166)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCcCHHH
Confidence 999999999999999999887656778999999999998877776554
No 15
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.97 E-value=1.3e-30 Score=169.90 Aligned_cols=121 Identities=31% Similarity=0.605 Sum_probs=108.9
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEE
Q 032487 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 86 (139)
Q Consensus 7 ~~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 86 (139)
++..+||+++|++++|||||++++..+.+...+.++.+..+ ...+.+++..+.+.+|||+|++.+..++..+++++|++
T Consensus 2 ~~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~-~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~ 80 (182)
T cd04172 2 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV 80 (182)
T ss_pred CcceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeee-EEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEE
Confidence 46788999999999999999999999998888888887655 45677888889999999999999999999999999999
Q ss_pred EEEEECCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEeCCCCcC
Q 032487 87 IIVYDITNQASFERA-KKWVQELQAQGNPNMVMALAGNKADLLD 129 (139)
Q Consensus 87 i~v~~~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~~k~D~~~ 129 (139)
++|||++++.||+.+ ..|+..+.... +..|+++||||+|+.+
T Consensus 81 ilvyDit~~~Sf~~~~~~w~~~i~~~~-~~~piilVgNK~DL~~ 123 (182)
T cd04172 81 LICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRT 123 (182)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEeEChhhhc
Confidence 999999999999997 79999998874 5789999999999965
No 16
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.97 E-value=1.6e-30 Score=168.70 Aligned_cols=119 Identities=37% Similarity=0.669 Sum_probs=107.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEEEEEE
Q 032487 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY 90 (139)
Q Consensus 11 ~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~ 90 (139)
+|++++|++++|||||+.++..+.+...+.++.+..+ ...+..++..+++.+|||+|++.+..++..++++++++++||
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~-~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvy 80 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 80 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeee-EEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEE
Confidence 6899999999999999999999999888888888665 455677888899999999999999999999999999999999
Q ss_pred ECCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEeCCCCcCCc
Q 032487 91 DITNQASFERA-KKWVQELQAQGNPNMVMALAGNKADLLDAR 131 (139)
Q Consensus 91 ~~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~~k~D~~~~~ 131 (139)
|++++.||+.+ +.|+..+.... .+.|+++||||+|+.+.+
T Consensus 81 d~~~~~Sf~~~~~~w~~~i~~~~-~~~piilvgnK~Dl~~~~ 121 (176)
T cd04133 81 SLISRASYENVLKKWVPELRHYA-PNVPIVLVGTKLDLRDDK 121 (176)
T ss_pred EcCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeChhhccCh
Confidence 99999999998 78999998764 579999999999997653
No 17
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=99.97 E-value=1.5e-31 Score=163.50 Aligned_cols=129 Identities=42% Similarity=0.722 Sum_probs=121.1
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEEEE
Q 032487 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAII 88 (139)
Q Consensus 9 ~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 88 (139)
.-+|++|+|++|+|||+|+.++....+...|..++|.++..+++.+++...+++|||++|++.|+.+...++++.+++++
T Consensus 7 hLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~v 86 (198)
T KOG0079|consen 7 HLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIV 86 (198)
T ss_pred HHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEE
Confidence 34688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCCcCCCcccc
Q 032487 89 VYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEAS 138 (139)
Q Consensus 89 v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~~~v~~~e~ 138 (139)
|||+.+.+||.+.++|++.+++.+ +.+|-++||||+|.++.+-|..++|
T Consensus 87 VYDVTn~ESF~Nv~rWLeei~~nc-dsv~~vLVGNK~d~~~RrvV~t~dA 135 (198)
T KOG0079|consen 87 VYDVTNGESFNNVKRWLEEIRNNC-DSVPKVLVGNKNDDPERRVVDTEDA 135 (198)
T ss_pred EEECcchhhhHhHHHHHHHHHhcC-ccccceecccCCCCccceeeehHHH
Confidence 999999999999999999999985 4899999999999999888777654
No 18
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.97 E-value=3.1e-30 Score=165.25 Aligned_cols=128 Identities=39% Similarity=0.691 Sum_probs=115.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEEEEEE
Q 032487 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY 90 (139)
Q Consensus 11 ~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~ 90 (139)
+||+++|++|+|||||++++..+.+.+.+.++.+.++....+..++..+.+.+||++|++.+...+..+++.+|++++||
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY 80 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence 58999999999999999999999988878888888887778888887889999999999999988899999999999999
Q ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCCcCCCcccc
Q 032487 91 DITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEAS 138 (139)
Q Consensus 91 ~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~~~v~~~e~ 138 (139)
|++++.+|+.+..|+..+........|+++|+||+|+.+.++++.+++
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~ 128 (161)
T cd04117 81 DISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQG 128 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHH
Confidence 999999999999999999877556799999999999988877776553
No 19
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.97 E-value=2.8e-30 Score=167.94 Aligned_cols=118 Identities=30% Similarity=0.607 Sum_probs=106.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEEEEE
Q 032487 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIV 89 (139)
Q Consensus 10 ~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v 89 (139)
++||+++|++++|||||++++....+...+.++.+..+ ...+.+++..+.+++|||+|++.+..+++.+++++|++++|
T Consensus 1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilv 79 (178)
T cd04131 1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENY-TASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLIC 79 (178)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEE-EEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEE
Confidence 47999999999999999999999998887888887655 45677888889999999999999999999999999999999
Q ss_pred EECCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEeCCCCcC
Q 032487 90 YDITNQASFERA-KKWVQELQAQGNPNMVMALAGNKADLLD 129 (139)
Q Consensus 90 ~~~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~~k~D~~~ 129 (139)
||++++.||+.+ ..|+..+.... +..|+++||||+|+.+
T Consensus 80 fdit~~~Sf~~~~~~w~~~i~~~~-~~~~iilVgnK~DL~~ 119 (178)
T cd04131 80 FDISRPETLDSVLKKWRGEIQEFC-PNTKVLLVGCKTDLRT 119 (178)
T ss_pred EECCChhhHHHHHHHHHHHHHHHC-CCCCEEEEEEChhhhc
Confidence 999999999995 79999998874 5789999999999964
No 20
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.97 E-value=3.1e-30 Score=166.05 Aligned_cols=129 Identities=41% Similarity=0.739 Sum_probs=115.6
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEEEE
Q 032487 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAII 88 (139)
Q Consensus 9 ~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 88 (139)
..+||+++|++|+|||||++++.+..+...+.++.+.++....+..++..+.+.+||++|++.+...+..+++++|++++
T Consensus 2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~ 81 (167)
T cd01867 2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (167)
T ss_pred cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEE
Confidence 45899999999999999999999999888888888888877777888878899999999999998888889999999999
Q ss_pred EEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCCcCCCccc
Q 032487 89 VYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEA 137 (139)
Q Consensus 89 v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~~~v~~~e 137 (139)
|||++++.+|+.+..|+..+......+.|+++|+||+|+.+.+++..++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~ 130 (167)
T cd01867 82 VYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEE 130 (167)
T ss_pred EEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHH
Confidence 9999999999999999999988756789999999999998776665543
No 21
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.97 E-value=4.9e-30 Score=164.86 Aligned_cols=126 Identities=40% Similarity=0.720 Sum_probs=112.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEEEEEE
Q 032487 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY 90 (139)
Q Consensus 11 ~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~ 90 (139)
+||+++|++|+|||||++++.+.++...+.++.+.++....+..++....+.+||++|++.+...+..+++++|++++||
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~ 81 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence 79999999999999999999999988777888887777777777777789999999999999999999999999999999
Q ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCCcCCCcc
Q 032487 91 DITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAE 136 (139)
Q Consensus 91 ~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~~~v~~~ 136 (139)
|++++.+++.+..|+..+........|+++|+||+|+.+.+.+..+
T Consensus 82 d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~ 127 (165)
T cd01865 82 DITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSE 127 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCHH
Confidence 9999999999999999998775567899999999999877655543
No 22
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.97 E-value=3.5e-30 Score=170.06 Aligned_cols=127 Identities=25% Similarity=0.447 Sum_probs=111.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEEC-----CcEEEEEEEeCCCcccccccchhhhcCCCE
Q 032487 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVN-----DATVKFEIWDTAGQERYHSLAPMYYRGAAA 85 (139)
Q Consensus 11 ~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ 85 (139)
+||+++|++++|||||++++....+...+.++.+.++..+.+.++ +..+.+++||++|++.+..++..+++++++
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 589999999999999999999999888888899887777776663 457899999999999999999999999999
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhC-------------------CCCCeEEEEEeCCCCcCCcCCCccc
Q 032487 86 AIIVYDITNQASFERAKKWVQELQAQG-------------------NPNMVMALAGNKADLLDARKVTAEA 137 (139)
Q Consensus 86 ~i~v~~~~~~~s~~~~~~~~~~~~~~~-------------------~~~~p~ivv~~k~D~~~~~~v~~~e 137 (139)
+++|||++++.||+.++.|+..+.... ....|+++||||+|+.+++.++.++
T Consensus 81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~ 151 (202)
T cd04102 81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNL 151 (202)
T ss_pred EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchHH
Confidence 999999999999999999999987631 2468999999999998877665543
No 23
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.97 E-value=5.3e-30 Score=163.97 Aligned_cols=127 Identities=43% Similarity=0.787 Sum_probs=118.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEEEEEEE
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYD 91 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~~ 91 (139)
||+++|+++||||||+++|.+..+...+.++.+.+.....+..++..+.+.+||++|++.+...+...+.++|++++|||
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd 80 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD 80 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 79999999999999999999999988889999889989999999999999999999999999888899999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCCcCCCcccc
Q 032487 92 ITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEAS 138 (139)
Q Consensus 92 ~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~~~v~~~e~ 138 (139)
.+++.||+.++.|+..+........|+++++||+|+.+.++++.+++
T Consensus 81 ~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~~~~~ 127 (162)
T PF00071_consen 81 VTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVSVEEA 127 (162)
T ss_dssp TTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSCHHHH
T ss_pred ccccccccccccccccccccccccccceeeeccccccccccchhhHH
Confidence 99999999999999999998666799999999999999888887654
No 24
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.97 E-value=1.2e-29 Score=163.02 Aligned_cols=128 Identities=45% Similarity=0.780 Sum_probs=113.4
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEEEE
Q 032487 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAII 88 (139)
Q Consensus 9 ~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 88 (139)
..+||+++|++|+|||||++++..+.+...+.++.+.++....+..++..+.+.+||+||++.+...+..+++.+|++++
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll 81 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII 81 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 45899999999999999999999988877777788777777778888877899999999999999888899999999999
Q ss_pred EEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCCcCCCcc
Q 032487 89 VYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAE 136 (139)
Q Consensus 89 v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~~~v~~~ 136 (139)
|||++++.+|+.++.|+..+........|+++|+||+|+.+.+++..+
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~ 129 (165)
T cd01864 82 AYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFE 129 (165)
T ss_pred EEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHH
Confidence 999999999999999999998865678999999999999877655544
No 25
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.97 E-value=1.2e-29 Score=167.85 Aligned_cols=127 Identities=35% Similarity=0.686 Sum_probs=111.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEEC-CcEEEEEEEeCCCcccccccchhhhcCCCEEEEE
Q 032487 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVN-DATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIV 89 (139)
Q Consensus 11 ~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v 89 (139)
+||+++|++|+|||||+++|....+...+.++.+.++....+..+ +..+.+.+||++|++.+..++..++++++++++|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv 80 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV 80 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence 589999999999999999999998888788999988877777777 7789999999999999999999999999999999
Q ss_pred EECCCHHHHHHHHHHHHHHHHhC----CCCCeEEEEEeCCCCcCCcCCCccc
Q 032487 90 YDITNQASFERAKKWVQELQAQG----NPNMVMALAGNKADLLDARKVTAEA 137 (139)
Q Consensus 90 ~~~~~~~s~~~~~~~~~~~~~~~----~~~~p~ivv~~k~D~~~~~~v~~~e 137 (139)
||++++.+|+.+..|+..+.... ....|+++|+||+|+.+.+.++.++
T Consensus 81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~ 132 (201)
T cd04107 81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQ 132 (201)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHH
Confidence 99999999999999998887532 3578999999999998655555443
No 26
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.97 E-value=1.2e-29 Score=166.72 Aligned_cols=120 Identities=33% Similarity=0.557 Sum_probs=106.2
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEEEE
Q 032487 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAII 88 (139)
Q Consensus 9 ~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 88 (139)
..+||+++|++++|||||+.++..+.+...+.++.+..+ ...+.+++..+.+.+|||+|++.+..++..+++++|++++
T Consensus 2 ~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~il 80 (191)
T cd01875 2 QSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNY-SAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFII 80 (191)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeee-EEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEE
Confidence 458999999999999999999999998877888888654 4445678888999999999999999999999999999999
Q ss_pred EEECCCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEeCCCCcCC
Q 032487 89 VYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLLDA 130 (139)
Q Consensus 89 v~~~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~~k~D~~~~ 130 (139)
|||++++.||+.++ .|+..+.... .+.|+++|+||+|+.+.
T Consensus 81 vydit~~~Sf~~~~~~w~~~i~~~~-~~~piilvgNK~DL~~~ 122 (191)
T cd01875 81 CFSIASPSSYENVRHKWHPEVCHHC-PNVPILLVGTKKDLRND 122 (191)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEeChhhhcC
Confidence 99999999999997 6988887653 57999999999999765
No 27
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.97 E-value=1.3e-29 Score=162.85 Aligned_cols=128 Identities=46% Similarity=0.768 Sum_probs=114.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEEEEE
Q 032487 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIV 89 (139)
Q Consensus 10 ~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v 89 (139)
.+||+++|++|||||||++++....+...+.++.+.++....+..++..+.+.+||++|++.+...+..+++++|++++|
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v 81 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 81 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence 47999999999999999999999888777778888887778888888788999999999999988888999999999999
Q ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCCcCCCccc
Q 032487 90 YDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEA 137 (139)
Q Consensus 90 ~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~~~v~~~e 137 (139)
||++++++|..+..|+..+......+.|+++++||+|+.+.+.+..++
T Consensus 82 ~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~ 129 (166)
T cd01869 82 YDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSE 129 (166)
T ss_pred EECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHH
Confidence 999999999999999999988755678999999999998776665543
No 28
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.97 E-value=1.3e-29 Score=164.08 Aligned_cols=128 Identities=30% Similarity=0.569 Sum_probs=111.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEEEEE
Q 032487 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIV 89 (139)
Q Consensus 10 ~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v 89 (139)
.+||+++|.+|+|||||++++..+.+...+.++.+..+ ...+..++..+.+.+||++|++.+..++..++..+|++++|
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv 80 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAY-KQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIIC 80 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceE-EEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEE
Confidence 47999999999999999999999998877778877544 44567778788999999999999999999999999999999
Q ss_pred EECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCCCCcCCcCCCcccc
Q 032487 90 YDITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARKVTAEAS 138 (139)
Q Consensus 90 ~~~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~~k~D~~~~~~v~~~e~ 138 (139)
||++++.+|+.+..|...+.... ..+.|+++|+||+|+.+.++++.+++
T Consensus 81 ~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~ 130 (172)
T cd04141 81 YSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEG 130 (172)
T ss_pred EECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHH
Confidence 99999999999999988887743 35799999999999988777776553
No 29
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.97 E-value=2.3e-29 Score=160.91 Aligned_cols=127 Identities=48% Similarity=0.808 Sum_probs=113.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEEEEEE
Q 032487 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY 90 (139)
Q Consensus 11 ~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~ 90 (139)
+||+++|++++|||||++++.+..+...+.++.+.++....+.+++..+.+.+||++|++.+...+..+++++|++++||
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence 58999999999999999999999888778888888787777888887889999999999999988899999999999999
Q ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCCcCCCccc
Q 032487 91 DITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEA 137 (139)
Q Consensus 91 ~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~~~v~~~e 137 (139)
|++++.++..+..|+..+.....++.|+++++||+|+.+.+.++.++
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~ 127 (161)
T cd04113 81 DITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREVTFLE 127 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCHHH
Confidence 99999999999999999887766789999999999998766665544
No 30
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.97 E-value=2.8e-29 Score=168.68 Aligned_cols=120 Identities=28% Similarity=0.553 Sum_probs=107.6
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEEE
Q 032487 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (139)
Q Consensus 8 ~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 87 (139)
-..+||+++|+++||||||+++|....+...+.++.+..+ ...+..++..+.+.+|||+|++.+..++..++.++|+++
T Consensus 11 ~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~-~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vI 89 (232)
T cd04174 11 VMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVL 89 (232)
T ss_pred eeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeee-EEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEE
Confidence 4678999999999999999999999999888888888665 445777888899999999999999999999999999999
Q ss_pred EEEECCCHHHHHH-HHHHHHHHHHhCCCCCeEEEEEeCCCCcC
Q 032487 88 IVYDITNQASFER-AKKWVQELQAQGNPNMVMALAGNKADLLD 129 (139)
Q Consensus 88 ~v~~~~~~~s~~~-~~~~~~~~~~~~~~~~p~ivv~~k~D~~~ 129 (139)
+|||++++.+|+. +..|+..+.... +..|+++|+||+|+.+
T Consensus 90 lVyDit~~~Sf~~~~~~w~~~i~~~~-~~~piilVgNK~DL~~ 131 (232)
T cd04174 90 LCFDISRPETVDSALKKWKAEIMDYC-PSTRILLIGCKTDLRT 131 (232)
T ss_pred EEEECCChHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccccc
Confidence 9999999999998 589999998764 5789999999999965
No 31
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.97 E-value=2.6e-29 Score=161.23 Aligned_cols=126 Identities=29% Similarity=0.638 Sum_probs=112.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEEEEEE
Q 032487 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY 90 (139)
Q Consensus 11 ~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~ 90 (139)
+||+++|++|+|||||++++++..+...+.++.+.++....+..++..+.+.+||++|++.+...+..+++.+|++++||
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY 80 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence 58999999999999999999999988888889988888888888888899999999999999888889999999999999
Q ss_pred ECCCHHHHHHHHHHHHHHHHhCC-----CCCeEEEEEeCCCCcCCcCCCcc
Q 032487 91 DITNQASFERAKKWVQELQAQGN-----PNMVMALAGNKADLLDARKVTAE 136 (139)
Q Consensus 91 ~~~~~~s~~~~~~~~~~~~~~~~-----~~~p~ivv~~k~D~~~~~~v~~~ 136 (139)
|.+++.+++.+..|+..+..... ...|+++|+||+|+.+.+.++.+
T Consensus 81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~ 131 (168)
T cd04119 81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSED 131 (168)
T ss_pred ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHH
Confidence 99999999999999999987543 47899999999999765545444
No 32
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.97 E-value=3.5e-29 Score=160.67 Aligned_cols=128 Identities=45% Similarity=0.820 Sum_probs=114.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEEEEE
Q 032487 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIV 89 (139)
Q Consensus 10 ~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v 89 (139)
.+||+++|+++||||||++++.+.++...+.++.+.++....+..++....+.+||++|++.+...+..++++++++++|
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v 82 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLV 82 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEEE
Confidence 47999999999999999999999988777788888888888888888778999999999999998889999999999999
Q ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCCcCCCccc
Q 032487 90 YDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEA 137 (139)
Q Consensus 90 ~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~~~v~~~e 137 (139)
||+.++.+++.+.+|+..+......+.|+++|+||+|+.+.+++..++
T Consensus 83 ~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~ 130 (165)
T cd01868 83 YDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEE 130 (165)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccccCCHHH
Confidence 999999999999999999988765679999999999998776665443
No 33
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.97 E-value=3.6e-29 Score=161.29 Aligned_cols=129 Identities=40% Similarity=0.753 Sum_probs=114.6
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEEEE
Q 032487 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAII 88 (139)
Q Consensus 9 ~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 88 (139)
..+||+++|.+|+|||||++++.+..+...+.++.+.++....+..++....+.+||++|++.+...+..+++.+|++++
T Consensus 3 ~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~ 82 (168)
T cd01866 3 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALL 82 (168)
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEE
Confidence 34899999999999999999999998877777888888878888888878899999999999998888889999999999
Q ss_pred EEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCCcCCCccc
Q 032487 89 VYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEA 137 (139)
Q Consensus 89 v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~~~v~~~e 137 (139)
|||++++.+++.+..|+..+.....+..|+++|+||.|+.+.+.++.++
T Consensus 83 v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~ 131 (168)
T cd01866 83 VYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEE 131 (168)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHH
Confidence 9999999999999999999988655789999999999998766665543
No 34
>PLN03110 Rab GTPase; Provisional
Probab=99.97 E-value=5.2e-29 Score=166.47 Aligned_cols=131 Identities=45% Similarity=0.806 Sum_probs=117.9
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEE
Q 032487 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 86 (139)
Q Consensus 7 ~~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 86 (139)
....+||+++|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||++|++.+...+..++++++++
T Consensus 9 ~~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~ 88 (216)
T PLN03110 9 YDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGA 88 (216)
T ss_pred cCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEE
Confidence 34678999999999999999999999888777788999888888888888888999999999999999999999999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCCcCCCccc
Q 032487 87 IIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEA 137 (139)
Q Consensus 87 i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~~~v~~~e 137 (139)
++|||++++.+|+.+..|+..+......+.|+++|+||+|+.+.+.++.++
T Consensus 89 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~ 139 (216)
T PLN03110 89 LLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEED 139 (216)
T ss_pred EEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCHHH
Confidence 999999999999999999999988766789999999999998777666543
No 35
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.97 E-value=3.9e-29 Score=162.55 Aligned_cols=129 Identities=35% Similarity=0.658 Sum_probs=112.2
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEEC----------CcEEEEEEEeCCCcccccccchh
Q 032487 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVN----------DATVKFEIWDTAGQERYHSLAPM 78 (139)
Q Consensus 9 ~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~i~d~~g~~~~~~~~~~ 78 (139)
..+||+++|++|||||||++++..+.+...+.++.+.++....+.+. +..+.+.+||++|++.+...+..
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 82 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTA 82 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHH
Confidence 56899999999999999999999999888888888877766665553 45688999999999999999999
Q ss_pred hhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCCCCcCCcCCCccc
Q 032487 79 YYRGAAAAIIVYDITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARKVTAEA 137 (139)
Q Consensus 79 ~~~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~~k~D~~~~~~v~~~e 137 (139)
+++++|++++|||++++.+|..++.|+..+.... ..+.|+++|+||+|+.+.+.++.++
T Consensus 83 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~ 142 (180)
T cd04127 83 FFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQ 142 (180)
T ss_pred HhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHH
Confidence 9999999999999999999999999999988753 3578999999999998877666544
No 36
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.97 E-value=5.5e-29 Score=163.10 Aligned_cols=127 Identities=42% Similarity=0.752 Sum_probs=113.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEEEEEE
Q 032487 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY 90 (139)
Q Consensus 11 ~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~ 90 (139)
+||+++|++|+|||||++++.+..+...+.++.+.++....+..++..+.+.+||++|++.+...+..+++++|++++||
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~ 80 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY 80 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence 58999999999999999999999887767888888877777888877889999999999999989999999999999999
Q ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCCcCCCccc
Q 032487 91 DITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEA 137 (139)
Q Consensus 91 ~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~~~v~~~e 137 (139)
|.+++.+|+.+..|+..+........|+++++||+|+.+.+.++.++
T Consensus 81 d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~ 127 (188)
T cd04125 81 DVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNI 127 (188)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHH
Confidence 99999999999999999988755678999999999998776665443
No 37
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.97 E-value=4.7e-29 Score=161.81 Aligned_cols=118 Identities=29% Similarity=0.536 Sum_probs=103.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEEEEEE
Q 032487 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY 90 (139)
Q Consensus 11 ~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~ 90 (139)
+||+++|++|+|||||++++..+.+...+.++.+..+. ..+..++..+++++||++|++.+..++..+++++|++++||
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~ 80 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF 80 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeE-EEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEE
Confidence 69999999999999999999999887778888876553 44567777899999999999999999989999999999999
Q ss_pred ECCCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEeCCCCcCC
Q 032487 91 DITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLLDA 130 (139)
Q Consensus 91 ~~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~~k~D~~~~ 130 (139)
|++++.+|+.+. .|+..+.... .+.|+++|+||+|+.+.
T Consensus 81 d~~~~~s~~~~~~~w~~~i~~~~-~~~piilvgnK~Dl~~~ 120 (175)
T cd01874 81 SVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 120 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEECHhhhhC
Confidence 999999999986 5988887753 57899999999998654
No 38
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.97 E-value=8.1e-29 Score=159.74 Aligned_cols=129 Identities=36% Similarity=0.649 Sum_probs=112.1
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEE
Q 032487 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 86 (139)
Q Consensus 7 ~~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 86 (139)
++..+||+++|++++|||||++++....+.+.+.++.+.++....+..++..+.+.+||++|++.+...+..+++++|++
T Consensus 2 ~~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ 81 (170)
T cd04116 2 KSSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCC 81 (170)
T ss_pred CceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEE
Confidence 45679999999999999999999999888877778888877777778888889999999999999999999999999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHhC----CCCCeEEEEEeCCCCcCCcCCCcc
Q 032487 87 IIVYDITNQASFERAKKWVQELQAQG----NPNMVMALAGNKADLLDARKVTAE 136 (139)
Q Consensus 87 i~v~~~~~~~s~~~~~~~~~~~~~~~----~~~~p~ivv~~k~D~~~~~~v~~~ 136 (139)
++|||++++.+++.+..|...+.... ..+.|+++|+||+|+. .+.++.+
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~ 134 (170)
T cd04116 82 LLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIP-ERQVSTE 134 (170)
T ss_pred EEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccc-ccccCHH
Confidence 99999999999999999998876643 2468999999999986 3334433
No 39
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.97 E-value=7.2e-29 Score=161.86 Aligned_cols=118 Identities=30% Similarity=0.627 Sum_probs=107.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEEEEEE
Q 032487 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY 90 (139)
Q Consensus 11 ~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~ 90 (139)
+||+++|+.++|||||++++..+.+...+.++.+.++..+.+..++..+.+.+||++|++.+...+..+++++|++++||
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~ 80 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF 80 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence 58999999999999999999999888888899998888888888888899999999999999999999999999999999
Q ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcC
Q 032487 91 DITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLD 129 (139)
Q Consensus 91 ~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~ 129 (139)
|++++.+|+.+..|+..+........| ++|+||+|+..
T Consensus 81 D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~ 118 (182)
T cd04128 81 DLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFA 118 (182)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccc
Confidence 999999999999999999876555667 67899999853
No 40
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.97 E-value=4.5e-29 Score=159.69 Aligned_cols=126 Identities=35% Similarity=0.590 Sum_probs=107.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEEEEE
Q 032487 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIV 89 (139)
Q Consensus 10 ~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v 89 (139)
.+||+++|++|+|||||++++....+...+.++.+ ..+...+.+++..+.+.+||++|++.+..++..++++++++++|
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 79 (163)
T cd04136 1 EYKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLV 79 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEE
Confidence 37999999999999999999999887766666665 34456667788788999999999999999999999999999999
Q ss_pred EECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCCCCcCCcCCCcc
Q 032487 90 YDITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARKVTAE 136 (139)
Q Consensus 90 ~~~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~~k~D~~~~~~v~~~ 136 (139)
||++++.+|+.+..|+..+.... ..+.|+++|+||+|+.+.++++.+
T Consensus 80 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~ 127 (163)
T cd04136 80 YSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSRE 127 (163)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHH
Confidence 99999999999999999887753 357899999999999776555543
No 41
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.97 E-value=9.2e-29 Score=163.45 Aligned_cols=129 Identities=42% Similarity=0.726 Sum_probs=113.6
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEEE
Q 032487 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (139)
Q Consensus 8 ~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 87 (139)
...+||+++|++|+|||||+++|.+..+...+.++.+.++....+..++....+.+||++|++.+...+..++.++++++
T Consensus 4 ~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~ii 83 (199)
T cd04110 4 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVI 83 (199)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEE
Confidence 34789999999999999999999998887777888887777777777777789999999999999999999999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCCcCCCccc
Q 032487 88 IVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEA 137 (139)
Q Consensus 88 ~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~~~v~~~e 137 (139)
+|||++++.+|+.+..|+..+... ....|+++|+||+|+.+.+.++.++
T Consensus 84 lv~D~~~~~s~~~~~~~~~~i~~~-~~~~piivVgNK~Dl~~~~~~~~~~ 132 (199)
T cd04110 84 VVYDVTNGESFVNVKRWLQEIEQN-CDDVCKVLVGNKNDDPERKVVETED 132 (199)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHh-CCCCCEEEEEECcccccccccCHHH
Confidence 999999999999999999998776 3578999999999998776665443
No 42
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.97 E-value=1.1e-28 Score=159.38 Aligned_cols=121 Identities=36% Similarity=0.696 Sum_probs=108.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEEEEEEE
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYD 91 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~~ 91 (139)
||+++|.+|||||||++++..+.+...+.++.+.++....+..++....+++||++|++.+...+..+++++|++++|||
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 81 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD 81 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence 89999999999999999999999988888999988887888888888899999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEeCCCCcCCcC
Q 032487 92 ITNQASFERAKKWVQELQAQ-GNPNMVMALAGNKADLLDARK 132 (139)
Q Consensus 92 ~~~~~s~~~~~~~~~~~~~~-~~~~~p~ivv~~k~D~~~~~~ 132 (139)
++++.+++.+..|+..+... .....|+++|+||+|+.+.++
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~ 123 (170)
T cd04108 82 LTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQ 123 (170)
T ss_pred CcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCcccc
Confidence 99999999999999987654 334678999999999966543
No 43
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.97 E-value=9.6e-29 Score=158.08 Aligned_cols=126 Identities=38% Similarity=0.713 Sum_probs=111.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEEC--CcEEEEEEEeCCCcccccccchhhhcCCCEEEE
Q 032487 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVN--DATVKFEIWDTAGQERYHSLAPMYYRGAAAAII 88 (139)
Q Consensus 11 ~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 88 (139)
+||+++|++++|||||++++.++.+...+.++.+.++....+.++ +..+.+++||+||++.+...+..+++++|++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~ 80 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence 489999999999999999999988877778888887766666666 667899999999999999999999999999999
Q ss_pred EEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCCcCCCccc
Q 032487 89 VYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEA 137 (139)
Q Consensus 89 v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~~~v~~~e 137 (139)
|||++++.+++.+..|+..+... ..+.|+++|+||+|+...+.++.++
T Consensus 81 v~d~~~~~s~~~l~~~~~~~~~~-~~~~p~iiv~nK~Dl~~~~~v~~~~ 128 (162)
T cd04106 81 VFSTTDRESFEAIESWKEKVEAE-CGDIPMVLVQTKIDLLDQAVITNEE 128 (162)
T ss_pred EEECCCHHHHHHHHHHHHHHHHh-CCCCCEEEEEEChhcccccCCCHHH
Confidence 99999999999999999998765 3579999999999998776666544
No 44
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.96 E-value=1.1e-28 Score=164.86 Aligned_cols=127 Identities=35% Similarity=0.570 Sum_probs=112.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECC-cEEEEEEEeCCCcccccccchhhhcCCCEEEEE
Q 032487 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVND-ATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIV 89 (139)
Q Consensus 11 ~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v 89 (139)
+||+++|++|+|||||+++|.+..+...+.++.+.+++...+..++ ..+.+.+||++|++.+...+..+++++|++++|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV 80 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV 80 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence 5899999999999999999999988888889999888888887754 578999999999999999999999999999999
Q ss_pred EECCCHHHHHHHHHHHHHHHHhCC---CCCeEEEEEeCCCCcCCcCCCccc
Q 032487 90 YDITNQASFERAKKWVQELQAQGN---PNMVMALAGNKADLLDARKVTAEA 137 (139)
Q Consensus 90 ~~~~~~~s~~~~~~~~~~~~~~~~---~~~p~ivv~~k~D~~~~~~v~~~e 137 (139)
||++++.+|+.+..|+..+..... ...|+++|+||+|+.+.++++.++
T Consensus 81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~ 131 (215)
T cd04109 81 YDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDK 131 (215)
T ss_pred EECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHH
Confidence 999999999999999999987532 356899999999998776666543
No 45
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.96 E-value=1.1e-28 Score=159.28 Aligned_cols=128 Identities=38% Similarity=0.695 Sum_probs=112.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCccccc-ccchhhhcCCCEEEE
Q 032487 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYH-SLAPMYYRGAAAAII 88 (139)
Q Consensus 10 ~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~-~~~~~~~~~~~~~i~ 88 (139)
.+||+++|++|+|||||++++....+...+.++.+.++....+..++..+.+.+||++|++.+. .++..+++++|++++
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~ 81 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF 81 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence 5799999999999999999999988887778888888877788888888999999999998886 467888999999999
Q ss_pred EEECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCCCCcCCcCCCccc
Q 032487 89 VYDITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARKVTAEA 137 (139)
Q Consensus 89 v~~~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~~k~D~~~~~~v~~~e 137 (139)
|||++++.+|..+..|+..+.... ....|+++|+||+|+.+.++++.++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~ 131 (170)
T cd04115 82 VYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDL 131 (170)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHH
Confidence 999999999999999999988753 3679999999999998877776543
No 46
>PTZ00369 Ras-like protein; Provisional
Probab=99.96 E-value=1.1e-28 Score=161.79 Aligned_cols=128 Identities=32% Similarity=0.561 Sum_probs=110.9
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEEE
Q 032487 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (139)
Q Consensus 8 ~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 87 (139)
+..+||+++|++|+|||||++++....+...+.++.+..+ .+.+.+++..+.+.+|||+|++.+..++..+++.+++++
T Consensus 3 ~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~ii 81 (189)
T PTZ00369 3 STEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFL 81 (189)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEE
Confidence 4579999999999999999999999888776777776554 556677887889999999999999999999999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCCCCcCCcCCCcc
Q 032487 88 IVYDITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARKVTAE 136 (139)
Q Consensus 88 ~v~~~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~~k~D~~~~~~v~~~ 136 (139)
+|||++++.+|+.+..|...+.... ..+.|+++|+||+|+.+.+.++.+
T Consensus 82 lv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~ 131 (189)
T PTZ00369 82 CVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTG 131 (189)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHH
Confidence 9999999999999999999887653 357899999999999776666543
No 47
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.96 E-value=1.7e-28 Score=164.22 Aligned_cols=122 Identities=34% Similarity=0.597 Sum_probs=111.2
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEE
Q 032487 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 86 (139)
Q Consensus 7 ~~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 86 (139)
+...+||+++|.+|||||||++++..+.+...+.++.+.++....+..++..+.+.+||++|++.+..++..++++++++
T Consensus 10 ~~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ 89 (219)
T PLN03071 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (219)
T ss_pred CCCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEE
Confidence 47789999999999999999999999988888889999888777777777779999999999999999999999999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcC
Q 032487 87 IIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLD 129 (139)
Q Consensus 87 i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~ 129 (139)
++|||++++.+|+.++.|+..+.... .+.|+++|+||+|+.+
T Consensus 90 ilvfD~~~~~s~~~i~~w~~~i~~~~-~~~piilvgNK~Dl~~ 131 (219)
T PLN03071 90 IIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN 131 (219)
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhC-CCCcEEEEEEchhhhh
Confidence 99999999999999999999998763 5799999999999864
No 48
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.96 E-value=2.3e-28 Score=156.14 Aligned_cols=126 Identities=44% Similarity=0.824 Sum_probs=111.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEEEEEE
Q 032487 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY 90 (139)
Q Consensus 11 ~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~ 90 (139)
+||+++|++++|||||++++.+..+...+.++.+.++....+..++...++.+||+||++.+...+..+++.+|++++||
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 80 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 48999999999999999999999887777888888888888888877788999999999999888889999999999999
Q ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCCcCCCcc
Q 032487 91 DITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAE 136 (139)
Q Consensus 91 ~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~~~v~~~ 136 (139)
|++++.+|+.+..|+..+......+.|+++++||+|+.+.+++..+
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~ 126 (161)
T cd01861 81 DITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTE 126 (161)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHH
Confidence 9999999999999999987754457999999999999766555544
No 49
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.96 E-value=1.6e-28 Score=161.28 Aligned_cols=126 Identities=43% Similarity=0.781 Sum_probs=109.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCc-ccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEEEEE
Q 032487 11 AKLVLLGDVGAGKSSLVLRFVKGQFIE-FQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIV 89 (139)
Q Consensus 11 ~ki~i~G~~~~GKssli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v 89 (139)
+||+++|++|+|||||++++....+.. .+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++++|
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 80 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL 80 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence 589999999999999999999888753 4667777777666677888889999999999999988888899999999999
Q ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCCcCCCcc
Q 032487 90 YDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAE 136 (139)
Q Consensus 90 ~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~~~v~~~ 136 (139)
||++++.+|+.+..|+..+........|+++|+||+|+...+.++.+
T Consensus 81 ~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~ 127 (191)
T cd04112 81 YDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKRE 127 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHH
Confidence 99999999999999999998876668999999999999766655543
No 50
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.96 E-value=1.9e-28 Score=157.00 Aligned_cols=125 Identities=34% Similarity=0.596 Sum_probs=107.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEEEEE
Q 032487 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIV 89 (139)
Q Consensus 10 ~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v 89 (139)
++||+++|.+|+|||||++++..+.+...+.++.+ .++...+..++....+++||++|++.+..++..+++++|++++|
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 79 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVV 79 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEE
Confidence 47999999999999999999999888776666664 45566677777778899999999999999999999999999999
Q ss_pred EECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCCCCcCCcCCCc
Q 032487 90 YDITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARKVTA 135 (139)
Q Consensus 90 ~~~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~~k~D~~~~~~v~~ 135 (139)
||+.++.+|+.+..|...+.... ..+.|+++|+||+|+.+.+.++.
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~ 126 (163)
T cd04176 80 YSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSS 126 (163)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCH
Confidence 99999999999999998887753 36799999999999976555544
No 51
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.96 E-value=1.6e-28 Score=164.25 Aligned_cols=119 Identities=27% Similarity=0.561 Sum_probs=104.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEEEEE
Q 032487 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIV 89 (139)
Q Consensus 10 ~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v 89 (139)
++||+++|++|||||||+++|....+...+.++.+..+ ...+.+++..+.+.+|||+|++.+..+++.++.++|++++|
T Consensus 1 ~~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~-~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illv 79 (222)
T cd04173 1 RCKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENY-TASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLIC 79 (222)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccce-EEEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEE
Confidence 47999999999999999999999998888888887655 35667788889999999999999999999999999999999
Q ss_pred EECCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEeCCCCcCC
Q 032487 90 YDITNQASFERA-KKWVQELQAQGNPNMVMALAGNKADLLDA 130 (139)
Q Consensus 90 ~~~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~~k~D~~~~ 130 (139)
||++++.+|+.+ ..|...+... .++.|+++|+||+|+.+.
T Consensus 80 fdis~~~Sf~~i~~~w~~~~~~~-~~~~piiLVgnK~DL~~~ 120 (222)
T cd04173 80 FDISRPETLDSVLKKWQGETQEF-CPNAKVVLVGCKLDMRTD 120 (222)
T ss_pred EECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEEECcccccc
Confidence 999999999998 5687776654 467999999999999653
No 52
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.96 E-value=3.5e-28 Score=155.63 Aligned_cols=127 Identities=70% Similarity=1.076 Sum_probs=112.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEEEEE
Q 032487 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIV 89 (139)
Q Consensus 10 ~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v 89 (139)
.+||+++|++++|||||++++.+..+...+.++.+..+....+.+++..+.+.+||++|++.+...+..+++++|++++|
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 80 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence 47999999999999999999999988776778888777788888888889999999999999988888899999999999
Q ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCCcCCCcc
Q 032487 90 YDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAE 136 (139)
Q Consensus 90 ~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~~~v~~~ 136 (139)
+|++++.+++.+..|+..+........|+++++||+|+.+.+.++.+
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~ 127 (163)
T cd01860 81 YDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTE 127 (163)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCHH
Confidence 99999999999999999998875578999999999998865554443
No 53
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.96 E-value=4.7e-28 Score=155.90 Aligned_cols=118 Identities=36% Similarity=0.692 Sum_probs=106.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEEEEEE
Q 032487 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY 90 (139)
Q Consensus 11 ~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~ 90 (139)
+||+++|++|||||||++++....+...+.++.+.++....+..++..+.+.+||++|++.+...+..++..+|++++||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence 58999999999999999999988877777888887776666666777899999999999999888888999999999999
Q ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcC
Q 032487 91 DITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLD 129 (139)
Q Consensus 91 ~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~ 129 (139)
|++++.+++.++.|+..+..... +.|+++|+||+|+.+
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~-~~piiiv~nK~Dl~~ 118 (166)
T cd00877 81 DVTSRVTYKNVPNWHRDLVRVCG-NIPIVLCGNKVDIKD 118 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC-CCcEEEEEEchhccc
Confidence 99999999999999999988743 899999999999974
No 54
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.96 E-value=3e-28 Score=162.30 Aligned_cols=128 Identities=40% Similarity=0.772 Sum_probs=112.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEE-CCcEEEEEEEeCCCcccccccchhhhcCCCEEEE
Q 032487 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAV-NDATVKFEIWDTAGQERYHSLAPMYYRGAAAAII 88 (139)
Q Consensus 10 ~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 88 (139)
.+||+++|++|+|||||+++|.+..+...+.++.+.++....+.. ++..+.+++||++|++.+...+..++.++|++++
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil 81 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL 81 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence 589999999999999999999998888777888888887777776 4567899999999999999998999999999999
Q ss_pred EEECCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEeCCCCcCCcCCCccc
Q 032487 89 VYDITNQASFERAKKWVQELQAQGN-PNMVMALAGNKADLLDARKVTAEA 137 (139)
Q Consensus 89 v~~~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~~k~D~~~~~~v~~~e 137 (139)
|||++++.+|+.+..|+..+..... ...|+++|+||+|+.+.+.++.++
T Consensus 82 v~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~ 131 (211)
T cd04111 82 VFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREE 131 (211)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHH
Confidence 9999999999999999999877533 467899999999998876666544
No 55
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.96 E-value=2.7e-28 Score=156.47 Aligned_cols=126 Identities=34% Similarity=0.587 Sum_probs=107.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEEEEE
Q 032487 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIV 89 (139)
Q Consensus 10 ~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v 89 (139)
++||+++|.+|+|||||++++..+.+...+.++.+..+ ...+..++..+.+.+||++|++.+..++..+++++|++++|
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv 79 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLV 79 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEE
Confidence 47999999999999999999998877666667776544 45567777788999999999999999999999999999999
Q ss_pred EECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCCCCcCCcCCCcc
Q 032487 90 YDITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARKVTAE 136 (139)
Q Consensus 90 ~~~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~~k~D~~~~~~v~~~ 136 (139)
||.+++.+|+.+..|+..+.... ..+.|+++++||+|+.+.+.++.+
T Consensus 80 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~ 127 (164)
T cd04175 80 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKE 127 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHH
Confidence 99999999999999999987642 467999999999999876555443
No 56
>PLN00023 GTP-binding protein; Provisional
Probab=99.96 E-value=4e-28 Score=168.08 Aligned_cols=124 Identities=30% Similarity=0.506 Sum_probs=109.8
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECC-------------cEEEEEEEeCCCccccc
Q 032487 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVND-------------ATVKFEIWDTAGQERYH 73 (139)
Q Consensus 7 ~~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~i~d~~g~~~~~ 73 (139)
....+||+++|+.|||||||+++|....+...+.+++|.++..+.+.+++ ..+.++|||++|++.+.
T Consensus 18 ~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfr 97 (334)
T PLN00023 18 PCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYK 97 (334)
T ss_pred CccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhh
Confidence 45679999999999999999999999988877889999888777776642 46889999999999999
Q ss_pred ccchhhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC------------CCCeEEEEEeCCCCcCC
Q 032487 74 SLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGN------------PNMVMALAGNKADLLDA 130 (139)
Q Consensus 74 ~~~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~------------~~~p~ivv~~k~D~~~~ 130 (139)
.++..++++++++|+|||++++.+|+.+..|+..+..... ..+|++||+||+|+.+.
T Consensus 98 sL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~ 166 (334)
T PLN00023 98 DCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPK 166 (334)
T ss_pred hhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccccc
Confidence 9999999999999999999999999999999999987531 25899999999999765
No 57
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.96 E-value=4.8e-28 Score=154.99 Aligned_cols=126 Identities=52% Similarity=0.908 Sum_probs=111.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEEEEEE
Q 032487 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY 90 (139)
Q Consensus 11 ~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~ 90 (139)
+||+++|++++|||||++++.+..+...+.++.+.++....+..++...++.+||+||++.+...+..++..+|++++||
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence 58999999999999999999998887777788888777777788887789999999999999988899999999999999
Q ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCCcCCCcc
Q 032487 91 DITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAE 136 (139)
Q Consensus 91 ~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~~~v~~~ 136 (139)
|.+++.+++.+..|+..+........|+++++||+|+...+++..+
T Consensus 81 d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~ 126 (164)
T smart00175 81 DITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSRE 126 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHH
Confidence 9999999999999999988875578999999999998775554433
No 58
>PLN03108 Rab family protein; Provisional
Probab=99.96 E-value=4.9e-28 Score=161.16 Aligned_cols=129 Identities=40% Similarity=0.765 Sum_probs=115.4
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEEEE
Q 032487 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAII 88 (139)
Q Consensus 9 ~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 88 (139)
..+||+++|++++|||||+++|....+...+.++.+.++....+.+++..+.+.+||++|++.+...+..++..+|++++
T Consensus 5 ~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~vl 84 (210)
T PLN03108 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALL 84 (210)
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEE
Confidence 46999999999999999999999988877778888888888888888888899999999999998888899999999999
Q ss_pred EEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCCcCCCccc
Q 032487 89 VYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEA 137 (139)
Q Consensus 89 v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~~~v~~~e 137 (139)
|||++++.+|+.+..|+..+........|+++++||+|+.+.+.++.++
T Consensus 85 v~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~ 133 (210)
T PLN03108 85 VYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEE 133 (210)
T ss_pred EEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCCHHH
Confidence 9999999999999999998877655789999999999998877676554
No 59
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.96 E-value=4.6e-28 Score=157.05 Aligned_cols=118 Identities=33% Similarity=0.587 Sum_probs=102.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEEEEEE
Q 032487 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY 90 (139)
Q Consensus 11 ~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~ 90 (139)
+||+++|++|||||||+.++..+.+...+.++.+. .+...+..++..+.+.+|||+|++.+..++..+++++|++++||
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFD-NYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF 80 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCccee-eeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence 69999999999999999999998887777777754 34455667777899999999999999999999999999999999
Q ss_pred ECCCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEeCCCCcCC
Q 032487 91 DITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLLDA 130 (139)
Q Consensus 91 ~~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~~k~D~~~~ 130 (139)
|++++++|+.+. .|+..+... ..+.|+++|+||+|+.+.
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~-~~~~piilvgnK~Dl~~~ 120 (174)
T cd01871 81 SLVSPASFENVRAKWYPEVRHH-CPNTPIILVGTKLDLRDD 120 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHHh-CCCCCEEEEeeChhhccC
Confidence 999999999985 698888765 357999999999999653
No 60
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.96 E-value=8e-28 Score=154.07 Aligned_cols=118 Identities=35% Similarity=0.632 Sum_probs=105.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEEEEEE
Q 032487 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY 90 (139)
Q Consensus 11 ~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~ 90 (139)
+||+++|++|||||||++++....+.+.+.++.+.+........++..+.+.+|||+|++.+...+..+++++|++++||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence 58999999999999999999998887777777777766666777787899999999999999999999999999999999
Q ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcC
Q 032487 91 DITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLD 129 (139)
Q Consensus 91 ~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~ 129 (139)
|++++.+++.++.|+..+... ....|+++|+||+|+..
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~-~~~~p~ivv~nK~Dl~~ 118 (161)
T cd04124 81 DVTRKITYKNLSKWYEELREY-RPEIPCIVVANKIDLDP 118 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHh-CCCCcEEEEEECccCch
Confidence 999999999999999999765 35789999999999853
No 61
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.96 E-value=2.4e-28 Score=160.37 Aligned_cols=125 Identities=33% Similarity=0.604 Sum_probs=106.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEEEEEEE
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYD 91 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~~ 91 (139)
||+++|.+|+|||||+++|..+.+...+.++.+..+ ......++..+.+++||++|++.+...+..+++++|++++|||
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 79 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSY-RKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYS 79 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEE
Confidence 689999999999999999998888776777776443 4455667777889999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhC---CCCCeEEEEEeCCCCcCCcCCCccc
Q 032487 92 ITNQASFERAKKWVQELQAQG---NPNMVMALAGNKADLLDARKVTAEA 137 (139)
Q Consensus 92 ~~~~~s~~~~~~~~~~~~~~~---~~~~p~ivv~~k~D~~~~~~v~~~e 137 (139)
++++.+|+.+..|+..+.... ..+.|+++|+||+|+.+.+.++.++
T Consensus 80 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~ 128 (190)
T cd04144 80 ITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEE 128 (190)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHH
Confidence 999999999999999887653 2578999999999998776666543
No 62
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.96 E-value=9.8e-28 Score=154.15 Aligned_cols=125 Identities=31% Similarity=0.469 Sum_probs=105.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEEEEEE
Q 032487 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY 90 (139)
Q Consensus 11 ~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~ 90 (139)
+||+++|++|+|||||++++.++.+...+.++.+..+ ......+.....+.+||++|++.+..++..++..++++++||
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY 80 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheE-EEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEE
Confidence 7999999999999999999999888776667666443 444556667789999999999999888888899999999999
Q ss_pred ECCCHHHHHHHHHHHHHHHHhC---CCCCeEEEEEeCCCCcCCcCCCcc
Q 032487 91 DITNQASFERAKKWVQELQAQG---NPNMVMALAGNKADLLDARKVTAE 136 (139)
Q Consensus 91 ~~~~~~s~~~~~~~~~~~~~~~---~~~~p~ivv~~k~D~~~~~~v~~~ 136 (139)
|++++.+++.++.|+..+.... ..+.|+++|+||+|+.+.+.+..+
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~ 129 (165)
T cd04140 81 SVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSN 129 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHH
Confidence 9999999999999988877642 257899999999999776555544
No 63
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.96 E-value=6.3e-28 Score=163.87 Aligned_cols=126 Identities=26% Similarity=0.452 Sum_probs=107.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEEEEEE
Q 032487 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY 90 (139)
Q Consensus 11 ~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~ 90 (139)
+||+++|++|+|||||++++..+.+...+.++.+ ++....+.+++..+.+.+|||+|++.+..++..++..+|++++||
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVf 79 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVF 79 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEE
Confidence 5899999999999999999999888776777775 455667778888899999999999998888888889999999999
Q ss_pred ECCCHHHHHHHHHHHHHHHHh---------CCCCCeEEEEEeCCCCcCCcCCCccc
Q 032487 91 DITNQASFERAKKWVQELQAQ---------GNPNMVMALAGNKADLLDARKVTAEA 137 (139)
Q Consensus 91 ~~~~~~s~~~~~~~~~~~~~~---------~~~~~p~ivv~~k~D~~~~~~v~~~e 137 (139)
|++++++|+.+..|+..+... ...+.|+++|+||+|+.+.+++..++
T Consensus 80 dv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~e 135 (247)
T cd04143 80 SLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDE 135 (247)
T ss_pred eCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHH
Confidence 999999999999999888653 22578999999999998755555443
No 64
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.96 E-value=1.1e-27 Score=160.07 Aligned_cols=114 Identities=41% Similarity=0.736 Sum_probs=98.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEEEEEE
Q 032487 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY 90 (139)
Q Consensus 11 ~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~ 90 (139)
+||+++|.+++|||||+++|....+.. +.++.+..+..... ..+.+.+||++|++.+..++..+++++|++++||
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~~----~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~ 75 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQW----GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTY 75 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEEe----eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEE
Confidence 589999999999999999999988765 56777765544332 3578999999999999999999999999999999
Q ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcC
Q 032487 91 DITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLD 129 (139)
Q Consensus 91 ~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~ 129 (139)
|++++.+|+.+..|+..+........|+++|+||+|+.+
T Consensus 76 Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~ 114 (220)
T cd04126 76 DVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTE 114 (220)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc
Confidence 999999999999888887765556789999999999976
No 65
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.96 E-value=1.7e-27 Score=152.53 Aligned_cols=126 Identities=32% Similarity=0.559 Sum_probs=106.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEEEEE
Q 032487 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIV 89 (139)
Q Consensus 10 ~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v 89 (139)
.+||+++|++|+|||||++++.+..+...+.++.+.. .......++....+.+||+||++++..++..+++++|++++|
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 80 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDS-YTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLV 80 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccce-EEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEE
Confidence 4799999999999999999999888766666666543 344556777778999999999999999999999999999999
Q ss_pred EECCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEeCCCCcCCcCCCcc
Q 032487 90 YDITNQASFERAKKWVQELQAQ-GNPNMVMALAGNKADLLDARKVTAE 136 (139)
Q Consensus 90 ~~~~~~~s~~~~~~~~~~~~~~-~~~~~p~ivv~~k~D~~~~~~v~~~ 136 (139)
||++++.+++.+..|+..+.+. ...+.|+++++||+|+...+.++.+
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~ 128 (164)
T cd04145 81 FSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSRE 128 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHH
Confidence 9999999999999999988774 2357899999999999876655543
No 66
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.96 E-value=2.1e-27 Score=152.21 Aligned_cols=124 Identities=35% Similarity=0.592 Sum_probs=107.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC--CCCcccccceeeEEEEEEEEEC-CcEEEEEEEeCCCcccccccchhhhcCCCEEE
Q 032487 11 AKLVLLGDVGAGKSSLVLRFVKG--QFIEFQESTIGAAFFSQTLAVN-DATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (139)
Q Consensus 11 ~ki~i~G~~~~GKssli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 87 (139)
+||+++|++|||||||++++... .+...+.++.+.++....+..+ +....+.+||++|++.+..++..++.++|+++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 58999999999999999999864 5667788888888777776664 56689999999999999888889999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCCcCCCc
Q 032487 88 IVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTA 135 (139)
Q Consensus 88 ~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~~~v~~ 135 (139)
+|||++++.+++.+..|+..+.... ...|+++|+||+|+.+.+++..
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~ 127 (164)
T cd04101 81 LVYDVSNKASFENCSRWVNKVRTAS-KHMPGVLVGNKMDLADKAEVTD 127 (164)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccCCCH
Confidence 9999999999999999999988763 5689999999999977665554
No 67
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=99.96 E-value=5.5e-29 Score=154.62 Aligned_cols=130 Identities=40% Similarity=0.767 Sum_probs=119.0
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEE-CCcEEEEEEEeCCCcccccccchhhhcCCCEEE
Q 032487 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAV-NDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (139)
Q Consensus 9 ~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 87 (139)
..++++++|++-+|||||++.+..+++..-.+|+.|.+++.+.++. .+..+++++|||+|+++|+++..+++++.=+++
T Consensus 7 yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgvl 86 (213)
T KOG0091|consen 7 YQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGVL 86 (213)
T ss_pred EEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccceE
Confidence 4689999999999999999999999999989999999999988887 567899999999999999999999999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHhC--CCCCeEEEEEeCCCCcCCcCCCcccc
Q 032487 88 IVYDITNQASFERAKKWVQELQAQG--NPNMVMALAGNKADLLDARKVTAEAS 138 (139)
Q Consensus 88 ~v~~~~~~~s~~~~~~~~~~~~~~~--~~~~p~ivv~~k~D~~~~~~v~~~e~ 138 (139)
++||++|+.||+.++.|+.....+- +.+.-+.+||+|+||...++|+.|||
T Consensus 87 lvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEa 139 (213)
T KOG0091|consen 87 LVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEA 139 (213)
T ss_pred EEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHH
Confidence 9999999999999999999876643 34455899999999999999999986
No 68
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.96 E-value=2e-27 Score=153.35 Aligned_cols=124 Identities=20% Similarity=0.217 Sum_probs=107.8
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHhCCCC-cccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEE
Q 032487 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFI-EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 86 (139)
Q Consensus 8 ~~~~ki~i~G~~~~GKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 86 (139)
.+.+|++++|.+|||||||++++.++.+. ..+.++.+..+....+..++....+.+||++|++.+...+..++.++|++
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~ 81 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA 81 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence 45789999999999999999999999887 77888888877777777788778899999999999988888899999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCCcCC
Q 032487 87 IIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKV 133 (139)
Q Consensus 87 i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~~~v 133 (139)
++|||++++.+++.+..|+..+... .+.|+++|+||+|+.+.+++
T Consensus 82 llv~d~~~~~s~~~~~~~~~~~~~~--~~~p~iiv~NK~Dl~~~~~~ 126 (169)
T cd01892 82 CLVYDSSDPKSFSYCAEVYKKYFML--GEIPCLFVAAKADLDEQQQR 126 (169)
T ss_pred EEEEeCCCHHHHHHHHHHHHHhccC--CCCeEEEEEEcccccccccc
Confidence 9999999999999998888866432 47899999999999765544
No 69
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.96 E-value=3e-27 Score=150.86 Aligned_cols=126 Identities=48% Similarity=0.841 Sum_probs=108.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEEEEEE
Q 032487 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY 90 (139)
Q Consensus 11 ~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~ 90 (139)
+||+++|++|+|||||++++.+..+...+.++.+.......+...+....+.+||++|++.+...+..++.++|++++||
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence 58999999999999999999998877656666666666666666676788999999999999988888999999999999
Q ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCCcCCCcc
Q 032487 91 DITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAE 136 (139)
Q Consensus 91 ~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~~~v~~~ 136 (139)
|++++++++.++.|+..+......+.|+++++||+|+...+++..+
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~ 126 (162)
T cd04123 81 DITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKS 126 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHH
Confidence 9999999999999999998865558999999999999876655443
No 70
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.96 E-value=1.9e-27 Score=156.00 Aligned_cols=119 Identities=30% Similarity=0.602 Sum_probs=103.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEEEEEE
Q 032487 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY 90 (139)
Q Consensus 11 ~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~ 90 (139)
.||+++|++|+|||||++++..+.+...+.++.+..+ ...+..++....+.+||++|++.+..++..++.+++++++||
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~-~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~ 79 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENY-VHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCF 79 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeee-EEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEE
Confidence 3899999999999999999999988877777776654 345566777789999999999999999888999999999999
Q ss_pred ECCCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEeCCCCcCCc
Q 032487 91 DITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLLDAR 131 (139)
Q Consensus 91 ~~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~~k~D~~~~~ 131 (139)
|++++.+|+.+. .|+..+.... .+.|+++|+||+|+.+.+
T Consensus 80 dv~~~~sf~~~~~~~~~~i~~~~-~~~piilvgNK~Dl~~~~ 120 (189)
T cd04134 80 SVDSPDSLENVESKWLGEIREHC-PGVKLVLVALKCDLREAR 120 (189)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccCh
Confidence 999999999886 6999888753 579999999999997654
No 71
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.96 E-value=1.3e-27 Score=153.12 Aligned_cols=125 Identities=34% Similarity=0.608 Sum_probs=105.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEEEEEE
Q 032487 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY 90 (139)
Q Consensus 11 ~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~ 90 (139)
+||+++|++|+|||||++++.+..+...+.++.+ +........++..+.+.+||+||++++...+..++++++++++||
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIE-DSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVY 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEE
Confidence 5899999999999999999999887766666555 334555666777789999999999999999999999999999999
Q ss_pred ECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCCCCcCCcCCCcc
Q 032487 91 DITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARKVTAE 136 (139)
Q Consensus 91 ~~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~~k~D~~~~~~v~~~ 136 (139)
|++++.+|+.+..|...+.... ....|+++|+||+|+.+.+.++.+
T Consensus 80 d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~ 126 (164)
T smart00173 80 SITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTE 126 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHH
Confidence 9999999999999988877642 347899999999999876555543
No 72
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.96 E-value=5e-27 Score=151.13 Aligned_cols=128 Identities=41% Similarity=0.744 Sum_probs=112.8
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEEE
Q 032487 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (139)
Q Consensus 8 ~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 87 (139)
+..+|++++|++|+|||||++++..+.+.+.+.++.+.++....+.+++..+.+.+||++|++.+...+..++..+|+++
T Consensus 5 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 84 (169)
T cd04114 5 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALI 84 (169)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence 55699999999999999999999988877767777877777777788887789999999999999888888999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCCcCCCc
Q 032487 88 IVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTA 135 (139)
Q Consensus 88 ~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~~~v~~ 135 (139)
+|||..++.+++.+..|+..+........|+++|+||+|+.+.+++..
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~ 132 (169)
T cd04114 85 LTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQ 132 (169)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCH
Confidence 999999999999999999988876556799999999999987666553
No 73
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.96 E-value=5.1e-29 Score=154.16 Aligned_cols=132 Identities=44% Similarity=0.774 Sum_probs=122.3
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEE
Q 032487 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 86 (139)
Q Consensus 7 ~~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 86 (139)
+...+|++++|...+|||||+-+++..+|......+....|..+.+.+.+....+.||||+|+++|..+-+-++++.+++
T Consensus 10 ~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGa 89 (218)
T KOG0088|consen 10 KSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGA 89 (218)
T ss_pred CceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCce
Confidence 56789999999999999999999999999887777777778888888888889999999999999999999999999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCCcCCCcccc
Q 032487 87 IIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEAS 138 (139)
Q Consensus 87 i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~~~v~~~e~ 138 (139)
++|||+.|++||+.++.|...++..-...+.+++|+||+|+.++++|+-+||
T Consensus 90 lLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~Vt~qeA 141 (218)
T KOG0088|consen 90 LLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEERQVTRQEA 141 (218)
T ss_pred EEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHhhhhhHHHH
Confidence 9999999999999999999999997667788999999999999999998875
No 74
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.96 E-value=1.9e-27 Score=156.99 Aligned_cols=126 Identities=25% Similarity=0.349 Sum_probs=103.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCccccccc--------chhhhcC
Q 032487 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSL--------APMYYRG 82 (139)
Q Consensus 11 ~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~--------~~~~~~~ 82 (139)
+||+++|.+|||||||++++.+..+...+.++.+.+.+...+..++..+.+.+|||+|...+... ....+..
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 58999999999999999999999888777777776666666677887889999999997544221 2234788
Q ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhC---CCCCeEEEEEeCCCCcCCcCCCcc
Q 032487 83 AAAAIIVYDITNQASFERAKKWVQELQAQG---NPNMVMALAGNKADLLDARKVTAE 136 (139)
Q Consensus 83 ~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~---~~~~p~ivv~~k~D~~~~~~v~~~ 136 (139)
+|++++|||++++.+|+.++.|...+.... ....|+++|+||+|+.+.+.++.+
T Consensus 81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~ 137 (198)
T cd04142 81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRH 137 (198)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHH
Confidence 999999999999999999999998887753 467999999999999776555443
No 75
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.96 E-value=4.6e-27 Score=154.51 Aligned_cols=118 Identities=47% Similarity=0.834 Sum_probs=105.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCc-ccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEEEEE
Q 032487 11 AKLVLLGDVGAGKSSLVLRFVKGQFIE-FQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIV 89 (139)
Q Consensus 11 ~ki~i~G~~~~GKssli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v 89 (139)
+||+++|++++|||||+++|..+.+.. .+.++.+..+....+..++..+.+.+||++|++.+..++..++.++|++++|
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv 80 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC 80 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence 589999999999999999999988764 5777888877777888888889999999999999998888889999999999
Q ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcC
Q 032487 90 YDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLD 129 (139)
Q Consensus 90 ~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~ 129 (139)
||++++.+++.++.|+..+... ..+.|+++|+||+|+.+
T Consensus 81 ~d~~~~~s~~~~~~~~~~i~~~-~~~~piilv~nK~Dl~~ 119 (193)
T cd04118 81 YDLTDSSSFERAKFWVKELQNL-EEHCKIYLCGTKSDLIE 119 (193)
T ss_pred EECCCHHHHHHHHHHHHHHHhc-CCCCCEEEEEEcccccc
Confidence 9999999999999999998876 35789999999999864
No 76
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.95 E-value=3.3e-27 Score=154.43 Aligned_cols=118 Identities=31% Similarity=0.596 Sum_probs=101.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEEC-CcEEEEEEEeCCCcccccccchhhhcCCCEEEEE
Q 032487 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVN-DATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIV 89 (139)
Q Consensus 11 ~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v 89 (139)
+||+++|++|+|||||+++|.++.+...+.++.+.++.. .+... +..+.+.+|||+|++.+...+..++.++|++++|
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~-~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v 79 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVT-NIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLIC 79 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEE-EEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEE
Confidence 489999999999999999999998887777777765533 34454 6678999999999999999988899999999999
Q ss_pred EECCCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEeCCCCcCC
Q 032487 90 YDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLLDA 130 (139)
Q Consensus 90 ~~~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~~k~D~~~~ 130 (139)
||++++.+|+.+. .|+..+... ..+.|+++|+||+|+.+.
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~ 120 (187)
T cd04132 80 YAVDNPTSLDNVEDKWFPEVNHF-CPGTPIMLVGLKTDLRKD 120 (187)
T ss_pred EECCCHHHHHHHHHHHHHHHHHh-CCCCCEEEEEeChhhhhC
Confidence 9999999999986 588887765 357899999999998664
No 77
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.95 E-value=4.3e-27 Score=150.12 Aligned_cols=119 Identities=29% Similarity=0.562 Sum_probs=103.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEEEEE
Q 032487 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIV 89 (139)
Q Consensus 10 ~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v 89 (139)
.+||+++|++|||||||++++.+..+...+.++.+..+ ...+..++....+.+||++|++.+..++..++++++++++|
T Consensus 1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v 79 (162)
T cd04138 1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 79 (162)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheE-EEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEE
Confidence 36999999999999999999999887776777766443 45566777778899999999999999999999999999999
Q ss_pred EECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCCCCcC
Q 032487 90 YDITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLD 129 (139)
Q Consensus 90 ~~~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~~k~D~~~ 129 (139)
||++++.+|+.+..|...+.+.. ..+.|+++|+||+|+.+
T Consensus 80 ~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~ 120 (162)
T cd04138 80 FAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAA 120 (162)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 99999999999999998887753 35789999999999876
No 78
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.95 E-value=6.7e-27 Score=150.79 Aligned_cols=124 Identities=43% Similarity=0.778 Sum_probs=107.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEEEEEE
Q 032487 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY 90 (139)
Q Consensus 11 ~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~ 90 (139)
+||+++|++++|||||++++.+..+...+.++.+.++....+..++..+.+.+||+||++.+...+..+++++|+++++|
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 80 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence 58999999999999999999999887777778887777777788888889999999999999988999999999999999
Q ss_pred ECCCHHHHHHHHHHHHHHHHhC----CCCCeEEEEEeCCCCcCCcCCC
Q 032487 91 DITNQASFERAKKWVQELQAQG----NPNMVMALAGNKADLLDARKVT 134 (139)
Q Consensus 91 ~~~~~~s~~~~~~~~~~~~~~~----~~~~p~ivv~~k~D~~~~~~v~ 134 (139)
|++++.+++.+..|...+.... ..+.|+++|+||+|+.++..++
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~ 128 (172)
T cd01862 81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVS 128 (172)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccC
Confidence 9999999999988888765542 2378999999999998544333
No 79
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.95 E-value=4e-27 Score=155.49 Aligned_cols=113 Identities=33% Similarity=0.655 Sum_probs=104.2
Q ss_pred EcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEEEEEEECCCH
Q 032487 16 LGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQ 95 (139)
Q Consensus 16 ~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~~~~~~ 95 (139)
+|.++||||||++++..+.+...+.++.+.++....+..++..+.+.+||++|++.+..++..++++++++++|||+.++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~ 80 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR 80 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence 69999999999999998888777888999888888888888889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcC
Q 032487 96 ASFERAKKWVQELQAQGNPNMVMALAGNKADLLD 129 (139)
Q Consensus 96 ~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~ 129 (139)
.+|+.++.|+..+.... .++|+++|+||+|+.+
T Consensus 81 ~S~~~i~~w~~~i~~~~-~~~piilvgNK~Dl~~ 113 (200)
T smart00176 81 VTYKNVPNWHRDLVRVC-ENIPIVLCGNKVDVKD 113 (200)
T ss_pred HHHHHHHHHHHHHHHhC-CCCCEEEEEECccccc
Confidence 99999999999998864 5799999999999865
No 80
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.95 E-value=8.3e-27 Score=150.91 Aligned_cols=117 Identities=30% Similarity=0.560 Sum_probs=100.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEEEEEE
Q 032487 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY 90 (139)
Q Consensus 11 ~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~ 90 (139)
+|++++|++|+|||||++++....+..++.++.. +.+...+..++....+.+||++|++.+..++..+++++|++++||
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~ 79 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAF-DNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCF 79 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEE
Confidence 5899999999999999999998888776666653 445556677777789999999999999999999999999999999
Q ss_pred ECCCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEeCCCCcC
Q 032487 91 DITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLLD 129 (139)
Q Consensus 91 ~~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~~k~D~~~ 129 (139)
|+.++.+|+.+. .|+..+... ..+.|+++++||+|+..
T Consensus 80 d~~~~~sf~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~ 118 (173)
T cd04130 80 SVVNPSSFQNISEKWIPEIRKH-NPKAPIILVGTQADLRT 118 (173)
T ss_pred ECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeeChhhcc
Confidence 999999999975 788888764 35689999999999864
No 81
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.95 E-value=6.8e-27 Score=151.23 Aligned_cols=116 Identities=34% Similarity=0.619 Sum_probs=100.4
Q ss_pred EEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEEEEEEEC
Q 032487 13 LVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDI 92 (139)
Q Consensus 13 i~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~~~ 92 (139)
|+++|++|+|||||++++....+...+.++....+ ...+..++..+.+.+|||+|++.+..++..++.++|++++|||+
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~ 79 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENY-SADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSV 79 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeee-eEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEEC
Confidence 58999999999999999999988776666665443 45566777788999999999999999999999999999999999
Q ss_pred CCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEeCCCCcCC
Q 032487 93 TNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLLDA 130 (139)
Q Consensus 93 ~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~~k~D~~~~ 130 (139)
+++.+|+.+. .|+..+... .++.|+++|+||+|+...
T Consensus 80 ~~~~s~~~~~~~~~~~i~~~-~~~~piilv~nK~Dl~~~ 117 (174)
T smart00174 80 DSPASFENVKEKWYPEVKHF-CPNTPIILVGTKLDLRED 117 (174)
T ss_pred CCHHHHHHHHHHHHHHHHhh-CCCCCEEEEecChhhhhC
Confidence 9999999986 699988876 357999999999999763
No 82
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.95 E-value=1.2e-26 Score=147.18 Aligned_cols=125 Identities=54% Similarity=0.907 Sum_probs=111.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEEEEEE
Q 032487 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY 90 (139)
Q Consensus 11 ~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~ 90 (139)
+||+++|++++|||||++++.+..+...+.++.+.++....+..++....+.+||+||+..+...+..+++++|++++|+
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~ 80 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY 80 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence 58999999999999999999999988877888888888888888777799999999999998888899999999999999
Q ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCCcCCCc
Q 032487 91 DITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTA 135 (139)
Q Consensus 91 ~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~~~v~~ 135 (139)
|++++++++.+..|+..+........|+++++||+|+....+...
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~ 125 (159)
T cd00154 81 DITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVST 125 (159)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccccccH
Confidence 999999999999999999887556899999999999974444433
No 83
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.95 E-value=1.2e-26 Score=149.52 Aligned_cols=127 Identities=33% Similarity=0.580 Sum_probs=108.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEEEEE
Q 032487 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIV 89 (139)
Q Consensus 10 ~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v 89 (139)
.+||+++|++|+|||||++++.++.+...+.++.+.. +...+..++....+.+||++|++.+..++..+++.++++++|
T Consensus 1 ~~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv 79 (168)
T cd04177 1 DYKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDS-YRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLV 79 (168)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchhe-EEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEE
Confidence 3789999999999999999999988877667776643 356667777778999999999999999999999999999999
Q ss_pred EECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCCCCcCCcCCCccc
Q 032487 90 YDITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARKVTAEA 137 (139)
Q Consensus 90 ~~~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~~k~D~~~~~~v~~~e 137 (139)
||.+++.+++.+..|...+.... ..+.|+++++||+|+.+.+.++.++
T Consensus 80 ~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~ 128 (168)
T cd04177 80 YSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSRED 128 (168)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHH
Confidence 99999999999999999887643 4579999999999998776665443
No 84
>PLN03118 Rab family protein; Provisional
Probab=99.95 E-value=1.9e-26 Score=153.67 Aligned_cols=131 Identities=38% Similarity=0.662 Sum_probs=109.7
Q ss_pred CCcceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCE
Q 032487 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 85 (139)
Q Consensus 6 ~~~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ 85 (139)
.....+||+++|++|+|||||+++|....+. .+.++.+.++....+..++..+.+.+||+||++.+...+..+++.+|+
T Consensus 10 ~~~~~~kv~ivG~~~vGKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ 88 (211)
T PLN03118 10 GYDLSFKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQG 88 (211)
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHHhCCCC-CcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCE
Confidence 3456899999999999999999999987764 467777777777777777777899999999999999999999999999
Q ss_pred EEEEEECCCHHHHHHHHH-HHHHHHHhC-CCCCeEEEEEeCCCCcCCcCCCccc
Q 032487 86 AIIVYDITNQASFERAKK-WVQELQAQG-NPNMVMALAGNKADLLDARKVTAEA 137 (139)
Q Consensus 86 ~i~v~~~~~~~s~~~~~~-~~~~~~~~~-~~~~p~ivv~~k~D~~~~~~v~~~e 137 (139)
+++|||++++.+|+.+.. |...+.... ....|+++|+||+|+...+.++.++
T Consensus 89 ~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~ 142 (211)
T PLN03118 89 IILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREE 142 (211)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHH
Confidence 999999999999999875 666665543 3567999999999998776665443
No 85
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.95 E-value=2e-26 Score=147.29 Aligned_cols=119 Identities=45% Similarity=0.785 Sum_probs=106.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEEEEEE
Q 032487 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY 90 (139)
Q Consensus 11 ~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~ 90 (139)
+|++++|++++|||||++++.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++++||
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence 58999999999999999999998877667788887777777777777789999999999999888889999999999999
Q ss_pred ECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCCCCcC
Q 032487 91 DITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLD 129 (139)
Q Consensus 91 ~~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~~k~D~~~ 129 (139)
|.+++.+++.+..|+..+.... ....|+++|+||+|+..
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~ 120 (161)
T cd01863 81 DVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKEN 120 (161)
T ss_pred ECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccc
Confidence 9999999999999999988764 46799999999999973
No 86
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.95 E-value=6.1e-27 Score=150.36 Aligned_cols=125 Identities=34% Similarity=0.543 Sum_probs=101.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccc-cccchhhhcCCCEEEEEE
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERY-HSLAPMYYRGAAAAIIVY 90 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~-~~~~~~~~~~~~~~i~v~ 90 (139)
||+++|++|+|||||+++++...+...+.++.+..+ ...+..++..+.+.+||++|++.+ ......+++.+|++++||
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~ 79 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLY-SRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVY 79 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhc-eEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEE
Confidence 689999999999999999998777665555554333 455567777789999999998853 445667889999999999
Q ss_pred ECCCHHHHHHHHHHHHHHHHhC--CCCCeEEEEEeCCCCcCCcCCCccc
Q 032487 91 DITNQASFERAKKWVQELQAQG--NPNMVMALAGNKADLLDARKVTAEA 137 (139)
Q Consensus 91 ~~~~~~s~~~~~~~~~~~~~~~--~~~~p~ivv~~k~D~~~~~~v~~~e 137 (139)
|++++.+|+.++.|+..+.... ..+.|+++|+||+|+.+.+.++.++
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~ 128 (165)
T cd04146 80 SITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEE 128 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHH
Confidence 9999999999999998888753 3579999999999997776666544
No 87
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.95 E-value=3e-26 Score=148.22 Aligned_cols=118 Identities=32% Similarity=0.557 Sum_probs=101.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEEEEEE
Q 032487 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY 90 (139)
Q Consensus 11 ~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~ 90 (139)
+||+++|++|+|||||++++..+.+...+.++.+.. ....+.+++..+.+.+||++|++.+...+..+++++|++++||
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 79 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDH-YAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICF 79 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeee-eEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEE
Confidence 589999999999999999999988876666666543 3445667777888999999999999999999999999999999
Q ss_pred ECCCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEeCCCCcCC
Q 032487 91 DITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLLDA 130 (139)
Q Consensus 91 ~~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~~k~D~~~~ 130 (139)
|..++.+|+.+. .|+..+... ..+.|+++++||+|+.+.
T Consensus 80 ~~~~~~s~~~~~~~~~~~l~~~-~~~~piivv~nK~Dl~~~ 119 (174)
T cd04135 80 SVVNPASFQNVKEEWVPELKEY-APNVPYLLVGTQIDLRDD 119 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeEchhhhcC
Confidence 999999999985 688888766 578999999999998654
No 88
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.95 E-value=1.9e-26 Score=154.63 Aligned_cols=125 Identities=27% Similarity=0.422 Sum_probs=103.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCC-cccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhc-CCCEEEE
Q 032487 11 AKLVLLGDVGAGKSSLVLRFVKGQFI-EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYR-GAAAAII 88 (139)
Q Consensus 11 ~ki~i~G~~~~GKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~-~~~~~i~ 88 (139)
+||+++|++|+|||||+++|..+.+. ..+.++.+.++....+.+++....+.+||++|++ ......++. ++|++++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~--~~~~~~~~~~~ad~iil 78 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE--MWTEDSCMQYQGDAFVV 78 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc--hHHHhHHhhcCCCEEEE
Confidence 58999999999999999999887775 5556666556777778888888999999999998 223345566 8999999
Q ss_pred EEECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCCCCcCCcCCCccc
Q 032487 89 VYDITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARKVTAEA 137 (139)
Q Consensus 89 v~~~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~~k~D~~~~~~v~~~e 137 (139)
|||++++.+|+.+..|+..+.... ....|+++|+||+|+.+.++++.++
T Consensus 79 V~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~ 128 (221)
T cd04148 79 VYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQE 128 (221)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHH
Confidence 999999999999999999887753 3579999999999998777766554
No 89
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=5.2e-27 Score=143.06 Aligned_cols=135 Identities=40% Similarity=0.703 Sum_probs=126.3
Q ss_pred CCCCcceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCC
Q 032487 4 TGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGA 83 (139)
Q Consensus 4 ~~~~~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~ 83 (139)
+-..+..+|.+|+|+-|+|||+|+.++...++...-+.++|.++..+.+++.+.++++++||++|+++|+...+.+++++
T Consensus 5 pynysyifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrga 84 (215)
T KOG0097|consen 5 PYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGA 84 (215)
T ss_pred ccchhheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccc
Confidence 34567889999999999999999999999998887889999999999999999999999999999999999999999999
Q ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCCcCCCcccc
Q 032487 84 AAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEAS 138 (139)
Q Consensus 84 ~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~~~v~~~e~ 138 (139)
.+.++|||+..+.++..+..|+...++.-.++..+++++||.|+.+.+.|+.+|+
T Consensus 85 agalmvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~qrdv~yeea 139 (215)
T KOG0097|consen 85 AGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQRDVTYEEA 139 (215)
T ss_pred cceeEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhhcccCcHHHH
Confidence 9999999999999999999999999988778888999999999999999988875
No 90
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.95 E-value=3.9e-26 Score=145.92 Aligned_cols=120 Identities=23% Similarity=0.451 Sum_probs=98.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEEEEEE
Q 032487 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY 90 (139)
Q Consensus 11 ~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~ 90 (139)
+||+++|++|+|||||+.++..+.+...+.++.+ .+ ...+.+++..+.+.+||++|++. ..+++++|++++||
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~~-~~-~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~ 73 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEGG-RF-KKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVF 73 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcc-ce-EEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEE
Confidence 5899999999999999999998887765544433 33 46677888788899999999974 34567899999999
Q ss_pred ECCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEeCCCCcC--CcCCCccc
Q 032487 91 DITNQASFERAKKWVQELQAQGN-PNMVMALAGNKADLLD--ARKVTAEA 137 (139)
Q Consensus 91 ~~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~~k~D~~~--~~~v~~~e 137 (139)
|++++.||+.++.|+..+..... ...|+++|+||+|+.. .+.++.++
T Consensus 74 d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~ 123 (158)
T cd04103 74 SLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDAR 123 (158)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHH
Confidence 99999999999999999988643 5789999999999853 45566554
No 91
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.94 E-value=1.7e-26 Score=148.34 Aligned_cols=117 Identities=25% Similarity=0.377 Sum_probs=99.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEEEEEEE
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYD 91 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~~ 91 (139)
.|+++|++|+|||||++++.+..+...+.++.+... ..+++...++.+||++|++.+...+..+++++|++++|||
T Consensus 1 ~i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~----~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D 76 (164)
T cd04162 1 QILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS----VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVD 76 (164)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCcccccccCCcce----EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEE
Confidence 479999999999999999998877766777777542 2334445889999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCCcCC
Q 032487 92 ITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKV 133 (139)
Q Consensus 92 ~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~~~v 133 (139)
.+++.++...+.|+..+.... .+.|+++|+||+|+.+.+.+
T Consensus 77 ~t~~~s~~~~~~~l~~~~~~~-~~~piilv~NK~Dl~~~~~~ 117 (164)
T cd04162 77 SADSERLPLARQELHQLLQHP-PDLPLVVLANKQDLPAARSV 117 (164)
T ss_pred CCCHHHHHHHHHHHHHHHhCC-CCCcEEEEEeCcCCcCCCCH
Confidence 999999999999988887553 67999999999999876544
No 92
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.94 E-value=8.4e-26 Score=148.78 Aligned_cols=117 Identities=24% Similarity=0.412 Sum_probs=91.6
Q ss_pred eeEEEEEcCCCCcHHHHHH-HHHhCC-----CCcccccceee-EEEEEE--------EEECCcEEEEEEEeCCCcccccc
Q 032487 10 NAKLVLLGDVGAGKSSLVL-RFVKGQ-----FIEFQESTIGA-AFFSQT--------LAVNDATVKFEIWDTAGQERYHS 74 (139)
Q Consensus 10 ~~ki~i~G~~~~GKssli~-~l~~~~-----~~~~~~~~~~~-~~~~~~--------~~~~~~~~~~~i~d~~g~~~~~~ 74 (139)
.+||+++|++++|||||+. ++.... +...+.++.+. +.+... ..+++..+.+.+|||+|++. .
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~ 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence 4799999999999999995 555432 33456677752 322222 24577789999999999875 3
Q ss_pred cchhhhcCCCEEEEEEECCCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEeCCCCcC
Q 032487 75 LAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLLD 129 (139)
Q Consensus 75 ~~~~~~~~~~~~i~v~~~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~~k~D~~~ 129 (139)
....+++++|++++|||++++.||+.++ .|+..+.... +..|+++|+||+|+.+
T Consensus 80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~-~~~piilvgNK~DL~~ 134 (195)
T cd01873 80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC-PRVPVILVGCKLDLRY 134 (195)
T ss_pred hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhccc
Confidence 4556789999999999999999999997 6999887764 5789999999999974
No 93
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.94 E-value=2.2e-25 Score=144.23 Aligned_cols=119 Identities=34% Similarity=0.625 Sum_probs=101.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEEEEE
Q 032487 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIV 89 (139)
Q Consensus 10 ~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v 89 (139)
+.||+++|++|||||||++++....+...+.++.+..+ ...+.+++..+.+.+||++|++.+...+...+.++|++++|
T Consensus 1 ~~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v 79 (175)
T cd01870 1 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMC 79 (175)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccce-EEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEE
Confidence 36899999999999999999999888776777776544 34556777778999999999999998888889999999999
Q ss_pred EECCCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEeCCCCcCC
Q 032487 90 YDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLLDA 130 (139)
Q Consensus 90 ~~~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~~k~D~~~~ 130 (139)
||++++++|+.+. .|+..+... ..+.|+++|+||+|+.+.
T Consensus 80 ~~~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~ 120 (175)
T cd01870 80 FSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRND 120 (175)
T ss_pred EECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeeChhcccC
Confidence 9999999998885 688887765 357899999999998653
No 94
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.94 E-value=1.8e-25 Score=142.30 Aligned_cols=125 Identities=37% Similarity=0.646 Sum_probs=105.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEEEEEEE
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYD 91 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~~ 91 (139)
||+++|++|+|||||++++.+..+...+.++.+ +........++..+.+++||++|++.+...+..+++.+|++++|||
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 79 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYS 79 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEE
Confidence 689999999999999999998877666666655 4555666667667899999999999988888889999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEeCCCCcCCcCCCccc
Q 032487 92 ITNQASFERAKKWVQELQAQGN-PNMVMALAGNKADLLDARKVTAEA 137 (139)
Q Consensus 92 ~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~~k~D~~~~~~v~~~e 137 (139)
.+++.+++.+..|...+..... ...|+++++||+|+...+.++.++
T Consensus 80 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~ 126 (160)
T cd00876 80 ITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEE 126 (160)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHH
Confidence 9999999999999888887643 589999999999998765555443
No 95
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.94 E-value=7.9e-26 Score=148.52 Aligned_cols=129 Identities=35% Similarity=0.594 Sum_probs=118.2
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEEEE
Q 032487 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAII 88 (139)
Q Consensus 9 ~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 88 (139)
..+|++++|.+|+|||++..++....+...+.++++ +.+.+.+.+++....+.|+||+|++.+......++.+.+++++
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie-d~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~l 80 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE-DSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLL 80 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCcc-ccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEE
Confidence 468999999999999999999999999998999998 6778888889989999999999999999999999999999999
Q ss_pred EEECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCCCCcCCcCCCcccc
Q 032487 89 VYDITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARKVTAEAS 138 (139)
Q Consensus 89 v~~~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~~k~D~~~~~~v~~~e~ 138 (139)
||+++++.||+.++.+...+.+.. ....|+++||||+|+.+.++|+.+|+
T Consensus 81 Vysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg 131 (196)
T KOG0395|consen 81 VYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEG 131 (196)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHH
Confidence 999999999999999999995543 35689999999999999999999875
No 96
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.94 E-value=9.1e-25 Score=145.92 Aligned_cols=125 Identities=31% Similarity=0.577 Sum_probs=110.8
Q ss_pred CCCcceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCC
Q 032487 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAA 84 (139)
Q Consensus 5 ~~~~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~ 84 (139)
..+...+|++++|++|||||||+++++.+.+...+.++.+.++....+..++..+.+.+||++|++.+...+..++.+++
T Consensus 4 ~~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~ 83 (215)
T PTZ00132 4 MDEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQ 83 (215)
T ss_pred ccCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCC
Confidence 45677899999999999999999998888887778888888887777777778899999999999999888888899999
Q ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCC
Q 032487 85 AAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDA 130 (139)
Q Consensus 85 ~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~ 130 (139)
++++|||++++.+|..++.|+..+.... .+.|+++++||+|+.+.
T Consensus 84 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~i~lv~nK~Dl~~~ 128 (215)
T PTZ00132 84 CAIIMFDVTSRITYKNVPNWHRDIVRVC-ENIPIVLVGNKVDVKDR 128 (215)
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccCccc
Confidence 9999999999999999999999988763 57899999999998653
No 97
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.94 E-value=2.3e-25 Score=144.49 Aligned_cols=118 Identities=25% Similarity=0.461 Sum_probs=97.5
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEEE
Q 032487 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (139)
Q Consensus 8 ~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 87 (139)
+..+||+++|++++|||||++++..+.+.. +.++.+.++. ....+ ...+.+||++|++.+...+..+++++|+++
T Consensus 11 ~~~~ki~l~G~~~~GKTsL~~~~~~~~~~~-~~~t~~~~~~--~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii 85 (175)
T smart00177 11 NKEMRILMVGLDAAGKTTILYKLKLGESVT-TIPTIGFNVE--TVTYK--NISFTVWDVGGQDKIRPLWRHYYTNTQGLI 85 (175)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCCCC-cCCccccceE--EEEEC--CEEEEEEECCCChhhHHHHHHHhCCCCEEE
Confidence 446999999999999999999998776643 5667765543 23333 478999999999999999999999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCCCCcCC
Q 032487 88 IVYDITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDA 130 (139)
Q Consensus 88 ~v~~~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~~k~D~~~~ 130 (139)
+|||++++.+++....|+..+.... ..+.|+++|+||+|+.+.
T Consensus 86 ~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~ 129 (175)
T smart00177 86 FVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDA 129 (175)
T ss_pred EEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccC
Confidence 9999999999999988888775432 357899999999999754
No 98
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.94 E-value=1.8e-25 Score=144.14 Aligned_cols=118 Identities=27% Similarity=0.488 Sum_probs=96.5
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEEE
Q 032487 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (139)
Q Consensus 8 ~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 87 (139)
+..+||+++|++++|||||++++....+.. +.++.+.++. .+.. ..+.+++||++|++.+...+..++.++|+++
T Consensus 7 ~~~~kv~i~G~~~~GKTsli~~l~~~~~~~-~~~t~g~~~~--~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii 81 (168)
T cd04149 7 NKEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNVE--TVTY--KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLI 81 (168)
T ss_pred CCccEEEEECcCCCCHHHHHHHHccCCCcc-ccCCcccceE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence 456899999999999999999998776643 5566665543 2333 3488999999999999989999999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEeCCCCcCC
Q 032487 88 IVYDITNQASFERAKKWVQELQAQ-GNPNMVMALAGNKADLLDA 130 (139)
Q Consensus 88 ~v~~~~~~~s~~~~~~~~~~~~~~-~~~~~p~ivv~~k~D~~~~ 130 (139)
+|||++++.+++.+..|+..+... ...+.|+++|+||+|+.+.
T Consensus 82 ~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 125 (168)
T cd04149 82 FVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDA 125 (168)
T ss_pred EEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccC
Confidence 999999999999988877776543 2356899999999998653
No 99
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.93 E-value=3.5e-25 Score=141.64 Aligned_cols=115 Identities=23% Similarity=0.458 Sum_probs=94.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEEEEEE
Q 032487 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY 90 (139)
Q Consensus 11 ~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~ 90 (139)
+||+++|.++||||||++++..+.+.. +.++.+.... .+... .+.+.+||++|++.+...+..+++++|++++||
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~~-~~pt~g~~~~--~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~ 75 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 75 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCcc-cCCCCCcceE--EEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEE
Confidence 489999999999999999998777653 5667665442 33333 488999999999999999999999999999999
Q ss_pred ECCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEeCCCCcCC
Q 032487 91 DITNQASFERAKKWVQELQAQ-GNPNMVMALAGNKADLLDA 130 (139)
Q Consensus 91 ~~~~~~s~~~~~~~~~~~~~~-~~~~~p~ivv~~k~D~~~~ 130 (139)
|++++.+++.+..|+..+... .....|+++++||+|+.+.
T Consensus 76 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 116 (159)
T cd04150 76 DSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNA 116 (159)
T ss_pred eCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCC
Confidence 999999999988877776543 2346899999999999654
No 100
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.93 E-value=3.8e-25 Score=144.22 Aligned_cols=119 Identities=22% Similarity=0.424 Sum_probs=97.7
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEEE
Q 032487 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (139)
Q Consensus 8 ~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 87 (139)
+..+||+++|+++||||||++++....+.. +.++.+.+.. .+..+ ...+++||++|++.+..+|..+++++|+++
T Consensus 15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~~-~~pt~g~~~~--~~~~~--~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI 89 (181)
T PLN00223 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCcc-ccCCcceeEE--EEEEC--CEEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence 456899999999999999999998777653 5677775542 33333 488999999999999999999999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEeCCCCcCCc
Q 032487 88 IVYDITNQASFERAKKWVQELQAQ-GNPNMVMALAGNKADLLDAR 131 (139)
Q Consensus 88 ~v~~~~~~~s~~~~~~~~~~~~~~-~~~~~p~ivv~~k~D~~~~~ 131 (139)
+|||++++++++.+..++..+... ...+.|+++++||+|+.+..
T Consensus 90 ~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~ 134 (181)
T PLN00223 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (181)
T ss_pred EEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCC
Confidence 999999999999888777766542 23578999999999997653
No 101
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.93 E-value=4.8e-25 Score=142.02 Aligned_cols=115 Identities=22% Similarity=0.304 Sum_probs=97.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEEEEEEE
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYD 91 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~~ 91 (139)
+|+++|++++|||||++++.+. +...+.++.+.. ...+..+ ...+++||++|++.+...+..+++++|++++|||
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~--~~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D 75 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFT--PTKLRLD--KYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVD 75 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCcccce--EEEEEEC--CEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEE
Confidence 4899999999999999999976 555567777754 3344444 4889999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCCCCcCCc
Q 032487 92 ITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDAR 131 (139)
Q Consensus 92 ~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~~k~D~~~~~ 131 (139)
++++.+++.++.|+..+.... ....|+++|+||+|+.+.+
T Consensus 76 ~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~ 116 (167)
T cd04161 76 SSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNAL 116 (167)
T ss_pred CCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCC
Confidence 999999999999999887653 2578999999999997765
No 102
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.93 E-value=4.9e-25 Score=143.93 Aligned_cols=120 Identities=25% Similarity=0.401 Sum_probs=99.9
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEE-CCcEEEEEEEeCCCcccccccchhhhcCCCEEE
Q 032487 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAV-NDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (139)
Q Consensus 9 ~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 87 (139)
+.+||+++|++|||||||++++....+.. +.++.+.+.....+.. ++....+.+||++|++.+...+..+++++|+++
T Consensus 2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii 80 (183)
T cd04152 2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVN-TVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIV 80 (183)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCcCC-cCCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEE
Confidence 46899999999999999999999887654 3566666655555544 335688999999999999889999999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCCCCcC
Q 032487 88 IVYDITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLD 129 (139)
Q Consensus 88 ~v~~~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~~k~D~~~ 129 (139)
+|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+
T Consensus 81 ~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~ 123 (183)
T cd04152 81 FVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPN 123 (183)
T ss_pred EEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccc
Confidence 9999999999998888888776542 35789999999999864
No 103
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.93 E-value=5.2e-25 Score=145.44 Aligned_cols=122 Identities=25% Similarity=0.477 Sum_probs=102.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEEEEEEE
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYD 91 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~~ 91 (139)
||+++|.+|+|||||++++....+...+.++.. ......+.+++....+.+||++|+..+..++..++..+|++++|||
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d 79 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVE-EMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYA 79 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchh-hheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEE
Confidence 689999999999999999999887765555554 3445556677777889999999999988888889999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEeCCCCcC-CcCCC
Q 032487 92 ITNQASFERAKKWVQELQAQGN-PNMVMALAGNKADLLD-ARKVT 134 (139)
Q Consensus 92 ~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~~k~D~~~-~~~v~ 134 (139)
+.++.+++.+..|+..+..... .+.|+++|+||+|+.. .+.+.
T Consensus 80 ~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~ 124 (198)
T cd04147 80 VDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVP 124 (198)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEcccccccccccc
Confidence 9999999999999988877543 5799999999999865 34443
No 104
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.93 E-value=9.7e-25 Score=140.37 Aligned_cols=119 Identities=29% Similarity=0.462 Sum_probs=95.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEEEEEE
Q 032487 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY 90 (139)
Q Consensus 11 ~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~ 90 (139)
+|++++|.+|+|||||++++..+.+...+..+.. . ......+++..+++.+||++|.+.+...+..++..+|++++||
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~ 78 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLP-E-ITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVY 78 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCccc-c-eEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEE
Confidence 4899999999999999999999887654333222 2 2233345666789999999999887777777789999999999
Q ss_pred ECCCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEeCCCCcCCcC
Q 032487 91 DITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLLDARK 132 (139)
Q Consensus 91 ~~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~~k~D~~~~~~ 132 (139)
|++++.+++.+. .|+..+.... .+.|+++|+||+|+.+...
T Consensus 79 d~~~~~s~~~~~~~~~~~i~~~~-~~~pviiv~nK~Dl~~~~~ 120 (166)
T cd01893 79 SVDRPSTLERIRTKWLPLIRRLG-VKVPIILVGNKSDLRDGSS 120 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhcccccc
Confidence 999999999975 6888887764 4799999999999977554
No 105
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.93 E-value=4.8e-25 Score=134.50 Aligned_cols=114 Identities=32% Similarity=0.632 Sum_probs=87.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCC--cccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEEEEE
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKGQFI--EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIV 89 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v 89 (139)
||+|+|++|+|||||+++|.+.... ..+....+.+..............+.+||++|++.+...+...+.++|++++|
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv 80 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV 80 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence 7999999999999999999988765 12233333344444555666666699999999998888888889999999999
Q ss_pred EECCCHHHHHHHHH---HHHHHHHhCCCCCeEEEEEeCCC
Q 032487 90 YDITNQASFERAKK---WVQELQAQGNPNMVMALAGNKAD 126 (139)
Q Consensus 90 ~~~~~~~s~~~~~~---~~~~~~~~~~~~~p~ivv~~k~D 126 (139)
||.+++.+++.+.. |+..+... ..+.|+++|+||.|
T Consensus 81 ~D~s~~~s~~~~~~~~~~l~~~~~~-~~~~piilv~nK~D 119 (119)
T PF08477_consen 81 YDLSDPESLEYLSQLLKWLKNIRKR-DKNIPIILVGNKSD 119 (119)
T ss_dssp EECCGHHHHHHHHHHHHHHHHHHHH-SSCSEEEEEEE-TC
T ss_pred EcCCChHHHHHHHHHHHHHHHHHcc-CCCCCEEEEEeccC
Confidence 99999999999754 45555554 35699999999998
No 106
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.93 E-value=1.3e-24 Score=139.00 Aligned_cols=123 Identities=32% Similarity=0.562 Sum_probs=103.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEEEEEE
Q 032487 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY 90 (139)
Q Consensus 11 ~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~ 90 (139)
+||+++|++|+|||||++++....+...+.++.+.. .......++..+.+.+||++|++.+...+..+++.++++++++
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADS-YRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVF 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhh-EEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEE
Confidence 589999999999999999999888776555555433 3455567777889999999999999999999999999999999
Q ss_pred ECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCCCCcCCcCCC
Q 032487 91 DITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARKVT 134 (139)
Q Consensus 91 ~~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~~k~D~~~~~~v~ 134 (139)
|++++.+|+.+..|...+.... ..+.|+++|+||+|+.+.++.+
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~ 124 (164)
T cd04139 80 SITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVS 124 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccC
Confidence 9999999999999999888753 3579999999999997744333
No 107
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=2.4e-27 Score=146.85 Aligned_cols=132 Identities=34% Similarity=0.650 Sum_probs=117.0
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEEC---------CcEEEEEEEeCCCcccccccch
Q 032487 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVN---------DATVKFEIWDTAGQERYHSLAP 77 (139)
Q Consensus 7 ~~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~i~d~~g~~~~~~~~~ 77 (139)
...-+|.+.+|++|+|||||+.++..+++...-..+.|+++..+.+-++ +..+++++|||+|++.|+++..
T Consensus 6 ydylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTT 85 (219)
T KOG0081|consen 6 YDYLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTT 85 (219)
T ss_pred HHHHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHH
Confidence 3456788999999999999999999999988888899998877665552 2358999999999999999999
Q ss_pred hhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEeCCCCcCCcCCCcccc
Q 032487 78 MYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGN-PNMVMALAGNKADLLDARKVTAEAS 138 (139)
Q Consensus 78 ~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~~k~D~~~~~~v~~~e~ 138 (139)
.+++.+=+++++||+.+..||-++++|+..++.+.. .+.-+++++||+|+++.+.|+++|+
T Consensus 86 AFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa 147 (219)
T KOG0081|consen 86 AFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQA 147 (219)
T ss_pred HHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHH
Confidence 999999999999999999999999999999998764 4556999999999999999998876
No 108
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.93 E-value=1e-24 Score=141.82 Aligned_cols=124 Identities=35% Similarity=0.539 Sum_probs=103.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEEEEEE
Q 032487 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY 90 (139)
Q Consensus 11 ~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~ 90 (139)
.||+++|++|+|||||++++....+...+.++.+..+ ......++..+.+.+||+||++.+...+..++..+++++++|
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVY 80 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEE
Confidence 6899999999999999999998887665666555433 455566767788999999999999888889999999999999
Q ss_pred ECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCCCCcCCcCCCc
Q 032487 91 DITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARKVTA 135 (139)
Q Consensus 91 ~~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~~k~D~~~~~~v~~ 135 (139)
|.++..+++.++.|...+.... ..+.|+++++||+|+...+.++.
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~ 126 (180)
T cd04137 81 SVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVST 126 (180)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCH
Confidence 9999999999999888876642 45789999999999976555543
No 109
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.93 E-value=2e-24 Score=139.14 Aligned_cols=119 Identities=34% Similarity=0.648 Sum_probs=98.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEEEEEE
Q 032487 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY 90 (139)
Q Consensus 11 ~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~ 90 (139)
+||+++|++|+|||||+++|.+..+...+.++... ........++..+.+++||+||++.+.......++.+|++++||
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFD-NYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICF 79 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceee-eeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEE
Confidence 58999999999999999999998876555555543 33445566777889999999999988888888889999999999
Q ss_pred ECCCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEeCCCCcCCc
Q 032487 91 DITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLLDAR 131 (139)
Q Consensus 91 ~~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~~k~D~~~~~ 131 (139)
|.+++.++.... .|+..+... ....|+++|+||+|+.+..
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~ 120 (171)
T cd00157 80 SVDSPSSFENVKTKWIPEIRHY-CPNVPIILVGTKIDLRDDE 120 (171)
T ss_pred ECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEEccHHhhhch
Confidence 999999988754 688777765 3489999999999997765
No 110
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.93 E-value=1e-24 Score=142.30 Aligned_cols=118 Identities=24% Similarity=0.453 Sum_probs=96.3
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEEE
Q 032487 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (139)
Q Consensus 8 ~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 87 (139)
+..+||+++|++++|||||++++..+.+.. +.++.+.++. .+.. ..+.+.+||++|++.+...+..+++++|+++
T Consensus 15 ~~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~--~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI 89 (182)
T PTZ00133 15 KKEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVE--TVEY--KNLKFTMWDVGGQDKLRPLWRHYYQNTNGLI 89 (182)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceE--EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 346899999999999999999998776654 5566665443 3333 3488999999999999999999999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEeCCCCcCC
Q 032487 88 IVYDITNQASFERAKKWVQELQAQ-GNPNMVMALAGNKADLLDA 130 (139)
Q Consensus 88 ~v~~~~~~~s~~~~~~~~~~~~~~-~~~~~p~ivv~~k~D~~~~ 130 (139)
+|||++++.+++....++..+... .....|+++|+||+|+.+.
T Consensus 90 ~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~ 133 (182)
T PTZ00133 90 FVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNA 133 (182)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCC
Confidence 999999999999988777766432 2356899999999998653
No 111
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.93 E-value=1.4e-25 Score=145.17 Aligned_cols=121 Identities=33% Similarity=0.610 Sum_probs=109.6
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEEC-CcEEEEEEEeCCCcccccccchhhhcCCCEE
Q 032487 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVN-DATVKFEIWDTAGQERYHSLAPMYYRGAAAA 86 (139)
Q Consensus 8 ~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 86 (139)
...+|++++|+.++|||+++-.+..+.++..+.|+.- +.++..+.++ +..+.+.+|||+|+++|..+++..+.++|++
T Consensus 2 ~~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVF-dnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvf 80 (198)
T KOG0393|consen 2 SRRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVF-DNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVF 80 (198)
T ss_pred ceeeEEEEECCCCcCceEEEEEeccCcCcccccCeEE-ccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEE
Confidence 4578999999999999999999999999988888886 5567777884 8999999999999999999998899999999
Q ss_pred EEEEECCCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEeCCCCcCC
Q 032487 87 IIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLLDA 130 (139)
Q Consensus 87 i~v~~~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~~k~D~~~~ 130 (139)
++||++.++.||+++. +|+..+..++ ++.|+++||+|.||.++
T Consensus 81 l~cfsv~~p~S~~nv~~kW~pEi~~~c-p~vpiiLVGtk~DLr~d 124 (198)
T KOG0393|consen 81 LLCFSVVSPESFENVKSKWIPEIKHHC-PNVPIILVGTKADLRDD 124 (198)
T ss_pred EEEEEcCChhhHHHHHhhhhHHHHhhC-CCCCEEEEeehHHhhhC
Confidence 9999999999999954 8999999985 78999999999999854
No 112
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.93 E-value=2.5e-24 Score=138.92 Aligned_cols=114 Identities=26% Similarity=0.478 Sum_probs=94.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEEEEEEE
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYD 91 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~~ 91 (139)
||+++|+++||||||++++.+..+.. +.++.+..+. .+.++ .+.+.+||+||++.+...+..++.++|++++|+|
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~~--~~~~~--~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D 75 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNVE--TVEYK--NLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVD 75 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeEE--EEEEC--CEEEEEEECCCChhcchHHHHHhccCCEEEEEEe
Confidence 68999999999999999999876544 5666665442 23333 4889999999999998889999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCCCCcCC
Q 032487 92 ITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDA 130 (139)
Q Consensus 92 ~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~~k~D~~~~ 130 (139)
.+++.+++.+..|+..+.... ..+.|+++|+||+|+.+.
T Consensus 76 ~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 115 (169)
T cd04158 76 SSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGA 115 (169)
T ss_pred CCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccC
Confidence 999999999999988887532 346899999999999754
No 113
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.93 E-value=2.5e-24 Score=139.34 Aligned_cols=119 Identities=24% Similarity=0.392 Sum_probs=97.0
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEE
Q 032487 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 86 (139)
Q Consensus 7 ~~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 86 (139)
+...+||+++|++|+|||||++++.+..+. .+.++.+.. ...+.++ .+.+.+||+||++.+...+..+++++|++
T Consensus 11 ~~~~~kv~ivG~~~~GKTsL~~~l~~~~~~-~~~~t~g~~--~~~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~~d~~ 85 (173)
T cd04154 11 KEREMRILILGLDNAGKTTILKKLLGEDID-TISPTLGFQ--IKTLEYE--GYKLNIWDVGGQKTLRPYWRNYFESTDAL 85 (173)
T ss_pred CCCccEEEEECCCCCCHHHHHHHHccCCCC-CcCCccccc--eEEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEE
Confidence 456789999999999999999999977543 355666532 3344454 37899999999998888888899999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEeCCCCcCC
Q 032487 87 IIVYDITNQASFERAKKWVQELQAQ-GNPNMVMALAGNKADLLDA 130 (139)
Q Consensus 87 i~v~~~~~~~s~~~~~~~~~~~~~~-~~~~~p~ivv~~k~D~~~~ 130 (139)
++|||++++.++.....|+..+... ...+.|+++|+||+|+.+.
T Consensus 86 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 130 (173)
T cd04154 86 IWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGA 130 (173)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccC
Confidence 9999999999999988888877543 2357999999999999764
No 114
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.92 E-value=5.8e-24 Score=139.26 Aligned_cols=118 Identities=35% Similarity=0.605 Sum_probs=98.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEEEEE
Q 032487 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIV 89 (139)
Q Consensus 10 ~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v 89 (139)
+.|++++|++|+|||||++++..+.+...+.++....+ ...+..++....+.+||++|++.+.......+..+++++++
T Consensus 1 ~~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv 79 (187)
T cd04129 1 RRKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENY-VTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIG 79 (187)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceE-EEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEE
Confidence 36999999999999999999998777665555554433 34456677778899999999998887777788999999999
Q ss_pred EECCCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEeCCCCcC
Q 032487 90 YDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLLD 129 (139)
Q Consensus 90 ~~~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~~k~D~~~ 129 (139)
|+++++++|+.+. .|+..+.... +..|+++|+||+|+.+
T Consensus 80 ~~i~~~~s~~~~~~~~~~~i~~~~-~~~piilvgnK~Dl~~ 119 (187)
T cd04129 80 FAVDTPDSLENVRTKWIEEVRRYC-PNVPVILVGLKKDLRQ 119 (187)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEeeChhhhh
Confidence 9999999999986 6999988763 4699999999999865
No 115
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.92 E-value=2.1e-24 Score=137.85 Aligned_cols=115 Identities=21% Similarity=0.355 Sum_probs=94.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCC-CcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEEEEEE
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKGQF-IEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY 90 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~ 90 (139)
+|+++|+++||||||++++.+... ...+.++.+.... .+. .....+.+||+||++.+...+..+++++|++++|+
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~--~~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 76 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVE--SFE--KGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVI 76 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceE--EEE--ECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEE
Confidence 589999999999999999998753 4445666664332 222 23588999999999999999999999999999999
Q ss_pred ECCCHHHHHHHHHHHHHHHHhC---CCCCeEEEEEeCCCCcCC
Q 032487 91 DITNQASFERAKKWVQELQAQG---NPNMVMALAGNKADLLDA 130 (139)
Q Consensus 91 ~~~~~~s~~~~~~~~~~~~~~~---~~~~p~ivv~~k~D~~~~ 130 (139)
|++++.++..+..|+..+.... ..+.|+++|+||+|+.+.
T Consensus 77 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~ 119 (162)
T cd04157 77 DSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDA 119 (162)
T ss_pred eCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCC
Confidence 9999999988888888876532 257999999999998764
No 116
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.92 E-value=1.1e-26 Score=140.20 Aligned_cols=125 Identities=40% Similarity=0.747 Sum_probs=111.5
Q ss_pred EEEcCCCCcHHHHHHHHHhCCCC-cccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEEEEEEEC
Q 032487 14 VLLGDVGAGKSSLVLRFVKGQFI-EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDI 92 (139)
Q Consensus 14 ~i~G~~~~GKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~~~ 92 (139)
+++|.+++|||+|+-++..+.+- ..-.++.|+++-.+.+..++.+.++++|||+||++|++....+++.+|+++++||+
T Consensus 1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydi 80 (192)
T KOG0083|consen 1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDI 80 (192)
T ss_pred CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeec
Confidence 36899999999999877766554 33567888888888889999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCCcCCCcccc
Q 032487 93 TNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEAS 138 (139)
Q Consensus 93 ~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~~~v~~~e~ 138 (139)
.++.||++.+.|+..+..+....+.+.+++||||+..++.|..+++
T Consensus 81 ankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er~v~~ddg 126 (192)
T KOG0083|consen 81 ANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHERAVKRDDG 126 (192)
T ss_pred ccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchhhccccchH
Confidence 9999999999999999998778889999999999988877776653
No 117
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.92 E-value=1.1e-23 Score=140.82 Aligned_cols=123 Identities=41% Similarity=0.667 Sum_probs=108.6
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEEEE
Q 032487 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAII 88 (139)
Q Consensus 9 ~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 88 (139)
..+||+++|++|+|||||+++|.++.+...+.++.+..+...........+++.+||++|++.++.++..++.+++++++
T Consensus 4 ~~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~ 83 (219)
T COG1100 4 KEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILI 83 (219)
T ss_pred ceEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEE
Confidence 34899999999999999999999999988888888877766666665557899999999999999999999999999999
Q ss_pred EEECCC-HHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCCc
Q 032487 89 VYDITN-QASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131 (139)
Q Consensus 89 v~~~~~-~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~~ 131 (139)
+||..+ ..+++..+.|...+........|+++++||+|+..+.
T Consensus 84 ~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~ 127 (219)
T COG1100 84 VYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQ 127 (219)
T ss_pred EEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccch
Confidence 999999 5566668899999988765679999999999998874
No 118
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.92 E-value=2.1e-23 Score=135.33 Aligned_cols=120 Identities=30% Similarity=0.491 Sum_probs=100.8
Q ss_pred CCcceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCE
Q 032487 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 85 (139)
Q Consensus 6 ~~~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ 85 (139)
..++..||+++|+.++||||+++++....... ..||.|.+ ...+.+++ ..+.+||.+|+..++..|..++.++|+
T Consensus 10 ~~~~~~~ililGl~~sGKTtll~~l~~~~~~~-~~pT~g~~--~~~i~~~~--~~~~~~d~gG~~~~~~~w~~y~~~~~~ 84 (175)
T PF00025_consen 10 SKKKEIKILILGLDGSGKTTLLNRLKNGEISE-TIPTIGFN--IEEIKYKG--YSLTIWDLGGQESFRPLWKSYFQNADG 84 (175)
T ss_dssp TTTSEEEEEEEESTTSSHHHHHHHHHSSSEEE-EEEESSEE--EEEEEETT--EEEEEEEESSSGGGGGGGGGGHTTESE
T ss_pred ccCcEEEEEEECCCccchHHHHHHhhhccccc-cCcccccc--cceeeeCc--EEEEEEeccccccccccceeeccccce
Confidence 34789999999999999999999999765443 56666644 44455555 789999999999999999999999999
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEeCCCCcCC
Q 032487 86 AIIVYDITNQASFERAKKWVQELQAQ-GNPNMVMALAGNKADLLDA 130 (139)
Q Consensus 86 ~i~v~~~~~~~s~~~~~~~~~~~~~~-~~~~~p~ivv~~k~D~~~~ 130 (139)
+++|+|..+...+...++.+..+... .....|+++++||+|+.+.
T Consensus 85 iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~ 130 (175)
T PF00025_consen 85 IIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDA 130 (175)
T ss_dssp EEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTS
T ss_pred eEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCc
Confidence 99999999999988888877776653 2367999999999998875
No 119
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.91 E-value=6.3e-26 Score=143.12 Aligned_cols=130 Identities=32% Similarity=0.591 Sum_probs=119.9
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEE
Q 032487 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 86 (139)
Q Consensus 7 ~~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 86 (139)
-..-+|++|+|+.++||||++++++.+-+...+..++|.++..+.+.++....++.+||++|++.+..+...+++++.+.
T Consensus 17 ~e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~ 96 (246)
T KOG4252|consen 17 YERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQAS 96 (246)
T ss_pred hhhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccce
Confidence 46678999999999999999999999999988999999999888888888888899999999999999999999999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCCcCCCccc
Q 032487 87 IIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEA 137 (139)
Q Consensus 87 i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~~~v~~~e 137 (139)
++||+..|+.||+.+..|.+.+.... ..+|.++|-||+|+.+..++...|
T Consensus 97 vLVFSTTDr~SFea~~~w~~kv~~e~-~~IPtV~vqNKIDlveds~~~~~e 146 (246)
T KOG4252|consen 97 VLVFSTTDRYSFEATLEWYNKVQKET-ERIPTVFVQNKIDLVEDSQMDKGE 146 (246)
T ss_pred EEEEecccHHHHHHHHHHHHHHHHHh-ccCCeEEeeccchhhHhhhcchHH
Confidence 99999999999999999999998863 579999999999999988776654
No 120
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.91 E-value=1.6e-23 Score=135.77 Aligned_cols=116 Identities=27% Similarity=0.479 Sum_probs=95.1
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEEEE
Q 032487 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAII 88 (139)
Q Consensus 9 ~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 88 (139)
..+||+++|++++|||||++++..+.+.. +.++.+.+. .....+ ..++.+||+||++.+...+..+++++|++++
T Consensus 14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~ 88 (174)
T cd04153 14 KEYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNV--EEIVYK--NIRFLMWDIGGQESLRSSWNTYYTNTDAVIL 88 (174)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccce--EEEEEC--CeEEEEEECCCCHHHHHHHHHHhhcCCEEEE
Confidence 46899999999999999999999877654 456666543 233333 4789999999999998888999999999999
Q ss_pred EEECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCCCCcC
Q 032487 89 VYDITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLD 129 (139)
Q Consensus 89 v~~~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~~k~D~~~ 129 (139)
|+|++++.++...+.++..+.... ....|+++++||+|+.+
T Consensus 89 V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~ 130 (174)
T cd04153 89 VIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKG 130 (174)
T ss_pred EEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCC
Confidence 999999999988887777765432 35689999999999865
No 121
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.91 E-value=1.8e-23 Score=133.40 Aligned_cols=114 Identities=23% Similarity=0.440 Sum_probs=93.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEEEEEEE
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYD 91 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~~ 91 (139)
+|+++|++|||||||++++.+..+.. +.++.+... ..+... ....+.+||++|++.+...+..++..+|++++|+|
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~-~~~t~~~~~--~~~~~~-~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D 76 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVT-TIPTVGFNV--EMLQLE-KHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVD 76 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCccc-ccCccCcce--EEEEeC-CceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence 58999999999999999999887654 345555433 233332 34789999999999988888889999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCCCCcC
Q 032487 92 ITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLD 129 (139)
Q Consensus 92 ~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~~k~D~~~ 129 (139)
+.++.++.....|+..+.... ..+.|+++|+||+|+.+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 115 (160)
T cd04156 77 SSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPG 115 (160)
T ss_pred CCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECccccc
Confidence 999999999888888776532 25799999999999864
No 122
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.91 E-value=3.9e-23 Score=131.71 Aligned_cols=115 Identities=28% Similarity=0.494 Sum_probs=94.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEEEEEEE
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYD 91 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~~ 91 (139)
||+++|.+|||||||++++.+.... .+.++.+... ..+.+. ...+.+||+||++.+...+..++..+|++++|||
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~-~~~~t~~~~~--~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D 75 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVV-TTIPTIGFNV--ETVEYK--NVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVD 75 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCcCcce--EEEEEC--CEEEEEEECCCChhhHHHHHHHhccCCEEEEEEE
Confidence 6899999999999999999988743 3455555433 334444 3789999999999998899999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCCCCcCCc
Q 032487 92 ITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDAR 131 (139)
Q Consensus 92 ~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~~k~D~~~~~ 131 (139)
+.++.++.....|+..+.... ....|+++++||+|+.+..
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~ 116 (158)
T cd00878 76 SSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGAL 116 (158)
T ss_pred CCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCcccc
Confidence 999999999888888776632 3678999999999987643
No 123
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.91 E-value=4.6e-23 Score=131.51 Aligned_cols=114 Identities=27% Similarity=0.445 Sum_probs=90.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEEEEEEE
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYD 91 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~~ 91 (139)
||+++|++++|||||++++....+.. +.++.+.+.. .+.+ ....+++||+||++.+...+..++..+|++++|+|
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~--~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d 75 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVT-TIPTIGFNVE--TVTY--KNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVD 75 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcC-cCCccCcCeE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEE
Confidence 68999999999999999998776543 4455554432 2333 34789999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHH-hCCCCCeEEEEEeCCCCcCC
Q 032487 92 ITNQASFERAKKWVQELQA-QGNPNMVMALAGNKADLLDA 130 (139)
Q Consensus 92 ~~~~~s~~~~~~~~~~~~~-~~~~~~p~ivv~~k~D~~~~ 130 (139)
++++.++.....++..+.. ......|+++|+||+|+.+.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~ 115 (158)
T cd04151 76 STDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGA 115 (158)
T ss_pred CCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCC
Confidence 9999888776666655433 22357899999999998754
No 124
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=8.8e-24 Score=134.01 Aligned_cols=121 Identities=25% Similarity=0.448 Sum_probs=106.3
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEE
Q 032487 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 86 (139)
Q Consensus 7 ~~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 86 (139)
..+..+|+++|..++||||++++|..++.... .||+|. .+..+.+++ ++|++||.+|+++++.+|..++++.+++
T Consensus 14 ~~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGf--nVE~v~ykn--~~f~vWDvGGq~k~R~lW~~Y~~~t~~l 88 (181)
T KOG0070|consen 14 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGF--NVETVEYKN--ISFTVWDVGGQEKLRPLWKHYFQNTQGL 88 (181)
T ss_pred CcceEEEEEEeccCCCceeeeEeeccCCcccC-CCcccc--ceeEEEEcc--eEEEEEecCCCcccccchhhhccCCcEE
Confidence 56789999999999999999999998887664 788884 566677776 8999999999999999999999999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEeCCCCcCCcC
Q 032487 87 IIVYDITNQASFERAKKWVQELQAQGN-PNMVMALAGNKADLLDARK 132 (139)
Q Consensus 87 i~v~~~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~~k~D~~~~~~ 132 (139)
|+|+|.+|++.+...++-+..+..+.. ...|+++++||.|++.+..
T Consensus 89 IfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als 135 (181)
T KOG0070|consen 89 IFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALS 135 (181)
T ss_pred EEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCC
Confidence 999999999999998887777777643 7899999999999988754
No 125
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.91 E-value=4.6e-23 Score=134.71 Aligned_cols=118 Identities=24% Similarity=0.387 Sum_probs=94.7
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEEE
Q 032487 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (139)
Q Consensus 8 ~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 87 (139)
.+.++|+++|++|+|||||++++.+..+.. +.++.+.+ ...+..++ .++.+||++|++.+...+..++.++|+++
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~ad~ii 89 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQ-HQPTQHPT--SEELAIGN--IKFTTFDLGGHQQARRLWKDYFPEVNGIV 89 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCcc-cCCccccc--eEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence 567999999999999999999999876543 33444432 23333443 78999999999999889999999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEeCCCCcCC
Q 032487 88 IVYDITNQASFERAKKWVQELQAQ-GNPNMVMALAGNKADLLDA 130 (139)
Q Consensus 88 ~v~~~~~~~s~~~~~~~~~~~~~~-~~~~~p~ivv~~k~D~~~~ 130 (139)
+|+|++++.++...+.++..+... ...+.|+++|+||+|+...
T Consensus 90 ~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~ 133 (184)
T smart00178 90 YLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYA 133 (184)
T ss_pred EEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCC
Confidence 999999999998888887776543 2357899999999998653
No 126
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.90 E-value=4.4e-23 Score=132.49 Aligned_cols=115 Identities=28% Similarity=0.401 Sum_probs=91.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCC------CcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCE
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKGQF------IEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 85 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ 85 (139)
+|+++|++|+|||||++++.+... ...+.++.+.++ ..+.++ ...+.+||+||++.+...+..++..+|+
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 76 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNI--GTIEVG--NARLKFWDLGGQESLRSLWDKYYAECHA 76 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccce--EEEEEC--CEEEEEEECCCChhhHHHHHHHhCCCCE
Confidence 589999999999999999986432 122344444433 234444 4789999999999998888899999999
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCCCCcCC
Q 032487 86 AIIVYDITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDA 130 (139)
Q Consensus 86 ~i~v~~~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~~k~D~~~~ 130 (139)
+++|+|+.++.++.....|+..+.... ..+.|+++++||+|+.+.
T Consensus 77 ~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~ 122 (167)
T cd04160 77 IIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDA 122 (167)
T ss_pred EEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccC
Confidence 999999999999988888888776532 357899999999998664
No 127
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.90 E-value=7.3e-23 Score=127.28 Aligned_cols=119 Identities=24% Similarity=0.378 Sum_probs=98.7
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEE
Q 032487 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 86 (139)
Q Consensus 7 ~~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 86 (139)
+.+.++|+++|..|+||||++++|.+... ....|+.|. ..++..+++ +++++||.+|+...+..|..+|.+.|++
T Consensus 13 kerE~riLiLGLdNsGKTti~~kl~~~~~-~~i~pt~gf--~Iktl~~~~--~~L~iwDvGGq~~lr~~W~nYfestdgl 87 (185)
T KOG0073|consen 13 KEREVRILILGLDNSGKTTIVKKLLGEDT-DTISPTLGF--QIKTLEYKG--YTLNIWDVGGQKTLRSYWKNYFESTDGL 87 (185)
T ss_pred hhheeEEEEEecCCCCchhHHHHhcCCCc-cccCCccce--eeEEEEecc--eEEEEEEcCCcchhHHHHHHhhhccCeE
Confidence 56699999999999999999999998763 335667764 445555555 8999999999999999999999999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCCCCcCC
Q 032487 87 IIVYDITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDA 130 (139)
Q Consensus 87 i~v~~~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~~k~D~~~~ 130 (139)
++|+|..|+..++.....+..+.... -...|+++++||.|+..+
T Consensus 88 IwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~ 132 (185)
T KOG0073|consen 88 IWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGA 132 (185)
T ss_pred EEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccc
Confidence 99999999998888776666655532 356899999999999843
No 128
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.90 E-value=1.8e-22 Score=132.34 Aligned_cols=118 Identities=25% Similarity=0.408 Sum_probs=95.6
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEE
Q 032487 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 86 (139)
Q Consensus 7 ~~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 86 (139)
..+..||+++|++|+|||||++++.+..+. .+.++.+.. ...+.+++ ..+.+||+||++.+...+..++.+++++
T Consensus 16 ~~~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~--~~~i~~~~--~~~~l~D~~G~~~~~~~~~~~~~~ad~i 90 (190)
T cd00879 16 YNKEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPT--SEELTIGN--IKFKTFDLGGHEQARRLWKDYFPEVDGI 90 (190)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCcc--eEEEEECC--EEEEEEECCCCHHHHHHHHHHhccCCEE
Confidence 356799999999999999999999987664 344555443 23344444 6789999999998888888889999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCCCCcC
Q 032487 87 IIVYDITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLD 129 (139)
Q Consensus 87 i~v~~~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~~k~D~~~ 129 (139)
++|+|..+..+++....|+..+.... ..+.|+++++||+|+.+
T Consensus 91 ilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~ 134 (190)
T cd00879 91 VFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPG 134 (190)
T ss_pred EEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCC
Confidence 99999999999988888887776532 35689999999999864
No 129
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.90 E-value=2e-22 Score=127.84 Aligned_cols=116 Identities=30% Similarity=0.484 Sum_probs=96.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEEEEEEE
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYD 91 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~~ 91 (139)
.|+++|++|+|||||++++.+.++...+.++.+.... .+..++ ..+.+||++|+..+...+..++..+|++++|+|
T Consensus 1 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 76 (159)
T cd04159 1 EITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMR--KVTKGN--VTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVD 76 (159)
T ss_pred CEEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceE--EEEECC--EEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEE
Confidence 3789999999999999999999888777777775543 233333 789999999999999888999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEeCCCCcCCc
Q 032487 92 ITNQASFERAKKWVQELQAQ-GNPNMVMALAGNKADLLDAR 131 (139)
Q Consensus 92 ~~~~~s~~~~~~~~~~~~~~-~~~~~p~ivv~~k~D~~~~~ 131 (139)
+.++.++.....|+..+... .....|+++|+||+|+.+..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~ 117 (159)
T cd04159 77 AADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGAL 117 (159)
T ss_pred CCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCc
Confidence 99999998888777776543 23578999999999987653
No 130
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.88 E-value=2.2e-21 Score=122.58 Aligned_cols=121 Identities=32% Similarity=0.535 Sum_probs=99.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEEEEE
Q 032487 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIV 89 (139)
Q Consensus 10 ~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v 89 (139)
.+||+++|.+|+|||||++++....+...+.++.+.+.....+..++..+.+.+||+||+..+...+...+..++.++.+
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~ 80 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV 80 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence 37999999999999999999999886666677777777666667776668899999999998888888888899999999
Q ss_pred EECCCH-HHHHHHH-HHHHHHHHhCCCCCeEEEEEeCCCCcCC
Q 032487 90 YDITNQ-ASFERAK-KWVQELQAQGNPNMVMALAGNKADLLDA 130 (139)
Q Consensus 90 ~~~~~~-~s~~~~~-~~~~~~~~~~~~~~p~ivv~~k~D~~~~ 130 (139)
+|.... .++.... .|...+........|+++++||+|+...
T Consensus 81 ~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 123 (161)
T TIGR00231 81 FDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDA 123 (161)
T ss_pred EEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcc
Confidence 998876 6666544 6777666654448899999999999764
No 131
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.88 E-value=3.4e-21 Score=124.42 Aligned_cols=120 Identities=22% Similarity=0.347 Sum_probs=94.4
Q ss_pred CCcceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCE
Q 032487 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 85 (139)
Q Consensus 6 ~~~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ 85 (139)
.....++++++|++|+|||||++++.+..+.. +.++.+.+ ...+..++ ..+.+||++|+..+...+..+++.+|+
T Consensus 10 ~~~~~~~v~i~G~~g~GKStLl~~l~~~~~~~-~~~t~g~~--~~~i~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ 84 (173)
T cd04155 10 KSSEEPRILILGLDNAGKTTILKQLASEDISH-ITPTQGFN--IKTVQSDG--FKLNVWDIGGQRAIRPYWRNYFENTDC 84 (173)
T ss_pred ccCCccEEEEEccCCCCHHHHHHHHhcCCCcc-cCCCCCcc--eEEEEECC--EEEEEEECCCCHHHHHHHHHHhcCCCE
Confidence 34558999999999999999999999876543 44555533 23344444 679999999998888888888999999
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEeCCCCcCC
Q 032487 86 AIIVYDITNQASFERAKKWVQELQAQ-GNPNMVMALAGNKADLLDA 130 (139)
Q Consensus 86 ~i~v~~~~~~~s~~~~~~~~~~~~~~-~~~~~p~ivv~~k~D~~~~ 130 (139)
+++|+|+.+..++.....++..+... .....|+++++||+|+.+.
T Consensus 85 ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 130 (173)
T cd04155 85 LIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATA 130 (173)
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccC
Confidence 99999999998888877776665543 2357899999999998654
No 132
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=1.2e-21 Score=119.11 Aligned_cols=120 Identities=29% Similarity=0.531 Sum_probs=101.2
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEEE
Q 032487 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (139)
Q Consensus 8 ~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 87 (139)
.+.++|+++|..++||||++..|....... ..+|.| |.+.++++.+ ..|.+||.+|+++.+..|..++.+..++|
T Consensus 15 ~KE~~ilmlGLd~aGKTtiLyKLkl~~~~~-~ipTvG--FnvetVtykN--~kfNvwdvGGqd~iRplWrhYy~gtqglI 89 (180)
T KOG0071|consen 15 NKEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVG--FNVETVTYKN--VKFNVWDVGGQDKIRPLWRHYYTGTQGLI 89 (180)
T ss_pred cccceEEEEecccCCceehhhHHhcCCCcc-cccccc--eeEEEEEeee--eEEeeeeccCchhhhHHHHhhccCCceEE
Confidence 458899999999999999999999766443 566776 5677777777 78999999999999999999999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCCCCcCCcC
Q 032487 88 IVYDITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARK 132 (139)
Q Consensus 88 ~v~~~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~~k~D~~~~~~ 132 (139)
+|+|..+++..+..++-+..+-... -...|+++.+||.|++++..
T Consensus 90 FV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~ 135 (180)
T KOG0071|consen 90 FVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMK 135 (180)
T ss_pred EEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccC
Confidence 9999999988888876555554432 36889999999999998854
No 133
>PTZ00099 rab6; Provisional
Probab=99.87 E-value=5.2e-21 Score=124.17 Aligned_cols=105 Identities=50% Similarity=0.826 Sum_probs=92.4
Q ss_pred CCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC
Q 032487 34 QFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGN 113 (139)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~ 113 (139)
.+.+.+.++.|.++..+.+.+++..+++.+|||+|++.+..++..+++++|++++|||++++.+|+.+..|+..+.....
T Consensus 4 ~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~ 83 (176)
T PTZ00099 4 TFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERG 83 (176)
T ss_pred CcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcC
Confidence 45566788999999888888888889999999999999999999999999999999999999999999999999877655
Q ss_pred CCCeEEEEEeCCCCcCCcCCCcccc
Q 032487 114 PNMVMALAGNKADLLDARKVTAEAS 138 (139)
Q Consensus 114 ~~~p~ivv~~k~D~~~~~~v~~~e~ 138 (139)
...|+++|+||+|+.+.+.++.+++
T Consensus 84 ~~~piilVgNK~DL~~~~~v~~~e~ 108 (176)
T PTZ00099 84 KDVIIALVGNKTDLGDLRKVTYEEG 108 (176)
T ss_pred CCCeEEEEEECcccccccCCCHHHH
Confidence 6789999999999987666766543
No 134
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.87 E-value=4.8e-21 Score=126.96 Aligned_cols=122 Identities=23% Similarity=0.176 Sum_probs=86.4
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccc---------cccchh
Q 032487 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERY---------HSLAPM 78 (139)
Q Consensus 8 ~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~---------~~~~~~ 78 (139)
+..++|+++|++|||||||++++.+...........+.......+...+. ..+.+||+||.... ... ..
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~-~~ 116 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDG-REVLLTDTVGFIRDLPHQLVEAFRST-LE 116 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCC-ceEEEeCCCccccCCCHHHHHHHHHH-HH
Confidence 44689999999999999999999987643322222222223333444332 37899999997321 111 12
Q ss_pred hhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCCc
Q 032487 79 YYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131 (139)
Q Consensus 79 ~~~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~~ 131 (139)
.+..+|++++|+|++++.++.....|...+......+.|+++|+||+|+.+..
T Consensus 117 ~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~ 169 (204)
T cd01878 117 EVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDE 169 (204)
T ss_pred HHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChH
Confidence 35689999999999998888877777777776545578999999999987654
No 135
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.86 E-value=5.9e-21 Score=123.92 Aligned_cols=115 Identities=19% Similarity=0.247 Sum_probs=84.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC-------CCccccc------ceeeEEEEEEEEE-----CCcEEEEEEEeCCCccccc
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKGQ-------FIEFQES------TIGAAFFSQTLAV-----NDATVKFEIWDTAGQERYH 73 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~~-------~~~~~~~------~~~~~~~~~~~~~-----~~~~~~~~i~d~~g~~~~~ 73 (139)
+|+++|++++|||||+++|++.. +...+.+ ..|.++....+.. ++..+.+.+|||||++.+.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 68999999999999999998742 1111111 2233444333222 5567889999999999998
Q ss_pred ccchhhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCC
Q 032487 74 SLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDA 130 (139)
Q Consensus 74 ~~~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~ 130 (139)
..+..++..+|++++|+|++++.++.....|.... ..+.|+++|+||+|+.+.
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~----~~~~~iiiv~NK~Dl~~~ 134 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYLAL----ENNLEIIPVINKIDLPSA 134 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHH----HcCCCEEEEEECCCCCcC
Confidence 88888999999999999999876665555554322 236789999999998653
No 136
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.86 E-value=7.4e-21 Score=126.07 Aligned_cols=119 Identities=18% Similarity=0.306 Sum_probs=89.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCC-CEEEEEE
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGA-AAAIIVY 90 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~-~~~i~v~ 90 (139)
+|+++|++++|||+|+++|....+..+..++ ............+....+.+||+||+..++..+..+++.+ +++++|+
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~-~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~Vv 80 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSI-EPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVV 80 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcE-eecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEE
Confidence 6899999999999999999988776544332 2222221121123346799999999999988888888998 9999999
Q ss_pred ECCCH-HHHHHHHHHHHHHHHh---CCCCCeEEEEEeCCCCcCCc
Q 032487 91 DITNQ-ASFERAKKWVQELQAQ---GNPNMVMALAGNKADLLDAR 131 (139)
Q Consensus 91 ~~~~~-~s~~~~~~~~~~~~~~---~~~~~p~ivv~~k~D~~~~~ 131 (139)
|+.+. .++.....|+..+... .....|+++++||+|+..+.
T Consensus 81 D~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~ 125 (203)
T cd04105 81 DSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAK 125 (203)
T ss_pred ECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcccC
Confidence 99987 6777777776655432 13579999999999987654
No 137
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.86 E-value=4.6e-21 Score=126.21 Aligned_cols=116 Identities=21% Similarity=0.290 Sum_probs=85.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh--CCCCccc------------ccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccc
Q 032487 11 AKLVLLGDVGAGKSSLVLRFVK--GQFIEFQ------------ESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLA 76 (139)
Q Consensus 11 ~ki~i~G~~~~GKssli~~l~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~ 76 (139)
.+|+++|.+++|||||+++|++ ..+.... ..+.+.++......+.+....+.+|||||++.+...+
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 82 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV 82 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence 4899999999999999999997 3433221 1234455555555555556889999999999998888
Q ss_pred hhhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCC
Q 032487 77 PMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDA 130 (139)
Q Consensus 77 ~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~ 130 (139)
..+++++|++++|+|+.+.. +.....++..+.. .+.|+++++||+|+.+.
T Consensus 83 ~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~---~~~p~iiv~NK~Dl~~~ 132 (194)
T cd01891 83 ERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE---LGLKPIVVINKIDRPDA 132 (194)
T ss_pred HHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH---cCCCEEEEEECCCCCCC
Confidence 89999999999999998742 2333344444433 36789999999999654
No 138
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.86 E-value=6.3e-21 Score=122.73 Aligned_cols=120 Identities=21% Similarity=0.161 Sum_probs=82.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCccc----ccccchhh---hcCCC
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER----YHSLAPMY---YRGAA 84 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~----~~~~~~~~---~~~~~ 84 (139)
+|+++|.+|+|||||+++|.+........+..........+.+++ ...+.+|||||... ...+...+ +..+|
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~-~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d 80 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDD-GRSFVVADIPGLIEGASEGKGLGHRFLRHIERTR 80 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCC-CCeEEEEecCcccCcccccCCchHHHHHHHHhCC
Confidence 689999999999999999997553211111111111122233333 24799999999632 22222332 44699
Q ss_pred EEEEEEECCCH-HHHHHHHHHHHHHHHhCC--CCCeEEEEEeCCCCcCCcC
Q 032487 85 AAIIVYDITNQ-ASFERAKKWVQELQAQGN--PNMVMALAGNKADLLDARK 132 (139)
Q Consensus 85 ~~i~v~~~~~~-~s~~~~~~~~~~~~~~~~--~~~p~ivv~~k~D~~~~~~ 132 (139)
++++|+|++++ .+++.+..|.+.+..... ...|+++|+||+|+.+...
T Consensus 81 ~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~ 131 (170)
T cd01898 81 LLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEE 131 (170)
T ss_pred EEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchh
Confidence 99999999999 788888999888876532 4689999999999876543
No 139
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.86 E-value=2e-20 Score=115.48 Aligned_cols=128 Identities=22% Similarity=0.369 Sum_probs=102.2
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHhCCCCc--ccccceeeEEEEEEE-EECCcEEEEEEEeCCCcccc-cccchhhhcCC
Q 032487 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIE--FQESTIGAAFFSQTL-AVNDATVKFEIWDTAGQERY-HSLAPMYYRGA 83 (139)
Q Consensus 8 ~~~~ki~i~G~~~~GKssli~~l~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~i~d~~g~~~~-~~~~~~~~~~~ 83 (139)
.+..|++++|..++|||++++++..+.... +..+|+... +...+ +..+....+.++||.|.... ..+...+++-+
T Consensus 7 Gk~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDi-Y~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~a 85 (198)
T KOG3883|consen 7 GKVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDI-YVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFA 85 (198)
T ss_pred CcceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhh-eeEeeecCCChhheEEEeecccccCchhhhhHhHhccC
Confidence 456899999999999999999999765543 345566543 34433 34556678999999998777 55777899999
Q ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCCCCcCCcCCCcc
Q 032487 84 AAAIIVYDITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARKVTAE 136 (139)
Q Consensus 84 ~~~i~v~~~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~~k~D~~~~~~v~~~ 136 (139)
|++++|||..|++||+.+..+...|.+.. +..+|+++++||+|+.+.+++..+
T Consensus 86 DafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d 139 (198)
T KOG3883|consen 86 DAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMD 139 (198)
T ss_pred ceEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCHH
Confidence 99999999999999999887777777753 467999999999999888777654
No 140
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.85 E-value=2.5e-20 Score=119.75 Aligned_cols=120 Identities=20% Similarity=0.223 Sum_probs=79.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccc---------cchhhhc
Q 032487 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHS---------LAPMYYR 81 (139)
Q Consensus 11 ~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~---------~~~~~~~ 81 (139)
.+|+++|++|+|||||+++|.+..+.....+............. ....+.+|||||...... .......
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 78 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDY--KYLRWQVIDTPGLLDRPLEERNTIEMQAITALAH 78 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEcc--CceEEEEEECCCcCCccccCCchHHHHHHHHHHh
Confidence 37999999999999999999987664322221111122222222 347899999999742110 0001112
Q ss_pred CCCEEEEEEECCCHHH--HHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCCcCC
Q 032487 82 GAAAAIIVYDITNQAS--FERAKKWVQELQAQGNPNMVMALAGNKADLLDARKV 133 (139)
Q Consensus 82 ~~~~~i~v~~~~~~~s--~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~~~v 133 (139)
.+|++++|+|+++..+ ++....|+..+.... ...|+++|+||+|+.+...+
T Consensus 79 ~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~ 131 (168)
T cd01897 79 LRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLF-KNKPVIVVLNKIDLLTFEDL 131 (168)
T ss_pred ccCcEEEEEeCCcccccchHHHHHHHHHHHhhc-CcCCeEEEEEccccCchhhH
Confidence 3689999999998754 355667887776542 47899999999999765443
No 141
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.85 E-value=1.7e-20 Score=133.13 Aligned_cols=120 Identities=22% Similarity=0.188 Sum_probs=87.3
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcc---------cccccchhh
Q 032487 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQE---------RYHSLAPMY 79 (139)
Q Consensus 9 ~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~---------~~~~~~~~~ 79 (139)
..++|+++|.+|+|||||+|+|.+........+....+.....+...+ ...+.+|||+|.. .+...+ ..
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~-~~~i~l~DT~G~~~~l~~~lie~f~~tl-e~ 265 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPD-GGEVLLTDTVGFIRDLPHELVAAFRATL-EE 265 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCC-CceEEEEecCcccccCCHHHHHHHHHHH-HH
Confidence 348999999999999999999998764432222222334455555533 2578999999972 222221 24
Q ss_pred hcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCC
Q 032487 80 YRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDA 130 (139)
Q Consensus 80 ~~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~ 130 (139)
+.++|++++|+|++++.+.+.+..|...+......+.|+++|+||+|+.+.
T Consensus 266 ~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~ 316 (351)
T TIGR03156 266 VREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDE 316 (351)
T ss_pred HHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCCh
Confidence 778999999999999988877777776666654457899999999999654
No 142
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.85 E-value=5.6e-20 Score=115.08 Aligned_cols=117 Identities=47% Similarity=0.821 Sum_probs=91.9
Q ss_pred EEcCCCCcHHHHHHHHHhCCC-CcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEEEEEEECC
Q 032487 15 LLGDVGAGKSSLVLRFVKGQF-IEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDIT 93 (139)
Q Consensus 15 i~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~~~~ 93 (139)
++|++|+|||||++++.+... .....++. .+..............+.+||++|...+...+...+..+|++++|+|++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 79 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT 79 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence 589999999999999998776 33334444 5555555665566788999999999888777788889999999999999
Q ss_pred CHHHHHHHHHHHHH-HHHhCCCCCeEEEEEeCCCCcCCcC
Q 032487 94 NQASFERAKKWVQE-LQAQGNPNMVMALAGNKADLLDARK 132 (139)
Q Consensus 94 ~~~s~~~~~~~~~~-~~~~~~~~~p~ivv~~k~D~~~~~~ 132 (139)
++.++.....|... +........|+++++||+|+.....
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~ 119 (157)
T cd00882 80 DRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERV 119 (157)
T ss_pred CHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccc
Confidence 99998888877322 2333356899999999999876543
No 143
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.84 E-value=9.2e-20 Score=117.02 Aligned_cols=115 Identities=18% Similarity=0.168 Sum_probs=81.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEEC-CcEEEEEEEeCCCcccccccchhhhcCCCEEEEEE
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVN-DATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY 90 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~ 90 (139)
.|+++|++|+|||||+++|...++.....+....+.....+..+ .....+.+|||||++.+...+...+..+|++++|+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~ 81 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV 81 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence 48999999999999999999887665433333333322333332 13578999999999888888888889999999999
Q ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCC
Q 032487 91 DITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDA 130 (139)
Q Consensus 91 ~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~ 130 (139)
|+++...... ...+..+.. .+.|+++|+||+|+.+.
T Consensus 82 d~~~~~~~~~-~~~~~~~~~---~~~p~ivv~NK~Dl~~~ 117 (168)
T cd01887 82 AADDGVMPQT-IEAIKLAKA---ANVPFIVALNKIDKPNA 117 (168)
T ss_pred ECCCCccHHH-HHHHHHHHH---cCCCEEEEEEceecccc
Confidence 9987432111 112222332 46799999999998743
No 144
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.84 E-value=4.3e-20 Score=130.18 Aligned_cols=122 Identities=23% Similarity=0.134 Sum_probs=87.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccc----cccc---hhhhcCC
Q 032487 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERY----HSLA---PMYYRGA 83 (139)
Q Consensus 11 ~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~----~~~~---~~~~~~~ 83 (139)
..|.|+|.|++|||||++++.+.+......+..........+.+.+ ..++.+||+||.-+. ..+. ..+++.+
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~-~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a 237 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDD-YKSFVIADIPGLIEGASEGAGLGHRFLKHIERT 237 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCC-CcEEEEEeCCCccCCCCccccHHHHHHHHhhhc
Confidence 4689999999999999999998654322223222233333444422 256899999997321 1122 2345679
Q ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEeCCCCcCCcCC
Q 032487 84 AAAIIVYDITNQASFERAKKWVQELQAQGN--PNMVMALAGNKADLLDARKV 133 (139)
Q Consensus 84 ~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~~k~D~~~~~~v 133 (139)
+++++|+|+++.++++.++.|...+..+.. ...|+++|+||+|+.+...+
T Consensus 238 ~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~ 289 (335)
T PRK12299 238 RLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEE 289 (335)
T ss_pred CEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhH
Confidence 999999999988889999999999887643 47899999999999765433
No 145
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.84 E-value=1.1e-19 Score=116.01 Aligned_cols=112 Identities=17% Similarity=0.147 Sum_probs=75.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC---CCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEEEE
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKGQ---FIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAII 88 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 88 (139)
.|+++|++++|||||+++|.+.. +.....+..+.+.......... ...+.+|||||++.+.......+.++|++++
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~ 80 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVLL 80 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEEE
Confidence 58999999999999999999642 2222222223333333344432 3579999999998886655667889999999
Q ss_pred EEECCC---HHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCC
Q 032487 89 VYDITN---QASFERAKKWVQELQAQGNPNMVMALAGNKADLLDA 130 (139)
Q Consensus 89 v~~~~~---~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~ 130 (139)
|+|+++ +.+.+.+ ..+... ...|+++++||+|+.+.
T Consensus 81 V~d~~~~~~~~~~~~~----~~~~~~--~~~~~ilv~NK~Dl~~~ 119 (164)
T cd04171 81 VVAADEGIMPQTREHL----EILELL--GIKRGLVVLTKADLVDE 119 (164)
T ss_pred EEECCCCccHhHHHHH----HHHHHh--CCCcEEEEEECccccCH
Confidence 999987 3333322 222222 12489999999999754
No 146
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.83 E-value=3.8e-20 Score=112.87 Aligned_cols=122 Identities=25% Similarity=0.371 Sum_probs=100.4
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEEE
Q 032487 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (139)
Q Consensus 8 ~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 87 (139)
.+.+||+++|..++|||||+..|.+.+... ..++.|+ .++.+.+.+ .+++.+||.+|+...+..|..++.+.|++|
T Consensus 15 ~rEirilllGldnAGKTT~LKqL~sED~~h-ltpT~GF--n~k~v~~~g-~f~LnvwDiGGqr~IRpyWsNYyenvd~lI 90 (185)
T KOG0074|consen 15 RREIRILLLGLDNAGKTTFLKQLKSEDPRH-LTPTNGF--NTKKVEYDG-TFHLNVWDIGGQRGIRPYWSNYYENVDGLI 90 (185)
T ss_pred cceEEEEEEecCCCcchhHHHHHccCChhh-ccccCCc--ceEEEeecC-cEEEEEEecCCccccchhhhhhhhccceEE
Confidence 678999999999999999999999776543 5667774 455555654 589999999999999999999999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHH-hCCCCCeEEEEEeCCCCcCCcCC
Q 032487 88 IVYDITNQASFERAKKWVQELQA-QGNPNMVMALAGNKADLLDARKV 133 (139)
Q Consensus 88 ~v~~~~~~~s~~~~~~~~~~~~~-~~~~~~p~ivv~~k~D~~~~~~v 133 (139)
+|+|.+|+..|+++..-+-.+.. ..-..+|+++.+||.|+..+..+
T Consensus 91 yVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~ 137 (185)
T KOG0074|consen 91 YVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKV 137 (185)
T ss_pred EEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcch
Confidence 99999999999987755555544 33468999999999998765443
No 147
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.82 E-value=2.8e-19 Score=130.16 Aligned_cols=116 Identities=21% Similarity=0.202 Sum_probs=84.7
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHhCCCC-cccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccc--------hh
Q 032487 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFI-EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLA--------PM 78 (139)
Q Consensus 8 ~~~~ki~i~G~~~~GKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~--------~~ 78 (139)
...+||+++|++|+|||||+|+|.+.... ....+..+.++....+.+++ ..+.+|||||........ ..
T Consensus 201 ~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g--~~v~l~DTaG~~~~~~~ie~~gi~~~~~ 278 (442)
T TIGR00450 201 DDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNG--ILIKLLDTAGIREHADFVERLGIEKSFK 278 (442)
T ss_pred hcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECC--EEEEEeeCCCcccchhHHHHHHHHHHHH
Confidence 45689999999999999999999986532 22233334445555566665 667999999986543321 34
Q ss_pred hhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCC
Q 032487 79 YYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDA 130 (139)
Q Consensus 79 ~~~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~ 130 (139)
+++++|++++|+|++++.+++.. |+..+.. .+.|+++|+||+|+.+.
T Consensus 279 ~~~~aD~il~V~D~s~~~s~~~~--~l~~~~~---~~~piIlV~NK~Dl~~~ 325 (442)
T TIGR00450 279 AIKQADLVIYVLDASQPLTKDDF--LIIDLNK---SKKPFILVLNKIDLKIN 325 (442)
T ss_pred HHhhCCEEEEEEECCCCCChhHH--HHHHHhh---CCCCEEEEEECccCCCc
Confidence 67889999999999988776654 6555542 36799999999998653
No 148
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=99.82 E-value=5.8e-20 Score=113.72 Aligned_cols=123 Identities=26% Similarity=0.593 Sum_probs=110.8
Q ss_pred CCcceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCE
Q 032487 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 85 (139)
Q Consensus 6 ~~~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ 85 (139)
++.-.+|+-++|++..|||||+-.+.+.++..++..+.|.++.-+++.+.+..+.|.+||.+|++++....+....++-+
T Consensus 16 ~n~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsva 95 (205)
T KOG1673|consen 16 SNLVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVA 95 (205)
T ss_pred ccceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEE
Confidence 34558899999999999999999999999888889999999999999999999999999999999999988888899999
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcC
Q 032487 86 AIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLD 129 (139)
Q Consensus 86 ~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~ 129 (139)
++++||...+.++..+.+|.+..+...+..+|+ +||||-|+.=
T Consensus 96 IlFmFDLt~r~TLnSi~~WY~QAr~~NktAiPi-lvGTKyD~fi 138 (205)
T KOG1673|consen 96 ILFMFDLTRRSTLNSIKEWYRQARGLNKTAIPI-LVGTKYDLFI 138 (205)
T ss_pred EEEEEecCchHHHHHHHHHHHHHhccCCccceE-EeccchHhhh
Confidence 999999999999999999999988876666665 5699999743
No 149
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.82 E-value=2e-20 Score=114.66 Aligned_cols=117 Identities=29% Similarity=0.497 Sum_probs=97.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEEEEE
Q 032487 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIV 89 (139)
Q Consensus 10 ~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v 89 (139)
+..+.++|..++|||||+|.+..+.+.....|+.|+. .+ .++.....+.+||.+|+..++..|..+.++++++++|
T Consensus 20 emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfn--mr--k~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~ 95 (186)
T KOG0075|consen 20 EMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFN--MR--KVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYV 95 (186)
T ss_pred eeeEEEEeeccCCcceEEEEEeeccchhhhcccccce--eE--EeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEE
Confidence 5678999999999999999999888877777777743 33 3333448899999999999999999999999999999
Q ss_pred EECCCHHHHHHHHHHHHH-HHHhCCCCCeEEEEEeCCCCcCC
Q 032487 90 YDITNQASFERAKKWVQE-LQAQGNPNMVMALAGNKADLLDA 130 (139)
Q Consensus 90 ~~~~~~~s~~~~~~~~~~-~~~~~~~~~p~ivv~~k~D~~~~ 130 (139)
+|+.|++.++..+.-+.. +.+....+.|++++|||.|++++
T Consensus 96 VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~A 137 (186)
T KOG0075|consen 96 VDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGA 137 (186)
T ss_pred eecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCccc
Confidence 999999888877654444 44444578999999999999876
No 150
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.81 E-value=4e-19 Score=112.91 Aligned_cols=111 Identities=17% Similarity=0.124 Sum_probs=79.3
Q ss_pred EEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCccccccc------chhhhc--CCCEE
Q 032487 15 LLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSL------APMYYR--GAAAA 86 (139)
Q Consensus 15 i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~------~~~~~~--~~~~~ 86 (139)
++|.+|+|||||++++.+........+..+.+.....+..++ ..+.+|||||+..+... +..++. .+|++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v 78 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI 78 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence 589999999999999998765444445444455555566655 57899999998766542 344454 89999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCCcCC
Q 032487 87 IIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKV 133 (139)
Q Consensus 87 i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~~~v 133 (139)
++|+|..++... ..+...+.. .+.|+++|+||+|+.+...+
T Consensus 79 i~v~d~~~~~~~---~~~~~~~~~---~~~~~iiv~NK~Dl~~~~~~ 119 (158)
T cd01879 79 VNVVDATNLERN---LYLTLQLLE---LGLPVVVALNMIDEAEKRGI 119 (158)
T ss_pred EEEeeCCcchhH---HHHHHHHHH---cCCCEEEEEehhhhcccccc
Confidence 999999886542 234333333 36899999999999765433
No 151
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.81 E-value=5.4e-19 Score=112.60 Aligned_cols=130 Identities=32% Similarity=0.614 Sum_probs=114.1
Q ss_pred CCCCCCCcceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhh
Q 032487 1 MATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYY 80 (139)
Q Consensus 1 ~~~~~~~~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~ 80 (139)
|.++......+|++++|..|.|||+++++.+-+++..++.++.|.........-+.+.++|..|||.|++.+......++
T Consensus 1 M~~p~~~~~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyy 80 (216)
T KOG0096|consen 1 MTSPPQQGLTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYY 80 (216)
T ss_pred CCCCccccceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccE
Confidence 55666667789999999999999999999999999999999999887666555454569999999999999999999998
Q ss_pred cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCCc
Q 032487 81 RGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131 (139)
Q Consensus 81 ~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~~ 131 (139)
-+...++++||+..+-++..+.+|.+.+.+.+ .++|+++.|||.|..+..
T Consensus 81 I~~qcAiimFdVtsr~t~~n~~rwhrd~~rv~-~NiPiv~cGNKvDi~~r~ 130 (216)
T KOG0096|consen 81 IQGQCAIIMFDVTSRFTYKNVPRWHRDLVRVR-ENIPIVLCGNKVDIKARK 130 (216)
T ss_pred EecceeEEEeeeeehhhhhcchHHHHHHHHHh-cCCCeeeeccceeccccc
Confidence 89999999999999999999999999998874 469999999999986653
No 152
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.80 E-value=4e-19 Score=114.76 Aligned_cols=118 Identities=21% Similarity=0.146 Sum_probs=80.2
Q ss_pred EEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCccc----ccccc---hhhhcCCCEEE
Q 032487 15 LLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER----YHSLA---PMYYRGAAAAI 87 (139)
Q Consensus 15 i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~----~~~~~---~~~~~~~~~~i 87 (139)
++|++|+|||||+++|.+........+..........+.+++ ...+.+||+||... .+.+. ...+..+|+++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii 79 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPD-GARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAIL 79 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCC-CCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEE
Confidence 589999999999999998764211111111222223333441 36789999999732 22222 23467899999
Q ss_pred EEEECCCH------HHHHHHHHHHHHHHHhCC-------CCCeEEEEEeCCCCcCCcCC
Q 032487 88 IVYDITNQ------ASFERAKKWVQELQAQGN-------PNMVMALAGNKADLLDARKV 133 (139)
Q Consensus 88 ~v~~~~~~------~s~~~~~~~~~~~~~~~~-------~~~p~ivv~~k~D~~~~~~v 133 (139)
+|+|+.++ .+++..+.|...+..... ...|+++|+||+|+......
T Consensus 80 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~ 138 (176)
T cd01881 80 HVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEEL 138 (176)
T ss_pred EEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHH
Confidence 99999987 578778888777765432 37899999999999765443
No 153
>PRK11058 GTPase HflX; Provisional
Probab=99.80 E-value=9.8e-19 Score=126.78 Aligned_cols=118 Identities=24% Similarity=0.208 Sum_probs=83.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccc--cccch------hhhcC
Q 032487 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERY--HSLAP------MYYRG 82 (139)
Q Consensus 11 ~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~--~~~~~------~~~~~ 82 (139)
.+|+++|.+|+|||||+|+|.+.+......+..+.+.....+...+. ..+.+|||+|.... ...+. ..+..
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~-~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ 276 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADV-GETVLADTVGFIRHLPHDLVAAFKATLQETRQ 276 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCC-CeEEEEecCcccccCCHHHHHHHHHHHHHhhc
Confidence 58999999999999999999987654322333333334444544432 26789999997321 11111 23578
Q ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcC
Q 032487 83 AAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLD 129 (139)
Q Consensus 83 ~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~ 129 (139)
+|++++|+|++++.+++.+..|...+......+.|+++|+||+|+.+
T Consensus 277 ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~ 323 (426)
T PRK11058 277 ATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLD 323 (426)
T ss_pred CCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCC
Confidence 99999999999998877776555555554345789999999999864
No 154
>PRK04213 GTP-binding protein; Provisional
Probab=99.80 E-value=1.4e-19 Score=119.68 Aligned_cols=115 Identities=21% Similarity=0.217 Sum_probs=74.5
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCC-----------ccccccc
Q 032487 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAG-----------QERYHSL 75 (139)
Q Consensus 7 ~~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g-----------~~~~~~~ 75 (139)
+...++|+++|++|+|||||+++|.+..+.....+ +.++....+... .+.+||||| ++.++..
T Consensus 6 ~~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~--~~t~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 79 (201)
T PRK04213 6 PDRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRP--GVTRKPNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKDE 79 (201)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCC--ceeeCceEEeec----ceEEEeCCccccccccCHHHHHHHHHH
Confidence 34678999999999999999999998776543333 334444433333 589999999 4555555
Q ss_pred chhhhc----CCCEEEEEEECCCHHHH-H---------HHHHHHHHHHHhCCCCCeEEEEEeCCCCcCC
Q 032487 76 APMYYR----GAAAAIIVYDITNQASF-E---------RAKKWVQELQAQGNPNMVMALAGNKADLLDA 130 (139)
Q Consensus 76 ~~~~~~----~~~~~i~v~~~~~~~s~-~---------~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~ 130 (139)
+..++. .++++++|+|..+...+ + ....+...+. ..+.|+++|+||+|+.+.
T Consensus 80 ~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~p~iiv~NK~Dl~~~ 145 (201)
T PRK04213 80 IVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLR---ELGIPPIVAVNKMDKIKN 145 (201)
T ss_pred HHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHH---HcCCCeEEEEECccccCc
Confidence 444443 45788888887543221 0 0011222222 246899999999998654
No 155
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.80 E-value=8.6e-19 Score=128.12 Aligned_cols=115 Identities=18% Similarity=0.183 Sum_probs=82.8
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHhCCCC-cccccceeeEEEEEEEEECCcEEEEEEEeCCCccccccc--------chhh
Q 032487 9 INAKLVLLGDVGAGKSSLVLRFVKGQFI-EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSL--------APMY 79 (139)
Q Consensus 9 ~~~ki~i~G~~~~GKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~--------~~~~ 79 (139)
..++|+++|.+|+|||||+|+|.+.+.. ....+....++....+..++ ..+.+|||+|...+... ....
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~i~l~DT~G~~~~~~~ie~~gi~~~~~~ 291 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDG--IPLRLIDTAGIRETDDEVEKIGIERSREA 291 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECC--eEEEEEeCCCCCCCccHHHHHHHHHHHHH
Confidence 4589999999999999999999986642 22233333344445555555 67899999998654332 1235
Q ss_pred hcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCCc
Q 032487 80 YRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131 (139)
Q Consensus 80 ~~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~~ 131 (139)
+..+|++++|+|++++.+++....|.. ..+.|+++|+||+|+.+..
T Consensus 292 ~~~aD~il~VvD~s~~~s~~~~~~l~~------~~~~piiiV~NK~DL~~~~ 337 (449)
T PRK05291 292 IEEADLVLLVLDASEPLTEEDDEILEE------LKDKPVIVVLNKADLTGEI 337 (449)
T ss_pred HHhCCEEEEEecCCCCCChhHHHHHHh------cCCCCcEEEEEhhhccccc
Confidence 788999999999999877765444432 3468999999999997643
No 156
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.80 E-value=2.5e-18 Score=108.97 Aligned_cols=113 Identities=19% Similarity=0.195 Sum_probs=78.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCc-ccccceeeEEEEEEEEECCcEEEEEEEeCCCccccccc--------chhhhc
Q 032487 11 AKLVLLGDVGAGKSSLVLRFVKGQFIE-FQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSL--------APMYYR 81 (139)
Q Consensus 11 ~ki~i~G~~~~GKssli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~--------~~~~~~ 81 (139)
++|+++|++|+|||||++++.+..... ...+..............+ .++.+|||||...+... ....+.
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~ 79 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGG--IPVRLIDTAGIRETEDEIEKIGIERAREAIE 79 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCC--EEEEEEECCCcCCCcchHHHHHHHHHHHHHh
Confidence 589999999999999999999876421 1222222233333344443 67899999997554321 123567
Q ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCCc
Q 032487 82 GAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131 (139)
Q Consensus 82 ~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~~ 131 (139)
.+|++++|+|++++.+....+.+.. ....|+++|+||+|+.+..
T Consensus 80 ~~~~~v~v~d~~~~~~~~~~~~~~~------~~~~~vi~v~nK~D~~~~~ 123 (157)
T cd04164 80 EADLVLFVIDASRGLDEEDLEILEL------PADKPIIVVLNKSDLLPDS 123 (157)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHh------hcCCCEEEEEEchhcCCcc
Confidence 8999999999998776655443322 3468999999999987644
No 157
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.80 E-value=7.9e-19 Score=129.21 Aligned_cols=114 Identities=25% Similarity=0.204 Sum_probs=79.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCCCCc-ccccceeeEEEEEEEEECCcEEEEEEEeCCCccc--------ccccchhhh
Q 032487 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIE-FQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER--------YHSLAPMYY 80 (139)
Q Consensus 10 ~~ki~i~G~~~~GKssli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~--------~~~~~~~~~ 80 (139)
..+|+|+|.+|+|||||+|+|.+..... ...+..+.+........++ ..+.+|||||.+. +......++
T Consensus 38 ~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~ 115 (472)
T PRK03003 38 LPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNG--RRFTVVDTGGWEPDAKGLQASVAEQAEVAM 115 (472)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECC--cEEEEEeCCCcCCcchhHHHHHHHHHHHHH
Confidence 4789999999999999999999865432 2223223333334444454 5688999999762 223344568
Q ss_pred cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcC
Q 032487 81 RGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLD 129 (139)
Q Consensus 81 ~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~ 129 (139)
..+|++++|+|++++.++.. ..+...+.. .+.|+++|+||+|+..
T Consensus 116 ~~aD~il~VvD~~~~~s~~~-~~i~~~l~~---~~~piilV~NK~Dl~~ 160 (472)
T PRK03003 116 RTADAVLFVVDATVGATATD-EAVARVLRR---SGKPVILAANKVDDER 160 (472)
T ss_pred HhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECccCCc
Confidence 89999999999998755432 344444443 4689999999999864
No 158
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.80 E-value=1.2e-19 Score=113.78 Aligned_cols=96 Identities=22% Similarity=0.259 Sum_probs=68.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcc-----cccccchhhhcCCCEE
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQE-----RYHSLAPMYYRGAAAA 86 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~-----~~~~~~~~~~~~~~~~ 86 (139)
||+++|++|+|||||+++|.+.... +.++.+. .+.. .+||+||+. .+..... .++++|++
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~t~~~-------~~~~-----~~iDt~G~~~~~~~~~~~~~~-~~~~ad~v 66 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL--YKKTQAV-------EYND-----GAIDTPGEYVENRRLYSALIV-TAADADVI 66 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc--cccceeE-------EEcC-----eeecCchhhhhhHHHHHHHHH-HhhcCCEE
Confidence 8999999999999999999977542 2222222 2221 689999972 2333322 47899999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcC
Q 032487 87 IIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLD 129 (139)
Q Consensus 87 i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~ 129 (139)
++|||++++.++.. ..|...+ ..|+++|+||+|+.+
T Consensus 67 ilv~d~~~~~s~~~-~~~~~~~------~~p~ilv~NK~Dl~~ 102 (142)
T TIGR02528 67 ALVQSATDPESRFP-PGFASIF------VKPVIGLVTKIDLAE 102 (142)
T ss_pred EEEecCCCCCcCCC-hhHHHhc------cCCeEEEEEeeccCC
Confidence 99999999888654 3443321 238999999999865
No 159
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.79 E-value=1.7e-18 Score=121.94 Aligned_cols=120 Identities=22% Similarity=0.124 Sum_probs=83.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCccccc----ccch---hhhcC
Q 032487 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYH----SLAP---MYYRG 82 (139)
Q Consensus 10 ~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~----~~~~---~~~~~ 82 (139)
...|+++|.+++|||||+++|.+.......++..........+.+++ ..++.+||+||..... .+.. .+++.
T Consensus 157 ~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~-~~~~~i~D~PGli~~a~~~~gLg~~flrhier 235 (329)
T TIGR02729 157 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDD-GRSFVIADIPGLIEGASEGAGLGHRFLKHIER 235 (329)
T ss_pred cccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCC-ceEEEEEeCCCcccCCcccccHHHHHHHHHHh
Confidence 35789999999999999999998754322222222222233334432 3678999999974221 2222 23567
Q ss_pred CCEEEEEEECCCH---HHHHHHHHHHHHHHHhCC--CCCeEEEEEeCCCCcCC
Q 032487 83 AAAAIIVYDITNQ---ASFERAKKWVQELQAQGN--PNMVMALAGNKADLLDA 130 (139)
Q Consensus 83 ~~~~i~v~~~~~~---~s~~~~~~~~~~~~~~~~--~~~p~ivv~~k~D~~~~ 130 (139)
++++++|+|+++. ++++.+..|.+.+..... ...|+++|+||+|+.+.
T Consensus 236 ad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~ 288 (329)
T TIGR02729 236 TRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDE 288 (329)
T ss_pred hCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCCh
Confidence 9999999999986 678888888887776532 47899999999999765
No 160
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.79 E-value=2.5e-18 Score=129.14 Aligned_cols=117 Identities=17% Similarity=0.207 Sum_probs=87.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCC-------CCcccc------cceeeEEEEEEEEE-----CCcEEEEEEEeCCCccc
Q 032487 10 NAKLVLLGDVGAGKSSLVLRFVKGQ-------FIEFQE------STIGAAFFSQTLAV-----NDATVKFEIWDTAGQER 71 (139)
Q Consensus 10 ~~ki~i~G~~~~GKssli~~l~~~~-------~~~~~~------~~~~~~~~~~~~~~-----~~~~~~~~i~d~~g~~~ 71 (139)
.-+++++|+.++|||||+++|+... +...+. ...|.++....+.. ++..+.+.+|||||+.+
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d 82 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD 82 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence 4589999999999999999998642 111111 12355554443332 45568999999999999
Q ss_pred ccccchhhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCC
Q 032487 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDA 130 (139)
Q Consensus 72 ~~~~~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~ 130 (139)
|...+..++..+|++++|+|+++..+......|...+. .++|+++|+||+|+.+.
T Consensus 83 F~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~----~~ipiIiViNKiDl~~~ 137 (595)
T TIGR01393 83 FSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE----NDLEIIPVINKIDLPSA 137 (595)
T ss_pred HHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH----cCCCEEEEEECcCCCcc
Confidence 98888889999999999999998766666666654332 35789999999998653
No 161
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.79 E-value=2e-18 Score=119.00 Aligned_cols=111 Identities=18% Similarity=0.104 Sum_probs=74.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCccc--ccceeeEEEEEEEEECCcEEEEEEEeCCCcccccc--------cchhhhc
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQ--ESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHS--------LAPMYYR 81 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~--------~~~~~~~ 81 (139)
+|+++|.+|+|||||+|+|.+.+..... ..+.. + ....+...+ ..++.+|||||...... .....+.
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr-~-~i~~i~~~~-~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~ 78 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTR-N-RISGIHTTG-ASQIIFIDTPGFHEKKHSLNRLMMKEARSAIG 78 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCccc-C-cEEEEEEcC-CcEEEEEECcCCCCCcchHHHHHHHHHHHHHh
Confidence 6899999999999999999987654221 11211 1 122222222 25689999999754311 1234578
Q ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCC
Q 032487 82 GAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDA 130 (139)
Q Consensus 82 ~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~ 130 (139)
.+|++++|+|+++..+.+ ..++..+.. .+.|+++|+||+|+.+.
T Consensus 79 ~aDvvl~VvD~~~~~~~~--~~i~~~l~~---~~~p~ilV~NK~Dl~~~ 122 (270)
T TIGR00436 79 GVDLILFVVDSDQWNGDG--EFVLTKLQN---LKRPVVLTRNKLDNKFK 122 (270)
T ss_pred hCCEEEEEEECCCCCchH--HHHHHHHHh---cCCCEEEEEECeeCCCH
Confidence 899999999999876654 344444443 36899999999998643
No 162
>PRK15494 era GTPase Era; Provisional
Probab=99.79 E-value=1.7e-18 Score=122.59 Aligned_cols=116 Identities=19% Similarity=0.306 Sum_probs=76.8
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceee--EEEEEEEEECCcEEEEEEEeCCCcccc-cccc-------
Q 032487 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGA--AFFSQTLAVNDATVKFEIWDTAGQERY-HSLA------- 76 (139)
Q Consensus 7 ~~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~d~~g~~~~-~~~~------- 76 (139)
+.+..+|+++|.+|+|||||+|+|.+..+... .+..++ +.....+..++ .++.+|||||.... ..+.
T Consensus 49 ~~k~~kV~ivG~~nvGKSTLin~l~~~k~~iv-s~k~~tTr~~~~~~~~~~~--~qi~~~DTpG~~~~~~~l~~~~~r~~ 125 (339)
T PRK15494 49 NQKTVSVCIIGRPNSGKSTLLNRIIGEKLSIV-TPKVQTTRSIITGIITLKD--TQVILYDTPGIFEPKGSLEKAMVRCA 125 (339)
T ss_pred ccceeEEEEEcCCCCCHHHHHHHHhCCceeec-cCCCCCccCcEEEEEEeCC--eEEEEEECCCcCCCcccHHHHHHHHH
Confidence 35667999999999999999999998776421 112222 22233344444 57899999998432 2221
Q ss_pred hhhhcCCCEEEEEEECCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEeCCCCcCC
Q 032487 77 PMYYRGAAAAIIVYDITNQASFERA-KKWVQELQAQGNPNMVMALAGNKADLLDA 130 (139)
Q Consensus 77 ~~~~~~~~~~i~v~~~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~~k~D~~~~ 130 (139)
...+.++|++++|+|..+ ++... ..|+..+... +.|.++|+||+|+.+.
T Consensus 126 ~~~l~~aDvil~VvD~~~--s~~~~~~~il~~l~~~---~~p~IlViNKiDl~~~ 175 (339)
T PRK15494 126 WSSLHSADLVLLIIDSLK--SFDDITHNILDKLRSL---NIVPIFLLNKIDIESK 175 (339)
T ss_pred HHHhhhCCEEEEEEECCC--CCCHHHHHHHHHHHhc---CCCEEEEEEhhcCccc
Confidence 124678999999999765 33343 3455555433 4567889999998653
No 163
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.79 E-value=3.3e-18 Score=111.32 Aligned_cols=117 Identities=20% Similarity=0.282 Sum_probs=77.5
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcc----------cccccc
Q 032487 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQE----------RYHSLA 76 (139)
Q Consensus 7 ~~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~----------~~~~~~ 76 (139)
+....+|+|+|++|+|||||++++.+..+...+.++.+.+.....+..++ .+.+||+||.. .+....
T Consensus 15 ~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~ 91 (179)
T TIGR03598 15 PDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQKLI 91 (179)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHHHHH
Confidence 35678999999999999999999998764333444555444443333332 58999999953 222222
Q ss_pred hhhhc---CCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCC
Q 032487 77 PMYYR---GAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDA 130 (139)
Q Consensus 77 ~~~~~---~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~ 130 (139)
..+++ .++++++|+|++++-+.... .++..+.. ...|+++++||+|+.++
T Consensus 92 ~~~l~~~~~~~~ii~vvd~~~~~~~~~~-~~~~~~~~---~~~pviiv~nK~D~~~~ 144 (179)
T TIGR03598 92 EEYLEKRENLKGVVLLMDIRHPLKELDL-EMLEWLRE---RGIPVLIVLTKADKLKK 144 (179)
T ss_pred HHHHHhChhhcEEEEEecCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECcccCCH
Confidence 23343 35799999999875443333 22333332 36899999999998654
No 164
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.78 E-value=3.1e-18 Score=128.25 Aligned_cols=117 Identities=17% Similarity=0.193 Sum_probs=85.0
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEEE
Q 032487 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (139)
Q Consensus 8 ~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 87 (139)
.+..+++++|+.++|||||+++|.+..+.....+.++.+.....+..++. ..+.+|||||++.|...+...+..+|+++
T Consensus 85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~-~~i~~iDTPGhe~F~~~r~rga~~aDiaI 163 (587)
T TIGR00487 85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDG-KMITFLDTPGHEAFTSMRARGAKVTDIVV 163 (587)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCC-cEEEEEECCCCcchhhHHHhhhccCCEEE
Confidence 46789999999999999999999987766544443433433444444332 27899999999999988888889999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcC
Q 032487 88 IVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLD 129 (139)
Q Consensus 88 ~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~ 129 (139)
+|+|+++...-... +.+..+. ..+.|+++++||+|+.+
T Consensus 164 LVVda~dgv~~qT~-e~i~~~~---~~~vPiIVviNKiDl~~ 201 (587)
T TIGR00487 164 LVVAADDGVMPQTI-EAISHAK---AANVPIIVAINKIDKPE 201 (587)
T ss_pred EEEECCCCCCHhHH-HHHHHHH---HcCCCEEEEEECccccc
Confidence 99999874321111 1222222 34689999999999864
No 165
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.78 E-value=5.2e-18 Score=110.63 Aligned_cols=112 Identities=20% Similarity=0.170 Sum_probs=80.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCcccccc----------------eeeEEEEEEEEECCcEEEEEEEeCCCccccccc
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQEST----------------IGAAFFSQTLAVNDATVKFEIWDTAGQERYHSL 75 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~ 75 (139)
+|+++|.+|+|||||++.|.+.......... ............. ...+.+||+||...+...
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~liDtpG~~~~~~~ 78 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWP--DRRVNFIDTPGHEDFSSE 78 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeC--CEEEEEEeCCCcHHHHHH
Confidence 4899999999999999999987655422111 1111112222223 478999999999888887
Q ss_pred chhhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcC
Q 032487 76 APMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLD 129 (139)
Q Consensus 76 ~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~ 129 (139)
+..++..+|++++|+|..++.+.. ...++..+.. ...|+++++||+|+..
T Consensus 79 ~~~~~~~~d~~i~v~d~~~~~~~~-~~~~~~~~~~---~~~~i~iv~nK~D~~~ 128 (189)
T cd00881 79 VIRGLSVSDGAILVVDANEGVQPQ-TREHLRIARE---GGLPIIVAINKIDRVG 128 (189)
T ss_pred HHHHHHhcCEEEEEEECCCCCcHH-HHHHHHHHHH---CCCCeEEEEECCCCcc
Confidence 888889999999999998765433 2334444443 4789999999999875
No 166
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.78 E-value=3.8e-18 Score=107.94 Aligned_cols=115 Identities=21% Similarity=0.205 Sum_probs=78.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccc------cchhhh--cC
Q 032487 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHS------LAPMYY--RG 82 (139)
Q Consensus 11 ~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~------~~~~~~--~~ 82 (139)
++|+++|.||||||||+|+|.+.+......+....+.....+..++ ..+.++|+||.-.... +...++ .+
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~--~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~ 78 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGD--QQVELVDLPGIYSLSSKSEEERVARDYLLSEK 78 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT--EEEEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecC--ceEEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence 5899999999999999999999886544455555566666666666 7799999999633222 223333 68
Q ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCCcCC
Q 032487 83 AAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKV 133 (139)
Q Consensus 83 ~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~~~v 133 (139)
+|+++.|+|+++. ++-.++...+.. .+.|++++.||+|+..+..+
T Consensus 79 ~D~ii~VvDa~~l---~r~l~l~~ql~e---~g~P~vvvlN~~D~a~~~g~ 123 (156)
T PF02421_consen 79 PDLIIVVVDATNL---ERNLYLTLQLLE---LGIPVVVVLNKMDEAERKGI 123 (156)
T ss_dssp SSEEEEEEEGGGH---HHHHHHHHHHHH---TTSSEEEEEETHHHHHHTTE
T ss_pred CCEEEEECCCCCH---HHHHHHHHHHHH---cCCCEEEEEeCHHHHHHcCC
Confidence 9999999999763 333344444443 36899999999998765543
No 167
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.77 E-value=7.7e-18 Score=124.01 Aligned_cols=116 Identities=22% Similarity=0.233 Sum_probs=81.5
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHhCCCC-cccccceeeEEEEEEEEECCcEEEEEEEeCCCcc----------cccccc
Q 032487 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFI-EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQE----------RYHSLA 76 (139)
Q Consensus 8 ~~~~ki~i~G~~~~GKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~----------~~~~~~ 76 (139)
....+|+++|.+|+|||||+|+|++.... ....+..+.+.....+..++ ..+.+|||||.. .+....
T Consensus 209 ~~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~--~~~~l~DTaG~~~~~~~~~~~e~~~~~~ 286 (472)
T PRK03003 209 GGPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGG--KTWRFVDTAGLRRRVKQASGHEYYASLR 286 (472)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECC--EEEEEEECCCccccccccchHHHHHHHH
Confidence 34689999999999999999999987642 22333333344444555665 456899999953 222221
Q ss_pred -hhhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcC
Q 032487 77 -PMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLD 129 (139)
Q Consensus 77 -~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~ 129 (139)
..+++.+|++++|+|++++.++...+ ++..+.. .+.|+++|+||+|+.+
T Consensus 287 ~~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~---~~~piIiV~NK~Dl~~ 336 (472)
T PRK03003 287 THAAIEAAEVAVVLIDASEPISEQDQR-VLSMVIE---AGRALVLAFNKWDLVD 336 (472)
T ss_pred HHHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcccCC
Confidence 23568899999999999987766553 3444432 4689999999999965
No 168
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.77 E-value=7.6e-18 Score=129.11 Aligned_cols=118 Identities=17% Similarity=0.162 Sum_probs=85.3
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEE
Q 032487 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 86 (139)
Q Consensus 7 ~~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 86 (139)
..+...|+++|+.++|||||+++|....+.......+..+.....+..++ ..+.+|||||++.|..++...+..+|++
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~--~~ItfiDTPGhe~F~~m~~rga~~aDia 364 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG--GKITFLDTPGHEAFTAMRARGAQVTDIV 364 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC--EEEEEEECCCCccchhHHHhhhhhCCEE
Confidence 45778999999999999999999998766544333333333333344444 6799999999999998888888999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCC
Q 032487 87 IIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDA 130 (139)
Q Consensus 87 i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~ 130 (139)
++|+|+++...-.....| ..+. ..++|+++++||+|+.+.
T Consensus 365 ILVVdAddGv~~qT~e~i-~~a~---~~~vPiIVviNKiDl~~a 404 (787)
T PRK05306 365 VLVVAADDGVMPQTIEAI-NHAK---AAGVPIIVAINKIDKPGA 404 (787)
T ss_pred EEEEECCCCCCHhHHHHH-HHHH---hcCCcEEEEEECcccccc
Confidence 999999884221111111 2222 346899999999999653
No 169
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.77 E-value=6.6e-18 Score=114.29 Aligned_cols=115 Identities=20% Similarity=0.169 Sum_probs=81.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCc--------c--------cccceeeEEEEEEEEECCcEEEEEEEeCCCccccccc
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKGQFIE--------F--------QESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSL 75 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~~~~~--------~--------~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~ 75 (139)
+|+++|+.++|||||+++|+...-.. . .....+.+.......+.+...++.+|||||+.++...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 58999999999999999998642110 0 0011222233333444445588999999999988887
Q ss_pred chhhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCC
Q 032487 76 APMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDA 130 (139)
Q Consensus 76 ~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~ 130 (139)
+..+++.+|++++|+|+.+.... ..+.+...+.. .++|+++++||+|+...
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~---~~~P~iivvNK~D~~~a 131 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQA-QTRILWRLLRK---LNIPTIIFVNKIDRAGA 131 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHH---cCCCEEEEEECccccCC
Confidence 88889999999999999886443 33455555543 36899999999998754
No 170
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.76 E-value=1.9e-17 Score=119.71 Aligned_cols=117 Identities=18% Similarity=0.110 Sum_probs=80.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCccc----ccccchh---hhcCCC
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER----YHSLAPM---YYRGAA 84 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~----~~~~~~~---~~~~~~ 84 (139)
.|.++|.|++|||||+++|++.+......+..........+.+++ ..++.+||+||... ...+... +++.++
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~-~~~~~laD~PGliega~~~~gLg~~fLrhier~~ 238 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDD-GRSFVMADIPGLIEGASEGVGLGHQFLRHIERTR 238 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeC-CceEEEEECCCCcccccccchHHHHHHHHHhhCC
Confidence 799999999999999999998764322222222222233333331 25799999999632 1122222 355699
Q ss_pred EEEEEEECCCH---HHHHHHHHHHHHHHHhCC--CCCeEEEEEeCCCCcC
Q 032487 85 AAIIVYDITNQ---ASFERAKKWVQELQAQGN--PNMVMALAGNKADLLD 129 (139)
Q Consensus 85 ~~i~v~~~~~~---~s~~~~~~~~~~~~~~~~--~~~p~ivv~~k~D~~~ 129 (139)
++++|+|+++. ++++....|...+..+.. ...|+++|+||+|+.+
T Consensus 239 llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~ 288 (424)
T PRK12297 239 VIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPE 288 (424)
T ss_pred EEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcC
Confidence 99999999864 667777788888877533 4789999999999854
No 171
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.75 E-value=2.9e-17 Score=112.87 Aligned_cols=117 Identities=15% Similarity=0.146 Sum_probs=79.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCccc--------------------ccceeeEEEEEEEEECCcEEEEEEEeCCCcc
Q 032487 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQ--------------------ESTIGAAFFSQTLAVNDATVKFEIWDTAGQE 70 (139)
Q Consensus 11 ~ki~i~G~~~~GKssli~~l~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~ 70 (139)
.+|+++|++++|||||+++|+...-.... ....+.+.......+.+...++.+|||||+.
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~ 82 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE 82 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence 57999999999999999999853211000 0011222333444445556899999999998
Q ss_pred cccccchhhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCCc
Q 032487 71 RYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131 (139)
Q Consensus 71 ~~~~~~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~~ 131 (139)
+|.......++.+|++++|+|+.+.... ....++.... ..++|+++++||+|+....
T Consensus 83 df~~~~~~~l~~aD~~IlVvda~~g~~~-~~~~i~~~~~---~~~~P~iivvNK~D~~~a~ 139 (267)
T cd04169 83 DFSEDTYRTLTAVDSAVMVIDAAKGVEP-QTRKLFEVCR---LRGIPIITFINKLDREGRD 139 (267)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCccH-HHHHHHHHHH---hcCCCEEEEEECCccCCCC
Confidence 8876666678999999999999875332 2233433333 2468999999999986653
No 172
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.75 E-value=1.5e-17 Score=109.27 Aligned_cols=115 Identities=19% Similarity=0.157 Sum_probs=72.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC----CCCc---c--cccceeeEEEEEEEE----------ECCcEEEEEEEeCCCccc
Q 032487 11 AKLVLLGDVGAGKSSLVLRFVKG----QFIE---F--QESTIGAAFFSQTLA----------VNDATVKFEIWDTAGQER 71 (139)
Q Consensus 11 ~ki~i~G~~~~GKssli~~l~~~----~~~~---~--~~~~~~~~~~~~~~~----------~~~~~~~~~i~d~~g~~~ 71 (139)
++|+++|++++|||||+++|... .+.. + ...+.+..+....+. .++....+.+|||||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 58999999999999999999973 1111 1 112233322233222 122357899999999865
Q ss_pred ccccchhhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcC
Q 032487 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLD 129 (139)
Q Consensus 72 ~~~~~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~ 129 (139)
+..........+|++++|+|+.+.......+.+. . ... .+.|+++++||+|+..
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~-~-~~~--~~~~~iiv~NK~Dl~~ 134 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV-I-GEI--LCKKLIVVLNKIDLIP 134 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH-H-HHH--cCCCEEEEEECcccCC
Confidence 4332223456789999999998754333322222 1 121 2569999999999864
No 173
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.75 E-value=1.4e-17 Score=105.61 Aligned_cols=112 Identities=18% Similarity=0.146 Sum_probs=73.7
Q ss_pred EEEcCCCCcHHHHHHHHHhCCCC-cccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccc--------cchhhhcCCC
Q 032487 14 VLLGDVGAGKSSLVLRFVKGQFI-EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHS--------LAPMYYRGAA 84 (139)
Q Consensus 14 ~i~G~~~~GKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~--------~~~~~~~~~~ 84 (139)
+++|.+|+|||||+++|.+.... ....+.............++ ..+.+|||||...+.. .....+..+|
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d 78 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGG--REFILIDTGGIEPDDEGISKEIREQAELAIEEAD 78 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECC--eEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCC
Confidence 47899999999999999976422 11122222222333334444 6799999999876543 2234578899
Q ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCCc
Q 032487 85 AAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131 (139)
Q Consensus 85 ~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~~ 131 (139)
++++++|..++.+.... .+...+.. ...|+++|+||+|+.+..
T Consensus 79 ~ii~v~d~~~~~~~~~~-~~~~~~~~---~~~piiiv~nK~D~~~~~ 121 (157)
T cd01894 79 VILFVVDGREGLTPADE-EIAKYLRK---SKKPVILVVNKVDNIKEE 121 (157)
T ss_pred EEEEEEeccccCCccHH-HHHHHHHh---cCCCEEEEEECcccCChH
Confidence 99999999875443322 22233332 258999999999987653
No 174
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.75 E-value=1.4e-17 Score=126.82 Aligned_cols=119 Identities=22% Similarity=0.280 Sum_probs=84.9
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeE--EEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCE
Q 032487 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAA--FFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 85 (139)
Q Consensus 8 ~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ 85 (139)
.+..+|+++|+.++|||||+++|....+.....+..+.+ .+...+..++....+.+|||||++.|...+...+..+|+
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDi 321 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDI 321 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCE
Confidence 467799999999999999999999876654332222222 222223333445889999999999999988888999999
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCC
Q 032487 86 AIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDA 130 (139)
Q Consensus 86 ~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~ 130 (139)
+++|+|+++......... +..+. ..++|+++++||+|+.+.
T Consensus 322 aILVVDA~dGv~~QT~E~-I~~~k---~~~iPiIVViNKiDl~~~ 362 (742)
T CHL00189 322 AILIIAADDGVKPQTIEA-INYIQ---AANVPIIVAINKIDKANA 362 (742)
T ss_pred EEEEEECcCCCChhhHHH-HHHHH---hcCceEEEEEECCCcccc
Confidence 999999987432222222 22222 346899999999998753
No 175
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.75 E-value=2.7e-17 Score=120.15 Aligned_cols=111 Identities=20% Similarity=0.148 Sum_probs=77.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCC-cccccceeeEEEEEEEEECCcEEEEEEEeCCCccc--------ccccchhhhc
Q 032487 11 AKLVLLGDVGAGKSSLVLRFVKGQFI-EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER--------YHSLAPMYYR 81 (139)
Q Consensus 11 ~ki~i~G~~~~GKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~--------~~~~~~~~~~ 81 (139)
.+|+++|.+|+|||||+|+|.+.... ....+..+.+.....+..++ ..+.+|||||.+. +......++.
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~ 79 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAIE 79 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence 58999999999999999999987642 11223333334444455555 7799999999876 2222344678
Q ss_pred CCCEEEEEEECCCHHHHH--HHHHHHHHHHHhCCCCCeEEEEEeCCCCcC
Q 032487 82 GAAAAIIVYDITNQASFE--RAKKWVQELQAQGNPNMVMALAGNKADLLD 129 (139)
Q Consensus 82 ~~~~~i~v~~~~~~~s~~--~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~ 129 (139)
.+|++++|+|+.++.+.. .+..|+. . .+.|+++|+||+|+.+
T Consensus 80 ~ad~il~vvd~~~~~~~~~~~~~~~l~---~---~~~piilv~NK~D~~~ 123 (435)
T PRK00093 80 EADVILFVVDGRAGLTPADEEIAKILR---K---SNKPVILVVNKVDGPD 123 (435)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHHHH---H---cCCcEEEEEECccCcc
Confidence 899999999998753322 2333433 2 2689999999999754
No 176
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.75 E-value=4.7e-17 Score=103.51 Aligned_cols=125 Identities=27% Similarity=0.433 Sum_probs=91.6
Q ss_pred CCCCcceeEEEEEcCCCCcHHHHHHHHHhCCCCcc-------cccc---eeeEEEEEEEEECCcEEEEEEEeCCCccccc
Q 032487 4 TGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEF-------QEST---IGAAFFSQTLAVNDATVKFEIWDTAGQERYH 73 (139)
Q Consensus 4 ~~~~~~~~ki~i~G~~~~GKssli~~l~~~~~~~~-------~~~~---~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~ 73 (139)
...+....||+++|+.++|||||+++++....... .... ..+......+.+++ +..+.+++||||++|.
T Consensus 4 ~~~k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~-~~~v~LfgtPGq~RF~ 82 (187)
T COG2229 4 AANKMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDE-DTGVHLFGTPGQERFK 82 (187)
T ss_pred ccccccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcC-cceEEEecCCCcHHHH
Confidence 34577889999999999999999999997763111 0111 11112222233332 3678999999999999
Q ss_pred ccchhhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCCcC
Q 032487 74 SLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARK 132 (139)
Q Consensus 74 ~~~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~~~ 132 (139)
.+|...++++.++++++|.+.+..+ ..++.++-+.... ..|++++.||.|+.+...
T Consensus 83 fm~~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~~--~ip~vVa~NK~DL~~a~p 138 (187)
T COG2229 83 FMWEILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSRN--PIPVVVAINKQDLFDALP 138 (187)
T ss_pred HHHHHHhCCcceEEEEEecCCCcch-HHHHHHHHHhhcc--CCCEEEEeeccccCCCCC
Confidence 9999999999999999999998877 4455555444331 299999999999998753
No 177
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.75 E-value=6.1e-17 Score=104.00 Aligned_cols=115 Identities=19% Similarity=0.234 Sum_probs=75.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCCCCcc-cccceeeEEEEEEEEECCcEEEEEEEeCCCcccccc----------c-ch
Q 032487 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEF-QESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHS----------L-AP 77 (139)
Q Consensus 10 ~~ki~i~G~~~~GKssli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~----------~-~~ 77 (139)
.++|+++|.+|+|||||++++.+...... ..+..........+..++ ..+.+||+||...... . ..
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~ 79 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDG--KKYTLIDTAGIRRKGKVEEGIEKYSVLRTL 79 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECC--eeEEEEECCCCccccchhccHHHHHHHHHH
Confidence 57899999999999999999998653221 112221122223334444 4578999999643311 0 12
Q ss_pred hhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCC
Q 032487 78 MYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDA 130 (139)
Q Consensus 78 ~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~ 130 (139)
..+..+|++++|+|++++.+.... .++..+.. .+.|+++++||+|+.+.
T Consensus 80 ~~~~~~d~vi~v~d~~~~~~~~~~-~~~~~~~~---~~~~~iiv~nK~Dl~~~ 128 (174)
T cd01895 80 KAIERADVVLLVIDATEGITEQDL-RIAGLILE---EGKALVIVVNKWDLVEK 128 (174)
T ss_pred HHHhhcCeEEEEEeCCCCcchhHH-HHHHHHHh---cCCCEEEEEeccccCCc
Confidence 245789999999999988665443 23333332 35899999999998765
No 178
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.74 E-value=1.5e-17 Score=121.19 Aligned_cols=128 Identities=22% Similarity=0.363 Sum_probs=99.0
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEE
Q 032487 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 86 (139)
Q Consensus 7 ~~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 86 (139)
-...++|+++|..||||||||-++...++.+..++......-+..+.-+ .....+.|++..++-+......++++|++
T Consensus 6 t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IPadvtPe--~vpt~ivD~ss~~~~~~~l~~EirkA~vi 83 (625)
T KOG1707|consen 6 TLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIPADVTPE--NVPTSIVDTSSDSDDRLCLRKEIRKADVI 83 (625)
T ss_pred CccceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccCCccCcC--cCceEEEecccccchhHHHHHHHhhcCEE
Confidence 3678999999999999999999999999887654433322112111112 24578999986666555557778999999
Q ss_pred EEEEECCCHHHHHHHH-HHHHHHHHhC--CCCCeEEEEEeCCCCcCCcCCCcc
Q 032487 87 IIVYDITNQASFERAK-KWVQELQAQG--NPNMVMALAGNKADLLDARKVTAE 136 (139)
Q Consensus 87 i~v~~~~~~~s~~~~~-~~~~~~~~~~--~~~~p~ivv~~k~D~~~~~~v~~~ 136 (139)
.++|+.+++.+++.+. .|+..+++.. ..+.|+|+||||+|..+..+.+.+
T Consensus 84 ~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e 136 (625)
T KOG1707|consen 84 CLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDE 136 (625)
T ss_pred EEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchh
Confidence 9999999999999976 8999999864 368999999999999887665433
No 179
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.74 E-value=1.7e-17 Score=111.14 Aligned_cols=122 Identities=19% Similarity=0.207 Sum_probs=81.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCcc--c------------ccceeeEEEE--EEEEEC--------CcEEEEEEEeCC
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKGQFIEF--Q------------ESTIGAAFFS--QTLAVN--------DATVKFEIWDTA 67 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~~~~~~--~------------~~~~~~~~~~--~~~~~~--------~~~~~~~i~d~~ 67 (139)
+|+++|+.++|||||+.+|+....... . ...-|.+..+ ....+. +..+.+.+||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 689999999999999999985431100 0 0000111111 112222 346889999999
Q ss_pred CcccccccchhhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCc-CCcCCCccc
Q 032487 68 GQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLL-DARKVTAEA 137 (139)
Q Consensus 68 g~~~~~~~~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~-~~~~v~~~e 137 (139)
|+.+|.......+..+|++++|+|+.++..... +..+..... .++|+++++||+|+. .+.+++.++
T Consensus 82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t-~~~l~~~~~---~~~p~ilviNKiD~~~~e~~~~~~~ 148 (222)
T cd01885 82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQT-ETVLRQALK---ERVKPVLVINKIDRLILELKLSPEE 148 (222)
T ss_pred CccccHHHHHHHHHhcCeeEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECCCcchhhhcCCHHH
Confidence 999998888888999999999999998655443 233333332 357899999999975 344555443
No 180
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.74 E-value=2.1e-17 Score=121.09 Aligned_cols=120 Identities=22% Similarity=0.128 Sum_probs=80.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccc----ccc---chhhhcC
Q 032487 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERY----HSL---APMYYRG 82 (139)
Q Consensus 10 ~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~----~~~---~~~~~~~ 82 (139)
...|+|+|.||+|||||+|+|.+.+......+..........+.+++ .+|.+||+||.... ..+ ...++..
T Consensus 159 ~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~--~~f~laDtPGliegas~g~gLg~~fLrhier 236 (500)
T PRK12296 159 VADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGD--TRFTVADVPGLIPGASEGKGLGLDFLRHIER 236 (500)
T ss_pred cceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECC--eEEEEEECCCCccccchhhHHHHHHHHHHHh
Confidence 45799999999999999999998754432223222333344445544 67999999996321 111 1224678
Q ss_pred CCEEEEEEECCC----HHHHHHHHHHHHHHHHhC-----------CCCCeEEEEEeCCCCcCCc
Q 032487 83 AAAAIIVYDITN----QASFERAKKWVQELQAQG-----------NPNMVMALAGNKADLLDAR 131 (139)
Q Consensus 83 ~~~~i~v~~~~~----~~s~~~~~~~~~~~~~~~-----------~~~~p~ivv~~k~D~~~~~ 131 (139)
++++++|+|+++ ++.++.+..+...+..+. ....|+++|+||+|+.+..
T Consensus 237 advLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~ 300 (500)
T PRK12296 237 CAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDAR 300 (500)
T ss_pred cCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhH
Confidence 999999999975 234555555555554432 2468999999999997654
No 181
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.74 E-value=3.3e-17 Score=109.35 Aligned_cols=113 Identities=19% Similarity=0.277 Sum_probs=79.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCccc-----------------ccceeeEEEEEEEE--E---CCcEEEEEEEeCCCc
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQ-----------------ESTIGAAFFSQTLA--V---NDATVKFEIWDTAGQ 69 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~~~~~~~-----------------~~~~~~~~~~~~~~--~---~~~~~~~~i~d~~g~ 69 (139)
+|+++|+.++|||||+++|+........ ....+.+....... + ++..+.+.+|||||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 6899999999999999999874432110 01122222222221 1 345688999999999
Q ss_pred ccccccchhhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCc
Q 032487 70 ERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLL 128 (139)
Q Consensus 70 ~~~~~~~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~ 128 (139)
.++.......+..+|++++|+|+.+..+... +.++..+.. ...|+++|+||+|+.
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~---~~~p~iiviNK~D~~ 136 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL---EGLPIVLVINKIDRL 136 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECcccC
Confidence 9887777788899999999999987655432 344444432 348999999999975
No 182
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.74 E-value=2.6e-17 Score=113.19 Aligned_cols=124 Identities=18% Similarity=0.208 Sum_probs=90.5
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcc-----cccccch---h
Q 032487 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQE-----RYHSLAP---M 78 (139)
Q Consensus 7 ~~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~-----~~~~~~~---~ 78 (139)
.+....|+|.|.||+|||||++.+.+.+.....+|+..-..+...+..++ .++|++||||.- +.+.+-. .
T Consensus 165 dp~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~--~R~QvIDTPGlLDRPl~ErN~IE~qAi~ 242 (346)
T COG1084 165 DPDLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGY--LRIQVIDTPGLLDRPLEERNEIERQAIL 242 (346)
T ss_pred CCCCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCC--ceEEEecCCcccCCChHHhcHHHHHHHH
Confidence 34567899999999999999999999988766667665555566555554 789999999952 2222211 1
Q ss_pred hhcC-CCEEEEEEECCC--HHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCCcCCC
Q 032487 79 YYRG-AAAAIIVYDITN--QASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVT 134 (139)
Q Consensus 79 ~~~~-~~~~i~v~~~~~--~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~~~v~ 134 (139)
+++. .+++++++|.+. ..+++.-..++..+.... +.|+++|.||.|+.+...+.
T Consensus 243 AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f--~~p~v~V~nK~D~~~~e~~~ 299 (346)
T COG1084 243 ALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELF--KAPIVVVINKIDIADEEKLE 299 (346)
T ss_pred HHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhc--CCCeEEEEecccccchhHHH
Confidence 2222 578888999876 456777778888888764 38999999999988654443
No 183
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.73 E-value=6.8e-17 Score=117.85 Aligned_cols=115 Identities=19% Similarity=0.202 Sum_probs=78.4
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHhCCCCc-ccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccc----------
Q 032487 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIE-FQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLA---------- 76 (139)
Q Consensus 8 ~~~~ki~i~G~~~~GKssli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~---------- 76 (139)
...++++++|.+++|||||+++|++.+... ...+....+.....+..++ ..+.+|||||........
T Consensus 170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~e~~~~~~ 247 (429)
T TIGR03594 170 DGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNG--KKYLLIDTAGIRRKGKVTEGVEKYSVLR 247 (429)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECC--cEEEEEECCCccccccchhhHHHHHHHH
Confidence 456899999999999999999999865321 1122222222223334444 478999999975443322
Q ss_pred -hhhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCc
Q 032487 77 -PMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLL 128 (139)
Q Consensus 77 -~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~ 128 (139)
..+++.+|++++|+|+.++.+.... .++..+.. .+.|+++|+||+|+.
T Consensus 248 ~~~~~~~ad~~ilV~D~~~~~~~~~~-~~~~~~~~---~~~~iiiv~NK~Dl~ 296 (429)
T TIGR03594 248 TLKAIERADVVLLVLDATEGITEQDL-RIAGLILE---AGKALVIVVNKWDLV 296 (429)
T ss_pred HHHHHHhCCEEEEEEECCCCccHHHH-HHHHHHHH---cCCcEEEEEECcccC
Confidence 2357889999999999987665543 33333332 368999999999987
No 184
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.73 E-value=2.8e-17 Score=119.88 Aligned_cols=114 Identities=18% Similarity=0.141 Sum_probs=75.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCc-ccccceeeEEEEEEEEECCcEEEEEEEeCCCcc--------cccccchhhhcC
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKGQFIE-FQESTIGAAFFSQTLAVNDATVKFEIWDTAGQE--------RYHSLAPMYYRG 82 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~--------~~~~~~~~~~~~ 82 (139)
+|+++|.+|+|||||+|+|.+..... ...+....+.....+..++ ..+.+|||||.. .+......+++.
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 78 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGG--REFILIDTGGIEEDDDGLDKQIREQAEIAIEE 78 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECC--eEEEEEECCCCCCcchhHHHHHHHHHHHHHhh
Confidence 58999999999999999999876321 1222222223334444444 569999999963 233334556788
Q ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCCc
Q 032487 83 AAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131 (139)
Q Consensus 83 ~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~~ 131 (139)
+|++++|+|+.++.+... ..+...++. .+.|+++|+||+|+.+..
T Consensus 79 ad~vl~vvD~~~~~~~~d-~~i~~~l~~---~~~piilVvNK~D~~~~~ 123 (429)
T TIGR03594 79 ADVILFVVDGREGLTPED-EEIAKWLRK---SGKPVILVANKIDGKKED 123 (429)
T ss_pred CCEEEEEEeCCCCCCHHH-HHHHHHHHH---hCCCEEEEEECccCCccc
Confidence 999999999987533222 122233332 367899999999986543
No 185
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.73 E-value=9.1e-17 Score=102.38 Aligned_cols=116 Identities=16% Similarity=0.126 Sum_probs=74.3
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCccccccc--------chhhh
Q 032487 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSL--------APMYY 80 (139)
Q Consensus 9 ~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~--------~~~~~ 80 (139)
...+|+++|++|+|||||++++.+........... ................+.+||+||....... ....+
T Consensus 2 ~~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 80 (168)
T cd04163 2 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQ-TTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSAL 80 (168)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCceEeccCCCC-ceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHH
Confidence 35789999999999999999999876432211111 1111111112223477899999997543322 23347
Q ss_pred cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcC
Q 032487 81 RGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLD 129 (139)
Q Consensus 81 ~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~ 129 (139)
..+|++++|+|..++.+. ....+...+... +.|+++|+||+|+..
T Consensus 81 ~~~d~i~~v~d~~~~~~~-~~~~~~~~~~~~---~~~~iiv~nK~Dl~~ 125 (168)
T cd04163 81 KDVDLVLFVVDASEPIGE-GDEFILELLKKS---KTPVILVLNKIDLVK 125 (168)
T ss_pred HhCCEEEEEEECCCccCc-hHHHHHHHHHHh---CCCEEEEEEchhccc
Confidence 789999999999986221 122333333332 578999999999874
No 186
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.72 E-value=6.4e-17 Score=116.21 Aligned_cols=118 Identities=23% Similarity=0.160 Sum_probs=81.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccc----c---chhhhcCCC
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHS----L---APMYYRGAA 84 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~----~---~~~~~~~~~ 84 (139)
.|.|+|.||+|||||+|+|.+.+......+..+.......+...+ ...+.++|+||...... + ...+++.++
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~-~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~rad 239 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDD-ERSFVVADIPGLIEGASEGAGLGIRFLKHLERCR 239 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCC-CcEEEEEeCCCccccccchhhHHHHHHHHHHhCC
Confidence 699999999999999999998664322222222222333344432 24589999999743211 1 113478899
Q ss_pred EEEEEEECC---CHHHHHHHHHHHHHHHHhCC--CCCeEEEEEeCCCCcCC
Q 032487 85 AAIIVYDIT---NQASFERAKKWVQELQAQGN--PNMVMALAGNKADLLDA 130 (139)
Q Consensus 85 ~~i~v~~~~---~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~~k~D~~~~ 130 (139)
++++|+|+. +...++....|+..+..... ...|+++|+||+|+.+.
T Consensus 240 vlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~ 290 (390)
T PRK12298 240 VLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDE 290 (390)
T ss_pred EEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCCh
Confidence 999999988 45567777788887776532 46899999999998654
No 187
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.72 E-value=2e-17 Score=103.42 Aligned_cols=119 Identities=23% Similarity=0.312 Sum_probs=98.6
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEEE
Q 032487 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (139)
Q Consensus 8 ~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 87 (139)
++.-|++++|..|+|||||++.|...+... .-||.. ..+....+.+ ++|+.+|.+|+...+..|..++..+++++
T Consensus 18 kK~gKllFlGLDNAGKTTLLHMLKdDrl~q-hvPTlH--PTSE~l~Ig~--m~ftt~DLGGH~qArr~wkdyf~~v~~iv 92 (193)
T KOG0077|consen 18 KKFGKLLFLGLDNAGKTTLLHMLKDDRLGQ-HVPTLH--PTSEELSIGG--MTFTTFDLGGHLQARRVWKDYFPQVDAIV 92 (193)
T ss_pred ccCceEEEEeecCCchhhHHHHHccccccc-cCCCcC--CChHHheecC--ceEEEEccccHHHHHHHHHHHHhhhceeE
Confidence 456799999999999999999999776554 333333 2345556666 88999999999999999999999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCCCCcCCc
Q 032487 88 IVYDITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDAR 131 (139)
Q Consensus 88 ~v~~~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~~k~D~~~~~ 131 (139)
+.+|+.|.+.|.+.++-++.+.... -.++|+++.+||+|.+.+.
T Consensus 93 ~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~ 137 (193)
T KOG0077|consen 93 YLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAA 137 (193)
T ss_pred eeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcc
Confidence 9999999999998887777765543 4789999999999998774
No 188
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.72 E-value=1.2e-16 Score=105.04 Aligned_cols=116 Identities=18% Similarity=0.242 Sum_probs=74.6
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcc----------cccccch
Q 032487 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQE----------RYHSLAP 77 (139)
Q Consensus 8 ~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~----------~~~~~~~ 77 (139)
....+|+++|++|+|||||++++.+.++.....++.+.+........ ...+.+||+||.. .+.....
T Consensus 22 ~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~ 98 (196)
T PRK00454 22 DDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKEKWQKLIE 98 (196)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHHHHHHHHH
Confidence 45689999999999999999999987644444445554433333222 2579999999942 2323333
Q ss_pred hhhcC---CCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCC
Q 032487 78 MYYRG---AAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDA 130 (139)
Q Consensus 78 ~~~~~---~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~ 130 (139)
.++.. .+++++++|..++.+... ..+...+. ....|+++++||+|+.+.
T Consensus 99 ~~~~~~~~~~~~~~v~d~~~~~~~~~-~~i~~~l~---~~~~~~iiv~nK~Dl~~~ 150 (196)
T PRK00454 99 EYLRTRENLKGVVLLIDSRHPLKELD-LQMIEWLK---EYGIPVLIVLTKADKLKK 150 (196)
T ss_pred HHHHhCccceEEEEEEecCCCCCHHH-HHHHHHHH---HcCCcEEEEEECcccCCH
Confidence 34443 467888888776543222 11222222 236789999999998654
No 189
>PRK10218 GTP-binding protein; Provisional
Probab=99.72 E-value=1.4e-16 Score=119.70 Aligned_cols=119 Identities=18% Similarity=0.221 Sum_probs=89.1
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHh--CCCCcc------------cccceeeEEEEEEEEECCcEEEEEEEeCCCcccccc
Q 032487 9 INAKLVLLGDVGAGKSSLVLRFVK--GQFIEF------------QESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHS 74 (139)
Q Consensus 9 ~~~ki~i~G~~~~GKssli~~l~~--~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~ 74 (139)
...+|+++|+.++|||||+++|+. +.+... .....+.++......+.+...++.+|||||+..|..
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~ 83 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG 83 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH
Confidence 456899999999999999999996 222211 123456666666666666678999999999999998
Q ss_pred cchhhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCCc
Q 032487 75 LAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131 (139)
Q Consensus 75 ~~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~~ 131 (139)
.+..+++.+|++++|+|+.+.... ..+.++..+.. .++|.+++.||+|+.+++
T Consensus 84 ~v~~~l~~aDg~ILVVDa~~G~~~-qt~~~l~~a~~---~gip~IVviNKiD~~~a~ 136 (607)
T PRK10218 84 EVERVMSMVDSVLLVVDAFDGPMP-QTRFVTKKAFA---YGLKPIVVINKVDRPGAR 136 (607)
T ss_pred HHHHHHHhCCEEEEEEecccCccH-HHHHHHHHHHH---cCCCEEEEEECcCCCCCc
Confidence 888899999999999999875322 23334343333 367889999999987654
No 190
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.72 E-value=1.5e-16 Score=119.49 Aligned_cols=112 Identities=20% Similarity=0.197 Sum_probs=82.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCC---CCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEEE
Q 032487 11 AKLVLLGDVGAGKSSLVLRFVKGQ---FIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (139)
Q Consensus 11 ~ki~i~G~~~~GKssli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 87 (139)
+.|+++|+.++|||||+++|.+.. +..+..+..+.+.....+..++ ..+.+||+||++.|.......+.++|+++
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aI 78 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAAL 78 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence 368999999999999999999633 3333444455454444455555 78999999999988777777788999999
Q ss_pred EEEECCCH---HHHHHHHHHHHHHHHhCCCCCe-EEEEEeCCCCcCCc
Q 032487 88 IVYDITNQ---ASFERAKKWVQELQAQGNPNMV-MALAGNKADLLDAR 131 (139)
Q Consensus 88 ~v~~~~~~---~s~~~~~~~~~~~~~~~~~~~p-~ivv~~k~D~~~~~ 131 (139)
+|+|+++. .+++ ++..+.. .++| +++++||+|+.+..
T Consensus 79 LVVDa~~G~~~qT~e----hl~il~~---lgi~~iIVVlNK~Dlv~~~ 119 (581)
T TIGR00475 79 LVVDADEGVMTQTGE----HLAVLDL---LGIPHTIVVITKADRVNEE 119 (581)
T ss_pred EEEECCCCCcHHHHH----HHHHHHH---cCCCeEEEEEECCCCCCHH
Confidence 99999883 3333 3333332 2466 99999999997644
No 191
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.71 E-value=2.7e-16 Score=108.57 Aligned_cols=117 Identities=16% Similarity=0.228 Sum_probs=75.4
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHhCCCCcc----------cccceeeEEEEEEEEECCcEEEEEEEeCCCcccccc---
Q 032487 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEF----------QESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHS--- 74 (139)
Q Consensus 8 ~~~~ki~i~G~~~~GKssli~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~--- 74 (139)
...++|+++|.+|+|||||+|+|++..+... ..++.+.......+..++..+++.+|||||......
T Consensus 2 g~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~ 81 (276)
T cd01850 2 GFQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSD 81 (276)
T ss_pred CcEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchh
Confidence 3578999999999999999999998776543 234444445555566677778999999999432211
Q ss_pred -----------------------cchhhhc--CCCEEEEEEECCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEeCCCCc
Q 032487 75 -----------------------LAPMYYR--GAAAAIIVYDITNQASFERA-KKWVQELQAQGNPNMVMALAGNKADLL 128 (139)
Q Consensus 75 -----------------------~~~~~~~--~~~~~i~v~~~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~~k~D~~ 128 (139)
.+...+. .+|+++++++.... .+... .+.++.+. ...|+++|+||+|+.
T Consensus 82 ~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~-~l~~~D~~~lk~l~----~~v~vi~VinK~D~l 156 (276)
T cd01850 82 CWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGH-GLKPLDIEFMKRLS----KRVNIIPVIAKADTL 156 (276)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCC-CCCHHHHHHHHHHh----ccCCEEEEEECCCcC
Confidence 1112223 35667777765531 11111 23333333 258999999999986
Q ss_pred C
Q 032487 129 D 129 (139)
Q Consensus 129 ~ 129 (139)
.
T Consensus 157 ~ 157 (276)
T cd01850 157 T 157 (276)
T ss_pred C
Confidence 5
No 192
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.71 E-value=1.4e-16 Score=119.71 Aligned_cols=117 Identities=18% Similarity=0.243 Sum_probs=86.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC--CCCcc------------cccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccc
Q 032487 11 AKLVLLGDVGAGKSSLVLRFVKG--QFIEF------------QESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLA 76 (139)
Q Consensus 11 ~ki~i~G~~~~GKssli~~l~~~--~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~ 76 (139)
-+|+++|+.++|||||+++|+.. .+... .....|.+.......+.+...++.+|||||+.+|....
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev 81 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEV 81 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHH
Confidence 37999999999999999999863 22111 01223445555555555556899999999999988877
Q ss_pred hhhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCCc
Q 032487 77 PMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131 (139)
Q Consensus 77 ~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~~ 131 (139)
...++.+|++++|+|+.+. .....+.|+..+... ++|+++|+||+|+.+.+
T Consensus 82 ~~~l~~aD~alLVVDa~~G-~~~qT~~~l~~a~~~---~ip~IVviNKiD~~~a~ 132 (594)
T TIGR01394 82 ERVLGMVDGVLLLVDASEG-PMPQTRFVLKKALEL---GLKPIVVINKIDRPSAR 132 (594)
T ss_pred HHHHHhCCEEEEEEeCCCC-CcHHHHHHHHHHHHC---CCCEEEEEECCCCCCcC
Confidence 8889999999999999874 234455666666543 57899999999986543
No 193
>PRK00089 era GTPase Era; Reviewed
Probab=99.71 E-value=1.9e-16 Score=110.30 Aligned_cols=117 Identities=15% Similarity=0.157 Sum_probs=74.3
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCccccc--------ccchhh
Q 032487 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYH--------SLAPMY 79 (139)
Q Consensus 8 ~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~--------~~~~~~ 79 (139)
.+.-.|+++|.+|+|||||+|+|++.+..........+......+... ...++.+|||||..... ......
T Consensus 3 ~~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~-~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~ 81 (292)
T PRK00089 3 FKSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTE-DDAQIIFVDTPGIHKPKRALNRAMNKAAWSS 81 (292)
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEc-CCceEEEEECCCCCCchhHHHHHHHHHHHHH
Confidence 356679999999999999999999876543221111111111111111 23789999999974432 122335
Q ss_pred hcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcC
Q 032487 80 YRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLD 129 (139)
Q Consensus 80 ~~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~ 129 (139)
+..+|++++|+|+++..+ .....++..+. ..+.|+++|+||+|+..
T Consensus 82 ~~~~D~il~vvd~~~~~~-~~~~~i~~~l~---~~~~pvilVlNKiDl~~ 127 (292)
T PRK00089 82 LKDVDLVLFVVDADEKIG-PGDEFILEKLK---KVKTPVILVLNKIDLVK 127 (292)
T ss_pred HhcCCEEEEEEeCCCCCC-hhHHHHHHHHh---hcCCCEEEEEECCcCCC
Confidence 778999999999988321 11223333333 23689999999999973
No 194
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.71 E-value=1e-16 Score=105.06 Aligned_cols=116 Identities=21% Similarity=0.250 Sum_probs=79.7
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHhCCCC--c----------------ccccceeeEEEEEEEEECCcEEEEEEEeCCCcc
Q 032487 9 INAKLVLLGDVGAGKSSLVLRFVKGQFI--E----------------FQESTIGAAFFSQTLAVNDATVKFEIWDTAGQE 70 (139)
Q Consensus 9 ~~~ki~i~G~~~~GKssli~~l~~~~~~--~----------------~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~ 70 (139)
+..+|+++|+.++|||||+++|+..... . +......................+.++|+||+.
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~ 81 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE 81 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence 5678999999999999999999954321 0 000111111122222212345789999999998
Q ss_pred cccccchhhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCc
Q 032487 71 RYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLL 128 (139)
Q Consensus 71 ~~~~~~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~ 128 (139)
+|.......+..+|++++|+|+.++-.. ...+.+..+... +.|++++.||+|+.
T Consensus 82 ~f~~~~~~~~~~~D~ailvVda~~g~~~-~~~~~l~~~~~~---~~p~ivvlNK~D~~ 135 (188)
T PF00009_consen 82 DFIKEMIRGLRQADIAILVVDANDGIQP-QTEEHLKILREL---GIPIIVVLNKMDLI 135 (188)
T ss_dssp HHHHHHHHHHTTSSEEEEEEETTTBSTH-HHHHHHHHHHHT---T-SEEEEEETCTSS
T ss_pred ceeecccceecccccceeeeeccccccc-cccccccccccc---ccceEEeeeeccch
Confidence 8877777778999999999999876332 234444555543 67899999999987
No 195
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.71 E-value=1.4e-16 Score=116.09 Aligned_cols=122 Identities=20% Similarity=0.175 Sum_probs=80.8
Q ss_pred CCcceeEEEEEcCCCCcHHHHHHHHHhCCCCcc-----------------------------cccceeeEEEEEEEEECC
Q 032487 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEF-----------------------------QESTIGAAFFSQTLAVND 56 (139)
Q Consensus 6 ~~~~~~ki~i~G~~~~GKssli~~l~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~ 56 (139)
+++..++++++|++++|||||+++|++..-.-. .....|.+.......+..
T Consensus 2 ~~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~ 81 (425)
T PRK12317 2 KEKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFET 81 (425)
T ss_pred CCCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEec
Confidence 356789999999999999999999984321100 011233444444444555
Q ss_pred cEEEEEEEeCCCcccccccchhhhcCCCEEEEEEECCCHHHH-HHHHHHHHHHHHhCCCCCeEEEEEeCCCCcC
Q 032487 57 ATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASF-ERAKKWVQELQAQGNPNMVMALAGNKADLLD 129 (139)
Q Consensus 57 ~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~~~~~~~s~-~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~ 129 (139)
..+++.+|||||++++.......+..+|++++|+|++++..+ .....++..+... ...|+++++||+|+.+
T Consensus 82 ~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~--~~~~iivviNK~Dl~~ 153 (425)
T PRK12317 82 DKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL--GINQLIVAINKMDAVN 153 (425)
T ss_pred CCeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc--CCCeEEEEEEcccccc
Confidence 568899999999987755444456789999999999873122 1122333333332 2246999999999975
No 196
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.71 E-value=2e-16 Score=118.55 Aligned_cols=114 Identities=22% Similarity=0.217 Sum_probs=79.5
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHhCCCCcc----cccceeeEEEEEEEEE------------CCcEEEEEEEeCCCcccc
Q 032487 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEF----QESTIGAAFFSQTLAV------------NDATVKFEIWDTAGQERY 72 (139)
Q Consensus 9 ~~~ki~i~G~~~~GKssli~~l~~~~~~~~----~~~~~~~~~~~~~~~~------------~~~~~~~~i~d~~g~~~~ 72 (139)
+..-|+++|++++|||||+++|.+..+... .++++|..+....... +.....+.+|||||++.|
T Consensus 3 r~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f 82 (590)
T TIGR00491 3 RSPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAF 82 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhH
Confidence 344699999999999999999998766432 2233333332211100 000123889999999999
Q ss_pred cccchhhhcCCCEEEEEEECCC---HHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcC
Q 032487 73 HSLAPMYYRGAAAAIIVYDITN---QASFERAKKWVQELQAQGNPNMVMALAGNKADLLD 129 (139)
Q Consensus 73 ~~~~~~~~~~~~~~i~v~~~~~---~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~ 129 (139)
..++...+..+|++++|+|+++ +.+++.+. .+.. .+.|+++++||+|+.+
T Consensus 83 ~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~----~l~~---~~vpiIVv~NK~Dl~~ 135 (590)
T TIGR00491 83 TNLRKRGGALADLAILIVDINEGFKPQTQEALN----ILRM---YKTPFVVAANKIDRIP 135 (590)
T ss_pred HHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHH----HHHH---cCCCEEEEEECCCccc
Confidence 9888888899999999999987 44444332 2222 3679999999999964
No 197
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.70 E-value=2.9e-16 Score=120.79 Aligned_cols=117 Identities=16% Similarity=0.163 Sum_probs=81.3
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCccccccc----------chh
Q 032487 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSL----------APM 78 (139)
Q Consensus 9 ~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~----------~~~ 78 (139)
+..+|+++|++|||||||+|++.+..... ....|.+...+...+.....++.+||+||...+... ...
T Consensus 2 ~~~~IaLvG~pNvGKSTLfN~Ltg~~~~v--gn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~ 79 (772)
T PRK09554 2 KKLTIGLIGNPNSGKTTLFNQLTGARQRV--GNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACH 79 (772)
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCcc--CCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHH
Confidence 45789999999999999999999865432 223445554444444445578999999998765432 112
Q ss_pred hh--cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCCcCC
Q 032487 79 YY--RGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKV 133 (139)
Q Consensus 79 ~~--~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~~~v 133 (139)
++ ..+|++++|+|+++.+. ...+...+.. .+.|++++.||+|+.+.+.+
T Consensus 80 ~l~~~~aD~vI~VvDat~ler---~l~l~~ql~e---~giPvIvVlNK~Dl~~~~~i 130 (772)
T PRK09554 80 YILSGDADLLINVVDASNLER---NLYLTLQLLE---LGIPCIVALNMLDIAEKQNI 130 (772)
T ss_pred HHhccCCCEEEEEecCCcchh---hHHHHHHHHH---cCCCEEEEEEchhhhhccCc
Confidence 22 47899999999987543 2234444443 36899999999998765443
No 198
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.70 E-value=2.3e-16 Score=118.80 Aligned_cols=118 Identities=18% Similarity=0.215 Sum_probs=84.5
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHhCC--CC-----ccc------ccceeeEEEEEEEEE-----CCcEEEEEEEeCCCcc
Q 032487 9 INAKLVLLGDVGAGKSSLVLRFVKGQ--FI-----EFQ------ESTIGAAFFSQTLAV-----NDATVKFEIWDTAGQE 70 (139)
Q Consensus 9 ~~~ki~i~G~~~~GKssli~~l~~~~--~~-----~~~------~~~~~~~~~~~~~~~-----~~~~~~~~i~d~~g~~ 70 (139)
...+++++|+.++|||||+++|+... .. ... ....|.++....+.. ++..+.+.+|||||+.
T Consensus 6 ~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~ 85 (600)
T PRK05433 6 NIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHV 85 (600)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcH
Confidence 45689999999999999999998632 10 000 112233333333222 4456899999999999
Q ss_pred cccccchhhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCC
Q 032487 71 RYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDA 130 (139)
Q Consensus 71 ~~~~~~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~ 130 (139)
++...+..++..+|++++|+|+.++........|.... ..++|+++|+||+|+.+.
T Consensus 86 dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~----~~~lpiIvViNKiDl~~a 141 (600)
T PRK05433 86 DFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLAL----ENDLEIIPVLNKIDLPAA 141 (600)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH----HCCCCEEEEEECCCCCcc
Confidence 99888888999999999999999875555555554322 236789999999998654
No 199
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.70 E-value=2.6e-16 Score=120.83 Aligned_cols=118 Identities=25% Similarity=0.193 Sum_probs=77.3
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCccc--------ccccchhh
Q 032487 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER--------YHSLAPMY 79 (139)
Q Consensus 8 ~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~--------~~~~~~~~ 79 (139)
....+|+++|.+++|||||+|+|++..... .....|.+..............+.+|||||.+. +......+
T Consensus 273 ~~~~~V~IvG~~nvGKSSL~n~l~~~~~~i-v~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~ 351 (712)
T PRK09518 273 KAVGVVAIVGRPNVGKSTLVNRILGRREAV-VEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIA 351 (712)
T ss_pred ccCcEEEEECCCCCCHHHHHHHHhCCCcee-ecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHH
Confidence 345789999999999999999999765422 122333333333222222236789999999763 12223345
Q ss_pred hcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCC
Q 032487 80 YRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDA 130 (139)
Q Consensus 80 ~~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~ 130 (139)
+..+|++++|+|+.+.-... -..|...+.. .+.|+++|+||+|+.+.
T Consensus 352 ~~~aD~iL~VvDa~~~~~~~-d~~i~~~Lr~---~~~pvIlV~NK~D~~~~ 398 (712)
T PRK09518 352 VSLADAVVFVVDGQVGLTST-DERIVRMLRR---AGKPVVLAVNKIDDQAS 398 (712)
T ss_pred HHhCCEEEEEEECCCCCCHH-HHHHHHHHHh---cCCCEEEEEECcccccc
Confidence 78899999999998642211 1244444443 47899999999998653
No 200
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.69 E-value=2.6e-17 Score=103.59 Aligned_cols=122 Identities=26% Similarity=0.347 Sum_probs=93.8
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHhCC---CC----cccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhh
Q 032487 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQ---FI----EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMY 79 (139)
Q Consensus 7 ~~~~~ki~i~G~~~~GKssli~~l~~~~---~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~ 79 (139)
.+..+.++|+|+.++|||||+.+....- +. ..-.++.|. ...++..++ ..+.+||.+|++..+++|..+
T Consensus 14 ~Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgL--nig~i~v~~--~~l~fwdlgGQe~lrSlw~~y 89 (197)
T KOG0076|consen 14 KKEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGL--NIGTIEVCN--APLSFWDLGGQESLRSLWKKY 89 (197)
T ss_pred hhhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccce--eecceeecc--ceeEEEEcCChHHHHHHHHHH
Confidence 3557889999999999999998876431 11 112334443 334444443 679999999999999999999
Q ss_pred hcCCCEEEEEEECCCHHHHHHHHHHHHHHHH-hCCCCCeEEEEEeCCCCcCCcC
Q 032487 80 YRGAAAAIIVYDITNQASFERAKKWVQELQA-QGNPNMVMALAGNKADLLDARK 132 (139)
Q Consensus 80 ~~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~-~~~~~~p~ivv~~k~D~~~~~~ 132 (139)
+..++++++++|+.|++.|+....-++.+.. ....+.|+++.+||.|+.+...
T Consensus 90 Y~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~ 143 (197)
T KOG0076|consen 90 YWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAME 143 (197)
T ss_pred HHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhh
Confidence 9999999999999999998887765555444 4457899999999999988643
No 201
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.69 E-value=2.9e-16 Score=104.12 Aligned_cols=118 Identities=16% Similarity=0.114 Sum_probs=72.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCC---CcccccceeeEEEEEEEEE-------------------------C--C----
Q 032487 11 AKLVLLGDVGAGKSSLVLRFVKGQF---IEFQESTIGAAFFSQTLAV-------------------------N--D---- 56 (139)
Q Consensus 11 ~ki~i~G~~~~GKssli~~l~~~~~---~~~~~~~~~~~~~~~~~~~-------------------------~--~---- 56 (139)
++|.++|+.++|||||++.+.+... ..+.............+.. + +
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 4789999999999999999976521 1111111111111000000 0 0
Q ss_pred cEEEEEEEeCCCcccccccchhhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCC
Q 032487 57 ATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDA 130 (139)
Q Consensus 57 ~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~ 130 (139)
...++.+||+||++.+.......+..+|++++|+|+.++..-......+..+... ...|+++|+||+|+.+.
T Consensus 81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~--~~~~iiivvNK~Dl~~~ 152 (203)
T cd01888 81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIM--GLKHIIIVQNKIDLVKE 152 (203)
T ss_pred cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHc--CCCcEEEEEEchhccCH
Confidence 1267899999999888776677778899999999998742111112222333322 23479999999998753
No 202
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=99.69 E-value=1.6e-19 Score=114.76 Aligned_cols=129 Identities=33% Similarity=0.597 Sum_probs=110.7
Q ss_pred CCCCCcceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCc-EEEEEEEeCCCcccccccchhhhc
Q 032487 3 TTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDA-TVKFEIWDTAGQERYHSLAPMYYR 81 (139)
Q Consensus 3 ~~~~~~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~d~~g~~~~~~~~~~~~~ 81 (139)
++.+...-+|++|+|..++|||+++.++....+...+..++|.++..+....+.. -+++++||..|++++..+..-+++
T Consensus 18 ap~kr~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyyk 97 (229)
T KOG4423|consen 18 APKKREHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYK 97 (229)
T ss_pred CCchhhhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEec
Confidence 3444456789999999999999999999998888889999999887777666543 367899999999999999999999
Q ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHhC----CCCCeEEEEEeCCCCcCCc
Q 032487 82 GAAAAIIVYDITNQASFERAKKWVQELQAQG----NPNMVMALAGNKADLLDAR 131 (139)
Q Consensus 82 ~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~----~~~~p~ivv~~k~D~~~~~ 131 (139)
.+.+.++|||++...+|+....|...+.... ....|+++.+||||.....
T Consensus 98 ea~~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a 151 (229)
T KOG4423|consen 98 EAHGAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSA 151 (229)
T ss_pred CCcceEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHh
Confidence 9999999999999999999999999986632 3578899999999986543
No 203
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.69 E-value=2e-15 Score=91.69 Aligned_cols=106 Identities=21% Similarity=0.204 Sum_probs=67.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCC-cccccceeeEEEEEEEEECCcEEEEEEEeCCCccccc---------ccchhhhc
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKGQFI-EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYH---------SLAPMYYR 81 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~---------~~~~~~~~ 81 (139)
+|+++|.+|+|||||+|.|++.+.. ....+..........+.+++ ..+.++||||..... ......+.
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~--~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~ 78 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNN--KKFILVDTPGINDGESQDNDGKEIRKFLEQIS 78 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETT--EEEEEEESSSCSSSSHHHHHHHHHHHHHHHHC
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeece--eeEEEEeCCCCcccchhhHHHHHHHHHHHHHH
Confidence 6899999999999999999985432 11112222222234445555 456799999963211 11222347
Q ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeC
Q 032487 82 GAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNK 124 (139)
Q Consensus 82 ~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k 124 (139)
.+|++++|+|.+++.. +...++++.++ ...|+++|.||
T Consensus 79 ~~d~ii~vv~~~~~~~-~~~~~~~~~l~----~~~~~i~v~NK 116 (116)
T PF01926_consen 79 KSDLIIYVVDASNPIT-EDDKNILRELK----NKKPIILVLNK 116 (116)
T ss_dssp TESEEEEEEETTSHSH-HHHHHHHHHHH----TTSEEEEEEES
T ss_pred HCCEEEEEEECCCCCC-HHHHHHHHHHh----cCCCEEEEEcC
Confidence 8999999999887322 22334444442 57899999998
No 204
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.69 E-value=3e-16 Score=114.40 Aligned_cols=122 Identities=16% Similarity=0.140 Sum_probs=80.9
Q ss_pred CCcceeEEEEEcCCCCcHHHHHHHHHhC--CCCcc---------------------------cccceeeEEEEEEEEECC
Q 032487 6 NKNINAKLVLLGDVGAGKSSLVLRFVKG--QFIEF---------------------------QESTIGAAFFSQTLAVND 56 (139)
Q Consensus 6 ~~~~~~ki~i~G~~~~GKssli~~l~~~--~~~~~---------------------------~~~~~~~~~~~~~~~~~~ 56 (139)
.++..++++++|+.++|||||+++|+.. ..... .....|.+.......+..
T Consensus 3 ~~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~ 82 (426)
T TIGR00483 3 KEKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFET 82 (426)
T ss_pred CCCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEcc
Confidence 4677899999999999999999999852 11100 001113333333444444
Q ss_pred cEEEEEEEeCCCcccccccchhhhcCCCEEEEEEECCCHHHHHH--HHHHHHHHHHhCCCCCeEEEEEeCCCCcC
Q 032487 57 ATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFER--AKKWVQELQAQGNPNMVMALAGNKADLLD 129 (139)
Q Consensus 57 ~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~~~~~~~s~~~--~~~~~~~~~~~~~~~~p~ivv~~k~D~~~ 129 (139)
....+.+||+||++.|.......+..+|++++|+|++++.+... ...++..+... ...|+++++||+|+.+
T Consensus 83 ~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~--~~~~iIVviNK~Dl~~ 155 (426)
T TIGR00483 83 DKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTL--GINQLIVAINKMDSVN 155 (426)
T ss_pred CCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHc--CCCeEEEEEEChhccC
Confidence 55789999999998776544555788999999999998753211 12222222222 2357999999999964
No 205
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.69 E-value=3.7e-16 Score=98.61 Aligned_cols=113 Identities=22% Similarity=0.190 Sum_probs=75.5
Q ss_pred EEcCCCCcHHHHHHHHHhCCCCc-ccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccc-------hhhhcCCCEE
Q 032487 15 LLGDVGAGKSSLVLRFVKGQFIE-FQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLA-------PMYYRGAAAA 86 (139)
Q Consensus 15 i~G~~~~GKssli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~-------~~~~~~~~~~ 86 (139)
++|++|+|||||++++.+..... ................... ...+.+||+||........ ...+..+|++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i 79 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGP-LGPVVLIDTPGIDEAGGLGREREELARRVLERADLI 79 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecC-CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence 58999999999999999865442 2222222122222222221 4679999999976554332 3467889999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCCcC
Q 032487 87 IIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARK 132 (139)
Q Consensus 87 i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~~~ 132 (139)
++++|..+........ +..... ....|+++|+||+|+.....
T Consensus 80 l~v~~~~~~~~~~~~~-~~~~~~---~~~~~~ivv~nK~D~~~~~~ 121 (163)
T cd00880 80 LFVVDADLRADEEEEK-LLELLR---ERGKPVLLVLNKIDLLPEEE 121 (163)
T ss_pred EEEEeCCCCCCHHHHH-HHHHHH---hcCCeEEEEEEccccCChhh
Confidence 9999999877655544 333332 35789999999999876543
No 206
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.69 E-value=4.3e-16 Score=119.64 Aligned_cols=116 Identities=22% Similarity=0.249 Sum_probs=79.4
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHhCCCC-cccccceeeEEEEEEEEECCcEEEEEEEeCCCccc----------cccc-c
Q 032487 9 INAKLVLLGDVGAGKSSLVLRFVKGQFI-EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER----------YHSL-A 76 (139)
Q Consensus 9 ~~~ki~i~G~~~~GKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~----------~~~~-~ 76 (139)
...||+++|.+|+|||||+|+|++.+.. ....+..+.+.....+.+++. .+.+|||||..+ +... .
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~--~~~liDTaG~~~~~~~~~~~e~~~~~r~ 526 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGE--DWLFIDTAGIKRRQHKLTGAEYYSSLRT 526 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCC--EEEEEECCCcccCcccchhHHHHHHHHH
Confidence 4589999999999999999999987642 122222333333444555653 467999999632 1111 1
Q ss_pred hhhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCC
Q 032487 77 PMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDA 130 (139)
Q Consensus 77 ~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~ 130 (139)
..+++.+|++++|+|++++.+....+ ++..+.. .+.|+++|+||+|+.+.
T Consensus 527 ~~~i~~advvilViDat~~~s~~~~~-i~~~~~~---~~~piIiV~NK~DL~~~ 576 (712)
T PRK09518 527 QAAIERSELALFLFDASQPISEQDLK-VMSMAVD---AGRALVLVFNKWDLMDE 576 (712)
T ss_pred HHHhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH---cCCCEEEEEEchhcCCh
Confidence 23467899999999999887766554 3333332 46899999999999653
No 207
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.69 E-value=6.8e-16 Score=112.84 Aligned_cols=115 Identities=21% Similarity=0.247 Sum_probs=76.9
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEE--EEEEECCcEEEEEEEeCCCccccccc----------
Q 032487 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFS--QTLAVNDATVKFEIWDTAGQERYHSL---------- 75 (139)
Q Consensus 8 ~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~d~~g~~~~~~~---------- 75 (139)
...++|+++|.+++|||||+|+|++...... ....|++... ..+..++ ..+.+|||||.......
T Consensus 171 ~~~~~v~ivG~~n~GKStlin~ll~~~~~~~-~~~~gtt~~~~~~~~~~~~--~~~~lvDT~G~~~~~~~~~~~e~~~~~ 247 (435)
T PRK00093 171 DEPIKIAIIGRPNVGKSSLINALLGEERVIV-SDIAGTTRDSIDTPFERDG--QKYTLIDTAGIRRKGKVTEGVEKYSVI 247 (435)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCceee-cCCCCceEEEEEEEEEECC--eeEEEEECCCCCCCcchhhHHHHHHHH
Confidence 4579999999999999999999997653221 1122223322 2233344 56889999996432211
Q ss_pred -chhhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcC
Q 032487 76 -APMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLD 129 (139)
Q Consensus 76 -~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~ 129 (139)
...++..+|++++|+|+.++.+.... .++..+.. ...|+++++||+|+.+
T Consensus 248 ~~~~~~~~ad~~ilViD~~~~~~~~~~-~i~~~~~~---~~~~~ivv~NK~Dl~~ 298 (435)
T PRK00093 248 RTLKAIERADVVLLVIDATEGITEQDL-RIAGLALE---AGRALVIVVNKWDLVD 298 (435)
T ss_pred HHHHHHHHCCEEEEEEeCCCCCCHHHH-HHHHHHHH---cCCcEEEEEECccCCC
Confidence 12357789999999999987665443 33333333 3579999999999874
No 208
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.69 E-value=3.2e-16 Score=104.30 Aligned_cols=115 Identities=25% Similarity=0.243 Sum_probs=72.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCccc-----------------------------ccceeeEEEEEEEEECCcEEEEE
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQ-----------------------------ESTIGAAFFSQTLAVNDATVKFE 62 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~ 62 (139)
+|+++|++++|||||+++|+...-.... ....|.+.......+.....++.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 5899999999999999999853321100 00012222222223333346789
Q ss_pred EEeCCCcccccccchhhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcC
Q 032487 63 IWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLD 129 (139)
Q Consensus 63 i~d~~g~~~~~~~~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~ 129 (139)
+|||||++.+.......+..+|++++|+|++++..- ........+... ...++++|+||+|+.+
T Consensus 81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~-~~~~~~~~~~~~--~~~~iIvviNK~D~~~ 144 (208)
T cd04166 81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVLE-QTRRHSYILSLL--GIRHVVVAVNKMDLVD 144 (208)
T ss_pred EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccH-hHHHHHHHHHHc--CCCcEEEEEEchhccc
Confidence 999999987765555667899999999999875321 122222222222 1245788999999864
No 209
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.69 E-value=2.9e-16 Score=108.23 Aligned_cols=113 Identities=19% Similarity=0.220 Sum_probs=76.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCccc------------------ccceeeEEEEEEEEECCcEEEEEEEeCCCccccc
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQ------------------ESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYH 73 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~ 73 (139)
+|+++|++|+|||||++++++....... ....+.......+.. ...++.+|||||...+.
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~--~~~~i~liDtPG~~~f~ 78 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEW--KGHKINLIDTPGYADFV 78 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEE--CCEEEEEEECcCHHHHH
Confidence 5899999999999999999853211000 001111112222333 34789999999998777
Q ss_pred ccchhhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCC
Q 032487 74 SLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDA 130 (139)
Q Consensus 74 ~~~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~ 130 (139)
.....++..+|++++|+|+.+.........| ..+.. .+.|.++++||+|+...
T Consensus 79 ~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~-~~~~~---~~~p~iivvNK~D~~~~ 131 (268)
T cd04170 79 GETRAALRAADAALVVVSAQSGVEVGTEKLW-EFADE---AGIPRIIFINKMDRERA 131 (268)
T ss_pred HHHHHHHHHCCEEEEEEeCCCCCCHHHHHHH-HHHHH---cCCCEEEEEECCccCCC
Confidence 6677788999999999999886554333333 23332 36799999999998754
No 210
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.68 E-value=3.4e-16 Score=117.70 Aligned_cols=109 Identities=19% Similarity=0.152 Sum_probs=75.3
Q ss_pred cCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCccccccc------chhhh--cCCCEEEE
Q 032487 17 GDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSL------APMYY--RGAAAAII 88 (139)
Q Consensus 17 G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~------~~~~~--~~~~~~i~ 88 (139)
|++|+|||||+|++.+........+..+.+.....+.+++ .++.+||+||+..+... ...++ ..+|++++
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~--~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~ 78 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQG--EDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN 78 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECC--eEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence 8999999999999998765444445555555555555555 56899999999776543 22232 36899999
Q ss_pred EEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCCcCC
Q 032487 89 VYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKV 133 (139)
Q Consensus 89 v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~~~v 133 (139)
|+|.++.+. ...+...+. ..+.|+++++||+|+.+++.+
T Consensus 79 VvDat~ler---~l~l~~ql~---~~~~PiIIVlNK~Dl~~~~~i 117 (591)
T TIGR00437 79 VVDASNLER---NLYLTLQLL---ELGIPMILALNLVDEAEKKGI 117 (591)
T ss_pred EecCCcchh---hHHHHHHHH---hcCCCEEEEEehhHHHHhCCC
Confidence 999987432 222222232 246899999999998765444
No 211
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.68 E-value=9.5e-16 Score=115.12 Aligned_cols=115 Identities=24% Similarity=0.271 Sum_probs=79.0
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHhCCCCccc----ccceeeEEEEEEEEE--CCcE-----E-----EEEEEeCCCcc
Q 032487 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQ----ESTIGAAFFSQTLAV--NDAT-----V-----KFEIWDTAGQE 70 (139)
Q Consensus 7 ~~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~----~~~~~~~~~~~~~~~--~~~~-----~-----~~~i~d~~g~~ 70 (139)
..++.-|+++|++++|||||+++|.+....... +++.|.++....... .+.. . .+.+|||||++
T Consensus 3 ~~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e 82 (586)
T PRK04004 3 KLRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHE 82 (586)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChH
Confidence 356678999999999999999999876543222 223333322211100 0100 1 26899999999
Q ss_pred cccccchhhhcCCCEEEEEEECCC---HHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCc
Q 032487 71 RYHSLAPMYYRGAAAAIIVYDITN---QASFERAKKWVQELQAQGNPNMVMALAGNKADLL 128 (139)
Q Consensus 71 ~~~~~~~~~~~~~~~~i~v~~~~~---~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~ 128 (139)
.|...+...+..+|++++|+|+++ +.+++.+. .+.. .+.|+++++||+|+.
T Consensus 83 ~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~----~~~~---~~vpiIvviNK~D~~ 136 (586)
T PRK04004 83 AFTNLRKRGGALADIAILVVDINEGFQPQTIEAIN----ILKR---RKTPFVVAANKIDRI 136 (586)
T ss_pred HHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHH----HHHH---cCCCEEEEEECcCCc
Confidence 998888877888999999999987 45554433 2222 368899999999985
No 212
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.68 E-value=1.5e-15 Score=101.96 Aligned_cols=116 Identities=19% Similarity=0.313 Sum_probs=75.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEEC-CcEEEEEEEeCCCcccccc-----cchhhhcCCCE
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVN-DATVKFEIWDTAGQERYHS-----LAPMYYRGAAA 85 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~d~~g~~~~~~-----~~~~~~~~~~~ 85 (139)
||+++|+.++||||+.+.+..+-.+. .+...+.+.......+. .....+++||+||+..+.. .....++++++
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~-dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~ 79 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPR-DTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGV 79 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GG-GGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCch-hccccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCE
Confidence 79999999999999987777554333 33444444433333332 2236899999999965433 34567899999
Q ss_pred EEEEEECCCH---HHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcC
Q 032487 86 AIIVYDITNQ---ASFERAKKWVQELQAQGNPNMVMALAGNKADLLD 129 (139)
Q Consensus 86 ~i~v~~~~~~---~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~ 129 (139)
+|+|+|+.+. ..+..+...+..+.+. .++..+.++.+|.|+..
T Consensus 80 LIyV~D~qs~~~~~~l~~~~~~i~~l~~~-sp~~~v~vfiHK~D~l~ 125 (232)
T PF04670_consen 80 LIYVFDAQSDDYDEDLAYLSDCIEALRQY-SPNIKVFVFIHKMDLLS 125 (232)
T ss_dssp EEEEEETT-STCHHHHHHHHHHHHHHHHH-STT-EEEEEEE-CCCS-
T ss_pred EEEEEEcccccHHHHHHHHHHHHHHHHHh-CCCCeEEEEEeecccCC
Confidence 9999999943 3455556666667766 57889999999999854
No 213
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.68 E-value=6.6e-16 Score=106.33 Aligned_cols=115 Identities=18% Similarity=0.137 Sum_probs=78.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCC--c---c-----------cccceeeEEEEEEEEECCcEEEEEEEeCCCccccccc
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKGQFI--E---F-----------QESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSL 75 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~~~~--~---~-----------~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~ 75 (139)
+|+++|++++|||||+++|+...-. . . ....-+.+.......+.....++.+|||||..++...
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~ 80 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE 80 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence 5899999999999999999742110 0 0 0011122333333333334578999999999888777
Q ss_pred chhhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCC
Q 032487 76 APMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDA 130 (139)
Q Consensus 76 ~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~ 130 (139)
+...++.+|++++|+|+.+...-. ...++..+.. .+.|++++.||+|+.+.
T Consensus 81 ~~~~l~~aD~ailVVDa~~g~~~~-t~~~~~~~~~---~~~p~ivviNK~D~~~a 131 (270)
T cd01886 81 VERSLRVLDGAVAVFDAVAGVEPQ-TETVWRQADR---YNVPRIAFVNKMDRTGA 131 (270)
T ss_pred HHHHHHHcCEEEEEEECCCCCCHH-HHHHHHHHHH---cCCCEEEEEECCCCCCC
Confidence 788899999999999998753222 2333344443 35789999999998753
No 214
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.67 E-value=3.3e-16 Score=100.08 Aligned_cols=99 Identities=21% Similarity=0.207 Sum_probs=65.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccc----hhhhcCCCEEE
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLA----PMYYRGAAAAI 87 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~----~~~~~~~~~~i 87 (139)
+|+++|.+++|||||+|++.+.... ...+ ..+.+... .+||+||.......+ ...+.++|+++
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~--~~~~-------~~v~~~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il 69 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTL--ARKT-------QAVEFNDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLI 69 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcc--Cccc-------eEEEECCC----CcccCCccccCCHHHHHHHHHHHhcCCEEE
Confidence 7999999999999999998864311 1111 12222222 269999973222111 22368899999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcC
Q 032487 88 IVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLD 129 (139)
Q Consensus 88 ~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~ 129 (139)
+|+|+++..++ +..|+..+ ....|+++++||+|+.+
T Consensus 70 ~v~d~~~~~s~--~~~~~~~~----~~~~~ii~v~nK~Dl~~ 105 (158)
T PRK15467 70 YVHGANDPESR--LPAGLLDI----GVSKRQIAVISKTDMPD 105 (158)
T ss_pred EEEeCCCcccc--cCHHHHhc----cCCCCeEEEEEccccCc
Confidence 99999988765 22343332 23568999999999865
No 215
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.67 E-value=5.1e-16 Score=115.31 Aligned_cols=119 Identities=14% Similarity=0.158 Sum_probs=82.4
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHhC-CCCcc-------------------cccceeeEEEEEEEEECCcEEEEEEEeC
Q 032487 7 KNINAKLVLLGDVGAGKSSLVLRFVKG-QFIEF-------------------QESTIGAAFFSQTLAVNDATVKFEIWDT 66 (139)
Q Consensus 7 ~~~~~ki~i~G~~~~GKssli~~l~~~-~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~i~d~ 66 (139)
..+..+|+|+|++++|||||+++|+.. ..... .....+.+.......++....++.+|||
T Consensus 8 ~~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDT 87 (527)
T TIGR00503 8 VDKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDT 87 (527)
T ss_pred hccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEEC
Confidence 456779999999999999999998642 11000 0011233344444455555689999999
Q ss_pred CCcccccccchhhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcC
Q 032487 67 AGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLD 129 (139)
Q Consensus 67 ~g~~~~~~~~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~ 129 (139)
||+..|.......+..+|++++|+|+.+... ...+.++..... .+.|+++++||+|+..
T Consensus 88 PG~~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~~~~~---~~~PiivviNKiD~~~ 146 (527)
T TIGR00503 88 PGHEDFSEDTYRTLTAVDNCLMVIDAAKGVE-TRTRKLMEVTRL---RDTPIFTFMNKLDRDI 146 (527)
T ss_pred CChhhHHHHHHHHHHhCCEEEEEEECCCCCC-HHHHHHHHHHHh---cCCCEEEEEECccccC
Confidence 9998887766667899999999999987421 123344443332 4689999999999864
No 216
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.67 E-value=2.2e-15 Score=101.82 Aligned_cols=83 Identities=18% Similarity=0.169 Sum_probs=58.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccc-------cchhhhcCCC
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHS-------LAPMYYRGAA 84 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~-------~~~~~~~~~~ 84 (139)
+++++|++|+|||||+++|.+........+....+.....+.+++ .++++||+||...... .....++++|
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad 79 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKG--AKIQLLDLPGIIEGAADGKGRGRQVIAVARTAD 79 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECC--eEEEEEECCCcccccccchhHHHHHHHhhccCC
Confidence 789999999999999999998754322222222233344455555 6799999999743321 1234678999
Q ss_pred EEEEEEECCCHH
Q 032487 85 AAIIVYDITNQA 96 (139)
Q Consensus 85 ~~i~v~~~~~~~ 96 (139)
++++|+|+.++.
T Consensus 80 ~il~V~D~t~~~ 91 (233)
T cd01896 80 LILMVLDATKPE 91 (233)
T ss_pred EEEEEecCCcch
Confidence 999999988754
No 217
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.66 E-value=1.6e-15 Score=100.21 Aligned_cols=112 Identities=18% Similarity=0.180 Sum_probs=68.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceee-EEEEEEEEEC-CcEEEEEEEeCCCcccccccc-----hhhhcC
Q 032487 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGA-AFFSQTLAVN-DATVKFEIWDTAGQERYHSLA-----PMYYRG 82 (139)
Q Consensus 10 ~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~i~d~~g~~~~~~~~-----~~~~~~ 82 (139)
++||+++|.+|+|||||+|.|.+...........+. ........+. .....+.+||+||........ ...+.+
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~~ 80 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPPDDYLEEMKFSE 80 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCCHHHHHHHhCccC
Confidence 478999999999999999999986543322222221 0000111111 112368999999975432222 222567
Q ss_pred CCEEEEEEECCCHHHHHH-HHHHHHHHHHhCCCCCeEEEEEeCCCCc
Q 032487 83 AAAAIIVYDITNQASFER-AKKWVQELQAQGNPNMVMALAGNKADLL 128 (139)
Q Consensus 83 ~~~~i~v~~~~~~~s~~~-~~~~~~~~~~~~~~~~p~ivv~~k~D~~ 128 (139)
+|+++++.+.. +.. -..|++.+... ..|+++|+||+|+.
T Consensus 81 ~d~~l~v~~~~----~~~~d~~~~~~l~~~---~~~~ilV~nK~D~~ 120 (197)
T cd04104 81 YDFFIIISSTR----FSSNDVKLAKAIQCM---GKKFYFVRTKVDRD 120 (197)
T ss_pred cCEEEEEeCCC----CCHHHHHHHHHHHHh---CCCEEEEEecccch
Confidence 89888875421 222 23555555554 57899999999984
No 218
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.66 E-value=2.9e-16 Score=101.41 Aligned_cols=118 Identities=24% Similarity=0.366 Sum_probs=73.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEE-CCcEEEEEEEeCCCcccccccchh---hhcCCCE
Q 032487 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAV-NDATVKFEIWDTAGQERYHSLAPM---YYRGAAA 85 (139)
Q Consensus 10 ~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~d~~g~~~~~~~~~~---~~~~~~~ 85 (139)
.-.++++|+.|+|||+|..+|..+...++.++. .. .. .... +...-.+.++|+||+.+.+..... +...+.+
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~-e~-n~--~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~ 78 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSM-EN-NI--AYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKG 78 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHSS---B---S-SE-EE--ECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEE
T ss_pred CceEEEEcCCCCCHHHHHHHHhcCCcCCeeccc-cC-Cc--eEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCE
Confidence 456999999999999999999998665543332 21 11 1222 222346899999999887764333 3778999
Q ss_pred EEEEEECCC-HHHHHHHHHHHHHHHHh---CCCCCeEEEEEeCCCCcCCc
Q 032487 86 AIIVYDITN-QASFERAKKWVQELQAQ---GNPNMVMALAGNKADLLDAR 131 (139)
Q Consensus 86 ~i~v~~~~~-~~s~~~~~~~~~~~~~~---~~~~~p~ivv~~k~D~~~~~ 131 (139)
+++|+|... ...+..+.+++..+... ....+|++++.||+|+..++
T Consensus 79 IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~ 128 (181)
T PF09439_consen 79 IIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAK 128 (181)
T ss_dssp EEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT--
T ss_pred EEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccC
Confidence 999999874 44555555555554432 24678999999999997754
No 219
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.66 E-value=3e-15 Score=98.61 Aligned_cols=116 Identities=18% Similarity=0.202 Sum_probs=78.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCCCCc--------------ccccceeeEEEEEEEEECCcEEEEEEEeCCCccccccc
Q 032487 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIE--------------FQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSL 75 (139)
Q Consensus 10 ~~ki~i~G~~~~GKssli~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~ 75 (139)
.++|+++|+.++|||||+++|++..... .....-|.+.......+.....++.++||||...+...
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~ 81 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN 81 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence 4789999999999999999998631000 00112233344444445445578899999999877666
Q ss_pred chhhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEeCCCCcC
Q 032487 76 APMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMV-MALAGNKADLLD 129 (139)
Q Consensus 76 ~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~~k~D~~~ 129 (139)
....+..+|++++|+|+...-. ...+.++..+... +.| ++++.||+|+..
T Consensus 82 ~~~~~~~~D~~ilVvda~~g~~-~~~~~~~~~~~~~---~~~~iIvviNK~D~~~ 132 (195)
T cd01884 82 MITGAAQMDGAILVVSATDGPM-PQTREHLLLARQV---GVPYIVVFLNKADMVD 132 (195)
T ss_pred HHHHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCcEEEEEeCCCCCC
Confidence 6667889999999999987432 2233444444443 455 789999999863
No 220
>COG1159 Era GTPase [General function prediction only]
Probab=99.66 E-value=1.6e-15 Score=103.48 Aligned_cols=121 Identities=15% Similarity=0.137 Sum_probs=79.0
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCccccc--------ccchh
Q 032487 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYH--------SLAPM 78 (139)
Q Consensus 7 ~~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~--------~~~~~ 78 (139)
..+.--++++|.||+|||||+|++++.+..-.......+-.....+.. ....++.++||||...-. .....
T Consensus 3 ~~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t-~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~ 81 (298)
T COG1159 3 KFKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVT-TDNAQIIFVDTPGIHKPKHALGELMNKAARS 81 (298)
T ss_pred CceEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEE-cCCceEEEEeCCCCCCcchHHHHHHHHHHHH
Confidence 345667999999999999999999998865432222211111222222 225889999999964332 22234
Q ss_pred hhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCCcC
Q 032487 79 YYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARK 132 (139)
Q Consensus 79 ~~~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~~~ 132 (139)
.+..+|++++|+|+++.-.- ..+..++.+.. .+.|++++.||+|......
T Consensus 82 sl~dvDlilfvvd~~~~~~~-~d~~il~~lk~---~~~pvil~iNKID~~~~~~ 131 (298)
T COG1159 82 ALKDVDLILFVVDADEGWGP-GDEFILEQLKK---TKTPVILVVNKIDKVKPKT 131 (298)
T ss_pred HhccCcEEEEEEeccccCCc-cHHHHHHHHhh---cCCCeEEEEEccccCCcHH
Confidence 57889999999999874221 12233333443 4679999999999876544
No 221
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.65 E-value=7.9e-16 Score=114.27 Aligned_cols=121 Identities=15% Similarity=0.127 Sum_probs=82.6
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHhCCCC-c---c----------------cccceeeEEEEEEEEECCcEEEEEEEeC
Q 032487 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFI-E---F----------------QESTIGAAFFSQTLAVNDATVKFEIWDT 66 (139)
Q Consensus 7 ~~~~~ki~i~G~~~~GKssli~~l~~~~~~-~---~----------------~~~~~~~~~~~~~~~~~~~~~~~~i~d~ 66 (139)
..+..+|+|+|++++|||||.++|+...-. . . ....-|.+.......+.....++.+|||
T Consensus 7 ~~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDT 86 (526)
T PRK00741 7 VAKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDT 86 (526)
T ss_pred hhcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEEC
Confidence 356779999999999999999999742100 0 0 0011122333333344444588999999
Q ss_pred CCcccccccchhhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCCc
Q 032487 67 AGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131 (139)
Q Consensus 67 ~g~~~~~~~~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~~ 131 (139)
||+.+|.......+..+|++++|+|+.+.... ..+.++.... ..++|+++++||+|+....
T Consensus 87 PG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~~~~---~~~iPiiv~iNK~D~~~a~ 147 (526)
T PRK00741 87 PGHEDFSEDTYRTLTAVDSALMVIDAAKGVEP-QTRKLMEVCR---LRDTPIFTFINKLDRDGRE 147 (526)
T ss_pred CCchhhHHHHHHHHHHCCEEEEEEecCCCCCH-HHHHHHHHHH---hcCCCEEEEEECCcccccC
Confidence 99988877666778999999999999875322 2334443333 2478999999999987643
No 222
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.65 E-value=1.5e-15 Score=108.97 Aligned_cols=119 Identities=19% Similarity=0.165 Sum_probs=82.3
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccc--------hhh
Q 032487 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLA--------PMY 79 (139)
Q Consensus 8 ~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~--------~~~ 79 (139)
...+|++++|.||+|||||+|.|++.+..- .+.-.|+++.+-...++-.++.+.+.||+|...-.... ...
T Consensus 215 r~G~kvvIiG~PNvGKSSLLNaL~~~d~AI-VTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~~ 293 (454)
T COG0486 215 REGLKVVIIGRPNVGKSSLLNALLGRDRAI-VTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERAKKA 293 (454)
T ss_pred hcCceEEEECCCCCcHHHHHHHHhcCCceE-ecCCCCCccceEEEEEEECCEEEEEEecCCcccCccHHHHHHHHHHHHH
Confidence 347899999999999999999999876543 23444555555444443334899999999975433222 235
Q ss_pred hcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCCcC
Q 032487 80 YRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARK 132 (139)
Q Consensus 80 ~~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~~~ 132 (139)
++.+|.+++|+|.+.+.+-.. ...+. ....+.|+++|.||.|+..+..
T Consensus 294 i~~ADlvL~v~D~~~~~~~~d-~~~~~----~~~~~~~~i~v~NK~DL~~~~~ 341 (454)
T COG0486 294 IEEADLVLFVLDASQPLDKED-LALIE----LLPKKKPIIVVLNKADLVSKIE 341 (454)
T ss_pred HHhCCEEEEEEeCCCCCchhh-HHHHH----hcccCCCEEEEEechhcccccc
Confidence 788999999999998522111 11111 2246789999999999987543
No 223
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.64 E-value=3.6e-15 Score=95.22 Aligned_cols=109 Identities=22% Similarity=0.327 Sum_probs=69.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCccc----------ccccchhhhc
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER----------YHSLAPMYYR 81 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~----------~~~~~~~~~~ 81 (139)
.|+++|.+|+|||||++.+.+........++.+.+........+. .+.+||+||... +......++.
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~ 77 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE 77 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence 479999999999999999996554443444444444333333332 789999999532 2222233333
Q ss_pred ---CCCEEEEEEECCCHHH--HHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcC
Q 032487 82 ---GAAAAIIVYDITNQAS--FERAKKWVQELQAQGNPNMVMALAGNKADLLD 129 (139)
Q Consensus 82 ---~~~~~i~v~~~~~~~s--~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~ 129 (139)
..+.+++++|.++..+ ...+..|+.. ...|+++++||+|+..
T Consensus 78 ~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~------~~~~vi~v~nK~D~~~ 124 (170)
T cd01876 78 NRENLKGVVLLIDSRHGPTEIDLEMLDWLEE------LGIPFLVVLTKADKLK 124 (170)
T ss_pred hChhhhEEEEEEEcCcCCCHhHHHHHHHHHH------cCCCEEEEEEchhcCC
Confidence 3568888999876532 2223334332 2478999999999854
No 224
>PRK13351 elongation factor G; Reviewed
Probab=99.63 E-value=2.8e-15 Score=114.90 Aligned_cols=119 Identities=18% Similarity=0.190 Sum_probs=82.9
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHhCCCC--------ccc--------ccceeeEEEEEEEEECCcEEEEEEEeCCCccc
Q 032487 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFI--------EFQ--------ESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71 (139)
Q Consensus 8 ~~~~ki~i~G~~~~GKssli~~l~~~~~~--------~~~--------~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~ 71 (139)
....+|+|+|+.++|||||+++|+...-. ... ....+.+.........+...++.+|||||+.+
T Consensus 6 ~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~d 85 (687)
T PRK13351 6 MQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHID 85 (687)
T ss_pred ccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHH
Confidence 45679999999999999999999853210 000 00111222222222333457899999999998
Q ss_pred ccccchhhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCC
Q 032487 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDA 130 (139)
Q Consensus 72 ~~~~~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~ 130 (139)
+...+..+++.+|++++|+|+.+.........| ..+.. .++|+++++||+|+...
T Consensus 86 f~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~-~~~~~---~~~p~iiviNK~D~~~~ 140 (687)
T PRK13351 86 FTGEVERSLRVLDGAVVVFDAVTGVQPQTETVW-RQADR---YGIPRLIFINKMDRVGA 140 (687)
T ss_pred HHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHh---cCCCEEEEEECCCCCCC
Confidence 888888889999999999999987665544444 33333 36899999999998764
No 225
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.62 E-value=2.7e-15 Score=100.55 Aligned_cols=116 Identities=21% Similarity=0.189 Sum_probs=73.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCC--Cc---------------------------ccccceeeEEEEEEEEECCcEEEEE
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKGQF--IE---------------------------FQESTIGAAFFSQTLAVNDATVKFE 62 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~~~--~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (139)
+|+++|+.++|||||+.+|+...- .. .....-|.+.......+......+.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 589999999999999999874211 00 0001122233333333434457899
Q ss_pred EEeCCCcccccccchhhhcCCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhCCCCCeEEEEEeCCCCcC
Q 032487 63 IWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQAS---FE---RAKKWVQELQAQGNPNMVMALAGNKADLLD 129 (139)
Q Consensus 63 i~d~~g~~~~~~~~~~~~~~~~~~i~v~~~~~~~s---~~---~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~ 129 (139)
+||+||+..+.......+..+|++++|+|+.+... |. .....+...... ...|+++++||+|+..
T Consensus 81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~iiivvNK~Dl~~ 151 (219)
T cd01883 81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTL--GVKQLIVAVNKMDDVT 151 (219)
T ss_pred EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHc--CCCeEEEEEEcccccc
Confidence 99999987776555566788999999999988421 11 122222222222 2368999999999873
No 226
>PRK12735 elongation factor Tu; Reviewed
Probab=99.62 E-value=8.5e-15 Score=105.88 Aligned_cols=120 Identities=16% Similarity=0.181 Sum_probs=80.3
Q ss_pred CCcceeEEEEEcCCCCcHHHHHHHHHhCC-------CC-----c--ccccceeeEEEEEEEEECCcEEEEEEEeCCCccc
Q 032487 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQ-------FI-----E--FQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71 (139)
Q Consensus 6 ~~~~~~ki~i~G~~~~GKssli~~l~~~~-------~~-----~--~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~ 71 (139)
..+..++|+++|++++|||||+++|++.. +. . .....-|.+.......+.....++.++||||+++
T Consensus 8 ~~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~ 87 (396)
T PRK12735 8 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHAD 87 (396)
T ss_pred CCCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHH
Confidence 35678999999999999999999998620 00 0 0111233344444444444456789999999987
Q ss_pred ccccchhhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEE-EEEeCCCCcC
Q 032487 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMA-LAGNKADLLD 129 (139)
Q Consensus 72 ~~~~~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~i-vv~~k~D~~~ 129 (139)
|.......+..+|++++|+|+.+... ...++++..+... ++|.+ ++.||+|+.+
T Consensus 88 f~~~~~~~~~~aD~~llVvda~~g~~-~qt~e~l~~~~~~---gi~~iivvvNK~Dl~~ 142 (396)
T PRK12735 88 YVKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQV---GVPYIVVFLNKCDMVD 142 (396)
T ss_pred HHHHHHhhhccCCEEEEEEECCCCCc-hhHHHHHHHHHHc---CCCeEEEEEEecCCcc
Confidence 76555566778999999999987422 2233444444433 46754 6799999864
No 227
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.61 E-value=6.8e-16 Score=94.62 Aligned_cols=118 Identities=25% Similarity=0.412 Sum_probs=94.8
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEEE
Q 032487 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (139)
Q Consensus 8 ~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 87 (139)
++..+|+++|..|+||++++.++.-.+... ..|++|+ .+..+.+++ ..+++||.+|+-..+..|+-++.+.|.+|
T Consensus 16 e~e~rililgldGaGkttIlyrlqvgevvt-tkPtigf--nve~v~yKN--Lk~~vwdLggqtSirPyWRcYy~dt~avI 90 (182)
T KOG0072|consen 16 EREMRILILGLDGAGKTTILYRLQVGEVVT-TKPTIGF--NVETVPYKN--LKFQVWDLGGQTSIRPYWRCYYADTDAVI 90 (182)
T ss_pred ccceEEEEeeccCCCeeEEEEEcccCcccc-cCCCCCc--Ccccccccc--ccceeeEccCcccccHHHHHHhcccceEE
Confidence 478899999999999999988887665543 5566664 456666666 88999999999999999999999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHH-hCCCCCeEEEEEeCCCCcCC
Q 032487 88 IVYDITNQASFERAKKWVQELQA-QGNPNMVMALAGNKADLLDA 130 (139)
Q Consensus 88 ~v~~~~~~~s~~~~~~~~~~~~~-~~~~~~p~ivv~~k~D~~~~ 130 (139)
+|+|..|++........+..+.+ .......+++++||.|....
T Consensus 91 yVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~ 134 (182)
T KOG0072|consen 91 YVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGA 134 (182)
T ss_pred EEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhh
Confidence 99999998877666554444444 33456789999999998654
No 228
>PLN03126 Elongation factor Tu; Provisional
Probab=99.61 E-value=1.3e-14 Score=106.78 Aligned_cols=120 Identities=18% Similarity=0.178 Sum_probs=82.5
Q ss_pred CCcceeEEEEEcCCCCcHHHHHHHHHhCCC------Cc--------ccccceeeEEEEEEEEECCcEEEEEEEeCCCccc
Q 032487 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQF------IE--------FQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71 (139)
Q Consensus 6 ~~~~~~ki~i~G~~~~GKssli~~l~~~~~------~~--------~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~ 71 (139)
.++..++++++|+.++|||||+++|++... .. .....-|.+.......+.....++.++|+||+++
T Consensus 77 ~~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~ 156 (478)
T PLN03126 77 RKKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHAD 156 (478)
T ss_pred ccCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHH
Confidence 456789999999999999999999995211 00 0122233333333333433446889999999988
Q ss_pred ccccchhhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEeCCCCcC
Q 032487 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMV-MALAGNKADLLD 129 (139)
Q Consensus 72 ~~~~~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~~k~D~~~ 129 (139)
|.......+..+|++++|+|+.+... ...++++..+... ++| ++++.||+|+.+
T Consensus 157 f~~~~~~g~~~aD~ailVVda~~G~~-~qt~e~~~~~~~~---gi~~iIvvvNK~Dl~~ 211 (478)
T PLN03126 157 YVKNMITGAAQMDGAILVVSGADGPM-PQTKEHILLAKQV---GVPNMVVFLNKQDQVD 211 (478)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCeEEEEEecccccC
Confidence 76655666788999999999887533 2334555555543 466 788999999865
No 229
>CHL00071 tufA elongation factor Tu
Probab=99.61 E-value=1.9e-14 Score=104.45 Aligned_cols=121 Identities=16% Similarity=0.173 Sum_probs=82.7
Q ss_pred CCcceeEEEEEcCCCCcHHHHHHHHHhCCCCc--------------ccccceeeEEEEEEEEECCcEEEEEEEeCCCccc
Q 032487 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIE--------------FQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71 (139)
Q Consensus 6 ~~~~~~ki~i~G~~~~GKssli~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~ 71 (139)
+++..++++++|++++|||||+++|++..... .....-|.+.......+.....++.+.|+||+..
T Consensus 8 ~~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~ 87 (409)
T CHL00071 8 RKKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHAD 87 (409)
T ss_pred CCCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHH
Confidence 45778999999999999999999999642110 0111123333333344444456789999999887
Q ss_pred ccccchhhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEeCCCCcCC
Q 032487 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMV-MALAGNKADLLDA 130 (139)
Q Consensus 72 ~~~~~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~~k~D~~~~ 130 (139)
|.......+..+|++++|+|+.+... ...++++..+... +.| ++++.||+|+.+.
T Consensus 88 ~~~~~~~~~~~~D~~ilVvda~~g~~-~qt~~~~~~~~~~---g~~~iIvvvNK~D~~~~ 143 (409)
T CHL00071 88 YVKNMITGAAQMDGAILVVSAADGPM-PQTKEHILLAKQV---GVPNIVVFLNKEDQVDD 143 (409)
T ss_pred HHHHHHHHHHhCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCEEEEEEEccCCCCH
Confidence 76655666788999999999986432 2334444444433 467 7789999998753
No 230
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.61 E-value=1.5e-15 Score=108.69 Aligned_cols=112 Identities=20% Similarity=0.175 Sum_probs=74.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEE--EEEEEEECCcEEEEEEEeCCCccccc---------ccchhh
Q 032487 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQERYH---------SLAPMY 79 (139)
Q Consensus 11 ~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~d~~g~~~~~---------~~~~~~ 79 (139)
..|+|+|.||+|||||+|+|.+.+..- .....|+++ ........+ ..|.++||+|.+... ......
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AI-V~D~pGvTRDr~y~~~~~~~--~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~A 80 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAI-VSDTPGVTRDRIYGDAEWLG--REFILIDTGGLDDGDEDELQELIREQALIA 80 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeE-eecCCCCccCCccceeEEcC--ceEEEEECCCCCcCCchHHHHHHHHHHHHH
Confidence 579999999999999999999877543 222333333 333333444 569999999976432 122345
Q ss_pred hcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcC
Q 032487 80 YRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLD 129 (139)
Q Consensus 80 ~~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~ 129 (139)
+..||++++|+|+...-+-. -+...+.++ ..+.|+++|+||+|-..
T Consensus 81 i~eADvilfvVD~~~Git~~-D~~ia~~Lr---~~~kpviLvvNK~D~~~ 126 (444)
T COG1160 81 IEEADVILFVVDGREGITPA-DEEIAKILR---RSKKPVILVVNKIDNLK 126 (444)
T ss_pred HHhCCEEEEEEeCCCCCCHH-HHHHHHHHH---hcCCCEEEEEEcccCch
Confidence 77899999999998743311 112222233 24689999999999764
No 231
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.61 E-value=8.8e-15 Score=112.17 Aligned_cols=120 Identities=17% Similarity=0.044 Sum_probs=81.9
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHhCCCCc----ccc------------cceeeEEEEEEEEECCcEEEEEEEeCCCcc
Q 032487 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIE----FQE------------STIGAAFFSQTLAVNDATVKFEIWDTAGQE 70 (139)
Q Consensus 7 ~~~~~ki~i~G~~~~GKssli~~l~~~~~~~----~~~------------~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~ 70 (139)
..+..+|+|+|++++|||||+++|+...-.. ... ...|.+.......+...+.++.+|||||+.
T Consensus 7 ~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~ 86 (689)
T TIGR00484 7 LNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHV 86 (689)
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCc
Confidence 3456699999999999999999997422110 000 012233333333333344789999999998
Q ss_pred cccccchhhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCC
Q 032487 71 RYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDA 130 (139)
Q Consensus 71 ~~~~~~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~ 130 (139)
++.......++.+|++++|+|+.+....... .++..+.. .+.|+++++||+|+...
T Consensus 87 ~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~~~~~~---~~~p~ivviNK~D~~~~ 142 (689)
T TIGR00484 87 DFTVEVERSLRVLDGAVAVLDAVGGVQPQSE-TVWRQANR---YEVPRIAFVNKMDKTGA 142 (689)
T ss_pred chhHHHHHHHHHhCEEEEEEeCCCCCChhHH-HHHHHHHH---cCCCEEEEEECCCCCCC
Confidence 8777777889999999999999876444322 33333333 35889999999998754
No 232
>PRK12736 elongation factor Tu; Reviewed
Probab=99.60 E-value=1.7e-14 Score=104.28 Aligned_cols=119 Identities=17% Similarity=0.181 Sum_probs=80.6
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHhCCCCc--------------ccccceeeEEEEEEEEECCcEEEEEEEeCCCcccc
Q 032487 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIE--------------FQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERY 72 (139)
Q Consensus 7 ~~~~~ki~i~G~~~~GKssli~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~ 72 (139)
.+..++|+++|+.++|||||+++|++..... .....-|.+.......+.....++.++|+||+++|
T Consensus 9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f 88 (394)
T PRK12736 9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADY 88 (394)
T ss_pred CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHH
Confidence 4668999999999999999999998631100 01112333444444455444567899999999877
Q ss_pred cccchhhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEeCCCCcC
Q 032487 73 HSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMV-MALAGNKADLLD 129 (139)
Q Consensus 73 ~~~~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~~k~D~~~ 129 (139)
.......+..+|++++|+|+++... ...++++..+... +.| ++++.||+|+.+
T Consensus 89 ~~~~~~~~~~~d~~llVvd~~~g~~-~~t~~~~~~~~~~---g~~~~IvviNK~D~~~ 142 (394)
T PRK12736 89 VKNMITGAAQMDGAILVVAATDGPM-PQTREHILLARQV---GVPYLVVFLNKVDLVD 142 (394)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCc-hhHHHHHHHHHHc---CCCEEEEEEEecCCcc
Confidence 6655555678999999999986422 2233444444433 466 678999999874
No 233
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.59 E-value=2.9e-14 Score=98.90 Aligned_cols=128 Identities=11% Similarity=0.063 Sum_probs=74.5
Q ss_pred CCCcceeEEEEEcCCCCcHHHHHHHHHhCCCCcc-cccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchh-----
Q 032487 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEF-QESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPM----- 78 (139)
Q Consensus 5 ~~~~~~~ki~i~G~~~~GKssli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~----- 78 (139)
+.+...++|+++|.+|+||||++|+|++...... .....+..........++ .++.++||||..........
T Consensus 33 ~~~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G--~~l~VIDTPGL~d~~~~~e~~~~~i 110 (313)
T TIGR00991 33 EEDVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAG--FTLNIIDTPGLIEGGYINDQAVNII 110 (313)
T ss_pred cccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEECCCCCchHHHHHHHHHHH
Confidence 3456788999999999999999999998764321 111111111112222333 78999999997643221111
Q ss_pred --hh--cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEeCCCCcCCcCCC
Q 032487 79 --YY--RGAAAAIIVYDITNQASFERAKKWVQELQAQGN--PNMVMALAGNKADLLDARKVT 134 (139)
Q Consensus 79 --~~--~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~~k~D~~~~~~v~ 134 (139)
++ ..+|++++|..++.....+.-+..++.+..... .-.+.+++.|++|.......+
T Consensus 111 k~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~pd~~~ 172 (313)
T TIGR00991 111 KRFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPPDGLE 172 (313)
T ss_pred HHHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCCCCCCC
Confidence 11 258999999665432111112234444444321 234689999999976544344
No 234
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.59 E-value=2.7e-14 Score=103.28 Aligned_cols=121 Identities=15% Similarity=0.173 Sum_probs=79.8
Q ss_pred CCcceeEEEEEcCCCCcHHHHHHHHHhCCCC------------c--ccccceeeEEEEEEEEECCcEEEEEEEeCCCccc
Q 032487 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFI------------E--FQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71 (139)
Q Consensus 6 ~~~~~~ki~i~G~~~~GKssli~~l~~~~~~------------~--~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~ 71 (139)
+.++.++|+++|+.++|||||+++|++.... . .....-|.+.......+.....++.+|||||+++
T Consensus 8 ~~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~ 87 (394)
T TIGR00485 8 RTKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHAD 87 (394)
T ss_pred CCCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHH
Confidence 3567899999999999999999999742100 0 0011223334444455555557899999999988
Q ss_pred ccccchhhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeE-EEEEeCCCCcCC
Q 032487 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVM-ALAGNKADLLDA 130 (139)
Q Consensus 72 ~~~~~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~-ivv~~k~D~~~~ 130 (139)
|.......+..+|++++|+|+.+.-. ...++++..+... +.|. +++.||+|+.+.
T Consensus 88 f~~~~~~~~~~~D~~ilVvda~~g~~-~qt~e~l~~~~~~---gi~~iIvvvNK~Dl~~~ 143 (394)
T TIGR00485 88 YVKNMITGAAQMDGAILVVSATDGPM-PQTREHILLARQV---GVPYIVVFLNKCDMVDD 143 (394)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCEEEEEEEecccCCH
Confidence 76544455677899999999987422 1223344444433 4564 578999998753
No 235
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.59 E-value=1.5e-14 Score=103.66 Aligned_cols=120 Identities=20% Similarity=0.217 Sum_probs=82.9
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccc-----------h
Q 032487 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLA-----------P 77 (139)
Q Consensus 9 ~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~-----------~ 77 (139)
..+|++++|.|++|||||+|+|++.+-.- ..+..|+++.+....+....-++.++||+|...-..+. .
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~I-v~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~ 255 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVI-VSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTL 255 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEE-ecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhH
Confidence 57999999999999999999999876442 34455555555554444333678999999963221111 2
Q ss_pred hhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCCcCC
Q 032487 78 MYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKV 133 (139)
Q Consensus 78 ~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~~~v 133 (139)
.....++++++|+|+..+.+-. -.+....+.. ...++++|.||.|+.+..+.
T Consensus 256 ~aI~~a~vvllviDa~~~~~~q-D~~ia~~i~~---~g~~~vIvvNKWDl~~~~~~ 307 (444)
T COG1160 256 KAIERADVVLLVIDATEGISEQ-DLRIAGLIEE---AGRGIVIVVNKWDLVEEDEA 307 (444)
T ss_pred hHHhhcCEEEEEEECCCCchHH-HHHHHHHHHH---cCCCeEEEEEccccCCchhh
Confidence 3467799999999999875532 2333333333 46789999999998776433
No 236
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.58 E-value=1.1e-14 Score=99.64 Aligned_cols=122 Identities=14% Similarity=0.144 Sum_probs=83.8
Q ss_pred CCCcceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCccc------------c
Q 032487 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER------------Y 72 (139)
Q Consensus 5 ~~~~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~------------~ 72 (139)
+++.+.+.++++|.||+|||||.|.+.+.+..........+.. ...--+.....++.++||||.-. +
T Consensus 67 ~e~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~-~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~ 145 (379)
T KOG1423|consen 67 EEAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRH-RILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSV 145 (379)
T ss_pred hhcceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceee-eeeEEEecCceEEEEecCCcccccchhhhHHHHHHh
Confidence 3467889999999999999999999999998876555544322 22222344458999999999521 1
Q ss_pred cccchhhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCC
Q 032487 73 HSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDA 130 (139)
Q Consensus 73 ~~~~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~ 130 (139)
..-....+..+|.+++++|+.+....- -...+..+..+ ..+|-++|+||.|....
T Consensus 146 lq~~~~a~q~AD~vvVv~Das~tr~~l-~p~vl~~l~~y--s~ips~lvmnkid~~k~ 200 (379)
T KOG1423|consen 146 LQNPRDAAQNADCVVVVVDASATRTPL-HPRVLHMLEEY--SKIPSILVMNKIDKLKQ 200 (379)
T ss_pred hhCHHHHHhhCCEEEEEEeccCCcCcc-ChHHHHHHHHH--hcCCceeeccchhcchh
Confidence 112234577899999999999732210 12344444444 47889999999997544
No 237
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.58 E-value=1.7e-14 Score=104.64 Aligned_cols=121 Identities=16% Similarity=0.142 Sum_probs=77.3
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHhCCCCc---ccc--cceeeEEEEE--------------EEE-E-CC------cEEE
Q 032487 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIE---FQE--STIGAAFFSQ--------------TLA-V-ND------ATVK 60 (139)
Q Consensus 8 ~~~~ki~i~G~~~~GKssli~~l~~~~~~~---~~~--~~~~~~~~~~--------------~~~-~-~~------~~~~ 60 (139)
+..++|+++|+.++|||||++.|.+..... +.. .+....+... +.. . ++ ....
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR 81 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence 568899999999999999999997542211 110 1111111000 000 0 11 1357
Q ss_pred EEEEeCCCcccccccchhhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCC
Q 032487 61 FEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDA 130 (139)
Q Consensus 61 ~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~ 130 (139)
+.+||+||++.|...+......+|++++|+|++++......++.+..+... ...|+++++||+|+.+.
T Consensus 82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~--gi~~iIVvvNK~Dl~~~ 149 (406)
T TIGR03680 82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEII--GIKNIVIVQNKIDLVSK 149 (406)
T ss_pred EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHc--CCCeEEEEEEccccCCH
Confidence 999999999988776667777899999999998753112233344444333 23478999999998753
No 238
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.57 E-value=1.9e-14 Score=104.38 Aligned_cols=126 Identities=17% Similarity=0.136 Sum_probs=76.1
Q ss_pred CCCCCcceeEEEEEcCCCCcHHHHHHHHHhCCCC---ccc--ccceeeEEEEEEE--------------E--EC--C---
Q 032487 3 TTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFI---EFQ--ESTIGAAFFSQTL--------------A--VN--D--- 56 (139)
Q Consensus 3 ~~~~~~~~~ki~i~G~~~~GKssli~~l~~~~~~---~~~--~~~~~~~~~~~~~--------------~--~~--~--- 56 (139)
+.+.++..++|+++|+.++|||||+..|.+.... .+. ..+....+..... . .+ +
T Consensus 2 ~~~~~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (411)
T PRK04000 2 MWEKVQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSET 81 (411)
T ss_pred CcccCCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCcccccccccccccccccc
Confidence 3456778899999999999999999999653111 111 1111111100000 0 00 0
Q ss_pred -cEEEEEEEeCCCcccccccchhhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCC
Q 032487 57 -ATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDA 130 (139)
Q Consensus 57 -~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~ 130 (139)
....+.+||+||++.+..........+|++++|+|+.++..-......+..+... ...|+++|+||+|+.+.
T Consensus 82 ~~~~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~--~i~~iiVVlNK~Dl~~~ 154 (411)
T PRK04000 82 ELLRRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDII--GIKNIVIVQNKIDLVSK 154 (411)
T ss_pred ccccEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHc--CCCcEEEEEEeeccccc
Confidence 1357999999999877654444456689999999999643111112222333322 22468999999998764
No 239
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.57 E-value=2.5e-14 Score=98.21 Aligned_cols=119 Identities=18% Similarity=0.171 Sum_probs=88.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccc-------hhhhcCC
Q 032487 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLA-------PMYYRGA 83 (139)
Q Consensus 11 ~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~-------~~~~~~~ 83 (139)
..+-++|.|++|||||++.+.+.+.....++++.......++.+++. .++++-|.||.-+-.... -.+++.|
T Consensus 197 advGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf-~q~tVADiPGiI~GAh~nkGlG~~FLrHiER~ 275 (366)
T KOG1489|consen 197 ADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDF-SQITVADIPGIIEGAHMNKGLGYKFLRHIERC 275 (366)
T ss_pred cccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeecccc-ceeEeccCccccccccccCcccHHHHHHHHhh
Confidence 35779999999999999999998765544454444444445555543 349999999963322222 2346789
Q ss_pred CEEEEEEECCCH---HHHHHHHHHHHHHHHhC--CCCCeEEEEEeCCCCcCC
Q 032487 84 AAAIIVYDITNQ---ASFERAKKWVQELQAQG--NPNMVMALAGNKADLLDA 130 (139)
Q Consensus 84 ~~~i~v~~~~~~---~s~~~~~~~~~~~~~~~--~~~~p~ivv~~k~D~~~~ 130 (139)
+.+++|+|++.+ ..++.++.+..++..+. ..+.|.++|+||+|++++
T Consensus 276 ~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~ea 327 (366)
T KOG1489|consen 276 KGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEA 327 (366)
T ss_pred ceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhH
Confidence 999999999998 88888888888877754 368899999999999654
No 240
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.56 E-value=1.4e-14 Score=111.36 Aligned_cols=119 Identities=20% Similarity=0.184 Sum_probs=80.5
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHhC---------------CCCcc---cccceeeEEEEEEEEECCcEEEEEEEeCCC
Q 032487 7 KNINAKLVLLGDVGAGKSSLVLRFVKG---------------QFIEF---QESTIGAAFFSQTLAVNDATVKFEIWDTAG 68 (139)
Q Consensus 7 ~~~~~ki~i~G~~~~GKssli~~l~~~---------------~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g 68 (139)
.....+|+++|+.++|||||+++|+.. .+.+. ...++...........++..+++.+|||||
T Consensus 16 ~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG 95 (720)
T TIGR00490 16 PKFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPG 95 (720)
T ss_pred cccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCC
Confidence 345679999999999999999999753 11110 111222222222334566678999999999
Q ss_pred cccccccchhhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcC
Q 032487 69 QERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLD 129 (139)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~ 129 (139)
+.++.......+..+|++++|+|+.+....+....| ..+. ..+.|+++++||+|...
T Consensus 96 ~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~-~~~~---~~~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 96 HVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVL-RQAL---KENVKPVLFINKVDRLI 152 (720)
T ss_pred ccccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHH-HHHH---HcCCCEEEEEEChhccc
Confidence 988877667789999999999998874332222222 2222 23567889999999864
No 241
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.56 E-value=1.1e-13 Score=94.24 Aligned_cols=125 Identities=13% Similarity=0.082 Sum_probs=72.3
Q ss_pred CCcceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccc---c-------
Q 032487 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHS---L------- 75 (139)
Q Consensus 6 ~~~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~---~------- 75 (139)
.....++|+++|.+|+|||||+|+|++........ ..+.+..............+.+|||||...... .
T Consensus 27 ~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~-~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~ 105 (249)
T cd01853 27 ELDFSLTILVLGKTGVGKSSTINSIFGERKAATSA-FQSETLRVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKILSS 105 (249)
T ss_pred hccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCC-CCCceEEEEEEEEEECCeEEEEEECCCcCcchhhHHHHHHHHHH
Confidence 34668999999999999999999999876543221 111111122222222236789999999754421 1
Q ss_pred chhhhc--CCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEeCCCCcCCc
Q 032487 76 APMYYR--GAAAAIIVYDITNQASFERAKKWVQELQAQGNP--NMVMALAGNKADLLDAR 131 (139)
Q Consensus 76 ~~~~~~--~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~--~~p~ivv~~k~D~~~~~ 131 (139)
...++. ..++++++..++....-..-...++.+...... -.++++|.||+|.....
T Consensus 106 I~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p~ 165 (249)
T cd01853 106 IKRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSPPD 165 (249)
T ss_pred HHHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCCCC
Confidence 111232 468888887665422111122344444432221 24699999999975443
No 242
>COG2262 HflX GTPases [General function prediction only]
Probab=99.56 E-value=8.5e-14 Score=98.58 Aligned_cols=122 Identities=21% Similarity=0.215 Sum_probs=93.1
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCc---------ccccccch
Q 032487 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQ---------ERYHSLAP 77 (139)
Q Consensus 7 ~~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~---------~~~~~~~~ 77 (139)
+.....+.++|..|+|||||+|.|.+.........+...+..++.+...+ ...+.+-||.|. +.|++...
T Consensus 189 ~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~-g~~vlLtDTVGFI~~LP~~LV~AFksTLE 267 (411)
T COG2262 189 RSGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGD-GRKVLLTDTVGFIRDLPHPLVEAFKSTLE 267 (411)
T ss_pred ccCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCC-CceEEEecCccCcccCChHHHHHHHHHHH
Confidence 34567899999999999999999998776655555555556667777764 356888899984 22333222
Q ss_pred hhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCC
Q 032487 78 MYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDA 130 (139)
Q Consensus 78 ~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~ 130 (139)
....+|.++.|+|++++...+.++...+-+....-...|+++|.||+|+...
T Consensus 268 -E~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~ 319 (411)
T COG2262 268 -EVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLED 319 (411)
T ss_pred -HhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCc
Confidence 2467999999999999988888888877777765667999999999996544
No 243
>PRK00049 elongation factor Tu; Reviewed
Probab=99.55 E-value=1.2e-13 Score=99.84 Aligned_cols=120 Identities=15% Similarity=0.164 Sum_probs=81.8
Q ss_pred CCcceeEEEEEcCCCCcHHHHHHHHHhCCCC---c-----------ccccceeeEEEEEEEEECCcEEEEEEEeCCCccc
Q 032487 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFI---E-----------FQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71 (139)
Q Consensus 6 ~~~~~~ki~i~G~~~~GKssli~~l~~~~~~---~-----------~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~ 71 (139)
..+..++|+++|+.++|||||+++|++.... . .....-|.+.......+.....++.+.||||+.+
T Consensus 8 ~~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~ 87 (396)
T PRK00049 8 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHAD 87 (396)
T ss_pred CCCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHH
Confidence 3477899999999999999999999863110 0 0111233344444444544456789999999987
Q ss_pred ccccchhhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEE-EEEeCCCCcC
Q 032487 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMA-LAGNKADLLD 129 (139)
Q Consensus 72 ~~~~~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~i-vv~~k~D~~~ 129 (139)
|.......+..+|++++|+|+.++.. ...++++..+... +.|.+ ++.||+|+.+
T Consensus 88 f~~~~~~~~~~aD~~llVVDa~~g~~-~qt~~~~~~~~~~---g~p~iiVvvNK~D~~~ 142 (396)
T PRK00049 88 YVKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQV---GVPYIVVFLNKCDMVD 142 (396)
T ss_pred HHHHHHhhhccCCEEEEEEECCCCCc-hHHHHHHHHHHHc---CCCEEEEEEeecCCcc
Confidence 76655566789999999999987432 2234444544443 46765 6899999864
No 244
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.55 E-value=4.8e-14 Score=93.04 Aligned_cols=116 Identities=21% Similarity=0.188 Sum_probs=71.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEE--EEEEEEECCcEEEEEEEeCCCcccccc----c-------ch
Q 032487 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQERYHS----L-------AP 77 (139)
Q Consensus 11 ~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~d~~g~~~~~~----~-------~~ 77 (139)
++|+++|.+|+||||++|.+++.+.........+.+. .......++ .++.++||||...... . ..
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~viDTPG~~d~~~~~~~~~~~i~~~~~ 78 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDG--RRVNVIDTPGLFDTSVSPEQLSKEIVRCLS 78 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECC--eEEEEEECcCCCCccCChHHHHHHHHHHHH
Confidence 4799999999999999999998765432221112222 222223344 6799999999654321 0 01
Q ss_pred hhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEeCCCCcCC
Q 032487 78 MYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGN--PNMVMALAGNKADLLDA 130 (139)
Q Consensus 78 ~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~~k~D~~~~ 130 (139)
....++|++++|+++.+. + ......++.+..... .-.+++++.|+.|....
T Consensus 79 ~~~~g~~~illVi~~~~~-t-~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~ 131 (196)
T cd01852 79 LSAPGPHAFLLVVPLGRF-T-EEEEQAVETLQELFGEKVLDHTIVLFTRGDDLEG 131 (196)
T ss_pred hcCCCCEEEEEEEECCCc-C-HHHHHHHHHHHHHhChHhHhcEEEEEECccccCC
Confidence 124568999999998862 2 122334444444322 23578999999996554
No 245
>PLN03127 Elongation factor Tu; Provisional
Probab=99.55 E-value=1.3e-13 Score=100.86 Aligned_cols=119 Identities=16% Similarity=0.188 Sum_probs=80.1
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHhC------CCC------c--ccccceeeEEEEEEEEECCcEEEEEEEeCCCcccc
Q 032487 7 KNINAKLVLLGDVGAGKSSLVLRFVKG------QFI------E--FQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERY 72 (139)
Q Consensus 7 ~~~~~ki~i~G~~~~GKssli~~l~~~------~~~------~--~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~ 72 (139)
.+..++|+++|+.++|||||+++|.+. ... . .....-|.+.......+.....++.++||||+.+|
T Consensus 58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~f 137 (447)
T PLN03127 58 TKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHADY 137 (447)
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccch
Confidence 466889999999999999999999732 100 0 01112333444444455555578899999999876
Q ss_pred cccchhhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEeCCCCcC
Q 032487 73 HSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMV-MALAGNKADLLD 129 (139)
Q Consensus 73 ~~~~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~~k~D~~~ 129 (139)
.......+..+|++++|+|+++... ...++.+..+... +.| ++++.||+|+.+
T Consensus 138 ~~~~~~g~~~aD~allVVda~~g~~-~qt~e~l~~~~~~---gip~iIvviNKiDlv~ 191 (447)
T PLN03127 138 VKNMITGAAQMDGGILVVSAPDGPM-PQTKEHILLARQV---GVPSLVVFLNKVDVVD 191 (447)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCc-hhHHHHHHHHHHc---CCCeEEEEEEeeccCC
Confidence 5544455667999999999876432 2234455555543 467 578899999875
No 246
>PRK12739 elongation factor G; Reviewed
Probab=99.53 E-value=5.5e-14 Score=107.84 Aligned_cols=119 Identities=16% Similarity=0.137 Sum_probs=79.8
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHhCCCC--c---cc-----------ccceeeEEEEEEEEECCcEEEEEEEeCCCccc
Q 032487 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFI--E---FQ-----------ESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71 (139)
Q Consensus 8 ~~~~ki~i~G~~~~GKssli~~l~~~~~~--~---~~-----------~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~ 71 (139)
.+..+|+|+|+.++|||||+++|+...-. . .. ...-|.+.......+.....++.++||||+.+
T Consensus 6 ~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~ 85 (691)
T PRK12739 6 EKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVD 85 (691)
T ss_pred cCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHH
Confidence 45678999999999999999999752110 0 00 01112222222222322347899999999987
Q ss_pred ccccchhhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCC
Q 032487 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDA 130 (139)
Q Consensus 72 ~~~~~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~ 130 (139)
+...+...+..+|++++|+|+.+...... +..+..+.. .++|++++.||+|+...
T Consensus 86 f~~e~~~al~~~D~~ilVvDa~~g~~~qt-~~i~~~~~~---~~~p~iv~iNK~D~~~~ 140 (691)
T PRK12739 86 FTIEVERSLRVLDGAVAVFDAVSGVEPQS-ETVWRQADK---YGVPRIVFVNKMDRIGA 140 (691)
T ss_pred HHHHHHHHHHHhCeEEEEEeCCCCCCHHH-HHHHHHHHH---cCCCEEEEEECCCCCCC
Confidence 77767778899999999999987643222 233333433 35789999999998754
No 247
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.52 E-value=2.8e-13 Score=102.42 Aligned_cols=114 Identities=18% Similarity=0.184 Sum_probs=73.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC---CCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEEEE
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKGQ---FIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAII 88 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 88 (139)
-|.++|+.++|||||+++|.+.. +..+..+.+..+.........+ ...+.+||+||++.|.......+.++|++++
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~-g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lL 80 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPD-GRVLGFIDVPGHEKFLSNMLAGVGGIDHALL 80 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCC-CcEEEEEECCCHHHHHHHHHHHhhcCCEEEE
Confidence 47899999999999999999643 2222222333222222222222 2458999999999886655666889999999
Q ss_pred EEECCCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEeCCCCcCC
Q 032487 89 VYDITNQASFERAKKWVQELQAQGNPNMV-MALAGNKADLLDA 130 (139)
Q Consensus 89 v~~~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~~k~D~~~~ 130 (139)
|+|+++... ....+.+..+... +.| +++|+||+|+.+.
T Consensus 81 VVda~eg~~-~qT~ehl~il~~l---gi~~iIVVlNKiDlv~~ 119 (614)
T PRK10512 81 VVACDDGVM-AQTREHLAILQLT---GNPMLTVALTKADRVDE 119 (614)
T ss_pred EEECCCCCc-HHHHHHHHHHHHc---CCCeEEEEEECCccCCH
Confidence 999987321 1223333333333 244 6899999999753
No 248
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=99.51 E-value=1.7e-13 Score=83.67 Aligned_cols=97 Identities=26% Similarity=0.382 Sum_probs=72.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCcccc-cceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEEEEE
Q 032487 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQE-STIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIV 89 (139)
Q Consensus 11 ~ki~i~G~~~~GKssli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v 89 (139)
+|++++|..|+|||+++.++....+...+. ++.+ +........+.++.+++|
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~---------------------------~~~~~~~~~~s~~~~~~v 53 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG---------------------------IDVYDPTSYESFDVVLQC 53 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhh---------------------------hhhccccccCCCCEEEEE
Confidence 589999999999999999997766543222 2222 233344556778999999
Q ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCCcCCCcc
Q 032487 90 YDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAE 136 (139)
Q Consensus 90 ~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~~~v~~~ 136 (139)
|+..+..+++.+ |...+....+.++|.++++||.|+.+.+++..+
T Consensus 54 ~~~~~~~s~~~~--~~~~i~~~~k~dl~~~~~~nk~dl~~~~~~~~~ 98 (124)
T smart00010 54 WRVDDRDSADNK--NVPEVLVGNKSDLPILVGGNRDVLEEERQVATE 98 (124)
T ss_pred EEccCHHHHHHH--hHHHHHhcCCCCCcEEEEeechhhHhhCcCCHH
Confidence 999999998765 777776655567899999999998655455443
No 249
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.51 E-value=2.2e-13 Score=100.45 Aligned_cols=120 Identities=22% Similarity=0.222 Sum_probs=76.2
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHhCCCCccc-------------cc------------------ceeeEEEEEEEEEC
Q 032487 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQ-------------ES------------------TIGAAFFSQTLAVN 55 (139)
Q Consensus 7 ~~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~-------------~~------------------~~~~~~~~~~~~~~ 55 (139)
.+..++|+++|+.++|||||+++|+...-.-.. .. .-|.+.......+.
T Consensus 24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~ 103 (474)
T PRK05124 24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFS 103 (474)
T ss_pred ccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEec
Confidence 356799999999999999999999854211000 00 01112222223333
Q ss_pred CcEEEEEEEeCCCcccccccchhhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcC
Q 032487 56 DATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLD 129 (139)
Q Consensus 56 ~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~ 129 (139)
....++.++||||++.|.......+..+|++++|+|+.+...- ..++.+..+.... ..|++++.||+|+.+
T Consensus 104 ~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~-qt~~~~~l~~~lg--~~~iIvvvNKiD~~~ 174 (474)
T PRK05124 104 TEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLD-QTRRHSFIATLLG--IKHLVVAVNKMDLVD 174 (474)
T ss_pred cCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccc-cchHHHHHHHHhC--CCceEEEEEeecccc
Confidence 4456889999999988765445557899999999999864321 1112222222221 247899999999874
No 250
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.51 E-value=3.5e-13 Score=98.70 Aligned_cols=119 Identities=16% Similarity=0.165 Sum_probs=82.8
Q ss_pred CCcceeEEEEEcCCCCcHHHHHHHHHhCCC--Cc---------------------------ccccceeeEEEEEEEEECC
Q 032487 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQF--IE---------------------------FQESTIGAAFFSQTLAVND 56 (139)
Q Consensus 6 ~~~~~~ki~i~G~~~~GKssli~~l~~~~~--~~---------------------------~~~~~~~~~~~~~~~~~~~ 56 (139)
.++..++++++|+.++|||||+.+|+...- .. .....-|.+.......+..
T Consensus 3 ~~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~ 82 (447)
T PLN00043 3 KEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFET 82 (447)
T ss_pred CCCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecC
Confidence 356789999999999999999998874211 00 0011123333334444555
Q ss_pred cEEEEEEEeCCCcccccccchhhhcCCCEEEEEEECCCHHHH-------HHHHHHHHHHHHhCCCCC-eEEEEEeCCCCc
Q 032487 57 ATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASF-------ERAKKWVQELQAQGNPNM-VMALAGNKADLL 128 (139)
Q Consensus 57 ~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~~~~~~~s~-------~~~~~~~~~~~~~~~~~~-p~ivv~~k~D~~ 128 (139)
....+.++|+||+++|.......+..+|++++|+|+.+. .| ...++.+..+... .+ +++++.||+|+.
T Consensus 83 ~~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~~~~~~~---gi~~iIV~vNKmD~~ 158 (447)
T PLN00043 83 TKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHALLAFTL---GVKQMICCCNKMDAT 158 (447)
T ss_pred CCEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHHHHHHHHHc---CCCcEEEEEEcccCC
Confidence 568899999999999988777888999999999999873 33 2344444444433 45 578899999976
No 251
>PRK00007 elongation factor G; Reviewed
Probab=99.51 E-value=2.7e-13 Score=104.10 Aligned_cols=120 Identities=16% Similarity=0.118 Sum_probs=79.4
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHhCCCC--c---cc-----------ccceeeEEEEEEEEECCcEEEEEEEeCCCcc
Q 032487 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFI--E---FQ-----------ESTIGAAFFSQTLAVNDATVKFEIWDTAGQE 70 (139)
Q Consensus 7 ~~~~~ki~i~G~~~~GKssli~~l~~~~~~--~---~~-----------~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~ 70 (139)
..+..+|+|+|++++|||||+++|+...-. . .. ...-+.+.......+.....++.++||||+.
T Consensus 7 ~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~ 86 (693)
T PRK00007 7 LERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHV 86 (693)
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcH
Confidence 345679999999999999999999742110 0 00 0112223333333333334789999999987
Q ss_pred cccccchhhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCC
Q 032487 71 RYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDA 130 (139)
Q Consensus 71 ~~~~~~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~ 130 (139)
++.......+..+|++++|+|+...-.... +..+..+.. .+.|.+++.||+|+.++
T Consensus 87 ~f~~ev~~al~~~D~~vlVvda~~g~~~qt-~~~~~~~~~---~~~p~iv~vNK~D~~~~ 142 (693)
T PRK00007 87 DFTIEVERSLRVLDGAVAVFDAVGGVEPQS-ETVWRQADK---YKVPRIAFVNKMDRTGA 142 (693)
T ss_pred HHHHHHHHHHHHcCEEEEEEECCCCcchhh-HHHHHHHHH---cCCCEEEEEECCCCCCC
Confidence 766555667888999999999887644333 233334443 35788999999998754
No 252
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.50 E-value=4.8e-13 Score=86.91 Aligned_cols=115 Identities=19% Similarity=0.303 Sum_probs=78.3
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCc----------ccccccch
Q 032487 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQ----------ERYHSLAP 77 (139)
Q Consensus 8 ~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~----------~~~~~~~~ 77 (139)
....-|+++|.+|+|||||||.|++++--.-...+.|.+.....+.+++. +.+.|.||- +.+.....
T Consensus 22 ~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~~~i~ 98 (200)
T COG0218 22 DDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWKKLIE 98 (200)
T ss_pred CCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHHHHHH
Confidence 34568999999999999999999996633234566677666776766653 789999994 23333333
Q ss_pred hhhcC---CCEEEEEEECCCHHH-HHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCC
Q 032487 78 MYYRG---AAAAIIVYDITNQAS-FERAKKWVQELQAQGNPNMVMALAGNKADLLDA 130 (139)
Q Consensus 78 ~~~~~---~~~~i~v~~~~~~~s-~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~ 130 (139)
.+++. -.++++++|+..+-. .+. ++++-+. ..++|+++++||+|-...
T Consensus 99 ~YL~~R~~L~~vvlliD~r~~~~~~D~--em~~~l~---~~~i~~~vv~tK~DKi~~ 150 (200)
T COG0218 99 EYLEKRANLKGVVLLIDARHPPKDLDR--EMIEFLL---ELGIPVIVVLTKADKLKK 150 (200)
T ss_pred HHHhhchhheEEEEEEECCCCCcHHHH--HHHHHHH---HcCCCeEEEEEccccCCh
Confidence 44443 467888889876422 222 3333333 347899999999997654
No 253
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.50 E-value=2.2e-13 Score=98.89 Aligned_cols=116 Identities=22% Similarity=0.240 Sum_probs=74.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCccc-------------c------------------cceeeEEEEEEEEECCcEE
Q 032487 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQ-------------E------------------STIGAAFFSQTLAVNDATV 59 (139)
Q Consensus 11 ~ki~i~G~~~~GKssli~~l~~~~~~~~~-------------~------------------~~~~~~~~~~~~~~~~~~~ 59 (139)
++++++|+.++|||||+++|+...-.-.. . ..-|.+.......+.....
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 58999999999999999998743211000 0 0011122223333333446
Q ss_pred EEEEEeCCCcccccccchhhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcC
Q 032487 60 KFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLD 129 (139)
Q Consensus 60 ~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~ 129 (139)
++.++||||+++|.......+..+|++++|+|+.....- ..++.+..+.... ..+++++.||+|+.+
T Consensus 81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~-qt~~~~~~~~~~~--~~~iivviNK~D~~~ 147 (406)
T TIGR02034 81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLE-QTRRHSYIASLLG--IRHVVLAVNKMDLVD 147 (406)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCcc-ccHHHHHHHHHcC--CCcEEEEEEeccccc
Confidence 899999999988865555567899999999998865321 2222333333322 246899999999865
No 254
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.49 E-value=7.3e-13 Score=89.04 Aligned_cols=113 Identities=21% Similarity=0.232 Sum_probs=72.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCccccc-----------------------ceeeEEEE---------------EEEE
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQES-----------------------TIGAAFFS---------------QTLA 53 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~~~~~~~~~-----------------------~~~~~~~~---------------~~~~ 53 (139)
|++++|+.++|||||+++|..+.+...... ..|.+..- ..+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 689999999999999999997654321100 01111000 0111
Q ss_pred ECCcEEEEEEEeCCCcccccccchhhhc--CCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCC
Q 032487 54 VNDATVKFEIWDTAGQERYHSLAPMYYR--GAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDA 130 (139)
Q Consensus 54 ~~~~~~~~~i~d~~g~~~~~~~~~~~~~--~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~ 130 (139)
.....+.++|+||++.+.......+. .+|++++|+|++.+.. ...+.++..+... ++|+++|.||+|+.++
T Consensus 81 --~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~-~~d~~~l~~l~~~---~ip~ivvvNK~D~~~~ 153 (224)
T cd04165 81 --KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGII-GMTKEHLGLALAL---NIPVFVVVTKIDLAPA 153 (224)
T ss_pred --eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCEEEEEECccccCH
Confidence 12357899999999887654443343 6899999999876533 2234455544443 5789999999998654
No 255
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.48 E-value=6.4e-13 Score=97.35 Aligned_cols=119 Identities=18% Similarity=0.153 Sum_probs=80.9
Q ss_pred CCcceeEEEEEcCCCCcHHHHHHHHHhCC--CCc---------------------------ccccceeeEEEEEEEEECC
Q 032487 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQ--FIE---------------------------FQESTIGAAFFSQTLAVND 56 (139)
Q Consensus 6 ~~~~~~ki~i~G~~~~GKssli~~l~~~~--~~~---------------------------~~~~~~~~~~~~~~~~~~~ 56 (139)
.++..++++++|+.++|||||+.+|+... ... .....-|.+.......+..
T Consensus 3 ~~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~ 82 (446)
T PTZ00141 3 KEKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFET 82 (446)
T ss_pred CCCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEcc
Confidence 45778999999999999999999988521 000 0011123333334444455
Q ss_pred cEEEEEEEeCCCcccccccchhhhcCCCEEEEEEECCCHHH---H---HHHHHHHHHHHHhCCCCCe-EEEEEeCCCC
Q 032487 57 ATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQAS---F---ERAKKWVQELQAQGNPNMV-MALAGNKADL 127 (139)
Q Consensus 57 ~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~~~~~~~s---~---~~~~~~~~~~~~~~~~~~p-~ivv~~k~D~ 127 (139)
....+.++|+||+.+|.......+..+|++++|+|+.+... + ...++.+..+... .+| +|++.||+|.
T Consensus 83 ~~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~---gi~~iiv~vNKmD~ 157 (446)
T PTZ00141 83 PKYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTL---GVKQMIVCINKMDD 157 (446)
T ss_pred CCeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHc---CCCeEEEEEEcccc
Confidence 56889999999999887766677889999999999986421 1 2334444444433 444 7899999994
No 256
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.48 E-value=1e-13 Score=93.75 Aligned_cols=120 Identities=19% Similarity=0.330 Sum_probs=79.2
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEE-EEECCcEEEEEEEeCCCccc-------ccccchh
Q 032487 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQT-LAVNDATVKFEIWDTAGQER-------YHSLAPM 78 (139)
Q Consensus 7 ~~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~d~~g~~~-------~~~~~~~ 78 (139)
...+++++++|..|+||||++|+|++++..+...-..+.+..... ..+++ -.+.+||+||.++ ++.....
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~--~~l~lwDtPG~gdg~~~D~~~r~~~~d 113 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDG--ENLVLWDTPGLGDGKDKDAEHRQLYRD 113 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccc--cceEEecCCCcccchhhhHHHHHHHHH
Confidence 456899999999999999999999976654432222222221111 12233 4589999999764 4455566
Q ss_pred hhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCC
Q 032487 79 YYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDA 130 (139)
Q Consensus 79 ~~~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~ 130 (139)
.+...|.++++.++.|+.=-... ++++.+.... -+.+++++.|.+|....
T Consensus 114 ~l~~~DLvL~l~~~~draL~~d~-~f~~dVi~~~-~~~~~i~~VtQ~D~a~p 163 (296)
T COG3596 114 YLPKLDLVLWLIKADDRALGTDE-DFLRDVIILG-LDKRVLFVVTQADRAEP 163 (296)
T ss_pred HhhhccEEEEeccCCCccccCCH-HHHHHHHHhc-cCceeEEEEehhhhhcc
Confidence 78889999999999987432222 3333333321 23789999999997554
No 257
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.48 E-value=3.7e-13 Score=102.51 Aligned_cols=121 Identities=23% Similarity=0.222 Sum_probs=76.5
Q ss_pred CCcceeEEEEEcCCCCcHHHHHHHHHhCCCCcc-------------c-c--c---------------ceeeEEEEEEEEE
Q 032487 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEF-------------Q-E--S---------------TIGAAFFSQTLAV 54 (139)
Q Consensus 6 ~~~~~~ki~i~G~~~~GKssli~~l~~~~~~~~-------------~-~--~---------------~~~~~~~~~~~~~ 54 (139)
..+..++|+++|++++|||||+++|+...-.-. . . . .-|.+.......+
T Consensus 20 ~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~ 99 (632)
T PRK05506 20 ERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYF 99 (632)
T ss_pred cCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEE
Confidence 345678999999999999999999996431110 0 0 0 0111122222233
Q ss_pred CCcEEEEEEEeCCCcccccccchhhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcC
Q 032487 55 NDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLD 129 (139)
Q Consensus 55 ~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~ 129 (139)
.....++.++||||++.+.......+..+|++++|+|+.+... ...++.+..+... ...+++++.||+|+.+
T Consensus 100 ~~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~-~~t~e~~~~~~~~--~~~~iivvvNK~D~~~ 171 (632)
T PRK05506 100 ATPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVL-TQTRRHSFIASLL--GIRHVVLAVNKMDLVD 171 (632)
T ss_pred ccCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCcc-ccCHHHHHHHHHh--CCCeEEEEEEeccccc
Confidence 3334678899999998775544445788999999999976432 1122233333333 1357899999999864
No 258
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.48 E-value=7.3e-13 Score=98.95 Aligned_cols=120 Identities=18% Similarity=0.139 Sum_probs=82.3
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccc------cchhhh--
Q 032487 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHS------LAPMYY-- 80 (139)
Q Consensus 9 ~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~------~~~~~~-- 80 (139)
+..+++++|+||+||||++|++++.......-+....+.......+++ .++++.|+||.-.... +.+.++
T Consensus 2 ~~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~--~~i~ivDLPG~YSL~~~S~DE~Var~~ll~ 79 (653)
T COG0370 2 KKLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKG--HEIEIVDLPGTYSLTAYSEDEKVARDFLLE 79 (653)
T ss_pred CcceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecC--ceEEEEeCCCcCCCCCCCchHHHHHHHHhc
Confidence 345699999999999999999999876655555555555555555555 5689999999643322 223333
Q ss_pred cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCCcCCCcc
Q 032487 81 RGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAE 136 (139)
Q Consensus 81 ~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~~~v~~~ 136 (139)
.++|+++-|+|+.+.+. --.+--++. .-+.|++++.|++|..+.+.+..+
T Consensus 80 ~~~D~ivnVvDAtnLeR---nLyltlQLl---E~g~p~ilaLNm~D~A~~~Gi~ID 129 (653)
T COG0370 80 GKPDLIVNVVDATNLER---NLYLTLQLL---ELGIPMILALNMIDEAKKRGIRID 129 (653)
T ss_pred CCCCEEEEEcccchHHH---HHHHHHHHH---HcCCCeEEEeccHhhHHhcCCccc
Confidence 35799999999987432 112222222 246789999999999877655443
No 259
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.46 E-value=3.5e-13 Score=97.20 Aligned_cols=122 Identities=19% Similarity=0.151 Sum_probs=82.5
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCccc-cccc--------chh
Q 032487 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER-YHSL--------APM 78 (139)
Q Consensus 8 ~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~-~~~~--------~~~ 78 (139)
+..++|+|+|.||+|||||+|.|.+.+..- ..+..|+++......++-.++.+.+.||+|..+ -... ...
T Consensus 266 q~gl~iaIvGrPNvGKSSLlNaL~~~drsI-VSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k 344 (531)
T KOG1191|consen 266 QSGLQIAIVGRPNVGKSSLLNALSREDRSI-VSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARK 344 (531)
T ss_pred hcCCeEEEEcCCCCCHHHHHHHHhcCCceE-eCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHHH
Confidence 446899999999999999999999877553 345566666665555544458899999999644 1111 123
Q ss_pred hhcCCCEEEEEEECCCH--HHHHHHHHHHHHHHHhC------CCCCeEEEEEeCCCCcCC
Q 032487 79 YYRGAAAAIIVYDITNQ--ASFERAKKWVQELQAQG------NPNMVMALAGNKADLLDA 130 (139)
Q Consensus 79 ~~~~~~~~i~v~~~~~~--~s~~~~~~~~~~~~~~~------~~~~p~ivv~~k~D~~~~ 130 (139)
.+..+|++++|+|+... .+-..+.+.+....... ....|++++.||.|+...
T Consensus 345 ~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~ 404 (531)
T KOG1191|consen 345 RIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSK 404 (531)
T ss_pred HHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCc
Confidence 46789999999999442 22222333333332211 135789999999998765
No 260
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.43 E-value=1.3e-12 Score=102.14 Aligned_cols=119 Identities=18% Similarity=0.173 Sum_probs=80.0
Q ss_pred CCcceeEEEEEcCCCCcHHHHHHHHHhCCCC--c--------------ccccceeeEEEEEEEEE--------------C
Q 032487 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFI--E--------------FQESTIGAAFFSQTLAV--------------N 55 (139)
Q Consensus 6 ~~~~~~ki~i~G~~~~GKssli~~l~~~~~~--~--------------~~~~~~~~~~~~~~~~~--------------~ 55 (139)
......+|+|+|+.++|||||+++|+...-. . +....+........+.+ +
T Consensus 15 ~~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~ 94 (843)
T PLN00116 15 KKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERD 94 (843)
T ss_pred CccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccC
Confidence 3456779999999999999999999854311 0 00001111111111111 1
Q ss_pred CcEEEEEEEeCCCcccccccchhhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCc
Q 032487 56 DATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLL 128 (139)
Q Consensus 56 ~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~ 128 (139)
+..+.+.++||||+.+|.......++.+|++++|+|+.++........| +.+. ..++|++++.||+|..
T Consensus 95 ~~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~-~~~~---~~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 95 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQAL---GERIRPVLTVNKMDRC 163 (843)
T ss_pred CCceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHH-HHHH---HCCCCEEEEEECCccc
Confidence 2357889999999998887777788999999999999886544333333 3333 3468999999999986
No 261
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=99.41 E-value=2.1e-12 Score=90.99 Aligned_cols=73 Identities=19% Similarity=0.281 Sum_probs=56.9
Q ss_pred EEEEEEEeCCCcccccccchhhhcCCCEEEEEEECCCH----------HHHHHHHHHHHHHHHhC-CCCCeEEEEEeCCC
Q 032487 58 TVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQ----------ASFERAKKWVQELQAQG-NPNMVMALAGNKAD 126 (139)
Q Consensus 58 ~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~~~~~~----------~s~~~~~~~~~~~~~~~-~~~~p~ivv~~k~D 126 (139)
...+.+||++|+...+..|..++.+++++++|+|.++- ..+......+..+.+.. -.+.|+++++||.|
T Consensus 160 ~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~D 239 (317)
T cd00066 160 NLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKKD 239 (317)
T ss_pred ceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccChH
Confidence 47799999999999999999999999999999999873 23444444444444432 26789999999999
Q ss_pred CcCC
Q 032487 127 LLDA 130 (139)
Q Consensus 127 ~~~~ 130 (139)
+..+
T Consensus 240 ~f~~ 243 (317)
T cd00066 240 LFEE 243 (317)
T ss_pred HHHH
Confidence 7654
No 262
>PRK12740 elongation factor G; Reviewed
Probab=99.41 E-value=3.3e-12 Score=97.94 Aligned_cols=109 Identities=19% Similarity=0.164 Sum_probs=73.6
Q ss_pred EcCCCCcHHHHHHHHHhCCCCc------------------ccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccch
Q 032487 16 LGDVGAGKSSLVLRFVKGQFIE------------------FQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAP 77 (139)
Q Consensus 16 ~G~~~~GKssli~~l~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~ 77 (139)
+|++++|||||+++|+...-.. +..+.+........+..+ .+.+.+|||||+..+...+.
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~--~~~i~liDtPG~~~~~~~~~ 78 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWK--GHKINLIDTPGHVDFTGEVE 78 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEEC--CEEEEEEECCCcHHHHHHHH
Confidence 5999999999999996532110 001112222222333333 48899999999988777677
Q ss_pred hhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCC
Q 032487 78 MYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDA 130 (139)
Q Consensus 78 ~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~ 130 (139)
..+..+|++++++|+.+.........| ..+.. .+.|+++|+||+|+...
T Consensus 79 ~~l~~aD~vllvvd~~~~~~~~~~~~~-~~~~~---~~~p~iiv~NK~D~~~~ 127 (668)
T PRK12740 79 RALRVLDGAVVVVCAVGGVEPQTETVW-RQAEK---YGVPRIIFVNKMDRAGA 127 (668)
T ss_pred HHHHHhCeEEEEEeCCCCcCHHHHHHH-HHHHH---cCCCEEEEEECCCCCCC
Confidence 788999999999999886554433323 33332 36899999999998754
No 263
>PTZ00416 elongation factor 2; Provisional
Probab=99.39 E-value=2.3e-12 Score=100.61 Aligned_cols=118 Identities=19% Similarity=0.177 Sum_probs=78.0
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHhCCCCcc--c------------ccceeeEEEE--EEEEEC--------CcEEEEE
Q 032487 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEF--Q------------ESTIGAAFFS--QTLAVN--------DATVKFE 62 (139)
Q Consensus 7 ~~~~~ki~i~G~~~~GKssli~~l~~~~~~~~--~------------~~~~~~~~~~--~~~~~~--------~~~~~~~ 62 (139)
.....+|+++|+.++|||||+++|+...-... . ..--+.+... ..+.+. +....+.
T Consensus 16 ~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~ 95 (836)
T PTZ00416 16 PDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLIN 95 (836)
T ss_pred ccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEE
Confidence 34556999999999999999999986321100 0 0000111111 112222 2257799
Q ss_pred EEeCCCcccccccchhhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCc
Q 032487 63 IWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLL 128 (139)
Q Consensus 63 i~d~~g~~~~~~~~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~ 128 (139)
++||||+.++.......+..+|++++|+|+.++-.... +..+..+.. .++|++++.||+|+.
T Consensus 96 liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t-~~~~~~~~~---~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 96 LIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQT-ETVLRQALQ---ERIRPVLFINKVDRA 157 (836)
T ss_pred EEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccH-HHHHHHHHH---cCCCEEEEEEChhhh
Confidence 99999998887766777899999999999988644332 233344433 357999999999986
No 264
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.38 E-value=5.4e-12 Score=92.06 Aligned_cols=118 Identities=16% Similarity=0.188 Sum_probs=87.2
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECC-cEEEEEEEeCCCcccccccchhhhcCCCEEE
Q 032487 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVND-ATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (139)
Q Consensus 9 ~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 87 (139)
+..=++++|+-..|||||+..+..........-.+..+.....+..+. ..-.+.|.||||++.|..++..-..-+|+++
T Consensus 4 R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaI 83 (509)
T COG0532 4 RPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAI 83 (509)
T ss_pred CCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEE
Confidence 445589999999999999999998877654444444444445554431 2246899999999999999888778899999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCC
Q 032487 88 IVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDA 130 (139)
Q Consensus 88 ~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~ 130 (139)
+|++++|.-- .+..+.+......+.|+++..||+|.++.
T Consensus 84 LVVa~dDGv~----pQTiEAI~hak~a~vP~iVAiNKiDk~~~ 122 (509)
T COG0532 84 LVVAADDGVM----PQTIEAINHAKAAGVPIVVAINKIDKPEA 122 (509)
T ss_pred EEEEccCCcc----hhHHHHHHHHHHCCCCEEEEEecccCCCC
Confidence 9999998421 22233333333468999999999998854
No 265
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.38 E-value=1.5e-11 Score=90.48 Aligned_cols=124 Identities=17% Similarity=0.198 Sum_probs=92.2
Q ss_pred CCCcceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCC
Q 032487 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAA 84 (139)
Q Consensus 5 ~~~~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~ 84 (139)
+....-+++.++|+.++|||.++++++++.+......+....+....+...+....+.+-|.+-. ......... ..||
T Consensus 420 ~~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cD 497 (625)
T KOG1707|consen 420 QTDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACD 497 (625)
T ss_pred cccceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceee
Confidence 34566789999999999999999999998877655566666666666666666667777887754 222222222 7899
Q ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCCcC
Q 032487 85 AAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARK 132 (139)
Q Consensus 85 ~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~~~ 132 (139)
++.++||.+++.+|+......+.-.. ....||++|++|+|+.+..|
T Consensus 498 v~~~~YDsS~p~sf~~~a~v~~~~~~--~~~~Pc~~va~K~dlDe~~Q 543 (625)
T KOG1707|consen 498 VACLVYDSSNPRSFEYLAEVYNKYFD--LYKIPCLMVATKADLDEVPQ 543 (625)
T ss_pred eEEEecccCCchHHHHHHHHHHHhhh--ccCCceEEEeeccccchhhh
Confidence 99999999999999876655443222 26899999999999977653
No 266
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.37 E-value=5e-12 Score=84.43 Aligned_cols=117 Identities=19% Similarity=0.188 Sum_probs=66.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCccccc--ceeeEEEEEEEEECCcEEEEEEEeCCCcccccc--------cc---h
Q 032487 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQES--TIGAAFFSQTLAVNDATVKFEIWDTAGQERYHS--------LA---P 77 (139)
Q Consensus 11 ~ki~i~G~~~~GKssli~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~--------~~---~ 77 (139)
++|+++|..|+||||++|.+++......... .............++ ..+.++||||..+... +. .
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g--~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~ 78 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDG--RQVTVIDTPGLFDSDGSDEEIIREIKRCLS 78 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETT--EEEEEEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecc--eEEEEEeCCCCCCCcccHHHHHHHHHHHHH
Confidence 5899999999999999999998876543321 112222333334555 7789999999532211 11 1
Q ss_pred hhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEeCCCCcCCc
Q 032487 78 MYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGN--PNMVMALAGNKADLLDAR 131 (139)
Q Consensus 78 ~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~~k~D~~~~~ 131 (139)
....+.+++++|+..+.. +- .-+..++.+..... .-..++||.|..|.....
T Consensus 79 ~~~~g~ha~llVi~~~r~-t~-~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~ 132 (212)
T PF04548_consen 79 LCSPGPHAFLLVIPLGRF-TE-EDREVLELLQEIFGEEIWKHTIVVFTHADELEDD 132 (212)
T ss_dssp HTTT-ESEEEEEEETTB--SH-HHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGTTT
T ss_pred hccCCCeEEEEEEecCcc-hH-HHHHHHHHHHHHccHHHHhHhhHHhhhccccccc
Confidence 124568999999998832 21 12233333333212 123589999999876654
No 267
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=99.36 E-value=1.6e-11 Score=87.33 Aligned_cols=72 Identities=17% Similarity=0.237 Sum_probs=56.6
Q ss_pred EEEEEEeCCCcccccccchhhhcCCCEEEEEEECCCH----------HHHHHHHHHHHHHHHhC-CCCCeEEEEEeCCCC
Q 032487 59 VKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQ----------ASFERAKKWVQELQAQG-NPNMVMALAGNKADL 127 (139)
Q Consensus 59 ~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~~~~~~----------~s~~~~~~~~~~~~~~~-~~~~p~ivv~~k~D~ 127 (139)
..+.+||.+|+...+..|..++.+++++++|+|+++- ..+......+..+.+.. -.+.|+++++||.|+
T Consensus 184 ~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~D~ 263 (342)
T smart00275 184 LFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKIDL 263 (342)
T ss_pred eEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecHHh
Confidence 6789999999999999999999999999999999863 23444444455544432 367899999999998
Q ss_pred cCC
Q 032487 128 LDA 130 (139)
Q Consensus 128 ~~~ 130 (139)
..+
T Consensus 264 ~~~ 266 (342)
T smart00275 264 FEE 266 (342)
T ss_pred HHH
Confidence 653
No 268
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.36 E-value=9.3e-12 Score=88.46 Aligned_cols=124 Identities=23% Similarity=0.265 Sum_probs=85.5
Q ss_pred CCcceeEEEEEcCCCCcHHHHHHHHHhCC--CCc---------------------------ccccceeeEEEEEEEEECC
Q 032487 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQ--FIE---------------------------FQESTIGAAFFSQTLAVND 56 (139)
Q Consensus 6 ~~~~~~ki~i~G~~~~GKssli~~l~~~~--~~~---------------------------~~~~~~~~~~~~~~~~~~~ 56 (139)
+.+..++++++|+..+||||++-+|+..- +.. ...+--|.+.......+..
T Consensus 3 ~~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet 82 (428)
T COG5256 3 SEKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFET 82 (428)
T ss_pred CCCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeec
Confidence 45778999999999999999999888532 111 0111234455555555655
Q ss_pred cEEEEEEEeCCCcccccccchhhhcCCCEEEEEEECCCHH---HHH---HHHHHHHHHHHhCCCCCeEEEEEeCCCCcCC
Q 032487 57 ATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQA---SFE---RAKKWVQELQAQGNPNMVMALAGNKADLLDA 130 (139)
Q Consensus 57 ~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~~~~~~~---s~~---~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~ 130 (139)
..+.|+|+|+||+.+|-.-...-..++|++++|+|+++.+ .|. +.++.+-..+..+ -..+|++.||.|+.+.
T Consensus 83 ~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlG--i~~lIVavNKMD~v~w 160 (428)
T COG5256 83 DKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLG--IKQLIVAVNKMDLVSW 160 (428)
T ss_pred CCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcC--CceEEEEEEccccccc
Confidence 5688999999998877665555678899999999999863 121 2334444444432 3458999999999874
Q ss_pred c
Q 032487 131 R 131 (139)
Q Consensus 131 ~ 131 (139)
+
T Consensus 161 d 161 (428)
T COG5256 161 D 161 (428)
T ss_pred C
Confidence 3
No 269
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.36 E-value=5.7e-12 Score=87.60 Aligned_cols=117 Identities=20% Similarity=0.074 Sum_probs=80.6
Q ss_pred EEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccc----c---chhhhcCCCE
Q 032487 13 LVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHS----L---APMYYRGAAA 85 (139)
Q Consensus 13 i~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~----~---~~~~~~~~~~ 85 (139)
+-++|.|++|||||++.+...+..-..+++.........+.. ...-.|.+-|.||.-+-.. + .-.+++.+.+
T Consensus 162 VGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~-~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~v 240 (369)
T COG0536 162 VGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRV-DGGESFVVADIPGLIEGASEGVGLGLRFLRHIERTRV 240 (369)
T ss_pred cccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEe-cCCCcEEEecCcccccccccCCCccHHHHHHHHhhhe
Confidence 568999999999999999998766544454444444444444 2234589999998532111 1 1234678999
Q ss_pred EEEEEECCCHH---HHHHHHHHHHHHHHhCC--CCCeEEEEEeCCCCcCC
Q 032487 86 AIIVYDITNQA---SFERAKKWVQELQAQGN--PNMVMALAGNKADLLDA 130 (139)
Q Consensus 86 ~i~v~~~~~~~---s~~~~~~~~~~~~~~~~--~~~p~ivv~~k~D~~~~ 130 (139)
++.|+|++..+ ..+..+....++..+.. ...|.++|+||+|+...
T Consensus 241 L~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~ 290 (369)
T COG0536 241 LLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLD 290 (369)
T ss_pred eEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcC
Confidence 99999998644 35556666666766532 57899999999995443
No 270
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.36 E-value=1.3e-12 Score=94.56 Aligned_cols=125 Identities=18% Similarity=0.174 Sum_probs=88.5
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCccc-----cccc------
Q 032487 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER-----YHSL------ 75 (139)
Q Consensus 7 ~~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~-----~~~~------ 75 (139)
.+....++++|.|++|||||+|.+..+.....++++.....++..+.++. .+|++.||||.-. .+.+
T Consensus 165 Dp~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~dykY--lrwQViDTPGILD~plEdrN~IEmqsIT 242 (620)
T KOG1490|consen 165 DPNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLDYKY--LRWQVIDTPGILDRPEEDRNIIEMQIIT 242 (620)
T ss_pred CCCcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhhhhhe--eeeeecCCccccCcchhhhhHHHHHHHH
Confidence 45667899999999999999999999887766666655555555554444 7899999999521 1111
Q ss_pred chhhhcCCCEEEEEEECCC--HHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCCcCCCcc
Q 032487 76 APMYYRGAAAAIIVYDITN--QASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAE 136 (139)
Q Consensus 76 ~~~~~~~~~~~i~v~~~~~--~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~~~v~~~ 136 (139)
.-.+++ .+++++.|++. +.|...--.++..|... -.+.|.|+|.||+|+.....++++
T Consensus 243 ALAHLr--aaVLYfmDLSe~CGySva~QvkLfhsIKpL-FaNK~~IlvlNK~D~m~~edL~~~ 302 (620)
T KOG1490|consen 243 ALAHLR--SAVLYFMDLSEMCGYSVAAQVKLYHSIKPL-FANKVTILVLNKIDAMRPEDLDQK 302 (620)
T ss_pred HHHHhh--hhheeeeechhhhCCCHHHHHHHHHHhHHH-hcCCceEEEeecccccCccccCHH
Confidence 011233 35666666665 46666666777777776 368899999999999877666654
No 271
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.34 E-value=2.8e-12 Score=79.81 Aligned_cols=96 Identities=21% Similarity=0.239 Sum_probs=63.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcc----cccccchhhhcCCCEEE
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQE----RYHSLAPMYYRGAAAAI 87 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~----~~~~~~~~~~~~~~~~i 87 (139)
||+++|+.|||||||+++|.+.+... ..|.. +.+.+ .++||||.- .+..-......++|.++
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~~~--~KTq~-------i~~~~-----~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ 68 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEIRY--KKTQA-------IEYYD-----NTIDTPGEYIENPRFYHALIVTAQDADVVL 68 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCCCc--Cccce-------eEecc-----cEEECChhheeCHHHHHHHHHHHhhCCEEE
Confidence 79999999999999999999866432 22221 22222 358999941 12221223356899999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCc
Q 032487 88 IVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLL 128 (139)
Q Consensus 88 ~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~ 128 (139)
++.|++++.+.-. ..+... -+.|+|=|.||+|+.
T Consensus 69 ll~dat~~~~~~p-----P~fa~~--f~~pvIGVITK~Dl~ 102 (143)
T PF10662_consen 69 LLQDATEPRSVFP-----PGFASM--FNKPVIGVITKIDLP 102 (143)
T ss_pred EEecCCCCCccCC-----chhhcc--cCCCEEEEEECccCc
Confidence 9999998654211 111111 257899999999998
No 272
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.32 E-value=1.4e-11 Score=95.27 Aligned_cols=118 Identities=16% Similarity=0.156 Sum_probs=76.8
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHhCCCCcccc--------------cceeeEEEE----EEEEECCcEEEEEEEeCCCc
Q 032487 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQE--------------STIGAAFFS----QTLAVNDATVKFEIWDTAGQ 69 (139)
Q Consensus 8 ~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~--------------~~~~~~~~~----~~~~~~~~~~~~~i~d~~g~ 69 (139)
.+..+|+++|+.++|||||+++|+...-..... ..-+.+..+ ..+..++....+.++||||+
T Consensus 18 ~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~ 97 (731)
T PRK07560 18 EQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGH 97 (731)
T ss_pred hcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCc
Confidence 456689999999999999999998532110000 000111111 11223444688999999999
Q ss_pred ccccccchhhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcC
Q 032487 70 ERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLD 129 (139)
Q Consensus 70 ~~~~~~~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~ 129 (139)
.+|.......+..+|++++|+|+...........| ..+... +.|.+++.||+|+..
T Consensus 98 ~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~-~~~~~~---~~~~iv~iNK~D~~~ 153 (731)
T PRK07560 98 VDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVL-RQALRE---RVKPVLFINKVDRLI 153 (731)
T ss_pred cChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHH-HHHHHc---CCCeEEEEECchhhc
Confidence 88877667788999999999998875433222223 332322 457799999999763
No 273
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.32 E-value=1.9e-12 Score=92.05 Aligned_cols=113 Identities=15% Similarity=0.150 Sum_probs=57.8
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHhCCCCccccccee---eEEEEEEEEECCcEEEEEEEeCCCcccccccchh-----h
Q 032487 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIG---AAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPM-----Y 79 (139)
Q Consensus 8 ~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~-----~ 79 (139)
..+++|+|+|.+|+|||||||.|.+-..........| ++.....+.... .-.+.+||.||.......... .
T Consensus 33 ~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~-~pnv~lWDlPG~gt~~f~~~~Yl~~~~ 111 (376)
T PF05049_consen 33 NAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPK-FPNVTLWDLPGIGTPNFPPEEYLKEVK 111 (376)
T ss_dssp H--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS--TTEEEEEE--GGGSS--HHHHHHHTT
T ss_pred cCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCC-CCCCeEEeCCCCCCCCCCHHHHHHHcc
Confidence 4578999999999999999999986433222111111 111122222221 124899999997543322222 3
Q ss_pred hcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCC
Q 032487 80 YRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADL 127 (139)
Q Consensus 80 ~~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~ 127 (139)
+...|.+|++.+..-... -..+...+.. .+.|+++|.||+|.
T Consensus 112 ~~~yD~fiii~s~rf~~n---dv~La~~i~~---~gK~fyfVRTKvD~ 153 (376)
T PF05049_consen 112 FYRYDFFIIISSERFTEN---DVQLAKEIQR---MGKKFYFVRTKVDS 153 (376)
T ss_dssp GGG-SEEEEEESSS--HH---HHHHHHHHHH---TT-EEEEEE--HHH
T ss_pred ccccCEEEEEeCCCCchh---hHHHHHHHHH---cCCcEEEEEecccc
Confidence 667898888776433222 1123333443 36789999999995
No 274
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.31 E-value=1.9e-11 Score=89.53 Aligned_cols=118 Identities=15% Similarity=0.183 Sum_probs=88.2
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEEE
Q 032487 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (139)
Q Consensus 8 ~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 87 (139)
+++.=+.|+|+-.-|||||+..|..........-.+..+.....++... +-.++|.||||+..|..++..-.+-.|+++
T Consensus 151 ~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~-G~~iTFLDTPGHaAF~aMRaRGA~vtDIvV 229 (683)
T KOG1145|consen 151 PRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPS-GKSITFLDTPGHAAFSAMRARGANVTDIVV 229 (683)
T ss_pred CCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecCC-CCEEEEecCCcHHHHHHHHhccCccccEEE
Confidence 4566789999999999999999998776543333333333344444442 267899999999999999888888899999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCC
Q 032487 88 IVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDA 130 (139)
Q Consensus 88 ~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~ 130 (139)
+|+.++|.. +...++.|......++|+++..||||.+.+
T Consensus 230 LVVAadDGV----mpQT~EaIkhAk~A~VpiVvAinKiDkp~a 268 (683)
T KOG1145|consen 230 LVVAADDGV----MPQTLEAIKHAKSANVPIVVAINKIDKPGA 268 (683)
T ss_pred EEEEccCCc----cHhHHHHHHHHHhcCCCEEEEEeccCCCCC
Confidence 999999842 233344445444578999999999997754
No 275
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.28 E-value=4.3e-11 Score=84.17 Aligned_cols=81 Identities=23% Similarity=0.273 Sum_probs=54.1
Q ss_pred EEEEcCCCCcHHHHHHHHHhCCCCc------ccccceeeEEEEEE---------------EEECC-cEEEEEEEeCCCc-
Q 032487 13 LVLLGDVGAGKSSLVLRFVKGQFIE------FQESTIGAAFFSQT---------------LAVND-ATVKFEIWDTAGQ- 69 (139)
Q Consensus 13 i~i~G~~~~GKssli~~l~~~~~~~------~~~~~~~~~~~~~~---------------~~~~~-~~~~~~i~d~~g~- 69 (139)
|.++|.+++|||||+|+|.+..... +..++.|..+.... ...++ ....+++||+||.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 5789999999999999999876432 22334443332211 01122 3367999999997
Q ss_pred ---ccccccchh---hhcCCCEEEEEEECC
Q 032487 70 ---ERYHSLAPM---YYRGAAAAIIVYDIT 93 (139)
Q Consensus 70 ---~~~~~~~~~---~~~~~~~~i~v~~~~ 93 (139)
+++..+-.. .++++|++++|+|+.
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~ 110 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDAS 110 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 333333233 488999999999986
No 276
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.28 E-value=8e-11 Score=81.60 Aligned_cols=118 Identities=17% Similarity=0.214 Sum_probs=67.1
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHhCCCCccc----------ccceeeEEEEEEEEECCcEEEEEEEeCCCccc-------
Q 032487 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQ----------ESTIGAAFFSQTLAVNDATVKFEIWDTAGQER------- 71 (139)
Q Consensus 9 ~~~ki~i~G~~~~GKssli~~l~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~------- 71 (139)
..++|+++|..|+|||||+|.|++....... ..+.........+..++..+.+.++||||...
T Consensus 3 ~~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~ 82 (281)
T PF00735_consen 3 FNFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDC 82 (281)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhh
Confidence 4689999999999999999999986544321 12222333333444567788999999998321
Q ss_pred -----------ccc-------cchhhh--cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCC
Q 032487 72 -----------YHS-------LAPMYY--RGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDA 130 (139)
Q Consensus 72 -----------~~~-------~~~~~~--~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~ 130 (139)
+.. ..+..+ ...|+|++.++.+...- .. .=+..|+.. ...+++|.|..|+|....
T Consensus 83 ~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L-~~--~Di~~mk~L-s~~vNvIPvIaKaD~lt~ 157 (281)
T PF00735_consen 83 WEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGL-KP--LDIEFMKRL-SKRVNVIPVIAKADTLTP 157 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS--H--HHHHHHHHH-TTTSEEEEEESTGGGS-H
T ss_pred hHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccc-hH--HHHHHHHHh-cccccEEeEEecccccCH
Confidence 100 000001 23678999988654211 11 111223333 345789999999998654
No 277
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.26 E-value=6.1e-11 Score=82.07 Aligned_cols=87 Identities=18% Similarity=0.143 Sum_probs=67.6
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCccccc-------ccchhhhc
Q 032487 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYH-------SLAPMYYR 81 (139)
Q Consensus 9 ~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~-------~~~~~~~~ 81 (139)
=..+++++|.|++|||||++.|.+.+.....+++...+..+..+.+++ .++|+.|+||.-... ...-+..+
T Consensus 62 Gda~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~g--a~IQild~Pgii~gas~g~grG~~vlsv~R 139 (365)
T COG1163 62 GDATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKG--AQIQLLDLPGIIEGASSGRGRGRQVLSVAR 139 (365)
T ss_pred CCeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecC--ceEEEEcCcccccCcccCCCCcceeeeeec
Confidence 356899999999999999999999877666666666666777788877 789999999852211 11234578
Q ss_pred CCCEEEEEEECCCHHH
Q 032487 82 GAAAAIIVYDITNQAS 97 (139)
Q Consensus 82 ~~~~~i~v~~~~~~~s 97 (139)
+||.+++|+|+.....
T Consensus 140 ~ADlIiiVld~~~~~~ 155 (365)
T COG1163 140 NADLIIIVLDVFEDPH 155 (365)
T ss_pred cCCEEEEEEecCCChh
Confidence 8999999999987655
No 278
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.25 E-value=8.4e-11 Score=75.54 Aligned_cols=63 Identities=21% Similarity=0.198 Sum_probs=43.3
Q ss_pred EEEEEeCCCccc----ccccchhhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCC
Q 032487 60 KFEIWDTAGQER----YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKA 125 (139)
Q Consensus 60 ~~~i~d~~g~~~----~~~~~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~ 125 (139)
.+.++|+||... .......++..+|++++|.+++...+-.....+....... ...+++|.||.
T Consensus 102 ~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~---~~~~i~V~nk~ 168 (168)
T PF00350_consen 102 NLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPD---KSRTIFVLNKA 168 (168)
T ss_dssp SEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTT---CSSEEEEEE-G
T ss_pred ceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCC---CCeEEEEEcCC
Confidence 578999999743 2244566789999999999999865544455555554443 23389999984
No 279
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.25 E-value=2e-12 Score=87.63 Aligned_cols=123 Identities=15% Similarity=0.171 Sum_probs=69.9
Q ss_pred CCcceeEEEEEcCCCCcHHHHHHHHHhCCCCccccc-------------------------------------ceeeEEE
Q 032487 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQES-------------------------------------TIGAAFF 48 (139)
Q Consensus 6 ~~~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~-------------------------------------~~~~~~~ 48 (139)
..+++..|+++|..|+|||||+++|..+-......+ ..|+...
T Consensus 15 ~~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~Ts 94 (366)
T KOG1532|consen 15 AIQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTS 94 (366)
T ss_pred cccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhh
Confidence 456788899999999999999999886533221111 0000000
Q ss_pred E-----------EEEEECCcEEEEEEEeCCCccccc------ccchhhhc--CCCEEEEEEECCC---HHHHHHHHHHHH
Q 032487 49 S-----------QTLAVNDATVKFEIWDTAGQERYH------SLAPMYYR--GAAAAIIVYDITN---QASFERAKKWVQ 106 (139)
Q Consensus 49 ~-----------~~~~~~~~~~~~~i~d~~g~~~~~------~~~~~~~~--~~~~~i~v~~~~~---~~s~~~~~~~~~ 106 (139)
. ..+.-....+++.++|||||-... .+....+. ...++++++|... +.+| +.+++.
T Consensus 95 LNLF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tF--MSNMlY 172 (366)
T KOG1532|consen 95 LNLFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTF--MSNMLY 172 (366)
T ss_pred HHHHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhH--HHHHHH
Confidence 0 000001113568899999984321 12222233 2456666666543 4444 333333
Q ss_pred HHHHhCCCCCeEEEEEeCCCCcCC
Q 032487 107 ELQAQGNPNMVMALAGNKADLLDA 130 (139)
Q Consensus 107 ~~~~~~~~~~p~ivv~~k~D~~~~ 130 (139)
...-..+.++|+|++.||+|+.+.
T Consensus 173 AcSilyktklp~ivvfNK~Dv~d~ 196 (366)
T KOG1532|consen 173 ACSILYKTKLPFIVVFNKTDVSDS 196 (366)
T ss_pred HHHHHHhccCCeEEEEeccccccc
Confidence 333333578999999999999875
No 280
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.24 E-value=1.5e-10 Score=83.63 Aligned_cols=83 Identities=19% Similarity=0.140 Sum_probs=53.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEE---------------------EC-CcEEEEEEEeCCC
Q 032487 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLA---------------------VN-DATVKFEIWDTAG 68 (139)
Q Consensus 11 ~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~---------------------~~-~~~~~~~i~d~~g 68 (139)
++|.++|.|++|||||+|+|.+........+..+.+....... .+ .....+++||+||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 6899999999999999999998765432222222111111111 11 1236789999999
Q ss_pred cc----cccccchhh---hcCCCEEEEEEECC
Q 032487 69 QE----RYHSLAPMY---YRGAAAAIIVYDIT 93 (139)
Q Consensus 69 ~~----~~~~~~~~~---~~~~~~~i~v~~~~ 93 (139)
.. ....+-..+ ++++|++++|+|+.
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 53 222222233 78999999999996
No 281
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.23 E-value=4.9e-11 Score=78.03 Aligned_cols=116 Identities=20% Similarity=0.285 Sum_probs=78.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhc---CCCEEE
Q 032487 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYR---GAAAAI 87 (139)
Q Consensus 11 ~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~---~~~~~i 87 (139)
-.++++|+.+||||++.-+|..+.+..+.. ++. .....+..+. -..+++|.||+++.+.....++. .+.+++
T Consensus 39 ~~Vll~Gl~dSGKT~LF~qL~~gs~~~Tvt-Sie--pn~a~~r~gs--~~~~LVD~PGH~rlR~kl~e~~~~~~~akaiV 113 (238)
T KOG0090|consen 39 NAVLLVGLSDSGKTSLFTQLITGSHRGTVT-SIE--PNEATYRLGS--ENVTLVDLPGHSRLRRKLLEYLKHNYSAKAIV 113 (238)
T ss_pred CcEEEEecCCCCceeeeeehhcCCccCeee-eec--cceeeEeecC--cceEEEeCCCcHHHHHHHHHHccccccceeEE
Confidence 469999999999999999999886554322 221 2223333333 33799999999988876666665 688999
Q ss_pred EEEECCC-HHHHHHHHHHHHHHHHh---CCCCCeEEEEEeCCCCcCCc
Q 032487 88 IVYDITN-QASFERAKKWVQELQAQ---GNPNMVMALAGNKADLLDAR 131 (139)
Q Consensus 88 ~v~~~~~-~~s~~~~~~~~~~~~~~---~~~~~p~ivv~~k~D~~~~~ 131 (139)
+|+|... ..-...+.+++..+... .....|+++.-||.|+..++
T Consensus 114 FVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAk 161 (238)
T KOG0090|consen 114 FVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAK 161 (238)
T ss_pred EEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcC
Confidence 9998653 22233344444444332 24678999999999987653
No 282
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.23 E-value=8.1e-11 Score=86.42 Aligned_cols=123 Identities=13% Similarity=0.108 Sum_probs=77.8
Q ss_pred CCcceeEEEEEcCCCCcHHHHHHHHHhCCC---Cccccc----ceeeEEEE-----------EEEEECC-----------
Q 032487 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQF---IEFQES----TIGAAFFS-----------QTLAVND----------- 56 (139)
Q Consensus 6 ~~~~~~ki~i~G~~~~GKssli~~l~~~~~---~~~~~~----~~~~~~~~-----------~~~~~~~----------- 56 (139)
++...++|.++|+-..|||||+..|.+... ..+..+ ..|+...- .......
T Consensus 30 ~~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (460)
T PTZ00327 30 SRQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGC 109 (460)
T ss_pred cCCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccc
Confidence 456788999999999999999999996432 111111 11211100 0000000
Q ss_pred -----cEEEEEEEeCCCcccccccchhhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCC
Q 032487 57 -----ATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDA 130 (139)
Q Consensus 57 -----~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~ 130 (139)
...++.++|+||++.|.......+..+|++++|+|+.++..-.+.++.+..+.... -.+++++.||+|+.+.
T Consensus 110 ~~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lg--i~~iIVvlNKiDlv~~ 186 (460)
T PTZ00327 110 GHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMK--LKHIIILQNKIDLVKE 186 (460)
T ss_pred cccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcC--CCcEEEEEecccccCH
Confidence 02368999999998887665666788999999999987421122334444444332 2468999999998753
No 283
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.22 E-value=2.8e-11 Score=80.85 Aligned_cols=125 Identities=22% Similarity=0.326 Sum_probs=78.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCccccccc---chhhhcCCCEEE
Q 032487 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSL---APMYYRGAAAAI 87 (139)
Q Consensus 11 ~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~---~~~~~~~~~~~i 87 (139)
.+|+++|...|||||+-.-..+ +..+..+-....+.....-.+.+.-+.|++||.|||-.+..- ....++++.+++
T Consensus 28 p~ilLMG~rRsGKsSI~KVVFh-kMsPneTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALi 106 (347)
T KOG3887|consen 28 PRILLMGLRRSGKSSIQKVVFH-KMSPNETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGALI 106 (347)
T ss_pred ceEEEEeecccCcchhhheeee-ccCCCceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeEE
Confidence 4599999999999998554443 333322222221111111122333478999999999655432 245689999999
Q ss_pred EEEECCCH--HHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCC-cCCcCCCccc
Q 032487 88 IVYDITNQ--ASFERAKKWVQELQAQGNPNMVMALAGNKADL-LDARKVTAEA 137 (139)
Q Consensus 88 ~v~~~~~~--~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~-~~~~~v~~~e 137 (139)
+++|+++. +.+.++........+. .+++.+-++.+|.|. .++-.+++++
T Consensus 107 fvIDaQddy~eala~L~~~v~raykv-Np~in~EVfiHKvDGLsdd~kietqr 158 (347)
T KOG3887|consen 107 FVIDAQDDYMEALARLHMTVERAYKV-NPNINFEVFIHKVDGLSDDFKIETQR 158 (347)
T ss_pred EEEechHHHHHHHHHHHHHhhheeec-CCCceEEEEEEeccCCchhhhhhhHH
Confidence 99999874 3344444444444443 467889999999995 4455565554
No 284
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.21 E-value=2.4e-10 Score=86.08 Aligned_cols=119 Identities=15% Similarity=0.171 Sum_probs=72.7
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEE-EEEECCcEEEEEEEeCCCcccccc-------c---ch
Q 032487 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQ-TLAVNDATVKFEIWDTAGQERYHS-------L---AP 77 (139)
Q Consensus 9 ~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~d~~g~~~~~~-------~---~~ 77 (139)
..++|+++|.+|+||||++|+|++...........+++.... ....++ ..+.++||||...... + ..
T Consensus 117 fslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG--~~L~VIDTPGL~dt~~dq~~neeILk~Ik 194 (763)
T TIGR00993 117 FSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQG--VKIRVIDTPGLKSSASDQSKNEKILSSVK 194 (763)
T ss_pred cceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECC--ceEEEEECCCCCccccchHHHHHHHHHHH
Confidence 457899999999999999999998764432221122222111 122333 6799999999754321 1 11
Q ss_pred hhhc--CCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEeCCCCcC
Q 032487 78 MYYR--GAAAAIIVYDITNQASFERAKKWVQELQAQGNP--NMVMALAGNKADLLD 129 (139)
Q Consensus 78 ~~~~--~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~--~~p~ivv~~k~D~~~ 129 (139)
.++. .+|++++|..++.......-..+++.+...... -.-.|||.|+.|...
T Consensus 195 ~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lp 250 (763)
T TIGR00993 195 KFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAP 250 (763)
T ss_pred HHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCC
Confidence 1233 479999998876433222233556666554332 234899999999765
No 285
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.21 E-value=1.7e-10 Score=88.05 Aligned_cols=120 Identities=21% Similarity=0.194 Sum_probs=87.0
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHhCCCC-----ccc-----------ccceeeEEEEEEEEECCc-EEEEEEEeCCCc
Q 032487 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFI-----EFQ-----------ESTIGAAFFSQTLAVNDA-TVKFEIWDTAGQ 69 (139)
Q Consensus 7 ~~~~~ki~i~G~~~~GKssli~~l~~~~~~-----~~~-----------~~~~~~~~~~~~~~~~~~-~~~~~i~d~~g~ 69 (139)
.....+|.|+|+-.+||||+..+++...-. ... ..--|.+..+..++.-+. .+.++++||||+
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGH 86 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGH 86 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCc
Confidence 456778999999999999999998843211 000 111233444444444444 489999999999
Q ss_pred ccccccchhhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCC
Q 032487 70 ERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDA 130 (139)
Q Consensus 70 ~~~~~~~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~ 130 (139)
-+|..--...++-+|++++|+|+.+......-.-|.... .-++|.+++.||+|....
T Consensus 87 VDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~----~~~vp~i~fiNKmDR~~a 143 (697)
T COG0480 87 VDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQAD----KYGVPRILFVNKMDRLGA 143 (697)
T ss_pred cccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHh----hcCCCeEEEEECcccccc
Confidence 999988888899999999999999876655545553322 347899999999997654
No 286
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.20 E-value=4.3e-10 Score=75.76 Aligned_cols=111 Identities=15% Similarity=0.199 Sum_probs=68.2
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEE
Q 032487 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 86 (139)
Q Consensus 7 ~~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 86 (139)
......|+++|.+|+|||||++.+.+...........|. + .+ ......++.++|+||.- ... ......+|++
T Consensus 36 ~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-i---~i-~~~~~~~i~~vDtPg~~--~~~-l~~ak~aDvV 107 (225)
T cd01882 36 EPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-I---TV-VTGKKRRLTFIECPNDI--NAM-IDIAKVADLV 107 (225)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc-E---EE-EecCCceEEEEeCCchH--HHH-HHHHHhcCEE
Confidence 355678999999999999999999865221111111221 1 11 11234678899999853 222 2345789999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEeCCCCcC
Q 032487 87 IIVYDITNQASFERAKKWVQELQAQGNPNMV-MALAGNKADLLD 129 (139)
Q Consensus 87 i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~~k~D~~~ 129 (139)
++++|+....... ...++..+... +.| +++|.||.|+.+
T Consensus 108 llviDa~~~~~~~-~~~i~~~l~~~---g~p~vi~VvnK~D~~~ 147 (225)
T cd01882 108 LLLIDASFGFEME-TFEFLNILQVH---GFPRVMGVLTHLDLFK 147 (225)
T ss_pred EEEEecCcCCCHH-HHHHHHHHHHc---CCCeEEEEEeccccCC
Confidence 9999987643321 22333434332 456 455999999864
No 287
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.19 E-value=3.2e-10 Score=83.20 Aligned_cols=119 Identities=18% Similarity=0.227 Sum_probs=85.9
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHhCCCC--c-----------ccccceeeEEEEEEEEE---CCcEEEEEEEeCCCcccc
Q 032487 9 INAKLVLLGDVGAGKSSLVLRFVKGQFI--E-----------FQESTIGAAFFSQTLAV---NDATVKFEIWDTAGQERY 72 (139)
Q Consensus 9 ~~~ki~i~G~~~~GKssli~~l~~~~~~--~-----------~~~~~~~~~~~~~~~~~---~~~~~~~~i~d~~g~~~~ 72 (139)
+.-++.|+.+-.-|||||..+|+...-. . +..+--|++....+... ++..+.+.++||||+.+|
T Consensus 59 ~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvDF 138 (650)
T KOG0462|consen 59 NIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVDF 138 (650)
T ss_pred hccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCcccc
Confidence 3457999999999999999998853221 0 01122344444443322 356699999999999999
Q ss_pred cccchhhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCCc
Q 032487 73 HSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131 (139)
Q Consensus 73 ~~~~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~~ 131 (139)
..--...+..|+++++++|+...-.-..+..+...+. .++.+|.|.||+|++.++
T Consensus 139 s~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe----~~L~iIpVlNKIDlp~ad 193 (650)
T KOG0462|consen 139 SGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFE----AGLAIIPVLNKIDLPSAD 193 (650)
T ss_pred cceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHH----cCCeEEEeeeccCCCCCC
Confidence 8877888999999999999998755555444444333 457799999999998765
No 288
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.16 E-value=3.5e-10 Score=81.94 Aligned_cols=120 Identities=18% Similarity=0.168 Sum_probs=86.6
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHhCCCCc-------------ccccceeeEEEEEE----EEE-CCcEEEEEEEeCCCc
Q 032487 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIE-------------FQESTIGAAFFSQT----LAV-NDATVKFEIWDTAGQ 69 (139)
Q Consensus 8 ~~~~ki~i~G~~~~GKssli~~l~~~~~~~-------------~~~~~~~~~~~~~~----~~~-~~~~~~~~i~d~~g~ 69 (139)
+..-+..|+.+-.-|||||..+++...-.- .-.+--|.+..... +.. ++..+.+.++||||+
T Consensus 7 ~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGH 86 (603)
T COG0481 7 KNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGH 86 (603)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCc
Confidence 344578899999999999999988642110 00111233332222 222 447799999999999
Q ss_pred ccccccchhhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCCc
Q 032487 70 ERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131 (139)
Q Consensus 70 ~~~~~~~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~~ 131 (139)
-+|..--.+.+..|.++++++|++....-..+.+....+.+ ++-++.|.||+||+.+.
T Consensus 87 VDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~----~LeIiPViNKIDLP~Ad 144 (603)
T COG0481 87 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN----NLEIIPVLNKIDLPAAD 144 (603)
T ss_pred cceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHc----CcEEEEeeecccCCCCC
Confidence 99988778889999999999999998776666666555554 46689999999998764
No 289
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.16 E-value=1.1e-10 Score=77.50 Aligned_cols=119 Identities=21% Similarity=0.341 Sum_probs=76.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCC-CCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccc-----cccchhhhcCC
Q 032487 10 NAKLVLLGDVGAGKSSLVLRFVKGQ-FIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERY-----HSLAPMYYRGA 83 (139)
Q Consensus 10 ~~ki~i~G~~~~GKssli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~-----~~~~~~~~~~~ 83 (139)
.-|++++|..|+||||+-..+...- ......++...++.-...++-| ...+.+||++|++.+ .......+.+.
T Consensus 4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflG-nl~LnlwDcGgqe~fmen~~~~q~d~iF~nV 82 (295)
T KOG3886|consen 4 KKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLG-NLVLNLWDCGGQEEFMENYLSSQEDNIFRNV 82 (295)
T ss_pred cceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhh-hheeehhccCCcHHHHHHHHhhcchhhheeh
Confidence 4589999999999999754443211 1111222222233233333333 267999999999732 22345578899
Q ss_pred CEEEEEEECCCHHH---HHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCC
Q 032487 84 AAAIIVYDITNQAS---FERAKKWVQELQAQGNPNMVMALAGNKADLLDA 130 (139)
Q Consensus 84 ~~~i~v~~~~~~~s---~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~ 130 (139)
++++.+||+...+- +...+..++.+.++ .+...+....+|.|+...
T Consensus 83 ~vli~vFDves~e~~~D~~~yqk~Le~ll~~-SP~AkiF~l~hKmDLv~~ 131 (295)
T KOG3886|consen 83 QVLIYVFDVESREMEKDFHYYQKCLEALLQN-SPEAKIFCLLHKMDLVQE 131 (295)
T ss_pred eeeeeeeeccchhhhhhHHHHHHHHHHHHhc-CCcceEEEEEeechhccc
Confidence 99999999987543 44445566666665 456678888999998654
No 290
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.14 E-value=4.4e-10 Score=88.98 Aligned_cols=103 Identities=20% Similarity=0.225 Sum_probs=69.2
Q ss_pred CcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCc-----------E-----EEEEEEeCCCcccccccchhhhcCCC
Q 032487 21 AGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDA-----------T-----VKFEIWDTAGQERYHSLAPMYYRGAA 84 (139)
Q Consensus 21 ~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~-----~~~~i~d~~g~~~~~~~~~~~~~~~~ 84 (139)
++||||+.++.+..........+..+.....+..+.. . ..+.+|||||++.+.......+..+|
T Consensus 472 ~~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aD 551 (1049)
T PRK14845 472 VHNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLAD 551 (1049)
T ss_pred cccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCC
Confidence 3499999999988765443333332222222222210 0 13899999999998887777778899
Q ss_pred EEEEEEECCC---HHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCC
Q 032487 85 AAIIVYDITN---QASFERAKKWVQELQAQGNPNMVMALAGNKADLLDA 130 (139)
Q Consensus 85 ~~i~v~~~~~---~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~ 130 (139)
++++|+|+++ +.+++.+. .+.. .+.|+++++||+|+...
T Consensus 552 ivlLVVDa~~Gi~~qT~e~I~----~lk~---~~iPiIVViNKiDL~~~ 593 (1049)
T PRK14845 552 LAVLVVDINEGFKPQTIEAIN----ILRQ---YKTPFVVAANKIDLIPG 593 (1049)
T ss_pred EEEEEEECcccCCHhHHHHHH----HHHH---cCCCEEEEEECCCCccc
Confidence 9999999987 34444332 2332 25799999999999654
No 291
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.13 E-value=4.1e-10 Score=79.47 Aligned_cols=74 Identities=19% Similarity=0.293 Sum_probs=55.9
Q ss_pred EEEEEEEeCCCcccccccchhhhcCCCEEEEEEECCCH-------HHHHHHHH---HHHHHHHhC-CCCCeEEEEEeCCC
Q 032487 58 TVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQ-------ASFERAKK---WVQELQAQG-NPNMVMALAGNKAD 126 (139)
Q Consensus 58 ~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~~~~~~-------~s~~~~~~---~~~~~~~~~-~~~~p~ivv~~k~D 126 (139)
+..+.++|.+||..-+..|..+|.+++++++|+++++= ....++.+ +++.+-+.. -.+.++|++.||.|
T Consensus 194 ~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsiiLFLNK~D 273 (354)
T KOG0082|consen 194 GLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSIILFLNKKD 273 (354)
T ss_pred CCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEEEEeecHH
Confidence 37899999999999999999999999999999998852 12333443 333343332 25789999999999
Q ss_pred CcCCc
Q 032487 127 LLDAR 131 (139)
Q Consensus 127 ~~~~~ 131 (139)
+.++.
T Consensus 274 LFeEK 278 (354)
T KOG0082|consen 274 LFEEK 278 (354)
T ss_pred HHHHH
Confidence 97653
No 292
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.12 E-value=5.3e-10 Score=80.82 Aligned_cols=118 Identities=20% Similarity=0.235 Sum_probs=87.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCCC--Cc------------ccccceeeEEEEEEEEECCcEEEEEEEeCCCccccccc
Q 032487 10 NAKLVLLGDVGAGKSSLVLRFVKGQF--IE------------FQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSL 75 (139)
Q Consensus 10 ~~ki~i~G~~~~GKssli~~l~~~~~--~~------------~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~ 75 (139)
.-+|+|+.+..-|||||+..|+...- .. .-..--|++...+...++++.+++.|.||||+-+|..-
T Consensus 5 iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGE 84 (603)
T COG1217 5 IRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGE 84 (603)
T ss_pred cceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccch
Confidence 45799999999999999999986532 11 01223366677777777777799999999999988887
Q ss_pred chhhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCCc
Q 032487 76 APMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131 (139)
Q Consensus 76 ~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~~ 131 (139)
-...+.=.|++++++|+.+. ...+.+..++.... .+++-|+|.||+|.++++
T Consensus 85 VERvl~MVDgvlLlVDA~EG-pMPQTrFVlkKAl~---~gL~PIVVvNKiDrp~Ar 136 (603)
T COG1217 85 VERVLSMVDGVLLLVDASEG-PMPQTRFVLKKALA---LGLKPIVVINKIDRPDAR 136 (603)
T ss_pred hhhhhhhcceEEEEEEcccC-CCCchhhhHHHHHH---cCCCcEEEEeCCCCCCCC
Confidence 77788889999999999873 22223333333332 357788999999998875
No 293
>PTZ00258 GTP-binding protein; Provisional
Probab=99.12 E-value=8.6e-10 Score=79.32 Aligned_cols=86 Identities=20% Similarity=0.079 Sum_probs=57.2
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCc---------------EEEEEEEeCCCcccc
Q 032487 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDA---------------TVKFEIWDTAGQERY 72 (139)
Q Consensus 8 ~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~d~~g~~~~ 72 (139)
....++.|+|.||+|||||+|.|.+........+..+.+.....+.+.+. ..++.++|+||....
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~g 98 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKG 98 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcC
Confidence 45679999999999999999999887654433344433333333433321 235899999996422
Q ss_pred cc-------cchhhhcCCCEEEEEEECC
Q 032487 73 HS-------LAPMYYRGAAAAIIVYDIT 93 (139)
Q Consensus 73 ~~-------~~~~~~~~~~~~i~v~~~~ 93 (139)
.. .....++.+|++++|+|..
T Consensus 99 a~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 99 ASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred CcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 11 1122467899999999973
No 294
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.10 E-value=1.9e-09 Score=73.09 Aligned_cols=69 Identities=14% Similarity=0.151 Sum_probs=42.1
Q ss_pred EEEEEEeCCCcccc-------------cccchhhhcC-CCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeC
Q 032487 59 VKFEIWDTAGQERY-------------HSLAPMYYRG-AAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNK 124 (139)
Q Consensus 59 ~~~~i~d~~g~~~~-------------~~~~~~~~~~-~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k 124 (139)
..|.++|+||.... ......++++ .+++++|+|++..-.-....++.+.+. +...|+++|.||
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld---~~~~rti~ViTK 201 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVD---PQGERTIGVITK 201 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHH---HcCCcEEEEEEC
Confidence 57899999997421 1122345564 458888998765322111223333333 356889999999
Q ss_pred CCCcCC
Q 032487 125 ADLLDA 130 (139)
Q Consensus 125 ~D~~~~ 130 (139)
+|..++
T Consensus 202 ~D~~~~ 207 (240)
T smart00053 202 LDLMDE 207 (240)
T ss_pred CCCCCc
Confidence 998754
No 295
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=99.09 E-value=1.2e-09 Score=81.88 Aligned_cols=118 Identities=17% Similarity=0.219 Sum_probs=84.6
Q ss_pred CCcceeEEEEEcCCCCcHHHHHHHHHhCCCCccccc-----------------ceeeEEEEEEE---EECCcEEEEEEEe
Q 032487 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQES-----------------TIGAAFFSQTL---AVNDATVKFEIWD 65 (139)
Q Consensus 6 ~~~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~-----------------~~~~~~~~~~~---~~~~~~~~~~i~d 65 (139)
......++.++|+-..|||+|+..|....++..... ..++.....++ ..+++++-+++.|
T Consensus 124 ~p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilD 203 (971)
T KOG0468|consen 124 NPERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILD 203 (971)
T ss_pred CcceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeec
Confidence 346678899999999999999999987655432111 11111111111 1256678899999
Q ss_pred CCCcccccccchhhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCC
Q 032487 66 TAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADL 127 (139)
Q Consensus 66 ~~g~~~~~~~~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~ 127 (139)
|||+-+|-.-....++.+|++++++|+.+...+..-+-. +.....++|+.+|.||.|.
T Consensus 204 TPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~i----khaiq~~~~i~vviNKiDR 261 (971)
T KOG0468|consen 204 TPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTERII----KHAIQNRLPIVVVINKVDR 261 (971)
T ss_pred CCCcccchHHHHHHhhhcceEEEEEEcccCceeeHHHHH----HHHHhccCcEEEEEehhHH
Confidence 999999888778889999999999999988776543322 2222357899999999995
No 296
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.08 E-value=1e-09 Score=78.19 Aligned_cols=83 Identities=22% Similarity=0.094 Sum_probs=54.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCc---------------EEEEEEEeCCCcccccc-
Q 032487 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDA---------------TVKFEIWDTAGQERYHS- 74 (139)
Q Consensus 11 ~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~d~~g~~~~~~- 74 (139)
+++.++|.|++|||||+|++.+........+..+.+.....+.+.+. ..++.+.|+||......
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 68999999999999999999987743323333332333333333221 13589999999643211
Q ss_pred ---c---chhhhcCCCEEEEEEECC
Q 032487 75 ---L---APMYYRGAAAAIIVYDIT 93 (139)
Q Consensus 75 ---~---~~~~~~~~~~~i~v~~~~ 93 (139)
+ ....++.+|++++|+|+.
T Consensus 83 g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 83 GEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 1 122467899999999973
No 297
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.07 E-value=3.7e-10 Score=77.85 Aligned_cols=80 Identities=21% Similarity=0.090 Sum_probs=52.3
Q ss_pred EEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCc---------------EEEEEEEeCCCcccccc---
Q 032487 13 LVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDA---------------TVKFEIWDTAGQERYHS--- 74 (139)
Q Consensus 13 i~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~d~~g~~~~~~--- 74 (139)
+.++|.|++|||||+|+|.+.+......+..+.+.....+.+.+. ..++.++|+||......
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 478999999999999999987764333333333333333333332 23589999999642211
Q ss_pred -c---chhhhcCCCEEEEEEEC
Q 032487 75 -L---APMYYRGAAAAIIVYDI 92 (139)
Q Consensus 75 -~---~~~~~~~~~~~i~v~~~ 92 (139)
+ .-..++.+|++++|+|+
T Consensus 81 glg~~fL~~i~~~D~li~VV~~ 102 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRC 102 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeC
Confidence 1 11236789999999986
No 298
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.06 E-value=7.7e-10 Score=78.09 Aligned_cols=119 Identities=15% Similarity=0.263 Sum_probs=78.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCcccc-cceeeEEEEEEEEEC------Cc--------------------------
Q 032487 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQE-STIGAAFFSQTLAVN------DA-------------------------- 57 (139)
Q Consensus 11 ~ki~i~G~~~~GKssli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~------~~-------------------------- 57 (139)
.=|+++|+-++||||||+.|+..+++.... +-..+++.......+ +.
T Consensus 59 Pmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf~c 138 (532)
T KOG1954|consen 59 PMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRFMC 138 (532)
T ss_pred ceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHHHH
Confidence 348999999999999999999988764210 111111111111110 00
Q ss_pred -------EEEEEEEeCCCcc-----------cccccchhhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEE
Q 032487 58 -------TVKFEIWDTAGQE-----------RYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMA 119 (139)
Q Consensus 58 -------~~~~~i~d~~g~~-----------~~~~~~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~i 119 (139)
--+++++||||.- .|......+...+|.++++||..-.+.-++.++.+..++.+. -.+-
T Consensus 139 sqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~E---dkiR 215 (532)
T KOG1954|consen 139 SQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGHE---DKIR 215 (532)
T ss_pred hcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCCc---ceeE
Confidence 1267899999952 233344556788999999999887666666777777777653 3377
Q ss_pred EEEeCCCCcCCcC
Q 032487 120 LAGNKADLLDARK 132 (139)
Q Consensus 120 vv~~k~D~~~~~~ 132 (139)
+|.||.|..+..|
T Consensus 216 VVLNKADqVdtqq 228 (532)
T KOG1954|consen 216 VVLNKADQVDTQQ 228 (532)
T ss_pred EEeccccccCHHH
Confidence 8889999877543
No 299
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=99.03 E-value=5.2e-09 Score=77.35 Aligned_cols=124 Identities=22% Similarity=0.253 Sum_probs=88.1
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHhCC--C---------------------------CcccccceeeEEEEEEEEECCc
Q 032487 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQ--F---------------------------IEFQESTIGAAFFSQTLAVNDA 57 (139)
Q Consensus 7 ~~~~~ki~i~G~~~~GKssli~~l~~~~--~---------------------------~~~~~~~~~~~~~~~~~~~~~~ 57 (139)
....+.++++|+..+||||++.+++..- . .....+.-|++..+.+..++-.
T Consensus 174 ~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~ 253 (603)
T KOG0458|consen 174 PKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESK 253 (603)
T ss_pred CccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecC
Confidence 3467899999999999999999877531 1 0112234455666677777777
Q ss_pred EEEEEEEeCCCcccccccchhhhcCCCEEEEEEECCCH---HHHH---HHHHHHHHHHHhCCCCCeEEEEEeCCCCcCCc
Q 032487 58 TVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQ---ASFE---RAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131 (139)
Q Consensus 58 ~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~~~~~~---~s~~---~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~~ 131 (139)
...+++.|.||+..|..-...-...+|++++|+|++.. ..|+ ..++....++..+ -..++|+.||.|+.+..
T Consensus 254 ~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lg--i~qlivaiNKmD~V~Ws 331 (603)
T KOG0458|consen 254 SKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLG--ISQLIVAINKMDLVSWS 331 (603)
T ss_pred ceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcC--cceEEEEeecccccCcc
Confidence 78899999999887776555556789999999998853 1222 2445555555543 34589999999998764
Q ss_pred C
Q 032487 132 K 132 (139)
Q Consensus 132 ~ 132 (139)
+
T Consensus 332 q 332 (603)
T KOG0458|consen 332 Q 332 (603)
T ss_pred H
Confidence 4
No 300
>PRK09866 hypothetical protein; Provisional
Probab=99.02 E-value=6.4e-09 Score=78.42 Aligned_cols=69 Identities=20% Similarity=0.203 Sum_probs=46.2
Q ss_pred EEEEEEeCCCccccc-c----cchhhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcC
Q 032487 59 VKFEIWDTAGQERYH-S----LAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLD 129 (139)
Q Consensus 59 ~~~~i~d~~g~~~~~-~----~~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~ 129 (139)
.++.+.||||..... . .....+..+|++++|+|+...-+... +..++.+... ....|+++|.||+|+.+
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D-eeIlk~Lkk~-~K~~PVILVVNKIDl~d 303 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD-EEVREAILAV-GQSVPLYVLVNKFDQQD 303 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH-HHHHHHHHhc-CCCCCEEEEEEcccCCC
Confidence 467899999975432 1 22346888999999999987433222 2344445443 22369999999999864
No 301
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=99.02 E-value=9.5e-10 Score=68.93 Aligned_cols=54 Identities=26% Similarity=0.311 Sum_probs=40.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCc
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQ 69 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~ 69 (139)
+++++|.+|+|||||+|++.+..... .....+.+.....+..++ .+.+|||||.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVS-VSATPGKTKHFQTIFLTP---TITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcee-eCCCCCcccceEEEEeCC---CEEEEECCCc
Confidence 89999999999999999999876543 233344445555555544 4799999995
No 302
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.01 E-value=8.9e-09 Score=74.19 Aligned_cols=115 Identities=17% Similarity=0.228 Sum_probs=71.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhC----CCCc----------cccccee---eEEEE-----EEEE---ECCcEEEEEEE
Q 032487 10 NAKLVLLGDVGAGKSSLVLRFVKG----QFIE----------FQESTIG---AAFFS-----QTLA---VNDATVKFEIW 64 (139)
Q Consensus 10 ~~ki~i~G~~~~GKssli~~l~~~----~~~~----------~~~~~~~---~~~~~-----~~~~---~~~~~~~~~i~ 64 (139)
++-|.++|+.++|||||+++|.+. .... -..+..| .+..+ +.+. .++.+..+.++
T Consensus 17 ~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~VrlI 96 (492)
T TIGR02836 17 DIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRLV 96 (492)
T ss_pred cEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEEE
Confidence 567999999999999999999987 3221 0112222 11111 1122 24556789999
Q ss_pred eCCCccc--------ccc------c---------------chhhhc-CCCEEEEEE-ECC----CH-HHHHHHHHHHHHH
Q 032487 65 DTAGQER--------YHS------L---------------APMYYR-GAAAAIIVY-DIT----NQ-ASFERAKKWVQEL 108 (139)
Q Consensus 65 d~~g~~~--------~~~------~---------------~~~~~~-~~~~~i~v~-~~~----~~-~s~~~~~~~~~~~ 108 (139)
||+|-.. ... . ....+. .+|+.++|. |.+ .+ ...+.-.+++..+
T Consensus 97 DcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~eL 176 (492)
T TIGR02836 97 DCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEEL 176 (492)
T ss_pred ECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHHH
Confidence 9998521 011 0 111234 688999888 663 11 2233345777777
Q ss_pred HHhCCCCCeEEEEEeCCCC
Q 032487 109 QAQGNPNMVMALAGNKADL 127 (139)
Q Consensus 109 ~~~~~~~~p~ivv~~k~D~ 127 (139)
+.. ++|++++.|++|.
T Consensus 177 k~~---~kPfiivlN~~dp 192 (492)
T TIGR02836 177 KEL---NKPFIILLNSTHP 192 (492)
T ss_pred Hhc---CCCEEEEEECcCC
Confidence 754 7899999999994
No 303
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=98.99 E-value=1.2e-10 Score=78.93 Aligned_cols=71 Identities=15% Similarity=0.132 Sum_probs=36.6
Q ss_pred EEEEEeCCCcccccccchhhh--------cCCCEEEEEEECCCHHH-HHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCC
Q 032487 60 KFEIWDTAGQERYHSLAPMYY--------RGAAAAIIVYDITNQAS-FERAKKWVQELQAQGNPNMVMALAGNKADLLDA 130 (139)
Q Consensus 60 ~~~i~d~~g~~~~~~~~~~~~--------~~~~~~i~v~~~~~~~s-~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~ 130 (139)
.+.++|||||.++...+.... ...-++++++|.....+ ...+..++-.+.....-..|.+.|.||+|+...
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~~~ 171 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLLSK 171 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS-H
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCcccc
Confidence 689999999977665554322 33457788888764322 111333333322221247999999999999763
No 304
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.97 E-value=1.3e-08 Score=71.72 Aligned_cols=63 Identities=17% Similarity=0.370 Sum_probs=47.6
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHhCCCCcc----------cccceeeEEEEEEEEECCcEEEEEEEeCCCc
Q 032487 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEF----------QESTIGAAFFSQTLAVNDATVKFEIWDTAGQ 69 (139)
Q Consensus 7 ~~~~~ki~i~G~~~~GKssli~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~ 69 (139)
+...++|+++|+.|+|||||+|.|++...... ..++.........+..++..+.+.++||||.
T Consensus 20 ~Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGf 92 (373)
T COG5019 20 KGIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGF 92 (373)
T ss_pred cCCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCc
Confidence 35689999999999999999999998743322 2234444455555666788899999999985
No 305
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.97 E-value=7.8e-09 Score=73.17 Aligned_cols=119 Identities=15% Similarity=0.203 Sum_probs=72.0
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHhCCCCcc---------cccceeeEEEEEEEEECCcEEEEEEEeCCCcccc---cc
Q 032487 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEF---------QESTIGAAFFSQTLAVNDATVKFEIWDTAGQERY---HS 74 (139)
Q Consensus 7 ~~~~~ki~i~G~~~~GKssli~~l~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~---~~ 74 (139)
+...+.++++|..|.|||||+|.|+...+... ...+..+......+.-++.++++++.||||..+. ..
T Consensus 18 kG~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~ 97 (366)
T KOG2655|consen 18 KGFDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSN 97 (366)
T ss_pred cCCceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccc
Confidence 34569999999999999999999998754432 1223333344444555778899999999985211 01
Q ss_pred cc----------------------hhhhc--CCCEEEEEEECCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEeCCCCcC
Q 032487 75 LA----------------------PMYYR--GAAAAIIVYDITNQASFERA-KKWVQELQAQGNPNMVMALAGNKADLLD 129 (139)
Q Consensus 75 ~~----------------------~~~~~--~~~~~i~v~~~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~~k~D~~~ 129 (139)
.| +..+. ..++|++.+..+... +..+ -..++.+ ...+.+|.|..|+|...
T Consensus 98 ~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghg-L~p~Di~~Mk~l----~~~vNiIPVI~KaD~lT 172 (366)
T KOG2655|consen 98 CWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHG-LKPLDIEFMKKL----SKKVNLIPVIAKADTLT 172 (366)
T ss_pred cchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCC-CcHhhHHHHHHH----hccccccceeeccccCC
Confidence 11 11223 356777777754321 1111 1222222 24566888889999765
Q ss_pred C
Q 032487 130 A 130 (139)
Q Consensus 130 ~ 130 (139)
.
T Consensus 173 ~ 173 (366)
T KOG2655|consen 173 K 173 (366)
T ss_pred H
Confidence 4
No 306
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.97 E-value=2.7e-09 Score=69.05 Aligned_cols=58 Identities=21% Similarity=0.279 Sum_probs=41.6
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCc
Q 032487 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQ 69 (139)
Q Consensus 8 ~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~ 69 (139)
...++++++|.||+|||||+|++.+..... .....|.+.....+..+. .+.++||||.
T Consensus 115 ~~~~~~~~vG~pnvGKSslin~l~~~~~~~-~~~~pg~T~~~~~~~~~~---~~~l~DtPGi 172 (172)
T cd04178 115 KTSITVGVVGFPNVGKSSLINSLKRSRACN-VGATPGVTKSMQEVHLDK---KVKLLDSPGI 172 (172)
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCcccce-ecCCCCeEcceEEEEeCC---CEEEEECcCC
Confidence 335799999999999999999999876543 233445555444444432 4789999983
No 307
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.95 E-value=3.9e-09 Score=67.28 Aligned_cols=57 Identities=16% Similarity=0.198 Sum_probs=39.3
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCc
Q 032487 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQ 69 (139)
Q Consensus 9 ~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~ 69 (139)
...+++++|.+|+|||||+|+|.+..... ..+..|.+.....+..+. .+.++||||.
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~-~~~~~g~T~~~~~~~~~~---~~~liDtPGi 157 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVCK-VAPIPGETKVWQYITLMK---RIYLIDCPGV 157 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCcee-eCCCCCeeEeEEEEEcCC---CEEEEECcCC
Confidence 45789999999999999999999865433 233344444444333322 3689999983
No 308
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=98.95 E-value=1.8e-09 Score=81.80 Aligned_cols=119 Identities=23% Similarity=0.251 Sum_probs=79.5
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHhCCCCccc----ccceeeEEEEEE--------EEECC----cEEEEEEEeCCCcccc
Q 032487 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQ----ESTIGAAFFSQT--------LAVND----ATVKFEIWDTAGQERY 72 (139)
Q Consensus 9 ~~~ki~i~G~~~~GKssli~~l~~~~~~~~~----~~~~~~~~~~~~--------~~~~~----~~~~~~i~d~~g~~~~ 72 (139)
+..=|||+|+..+|||-|+..+.+...-... +.-+|.++.+.. +.-+. .---+.++||||++.|
T Consensus 474 RSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsF 553 (1064)
T KOG1144|consen 474 RSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESF 553 (1064)
T ss_pred CCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhh
Confidence 4455899999999999999999876543322 223333333321 00001 1124678999999999
Q ss_pred cccchhhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCCc
Q 032487 73 HSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131 (139)
Q Consensus 73 ~~~~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~~ 131 (139)
..+......-||.+|+|+|+...-.- ..+..+.....++.|||+.+||+|..-..
T Consensus 554 tnlRsrgsslC~~aIlvvdImhGlep----qtiESi~lLR~rktpFivALNKiDRLYgw 608 (1064)
T KOG1144|consen 554 TNLRSRGSSLCDLAILVVDIMHGLEP----QTIESINLLRMRKTPFIVALNKIDRLYGW 608 (1064)
T ss_pred hhhhhccccccceEEEEeehhccCCc----chhHHHHHHHhcCCCeEEeehhhhhhccc
Confidence 99999888999999999998753111 12222233334688999999999976543
No 309
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=98.95 E-value=3.5e-09 Score=76.16 Aligned_cols=118 Identities=14% Similarity=0.128 Sum_probs=80.5
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHh--CCCC--------------------cccccceeeEEEEEEEEECCcEEEEEEEe
Q 032487 8 NINAKLVLLGDVGAGKSSLVLRFVK--GQFI--------------------EFQESTIGAAFFSQTLAVNDATVKFEIWD 65 (139)
Q Consensus 8 ~~~~ki~i~G~~~~GKssli~~l~~--~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~d 65 (139)
.++-..+||-+|.+|||||-++|+. +... -+..+.++++..+-.+.++ ...+.+.|
T Consensus 10 ~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~--~~~iNLLD 87 (528)
T COG4108 10 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYA--DCLVNLLD 87 (528)
T ss_pred hhhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccC--CeEEeccC
Confidence 4566789999999999999998773 2110 0122334443333344444 48899999
Q ss_pred CCCcccccccchhhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCCc
Q 032487 66 TAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131 (139)
Q Consensus 66 ~~g~~~~~~~~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~~ 131 (139)
|||+++|..-.=.-+..+|.+++|+|+...-.- +.++.+.-...+++|++-+.||.|.....
T Consensus 88 TPGHeDFSEDTYRtLtAvDsAvMVIDaAKGiE~----qT~KLfeVcrlR~iPI~TFiNKlDR~~rd 149 (528)
T COG4108 88 TPGHEDFSEDTYRTLTAVDSAVMVIDAAKGIEP----QTLKLFEVCRLRDIPIFTFINKLDREGRD 149 (528)
T ss_pred CCCccccchhHHHHHHhhheeeEEEecccCccH----HHHHHHHHHhhcCCceEEEeeccccccCC
Confidence 999998877666668889999999998754221 22233333335689999999999976543
No 310
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.91 E-value=5.8e-09 Score=67.44 Aligned_cols=58 Identities=19% Similarity=0.203 Sum_probs=42.3
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCc
Q 032487 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQ 69 (139)
Q Consensus 8 ~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~ 69 (139)
...++++++|.+++||||++|++.+..... .....+++.....+..+ ..+.++||||.
T Consensus 113 ~~~~~~~~~G~~~vGKstlin~l~~~~~~~-~~~~~~~T~~~~~~~~~---~~~~~iDtpG~ 170 (171)
T cd01856 113 PRGIRAMVVGIPNVGKSTLINRLRGKKVAK-VGNKPGVTKGIQWIKIS---PGIYLLDTPGI 170 (171)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcee-ecCCCCEEeeeEEEEec---CCEEEEECCCC
Confidence 455799999999999999999999876542 23334445555555554 34789999994
No 311
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=98.88 E-value=3.2e-08 Score=72.99 Aligned_cols=97 Identities=19% Similarity=0.386 Sum_probs=64.8
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEEC--CcEEEEEEEeCCCcccccccchhhhcC---
Q 032487 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVN--DATVKFEIWDTAGQERYHSLAPMYYRG--- 82 (139)
Q Consensus 8 ~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~d~~g~~~~~~~~~~~~~~--- 82 (139)
...-.|+|+|..++|||||+.+|.+.+. +.++.+.+|....+..+ +...++.+|...|...+..+....+..
T Consensus 23 ~~~k~vlvlG~~~~GKttli~~L~~~e~---~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l 99 (472)
T PF05783_consen 23 PSEKSVLVLGDKGSGKTTLIARLQGIED---PKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENL 99 (472)
T ss_pred CCCceEEEEeCCCCchHHHHHHhhccCC---CCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccc
Confidence 4456899999999999999999876543 33445555544433332 234678999999866666655544443
Q ss_pred -CCEEEEEEECCCHHH-HHHHHHHHHH
Q 032487 83 -AAAAIIVYDITNQAS-FERAKKWVQE 107 (139)
Q Consensus 83 -~~~~i~v~~~~~~~s-~~~~~~~~~~ 107 (139)
--++++|+|.+.|.. ++.++.|+..
T Consensus 100 ~~t~vvIvlDlS~PW~~~esL~~W~~v 126 (472)
T PF05783_consen 100 PNTLVVIVLDLSKPWNIMESLEKWLSV 126 (472)
T ss_pred cceEEEEEecCCChHHHHHHHHHHHHH
Confidence 248888999999865 4445555544
No 312
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=98.88 E-value=1.4e-09 Score=65.59 Aligned_cols=103 Identities=20% Similarity=0.204 Sum_probs=66.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCccc----ccccchhhhcCCCEEE
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER----YHSLAPMYYRGAAAAI 87 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~----~~~~~~~~~~~~~~~i 87 (139)
|++++|..|||||||.+++.+...-. ..+ ..++++.. -.+||||.-- +..-.......+|+++
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~ly--kKT-------QAve~~d~----~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~ 69 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDTLY--KKT-------QAVEFNDK----GDIDTPGEYFEHPRWYHALITTLQDADVII 69 (148)
T ss_pred eeEEecccccCchhHHHHhhcchhhh--ccc-------ceeeccCc----cccCCchhhhhhhHHHHHHHHHhhccceee
Confidence 79999999999999999999865322 222 22333331 2579998421 1111233467899999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCCcCCC
Q 032487 88 IVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVT 134 (139)
Q Consensus 88 ~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~~~v~ 134 (139)
++-+++++.+.-. ..+.. .-..|+|=|.+|.|+.+...++
T Consensus 70 ~v~~and~~s~f~-----p~f~~--~~~k~vIgvVTK~DLaed~dI~ 109 (148)
T COG4917 70 YVHAANDPESRFP-----PGFLD--IGVKKVIGVVTKADLAEDADIS 109 (148)
T ss_pred eeecccCccccCC-----ccccc--ccccceEEEEecccccchHhHH
Confidence 9999999866211 11111 1245699999999999655444
No 313
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.86 E-value=1e-08 Score=71.07 Aligned_cols=58 Identities=24% Similarity=0.331 Sum_probs=42.4
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCc
Q 032487 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQ 69 (139)
Q Consensus 8 ~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~ 69 (139)
...++++++|.+|+|||||+|+|.+...... ....|.+.....+..+. .+.++||||.
T Consensus 116 ~~~~~~~~vG~~nvGKSslin~l~~~~~~~~-~~~~g~T~~~~~~~~~~---~~~l~DtPG~ 173 (276)
T TIGR03596 116 NRPIRAMIVGIPNVGKSTLINRLAGKKVAKV-GNRPGVTKGQQWIKLSD---GLELLDTPGI 173 (276)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcccc-CCCCCeecceEEEEeCC---CEEEEECCCc
Confidence 4568999999999999999999998664432 33444555555555533 4789999997
No 314
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.86 E-value=1.3e-08 Score=64.81 Aligned_cols=57 Identities=21% Similarity=0.212 Sum_probs=39.9
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCc
Q 032487 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQ 69 (139)
Q Consensus 9 ~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~ 69 (139)
...+++++|.+++||||++|++.+.... ...++.+.+.....+..++ .+.+|||||.
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~~-~~~~~~~~t~~~~~~~~~~---~~~~~DtpGi 156 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRHSA-STSPSPGYTKGEQLVKITS---KIYLLDTPGV 156 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCcc-ccCCCCCeeeeeEEEEcCC---CEEEEECcCC
Confidence 4578999999999999999999975533 2344555544333333322 5899999983
No 315
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.85 E-value=1.7e-08 Score=70.34 Aligned_cols=59 Identities=20% Similarity=0.286 Sum_probs=43.4
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcc
Q 032487 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQE 70 (139)
Q Consensus 8 ~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~ 70 (139)
...++++++|.+|+||||++|+|.+.+... .....|.+.....+..+. .+.++||||..
T Consensus 119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~-~~~~~g~T~~~~~~~~~~---~~~l~DtPGi~ 177 (287)
T PRK09563 119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAK-TGNRPGVTKAQQWIKLGK---GLELLDTPGIL 177 (287)
T ss_pred cCceEEEEECCCCCCHHHHHHHHhcCCccc-cCCCCCeEEEEEEEEeCC---cEEEEECCCcC
Confidence 456899999999999999999999876533 233445555555555443 47899999973
No 316
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=98.85 E-value=7.9e-08 Score=67.69 Aligned_cols=122 Identities=23% Similarity=0.202 Sum_probs=80.9
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHhCCCCc-------------------------------ccccceeeEEEEEEEEEC
Q 032487 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIE-------------------------------FQESTIGAAFFSQTLAVN 55 (139)
Q Consensus 7 ~~~~~ki~i~G~~~~GKssli~~l~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~ 55 (139)
.+..++++-+|...-||||||-+|+...-.- +..+-.|++..+....+.
T Consensus 3 ~k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFs 82 (431)
T COG2895 3 HKSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFS 82 (431)
T ss_pred cccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecc
Confidence 3567899999999999999999988653100 001122444444444444
Q ss_pred CcEEEEEEEeCCCcccccccchhhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCCc
Q 032487 56 DATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131 (139)
Q Consensus 56 ~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~~ 131 (139)
..+-+|.+-||||+++|..-...-..-||++++++|+.. .-+++.++.--...-. .-..+++..||+||.+-.
T Consensus 83 T~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~-Gvl~QTrRHs~I~sLL--GIrhvvvAVNKmDLvdy~ 155 (431)
T COG2895 83 TEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARK-GVLEQTRRHSFIASLL--GIRHVVVAVNKMDLVDYS 155 (431)
T ss_pred cccceEEEecCCcHHHHhhhhhcccccccEEEEEEecch-hhHHHhHHHHHHHHHh--CCcEEEEEEeeecccccC
Confidence 455789999999999998755555677999999999854 3344444332222222 124589999999998743
No 317
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.84 E-value=8.4e-09 Score=67.72 Aligned_cols=57 Identities=18% Similarity=0.293 Sum_probs=39.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCCCCc-------ccccceeeEEEEEEEEECCcEEEEEEEeCCCc
Q 032487 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIE-------FQESTIGAAFFSQTLAVNDATVKFEIWDTAGQ 69 (139)
Q Consensus 10 ~~ki~i~G~~~~GKssli~~l~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~ 69 (139)
..+++++|.+|+|||||+|+|.+..... ......|++.....+..+. .+.++||||.
T Consensus 127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~---~~~~~DtPG~ 190 (190)
T cd01855 127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN---GKKLYDTPGI 190 (190)
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCC---CCEEEeCcCC
Confidence 3579999999999999999999754311 1223335555555555543 4799999983
No 318
>PRK13768 GTPase; Provisional
Probab=98.80 E-value=4.7e-08 Score=67.03 Aligned_cols=70 Identities=19% Similarity=0.173 Sum_probs=43.5
Q ss_pred EEEEEeCCCccccc---ccchhh---hcC--CCEEEEEEECCCHH---HHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCc
Q 032487 60 KFEIWDTAGQERYH---SLAPMY---YRG--AAAAIIVYDITNQA---SFERAKKWVQELQAQGNPNMVMALAGNKADLL 128 (139)
Q Consensus 60 ~~~i~d~~g~~~~~---~~~~~~---~~~--~~~~i~v~~~~~~~---s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~ 128 (139)
.+.+||+||+.... ..+..+ +.. .+++++++|+.... .+.. ..|+...... ..+.|+++|+||+|+.
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~-~~~l~~~~~~-~~~~~~i~v~nK~D~~ 175 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVS-LLLLALSVQL-RLGLPQIPVLNKADLL 175 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHH-HHHHHHHHHH-HcCCCEEEEEEhHhhc
Confidence 68999999986533 222222 222 78999999996533 2222 2233222222 2478999999999987
Q ss_pred CCc
Q 032487 129 DAR 131 (139)
Q Consensus 129 ~~~ 131 (139)
...
T Consensus 176 ~~~ 178 (253)
T PRK13768 176 SEE 178 (253)
T ss_pred Cch
Confidence 653
No 319
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=98.79 E-value=2.6e-08 Score=75.70 Aligned_cols=130 Identities=18% Similarity=0.208 Sum_probs=89.1
Q ss_pred CCCcceeEEEEEcCCCCcHHHHHHHHHhCCCC--------------cccccceeeEEEEEEEEECCcEEEEEEEeCCCcc
Q 032487 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFI--------------EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQE 70 (139)
Q Consensus 5 ~~~~~~~ki~i~G~~~~GKssli~~l~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~ 70 (139)
.......+++++.+-.-|||||..+|....-. .+...+-|++..+..+..-.+.+.+.++|+||+-
T Consensus 4 ~~~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghv 83 (887)
T KOG0467|consen 4 KGSEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHV 83 (887)
T ss_pred CCCCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCcc
Confidence 34455678999999999999999998854311 1123344555555556655566899999999999
Q ss_pred cccccchhhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCC-CcCCcCCCcccc
Q 032487 71 RYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKAD-LLDARKVTAEAS 138 (139)
Q Consensus 71 ~~~~~~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D-~~~~~~v~~~e~ 138 (139)
+|...-.....-+|++++++|+.....-.... .++.... .+..+++|.||+| +..+-+.+.+|+
T Consensus 84 df~sevssas~l~d~alvlvdvvegv~~qt~~-vlrq~~~---~~~~~~lvinkidrl~~el~lsp~ea 148 (887)
T KOG0467|consen 84 DFSSEVSSASRLSDGALVLVDVVEGVCSQTYA-VLRQAWI---EGLKPILVINKIDRLITELKLSPQEA 148 (887)
T ss_pred chhhhhhhhhhhcCCcEEEEeeccccchhHHH-HHHHHHH---ccCceEEEEehhhhHHHHHhcChHHH
Confidence 99988888888899999999998754322211 2222221 2455889999999 344555555554
No 320
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.75 E-value=2.9e-08 Score=70.24 Aligned_cols=59 Identities=20% Similarity=0.277 Sum_probs=45.6
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCc
Q 032487 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQ 69 (139)
Q Consensus 7 ~~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~ 69 (139)
.....++.++|.|++||||+||+|.+..... ..+..|.+.....+..+.. +.++||||.
T Consensus 129 ~~~~~~v~vvG~PNVGKSslIN~L~~k~~~~-~s~~PG~Tk~~q~i~~~~~---i~LlDtPGi 187 (322)
T COG1161 129 LKRKIRVGVVGYPNVGKSTLINRLLGKKVAK-TSNRPGTTKGIQWIKLDDG---IYLLDTPGI 187 (322)
T ss_pred CccceEEEEEcCCCCcHHHHHHHHhccccee-eCCCCceecceEEEEcCCC---eEEecCCCc
Confidence 3456889999999999999999999877643 3444477666666666543 889999996
No 321
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.73 E-value=3.1e-07 Score=62.19 Aligned_cols=87 Identities=18% Similarity=0.173 Sum_probs=61.6
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccc-------cchhhhc
Q 032487 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHS-------LAPMYYR 81 (139)
Q Consensus 9 ~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~-------~~~~~~~ 81 (139)
-..+++++|.|++|||||+..+.........+.+...+.-+..+.+++ ..+++.|.||.-...+ ...+..+
T Consensus 61 GdaRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~g--a~IQllDLPGIieGAsqgkGRGRQviavAr 138 (364)
T KOG1486|consen 61 GDARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNG--ANIQLLDLPGIIEGASQGKGRGRQVIAVAR 138 (364)
T ss_pred CCeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecC--ceEEEecCcccccccccCCCCCceEEEEee
Confidence 356899999999999999999987554433444444555666677777 6789999998532211 1123356
Q ss_pred CCCEEEEEEECCCHHH
Q 032487 82 GAAAAIIVYDITNQAS 97 (139)
Q Consensus 82 ~~~~~i~v~~~~~~~s 97 (139)
-+|.+++|+|+...+.
T Consensus 139 taDlilMvLDatk~e~ 154 (364)
T KOG1486|consen 139 TADLILMVLDATKSED 154 (364)
T ss_pred cccEEEEEecCCcchh
Confidence 7999999999987544
No 322
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.72 E-value=2.2e-08 Score=68.29 Aligned_cols=61 Identities=23% Similarity=0.268 Sum_probs=51.1
Q ss_pred ccccccchhhhcCCCEEEEEEECCCHH-HHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCCcCC
Q 032487 70 ERYHSLAPMYYRGAAAAIIVYDITNQA-SFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKV 133 (139)
Q Consensus 70 ~~~~~~~~~~~~~~~~~i~v~~~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~~~v 133 (139)
+++..+.+.++.++|.+++|+|+.++. +++.+.+|+..+.. .+.|+++|+||+||.+.+++
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~---~~i~~vIV~NK~DL~~~~~~ 85 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA---QNIEPIIVLNKIDLLDDEDM 85 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEECcccCCCHHH
Confidence 566777778899999999999999877 89999999987654 46899999999999765444
No 323
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=98.70 E-value=2.4e-07 Score=62.32 Aligned_cols=61 Identities=20% Similarity=0.347 Sum_probs=45.7
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHhCCCCc---------ccccceeeEEEEEEEEECCcEEEEEEEeCCCc
Q 032487 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIE---------FQESTIGAAFFSQTLAVNDATVKFEIWDTAGQ 69 (139)
Q Consensus 9 ~~~ki~i~G~~~~GKssli~~l~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~ 69 (139)
..++|+++|.+|.||||++|.+....... -...+......+..+.-++.+.+++++||||.
T Consensus 45 F~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGf 114 (336)
T KOG1547|consen 45 FDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGF 114 (336)
T ss_pred CceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCc
Confidence 47899999999999999999988543322 12334444455566666888899999999984
No 324
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=98.69 E-value=3e-08 Score=68.28 Aligned_cols=121 Identities=16% Similarity=0.184 Sum_probs=81.0
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHhC---C----CCc-------ccccceeeEEEEEEEEECCcEEEEEEEeCCCcccc
Q 032487 7 KNINAKLVLLGDVGAGKSSLVLRFVKG---Q----FIE-------FQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERY 72 (139)
Q Consensus 7 ~~~~~ki~i~G~~~~GKssli~~l~~~---~----~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~ 72 (139)
.+..++|..+|+-.-|||||...+..- . ... -....-|++..+..+.+....-++...|+||+-+|
T Consensus 9 ~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaDY 88 (394)
T COG0050 9 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHADY 88 (394)
T ss_pred CCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHHH
Confidence 356789999999999999999876631 1 000 01223455666777777666678889999999776
Q ss_pred cccchhhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCC-eEEEEEeCCCCcCCc
Q 032487 73 HSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNM-VMALAGNKADLLDAR 131 (139)
Q Consensus 73 ~~~~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~-p~ivv~~k~D~~~~~ 131 (139)
-.-...-..++|+.|+|+++.|.-- .+.++.+-..++. .+ .++++.||+|+.+++
T Consensus 89 vKNMItgAaqmDgAILVVsA~dGpm-PqTrEHiLlarqv---Gvp~ivvflnK~Dmvdd~ 144 (394)
T COG0050 89 VKNMITGAAQMDGAILVVAATDGPM-PQTREHILLARQV---GVPYIVVFLNKVDMVDDE 144 (394)
T ss_pred HHHHhhhHHhcCccEEEEEcCCCCC-Ccchhhhhhhhhc---CCcEEEEEEecccccCcH
Confidence 5533344567899999999987311 1123333333333 34 488899999998754
No 325
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=98.69 E-value=1.2e-07 Score=67.34 Aligned_cols=84 Identities=19% Similarity=0.018 Sum_probs=56.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEEC----------------CcEEEEEEEeCCCcccc-
Q 032487 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVN----------------DATVKFEIWDTAGQERY- 72 (139)
Q Consensus 10 ~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~i~d~~g~~~~- 72 (139)
.+++-|+|.||+|||||.|.+.........+|+..++.......+. -....+.++|.+|.-.-
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 5789999999999999999999877554445555444433332221 12356889999985321
Q ss_pred ---cc---cchhhhcCCCEEEEEEECC
Q 032487 73 ---HS---LAPMYYRGAAAAIIVYDIT 93 (139)
Q Consensus 73 ---~~---~~~~~~~~~~~~i~v~~~~ 93 (139)
+. ..-..++.+|+++.|+++.
T Consensus 82 s~GeGLGNkFL~~IRevdaI~hVVr~f 108 (372)
T COG0012 82 SKGEGLGNKFLDNIREVDAIIHVVRCF 108 (372)
T ss_pred ccCCCcchHHHHhhhhcCeEEEEEEec
Confidence 11 1123478899999999876
No 326
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.68 E-value=8.9e-08 Score=60.90 Aligned_cols=58 Identities=19% Similarity=0.272 Sum_probs=38.7
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCc
Q 032487 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQ 69 (139)
Q Consensus 8 ~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~ 69 (139)
....+++++|.+|+|||||+|.+.+..... .....+++.....+..+ ..+.++||||.
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~-~~~~~~~t~~~~~~~~~---~~~~liDtPG~ 155 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNKLKLK-VGNVPGTTTSQQEVKLD---NKIKLLDTPGI 155 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHcccccc-ccCCCCcccceEEEEec---CCEEEEECCCC
Confidence 456789999999999999999999865322 11222233333333333 34889999983
No 327
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=98.68 E-value=1.9e-07 Score=65.26 Aligned_cols=98 Identities=19% Similarity=0.363 Sum_probs=66.8
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEE--ECCcEEEEEEEeCCCcccccccchhhhcCC--
Q 032487 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLA--VNDATVKFEIWDTAGQERYHSLAPMYYRGA-- 83 (139)
Q Consensus 8 ~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~-- 83 (139)
+..-+++++|..++|||||+.+|-+.+. +.+..|..+..-.+. ..+...++.+|-..|.-....+....+...
T Consensus 50 psgk~VlvlGdn~sGKtsLi~klqg~e~---~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~ 126 (473)
T KOG3905|consen 50 PSGKNVLVLGDNGSGKTSLISKLQGSET---VKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSL 126 (473)
T ss_pred CCCCeEEEEccCCCchhHHHHHhhcccc---cCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCc
Confidence 3455799999999999999999998763 233333334333332 233457889999999765555555444332
Q ss_pred --CEEEEEEECCCH-HHHHHHHHHHHHH
Q 032487 84 --AAAIIVYDITNQ-ASFERAKKWVQEL 108 (139)
Q Consensus 84 --~~~i~v~~~~~~-~s~~~~~~~~~~~ 108 (139)
..+|++.|++++ .-++.+++|...+
T Consensus 127 aetlviltasms~Pw~~lesLqkWa~Vl 154 (473)
T KOG3905|consen 127 AETLVILTASMSNPWTLLESLQKWASVL 154 (473)
T ss_pred cceEEEEEEecCCcHHHHHHHHHHHHHH
Confidence 478889999999 4467777777654
No 328
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.66 E-value=1.4e-07 Score=67.51 Aligned_cols=83 Identities=14% Similarity=-0.070 Sum_probs=55.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCC-CcccccceeeEEEEEEEEECCc---------------EEEEEEEeCCCccccc-
Q 032487 11 AKLVLLGDVGAGKSSLVLRFVKGQF-IEFQESTIGAAFFSQTLAVNDA---------------TVKFEIWDTAGQERYH- 73 (139)
Q Consensus 11 ~ki~i~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~d~~g~~~~~- 73 (139)
.++.|+|.|++|||||++.+.+... ....++..........+.+.+. ...+.+.|.||.....
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 7899999999999999999998876 4333333323333333443331 2468899999964321
Q ss_pred ---c---cchhhhcCCCEEEEEEECC
Q 032487 74 ---S---LAPMYYRGAAAAIIVYDIT 93 (139)
Q Consensus 74 ---~---~~~~~~~~~~~~i~v~~~~ 93 (139)
. ..-..++.+|+++.|+++.
T Consensus 83 ~g~Glgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 83 KGEGLGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred cccCcchHHHHHHHhCCEEEEEEeCC
Confidence 1 1223578899999999874
No 329
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=98.63 E-value=1.3e-07 Score=65.92 Aligned_cols=120 Identities=18% Similarity=0.152 Sum_probs=78.7
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcc---------cccccchhh
Q 032487 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQE---------RYHSLAPMY 79 (139)
Q Consensus 9 ~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~---------~~~~~~~~~ 79 (139)
...-|.++|..|+|||||+++|......+....+...+...+....... -.+.+.||.|.- .|... -..
T Consensus 177 s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg-~~vlltDTvGFisdLP~~LvaAF~AT-Lee 254 (410)
T KOG0410|consen 177 SSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSG-NFVLLTDTVGFISDLPIQLVAAFQAT-LEE 254 (410)
T ss_pred CCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCC-cEEEEeechhhhhhCcHHHHHHHHHH-HHH
Confidence 3456899999999999999999977766655444444443443333322 346677998842 12222 122
Q ss_pred hcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCe----EEEEEeCCCCcCC
Q 032487 80 YRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMV----MALAGNKADLLDA 130 (139)
Q Consensus 80 ~~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p----~ivv~~k~D~~~~ 130 (139)
...+|.++.|.|++.|..-......+.-+....-+..| ++=|-||+|....
T Consensus 255 VaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~ 309 (410)
T KOG0410|consen 255 VAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEED 309 (410)
T ss_pred HhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccc
Confidence 45689999999999998766666666666665333333 5677888887554
No 330
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.59 E-value=5.2e-07 Score=63.66 Aligned_cols=119 Identities=21% Similarity=0.193 Sum_probs=69.1
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHhCCC-------CcccccceeeEEEEEEEEE-------CCcEEEEEEEeCCCcccc
Q 032487 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQF-------IEFQESTIGAAFFSQTLAV-------NDATVKFEIWDTAGQERY 72 (139)
Q Consensus 7 ~~~~~ki~i~G~~~~GKssli~~l~~~~~-------~~~~~~~~~~~~~~~~~~~-------~~~~~~~~i~d~~g~~~~ 72 (139)
.+..+++-++|+-.+|||+|.+++..-.. +....+.+..+........ .+...++.++|+||+...
T Consensus 4 ~p~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasL 83 (522)
T KOG0461|consen 4 PPSNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASL 83 (522)
T ss_pred CCceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHH
Confidence 35569999999999999999999885321 1112222222211111111 334578999999998654
Q ss_pred cccchhhhcCCCEEEEEEECCCHHHHHHHHH-HHHHHHHhCCCCCeEEEEEeCCCCcCC
Q 032487 73 HSLAPMYYRGAAAAIIVYDITNQASFERAKK-WVQELQAQGNPNMVMALAGNKADLLDA 130 (139)
Q Consensus 73 ~~~~~~~~~~~~~~i~v~~~~~~~s~~~~~~-~~~~~~~~~~~~~p~ivv~~k~D~~~~ 130 (139)
-.......+-.|..++++|+.....-...+- .+..+.. ...++|.||+|+..+
T Consensus 84 IRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~c-----~klvvvinkid~lpE 137 (522)
T KOG0461|consen 84 IRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELLC-----KKLVVVINKIDVLPE 137 (522)
T ss_pred HHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhhc-----cceEEEEeccccccc
Confidence 4433333455789999999876433222221 1121221 226777888886443
No 331
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.57 E-value=9.1e-08 Score=60.99 Aligned_cols=59 Identities=25% Similarity=0.278 Sum_probs=33.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCcc------cccceeeEEEEEEEEECCcEEEEEEEeCCCcccc
Q 032487 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEF------QESTIGAAFFSQTLAVNDATVKFEIWDTAGQERY 72 (139)
Q Consensus 11 ~ki~i~G~~~~GKssli~~l~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~ 72 (139)
-.++++|++|||||||+|.|........ ....-.++.....+...+. ..++||||...+
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~g---~~iIDTPGf~~~ 100 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPDG---GYIIDTPGFRSF 100 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETTS---EEEECSHHHHT-
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCCC---cEEEECCCCCcc
Confidence 3589999999999999999998632211 1111122223333444332 368999996443
No 332
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=98.57 E-value=3.1e-07 Score=74.74 Aligned_cols=112 Identities=20% Similarity=0.210 Sum_probs=66.5
Q ss_pred EEEEcCCCCcHHHHHHHHHhCCCCccc------ccceeeEEEEEEEEECCcEEEEEEEeCCCccc--------ccccchh
Q 032487 13 LVLLGDVGAGKSSLVLRFVKGQFIEFQ------ESTIGAAFFSQTLAVNDATVKFEIWDTAGQER--------YHSLAPM 78 (139)
Q Consensus 13 i~i~G~~~~GKssli~~l~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~--------~~~~~~~ 78 (139)
.+|+|++|+||||+++.- +..++-.. ....+.+.. ....+.+ +-.++||+|.-. ....|..
T Consensus 114 YlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~-c~wwf~~---~avliDtaG~y~~~~~~~~~~~~~W~~ 188 (1169)
T TIGR03348 114 YLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRN-CDWWFTD---EAVLIDTAGRYTTQDSDPEEDAAAWLG 188 (1169)
T ss_pred EEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcc-cceEecC---CEEEEcCCCccccCCCcccccHHHHHH
Confidence 689999999999999876 33332110 011111111 1111222 346899998321 1223433
Q ss_pred hh---------cCCCEEEEEEECCCHH-----HH----HHHHHHHHHHHHhCCCCCeEEEEEeCCCCcC
Q 032487 79 YY---------RGAAAAIIVYDITNQA-----SF----ERAKKWVQELQAQGNPNMVMALAGNKADLLD 129 (139)
Q Consensus 79 ~~---------~~~~~~i~v~~~~~~~-----s~----~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~ 129 (139)
++ +..+++|+++|+.+-- .. ..++..+.++...-....|++++.||||+..
T Consensus 189 fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll~ 257 (1169)
T TIGR03348 189 FLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLLA 257 (1169)
T ss_pred HHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhhc
Confidence 32 3479999999987531 11 2345566666665567899999999999863
No 333
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.53 E-value=4.9e-07 Score=63.43 Aligned_cols=86 Identities=19% Similarity=0.095 Sum_probs=59.9
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECC---------------cEEEEEEEeCCCcccc
Q 032487 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVND---------------ATVKFEIWDTAGQERY 72 (139)
Q Consensus 8 ~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~i~d~~g~~~~ 72 (139)
...+++-|+|.|++|||||+|.|..........|...++.....+.+.. ....++++|++|.-..
T Consensus 18 ~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkG 97 (391)
T KOG1491|consen 18 GNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKG 97 (391)
T ss_pred CCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccC
Confidence 4578999999999999999999998877766666666555444443321 1457899999985322
Q ss_pred c----cc---chhhhcCCCEEEEEEECC
Q 032487 73 H----SL---APMYYRGAAAAIIVYDIT 93 (139)
Q Consensus 73 ~----~~---~~~~~~~~~~~i~v~~~~ 93 (139)
. .+ .-..++.+|+++-|+++-
T Consensus 98 As~G~GLGN~FLs~iR~vDaifhVVr~f 125 (391)
T KOG1491|consen 98 ASAGEGLGNKFLSHIRHVDAIFHVVRAF 125 (391)
T ss_pred cccCcCchHHHHHhhhhccceeEEEEec
Confidence 1 11 123467789998888654
No 334
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.53 E-value=4.1e-06 Score=53.12 Aligned_cols=113 Identities=19% Similarity=0.272 Sum_probs=66.8
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCC-Ccc----------------
Q 032487 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTA-GQE---------------- 70 (139)
Q Consensus 8 ~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~-g~~---------------- 70 (139)
+...||.+.|+||+||||++.++...--.. .....| +.+..+..++...-|.+.|+. |..
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e~L~~~-g~kvgG--f~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY 79 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAEKLREK-GYKVGG--FITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKY 79 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHHHHHHhc-Cceeee--EEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceE
Confidence 457899999999999999998877432111 122333 455556666767778888877 321
Q ss_pred -----ccccc----chhhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCC
Q 032487 71 -----RYHSL----APMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKAD 126 (139)
Q Consensus 71 -----~~~~~----~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D 126 (139)
.+..+ ...+++.+|+++ +|---+-.+. .+.+.+.+...-....|++.+.++.+
T Consensus 80 ~V~v~~le~i~~~al~rA~~~aDvII--IDEIGpMElk-s~~f~~~ve~vl~~~kpliatlHrrs 141 (179)
T COG1618 80 GVNVEGLEEIAIPALRRALEEADVII--IDEIGPMELK-SKKFREAVEEVLKSGKPLIATLHRRS 141 (179)
T ss_pred EeeHHHHHHHhHHHHHHHhhcCCEEE--Eecccchhhc-cHHHHHHHHHHhcCCCcEEEEEeccc
Confidence 11111 122344566655 4533332221 24555555555456788888888774
No 335
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=98.52 E-value=8.3e-07 Score=62.98 Aligned_cols=62 Identities=13% Similarity=0.022 Sum_probs=39.1
Q ss_pred EEEEEEEeCCCcccccccchhhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCC
Q 032487 58 TVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDA 130 (139)
Q Consensus 58 ~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~ 130 (139)
.+.+.++||+|..+-... ....+|.++++.+....+.+..++. .+.. ..-++|.||+|+...
T Consensus 148 g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k~---gi~E-----~aDIiVVNKaDl~~~ 209 (332)
T PRK09435 148 GYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIKK---GIME-----LADLIVINKADGDNK 209 (332)
T ss_pred CCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHHh---hhhh-----hhheEEeehhcccch
Confidence 478899999997533322 4567999999976444555433332 1111 123899999998653
No 336
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.52 E-value=3.8e-06 Score=56.70 Aligned_cols=94 Identities=17% Similarity=0.104 Sum_probs=54.2
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHhC--CCCcc---cccceeeEEEEEEEEECCcEEEEEEEeCCCccccccc------ch
Q 032487 9 INAKLVLLGDVGAGKSSLVLRFVKG--QFIEF---QESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSL------AP 77 (139)
Q Consensus 9 ~~~ki~i~G~~~~GKssli~~l~~~--~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~------~~ 77 (139)
.-.-|.|+|++++|||+|+|.|.+. .+... ...|.|.-........ +....+.++||+|....... ..
T Consensus 6 ~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~-~~~~~v~~lDteG~~~~~~~~~~~~~~~ 84 (224)
T cd01851 6 PVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKL-GKEHAVLLLDTEGTDGRERGEFEDDARL 84 (224)
T ss_pred CEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccC-CCcceEEEEecCCcCccccCchhhhhHH
Confidence 3455899999999999999999988 54421 1222232222211111 23467999999997544331 12
Q ss_pred hhhcC--CCEEEEEEECCC-HHHHHHHHH
Q 032487 78 MYYRG--AAAAIIVYDITN-QASFERAKK 103 (139)
Q Consensus 78 ~~~~~--~~~~i~v~~~~~-~~s~~~~~~ 103 (139)
..+.. ++.+++..+.+. ....+.+..
T Consensus 85 ~~l~~llss~~i~n~~~~~~~~~~~~l~~ 113 (224)
T cd01851 85 FALATLLSSVLIYNSWETILGDDLAALMG 113 (224)
T ss_pred HHHHHHHhCEEEEeccCcccHHHHHHHHH
Confidence 23333 677777666553 333443333
No 337
>PRK12288 GTPase RsgA; Reviewed
Probab=98.52 E-value=2.9e-07 Score=65.78 Aligned_cols=57 Identities=18% Similarity=0.237 Sum_probs=34.9
Q ss_pred EEEEcCCCCcHHHHHHHHHhCCCCccc------ccceeeEEEEEEEEECCcEEEEEEEeCCCcccc
Q 032487 13 LVLLGDVGAGKSSLVLRFVKGQFIEFQ------ESTIGAAFFSQTLAVNDATVKFEIWDTAGQERY 72 (139)
Q Consensus 13 i~i~G~~~~GKssli~~l~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~ 72 (139)
++++|.+|+|||||+|+|.+.....+. ...-.++.....+...+. ..++||||...+
T Consensus 208 ~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~---~~liDTPGir~~ 270 (347)
T PRK12288 208 SIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHG---GDLIDSPGVREF 270 (347)
T ss_pred EEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCC---CEEEECCCCCcc
Confidence 789999999999999999976432211 111112233333444322 248999996543
No 338
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.51 E-value=1.1e-06 Score=65.81 Aligned_cols=115 Identities=17% Similarity=0.178 Sum_probs=71.9
Q ss_pred CCCcceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCC
Q 032487 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAA 84 (139)
Q Consensus 5 ~~~~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~ 84 (139)
...+.++=++++|+||+|||||+++|...-....-....| +.+ -..++.-++++.++|. +..++. ....-+|
T Consensus 64 ~d~PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~G----PiT-vvsgK~RRiTflEcp~--Dl~~mi-DvaKIaD 135 (1077)
T COG5192 64 KDLPPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRG----PIT-VVSGKTRRITFLECPS--DLHQMI-DVAKIAD 135 (1077)
T ss_pred ccCCCCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCC----ceE-EeecceeEEEEEeChH--HHHHHH-hHHHhhh
Confidence 3456788888999999999999999886422111111111 111 1245567899999983 222221 2245689
Q ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCC
Q 032487 85 AAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDA 130 (139)
Q Consensus 85 ~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~ 130 (139)
.+++++|.+-.-..+.+ +++..+..++ -..++-|+|+.|+...
T Consensus 136 LVlLlIdgnfGfEMETm-EFLnil~~HG--mPrvlgV~ThlDlfk~ 178 (1077)
T COG5192 136 LVLLLIDGNFGFEMETM-EFLNILISHG--MPRVLGVVTHLDLFKN 178 (1077)
T ss_pred eeEEEeccccCceehHH-HHHHHHhhcC--CCceEEEEeecccccC
Confidence 99999999865443333 4455555542 2237778899998654
No 339
>PRK12289 GTPase RsgA; Reviewed
Probab=98.48 E-value=3.3e-07 Score=65.55 Aligned_cols=55 Identities=24% Similarity=0.341 Sum_probs=34.9
Q ss_pred EEEEcCCCCcHHHHHHHHHhCCCCccccccee-------eEEEEEEEEECCcEEEEEEEeCCCccc
Q 032487 13 LVLLGDVGAGKSSLVLRFVKGQFIEFQESTIG-------AAFFSQTLAVNDATVKFEIWDTAGQER 71 (139)
Q Consensus 13 i~i~G~~~~GKssli~~l~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~i~d~~g~~~ 71 (139)
++|+|++|+|||||+|.|.+...... ....+ ++.....+...+.. .++||||...
T Consensus 175 ~v~iG~SgVGKSSLIN~L~~~~~~~t-~~vs~~~~rGrHTT~~~~l~~l~~g~---~liDTPG~~~ 236 (352)
T PRK12289 175 TVVAGPSGVGKSSLINRLIPDVELRV-GKVSGKLGRGRHTTRHVELFELPNGG---LLADTPGFNQ 236 (352)
T ss_pred EEEEeCCCCCHHHHHHHHcCcccccc-ccccCCCCCCCCcCceeEEEECCCCc---EEEeCCCccc
Confidence 79999999999999999996543221 11111 23344444443322 6899999643
No 340
>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]
Probab=98.48 E-value=7.6e-07 Score=60.64 Aligned_cols=73 Identities=21% Similarity=0.255 Sum_probs=53.8
Q ss_pred EEEEEEEeCCCcccccccchhhhcCCCEEEEEEECCCH----------HHHHHHHHHHHHHHHhC-CCCCeEEEEEeCCC
Q 032487 58 TVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQ----------ASFERAKKWVQELQAQG-NPNMVMALAGNKAD 126 (139)
Q Consensus 58 ~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~~~~~~----------~s~~~~~~~~~~~~~~~-~~~~p~ivv~~k~D 126 (139)
+..|+.+|.+|+.+-+..|..+|++..++++|.+.+.- ..+.+.-.+++.+.+.. ...+.+|++.||.|
T Consensus 201 kv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~tisvIlFLNKqD 280 (379)
T KOG0099|consen 201 KVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTISVILFLNKQD 280 (379)
T ss_pred ccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhhheeEEecHHH
Confidence 36789999999999999999999999999999986631 12223334444444432 25678999999999
Q ss_pred CcCC
Q 032487 127 LLDA 130 (139)
Q Consensus 127 ~~~~ 130 (139)
+..+
T Consensus 281 llae 284 (379)
T KOG0099|consen 281 LLAE 284 (379)
T ss_pred HHHH
Confidence 8643
No 341
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.47 E-value=4.1e-07 Score=63.51 Aligned_cols=126 Identities=14% Similarity=0.145 Sum_probs=78.0
Q ss_pred CCCCCcceeEEEEEcCCCCcHHHHHHHHHhCC---CCcccccceeeE-------------------EEEE-EEEECC---
Q 032487 3 TTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQ---FIEFQESTIGAA-------------------FFSQ-TLAVND--- 56 (139)
Q Consensus 3 ~~~~~~~~~ki~i~G~~~~GKssli~~l~~~~---~~~~~~~~~~~~-------------------~~~~-~~~~~~--- 56 (139)
.....+..++|-++|+..-||||+...|.+-- +..+..+.+..- +... .+...+
T Consensus 3 ~~~~~Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~ 82 (415)
T COG5257 3 DPKHIQPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAET 82 (415)
T ss_pred ccccCCcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCc
Confidence 33344678999999999999999999998642 111111111100 0000 011111
Q ss_pred -cEEEEEEEeCCCcccccccchhhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCC
Q 032487 57 -ATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDA 130 (139)
Q Consensus 57 -~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~ 130 (139)
..-+++|.|.||++..-...-+-..-.|++++|++++.+.--.+.++.+-.+.-.. -..++++.||+|+...
T Consensus 83 ~l~R~VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIig--ik~iiIvQNKIDlV~~ 155 (415)
T COG5257 83 ELVRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIG--IKNIIIVQNKIDLVSR 155 (415)
T ss_pred cEEEEEEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhc--cceEEEEecccceecH
Confidence 12468899999997543322222334699999999998766555666666555432 3458999999999764
No 342
>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]
Probab=98.45 E-value=4.2e-08 Score=65.60 Aligned_cols=74 Identities=19% Similarity=0.251 Sum_probs=50.5
Q ss_pred cEEEEEEEeCCCcccccccchhhhcCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhCC-CCCeEEEEEeCC
Q 032487 57 ATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITN----------QASFERAKKWVQELQAQGN-PNMVMALAGNKA 125 (139)
Q Consensus 57 ~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~~~~~----------~~s~~~~~~~~~~~~~~~~-~~~p~ivv~~k~ 125 (139)
..+.|.+.|.+|+..-+..|..+|++...+++++..+. ....++.+.++.-+-..+. .+.++|++.||.
T Consensus 197 ~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF~nssVIlFLNKk 276 (359)
T KOG0085|consen 197 QKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKK 276 (359)
T ss_pred hhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccccCCceEEEechh
Confidence 34667899999998888899999988777666655442 2222333334443443332 578899999999
Q ss_pred CCcCC
Q 032487 126 DLLDA 130 (139)
Q Consensus 126 D~~~~ 130 (139)
|+.++
T Consensus 277 DlLEe 281 (359)
T KOG0085|consen 277 DLLEE 281 (359)
T ss_pred hhhhh
Confidence 98765
No 343
>PRK13796 GTPase YqeH; Provisional
Probab=98.43 E-value=5.3e-07 Score=64.95 Aligned_cols=56 Identities=21% Similarity=0.281 Sum_probs=37.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCC----cccccceeeEEEEEEEEECCcEEEEEEEeCCCc
Q 032487 11 AKLVLLGDVGAGKSSLVLRFVKGQFI----EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQ 69 (139)
Q Consensus 11 ~ki~i~G~~~~GKssli~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~ 69 (139)
.++.++|.+|+|||||+|+|...... ....+..|++.....+..++. ..++||||.
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~~---~~l~DTPGi 220 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDDG---SFLYDTPGI 220 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCCC---cEEEECCCc
Confidence 47999999999999999999964311 112334455555555555432 379999996
No 344
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.43 E-value=8.8e-07 Score=63.73 Aligned_cols=57 Identities=21% Similarity=0.282 Sum_probs=38.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCC----cccccceeeEEEEEEEEECCcEEEEEEEeCCCcc
Q 032487 11 AKLVLLGDVGAGKSSLVLRFVKGQFI----EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQE 70 (139)
Q Consensus 11 ~ki~i~G~~~~GKssli~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~ 70 (139)
.++.++|.+|+|||||+|+|.+.... .......|++.....+..++ .+.++||||..
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~~~---~~~l~DtPG~~ 215 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLDD---GHSLYDTPGII 215 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEeCC---CCEEEECCCCC
Confidence 48999999999999999999975321 11223334444444444422 25799999964
No 345
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.42 E-value=6e-07 Score=61.32 Aligned_cols=56 Identities=21% Similarity=0.132 Sum_probs=35.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCcc------cccceeeEEEEEEEEECCcEEEEEEEeCCCccc
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKGQFIEF------QESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~ 71 (139)
.++++|++|+|||||+|.|.+...... ....-.++.....+...+ -.++||||...
T Consensus 122 ~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l~~----~~liDtPG~~~ 183 (245)
T TIGR00157 122 ISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHFHG----GLIADTPGFNE 183 (245)
T ss_pred EEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEcCC----cEEEeCCCccc
Confidence 688999999999999999997543211 111111233333344432 26899999644
No 346
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.39 E-value=7.3e-07 Score=61.07 Aligned_cols=113 Identities=19% Similarity=0.242 Sum_probs=65.4
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHhCCCCcc-cccceeeEEEEEEEEECCcEEEEEEEeCCCc----------ccccccc
Q 032487 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEF-QESTIGAAFFSQTLAVNDATVKFEIWDTAGQ----------ERYHSLA 76 (139)
Q Consensus 8 ~~~~ki~i~G~~~~GKssli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~----------~~~~~~~ 76 (139)
..+..++++|-.++|||+|+|.+.+...... ..+..|.+.......++ -++.+.|.||- ..+..+.
T Consensus 134 ~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~---~~~~~vDlPG~~~a~y~~~~~~d~~~~t 210 (320)
T KOG2486|consen 134 DKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVG---KSWYEVDLPGYGRAGYGFELPADWDKFT 210 (320)
T ss_pred CCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeecc---ceEEEEecCCcccccCCccCcchHhHhH
Confidence 4578999999999999999999997654322 22234433333333332 46889999992 2223333
Q ss_pred hhhhcCCC---EEEEEEECCCHH--HHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcC
Q 032487 77 PMYYRGAA---AAIIVYDITNQA--SFERAKKWVQELQAQGNPNMVMALAGNKADLLD 129 (139)
Q Consensus 77 ~~~~~~~~---~~i~v~~~~~~~--s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~ 129 (139)
..++.+-+ -+++++|++-+- .-.....|+ ...++|.-+|.||||..-
T Consensus 211 ~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~------ge~~VP~t~vfTK~DK~k 262 (320)
T KOG2486|consen 211 KSYLLERENLVRVFLLVDASVPIQPTDNPEIAWL------GENNVPMTSVFTKCDKQK 262 (320)
T ss_pred HHHHHhhhhhheeeeeeeccCCCCCCChHHHHHH------hhcCCCeEEeeehhhhhh
Confidence 34443322 334445554321 101111222 245899999999999643
No 347
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.39 E-value=2.9e-06 Score=59.63 Aligned_cols=62 Identities=18% Similarity=0.005 Sum_probs=37.7
Q ss_pred EEEEEEEeCCCcccccccchhhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCC
Q 032487 58 TVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDA 130 (139)
Q Consensus 58 ~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~ 130 (139)
.+.+.++||+|..... ......+|.++++...... +.+..+...+ ...|.+++.||+|+...
T Consensus 126 g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~~~---~el~~~~~~l-----~~~~~ivv~NK~Dl~~~ 187 (300)
T TIGR00750 126 GYDVIIVETVGVGQSE---VDIANMADTFVVVTIPGTG---DDLQGIKAGL-----MEIADIYVVNKADGEGA 187 (300)
T ss_pred CCCEEEEeCCCCchhh---hHHHHhhceEEEEecCCcc---HHHHHHHHHH-----hhhccEEEEEcccccch
Confidence 4778899999854222 2245667888877543322 2333333323 24567999999998754
No 348
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=98.35 E-value=2.5e-07 Score=66.71 Aligned_cols=116 Identities=16% Similarity=0.173 Sum_probs=88.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCCC--------Cc--c------cccceeeEEEEEEEEECCcEEEEEEEeCCCccccc
Q 032487 10 NAKLVLLGDVGAGKSSLVLRFVKGQF--------IE--F------QESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYH 73 (139)
Q Consensus 10 ~~ki~i~G~~~~GKssli~~l~~~~~--------~~--~------~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~ 73 (139)
..+|-++..-.+||||.-++++.-.- .. + -.+.-|.+..+..+.++++..++.++||||+.+|+
T Consensus 37 irnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf~ 116 (753)
T KOG0464|consen 37 IRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDFR 116 (753)
T ss_pred hhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceEE
Confidence 45688999999999999998774211 00 0 01223556667778888888999999999999999
Q ss_pred ccchhhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcC
Q 032487 74 SLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLD 129 (139)
Q Consensus 74 ~~~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~ 129 (139)
.-...+++--|+++.|||++....-..+..| ++..+-++|-+.+.||.|...
T Consensus 117 leverclrvldgavav~dasagve~qtltvw----rqadk~~ip~~~finkmdk~~ 168 (753)
T KOG0464|consen 117 LEVERCLRVLDGAVAVFDASAGVEAQTLTVW----RQADKFKIPAHCFINKMDKLA 168 (753)
T ss_pred EEHHHHHHHhcCeEEEEeccCCcccceeeee----hhccccCCchhhhhhhhhhhh
Confidence 9889999999999999999876554445556 455556788888899999643
No 349
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.35 E-value=3.9e-06 Score=53.62 Aligned_cols=21 Identities=38% Similarity=0.572 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHHhC
Q 032487 13 LVLLGDVGAGKSSLVLRFVKG 33 (139)
Q Consensus 13 i~i~G~~~~GKssli~~l~~~ 33 (139)
++++|..|+|||||++.+...
T Consensus 3 ~~l~G~~GsGKTtl~~~l~~~ 23 (158)
T cd03112 3 TVLTGFLGAGKTTLLNHILTE 23 (158)
T ss_pred EEEEECCCCCHHHHHHHHHhc
Confidence 579999999999999998865
No 350
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=98.31 E-value=6e-07 Score=66.55 Aligned_cols=114 Identities=19% Similarity=0.393 Sum_probs=85.7
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEEEE
Q 032487 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAII 88 (139)
Q Consensus 9 ~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 88 (139)
..+|+-|+|..++|||+++.+++.+.+.+...+..| .+.+.+-.++.+..+.+.|-+|... ..+-...|++|+
T Consensus 29 pelk~givg~~~sgktalvhr~ltgty~~~e~~e~~--~~kkE~vv~gqs~lLlirdeg~~~~-----aQft~wvdavIf 101 (749)
T KOG0705|consen 29 PELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEGG--RFKKEVVVDGQSHLLLIRDEGGHPD-----AQFCQWVDAVVF 101 (749)
T ss_pred chhheeeeecccCCceeeeeeeccceeccccCCcCc--cceeeEEeeccceEeeeecccCCch-----hhhhhhccceEE
Confidence 468999999999999999999998887765544443 4455556677777788888887322 334567899999
Q ss_pred EEECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCCCCcC
Q 032487 89 VYDITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLD 129 (139)
Q Consensus 89 v~~~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~~k~D~~~ 129 (139)
+|...+..+|+.+..+.-.+.... ...+|+++++++.-...
T Consensus 102 vf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~ 143 (749)
T KOG0705|consen 102 VFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISA 143 (749)
T ss_pred EEEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhc
Confidence 999999999999887766665432 35788888888765443
No 351
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.30 E-value=1.5e-06 Score=60.39 Aligned_cols=59 Identities=24% Similarity=0.206 Sum_probs=37.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCC------CcccccceeeEEEEEEEEECCcEEEEEEEeCCCccccc
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKGQF------IEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYH 73 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~ 73 (139)
-.+++|++|+|||||+|+|..... .......-.++..+..+..++.. .+.||||...+.
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG---~iiDTPGf~~~~ 230 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGG---WIIDTPGFRSLG 230 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCC---EEEeCCCCCccC
Confidence 478899999999999999996321 11122222334445555553222 579999975443
No 352
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.30 E-value=1.5e-06 Score=62.08 Aligned_cols=120 Identities=18% Similarity=0.264 Sum_probs=78.9
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHhCCCCcc-----------------------cccceeeEEEEEEEEECCc-------
Q 032487 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEF-----------------------QESTIGAAFFSQTLAVNDA------- 57 (139)
Q Consensus 8 ~~~~ki~i~G~~~~GKssli~~l~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~------- 57 (139)
...++++++|.-.+|||||+--|.+++.... .....|++..-+.+.+...
T Consensus 165 fievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~ 244 (591)
T KOG1143|consen 165 FIEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIV 244 (591)
T ss_pred ceEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHH
Confidence 3478999999999999999987776543211 1112222221122222111
Q ss_pred ---EEEEEEEeCCCcccccccchhhhcC--CCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCCc
Q 032487 58 ---TVKFEIWDTAGQERYHSLAPMYYRG--AAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131 (139)
Q Consensus 58 ---~~~~~i~d~~g~~~~~~~~~~~~~~--~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~~ 131 (139)
+--++++|.+|+.+|.......+.+ +|.++++++++...... .++.+..+... ++|++++.+|.|+.+..
T Consensus 245 e~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~t-TrEHLgl~~AL---~iPfFvlvtK~Dl~~~~ 319 (591)
T KOG1143|consen 245 EKSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWT-TREHLGLIAAL---NIPFFVLVTKMDLVDRQ 319 (591)
T ss_pred hhhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccc-cHHHHHHHHHh---CCCeEEEEEeeccccch
Confidence 2347899999998887765554444 68899999988765543 35566666654 78999999999998763
No 353
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.28 E-value=4e-06 Score=60.69 Aligned_cols=114 Identities=17% Similarity=0.083 Sum_probs=76.5
Q ss_pred EEEEcCCCCcHHHHHHHHHhCCCC---cccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEEEEE
Q 032487 13 LVLLGDVGAGKSSLVLRFVKGQFI---EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIV 89 (139)
Q Consensus 13 i~i~G~~~~GKssli~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v 89 (139)
|.-.|+-.-|||||+..+.+.... .+....+. ........+.......++|.||++++-......+...|.+++|
T Consensus 3 i~t~GhidHgkT~L~~altg~~~d~l~EekKRG~T--iDlg~~y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alLv 80 (447)
T COG3276 3 IGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGIT--IDLGFYYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALLV 80 (447)
T ss_pred EEEeeeeeccchhhhhhhcccccccchhhhhcCce--EeeeeEeccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEEE
Confidence 567888899999999999976432 22223333 3333333343445899999999988877666677889999999
Q ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCCc
Q 032487 90 YDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131 (139)
Q Consensus 90 ~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~~ 131 (139)
+++++.-... ..+.+..+.... ....++|.||+|..+..
T Consensus 81 V~~deGl~~q-tgEhL~iLdllg--i~~giivltk~D~~d~~ 119 (447)
T COG3276 81 VAADEGLMAQ-TGEHLLILDLLG--IKNGIIVLTKADRVDEA 119 (447)
T ss_pred EeCccCcchh-hHHHHHHHHhcC--CCceEEEEeccccccHH
Confidence 9997643322 233444444432 23479999999998754
No 354
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.24 E-value=3.5e-06 Score=58.87 Aligned_cols=60 Identities=20% Similarity=0.247 Sum_probs=37.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCcccc------cceeeEEEEEEEEECCcEEEEEEEeCCCccccc
Q 032487 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQE------STIGAAFFSQTLAVNDATVKFEIWDTAGQERYH 73 (139)
Q Consensus 11 ~ki~i~G~~~~GKssli~~l~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~ 73 (139)
-.++++|++|+|||||+|.|.+........ ....++.....+...+. ..++|+||...+.
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~---~~liDtPG~~~~~ 227 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGG---GLLIDTPGFREFG 227 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCC---CEEEECCCCCccC
Confidence 468999999999999999999754332110 11112333333444322 2589999985543
No 355
>PRK00098 GTPase RsgA; Reviewed
Probab=98.23 E-value=3.4e-06 Score=59.26 Aligned_cols=56 Identities=21% Similarity=0.197 Sum_probs=34.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCcccccc----e--eeEEEEEEEEECCcEEEEEEEeCCCcc
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQEST----I--GAAFFSQTLAVNDATVKFEIWDTAGQE 70 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~~~~~~~~~~----~--~~~~~~~~~~~~~~~~~~~i~d~~g~~ 70 (139)
.++++|++|+|||||+|.|.+........-. . .++.....+...+. ..++||||..
T Consensus 166 ~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~~~---~~~~DtpG~~ 227 (298)
T PRK00098 166 VTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLPGG---GLLIDTPGFS 227 (298)
T ss_pred eEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcCCC---cEEEECCCcC
Confidence 5889999999999999999975432211000 1 12222333333322 3789999964
No 356
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=98.17 E-value=7.6e-06 Score=58.61 Aligned_cols=121 Identities=19% Similarity=0.252 Sum_probs=71.9
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHhC----------------CCC--cccccceeeEEEE-----E-------------
Q 032487 7 KNINAKLVLLGDVGAGKSSLVLRFVKG----------------QFI--EFQESTIGAAFFS-----Q------------- 50 (139)
Q Consensus 7 ~~~~~ki~i~G~~~~GKssli~~l~~~----------------~~~--~~~~~~~~~~~~~-----~------------- 50 (139)
+-..++++++|+..+|||||+-.|... +.. ...+++.|.+..- .
T Consensus 130 DF~E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~Ld 209 (641)
T KOG0463|consen 130 DFIEARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLD 209 (641)
T ss_pred cceeEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCccc
Confidence 456889999999999999998544432 222 1112222221110 0
Q ss_pred EEEEC-CcEEEEEEEeCCCcccccccchhhh--cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCC
Q 032487 51 TLAVN-DATVKFEIWDTAGQERYHSLAPMYY--RGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADL 127 (139)
Q Consensus 51 ~~~~~-~~~~~~~i~d~~g~~~~~~~~~~~~--~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~ 127 (139)
.+.+. +..-.++++|.+|+++|......-+ .-+|..++++-++-. .....++.+..... -.+|+++|.||+|+
T Consensus 210 WvkIce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaG-IiGmTKEHLgLALa---L~VPVfvVVTKIDM 285 (641)
T KOG0463|consen 210 WVKICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAG-IIGMTKEHLGLALA---LHVPVFVVVTKIDM 285 (641)
T ss_pred ceeeccccceeEEEEeccchhhhhheeeeccccCCCCceEEEeccccc-ceeccHHhhhhhhh---hcCcEEEEEEeecc
Confidence 01111 1123578999999998876544333 336888888876542 33334455444333 36899999999998
Q ss_pred cCCc
Q 032487 128 LDAR 131 (139)
Q Consensus 128 ~~~~ 131 (139)
..+.
T Consensus 286 CPAN 289 (641)
T KOG0463|consen 286 CPAN 289 (641)
T ss_pred CcHH
Confidence 7653
No 357
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=98.17 E-value=1.8e-05 Score=57.55 Aligned_cols=73 Identities=19% Similarity=0.245 Sum_probs=53.3
Q ss_pred cEEEEEEEeCCCcccccccchhhhcCCCEEEEEEECCCH----------HHHHHHHHHHHHHHHhC-CCCCeEEEEEeCC
Q 032487 57 ATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQ----------ASFERAKKWVQELQAQG-NPNMVMALAGNKA 125 (139)
Q Consensus 57 ~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~~~~~~----------~s~~~~~~~~~~~~~~~-~~~~p~ivv~~k~ 125 (139)
....+.++|++|+...+..|..+|.+++++++|+++++- ..+.....++..+.+.. -.+.|++|++||.
T Consensus 234 ~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~ 313 (389)
T PF00503_consen 234 GSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKI 313 (389)
T ss_dssp TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-H
T ss_pred cccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecH
Confidence 347899999999999999999999999999999997631 11222233444444322 2578999999999
Q ss_pred CCcC
Q 032487 126 DLLD 129 (139)
Q Consensus 126 D~~~ 129 (139)
|+..
T Consensus 314 D~f~ 317 (389)
T PF00503_consen 314 DLFE 317 (389)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9754
No 358
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=98.13 E-value=8.7e-06 Score=57.46 Aligned_cols=122 Identities=19% Similarity=0.216 Sum_probs=82.7
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHhC-------CCCc-------ccccceeeEEEEEEEEECCcEEEEEEEeCCCcccc
Q 032487 7 KNINAKLVLLGDVGAGKSSLVLRFVKG-------QFIE-------FQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERY 72 (139)
Q Consensus 7 ~~~~~ki~i~G~~~~GKssli~~l~~~-------~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~ 72 (139)
++..+++--+|+-.-|||||-..+..- ++.. -....-|++....++.+....-++.=.|+||+-+|
T Consensus 51 ~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHADY 130 (449)
T KOG0460|consen 51 DKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHADY 130 (449)
T ss_pred CCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHHH
Confidence 456789999999999999998876531 1100 01224456667777777655566777899999776
Q ss_pred cccchhhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCCc
Q 032487 73 HSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131 (139)
Q Consensus 73 ~~~~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~~ 131 (139)
-.-...-..+.|++|+|+++.|.- ..+.++.+-..++.. -..++++.||.|+.++.
T Consensus 131 IKNMItGaaqMDGaILVVaatDG~-MPQTrEHlLLArQVG--V~~ivvfiNKvD~V~d~ 186 (449)
T KOG0460|consen 131 IKNMITGAAQMDGAILVVAATDGP-MPQTREHLLLARQVG--VKHIVVFINKVDLVDDP 186 (449)
T ss_pred HHHhhcCccccCceEEEEEcCCCC-CcchHHHHHHHHHcC--CceEEEEEecccccCCH
Confidence 543333356789999999998842 233456655556553 23488889999998543
No 359
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=98.13 E-value=3.4e-05 Score=57.80 Aligned_cols=119 Identities=18% Similarity=0.240 Sum_probs=72.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCCCCccc-------cc-----------------------------------------
Q 032487 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQ-------ES----------------------------------------- 41 (139)
Q Consensus 10 ~~ki~i~G~~~~GKssli~~l~~~~~~~~~-------~~----------------------------------------- 41 (139)
-.+++++|+.++||||.++.+......+-. .|
T Consensus 308 LPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~LR~e~E~RM 387 (980)
T KOG0447|consen 308 LPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRHEIELRM 387 (980)
T ss_pred CceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcchhhhhccccccccccchhHHHHHHHHHHHHH
Confidence 458999999999999999998876533200 00
Q ss_pred ----ceeeEE--EEEEEEECCcE-EEEEEEeCCCc-------------ccccccchhhhcCCCEEEEEEECCCHHHHHHH
Q 032487 42 ----TIGAAF--FSQTLAVNDAT-VKFEIWDTAGQ-------------ERYHSLAPMYYRGAAAAIIVYDITNQASFERA 101 (139)
Q Consensus 42 ----~~~~~~--~~~~~~~~~~~-~~~~i~d~~g~-------------~~~~~~~~~~~~~~~~~i~v~~~~~~~s~~~~ 101 (139)
-.|.+. .+...++++.. .+..+.|.||. +....+...++.+++++|+|+--. |++.-
T Consensus 388 r~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDG---SVDAE 464 (980)
T KOG0447|consen 388 RKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDG---SVDAE 464 (980)
T ss_pred HhcccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccC---Ccchh
Confidence 001111 11122333322 35678999985 234455667899999999998421 22222
Q ss_pred HH-HHHHHHHhCCCCCeEEEEEeCCCCcCCc
Q 032487 102 KK-WVQELQAQGNPNMVMALAGNKADLLDAR 131 (139)
Q Consensus 102 ~~-~~~~~~~~~~~~~p~ivv~~k~D~~~~~ 131 (139)
+. .-..+....+.+...|+|.||.|+.+..
T Consensus 465 RSnVTDLVsq~DP~GrRTIfVLTKVDlAEkn 495 (980)
T KOG0447|consen 465 RSIVTDLVSQMDPHGRRTIFVLTKVDLAEKN 495 (980)
T ss_pred hhhHHHHHHhcCCCCCeeEEEEeecchhhhc
Confidence 22 2222333445577799999999998764
No 360
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=98.12 E-value=3.8e-06 Score=61.88 Aligned_cols=56 Identities=23% Similarity=0.226 Sum_probs=43.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCc
Q 032487 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQ 69 (139)
Q Consensus 10 ~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~ 69 (139)
.+.|-++|.||+||||.||.|.+.+... ...|.|-+.+..++.+.. .+.+.|+||.
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkVs-VS~TPGkTKHFQTi~ls~---~v~LCDCPGL 369 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKKVS-VSSTPGKTKHFQTIFLSP---SVCLCDCPGL 369 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCceee-eecCCCCcceeEEEEcCC---CceecCCCCc
Confidence 5889999999999999999999877554 455666666666665543 3788999996
No 361
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.06 E-value=1e-05 Score=65.43 Aligned_cols=115 Identities=22% Similarity=0.142 Sum_probs=63.6
Q ss_pred EEEEcCCCCcHHHHHHHHHhCCCC--cccccceeeEEEEEEEEECCcEEEEEEEeCCCcc--------cccccchhh---
Q 032487 13 LVLLGDVGAGKSSLVLRFVKGQFI--EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQE--------RYHSLAPMY--- 79 (139)
Q Consensus 13 i~i~G~~~~GKssli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~--------~~~~~~~~~--- 79 (139)
.+|+|++|+||||++..-- .+++ .......-....+..+. ....-+-.++||.|.. .....|..+
T Consensus 128 y~viG~pgsGKTtal~~sg-l~Fpl~~~~~~~~~~~~gT~~cd-wwf~deaVlIDtaGry~~q~s~~~~~~~~W~~fL~l 205 (1188)
T COG3523 128 YMVIGPPGSGKTTALLNSG-LQFPLAEQMGALGLAGPGTRNCD-WWFTDEAVLIDTAGRYITQDSADEVDRAEWLGFLGL 205 (1188)
T ss_pred eEEecCCCCCcchHHhccc-ccCcchhhhccccccCCCCcccC-cccccceEEEcCCcceecccCcchhhHHHHHHHHHH
Confidence 5899999999999874322 1111 11100000000112221 2223356788999842 112233322
Q ss_pred ------hcCCCEEEEEEECCCHHH---------HHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcC
Q 032487 80 ------YRGAAAAIIVYDITNQAS---------FERAKKWVQELQAQGNPNMVMALAGNKADLLD 129 (139)
Q Consensus 80 ------~~~~~~~i~v~~~~~~~s---------~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~ 129 (139)
.+..+++++++|+.+..+ ...++.-+.++...-....|+++++||.|+..
T Consensus 206 Lkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~ 270 (1188)
T COG3523 206 LKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLP 270 (1188)
T ss_pred HHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEecccccc
Confidence 244789999999875311 22244445555554457899999999999864
No 362
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.06 E-value=2.6e-05 Score=57.14 Aligned_cols=113 Identities=15% Similarity=0.112 Sum_probs=60.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHh------CCCC----ccc-----------ccceeeEEEEEEEEEC-------------
Q 032487 10 NAKLVLLGDVGAGKSSLVLRFVK------GQFI----EFQ-----------ESTIGAAFFSQTLAVN------------- 55 (139)
Q Consensus 10 ~~ki~i~G~~~~GKssli~~l~~------~~~~----~~~-----------~~~~~~~~~~~~~~~~------------- 55 (139)
+.-|+++|++|+||||++..|.. .+.. ..+ ..-.+..++......+
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~ 179 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFK 179 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHH
Confidence 56799999999999999988762 1110 000 1111222221110001
Q ss_pred CcEEEEEEEeCCCcccccccchh------hhcCCCEEEEEEECCCHH-HHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCc
Q 032487 56 DATVKFEIWDTAGQERYHSLAPM------YYRGAAAAIIVYDITNQA-SFERAKKWVQELQAQGNPNMVMALAGNKADLL 128 (139)
Q Consensus 56 ~~~~~~~i~d~~g~~~~~~~~~~------~~~~~~~~i~v~~~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~ 128 (139)
...+.+.++||+|......-.-. ....++-+++|+|+.-.. ..+.++.+ .. .-.+--+|.||.|..
T Consensus 180 ~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a~~F----~~---~~~~~g~IlTKlD~~ 252 (429)
T TIGR01425 180 KENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQAKAF----KD---SVDVGSVIITKLDGH 252 (429)
T ss_pred hCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHHHHH----Hh---ccCCcEEEEECccCC
Confidence 12478999999996433211111 123578899999986532 22222222 21 123467778999974
Q ss_pred C
Q 032487 129 D 129 (139)
Q Consensus 129 ~ 129 (139)
.
T Consensus 253 a 253 (429)
T TIGR01425 253 A 253 (429)
T ss_pred C
Confidence 3
No 363
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.98 E-value=2.9e-05 Score=50.14 Aligned_cols=52 Identities=21% Similarity=0.422 Sum_probs=32.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeC
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDT 66 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~ 66 (139)
+|++.|++|+||||++++++..-... ..+..| +.+..+..++...-|.+.|.
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l~~~-~~~v~G--f~t~evr~~g~r~GF~iv~l 52 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEELKKK-GLPVGG--FYTEEVRENGRRIGFDIVDL 52 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHHHHT-CGGEEE--EEEEEEETTSSEEEEEEEET
T ss_pred CEEEECcCCCCHHHHHHHHHHHhhcc-CCccce--EEeecccCCCceEEEEEEEC
Confidence 68999999999999999988532111 223344 34444444555555666666
No 364
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=97.97 E-value=2.3e-05 Score=56.26 Aligned_cols=120 Identities=16% Similarity=0.185 Sum_probs=76.7
Q ss_pred CCcceeEEEEEcCCCCcHHHHHHHHHhCCCCc----------------ccccceeeEEEEEEEEECCc------------
Q 032487 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIE----------------FQESTIGAAFFSQTLAVNDA------------ 57 (139)
Q Consensus 6 ~~~~~~ki~i~G~~~~GKssli~~l~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~------------ 57 (139)
..+..+.+...|+-..||||++-.|.-+.... ..-.+....+ ..+.+++.
T Consensus 113 ~~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~--~v~Gf~dgk~~rlknPld~a 190 (527)
T COG5258 113 EAPEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISL--RVYGFDDGKVVRLKNPLDEA 190 (527)
T ss_pred CCCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeE--EEEEecCCceEeecCcccHH
Confidence 35678889999999999999987766443221 1111222212 22222111
Q ss_pred ---------EEEEEEEeCCCcccccccch--hhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCC
Q 032487 58 ---------TVKFEIWDTAGQERYHSLAP--MYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKAD 126 (139)
Q Consensus 58 ---------~~~~~i~d~~g~~~~~~~~~--~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D 126 (139)
.--+.+.|+.|++.|-.... ..-++.|..++++.+++.-+-. .++.+-.+.. -.+|+|++.||+|
T Consensus 191 E~~~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~-tkEHLgi~~a---~~lPviVvvTK~D 266 (527)
T COG5258 191 EKAAVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKM-TKEHLGIALA---MELPVIVVVTKID 266 (527)
T ss_pred HHhHhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchh-hhHhhhhhhh---hcCCEEEEEEecc
Confidence 12467899999998876433 3445689999999999865532 3444444443 3689999999999
Q ss_pred CcCCc
Q 032487 127 LLDAR 131 (139)
Q Consensus 127 ~~~~~ 131 (139)
+.++.
T Consensus 267 ~~~dd 271 (527)
T COG5258 267 MVPDD 271 (527)
T ss_pred cCcHH
Confidence 87653
No 365
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=97.95 E-value=0.00011 Score=43.69 Aligned_cols=99 Identities=14% Similarity=0.115 Sum_probs=58.5
Q ss_pred cCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEEEEEEECCCHH
Q 032487 17 GDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQA 96 (139)
Q Consensus 17 G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~~~~~~~ 96 (139)
+.+|+|||+....|...-.......+.-.+ .... ....+.++|+|+.... .....+..+|.++++.+.+ ..
T Consensus 7 ~kgg~gkt~~~~~la~~~~~~~~~~~~l~d-----~d~~-~~~D~IIiDtpp~~~~--~~~~~l~~aD~vlvvv~~~-~~ 77 (106)
T cd03111 7 AKGGVGATTLAANLAVALAKEAGRRVLLVD-----LDLQ-FGDDYVVVDLGRSLDE--VSLAALDQADRVFLVTQQD-LP 77 (106)
T ss_pred CCCCCcHHHHHHHHHHHHHhcCCCcEEEEE-----CCCC-CCCCEEEEeCCCCcCH--HHHHHHHHcCeEEEEecCC-hH
Confidence 477899999876665321111011111111 1111 1127899999975432 2345678899999888754 55
Q ss_pred HHHHHHHHHHHHHHhCCC-CCeEEEEEeC
Q 032487 97 SFERAKKWVQELQAQGNP-NMVMALAGNK 124 (139)
Q Consensus 97 s~~~~~~~~~~~~~~~~~-~~p~ivv~~k 124 (139)
++..+..+++.+...... ...+.+|+|+
T Consensus 78 s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 78 SIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred HHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 666777777777765433 4567777775
No 366
>KOG2484 consensus GTPase [General function prediction only]
Probab=97.93 E-value=1.2e-05 Score=57.67 Aligned_cols=59 Identities=17% Similarity=0.266 Sum_probs=45.4
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCc
Q 032487 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQ 69 (139)
Q Consensus 7 ~~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~ 69 (139)
-+..+++-|+|.|++||||+||+|.....+. .....|.+...+.+..+. .+.+.|.||.
T Consensus 249 lk~sIrvGViG~PNVGKSSvINsL~~~k~C~-vg~~pGvT~smqeV~Ldk---~i~llDsPgi 307 (435)
T KOG2484|consen 249 LKTSIRVGIIGYPNVGKSSVINSLKRRKACN-VGNVPGVTRSMQEVKLDK---KIRLLDSPGI 307 (435)
T ss_pred cCcceEeeeecCCCCChhHHHHHHHHhcccc-CCCCccchhhhhheeccC---CceeccCCce
Confidence 3678999999999999999999999887765 334555555566665543 4788999985
No 367
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.93 E-value=0.00025 Score=46.22 Aligned_cols=102 Identities=13% Similarity=0.110 Sum_probs=51.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEE--EEEeCC-CcccccccchhhhcCCCEEEE
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKF--EIWDTA-GQERYHSLAPMYYRGAAAAII 88 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~d~~-g~~~~~~~~~~~~~~~~~~i~ 88 (139)
.++++|+.|+|||||++.+.+...+. .|. +.+++..+.+ +-.+.. |+.+--.+....+.+++++++
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~Gl~~p~-----~G~------i~~~g~~i~~~~q~~~LSgGq~qrv~laral~~~p~lllL 95 (177)
T cd03222 27 VIGIVGPNGTGKTTAVKILAGQLIPN-----GDN------DEWDGITPVYKPQYIDLSGGELQRVAIAAALLRNATFYLF 95 (177)
T ss_pred EEEEECCCCChHHHHHHHHHcCCCCC-----CcE------EEECCEEEEEEcccCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 68899999999999999998754321 121 1122211111 111122 333333445555666666554
Q ss_pred E--EECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCC
Q 032487 89 V--YDITNQASFERAKKWVQELQAQGNPNMVMALAGNKAD 126 (139)
Q Consensus 89 v--~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D 126 (139)
= .+.-|+.+...+..++..+... ....++++-+..+
T Consensus 96 DEPts~LD~~~~~~l~~~l~~~~~~--~~~tiiivsH~~~ 133 (177)
T cd03222 96 DEPSAYLDIEQRLNAARAIRRLSEE--GKKTALVVEHDLA 133 (177)
T ss_pred ECCcccCCHHHHHHHHHHHHHHHHc--CCCEEEEEECCHH
Confidence 1 1122445555555666655432 1244555544433
No 368
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=97.92 E-value=0.00013 Score=43.00 Aligned_cols=82 Identities=11% Similarity=0.161 Sum_probs=49.6
Q ss_pred EEEEc-CCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEEEEEEE
Q 032487 13 LVLLG-DVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYD 91 (139)
Q Consensus 13 i~i~G-~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~~ 91 (139)
|.+.| .+|+||||+...+...-... ..+.. .+..+ ..+.+.++|+|+..... ....+..+|.++++.+
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~~-~~~vl-------~~d~d-~~~d~viiD~p~~~~~~--~~~~l~~ad~viv~~~ 70 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALARR-GKRVL-------LIDLD-PQYDYIIIDTPPSLGLL--TRNALAAADLVLIPVQ 70 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHhC-CCcEE-------EEeCC-CCCCEEEEeCcCCCCHH--HHHHHHHCCEEEEecc
Confidence 45666 67999999987766421111 11111 11122 12778999999864322 2356788999999987
Q ss_pred CCCHHHHHHHHHHHH
Q 032487 92 ITNQASFERAKKWVQ 106 (139)
Q Consensus 92 ~~~~~s~~~~~~~~~ 106 (139)
.+ ..++..+.++++
T Consensus 71 ~~-~~s~~~~~~~~~ 84 (104)
T cd02042 71 PS-PLDLDGLEKLLE 84 (104)
T ss_pred CC-HHHHHHHHHHHH
Confidence 64 556666666655
No 369
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=97.90 E-value=7.4e-05 Score=51.15 Aligned_cols=87 Identities=16% Similarity=0.140 Sum_probs=58.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccc--------cccchhhhcC
Q 032487 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERY--------HSLAPMYYRG 82 (139)
Q Consensus 11 ~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~--------~~~~~~~~~~ 82 (139)
.++-++|-|++||||++..+.+...+.........+.......+++ -++++.|.||.-+. ++. ..-.+-
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~g--aKiqlldlpgiiegakdgkgrg~qv-iavart 136 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKG--AKIQLLDLPGIIEGAKDGKGRGKQV-IAVART 136 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEeccc--cceeeecCcchhcccccCCCCccEE-EEEeec
Confidence 4788999999999999999998754433333333334444444555 56899999985211 111 223467
Q ss_pred CCEEEEEEECCCHHHHHH
Q 032487 83 AAAAIIVYDITNQASFER 100 (139)
Q Consensus 83 ~~~~i~v~~~~~~~s~~~ 100 (139)
|+.+++|+|+.-+-+...
T Consensus 137 cnli~~vld~~kp~~hk~ 154 (358)
T KOG1487|consen 137 CNLIFIVLDVLKPLSHKK 154 (358)
T ss_pred ccEEEEEeeccCcccHHH
Confidence 899999999987665544
No 370
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.87 E-value=0.00015 Score=46.77 Aligned_cols=67 Identities=15% Similarity=0.069 Sum_probs=37.6
Q ss_pred EEEEEEEeCCCcccccccc----hhh--hcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCC
Q 032487 58 TVKFEIWDTAGQERYHSLA----PMY--YRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDA 130 (139)
Q Consensus 58 ~~~~~i~d~~g~~~~~~~~----~~~--~~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~ 130 (139)
...+.++|++|......-. ... ....+.+++|++...... ...+...+.... + ..-+|.||.|....
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~---~~~~~~~~~~~~--~-~~~viltk~D~~~~ 154 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQD---AVNQAKAFNEAL--G-ITGVILTKLDGDAR 154 (173)
T ss_pred CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChH---HHHHHHHHHhhC--C-CCEEEEECCcCCCC
Confidence 3567889999974321110 111 234899999999865432 122333333221 1 25666799997654
No 371
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=97.87 E-value=0.00032 Score=53.72 Aligned_cols=119 Identities=17% Similarity=0.275 Sum_probs=69.3
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHhCCCCccccc-c-------------------------------------------e
Q 032487 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQES-T-------------------------------------------I 43 (139)
Q Consensus 8 ~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~-~-------------------------------------------~ 43 (139)
....|+++.|..++||||++|+++..+.-+.... + .
T Consensus 107 r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~ 186 (749)
T KOG0448|consen 107 RRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDL 186 (749)
T ss_pred hcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCccccc
Confidence 3467999999999999999999997654321100 0 0
Q ss_pred eeEEEEEEEEECC-c---EEEEEEEeCCCccc---ccccchhhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCC
Q 032487 44 GAAFFSQTLAVND-A---TVKFEIWDTAGQER---YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNM 116 (139)
Q Consensus 44 ~~~~~~~~~~~~~-~---~~~~~i~d~~g~~~---~~~~~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~ 116 (139)
+.....+.+.-++ . .-.+.+.|.||.+. ...-...+...+|++++|.++.+.-+.. .+.++...... +.
T Consensus 187 ~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~s-ek~Ff~~vs~~---Kp 262 (749)
T KOG0448|consen 187 GAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLS-EKQFFHKVSEE---KP 262 (749)
T ss_pred CcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHH-HHHHHHHhhcc---CC
Confidence 0000111111111 0 11467888888642 2223345677899999999987754433 23444444433 33
Q ss_pred eEEEEEeCCCCcCC
Q 032487 117 VMALAGNKADLLDA 130 (139)
Q Consensus 117 p~ivv~~k~D~~~~ 130 (139)
-++++-||.|....
T Consensus 263 niFIlnnkwDasas 276 (749)
T KOG0448|consen 263 NIFILNNKWDASAS 276 (749)
T ss_pred cEEEEechhhhhcc
Confidence 46666788797654
No 372
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.87 E-value=7e-05 Score=52.00 Aligned_cols=65 Identities=18% Similarity=0.191 Sum_probs=37.7
Q ss_pred EEEEEEEeCCCcccccccch------------hhhcCCCEEEEEEECCCH-HHHHHHHHHHHHHHHhCCCCCeEEEEEeC
Q 032487 58 TVKFEIWDTAGQERYHSLAP------------MYYRGAAAAIIVYDITNQ-ASFERAKKWVQELQAQGNPNMVMALAGNK 124 (139)
Q Consensus 58 ~~~~~i~d~~g~~~~~~~~~------------~~~~~~~~~i~v~~~~~~-~s~~~~~~~~~~~~~~~~~~~p~ivv~~k 124 (139)
.+.+.++||+|........- ..-..+|..++|+|+... +.+..+..+.+.+ .+.-+|.||
T Consensus 154 ~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~f~~~~-------~~~g~IlTK 226 (272)
T TIGR00064 154 NIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQAKVFNEAV-------GLTGIILTK 226 (272)
T ss_pred CCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHHHHHHhhC-------CCCEEEEEc
Confidence 47889999999653222111 011238899999998753 3333333332211 135677899
Q ss_pred CCCcC
Q 032487 125 ADLLD 129 (139)
Q Consensus 125 ~D~~~ 129 (139)
.|...
T Consensus 227 lDe~~ 231 (272)
T TIGR00064 227 LDGTA 231 (272)
T ss_pred cCCCC
Confidence 99754
No 373
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.86 E-value=1.7e-05 Score=59.64 Aligned_cols=119 Identities=20% Similarity=0.183 Sum_probs=81.8
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHhCCCC-----cc-----------cccceeeEEEEEEEEECCcEEEEEEEeCCCccc
Q 032487 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFI-----EF-----------QESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71 (139)
Q Consensus 8 ~~~~ki~i~G~~~~GKssli~~l~~~~~~-----~~-----------~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~ 71 (139)
.+.-+|-+..+-.+||||+-++++.-.-. .. -.+--|++..+......+..+++.++||||+-+
T Consensus 37 ~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvD 116 (721)
T KOG0465|consen 37 NKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVD 116 (721)
T ss_pred hhhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCcee
Confidence 34556888888999999999987642100 00 011223344444445555578999999999998
Q ss_pred ccccchhhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCC
Q 032487 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDA 130 (139)
Q Consensus 72 ~~~~~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~ 130 (139)
|.---...++--|++++++++-....-.....|. .+.++ ++|.+.+.||.|....
T Consensus 117 FT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~r-Q~~ry---~vP~i~FiNKmDRmGa 171 (721)
T KOG0465|consen 117 FTFEVERALRVLDGAVLVLDAVAGVESQTETVWR-QMKRY---NVPRICFINKMDRMGA 171 (721)
T ss_pred EEEEehhhhhhccCeEEEEEcccceehhhHHHHH-HHHhc---CCCeEEEEehhhhcCC
Confidence 8887788889999999999987665444444553 33333 6899999999997544
No 374
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.84 E-value=0.00015 Score=51.49 Aligned_cols=24 Identities=17% Similarity=0.348 Sum_probs=20.3
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHh
Q 032487 9 INAKLVLLGDVGAGKSSLVLRFVK 32 (139)
Q Consensus 9 ~~~ki~i~G~~~~GKssli~~l~~ 32 (139)
...-++++|++|+||||++..+..
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~ 136 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAH 136 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 345789999999999999988764
No 375
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.83 E-value=3.5e-05 Score=53.89 Aligned_cols=50 Identities=18% Similarity=0.227 Sum_probs=41.6
Q ss_pred hhhcCCCEEEEEEECCCHH-HHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCC
Q 032487 78 MYYRGAAAAIIVYDITNQA-SFERAKKWVQELQAQGNPNMVMALAGNKADLLDA 130 (139)
Q Consensus 78 ~~~~~~~~~i~v~~~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~ 130 (139)
..+.++|.+++|+|+.++. ++..+.+|+..+.. .+.|+++|+||+|+.+.
T Consensus 74 ~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~---~~ip~iIVlNK~DL~~~ 124 (287)
T cd01854 74 VIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA---AGIEPVIVLTKADLLDD 124 (287)
T ss_pred eEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH---cCCCEEEEEEHHHCCCh
Confidence 3478899999999999987 77888888887764 36889999999999654
No 376
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.83 E-value=2e-05 Score=47.75 Aligned_cols=22 Identities=27% Similarity=0.530 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKG 33 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~ 33 (139)
.|+|.|++||||||+.+.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999864
No 377
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.82 E-value=0.00028 Score=43.46 Aligned_cols=25 Identities=28% Similarity=0.457 Sum_probs=21.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCC
Q 032487 10 NAKLVLLGDVGAGKSSLVLRFVKGQ 34 (139)
Q Consensus 10 ~~ki~i~G~~~~GKssli~~l~~~~ 34 (139)
...+++.|++|+|||++++.+...-
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 3468999999999999999998753
No 378
>PRK08118 topology modulation protein; Reviewed
Probab=97.81 E-value=2.2e-05 Score=50.61 Aligned_cols=22 Identities=36% Similarity=0.653 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKG 33 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~ 33 (139)
+|+|+|++|||||||.+.|...
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~ 24 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999998864
No 379
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.78 E-value=0.00049 Score=43.23 Aligned_cols=23 Identities=35% Similarity=0.489 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKGQ 34 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~~ 34 (139)
.++++|++|+|||||++.+.+..
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 28 RIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 47899999999999999998754
No 380
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.78 E-value=2.3e-05 Score=48.82 Aligned_cols=21 Identities=43% Similarity=0.710 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHHhC
Q 032487 13 LVLLGDVGAGKSSLVLRFVKG 33 (139)
Q Consensus 13 i~i~G~~~~GKssli~~l~~~ 33 (139)
|+++|++||||||+++.+...
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~ 22 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKR 22 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999843
No 381
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.77 E-value=0.00032 Score=50.77 Aligned_cols=23 Identities=22% Similarity=0.514 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHh
Q 032487 10 NAKLVLLGDVGAGKSSLVLRFVK 32 (139)
Q Consensus 10 ~~ki~i~G~~~~GKssli~~l~~ 32 (139)
.-.++++|++|+||||++..|..
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~ 159 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAA 159 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999998875
No 382
>PRK07261 topology modulation protein; Provisional
Probab=97.76 E-value=2.8e-05 Score=50.29 Aligned_cols=22 Identities=32% Similarity=0.628 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKG 33 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~ 33 (139)
+|+|+|++|+|||||.+.|...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 7999999999999999998754
No 383
>PRK13695 putative NTPase; Provisional
Probab=97.75 E-value=0.00042 Score=44.83 Aligned_cols=22 Identities=36% Similarity=0.659 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 032487 11 AKLVLLGDVGAGKSSLVLRFVK 32 (139)
Q Consensus 11 ~ki~i~G~~~~GKssli~~l~~ 32 (139)
.++++.|.+|+|||||+..+.+
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~ 22 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAE 22 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999998654
No 384
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=97.75 E-value=0.00063 Score=39.04 Aligned_cols=69 Identities=20% Similarity=0.233 Sum_probs=43.5
Q ss_pred EEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCccccccc-chhhhcCCCEEEEEEE
Q 032487 13 LVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSL-APMYYRGAAAAIIVYD 91 (139)
Q Consensus 13 i~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~-~~~~~~~~~~~i~v~~ 91 (139)
+++.|.+|+|||++...+...-... ..+. .-.+ .+.++|+++....... .......+|.++++++
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~-g~~v---------~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~ 67 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKR-GKRV---------LLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTT 67 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC-CCeE---------EEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecC
Confidence 6788999999999998877532111 1111 1112 6889999976432221 1345667888998888
Q ss_pred CCCH
Q 032487 92 ITNQ 95 (139)
Q Consensus 92 ~~~~ 95 (139)
.+..
T Consensus 68 ~~~~ 71 (99)
T cd01983 68 PEAL 71 (99)
T ss_pred Cchh
Confidence 6653
No 385
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.73 E-value=3.3e-05 Score=50.30 Aligned_cols=22 Identities=41% Similarity=0.751 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKG 33 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~ 33 (139)
+|+|+|+||+||||+...|...
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999999876
No 386
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=97.71 E-value=0.00023 Score=37.33 Aligned_cols=43 Identities=26% Similarity=0.280 Sum_probs=28.9
Q ss_pred CCEEEEEEECCC--HHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCC
Q 032487 83 AAAAIIVYDITN--QASFERAKKWVQELQAQGNPNMVMALAGNKAD 126 (139)
Q Consensus 83 ~~~~i~v~~~~~--~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D 126 (139)
.+++++++|.+. +.+++.-..+++.++... .+.|+++|.||+|
T Consensus 14 ~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F-~~~P~i~V~nK~D 58 (58)
T PF06858_consen 14 ADAILFIIDPSEQCGYSIEEQLSLFKEIKPLF-PNKPVIVVLNKID 58 (58)
T ss_dssp -SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHT-TTS-EEEEE--TT
T ss_pred cceEEEEEcCCCCCCCCHHHHHHHHHHHHHHc-CCCCEEEEEeccC
Confidence 578999999886 456776667888888763 5899999999998
No 387
>PRK12289 GTPase RsgA; Reviewed
Probab=97.71 E-value=0.00011 Score=52.87 Aligned_cols=53 Identities=17% Similarity=0.268 Sum_probs=40.3
Q ss_pred cchhhhcCCCEEEEEEECCCHH-HHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCC
Q 032487 75 LAPMYYRGAAAAIIVYDITNQA-SFERAKKWVQELQAQGNPNMVMALAGNKADLLDA 130 (139)
Q Consensus 75 ~~~~~~~~~~~~i~v~~~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~ 130 (139)
+....+.++|.+++|+|+.++. ....+.+|+..+.. .+.|+++|+||+|+.+.
T Consensus 82 L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~---~~ip~ILVlNK~DLv~~ 135 (352)
T PRK12289 82 LDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAES---TGLEIVLCLNKADLVSP 135 (352)
T ss_pred eechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEchhcCCh
Confidence 3344578999999999998775 44456777776643 46899999999999653
No 388
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.70 E-value=0.00035 Score=43.61 Aligned_cols=107 Identities=16% Similarity=0.120 Sum_probs=62.0
Q ss_pred EEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEEEEEEECC
Q 032487 14 VLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDIT 93 (139)
Q Consensus 14 ~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~~~~ 93 (139)
+.-|.+|+|||++.-.+...-... ..++.-.+... ......+.+.++|+|+.. .......+..+|.++++.+.+
T Consensus 4 ~~~~kgg~gkt~~~~~~a~~~~~~-~~~~~~vd~D~---~~~~~~yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~~~ 77 (139)
T cd02038 4 VTSGKGGVGKTNISANLALALAKL-GKRVLLLDADL---GLANLDYDYIIIDTGAGI--SDNVLDFFLAADEVIVVTTPE 77 (139)
T ss_pred EEcCCCCCcHHHHHHHHHHHHHHC-CCcEEEEECCC---CCCCCCCCEEEEECCCCC--CHHHHHHHHhCCeEEEEcCCC
Confidence 345689999999976655321100 11111111100 011122778999999743 223345688899999998865
Q ss_pred CHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCc
Q 032487 94 NQASFERAKKWVQELQAQGNPNMVMALAGNKADLL 128 (139)
Q Consensus 94 ~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~ 128 (139)
..++......++.+.... ...++.+|.|+.+..
T Consensus 78 -~~s~~~~~~~l~~l~~~~-~~~~~~lVvN~~~~~ 110 (139)
T cd02038 78 -PTSITDAYALIKKLAKQL-RVLNFRVVVNRAESP 110 (139)
T ss_pred -hhHHHHHHHHHHHHHHhc-CCCCEEEEEeCCCCH
Confidence 445555555555555432 345678899999754
No 389
>KOG4273 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.70 E-value=0.00022 Score=48.64 Aligned_cols=116 Identities=16% Similarity=0.242 Sum_probs=68.9
Q ss_pred eeEEEEEcCCCC--cHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEE--EEEEEeCCCcccccccchhhhcCCCE
Q 032487 10 NAKLVLLGDVGA--GKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATV--KFEIWDTAGQERYHSLAPMYYRGAAA 85 (139)
Q Consensus 10 ~~ki~i~G~~~~--GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~d~~g~~~~~~~~~~~~~~~~~ 85 (139)
+...+++|-.|+ ||.+++.+|....+.........+.++..+ ++++.| .+.+.-.+--+.+............+
T Consensus 4 rp~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hgwt--id~kyysadi~lcishicde~~lpn~~~a~pl~a 81 (418)
T KOG4273|consen 4 RPCALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHGWT--IDNKYYSADINLCISHICDEKFLPNAEIAEPLQA 81 (418)
T ss_pred CceEEEecccccccchHHHHHHhcchhheeeccccCceeeeceE--ecceeeecceeEEeecccchhccCCcccccceee
Confidence 346789999998 999999999988776654444444333333 333222 12222111111122222222344568
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcC
Q 032487 86 AIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLD 129 (139)
Q Consensus 86 ~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~ 129 (139)
++++||.+....+..++.|+..-.-.. ---.+.++||.|...
T Consensus 82 ~vmvfdlse~s~l~alqdwl~htdins--fdillcignkvdrvp 123 (418)
T KOG4273|consen 82 FVMVFDLSEKSGLDALQDWLPHTDINS--FDILLCIGNKVDRVP 123 (418)
T ss_pred EEEEEeccchhhhHHHHhhcccccccc--chhheeccccccccc
Confidence 899999999999999999976422111 112567799999643
No 390
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=97.67 E-value=4.6e-05 Score=47.65 Aligned_cols=49 Identities=27% Similarity=0.352 Sum_probs=35.2
Q ss_pred hhhcCCCEEEEEEECCCHHHHH--HHHHHHHHHHHhCCCCCeEEEEEeCCCCcCC
Q 032487 78 MYYRGAAAAIIVYDITNQASFE--RAKKWVQELQAQGNPNMVMALAGNKADLLDA 130 (139)
Q Consensus 78 ~~~~~~~~~i~v~~~~~~~s~~--~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~ 130 (139)
..+..+|++++|+|+.++.+.. .+.+|+... ..+.|+++|+||+|+.++
T Consensus 7 ~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~----~~~k~~iivlNK~DL~~~ 57 (141)
T cd01857 7 RVVERSDIVVQIVDARNPLLFRPPDLERYVKEV----DPRKKNILLLNKADLLTE 57 (141)
T ss_pred HHHhhCCEEEEEEEccCCcccCCHHHHHHHHhc----cCCCcEEEEEechhcCCH
Confidence 4578899999999998875533 344444322 246799999999998654
No 391
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=97.66 E-value=3.7e-05 Score=49.99 Aligned_cols=24 Identities=38% Similarity=0.565 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCC
Q 032487 11 AKLVLLGDVGAGKSSLVLRFVKGQ 34 (139)
Q Consensus 11 ~ki~i~G~~~~GKssli~~l~~~~ 34 (139)
.=+++.||+|+||||+++.|....
T Consensus 5 ~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 5 LLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhc
Confidence 347899999999999999999765
No 392
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.65 E-value=6.2e-05 Score=50.15 Aligned_cols=26 Identities=27% Similarity=0.371 Sum_probs=22.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCc
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKGQFIE 37 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~~~~~ 37 (139)
.++|+|++|||||||++.+.+-+...
T Consensus 30 vv~iiGpSGSGKSTlLRclN~LE~~~ 55 (240)
T COG1126 30 VVVIIGPSGSGKSTLLRCLNGLEEPD 55 (240)
T ss_pred EEEEECCCCCCHHHHHHHHHCCcCCC
Confidence 58999999999999999999866443
No 393
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.64 E-value=0.00017 Score=49.87 Aligned_cols=62 Identities=23% Similarity=0.288 Sum_probs=43.1
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEE--EEE--ECCcEEEEEEEeCCCc
Q 032487 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQ--TLA--VNDATVKFEIWDTAGQ 69 (139)
Q Consensus 8 ~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~i~d~~g~ 69 (139)
...++|+-+|..|.|||||+..|.+..+.....+-.-.....+ ++. -.+...++++.||.|-
T Consensus 40 GF~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGf 105 (406)
T KOG3859|consen 40 GFCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGF 105 (406)
T ss_pred CceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeeccc
Confidence 4578999999999999999999999887654322221111122 222 2456788999999984
No 394
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=97.64 E-value=2.5e-05 Score=56.33 Aligned_cols=60 Identities=15% Similarity=0.159 Sum_probs=41.8
Q ss_pred CCcceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCc
Q 032487 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQ 69 (139)
Q Consensus 6 ~~~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~ 69 (139)
.+++.+.+-++|.|++||||+||.|...+.+. ..|..|.+- .+.+=--.-++.++|+||.
T Consensus 303 ~dkkqISVGfiGYPNvGKSSiINTLR~KkVCk-vAPIpGETK---VWQYItLmkrIfLIDcPGv 362 (572)
T KOG2423|consen 303 SDKKQISVGFIGYPNVGKSSIINTLRKKKVCK-VAPIPGETK---VWQYITLMKRIFLIDCPGV 362 (572)
T ss_pred cCccceeeeeecCCCCchHHHHHHHhhccccc-ccCCCCcch---HHHHHHHHhceeEecCCCc
Confidence 45678899999999999999999999988876 344444321 1111001135788999996
No 395
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.62 E-value=6.7e-05 Score=50.89 Aligned_cols=23 Identities=30% Similarity=0.430 Sum_probs=20.5
Q ss_pred EEEEcCCCCcHHHHHHHHHhCCC
Q 032487 13 LVLLGDVGAGKSSLVLRFVKGQF 35 (139)
Q Consensus 13 i~i~G~~~~GKssli~~l~~~~~ 35 (139)
++++|++|||||||++-+.+-..
T Consensus 32 vsilGpSGcGKSTLLriiAGL~~ 54 (248)
T COG1116 32 VAILGPSGCGKSTLLRLIAGLEK 54 (248)
T ss_pred EEEECCCCCCHHHHHHHHhCCCC
Confidence 78999999999999999987643
No 396
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.61 E-value=6.7e-05 Score=45.86 Aligned_cols=21 Identities=29% Similarity=0.504 Sum_probs=19.3
Q ss_pred EEEEcCCCCcHHHHHHHHHhC
Q 032487 13 LVLLGDVGAGKSSLVLRFVKG 33 (139)
Q Consensus 13 i~i~G~~~~GKssli~~l~~~ 33 (139)
|++.|++|+|||++++.+...
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 689999999999999999865
No 397
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.61 E-value=0.0003 Score=52.96 Aligned_cols=23 Identities=26% Similarity=0.616 Sum_probs=19.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHh
Q 032487 10 NAKLVLLGDVGAGKSSLVLRFVK 32 (139)
Q Consensus 10 ~~ki~i~G~~~~GKssli~~l~~ 32 (139)
.-.++|+|+.|+||||++..|..
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa 372 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQ 372 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999988764
No 398
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.60 E-value=5e-05 Score=48.61 Aligned_cols=22 Identities=23% Similarity=0.508 Sum_probs=17.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKG 33 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~ 33 (139)
||+|+|.+++|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 7999999999999999999865
No 399
>PRK14738 gmk guanylate kinase; Provisional
Probab=97.60 E-value=7.6e-05 Score=49.72 Aligned_cols=28 Identities=21% Similarity=0.351 Sum_probs=22.8
Q ss_pred CCcceeEEEEEcCCCCcHHHHHHHHHhC
Q 032487 6 NKNINAKLVLLGDVGAGKSSLVLRFVKG 33 (139)
Q Consensus 6 ~~~~~~ki~i~G~~~~GKssli~~l~~~ 33 (139)
......-|+|+|++||||||+++.|...
T Consensus 9 ~~~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 9 KPAKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 3445566889999999999999999754
No 400
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=97.60 E-value=0.00019 Score=50.22 Aligned_cols=62 Identities=18% Similarity=0.179 Sum_probs=38.8
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHhCCCCcc----cccceeeEEEEEE-EEECCcEEEEEEEeCCCc
Q 032487 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEF----QESTIGAAFFSQT-LAVNDATVKFEIWDTAGQ 69 (139)
Q Consensus 7 ~~~~~ki~i~G~~~~GKssli~~l~~~~~~~~----~~~~~~~~~~~~~-~~~~~~~~~~~i~d~~g~ 69 (139)
.+..++++++|.||+|||||+|.+........ ...-.|.+..+.. +.+... -.+.+.||||.
T Consensus 140 ~~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~r-p~vy~iDTPGi 206 (335)
T KOG2485|consen 140 LNSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHR-PPVYLIDTPGI 206 (335)
T ss_pred cCCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccC-CceEEecCCCc
Confidence 35678999999999999999998775432211 1222233332222 444332 23788999995
No 401
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.58 E-value=9.1e-05 Score=40.60 Aligned_cols=21 Identities=24% Similarity=0.574 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHHhC
Q 032487 13 LVLLGDVGAGKSSLVLRFVKG 33 (139)
Q Consensus 13 i~i~G~~~~GKssli~~l~~~ 33 (139)
|++.|++|+|||++.+.+...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 688999999999999998864
No 402
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=97.58 E-value=0.0011 Score=48.60 Aligned_cols=23 Identities=30% Similarity=0.518 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 032487 11 AKLVLLGDVGAGKSSLVLRFVKG 33 (139)
Q Consensus 11 ~ki~i~G~~~~GKssli~~l~~~ 33 (139)
+=|-++||..+|||||+.+|...
T Consensus 18 IYiGVVGPVRTGKSTFIKRFMel 40 (492)
T PF09547_consen 18 IYIGVVGPVRTGKSTFIKRFMEL 40 (492)
T ss_pred eEEEeecCcccCchhHHHHHHHH
Confidence 45789999999999999998854
No 403
>PRK14737 gmk guanylate kinase; Provisional
Probab=97.57 E-value=6e-05 Score=49.45 Aligned_cols=22 Identities=18% Similarity=0.453 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKG 33 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~ 33 (139)
=|+|+|++|+||+|++++|...
T Consensus 6 ~ivl~GpsG~GK~tl~~~l~~~ 27 (186)
T PRK14737 6 LFIISSVAGGGKSTIIQALLEE 27 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 3899999999999999999865
No 404
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.57 E-value=0.0001 Score=39.48 Aligned_cols=21 Identities=29% Similarity=0.414 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 032487 12 KLVLLGDVGAGKSSLVLRFVK 32 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~ 32 (139)
-.+|.|+.|+||||++..+..
T Consensus 25 ~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 389999999999999988764
No 405
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.55 E-value=0.00048 Score=42.70 Aligned_cols=23 Identities=43% Similarity=0.811 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 032487 11 AKLVLLGDVGAGKSSLVLRFVKG 33 (139)
Q Consensus 11 ~ki~i~G~~~~GKssli~~l~~~ 33 (139)
--|++.|+.|+|||||++.+...
T Consensus 23 ~~i~l~G~lGaGKTtl~~~l~~~ 45 (133)
T TIGR00150 23 TVVLLKGDLGAGKTTLVQGLLQG 45 (133)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 35889999999999999999865
No 406
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.53 E-value=0.00011 Score=44.96 Aligned_cols=26 Identities=19% Similarity=0.360 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCC
Q 032487 11 AKLVLLGDVGAGKSSLVLRFVKGQFI 36 (139)
Q Consensus 11 ~ki~i~G~~~~GKssli~~l~~~~~~ 36 (139)
-.++++|++|+|||++++.+...-..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~ 28 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGP 28 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCC
Confidence 46899999999999999999876543
No 407
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.53 E-value=0.00097 Score=49.29 Aligned_cols=25 Identities=24% Similarity=0.537 Sum_probs=21.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCC
Q 032487 10 NAKLVLLGDVGAGKSSLVLRFVKGQ 34 (139)
Q Consensus 10 ~~ki~i~G~~~~GKssli~~l~~~~ 34 (139)
.-+|+|+|+.|+|||||+..|++.-
T Consensus 613 dSRiaIVGPNGVGKSTlLkLL~Gkl 637 (807)
T KOG0066|consen 613 DSRIAIVGPNGVGKSTLLKLLIGKL 637 (807)
T ss_pred cceeEEECCCCccHHHHHHHHhcCC
Confidence 4589999999999999999988753
No 408
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.52 E-value=8.7e-05 Score=45.92 Aligned_cols=23 Identities=26% Similarity=0.398 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKGQ 34 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~~ 34 (139)
.++|+|++|+|||||++.+.+..
T Consensus 13 ~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEEccCCCccccceeeecccc
Confidence 58999999999999999988764
No 409
>PRK06217 hypothetical protein; Validated
Probab=97.51 E-value=0.00011 Score=47.99 Aligned_cols=23 Identities=17% Similarity=0.410 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 032487 11 AKLVLLGDVGAGKSSLVLRFVKG 33 (139)
Q Consensus 11 ~ki~i~G~~~~GKssli~~l~~~ 33 (139)
.+|+|+|.+||||||+.+.|...
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999864
No 410
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=97.51 E-value=0.0001 Score=48.37 Aligned_cols=53 Identities=26% Similarity=0.245 Sum_probs=37.4
Q ss_pred ccccchhhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCC
Q 032487 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDA 130 (139)
Q Consensus 72 ~~~~~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~ 130 (139)
+...+..+++++|++++|+|+.++.. .|...+... ..+.|+++|+||+|+...
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~-----~~~~~l~~~-~~~~~~ilV~NK~Dl~~~ 76 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPG-----SLIPRLRLF-GGNNPVILVGNKIDLLPK 76 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCC-----ccchhHHHh-cCCCcEEEEEEchhcCCC
Confidence 46667778899999999999987532 122222222 246799999999998643
No 411
>PRK00098 GTPase RsgA; Reviewed
Probab=97.51 E-value=0.0002 Score=50.45 Aligned_cols=47 Identities=19% Similarity=0.233 Sum_probs=37.2
Q ss_pred hcCCCEEEEEEECCCHHHHHH-HHHHHHHHHHhCCCCCeEEEEEeCCCCcC
Q 032487 80 YRGAAAAIIVYDITNQASFER-AKKWVQELQAQGNPNMVMALAGNKADLLD 129 (139)
Q Consensus 80 ~~~~~~~i~v~~~~~~~s~~~-~~~~~~~~~~~~~~~~p~ivv~~k~D~~~ 129 (139)
..++|.+++|+|+.++.+... +.+|+..+.. .++|+++|+||+|+.+
T Consensus 78 aaniD~vllV~d~~~p~~~~~~idr~L~~~~~---~~ip~iIVlNK~DL~~ 125 (298)
T PRK00098 78 AANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA---NGIKPIIVLNKIDLLD 125 (298)
T ss_pred eecCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEhHHcCC
Confidence 588999999999988765443 5777776653 4689999999999963
No 412
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.48 E-value=0.00015 Score=45.26 Aligned_cols=21 Identities=43% Similarity=0.727 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHHhC
Q 032487 13 LVLLGDVGAGKSSLVLRFVKG 33 (139)
Q Consensus 13 i~i~G~~~~GKssli~~l~~~ 33 (139)
|+|+|++|+||||+++.|...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 689999999999999999864
No 413
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=97.48 E-value=0.00071 Score=48.10 Aligned_cols=21 Identities=33% Similarity=0.570 Sum_probs=18.6
Q ss_pred EEEEcCCCCcHHHHHHHHHhC
Q 032487 13 LVLLGDVGAGKSSLVLRFVKG 33 (139)
Q Consensus 13 i~i~G~~~~GKssli~~l~~~ 33 (139)
.++.|.-|+|||||+|+++..
T Consensus 7 ~iltGFLGaGKTTll~~ll~~ 27 (318)
T PRK11537 7 TLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_pred EEEEECCCCCHHHHHHHHHhc
Confidence 567899999999999999864
No 414
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=97.46 E-value=0.00011 Score=50.42 Aligned_cols=21 Identities=33% Similarity=0.401 Sum_probs=19.3
Q ss_pred EEEEcCCCCcHHHHHHHHHhC
Q 032487 13 LVLLGDVGAGKSSLVLRFVKG 33 (139)
Q Consensus 13 i~i~G~~~~GKssli~~l~~~ 33 (139)
++|+|+.|||||||++.+.+-
T Consensus 31 ~~iiGpNG~GKSTLLk~l~g~ 51 (258)
T COG1120 31 TGILGPNGSGKSTLLKCLAGL 51 (258)
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 689999999999999999874
No 415
>PRK03839 putative kinase; Provisional
Probab=97.45 E-value=0.00014 Score=47.27 Aligned_cols=22 Identities=18% Similarity=0.385 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKG 33 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~ 33 (139)
+|+++|++||||||+.+.|...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999988764
No 416
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.45 E-value=0.00011 Score=49.00 Aligned_cols=21 Identities=33% Similarity=0.501 Sum_probs=18.7
Q ss_pred EEEEcCCCCcHHHHHHHHHhC
Q 032487 13 LVLLGDVGAGKSSLVLRFVKG 33 (139)
Q Consensus 13 i~i~G~~~~GKssli~~l~~~ 33 (139)
.+++||+|||||||++.+.+-
T Consensus 36 TAlIGPSGcGKST~LR~lNRm 56 (253)
T COG1117 36 TALIGPSGCGKSTLLRCLNRM 56 (253)
T ss_pred EEEECCCCcCHHHHHHHHHhh
Confidence 589999999999999988763
No 417
>PRK12288 GTPase RsgA; Reviewed
Probab=97.44 E-value=0.00038 Score=50.01 Aligned_cols=48 Identities=19% Similarity=0.227 Sum_probs=39.7
Q ss_pred hcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCC
Q 032487 80 YRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDA 130 (139)
Q Consensus 80 ~~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~ 130 (139)
..++|.+++|++.+...++..+..|+..+.. .++|+++|+||+|+.+.
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~---~~i~~VIVlNK~DL~~~ 165 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVACET---LGIEPLIVLNKIDLLDD 165 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHHHh---cCCCEEEEEECccCCCc
Confidence 3568999999999888889999999876543 46889999999999654
No 418
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=97.44 E-value=0.00016 Score=47.95 Aligned_cols=24 Identities=29% Similarity=0.549 Sum_probs=21.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhC
Q 032487 10 NAKLVLLGDVGAGKSSLVLRFVKG 33 (139)
Q Consensus 10 ~~ki~i~G~~~~GKssli~~l~~~ 33 (139)
++++.++|++|+||||+++++.+.
T Consensus 1 ~~~i~i~G~~GsGKTTll~~l~~~ 24 (199)
T TIGR00101 1 PLKIGVAGPVGSGKTALIEALTRA 24 (199)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 368999999999999999988864
No 419
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=97.43 E-value=0.00015 Score=47.10 Aligned_cols=22 Identities=27% Similarity=0.353 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKG 33 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~ 33 (139)
-++|+|++||||||+++.|...
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998764
No 420
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=97.43 E-value=0.0016 Score=44.01 Aligned_cols=46 Identities=22% Similarity=0.187 Sum_probs=30.7
Q ss_pred hcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCc
Q 032487 80 YRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLL 128 (139)
Q Consensus 80 ~~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~ 128 (139)
.+++|.+++|+|.+. .++...++..+...... -.++.+|.||.|-.
T Consensus 153 ~~~vD~vivVvDpS~-~sl~taeri~~L~~elg--~k~i~~V~NKv~e~ 198 (255)
T COG3640 153 IEGVDLVIVVVDPSY-KSLRTAERIKELAEELG--IKRIFVVLNKVDEE 198 (255)
T ss_pred ccCCCEEEEEeCCcH-HHHHHHHHHHHHHHHhC--CceEEEEEeeccch
Confidence 467999999999764 34444444433333332 36799999999965
No 421
>PRK14530 adenylate kinase; Provisional
Probab=97.42 E-value=0.00016 Score=48.37 Aligned_cols=22 Identities=32% Similarity=0.602 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 032487 11 AKLVLLGDVGAGKSSLVLRFVK 32 (139)
Q Consensus 11 ~ki~i~G~~~~GKssli~~l~~ 32 (139)
.+|+|+|+|||||||+.+.|..
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~ 25 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAE 25 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999998874
No 422
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.42 E-value=0.00084 Score=48.77 Aligned_cols=24 Identities=21% Similarity=0.491 Sum_probs=20.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhC
Q 032487 10 NAKLVLLGDVGAGKSSLVLRFVKG 33 (139)
Q Consensus 10 ~~ki~i~G~~~~GKssli~~l~~~ 33 (139)
.--++++||.|+||||-+..|...
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar 226 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAAR 226 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHH
Confidence 456899999999999999877643
No 423
>PRK13949 shikimate kinase; Provisional
Probab=97.42 E-value=0.00017 Score=46.62 Aligned_cols=22 Identities=32% Similarity=0.616 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKG 33 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~ 33 (139)
+|+|+|++|+||||+.+.+...
T Consensus 3 ~I~liG~~GsGKstl~~~La~~ 24 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARE 24 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999988753
No 424
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.42 E-value=0.00019 Score=48.39 Aligned_cols=24 Identities=25% Similarity=0.289 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCC
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKGQF 35 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~~~ 35 (139)
-++|+|++|||||||+|-+.+-.-
T Consensus 33 ~vaI~GpSGSGKSTLLniig~ld~ 56 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGGLDK 56 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhcccC
Confidence 378999999999999999887543
No 425
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=97.42 E-value=0.00018 Score=51.29 Aligned_cols=23 Identities=39% Similarity=0.494 Sum_probs=20.8
Q ss_pred EEEEcCCCCcHHHHHHHHHhCCC
Q 032487 13 LVLLGDVGAGKSSLVLRFVKGQF 35 (139)
Q Consensus 13 i~i~G~~~~GKssli~~l~~~~~ 35 (139)
++++||+||||||+++.+.+-..
T Consensus 32 ~vllGPSGcGKSTlLr~IAGLe~ 54 (338)
T COG3839 32 VVLLGPSGCGKSTLLRMIAGLEE 54 (338)
T ss_pred EEEECCCCCCHHHHHHHHhCCCC
Confidence 78999999999999999998654
No 426
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.42 E-value=0.00017 Score=44.87 Aligned_cols=22 Identities=27% Similarity=0.493 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKG 33 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~ 33 (139)
.++++|++|+|||++++.+...
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~ 22 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAAL 22 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 3799999999999999988854
No 427
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.41 E-value=0.00015 Score=47.44 Aligned_cols=22 Identities=32% Similarity=0.524 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKG 33 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~ 33 (139)
.++|+|++||||||+++.|.+.
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5899999999999999999764
No 428
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.40 E-value=0.00016 Score=43.93 Aligned_cols=21 Identities=19% Similarity=0.401 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHHhC
Q 032487 13 LVLLGDVGAGKSSLVLRFVKG 33 (139)
Q Consensus 13 i~i~G~~~~GKssli~~l~~~ 33 (139)
|+|.|.+||||||+++.|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999988865
No 429
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.40 E-value=0.00018 Score=48.96 Aligned_cols=26 Identities=23% Similarity=0.480 Sum_probs=23.1
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHhC
Q 032487 8 NINAKLVLLGDVGAGKSSLVLRFVKG 33 (139)
Q Consensus 8 ~~~~ki~i~G~~~~GKssli~~l~~~ 33 (139)
+.+++++|+|++|||||+|+-.++..
T Consensus 11 ~~~fr~viIG~sGSGKT~li~~lL~~ 36 (241)
T PF04665_consen 11 KDPFRMVIIGKSGSGKTTLIKSLLYY 36 (241)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHh
Confidence 56789999999999999999988864
No 430
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=97.40 E-value=0.00029 Score=44.76 Aligned_cols=50 Identities=22% Similarity=0.282 Sum_probs=33.6
Q ss_pred hhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCC
Q 032487 79 YYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDA 130 (139)
Q Consensus 79 ~~~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~ 130 (139)
.+..+|++++|+|+.++..- ....+.+.+... ..+.|+++|.||+|+.++
T Consensus 5 ~l~~aD~il~VvD~~~p~~~-~~~~i~~~l~~~-~~~~p~ilVlNKiDl~~~ 54 (157)
T cd01858 5 VIDSSDVVIQVLDARDPMGT-RCKHVEEYLKKE-KPHKHLIFVLNKCDLVPT 54 (157)
T ss_pred hhhhCCEEEEEEECCCCccc-cCHHHHHHHHhc-cCCCCEEEEEEchhcCCH
Confidence 46889999999999886321 112233333332 345899999999999654
No 431
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=97.39 E-value=0.00015 Score=45.95 Aligned_cols=52 Identities=17% Similarity=0.165 Sum_probs=34.5
Q ss_pred ccchhhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcC
Q 032487 74 SLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLD 129 (139)
Q Consensus 74 ~~~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~ 129 (139)
......++++|++++|+|+.++..... ..+...+. ..+.|+++|+||+|+.+
T Consensus 4 ~~~~~i~~~aD~vl~V~D~~~~~~~~~-~~l~~~~~---~~~~p~iiv~NK~Dl~~ 55 (156)
T cd01859 4 RLVRRIIKESDVVLEVLDARDPELTRS-RKLERYVL---ELGKKLLIVLNKADLVP 55 (156)
T ss_pred HHHHHHHhhCCEEEEEeeCCCCcccCC-HHHHHHHH---hCCCcEEEEEEhHHhCC
Confidence 345566778999999999987543221 12222222 23579999999999854
No 432
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.38 E-value=0.00024 Score=47.26 Aligned_cols=26 Identities=15% Similarity=0.272 Sum_probs=22.1
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHhC
Q 032487 8 NINAKLVLLGDVGAGKSSLVLRFVKG 33 (139)
Q Consensus 8 ~~~~ki~i~G~~~~GKssli~~l~~~ 33 (139)
+...-|.|.|++|||||||++.+.+.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHH
Confidence 45566899999999999999998853
No 433
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=97.34 E-value=0.0002 Score=46.42 Aligned_cols=22 Identities=36% Similarity=0.588 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKG 33 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~ 33 (139)
-|+++|++||||||+++.|...
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHcc
Confidence 4899999999999999999874
No 434
>PRK01889 GTPase RsgA; Reviewed
Probab=97.33 E-value=0.00039 Score=50.18 Aligned_cols=59 Identities=20% Similarity=0.297 Sum_probs=0.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCccccccee------eEEEEEEEEECCcEEEEEEEeCCCccccc
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIG------AAFFSQTLAVNDATVKFEIWDTAGQERYH 73 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~i~d~~g~~~~~ 73 (139)
+++++|.+|+|||||+|.+.+........-... .+.......+.+..+ ++|+||...+.
T Consensus 197 ~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~tt~~~~l~~l~~~~~---l~DtpG~~~~~ 261 (356)
T PRK01889 197 TVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRHTTTHRELHPLPSGGL---LIDTPGMRELQ 261 (356)
T ss_pred EEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcchhhhccEEEecCCCe---ecCCCchhhhc
No 435
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=97.33 E-value=0.00023 Score=44.63 Aligned_cols=22 Identities=18% Similarity=0.507 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKG 33 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~ 33 (139)
.|.|+|+.++|||||++.|++.
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998864
No 436
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.33 E-value=0.00025 Score=48.03 Aligned_cols=25 Identities=32% Similarity=0.424 Sum_probs=21.5
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHhC
Q 032487 9 INAKLVLLGDVGAGKSSLVLRFVKG 33 (139)
Q Consensus 9 ~~~ki~i~G~~~~GKssli~~l~~~ 33 (139)
...+|+|+|+|||||||+.+.|...
T Consensus 5 ~~mrIvl~G~PGsGK~T~a~~La~~ 29 (229)
T PTZ00088 5 GPLKIVLFGAPGVGKGTFAEILSKK 29 (229)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999988753
No 437
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.32 E-value=0.00094 Score=46.81 Aligned_cols=104 Identities=13% Similarity=0.261 Sum_probs=60.3
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcc----------------
Q 032487 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQE---------------- 70 (139)
Q Consensus 7 ~~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~---------------- 70 (139)
..+..+++|+|++|.|||+++++|...-... ... . .....+.....|...
T Consensus 58 ~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~-~d~-~------------~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP 123 (302)
T PF05621_consen 58 RHRMPNLLIVGDSNNGKTMIIERFRRLHPPQ-SDE-D------------AERIPVVYVQMPPEPDERRFYSAILEALGAP 123 (302)
T ss_pred ccCCCceEEecCCCCcHHHHHHHHHHHCCCC-CCC-C------------CccccEEEEecCCCCChHHHHHHHHHHhCcc
Confidence 3456789999999999999999999743221 111 0 011233334444211
Q ss_pred --------cccccchhhhcCCCEEEEEEECCC---HHHHHHHHHHHHHHHHhC-CCCCeEEEEEeC
Q 032487 71 --------RYHSLAPMYYRGAAAAIIVYDITN---QASFERAKKWVQELQAQG-NPNMVMALAGNK 124 (139)
Q Consensus 71 --------~~~~~~~~~~~~~~~~i~v~~~~~---~~s~~~~~~~~~~~~~~~-~~~~p~ivv~~k 124 (139)
..+......++...+=++++|--. ..+...-+.+++.++..+ .-.+|++.+|++
T Consensus 124 ~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~ 189 (302)
T PF05621_consen 124 YRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTR 189 (302)
T ss_pred cCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccH
Confidence 111111234666778888887432 234444556666666643 357899999875
No 438
>PRK14532 adenylate kinase; Provisional
Probab=97.30 E-value=0.00027 Score=46.24 Aligned_cols=21 Identities=38% Similarity=0.640 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 032487 12 KLVLLGDVGAGKSSLVLRFVK 32 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~ 32 (139)
+|+++|+|||||||+...|..
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~ 22 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVE 22 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998874
No 439
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=97.30 E-value=0.0017 Score=46.25 Aligned_cols=23 Identities=26% Similarity=0.468 Sum_probs=19.5
Q ss_pred EEEEcCCCCcHHHHHHHHHhCCC
Q 032487 13 LVLLGDVGAGKSSLVLRFVKGQF 35 (139)
Q Consensus 13 i~i~G~~~~GKssli~~l~~~~~ 35 (139)
.++-|-=|+||||+++.++....
T Consensus 4 tvitGFLGsGKTTlL~~lL~~~~ 26 (323)
T COG0523 4 TVITGFLGSGKTTLLNHLLANRD 26 (323)
T ss_pred EEEeecCCCCHHHHHHHHHhccC
Confidence 56788999999999999997653
No 440
>PRK14531 adenylate kinase; Provisional
Probab=97.29 E-value=0.00029 Score=45.99 Aligned_cols=22 Identities=36% Similarity=0.647 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 032487 11 AKLVLLGDVGAGKSSLVLRFVK 32 (139)
Q Consensus 11 ~ki~i~G~~~~GKssli~~l~~ 32 (139)
.+|+++|+|||||||+.+.|..
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~ 24 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCA 24 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999988864
No 441
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.29 E-value=0.00025 Score=46.17 Aligned_cols=20 Identities=25% Similarity=0.541 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 032487 12 KLVLLGDVGAGKSSLVLRFV 31 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~ 31 (139)
-|+++|++||||||+++.+.
T Consensus 5 ii~i~G~~GsGKsTl~~~l~ 24 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIV 24 (188)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58899999999999999887
No 442
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=97.28 E-value=0.00025 Score=46.49 Aligned_cols=22 Identities=36% Similarity=0.658 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKG 33 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~ 33 (139)
+|+|+|++||||||+.+.|...
T Consensus 1 ~I~i~G~pGsGKst~a~~La~~ 22 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAKK 22 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998754
No 443
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.28 E-value=0.0003 Score=46.08 Aligned_cols=25 Identities=20% Similarity=0.424 Sum_probs=21.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCC
Q 032487 10 NAKLVLLGDVGAGKSSLVLRFVKGQ 34 (139)
Q Consensus 10 ~~ki~i~G~~~~GKssli~~l~~~~ 34 (139)
.-.++++|++|+||||+++.+++.-
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhc
Confidence 4469999999999999999988643
No 444
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.28 E-value=0.00027 Score=46.63 Aligned_cols=21 Identities=19% Similarity=0.495 Sum_probs=18.8
Q ss_pred EEEEcCCCCcHHHHHHHHHhC
Q 032487 13 LVLLGDVGAGKSSLVLRFVKG 33 (139)
Q Consensus 13 i~i~G~~~~GKssli~~l~~~ 33 (139)
|.|.|++|||||||++.|.+.
T Consensus 2 igi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 679999999999999998764
No 445
>PRK00625 shikimate kinase; Provisional
Probab=97.27 E-value=0.00032 Score=45.53 Aligned_cols=22 Identities=27% Similarity=0.249 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKG 33 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~ 33 (139)
+|+++|.+||||||+.+.+...
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~ 23 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKF 23 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999988643
No 446
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.27 E-value=0.001 Score=49.07 Aligned_cols=23 Identities=17% Similarity=0.368 Sum_probs=19.1
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHH
Q 032487 9 INAKLVLLGDVGAGKSSLVLRFV 31 (139)
Q Consensus 9 ~~~ki~i~G~~~~GKssli~~l~ 31 (139)
.+.-++++|++|+||||++..|.
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA 120 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLA 120 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHH
Confidence 35679999999999999976654
No 447
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=97.27 E-value=0.00029 Score=47.17 Aligned_cols=23 Identities=26% Similarity=0.346 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKGQ 34 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~~ 34 (139)
.++|+|++|+|||||++.+.+..
T Consensus 32 ~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 32 FVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCc
Confidence 57999999999999999999753
No 448
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.26 E-value=0.00032 Score=45.65 Aligned_cols=22 Identities=36% Similarity=0.409 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 032487 11 AKLVLLGDVGAGKSSLVLRFVK 32 (139)
Q Consensus 11 ~ki~i~G~~~~GKssli~~l~~ 32 (139)
-.++++|++|+|||||++.+..
T Consensus 22 ~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 22 VLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CEEEEECCCCCCHHHHHHHHhh
Confidence 3689999999999999998863
No 449
>PRK10646 ADP-binding protein; Provisional
Probab=97.25 E-value=0.003 Score=40.13 Aligned_cols=22 Identities=36% Similarity=0.720 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKG 33 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~ 33 (139)
-|++-|+=|+|||||++.+...
T Consensus 30 vi~L~GdLGaGKTtf~rgl~~~ 51 (153)
T PRK10646 30 VIYLYGDLGAGKTTFSRGFLQA 51 (153)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999864
No 450
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.25 E-value=0.00038 Score=46.36 Aligned_cols=26 Identities=15% Similarity=0.285 Sum_probs=22.7
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHhC
Q 032487 8 NINAKLVLLGDVGAGKSSLVLRFVKG 33 (139)
Q Consensus 8 ~~~~ki~i~G~~~~GKssli~~l~~~ 33 (139)
....-|.|.|++|||||||.+.|...
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 45778999999999999999998764
No 451
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.25 E-value=0.00031 Score=45.69 Aligned_cols=21 Identities=29% Similarity=0.602 Sum_probs=18.7
Q ss_pred EEEEcCCCCcHHHHHHHHHhC
Q 032487 13 LVLLGDVGAGKSSLVLRFVKG 33 (139)
Q Consensus 13 i~i~G~~~~GKssli~~l~~~ 33 (139)
|+++|+|||||||+.+.|...
T Consensus 2 i~i~G~pGsGKst~a~~la~~ 22 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVEN 22 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999988753
No 452
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.25 E-value=0.00031 Score=41.88 Aligned_cols=21 Identities=33% Similarity=0.719 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHH
Q 032487 11 AKLVLLGDVGAGKSSLVLRFV 31 (139)
Q Consensus 11 ~ki~i~G~~~~GKssli~~l~ 31 (139)
-.++++|++|+|||||++.+.
T Consensus 16 e~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 16 VGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEEcCCCCCHHHHHHHhh
Confidence 358999999999999999976
No 453
>PRK08233 hypothetical protein; Provisional
Probab=97.24 E-value=0.00038 Score=45.09 Aligned_cols=23 Identities=22% Similarity=0.375 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 032487 11 AKLVLLGDVGAGKSSLVLRFVKG 33 (139)
Q Consensus 11 ~ki~i~G~~~~GKssli~~l~~~ 33 (139)
.-|.|.|.+|+||||+.+.|...
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhh
Confidence 55788899999999999999864
No 454
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=97.24 E-value=0.00044 Score=44.81 Aligned_cols=24 Identities=21% Similarity=0.374 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhC
Q 032487 10 NAKLVLLGDVGAGKSSLVLRFVKG 33 (139)
Q Consensus 10 ~~ki~i~G~~~~GKssli~~l~~~ 33 (139)
..-+.|+|++|||||||++++...
T Consensus 6 ~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 6 IPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred ceEEEEECCCCChHHHHHHHHHHH
Confidence 345899999999999999999864
No 455
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.23 E-value=0.00032 Score=42.90 Aligned_cols=24 Identities=33% Similarity=0.582 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCC
Q 032487 11 AKLVLLGDVGAGKSSLVLRFVKGQ 34 (139)
Q Consensus 11 ~ki~i~G~~~~GKssli~~l~~~~ 34 (139)
--+++.|++|+|||++++++...-
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~~ 28 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQL 28 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHHH
T ss_pred cccEEEcCCCCCHHHHHHHHHHHh
Confidence 347899999999999999998753
No 456
>PRK02496 adk adenylate kinase; Provisional
Probab=97.23 E-value=0.0004 Score=45.32 Aligned_cols=22 Identities=32% Similarity=0.649 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 032487 11 AKLVLLGDVGAGKSSLVLRFVK 32 (139)
Q Consensus 11 ~ki~i~G~~~~GKssli~~l~~ 32 (139)
.+++|+|++||||||+.+.|..
T Consensus 2 ~~i~i~G~pGsGKst~a~~la~ 23 (184)
T PRK02496 2 TRLIFLGPPGAGKGTQAVVLAE 23 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998874
No 457
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.23 E-value=0.0024 Score=42.33 Aligned_cols=22 Identities=23% Similarity=0.443 Sum_probs=19.4
Q ss_pred EEEEcCCCCcHHHHHHHHHhCC
Q 032487 13 LVLLGDVGAGKSSLVLRFVKGQ 34 (139)
Q Consensus 13 i~i~G~~~~GKssli~~l~~~~ 34 (139)
++|.|++||||||+++.+.+.-
T Consensus 4 ilI~GptGSGKTTll~~ll~~~ 25 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDYI 25 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999887643
No 458
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=97.22 E-value=0.00038 Score=49.90 Aligned_cols=24 Identities=29% Similarity=0.387 Sum_probs=20.8
Q ss_pred EEEEcCCCCcHHHHHHHHHhCCCC
Q 032487 13 LVLLGDVGAGKSSLVLRFVKGQFI 36 (139)
Q Consensus 13 i~i~G~~~~GKssli~~l~~~~~~ 36 (139)
++++||+||||||+++.+.+-..+
T Consensus 34 ~~lLGPSGcGKTTlLR~IAGfe~p 57 (352)
T COG3842 34 VTLLGPSGCGKTTLLRMIAGFEQP 57 (352)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCC
Confidence 679999999999999999976543
No 459
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=97.22 E-value=0.00028 Score=45.10 Aligned_cols=21 Identities=33% Similarity=0.621 Sum_probs=18.7
Q ss_pred EEEEcCCCCcHHHHHHHHHhC
Q 032487 13 LVLLGDVGAGKSSLVLRFVKG 33 (139)
Q Consensus 13 i~i~G~~~~GKssli~~l~~~ 33 (139)
|+++|++||||||+.+.+...
T Consensus 1 i~l~G~~GsGKSTla~~l~~~ 21 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHR 21 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHh
Confidence 578999999999999998865
No 460
>PRK00300 gmk guanylate kinase; Provisional
Probab=97.21 E-value=0.00035 Score=46.31 Aligned_cols=25 Identities=40% Similarity=0.519 Sum_probs=21.4
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHhC
Q 032487 9 INAKLVLLGDVGAGKSSLVLRFVKG 33 (139)
Q Consensus 9 ~~~ki~i~G~~~~GKssli~~l~~~ 33 (139)
..--|+|+|++||||||+++.+.+.
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3445899999999999999999875
No 461
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.21 E-value=0.00033 Score=46.67 Aligned_cols=23 Identities=26% Similarity=0.348 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKGQ 34 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~~ 34 (139)
.++++|+.|+|||||++.+.+..
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 29 FVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999999753
No 462
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=97.21 E-value=0.00032 Score=46.79 Aligned_cols=21 Identities=43% Similarity=0.714 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 032487 12 KLVLLGDVGAGKSSLVLRFVK 32 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~ 32 (139)
+|+|+|+|||||||+...|..
T Consensus 1 rI~i~G~pGsGKsT~a~~La~ 21 (210)
T TIGR01351 1 RLVLLGPPGSGKGTQAKRIAE 21 (210)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998874
No 463
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=97.21 E-value=0.00036 Score=46.68 Aligned_cols=23 Identities=30% Similarity=0.482 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKGQ 34 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~~ 34 (139)
.++++|++|+|||||++.+.+..
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 31 MVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999753
No 464
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.21 E-value=0.00036 Score=46.29 Aligned_cols=23 Identities=30% Similarity=0.356 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKGQ 34 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~~ 34 (139)
.+.++|+.|+|||||++.+.+..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 28 IIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998754
No 465
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=97.21 E-value=0.00033 Score=45.90 Aligned_cols=23 Identities=48% Similarity=0.582 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKGQ 34 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~~ 34 (139)
.++|+|++|+|||||++.+.+..
T Consensus 20 ~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 20 VLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998753
No 466
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.20 E-value=0.00034 Score=46.60 Aligned_cols=22 Identities=36% Similarity=0.419 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKG 33 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~ 33 (139)
.++++|++|+|||||++.+.+-
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl 48 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATL 48 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCC
Confidence 7899999999999999999975
No 467
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.20 E-value=0.00033 Score=45.33 Aligned_cols=25 Identities=32% Similarity=0.577 Sum_probs=16.5
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHh
Q 032487 8 NINAKLVLLGDVGAGKSSLVLRFVK 32 (139)
Q Consensus 8 ~~~~ki~i~G~~~~GKssli~~l~~ 32 (139)
...-.++|.|++|+|||++++.+..
T Consensus 22 ~~~~~~ll~G~~G~GKT~ll~~~~~ 46 (185)
T PF13191_consen 22 GSPRNLLLTGESGSGKTSLLRALLD 46 (185)
T ss_dssp -----EEE-B-TTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3446799999999999999998774
No 468
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=97.20 E-value=0.00035 Score=45.66 Aligned_cols=22 Identities=32% Similarity=0.611 Sum_probs=20.2
Q ss_pred EEEEcCCCCcHHHHHHHHHhCC
Q 032487 13 LVLLGDVGAGKSSLVLRFVKGQ 34 (139)
Q Consensus 13 i~i~G~~~~GKssli~~l~~~~ 34 (139)
++++|++|+||+|+++.|....
T Consensus 5 ivl~Gpsg~GK~tl~~~L~~~~ 26 (184)
T smart00072 5 IVLSGPSGVGKGTLLAELIQEI 26 (184)
T ss_pred EEEECCCCCCHHHHHHHHHhcC
Confidence 8999999999999999998763
No 469
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=97.20 E-value=0.0004 Score=45.37 Aligned_cols=25 Identities=32% Similarity=0.352 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCC
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKGQFI 36 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~~~~ 36 (139)
.++|+|++|+|||||+|.+.+=..+
T Consensus 27 ~vAi~GpSGaGKSTLLnLIAGF~~P 51 (231)
T COG3840 27 IVAILGPSGAGKSTLLNLIAGFETP 51 (231)
T ss_pred EEEEECCCCccHHHHHHHHHhccCC
Confidence 6899999999999999999875543
No 470
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.19 E-value=0.00038 Score=47.19 Aligned_cols=23 Identities=35% Similarity=0.470 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKGQ 34 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~~ 34 (139)
.++++|+.|+|||||++.+.+..
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 28 ILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999753
No 471
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=97.19 E-value=0.0004 Score=46.31 Aligned_cols=23 Identities=30% Similarity=0.444 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKGQ 34 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~~ 34 (139)
.++++|++|+|||||++.+.+..
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03262 28 VVVIIGPSGSGKSTLLRCINLLE 50 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999753
No 472
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=97.19 E-value=0.0004 Score=46.31 Aligned_cols=23 Identities=39% Similarity=0.541 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKGQ 34 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~~ 34 (139)
.++|+|++|+|||||++.+.+..
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 29 FVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999999753
No 473
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=97.18 E-value=0.00041 Score=45.99 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKGQ 34 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~~ 34 (139)
.+.|+|++|+|||||++.+.+.-
T Consensus 26 ~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 26 MYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999753
No 474
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=97.18 E-value=0.00035 Score=44.02 Aligned_cols=26 Identities=27% Similarity=0.486 Sum_probs=23.0
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHhC
Q 032487 8 NINAKLVLLGDVGAGKSSLVLRFVKG 33 (139)
Q Consensus 8 ~~~~ki~i~G~~~~GKssli~~l~~~ 33 (139)
....+|+|.|-||+|||||..++...
T Consensus 5 r~~PNILvtGTPG~GKstl~~~lae~ 30 (176)
T KOG3347|consen 5 RERPNILVTGTPGTGKSTLAERLAEK 30 (176)
T ss_pred hcCCCEEEeCCCCCCchhHHHHHHHH
Confidence 56789999999999999999998843
No 475
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=97.18 E-value=0.00036 Score=47.49 Aligned_cols=23 Identities=30% Similarity=0.416 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKGQ 34 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~~ 34 (139)
.++|+|++|+|||||++.+.+..
T Consensus 30 ~~~l~G~nGsGKSTLl~~l~Gl~ 52 (243)
T TIGR02315 30 FVAIIGPSGAGKSTLLRCINRLV 52 (243)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 58899999999999999998753
No 476
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=97.18 E-value=0.00048 Score=45.87 Aligned_cols=26 Identities=19% Similarity=0.402 Sum_probs=22.4
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHhC
Q 032487 8 NINAKLVLLGDVGAGKSSLVLRFVKG 33 (139)
Q Consensus 8 ~~~~ki~i~G~~~~GKssli~~l~~~ 33 (139)
.....|.++|..|+|||||++++...
T Consensus 20 ~~~~~i~~~G~~gsGKTTli~~l~~~ 45 (207)
T TIGR00073 20 HGLVVLNFMSSPGSGKTTLIEKLIDN 45 (207)
T ss_pred cCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 34678999999999999999998854
No 477
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=97.17 E-value=0.00046 Score=44.68 Aligned_cols=24 Identities=29% Similarity=0.571 Sum_probs=20.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhC
Q 032487 10 NAKLVLLGDVGAGKSSLVLRFVKG 33 (139)
Q Consensus 10 ~~ki~i~G~~~~GKssli~~l~~~ 33 (139)
.-+|+++|++|+||||+.+.+...
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~ 27 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQ 27 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHH
Confidence 346999999999999999998854
No 478
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=97.17 E-value=0.00038 Score=47.67 Aligned_cols=21 Identities=38% Similarity=0.548 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 032487 12 KLVLLGDVGAGKSSLVLRFVK 32 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~ 32 (139)
-+.++||.|+|||||+..+++
T Consensus 32 ~~~iiGPNGaGKSTLlK~iLG 52 (254)
T COG1121 32 ITALIGPNGAGKSTLLKAILG 52 (254)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 478999999999999999998
No 479
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=97.17 E-value=0.00042 Score=46.23 Aligned_cols=23 Identities=35% Similarity=0.442 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKGQ 34 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~~ 34 (139)
.++++|+.|+|||||++.+.+..
T Consensus 30 ~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 30 FLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999998753
No 480
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.17 E-value=0.00038 Score=46.68 Aligned_cols=23 Identities=30% Similarity=0.413 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKGQ 34 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~~ 34 (139)
.+.++|+.|+|||||++.+.+..
T Consensus 32 ~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 32 FVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48899999999999999999753
No 481
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.17 E-value=0.00043 Score=46.07 Aligned_cols=23 Identities=30% Similarity=0.339 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKGQ 34 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~~ 34 (139)
.++++|+.|+|||||++.+.+..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 28 IFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999753
No 482
>PHA00729 NTP-binding motif containing protein
Probab=97.16 E-value=0.00048 Score=46.45 Aligned_cols=24 Identities=25% Similarity=0.556 Sum_probs=21.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhC
Q 032487 10 NAKLVLLGDVGAGKSSLVLRFVKG 33 (139)
Q Consensus 10 ~~ki~i~G~~~~GKssli~~l~~~ 33 (139)
..+|+|.|+||+|||++..++...
T Consensus 17 f~nIlItG~pGvGKT~LA~aLa~~ 40 (226)
T PHA00729 17 FVSAVIFGKQGSGKTTYALKVARD 40 (226)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999988754
No 483
>PRK04195 replication factor C large subunit; Provisional
Probab=97.16 E-value=0.0028 Score=47.60 Aligned_cols=24 Identities=33% Similarity=0.538 Sum_probs=21.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhC
Q 032487 10 NAKLVLLGDVGAGKSSLVLRFVKG 33 (139)
Q Consensus 10 ~~ki~i~G~~~~GKssli~~l~~~ 33 (139)
.-.+++.|++|+|||++++.+.+.
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~e 62 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALAND 62 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 446899999999999999999864
No 484
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=97.16 E-value=0.00041 Score=46.53 Aligned_cols=23 Identities=35% Similarity=0.475 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKGQ 34 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~~ 34 (139)
.++|+|++|+|||||++.+.+..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~ 50 (222)
T cd03224 28 IVALLGRNGAGKTTLLKTIMGLL 50 (222)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999988753
No 485
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=97.16 E-value=0.00044 Score=46.39 Aligned_cols=23 Identities=26% Similarity=0.400 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKGQ 34 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~~ 34 (139)
.++|+|+.|+|||||++.+.+..
T Consensus 33 ~~~i~G~nGsGKSTLl~~i~G~~ 55 (221)
T TIGR02211 33 IVAIVGSSGSGKSTLLHLLGGLD 55 (221)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999999763
No 486
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=97.16 E-value=0.0001 Score=48.07 Aligned_cols=21 Identities=43% Similarity=0.803 Sum_probs=19.3
Q ss_pred EEEEcCCCCcHHHHHHHHHhC
Q 032487 13 LVLLGDVGAGKSSLVLRFVKG 33 (139)
Q Consensus 13 i~i~G~~~~GKssli~~l~~~ 33 (139)
++|+|++|+||+++.++|+..
T Consensus 5 ivl~Gpsg~GK~~l~~~L~~~ 25 (183)
T PF00625_consen 5 IVLVGPSGSGKSTLAKRLIQE 25 (183)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999999863
No 487
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.16 E-value=0.0004 Score=45.92 Aligned_cols=22 Identities=32% Similarity=0.442 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKG 33 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~ 33 (139)
-++++|++||||||++|-+.+-
T Consensus 33 ~vv~lGpSGcGKTTLLnl~AGf 54 (259)
T COG4525 33 LVVVLGPSGCGKTTLLNLIAGF 54 (259)
T ss_pred EEEEEcCCCccHHHHHHHHhcC
Confidence 3789999999999999998864
No 488
>PF05729 NACHT: NACHT domain
Probab=97.14 E-value=0.00045 Score=43.78 Aligned_cols=21 Identities=33% Similarity=0.631 Sum_probs=18.8
Q ss_pred EEEEcCCCCcHHHHHHHHHhC
Q 032487 13 LVLLGDVGAGKSSLVLRFVKG 33 (139)
Q Consensus 13 i~i~G~~~~GKssli~~l~~~ 33 (139)
++|.|++|+|||+++..+...
T Consensus 3 l~I~G~~G~GKStll~~~~~~ 23 (166)
T PF05729_consen 3 LWISGEPGSGKSTLLRKLAQQ 23 (166)
T ss_pred EEEECCCCCChHHHHHHHHHH
Confidence 689999999999999998853
No 489
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=97.14 E-value=0.00049 Score=46.39 Aligned_cols=23 Identities=30% Similarity=0.424 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKGQ 34 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~~ 34 (139)
.++++|++|+|||||++.+.+..
T Consensus 28 ~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 28 ITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 58899999999999999998764
No 490
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=97.14 E-value=0.00046 Score=46.64 Aligned_cols=23 Identities=35% Similarity=0.355 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKGQ 34 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~~ 34 (139)
.++++|++|+|||||++.+.+..
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~Gl~ 50 (232)
T cd03218 28 IVGLLGPNGAGKTTTFYMIVGLV 50 (232)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999999754
No 491
>PRK06762 hypothetical protein; Provisional
Probab=97.14 E-value=0.00048 Score=44.13 Aligned_cols=23 Identities=17% Similarity=0.527 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 032487 11 AKLVLLGDVGAGKSSLVLRFVKG 33 (139)
Q Consensus 11 ~ki~i~G~~~~GKssli~~l~~~ 33 (139)
.-|++.|.+||||||+.+.|...
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~ 25 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQER 25 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 35789999999999999988754
No 492
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=97.14 E-value=0.00042 Score=46.44 Aligned_cols=23 Identities=30% Similarity=0.384 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKGQ 34 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~~ 34 (139)
.++|+|++|+|||||++.+.+..
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 30 IFGLLGHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999999864
No 493
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.14 E-value=0.00047 Score=46.24 Aligned_cols=23 Identities=30% Similarity=0.352 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKGQ 34 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~~ 34 (139)
.++++|+.|+|||||++.+.+..
T Consensus 28 ~~~i~G~nGsGKSTLl~~i~G~~ 50 (220)
T cd03265 28 IFGLLGPNGAGKTTTIKMLTTLL 50 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999753
No 494
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=97.14 E-value=0.00085 Score=41.06 Aligned_cols=59 Identities=22% Similarity=0.382 Sum_probs=31.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCC--cccccceeeEEEEEEEEECC-cEEEEEEEeCCCcccc
Q 032487 11 AKLVLLGDVGAGKSSLVLRFVKGQFI--EFQESTIGAAFFSQTLAVND-ATVKFEIWDTAGQERY 72 (139)
Q Consensus 11 ~ki~i~G~~~~GKssli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~i~d~~g~~~~ 72 (139)
--|++-|+-|+|||||++.+...--. ....||... ...+.... .-+++-++-..+.+..
T Consensus 16 ~vi~L~GdLGaGKTtf~r~l~~~lg~~~~V~SPTF~l---~~~Y~~~~~~l~H~DLYRl~~~~e~ 77 (123)
T PF02367_consen 16 DVILLSGDLGAGKTTFVRGLARALGIDEEVTSPTFSL---VNEYEGGNIPLYHFDLYRLEDPEEL 77 (123)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTT--S----TTTTS---EEEEEETTEEEEEEE-TT-SSTHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcCCCCCcCCCCeEE---EEEecCCCceEEEeeccccCCHHHH
Confidence 34899999999999999998853211 223444432 22222222 2345566655554443
No 495
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.14 E-value=0.00048 Score=45.95 Aligned_cols=23 Identities=35% Similarity=0.469 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKGQ 34 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~~ 34 (139)
.++++|+.|+|||||++.+.+..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 28 FLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48899999999999999998753
No 496
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.13 E-value=0.00045 Score=46.73 Aligned_cols=21 Identities=33% Similarity=0.518 Sum_probs=19.4
Q ss_pred EEEEcCCCCcHHHHHHHHHhC
Q 032487 13 LVLLGDVGAGKSSLVLRFVKG 33 (139)
Q Consensus 13 i~i~G~~~~GKssli~~l~~~ 33 (139)
++++|++|+|||||++.+.+.
T Consensus 33 VaiIG~SGaGKSTLLR~lngl 53 (258)
T COG3638 33 VAIIGPSGAGKSTLLRSLNGL 53 (258)
T ss_pred EEEECCCCCcHHHHHHHHhcc
Confidence 789999999999999999873
No 497
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.13 E-value=0.00047 Score=44.79 Aligned_cols=22 Identities=36% Similarity=0.469 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKG 33 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~ 33 (139)
.+.++|+.|+|||||++.+.+.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~ 49 (178)
T cd03229 28 IVALLGPSGSGKSTLLRCIAGL 49 (178)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999875
No 498
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=97.13 E-value=0.00044 Score=46.83 Aligned_cols=23 Identities=30% Similarity=0.234 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKGQ 34 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~~ 34 (139)
.++++|+.|+|||||++.+.+..
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~Gl~ 50 (236)
T cd03219 28 IHGLIGPNGAGKTTLFNLISGFL 50 (236)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 58999999999999999998753
No 499
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=97.12 E-value=0.00051 Score=43.22 Aligned_cols=21 Identities=29% Similarity=0.521 Sum_probs=18.7
Q ss_pred EEEEcCCCCcHHHHHHHHHhC
Q 032487 13 LVLLGDVGAGKSSLVLRFVKG 33 (139)
Q Consensus 13 i~i~G~~~~GKssli~~l~~~ 33 (139)
+++.|++||||||+.+.+...
T Consensus 2 i~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhh
Confidence 688999999999999988764
No 500
>PLN02200 adenylate kinase family protein
Probab=97.12 E-value=0.00064 Score=46.26 Aligned_cols=24 Identities=25% Similarity=0.375 Sum_probs=20.9
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHh
Q 032487 9 INAKLVLLGDVGAGKSSLVLRFVK 32 (139)
Q Consensus 9 ~~~ki~i~G~~~~GKssli~~l~~ 32 (139)
.+..|+|+|+|||||||+...|..
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~ 65 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVE 65 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 356799999999999999988874
Done!