Query 032487
Match_columns 139
No_of_seqs 114 out of 1370
Neff 10.4
Searched_HMMs 29240
Date Tue Mar 26 00:17:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032487.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032487hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 100.0 4.1E-35 1.4E-39 194.9 14.1 138 1-138 1-141 (216)
2 2efe_B Small GTP-binding prote 100.0 1E-30 3.6E-35 168.4 17.6 137 1-137 3-139 (181)
3 1r2q_A RAS-related protein RAB 100.0 5.3E-30 1.8E-34 163.3 16.6 132 6-137 2-133 (170)
4 2fu5_C RAS-related protein RAB 100.0 1.8E-30 6E-35 167.9 14.4 131 7-137 5-135 (183)
5 2a5j_A RAS-related protein RAB 100.0 6.4E-30 2.2E-34 166.5 16.7 133 5-137 16-148 (191)
6 2hup_A RAS-related protein RAB 100.0 2.5E-30 8.5E-35 170.0 14.9 132 6-137 25-156 (201)
7 1z0j_A RAB-22, RAS-related pro 100.0 1.5E-29 5.2E-34 161.3 17.9 131 7-137 3-133 (170)
8 2ew1_A RAS-related protein RAB 100.0 4.6E-30 1.6E-34 168.9 15.9 131 7-137 23-153 (201)
9 3tw8_B RAS-related protein RAB 100.0 1.1E-29 3.7E-34 163.5 17.1 134 3-137 2-135 (181)
10 3tkl_A RAS-related protein RAB 100.0 1.3E-29 4.6E-34 165.2 17.6 132 6-137 12-143 (196)
11 2bme_A RAB4A, RAS-related prot 100.0 7.4E-30 2.5E-34 165.2 16.1 134 4-137 4-137 (186)
12 2bcg_Y Protein YP2, GTP-bindin 100.0 1.7E-29 5.7E-34 166.3 17.7 132 6-137 4-135 (206)
13 1z08_A RAS-related protein RAB 100.0 4.8E-30 1.7E-34 163.7 14.3 132 6-137 2-133 (170)
14 1z0f_A RAB14, member RAS oncog 100.0 1.3E-29 4.4E-34 162.8 16.1 132 6-137 11-142 (179)
15 2gf9_A RAS-related protein RAB 100.0 3E-29 1E-33 163.1 18.0 130 7-136 19-148 (189)
16 2fg5_A RAB-22B, RAS-related pr 100.0 1.3E-29 4.4E-34 165.3 16.3 132 6-137 19-150 (192)
17 1ek0_A Protein (GTP-binding pr 100.0 2.8E-29 9.6E-34 159.9 16.8 128 9-136 2-132 (170)
18 2il1_A RAB12; G-protein, GDP, 100.0 4.8E-30 1.6E-34 167.4 13.2 134 4-137 20-153 (192)
19 2g6b_A RAS-related protein RAB 100.0 3.3E-29 1.1E-33 161.2 16.9 134 4-137 4-138 (180)
20 2oil_A CATX-8, RAS-related pro 100.0 2E-29 6.9E-34 164.3 16.0 132 6-137 21-152 (193)
21 2y8e_A RAB-protein 6, GH09086P 100.0 1.8E-29 6.1E-34 162.2 15.5 131 7-137 11-141 (179)
22 1zbd_A Rabphilin-3A; G protein 100.0 4.3E-29 1.5E-33 163.9 17.4 130 7-136 5-134 (203)
23 1z06_A RAS-related protein RAB 100.0 2.8E-29 9.6E-34 163.2 15.6 132 6-137 16-149 (189)
24 3kkq_A RAS-related protein M-R 100.0 5.2E-29 1.8E-33 160.9 16.6 131 6-137 14-145 (183)
25 2o52_A RAS-related protein RAB 100.0 1.6E-29 5.4E-34 165.9 14.1 131 7-137 22-152 (200)
26 3t5g_A GTP-binding protein RHE 100.0 1.1E-28 3.6E-33 159.2 17.5 129 8-137 4-133 (181)
27 3cpj_B GTP-binding protein YPT 100.0 2.9E-29 1E-33 167.2 15.2 131 7-137 10-140 (223)
28 2fn4_A P23, RAS-related protei 100.0 5.8E-29 2E-33 160.0 15.9 133 4-137 3-136 (181)
29 1z2a_A RAS-related protein RAB 100.0 3.6E-29 1.2E-33 159.3 14.7 129 8-137 3-131 (168)
30 3dz8_A RAS-related protein RAB 100.0 3.4E-30 1.2E-34 167.9 9.8 132 6-137 19-150 (191)
31 3c5c_A RAS-like protein 12; GD 100.0 6.7E-29 2.3E-33 161.4 15.3 130 6-137 17-149 (187)
32 1g16_A RAS-related protein SEC 100.0 7E-29 2.4E-33 158.2 15.2 125 9-134 2-126 (170)
33 2hxs_A RAB-26, RAS-related pro 100.0 1.9E-29 6.6E-34 162.1 12.5 132 6-137 2-137 (178)
34 1wms_A RAB-9, RAB9, RAS-relate 100.0 1.3E-28 4.6E-33 158.0 16.4 129 6-135 3-135 (177)
35 3bc1_A RAS-related protein RAB 100.0 1.1E-28 3.7E-33 160.3 16.1 131 6-136 7-148 (195)
36 3q3j_B RHO-related GTP-binding 100.0 1.1E-28 3.7E-33 163.7 15.7 123 6-130 23-146 (214)
37 3cbq_A GTP-binding protein REM 100.0 3.7E-29 1.3E-33 163.8 12.4 132 6-137 19-152 (195)
38 2p5s_A RAS and EF-hand domain 100.0 4.6E-29 1.6E-33 163.5 12.6 122 7-128 25-146 (199)
39 3l0i_B RAS-related protein RAB 100.0 6.4E-30 2.2E-34 167.6 8.2 132 6-137 29-160 (199)
40 1m7b_A RND3/RHOE small GTP-bin 100.0 3.3E-28 1.1E-32 157.6 16.0 121 7-129 4-125 (184)
41 1gwn_A RHO-related GTP-binding 100.0 2.8E-28 9.6E-33 160.8 15.9 122 6-129 24-146 (205)
42 1vg8_A RAS-related protein RAB 100.0 2.7E-28 9.4E-33 160.3 15.8 124 6-129 4-131 (207)
43 1x3s_A RAS-related protein RAB 100.0 3.6E-28 1.2E-32 158.2 16.2 123 7-129 12-135 (195)
44 1ky3_A GTP-binding protein YPT 100.0 9.9E-29 3.4E-33 159.1 12.9 130 6-135 4-139 (182)
45 3cph_A RAS-related protein SEC 100.0 5.7E-28 2E-32 159.4 16.7 127 7-134 17-143 (213)
46 3reg_A RHO-like small GTPase; 100.0 7E-28 2.4E-32 157.1 16.9 129 6-136 19-150 (194)
47 3oes_A GTPase rhebl1; small GT 100.0 3E-28 1E-32 159.8 15.0 129 8-137 22-151 (201)
48 1c1y_A RAS-related protein RAP 100.0 3.7E-28 1.3E-32 154.4 14.9 128 9-137 2-130 (167)
49 2nzj_A GTP-binding protein REM 100.0 3.8E-28 1.3E-32 155.5 14.6 129 8-137 2-133 (175)
50 2f7s_A C25KG, RAS-related prot 100.0 1.2E-28 4.2E-33 163.3 12.4 131 7-137 22-163 (217)
51 3q85_A GTP-binding protein REM 100.0 3.1E-28 1E-32 155.3 13.8 128 10-137 2-131 (169)
52 2yc2_C IFT27, small RAB-relate 100.0 6E-29 2E-33 163.4 10.3 130 8-137 18-155 (208)
53 3clv_A RAB5 protein, putative; 100.0 1.5E-27 5E-32 156.0 16.6 127 7-136 4-167 (208)
54 1kao_A RAP2A; GTP-binding prot 100.0 8.3E-28 2.8E-32 152.6 15.0 128 9-137 2-130 (167)
55 3ihw_A Centg3; RAS, centaurin, 100.0 1.3E-27 4.4E-32 155.1 15.6 125 6-137 16-143 (184)
56 1u8z_A RAS-related protein RAL 100.0 7.8E-28 2.7E-32 152.9 14.3 128 9-137 3-131 (168)
57 2atx_A Small GTP binding prote 100.0 1.6E-27 5.3E-32 155.4 15.8 122 7-130 15-137 (194)
58 2a9k_A RAS-related protein RAL 100.0 8.7E-28 3E-32 155.2 14.3 130 7-137 15-145 (187)
59 2bov_A RAla, RAS-related prote 100.0 1.9E-27 6.5E-32 156.1 15.6 130 7-137 11-141 (206)
60 2q3h_A RAS homolog gene family 100.0 1.7E-27 5.7E-32 156.1 15.3 123 6-130 16-139 (201)
61 3gj0_A GTP-binding nuclear pro 100.0 1E-27 3.5E-32 159.4 14.3 126 5-131 10-135 (221)
62 3q72_A GTP-binding protein RAD 100.0 1.6E-27 5.4E-32 151.6 14.4 126 10-137 2-128 (166)
63 2iwr_A Centaurin gamma 1; ANK 100.0 2.3E-27 7.8E-32 152.6 15.2 123 8-137 5-132 (178)
64 4djt_A GTP-binding nuclear pro 100.0 5.1E-28 1.7E-32 160.4 12.3 132 6-137 7-139 (218)
65 1mh1_A RAC1; GTP-binding, GTPa 100.0 3.1E-27 1.1E-31 152.6 15.3 122 7-130 2-124 (186)
66 2gco_A H9, RHO-related GTP-bin 100.0 3.4E-27 1.1E-31 154.9 15.3 122 7-130 22-144 (201)
67 2atv_A RERG, RAS-like estrogen 100.0 1.9E-27 6.5E-32 155.4 13.8 129 7-137 25-154 (196)
68 2g3y_A GTP-binding protein GEM 100.0 2.4E-27 8.2E-32 157.0 13.9 131 7-137 34-167 (211)
69 4gzl_A RAS-related C3 botulinu 100.0 2.1E-27 7.3E-32 156.3 13.5 124 6-131 26-150 (204)
70 2j0v_A RAC-like GTP-binding pr 100.0 1.7E-27 5.9E-32 157.2 12.9 124 7-132 6-130 (212)
71 4dsu_A GTPase KRAS, isoform 2B 100.0 1.8E-26 6.2E-31 149.4 16.6 122 8-130 2-124 (189)
72 2fv8_A H6, RHO-related GTP-bin 100.0 9.3E-27 3.2E-31 153.4 15.5 121 8-130 23-144 (207)
73 2j1l_A RHO-related GTP-binding 100.0 3.7E-27 1.3E-31 156.2 13.6 122 8-131 32-154 (214)
74 2erx_A GTP-binding protein DI- 100.0 3.7E-27 1.3E-31 150.3 13.2 127 9-136 2-130 (172)
75 3con_A GTPase NRAS; structural 99.9 2.8E-26 9.5E-31 149.0 16.5 122 7-129 18-140 (190)
76 2f9l_A RAB11B, member RAS onco 99.9 6.4E-26 2.2E-30 148.6 16.9 130 8-137 3-132 (199)
77 2ce2_X GTPase HRAS; signaling 99.9 3.8E-26 1.3E-30 144.7 15.2 120 9-129 2-122 (166)
78 3bwd_D RAC-like GTP-binding pr 99.9 1.1E-27 3.6E-32 154.4 7.7 124 7-132 5-129 (182)
79 3t1o_A Gliding protein MGLA; G 99.9 6.7E-27 2.3E-31 152.3 11.4 124 6-130 10-150 (198)
80 2cjw_A GTP-binding protein GEM 99.9 4.4E-26 1.5E-30 148.8 15.1 129 8-137 4-136 (192)
81 4bas_A ADP-ribosylation factor 99.9 4E-26 1.4E-30 149.0 14.7 121 6-130 13-142 (199)
82 2gf0_A GTP-binding protein DI- 99.9 2.5E-26 8.4E-31 150.0 13.7 122 7-129 5-128 (199)
83 1zd9_A ADP-ribosylation factor 99.9 6.6E-26 2.2E-30 147.3 15.2 120 7-130 19-139 (188)
84 1oix_A RAS-related protein RAB 99.9 1.4E-25 4.9E-30 146.2 16.4 130 7-136 26-155 (191)
85 1ksh_A ARF-like protein 2; sma 99.9 1.1E-25 3.7E-30 145.7 15.3 119 8-131 16-135 (186)
86 1m2o_B GTP-binding protein SAR 99.9 1.5E-25 5.1E-30 146.0 15.6 118 7-129 20-138 (190)
87 2h57_A ADP-ribosylation factor 99.9 8.9E-26 3E-30 146.7 14.4 120 7-130 18-141 (190)
88 1f6b_A SAR1; gtpases, N-termin 99.9 3.6E-26 1.2E-30 149.8 12.4 117 8-129 23-140 (198)
89 1upt_A ARL1, ADP-ribosylation 99.9 3.3E-25 1.1E-29 141.3 16.0 118 8-130 5-123 (171)
90 2h17_A ADP-ribosylation factor 99.9 8.5E-26 2.9E-30 145.9 13.1 120 6-130 17-137 (181)
91 1zj6_A ADP-ribosylation factor 99.9 8.3E-26 2.8E-30 146.5 12.8 118 8-130 14-132 (187)
92 1r8s_A ADP-ribosylation factor 99.9 9.4E-26 3.2E-30 143.1 12.7 115 11-130 1-116 (164)
93 2b6h_A ADP-ribosylation factor 99.9 1.4E-25 4.9E-30 146.3 13.7 119 7-130 26-145 (192)
94 1fzq_A ADP-ribosylation factor 99.9 1.3E-25 4.5E-30 145.2 13.1 120 7-131 13-133 (181)
95 2zej_A Dardarin, leucine-rich 99.9 1.4E-26 4.7E-31 150.1 8.3 123 10-133 2-130 (184)
96 1moz_A ARL1, ADP-ribosylation 99.9 2E-25 6.7E-30 144.0 10.2 118 8-130 16-134 (183)
97 2x77_A ADP-ribosylation factor 99.9 4.3E-25 1.5E-29 143.3 11.6 118 8-130 20-138 (189)
98 2wkq_A NPH1-1, RAS-related C3 99.9 2E-24 6.7E-29 150.9 15.0 121 8-130 153-274 (332)
99 3th5_A RAS-related C3 botulinu 99.9 2.6E-27 9.1E-32 155.6 0.0 122 7-130 27-149 (204)
100 3llu_A RAS-related GTP-binding 99.9 7.5E-25 2.6E-29 143.2 11.4 120 6-129 16-143 (196)
101 2fh5_B SR-beta, signal recogni 99.9 8.8E-24 3E-28 139.6 13.9 122 7-131 4-131 (214)
102 3r7w_A Gtpase1, GTP-binding pr 99.9 2.8E-24 9.7E-29 149.4 11.2 118 9-129 2-129 (307)
103 2lkc_A Translation initiation 99.9 5E-24 1.7E-28 136.7 10.1 116 6-130 4-122 (178)
104 3r7w_B Gtpase2, GTP-binding pr 99.9 2.8E-24 9.6E-29 149.5 7.9 113 12-130 1-121 (331)
105 3lvq_E ARF-GAP with SH3 domain 99.9 5.9E-23 2E-27 150.8 15.1 118 8-130 320-438 (497)
106 2ged_A SR-beta, signal recogni 99.9 5.7E-24 1.9E-28 138.3 7.9 118 7-133 45-174 (193)
107 3o47_A ADP-ribosylation factor 99.9 2.4E-23 8.1E-28 146.0 11.4 119 8-131 163-282 (329)
108 1nrj_B SR-beta, signal recogni 99.9 5.7E-24 2E-28 140.9 7.3 119 6-133 8-138 (218)
109 3c5h_A Glucocorticoid receptor 99.9 8.2E-25 2.8E-29 148.6 2.7 128 6-133 15-216 (255)
110 2wji_A Ferrous iron transport 99.9 6.7E-23 2.3E-27 130.5 11.3 118 9-134 2-127 (165)
111 2qu8_A Putative nucleolar GTP- 99.9 8.6E-23 3E-27 136.3 11.3 126 7-135 26-162 (228)
112 2gj8_A MNME, tRNA modification 99.9 8.6E-23 2.9E-27 131.0 9.5 119 9-130 3-130 (172)
113 2wjg_A FEOB, ferrous iron tran 99.9 1.9E-22 6.4E-27 130.6 10.6 121 6-134 3-131 (188)
114 3dpu_A RAB family protein; roc 99.9 1.6E-22 5.4E-27 149.8 9.8 126 7-136 38-171 (535)
115 1svi_A GTP-binding protein YSX 99.9 3.6E-22 1.2E-26 129.9 8.2 119 8-133 21-152 (195)
116 2dyk_A GTP-binding protein; GT 99.9 1.9E-21 6.4E-26 122.7 10.8 114 11-130 2-123 (161)
117 3a1s_A Iron(II) transport prot 99.9 3.1E-21 1.1E-25 131.2 12.1 119 8-134 3-129 (258)
118 3def_A T7I23.11 protein; chlor 99.9 5.7E-21 2E-25 130.1 11.9 125 8-135 34-171 (262)
119 3iby_A Ferrous iron transport 99.9 1.4E-21 4.7E-26 132.8 8.7 115 11-133 2-128 (256)
120 3i8s_A Ferrous iron transport 99.9 2.3E-21 7.8E-26 132.9 9.3 116 9-132 2-129 (274)
121 2cxx_A Probable GTP-binding pr 99.8 6.3E-22 2.2E-26 128.1 4.5 115 11-131 2-138 (190)
122 3iev_A GTP-binding protein ERA 99.8 6.7E-21 2.3E-25 132.5 9.7 121 5-129 5-136 (308)
123 3k53_A Ferrous iron transport 99.8 1.8E-20 6.2E-25 128.1 10.8 118 9-133 2-127 (271)
124 1wf3_A GTP-binding protein; GT 99.8 4.7E-20 1.6E-24 127.8 12.3 119 8-131 5-133 (301)
125 1h65_A Chloroplast outer envel 99.8 1.2E-20 4E-25 129.0 8.4 126 8-135 37-174 (270)
126 3lxw_A GTPase IMAP family memb 99.8 1.7E-20 5.9E-25 126.7 9.1 122 7-130 18-154 (247)
127 3lxx_A GTPase IMAP family memb 99.8 8.3E-20 2.8E-24 122.7 12.1 124 7-134 26-164 (239)
128 3b1v_A Ferrous iron uptake tra 99.8 8.7E-21 3E-25 129.8 7.2 117 9-134 2-126 (272)
129 3pqc_A Probable GTP-binding pr 99.8 5.9E-20 2E-24 119.1 10.2 114 7-130 20-148 (195)
130 3gee_A MNME, tRNA modification 99.8 3.6E-20 1.2E-24 135.2 10.1 120 9-132 232-360 (476)
131 4dhe_A Probable GTP-binding pr 99.8 6.7E-21 2.3E-25 126.4 5.0 120 8-131 27-160 (223)
132 2hjg_A GTP-binding protein ENG 99.8 2.1E-20 7.2E-25 135.4 7.4 121 8-134 173-305 (436)
133 2xtp_A GTPase IMAP family memb 99.8 1.2E-18 4.3E-23 118.2 13.1 121 7-130 19-154 (260)
134 3qq5_A Small GTP-binding prote 99.8 6.4E-20 2.2E-24 132.1 6.0 120 7-133 31-158 (423)
135 4dcu_A GTP-binding protein ENG 99.8 2.2E-19 7.4E-24 130.8 7.3 124 7-136 192-327 (456)
136 2hjg_A GTP-binding protein ENG 99.8 1.6E-19 5.4E-24 130.9 6.5 116 10-130 3-126 (436)
137 1mky_A Probable GTP-binding pr 99.8 1.5E-18 5E-23 125.9 11.3 111 11-129 2-124 (439)
138 3sjy_A Translation initiation 99.8 4.4E-18 1.5E-22 122.2 13.6 124 5-131 3-145 (403)
139 3p26_A Elongation factor 1 alp 99.8 3.1E-19 1E-23 130.8 7.7 121 8-130 31-186 (483)
140 3t5d_A Septin-7; GTP-binding p 99.8 3.4E-19 1.2E-23 122.0 7.4 120 7-130 5-159 (274)
141 2e87_A Hypothetical protein PH 99.8 5.8E-18 2E-22 119.9 13.3 121 8-131 165-296 (357)
142 2qtf_A Protein HFLX, GTP-bindi 99.8 3.1E-18 1.1E-22 121.4 11.7 118 10-130 178-307 (364)
143 3j2k_7 ERF3, eukaryotic polype 99.8 2.1E-18 7.2E-23 125.0 10.8 121 6-129 13-169 (439)
144 1lnz_A SPO0B-associated GTP-bi 99.8 3.7E-19 1.3E-23 125.2 6.5 119 11-130 159-289 (342)
145 3geh_A MNME, tRNA modification 99.8 5.2E-19 1.8E-23 128.7 7.2 117 9-133 223-348 (462)
146 4fid_A G protein alpha subunit 99.8 1.3E-18 4.5E-23 121.9 8.6 73 58-130 160-243 (340)
147 3izy_P Translation initiation 99.8 1.8E-20 6.2E-25 138.2 -1.0 118 8-130 2-119 (537)
148 4dcu_A GTP-binding protein ENG 99.8 3.1E-19 1.1E-23 130.0 5.3 119 7-130 20-146 (456)
149 3ohm_A Guanine nucleotide-bind 99.8 1.2E-18 4.1E-23 121.6 7.8 74 58-131 166-250 (327)
150 1xzp_A Probable tRNA modificat 99.8 8E-19 2.7E-23 128.3 6.8 113 10-130 243-365 (482)
151 1s0u_A EIF-2-gamma, translatio 99.8 2.3E-17 7.7E-22 118.7 13.9 124 6-131 4-151 (408)
152 3tr5_A RF-3, peptide chain rel 99.8 6.1E-19 2.1E-23 130.2 5.7 117 8-130 11-149 (528)
153 3cb4_D GTP-binding protein LEP 99.8 3.5E-18 1.2E-22 127.6 9.6 118 9-130 3-138 (599)
154 1cip_A Protein (guanine nucleo 99.8 2.1E-18 7.3E-23 121.7 7.8 73 58-130 192-275 (353)
155 2c78_A Elongation factor TU-A; 99.8 2.7E-18 9.1E-23 123.4 8.4 119 7-129 8-142 (405)
156 1jny_A EF-1-alpha, elongation 99.7 3.5E-18 1.2E-22 123.8 8.7 119 8-129 4-158 (435)
157 1zo1_I IF2, translation initia 99.7 1.7E-19 5.8E-24 132.1 1.8 117 8-130 2-118 (501)
158 2ywe_A GTP-binding protein LEP 99.7 1.9E-17 6.4E-22 123.6 12.6 119 8-130 4-140 (600)
159 1azs_C GS-alpha; complex (lyas 99.7 2.2E-17 7.6E-22 118.0 12.1 73 59-131 217-300 (402)
160 1wb1_A Translation elongation 99.7 1.2E-17 4.1E-22 122.3 11.0 116 6-130 15-140 (482)
161 1d2e_A Elongation factor TU (E 99.7 8.6E-18 3E-22 120.5 9.9 117 9-129 2-133 (397)
162 1zun_B Sulfate adenylate trans 99.7 1.7E-17 5.9E-22 120.1 11.6 119 8-129 22-171 (434)
163 1g7s_A Translation initiation 99.7 5.3E-18 1.8E-22 126.6 8.5 116 8-130 3-137 (594)
164 1ega_A Protein (GTP-binding pr 99.7 9.6E-18 3.3E-22 116.3 9.2 115 8-129 6-130 (301)
165 2qag_A Septin-2, protein NEDD5 99.7 2.3E-18 8E-23 122.0 6.2 122 8-133 35-192 (361)
166 1r5b_A Eukaryotic peptide chai 99.7 3.1E-18 1.1E-22 125.0 6.8 122 8-129 41-195 (467)
167 3izq_1 HBS1P, elongation facto 99.7 9E-19 3.1E-23 131.3 3.8 122 7-130 164-320 (611)
168 1kk1_A EIF2gamma; initiation o 99.7 6E-17 2E-21 116.5 12.9 123 6-130 6-152 (410)
169 1dar_A EF-G, elongation factor 99.7 1.6E-17 5.3E-22 126.2 9.6 122 5-130 7-144 (691)
170 2h5e_A Peptide chain release f 99.7 1.9E-17 6.5E-22 122.3 9.1 120 8-131 11-150 (529)
171 1mky_A Probable GTP-binding pr 99.7 4.7E-17 1.6E-21 118.0 11.0 119 8-132 178-309 (439)
172 1f60_A Elongation factor EEF1A 99.7 4.2E-18 1.4E-22 124.0 5.0 120 7-129 4-159 (458)
173 2xex_A Elongation factor G; GT 99.7 6.5E-17 2.2E-21 122.8 11.6 124 1-130 1-142 (693)
174 2xtz_A Guanine nucleotide-bind 99.7 8E-17 2.8E-21 113.7 11.0 75 57-131 181-266 (354)
175 2rdo_7 EF-G, elongation factor 99.7 1.5E-16 5E-21 121.0 11.6 121 6-130 6-149 (704)
176 2aka_B Dynamin-1; fusion prote 99.7 4.3E-17 1.5E-21 112.5 7.6 121 8-131 24-208 (299)
177 1n0u_A EF-2, elongation factor 99.7 1.1E-16 3.7E-21 123.8 9.9 119 7-129 16-164 (842)
178 3t34_A Dynamin-related protein 99.7 1.5E-16 5E-21 112.7 9.3 121 10-132 34-220 (360)
179 1jwy_B Dynamin A GTPase domain 99.7 9.3E-17 3.2E-21 111.6 8.0 70 59-131 131-214 (315)
180 2elf_A Protein translation elo 99.7 5.5E-17 1.9E-21 115.3 6.3 103 12-130 23-127 (370)
181 3avx_A Elongation factor TS, e 99.7 7.7E-17 2.6E-21 126.5 7.5 119 7-129 293-426 (1289)
182 2j69_A Bacterial dynamin-like 99.7 4.1E-16 1.4E-20 118.5 10.9 120 9-131 68-246 (695)
183 2qpt_A EH domain-containing pr 99.7 2.7E-17 9.1E-22 122.1 4.3 122 8-132 63-235 (550)
184 3mca_A HBS1, elongation factor 99.7 5.2E-18 1.8E-22 126.8 -0.3 120 7-129 174-329 (592)
185 1wxq_A GTP-binding protein; st 99.6 9.9E-16 3.4E-20 109.7 8.9 85 11-95 1-114 (397)
186 1pui_A ENGB, probable GTP-bind 99.6 6.5E-16 2.2E-20 101.4 6.8 114 8-130 24-152 (210)
187 2dy1_A Elongation factor G; tr 99.6 2.1E-15 7.2E-20 114.2 8.6 117 8-128 7-139 (665)
188 2qag_C Septin-7; cell cycle, c 99.6 9.1E-15 3.1E-19 105.2 8.9 123 7-133 28-185 (418)
189 2x2e_A Dynamin-1; nitration, h 99.6 4E-15 1.4E-19 105.2 6.0 120 9-131 30-213 (353)
190 3vqt_A RF-3, peptide chain rel 99.5 1.1E-13 3.8E-18 102.7 11.1 118 8-131 29-168 (548)
191 4a9a_A Ribosome-interacting GT 99.5 7E-14 2.4E-18 99.3 9.4 115 10-128 72-195 (376)
192 1zcb_A G alpha I/13; GTP-bindi 99.5 3.6E-14 1.2E-18 100.5 7.8 86 41-130 187-283 (362)
193 1udx_A The GTP-binding protein 99.5 1.1E-13 3.7E-18 99.6 9.4 117 12-130 159-284 (416)
194 2qnr_A Septin-2, protein NEDD5 99.5 2.3E-14 7.9E-19 99.3 4.5 121 7-131 15-171 (301)
195 4fn5_A EF-G 1, elongation fact 99.5 4.5E-13 1.5E-17 102.2 11.1 119 8-130 11-152 (709)
196 1jal_A YCHF protein; nucleotid 99.4 2.5E-13 8.7E-18 95.9 7.3 85 10-94 2-108 (363)
197 1u0l_A Probable GTPase ENGC; p 99.4 2.1E-14 7.1E-19 99.5 1.1 99 25-132 32-132 (301)
198 2ohf_A Protein OLA1, GTP-bindi 99.4 1.8E-13 6.2E-18 97.6 5.8 90 8-97 20-131 (396)
199 3j25_A Tetracycline resistance 99.4 5.6E-14 1.9E-18 106.0 0.6 118 10-131 2-135 (638)
200 3zvr_A Dynamin-1; hydrolase, D 99.2 5E-11 1.7E-15 91.1 10.3 119 9-131 50-233 (772)
201 3p32_A Probable GTPase RV1496/ 99.2 3E-12 1E-16 90.5 2.6 62 58-130 171-232 (355)
202 2dby_A GTP-binding protein; GD 99.2 3.2E-11 1.1E-15 85.6 7.3 78 11-94 2-111 (368)
203 2www_A Methylmalonic aciduria 99.2 7.7E-11 2.6E-15 83.2 8.6 60 59-129 167-226 (349)
204 2wsm_A Hydrogenase expression/ 99.2 9E-12 3.1E-16 82.2 3.3 111 9-130 29-169 (221)
205 2hf9_A Probable hydrogenase ni 99.1 1E-13 3.5E-18 91.9 -8.7 29 9-37 37-65 (226)
206 2p67_A LAO/AO transport system 99.1 3.5E-11 1.2E-15 84.6 2.1 62 58-130 148-209 (341)
207 1ni3_A YCHF GTPase, YCHF GTP-b 99.1 3.8E-10 1.3E-14 80.6 7.1 87 8-94 18-127 (392)
208 1yrb_A ATP(GTP)binding protein 99.0 9.8E-10 3.4E-14 74.2 8.1 70 59-131 109-187 (262)
209 3ec1_A YQEH GTPase; atnos1, at 98.9 8.2E-11 2.8E-15 83.6 0.1 114 10-131 162-290 (369)
210 3h2y_A GTPase family protein; 98.9 2.1E-10 7.1E-15 81.5 1.4 114 10-130 160-288 (368)
211 3sop_A Neuronal-specific septi 98.9 9.1E-09 3.1E-13 70.2 7.5 115 10-130 2-155 (270)
212 2qm8_A GTPase/ATPase; G protei 98.8 3.3E-09 1.1E-13 74.5 4.7 61 58-129 147-207 (337)
213 2qag_B Septin-6, protein NEDD5 98.8 2.5E-08 8.6E-13 71.9 8.9 60 10-69 42-105 (427)
214 1puj_A YLQF, conserved hypothe 98.8 5E-09 1.7E-13 71.9 5.1 59 8-70 118-176 (282)
215 3cnl_A YLQF, putative uncharac 98.8 2.9E-09 9.9E-14 72.4 2.5 57 11-71 100-156 (262)
216 2j37_W Signal recognition part 98.7 1.9E-08 6.5E-13 74.0 5.6 116 8-130 99-255 (504)
217 2yv5_A YJEQ protein; hydrolase 98.6 8.9E-08 3E-12 66.3 6.9 60 69-131 66-126 (302)
218 3l82_B F-box only protein 4; T 98.5 1.7E-08 5.9E-13 66.1 1.5 64 67-130 110-178 (227)
219 1f5n_A Interferon-induced guan 98.4 4.8E-07 1.6E-11 67.8 5.4 64 7-71 35-103 (592)
220 1bif_A 6-phosphofructo-2-kinas 98.4 3.1E-08 1.1E-12 72.4 -1.1 102 8-111 37-148 (469)
221 1tq4_A IIGP1, interferon-induc 98.3 4.5E-06 1.5E-10 60.1 9.7 110 10-127 69-187 (413)
222 3l2o_B F-box only protein 4; s 98.3 2.2E-07 7.5E-12 63.7 2.0 65 66-130 194-263 (312)
223 3szr_A Interferon-induced GTP- 98.3 4E-06 1.4E-10 63.2 8.2 23 12-34 47-69 (608)
224 3dm5_A SRP54, signal recogniti 98.1 4.7E-06 1.6E-10 60.4 5.7 115 9-129 99-253 (443)
225 2v3c_C SRP54, signal recogniti 98.1 4.7E-06 1.6E-10 60.4 5.5 113 10-129 99-252 (432)
226 1ye8_A Protein THEP1, hypothet 97.8 1.7E-05 5.7E-10 50.7 3.5 22 12-33 2-23 (178)
227 3kl4_A SRP54, signal recogniti 97.7 1.7E-05 6E-10 57.4 3.2 115 9-129 96-252 (433)
228 3q5d_A Atlastin-1; G protein, 97.7 3.9E-05 1.3E-09 55.8 4.9 26 8-33 65-90 (447)
229 1j8m_F SRP54, signal recogniti 97.7 0.00012 4E-09 50.6 6.6 65 58-129 180-253 (297)
230 1kgd_A CASK, peripheral plasma 97.7 2.8E-05 9.6E-10 49.5 3.3 22 12-33 7-28 (180)
231 3h2y_A GTPase family protein; 97.6 2.5E-05 8.5E-10 55.5 2.8 57 68-130 55-111 (368)
232 1lvg_A Guanylate kinase, GMP k 97.6 3.4E-05 1.2E-09 50.0 3.3 22 11-32 5-26 (198)
233 1ex7_A Guanylate kinase; subst 97.6 8E-06 2.7E-10 52.7 0.0 21 13-33 4-24 (186)
234 1zp6_A Hypothetical protein AT 97.6 4E-05 1.4E-09 49.0 3.0 23 11-33 10-32 (191)
235 3tr0_A Guanylate kinase, GMP k 97.6 4.6E-05 1.6E-09 49.2 3.3 22 12-33 9-30 (205)
236 1knq_A Gluconate kinase; ALFA/ 97.6 8E-05 2.7E-09 47.0 4.1 23 10-32 8-30 (175)
237 3a00_A Guanylate kinase, GMP k 97.6 5E-05 1.7E-09 48.6 3.2 21 13-33 4-24 (186)
238 1znw_A Guanylate kinase, GMP k 97.6 5.1E-05 1.7E-09 49.4 3.2 22 12-33 22-43 (207)
239 3c8u_A Fructokinase; YP_612366 97.5 7.8E-05 2.7E-09 48.5 3.7 25 8-32 20-44 (208)
240 1s96_A Guanylate kinase, GMP k 97.5 6.4E-05 2.2E-09 49.6 3.3 24 11-34 17-40 (219)
241 1z6g_A Guanylate kinase; struc 97.5 6.7E-05 2.3E-09 49.3 3.2 22 12-33 25-46 (218)
242 3ney_A 55 kDa erythrocyte memb 97.5 8E-05 2.7E-09 48.4 3.3 24 10-33 19-42 (197)
243 1htw_A HI0065; nucleotide-bind 97.5 8.7E-05 3E-09 46.5 3.2 23 12-34 35-57 (158)
244 3tau_A Guanylate kinase, GMP k 97.5 8.8E-05 3E-09 48.4 3.4 24 10-33 8-31 (208)
245 1kag_A SKI, shikimate kinase I 97.5 9E-05 3.1E-09 46.6 3.3 23 11-33 5-27 (173)
246 3tif_A Uncharacterized ABC tra 97.4 7.5E-05 2.6E-09 49.8 2.9 23 12-34 33-55 (235)
247 1t9h_A YLOQ, probable GTPase E 97.4 3.1E-05 1.1E-09 53.7 1.0 24 11-34 174-197 (307)
248 4gp7_A Metallophosphoesterase; 97.4 7.7E-05 2.6E-09 47.1 2.7 18 12-29 11-28 (171)
249 2bdt_A BH3686; alpha-beta prot 97.4 9.8E-05 3.4E-09 47.2 3.2 21 12-32 4-24 (189)
250 2qor_A Guanylate kinase; phosp 97.4 0.0001 3.4E-09 47.8 3.3 23 11-33 13-35 (204)
251 1ly1_A Polynucleotide kinase; 97.4 0.00013 4.4E-09 46.0 3.7 22 11-32 3-24 (181)
252 3kb2_A SPBC2 prophage-derived 97.4 0.00011 3.6E-09 46.1 3.2 22 12-33 3-24 (173)
253 4eun_A Thermoresistant glucoki 97.4 0.00011 3.8E-09 47.5 3.3 23 10-32 29-51 (200)
254 2j41_A Guanylate kinase; GMP, 97.4 0.00011 3.7E-09 47.5 3.2 24 11-34 7-30 (207)
255 3lw7_A Adenylate kinase relate 97.4 0.00011 3.7E-09 46.0 3.0 19 12-30 3-21 (179)
256 3asz_A Uridine kinase; cytidin 97.4 0.00013 4.5E-09 47.3 3.4 25 9-33 5-29 (211)
257 2onk_A Molybdate/tungstate ABC 97.4 0.00012 4.2E-09 48.9 3.2 23 12-34 26-48 (240)
258 2pcj_A ABC transporter, lipopr 97.4 9.6E-05 3.3E-09 48.9 2.7 23 12-34 32-54 (224)
259 2cdn_A Adenylate kinase; phosp 97.4 0.00018 6.3E-09 46.4 3.9 26 7-32 17-42 (201)
260 2i3b_A HCR-ntpase, human cance 97.3 0.00013 4.5E-09 47.0 3.1 22 12-33 3-24 (189)
261 3ec1_A YQEH GTPase; atnos1, at 97.3 4.5E-05 1.5E-09 54.2 1.0 57 68-130 57-113 (369)
262 2bbw_A Adenylate kinase 4, AK4 97.3 0.00015 5E-09 48.4 3.4 22 10-31 27-48 (246)
263 1puj_A YLQF, conserved hypothe 97.3 0.00011 3.7E-09 50.4 2.8 58 65-130 5-65 (282)
264 1b0u_A Histidine permease; ABC 97.3 0.00012 4.1E-09 49.6 2.9 23 12-34 34-56 (262)
265 2rcn_A Probable GTPase ENGC; Y 97.3 0.00013 4.3E-09 51.7 3.1 24 12-35 217-240 (358)
266 3ec2_A DNA replication protein 97.3 0.00013 4.5E-09 46.2 2.9 24 10-33 38-61 (180)
267 1qhx_A CPT, protein (chloramph 97.3 0.00016 5.3E-09 45.7 3.3 22 11-32 4-25 (178)
268 3vaa_A Shikimate kinase, SK; s 97.3 0.00017 5.8E-09 46.6 3.5 22 11-32 26-47 (199)
269 3gfo_A Cobalt import ATP-bindi 97.3 0.00012 4.2E-09 49.9 2.9 23 12-34 36-58 (275)
270 1sgw_A Putative ABC transporte 97.3 0.00013 4.5E-09 47.9 2.9 23 12-34 37-59 (214)
271 2cbz_A Multidrug resistance-as 97.3 0.00013 4.5E-09 48.7 2.9 23 12-34 33-55 (237)
272 3t61_A Gluconokinase; PSI-biol 97.3 0.00016 5.4E-09 46.7 3.2 23 10-32 18-40 (202)
273 3cm0_A Adenylate kinase; ATP-b 97.3 0.00023 7.7E-09 45.2 3.8 23 10-32 4-26 (186)
274 2rhm_A Putative kinase; P-loop 97.3 0.0002 6.9E-09 45.7 3.5 23 10-32 5-27 (193)
275 1g6h_A High-affinity branched- 97.3 0.00014 4.8E-09 49.1 2.9 23 12-34 35-57 (257)
276 3b85_A Phosphate starvation-in 97.3 0.00014 4.6E-09 47.7 2.7 22 12-33 24-45 (208)
277 3fb4_A Adenylate kinase; psych 97.3 0.00019 6.5E-09 46.7 3.4 21 12-32 2-22 (216)
278 2v9p_A Replication protein E1; 97.3 0.00018 6.1E-09 49.8 3.4 23 11-33 127-149 (305)
279 3co5_A Putative two-component 97.3 0.00032 1.1E-08 43.0 4.2 24 10-33 27-50 (143)
280 2pze_A Cystic fibrosis transme 97.3 0.00015 5.2E-09 48.1 2.9 23 12-34 36-58 (229)
281 3umf_A Adenylate kinase; rossm 97.3 0.00029 9.9E-09 46.4 4.2 23 10-32 28-51 (217)
282 2olj_A Amino acid ABC transpor 97.3 0.00015 5.2E-09 49.1 2.9 23 12-34 52-74 (263)
283 2eyu_A Twitching motility prot 97.3 0.00017 5.9E-09 48.8 3.2 23 11-33 26-48 (261)
284 2ff7_A Alpha-hemolysin translo 97.3 0.00015 5.1E-09 48.7 2.9 23 12-34 37-59 (247)
285 2d2e_A SUFC protein; ABC-ATPas 97.3 0.00017 6E-09 48.4 3.2 22 12-33 31-52 (250)
286 2wwf_A Thymidilate kinase, put 97.3 0.00026 9E-09 45.8 4.0 24 9-32 9-32 (212)
287 1kht_A Adenylate kinase; phosp 97.3 0.00022 7.4E-09 45.4 3.5 22 11-32 4-25 (192)
288 2yvu_A Probable adenylyl-sulfa 97.3 0.00031 1.1E-08 44.7 4.2 26 7-32 10-35 (186)
289 3dl0_A Adenylate kinase; phosp 97.3 0.0002 6.9E-09 46.7 3.4 21 12-32 2-22 (216)
290 1mv5_A LMRA, multidrug resista 97.3 0.00017 5.9E-09 48.2 3.1 23 12-34 30-52 (243)
291 1y63_A LMAJ004144AAA protein; 97.3 0.00026 8.7E-09 45.2 3.8 25 9-33 9-33 (184)
292 4g1u_C Hemin import ATP-bindin 97.3 0.00015 5E-09 49.3 2.8 23 12-34 39-61 (266)
293 1ji0_A ABC transporter; ATP bi 97.3 0.00016 5.4E-09 48.3 2.9 23 12-34 34-56 (240)
294 2zu0_C Probable ATP-dependent 97.3 0.00018 6.3E-09 48.8 3.2 22 12-33 48-69 (267)
295 1cke_A CK, MSSA, protein (cyti 97.3 0.00023 7.8E-09 46.7 3.6 22 11-32 6-27 (227)
296 1tev_A UMP-CMP kinase; ploop, 97.3 0.00025 8.4E-09 45.2 3.7 23 10-32 3-25 (196)
297 1nks_A Adenylate kinase; therm 97.3 0.00018 6.2E-09 45.8 3.0 21 12-32 3-23 (194)
298 2qi9_C Vitamin B12 import ATP- 97.3 0.00017 5.7E-09 48.5 2.9 23 12-34 28-50 (249)
299 1vpl_A ABC transporter, ATP-bi 97.3 0.00017 5.7E-09 48.7 2.9 23 12-34 43-65 (256)
300 2ehv_A Hypothetical protein PH 97.2 0.00019 6.6E-09 47.6 3.2 20 12-31 32-51 (251)
301 4a74_A DNA repair and recombin 97.2 0.00018 6.1E-09 47.1 3.0 22 12-33 27-48 (231)
302 2jaq_A Deoxyguanosine kinase; 97.2 0.00023 8E-09 45.7 3.5 21 12-32 2-22 (205)
303 3tlx_A Adenylate kinase 2; str 97.2 0.00027 9.3E-09 47.2 3.8 24 9-32 28-51 (243)
304 1aky_A Adenylate kinase; ATP:A 97.2 0.00024 8.3E-09 46.5 3.6 23 10-32 4-26 (220)
305 2if2_A Dephospho-COA kinase; a 97.2 0.00022 7.4E-09 46.1 3.3 22 11-32 2-23 (204)
306 3uie_A Adenylyl-sulfate kinase 97.2 0.00028 9.6E-09 45.6 3.8 24 10-33 25-48 (200)
307 3be4_A Adenylate kinase; malar 97.2 0.00023 7.9E-09 46.6 3.4 25 8-32 3-27 (217)
308 3trf_A Shikimate kinase, SK; a 97.2 0.00026 8.7E-09 45.0 3.5 23 10-32 5-27 (185)
309 2plr_A DTMP kinase, probable t 97.2 0.0003 1E-08 45.5 3.8 23 10-32 4-26 (213)
310 2ihy_A ABC transporter, ATP-bi 97.2 0.00018 6.3E-09 49.1 2.9 23 12-34 49-71 (279)
311 2ixe_A Antigen peptide transpo 97.2 0.00018 6.2E-09 48.9 2.9 23 12-34 47-69 (271)
312 2ghi_A Transport protein; mult 97.2 0.00019 6.4E-09 48.6 2.9 22 12-33 48-69 (260)
313 2x8a_A Nuclear valosin-contain 97.2 0.00022 7.6E-09 48.5 3.2 21 13-33 47-67 (274)
314 1np6_A Molybdopterin-guanine d 97.2 0.00025 8.6E-09 45.1 3.3 23 11-33 7-29 (174)
315 1u0l_A Probable GTPase ENGC; p 97.2 0.00023 7.8E-09 49.1 3.3 24 12-35 171-194 (301)
316 1lw7_A Transcriptional regulat 97.2 0.00021 7.1E-09 50.5 3.1 24 10-33 170-193 (365)
317 1via_A Shikimate kinase; struc 97.2 0.00024 8.4E-09 44.8 3.1 21 12-32 6-26 (175)
318 1uf9_A TT1252 protein; P-loop, 97.2 0.00032 1.1E-08 45.1 3.7 27 7-33 5-31 (203)
319 2nq2_C Hypothetical ABC transp 97.2 0.0002 6.9E-09 48.2 2.9 23 12-34 33-55 (253)
320 1zak_A Adenylate kinase; ATP:A 97.2 0.00022 7.6E-09 46.7 3.0 24 9-32 4-27 (222)
321 2yz2_A Putative ABC transporte 97.2 0.00021 7E-09 48.5 2.9 23 12-34 35-57 (266)
322 1zd8_A GTP:AMP phosphotransfer 97.2 0.00027 9.1E-09 46.5 3.3 24 9-32 6-29 (227)
323 1jjv_A Dephospho-COA kinase; P 97.2 0.00031 1.1E-08 45.4 3.6 22 11-32 3-24 (206)
324 3sr0_A Adenylate kinase; phosp 97.2 0.0003 1E-08 45.9 3.4 21 12-32 2-22 (206)
325 1qf9_A UMP/CMP kinase, protein 97.2 0.00037 1.3E-08 44.3 3.8 23 10-32 6-28 (194)
326 3lnc_A Guanylate kinase, GMP k 97.2 0.00014 4.9E-09 48.0 1.9 22 12-33 29-51 (231)
327 2qt1_A Nicotinamide riboside k 97.2 0.0004 1.4E-08 44.9 4.0 26 8-33 19-44 (207)
328 2v54_A DTMP kinase, thymidylat 97.2 0.00038 1.3E-08 44.8 3.8 24 10-33 4-27 (204)
329 2yv5_A YJEQ protein; hydrolase 97.2 0.00026 9E-09 48.8 3.1 22 12-34 167-188 (302)
330 1ixz_A ATP-dependent metallopr 97.2 0.00029 9.9E-09 47.1 3.3 22 12-33 51-72 (254)
331 1gvn_B Zeta; postsegregational 97.1 0.00037 1.3E-08 47.7 3.9 25 8-32 31-55 (287)
332 2pjz_A Hypothetical protein ST 97.1 0.00028 9.4E-09 47.9 3.1 23 12-34 32-54 (263)
333 3fvq_A Fe(3+) IONS import ATP- 97.1 0.00025 8.4E-09 50.2 3.0 23 12-34 32-54 (359)
334 1e4v_A Adenylate kinase; trans 97.1 0.0003 1E-08 45.9 3.2 21 12-32 2-22 (214)
335 1jbk_A CLPB protein; beta barr 97.1 0.00036 1.2E-08 44.0 3.5 24 10-33 43-66 (195)
336 1ukz_A Uridylate kinase; trans 97.1 0.00056 1.9E-08 44.1 4.3 25 8-32 13-37 (203)
337 1t9h_A YLOQ, probable GTPase E 97.1 0.0011 3.8E-08 45.9 6.0 53 75-130 79-132 (307)
338 3aez_A Pantothenate kinase; tr 97.1 0.00045 1.5E-08 47.9 4.1 26 7-32 87-112 (312)
339 2c95_A Adenylate kinase 1; tra 97.1 0.00036 1.2E-08 44.5 3.4 23 10-32 9-31 (196)
340 2p5t_B PEZT; postsegregational 97.1 0.00038 1.3E-08 46.7 3.5 25 8-32 30-54 (253)
341 1z47_A CYSA, putative ABC-tran 97.1 0.00031 1.1E-08 49.6 3.2 23 12-34 43-65 (355)
342 2kjq_A DNAA-related protein; s 97.1 0.00026 8.8E-09 43.8 2.4 22 12-33 38-59 (149)
343 3iij_A Coilin-interacting nucl 97.1 0.00038 1.3E-08 44.0 3.3 23 10-32 11-33 (180)
344 2it1_A 362AA long hypothetical 97.1 0.00033 1.1E-08 49.6 3.2 23 12-34 31-53 (362)
345 2yyz_A Sugar ABC transporter, 97.1 0.00033 1.1E-08 49.6 3.2 23 12-34 31-53 (359)
346 3rlf_A Maltose/maltodextrin im 97.1 0.00034 1.2E-08 49.9 3.2 23 12-34 31-53 (381)
347 2jeo_A Uridine-cytidine kinase 97.1 0.00046 1.6E-08 46.0 3.7 23 10-32 25-47 (245)
348 3jvv_A Twitching mobility prot 97.1 0.00035 1.2E-08 49.4 3.2 22 12-33 125-146 (356)
349 2pt5_A Shikimate kinase, SK; a 97.1 0.00046 1.6E-08 43.0 3.5 21 12-32 2-22 (168)
350 1zcb_A G alpha I/13; GTP-bindi 97.1 0.00042 1.4E-08 49.1 3.5 24 8-31 31-54 (362)
351 2vli_A Antibiotic resistance p 97.1 0.00029 1E-08 44.5 2.5 24 9-32 4-27 (183)
352 1v43_A Sugar-binding transport 97.1 0.00038 1.3E-08 49.5 3.2 23 12-34 39-61 (372)
353 3tui_C Methionine import ATP-b 97.1 0.00038 1.3E-08 49.3 3.2 23 12-34 56-78 (366)
354 2ze6_A Isopentenyl transferase 97.1 0.00041 1.4E-08 46.6 3.3 21 12-32 3-23 (253)
355 1g29_1 MALK, maltose transport 97.1 0.00037 1.3E-08 49.5 3.2 23 12-34 31-53 (372)
356 1nn5_A Similar to deoxythymidy 97.1 0.00044 1.5E-08 44.8 3.4 23 10-32 9-31 (215)
357 2bbs_A Cystic fibrosis transme 97.0 0.0003 1E-08 48.3 2.6 23 12-34 66-88 (290)
358 2f1r_A Molybdopterin-guanine d 97.0 0.00019 6.7E-09 45.5 1.5 22 12-33 4-25 (171)
359 1rj9_A FTSY, signal recognitio 97.0 0.00042 1.4E-08 48.0 3.2 24 9-32 101-124 (304)
360 3a4m_A L-seryl-tRNA(SEC) kinas 97.0 0.00055 1.9E-08 46.1 3.7 23 10-32 4-26 (260)
361 3nh6_A ATP-binding cassette SU 97.0 0.00026 8.8E-09 49.1 2.1 22 12-33 82-103 (306)
362 1iy2_A ATP-dependent metallopr 97.0 0.00045 1.5E-08 46.9 3.3 22 12-33 75-96 (278)
363 1odf_A YGR205W, hypothetical 3 97.0 0.00073 2.5E-08 46.4 4.3 26 7-32 28-53 (290)
364 2bwj_A Adenylate kinase 5; pho 97.0 0.0004 1.4E-08 44.4 2.8 23 10-32 12-34 (199)
365 2xb4_A Adenylate kinase; ATP-b 97.0 0.00054 1.8E-08 45.1 3.5 21 12-32 2-22 (223)
366 1ak2_A Adenylate kinase isoenz 97.0 0.00058 2E-08 45.2 3.7 24 9-32 15-38 (233)
367 3tqc_A Pantothenate kinase; bi 97.0 0.0007 2.4E-08 47.2 4.1 25 8-32 90-114 (321)
368 1in4_A RUVB, holliday junction 97.0 0.00046 1.6E-08 48.2 3.2 22 12-33 53-74 (334)
369 3d31_A Sulfate/molybdate ABC t 97.0 0.0003 1E-08 49.5 2.3 23 12-34 28-50 (348)
370 2w0m_A SSO2452; RECA, SSPF, un 97.0 0.0005 1.7E-08 44.9 3.2 21 12-32 25-45 (235)
371 1rz3_A Hypothetical protein rb 97.0 0.0007 2.4E-08 43.8 3.8 25 8-32 20-44 (201)
372 3b9q_A Chloroplast SRP recepto 97.0 0.0005 1.7E-08 47.5 3.3 23 10-32 100-122 (302)
373 1lv7_A FTSH; alpha/beta domain 97.0 0.00063 2.2E-08 45.5 3.6 24 10-33 45-68 (257)
374 1e6c_A Shikimate kinase; phosp 97.0 0.00058 2E-08 42.7 3.3 21 12-32 4-24 (173)
375 2pbr_A DTMP kinase, thymidylat 97.0 0.00057 1.9E-08 43.5 3.2 21 12-32 2-22 (195)
376 2iyv_A Shikimate kinase, SK; t 97.0 0.00058 2E-08 43.3 3.2 21 12-32 4-24 (184)
377 1sq5_A Pantothenate kinase; P- 97.0 0.00072 2.4E-08 46.7 3.9 25 8-32 78-102 (308)
378 2z0h_A DTMP kinase, thymidylat 97.0 0.00058 2E-08 43.6 3.2 22 12-33 2-23 (197)
379 2p65_A Hypothetical protein PF 96.9 0.00046 1.6E-08 43.4 2.7 24 10-33 43-66 (187)
380 2ewv_A Twitching motility prot 96.9 0.00052 1.8E-08 48.8 3.2 23 11-33 137-159 (372)
381 3bos_A Putative DNA replicatio 96.9 0.00064 2.2E-08 44.6 3.4 24 10-33 52-75 (242)
382 3kta_A Chromosome segregation 96.9 0.00056 1.9E-08 43.3 3.0 21 12-32 28-48 (182)
383 3gd7_A Fusion complex of cysti 96.9 0.00049 1.7E-08 49.2 3.0 22 12-33 49-70 (390)
384 2pez_A Bifunctional 3'-phospho 96.9 0.00081 2.8E-08 42.5 3.7 23 10-32 5-27 (179)
385 4e22_A Cytidylate kinase; P-lo 96.9 0.00069 2.3E-08 45.5 3.5 22 10-31 27-48 (252)
386 1gtv_A TMK, thymidylate kinase 96.9 0.00021 7E-09 46.4 0.9 21 12-32 2-22 (214)
387 1xjc_A MOBB protein homolog; s 96.9 0.0007 2.4E-08 42.8 3.3 22 11-32 5-26 (169)
388 1vht_A Dephospho-COA kinase; s 96.9 0.00086 2.9E-08 43.7 3.8 23 10-32 4-26 (218)
389 3e70_C DPA, signal recognition 96.9 0.00087 3E-08 46.9 4.0 26 8-33 127-152 (328)
390 1uj2_A Uridine-cytidine kinase 96.9 0.00079 2.7E-08 45.1 3.7 25 8-32 20-44 (252)
391 2gza_A Type IV secretion syste 96.9 0.00052 1.8E-08 48.5 2.9 23 11-33 176-198 (361)
392 1p9r_A General secretion pathw 96.9 0.00062 2.1E-08 49.2 3.2 22 12-33 169-190 (418)
393 1oxx_K GLCV, glucose, ABC tran 96.9 0.0003 1E-08 49.6 1.5 23 12-34 33-55 (353)
394 1zuh_A Shikimate kinase; alpha 96.9 0.00087 3E-08 41.9 3.5 22 11-32 8-29 (168)
395 2w58_A DNAI, primosome compone 96.9 0.00082 2.8E-08 43.2 3.4 23 11-33 55-77 (202)
396 3r20_A Cytidylate kinase; stru 96.9 0.00085 2.9E-08 44.7 3.5 24 9-32 8-31 (233)
397 2pt7_A CAG-ALFA; ATPase, prote 96.9 0.00051 1.7E-08 48.0 2.5 23 12-34 173-195 (330)
398 2f6r_A COA synthase, bifunctio 96.9 0.001 3.5E-08 45.4 4.0 25 8-32 73-97 (281)
399 3t15_A Ribulose bisphosphate c 96.9 0.00077 2.6E-08 46.2 3.4 25 9-33 35-59 (293)
400 1cr0_A DNA primase/helicase; R 96.8 0.00068 2.3E-08 46.4 3.0 22 12-33 37-58 (296)
401 1tue_A Replication protein E1; 96.8 0.00067 2.3E-08 44.3 2.8 23 10-32 58-80 (212)
402 2cvh_A DNA repair and recombin 96.8 0.00081 2.8E-08 43.6 3.2 21 12-32 22-42 (220)
403 1n0w_A DNA repair protein RAD5 96.8 0.00088 3E-08 44.1 3.3 22 12-33 26-47 (243)
404 2qz4_A Paraplegin; AAA+, SPG7, 96.8 0.0011 3.6E-08 44.3 3.7 24 9-32 38-61 (262)
405 3nwj_A ATSK2; P loop, shikimat 96.8 0.00082 2.8E-08 45.2 3.1 22 11-32 49-70 (250)
406 2og2_A Putative signal recogni 96.8 0.00084 2.9E-08 47.5 3.3 23 10-32 157-179 (359)
407 3h4m_A Proteasome-activating n 96.8 0.00099 3.4E-08 45.1 3.5 24 10-33 51-74 (285)
408 3n70_A Transport activator; si 96.8 0.0011 3.9E-08 40.5 3.4 26 9-34 23-48 (145)
409 3b9p_A CG5977-PA, isoform A; A 96.8 0.00095 3.3E-08 45.5 3.4 24 10-33 54-77 (297)
410 2yhs_A FTSY, cell division pro 96.8 0.00086 2.9E-08 49.4 3.3 23 10-32 293-315 (503)
411 2vp4_A Deoxynucleoside kinase; 96.8 0.00055 1.9E-08 45.2 2.1 25 9-33 19-43 (230)
412 1m7g_A Adenylylsulfate kinase; 96.8 0.0013 4.3E-08 42.8 3.8 23 10-32 25-47 (211)
413 2chg_A Replication factor C sm 96.8 0.00098 3.3E-08 42.9 3.2 22 12-33 40-61 (226)
414 4b4t_M 26S protease regulatory 96.8 0.0011 3.7E-08 48.1 3.7 25 9-33 214-238 (434)
415 2oap_1 GSPE-2, type II secreti 96.8 0.00075 2.6E-08 49.9 2.9 23 12-34 262-284 (511)
416 3cwq_A Para family chromosome 96.8 0.0019 6.3E-08 42.1 4.5 67 58-129 67-134 (209)
417 1ltq_A Polynucleotide kinase; 96.8 0.00095 3.2E-08 45.7 3.3 22 11-32 3-24 (301)
418 3syl_A Protein CBBX; photosynt 96.8 0.0012 4.2E-08 45.2 3.8 25 8-32 65-89 (309)
419 1njg_A DNA polymerase III subu 96.8 0.001 3.4E-08 43.4 3.2 21 12-32 47-67 (250)
420 1f2t_A RAD50 ABC-ATPase; DNA d 96.7 0.0011 3.8E-08 40.9 3.2 19 13-31 26-44 (149)
421 1nij_A Hypothetical protein YJ 96.7 0.00075 2.6E-08 46.9 2.5 23 12-34 6-28 (318)
422 4eaq_A DTMP kinase, thymidylat 96.7 0.0016 5.6E-08 43.0 4.1 25 9-33 25-49 (229)
423 2npi_A Protein CLP1; CLP1-PCF1 96.7 0.00089 3E-08 48.9 3.0 24 11-34 139-162 (460)
424 1d2n_A N-ethylmaleimide-sensit 96.7 0.0016 5.5E-08 43.9 4.1 26 8-33 62-87 (272)
425 3cf0_A Transitional endoplasmi 96.7 0.001 3.5E-08 45.7 3.2 24 10-33 49-72 (301)
426 2obl_A ESCN; ATPase, hydrolase 96.7 0.0011 3.6E-08 46.8 3.3 24 11-34 72-95 (347)
427 4b4t_K 26S protease regulatory 96.7 0.0013 4.3E-08 47.7 3.6 24 10-33 206-229 (428)
428 4b4t_L 26S protease subunit RP 96.7 0.0013 4.6E-08 47.7 3.7 25 9-33 214-238 (437)
429 1svm_A Large T antigen; AAA+ f 96.7 0.0012 4.2E-08 47.0 3.2 23 10-32 169-191 (377)
430 1l8q_A Chromosomal replication 96.6 0.0012 4.3E-08 45.6 3.2 23 11-33 38-60 (324)
431 1q3t_A Cytidylate kinase; nucl 96.6 0.0018 6E-08 42.9 3.6 26 7-32 13-38 (236)
432 3eie_A Vacuolar protein sortin 96.6 0.0021 7.2E-08 44.5 4.1 25 9-33 50-74 (322)
433 2dpy_A FLII, flagellum-specifi 96.6 0.0014 4.7E-08 47.6 3.3 24 11-34 158-181 (438)
434 1nlf_A Regulatory protein REPA 96.6 0.0013 4.5E-08 44.6 3.0 21 12-32 32-52 (279)
435 3euj_A Chromosome partition pr 96.6 0.0014 4.8E-08 48.1 3.3 21 12-32 31-51 (483)
436 1yqt_A RNAse L inhibitor; ATP- 96.6 0.0015 5.1E-08 48.6 3.5 23 12-34 49-71 (538)
437 4fcw_A Chaperone protein CLPB; 96.6 0.0024 8.1E-08 43.7 4.3 24 10-33 47-70 (311)
438 1ofh_A ATP-dependent HSL prote 96.6 0.0016 5.5E-08 44.4 3.3 24 10-33 50-73 (310)
439 4b4t_J 26S protease regulatory 96.6 0.0016 5.4E-08 46.8 3.3 24 10-33 182-205 (405)
440 1xwi_A SKD1 protein; VPS4B, AA 96.5 0.0025 8.4E-08 44.3 4.1 24 10-33 45-68 (322)
441 2qby_A CDC6 homolog 1, cell di 96.5 0.0015 5.1E-08 45.8 3.0 24 10-33 45-68 (386)
442 2grj_A Dephospho-COA kinase; T 96.5 0.0024 8.3E-08 41.1 3.7 25 9-33 11-35 (192)
443 1sxj_E Activator 1 40 kDa subu 96.5 0.0018 6.1E-08 45.2 3.3 20 13-32 39-58 (354)
444 3foz_A TRNA delta(2)-isopenten 96.5 0.0025 8.7E-08 44.2 3.9 26 8-33 8-33 (316)
445 3zvl_A Bifunctional polynucleo 96.5 0.0026 8.9E-08 45.8 4.2 24 9-32 257-280 (416)
446 3ozx_A RNAse L inhibitor; ATP 96.5 0.0015 5E-08 48.7 2.9 23 12-34 27-49 (538)
447 4ido_A Atlastin-1; GTPase, GTP 96.5 0.0064 2.2E-07 44.3 6.1 64 9-72 66-153 (457)
448 1fnn_A CDC6P, cell division co 96.5 0.0018 6.3E-08 45.5 3.3 22 12-33 46-67 (389)
449 1sxj_C Activator 1 40 kDa subu 96.5 0.0018 6.2E-08 45.1 3.2 21 13-33 49-69 (340)
450 3b60_A Lipid A export ATP-bind 96.5 0.0016 5.3E-08 48.9 2.9 22 12-33 371-392 (582)
451 3j16_B RLI1P; ribosome recycli 96.5 0.0018 6.2E-08 48.9 3.2 23 12-34 105-127 (608)
452 3b5x_A Lipid A export ATP-bind 96.5 0.0018 6.2E-08 48.6 3.2 22 12-33 371-392 (582)
453 3qf7_A RAD50; ABC-ATPase, ATPa 96.5 0.0019 6.6E-08 45.7 3.2 19 13-31 26-44 (365)
454 2ga8_A Hypothetical 39.9 kDa p 96.4 0.003 1E-07 44.6 4.1 24 9-32 23-46 (359)
455 2dr3_A UPF0273 protein PH0284; 96.4 0.0021 7.1E-08 42.4 3.0 21 12-32 25-45 (247)
456 3ake_A Cytidylate kinase; CMP 96.4 0.0024 8.2E-08 41.0 3.2 21 12-32 4-24 (208)
457 4b4t_I 26S protease regulatory 96.4 0.0026 9.1E-08 46.0 3.5 24 10-33 216-239 (437)
458 1sxj_D Activator 1 41 kDa subu 96.4 0.0023 8E-08 44.5 3.2 21 13-33 61-81 (353)
459 3te6_A Regulatory protein SIR3 96.4 0.002 6.7E-08 44.9 2.8 25 9-33 44-68 (318)
460 2r62_A Cell division protease 96.4 0.00094 3.2E-08 44.9 1.1 22 12-33 46-67 (268)
461 2v1u_A Cell division control p 96.4 0.002 6.7E-08 45.2 2.8 25 9-33 43-67 (387)
462 3ozx_A RNAse L inhibitor; ATP 96.4 0.002 6.9E-08 48.0 2.9 23 12-34 296-318 (538)
463 1c9k_A COBU, adenosylcobinamid 96.4 0.0025 8.6E-08 40.7 3.0 21 13-33 2-22 (180)
464 2yl4_A ATP-binding cassette SU 96.4 0.0016 5.6E-08 48.9 2.4 22 12-33 372-393 (595)
465 1yqt_A RNAse L inhibitor; ATP- 96.4 0.0026 8.8E-08 47.4 3.5 23 12-34 314-336 (538)
466 4b4t_H 26S protease regulatory 96.3 0.0024 8.3E-08 46.6 3.2 25 9-33 242-266 (467)
467 3cnl_A YLQF, putative uncharac 96.3 0.00075 2.6E-08 45.6 0.5 55 66-130 4-61 (262)
468 2qp9_X Vacuolar protein sortin 96.3 0.0025 8.6E-08 44.9 3.2 24 10-33 84-107 (355)
469 3uk6_A RUVB-like 2; hexameric 96.3 0.0025 8.6E-08 44.7 3.2 23 11-33 71-93 (368)
470 1vma_A Cell division protein F 96.3 0.0027 9.2E-08 44.0 3.3 23 10-32 104-126 (306)
471 2px0_A Flagellar biosynthesis 96.3 0.0024 8.1E-08 44.0 3.0 23 10-32 105-127 (296)
472 3bk7_A ABC transporter ATP-bin 96.3 0.0024 8.3E-08 48.2 3.2 23 12-34 384-406 (607)
473 3hws_A ATP-dependent CLP prote 96.3 0.0037 1.3E-07 44.0 4.0 25 9-33 50-74 (363)
474 3qf4_B Uncharacterized ABC tra 96.3 0.0019 6.5E-08 48.7 2.6 22 12-33 383-404 (598)
475 3qks_A DNA double-strand break 96.3 0.0029 1E-07 41.0 3.2 19 13-31 26-44 (203)
476 3bk7_A ABC transporter ATP-bin 96.3 0.0023 7.7E-08 48.4 2.9 23 12-34 119-141 (607)
477 3pxg_A Negative regulator of g 96.3 0.0027 9.2E-08 46.4 3.2 24 10-33 201-224 (468)
478 3pfi_A Holliday junction ATP-d 96.3 0.0028 9.6E-08 44.0 3.2 24 10-33 55-78 (338)
479 3m6a_A ATP-dependent protease 96.3 0.0026 8.9E-08 47.4 3.2 23 11-33 109-131 (543)
480 1um8_A ATP-dependent CLP prote 96.3 0.0031 1.1E-07 44.6 3.4 24 10-33 72-95 (376)
481 2qmh_A HPR kinase/phosphorylas 96.3 0.0031 1.1E-07 41.0 3.1 25 10-34 34-58 (205)
482 3crm_A TRNA delta(2)-isopenten 96.3 0.0039 1.3E-07 43.5 3.8 23 11-33 6-28 (323)
483 1pzn_A RAD51, DNA repair and r 96.3 0.0026 9E-08 44.8 3.0 22 12-33 133-154 (349)
484 2h92_A Cytidylate kinase; ross 96.3 0.0031 1.1E-07 41.0 3.2 23 10-32 3-25 (219)
485 2bjv_A PSP operon transcriptio 96.3 0.0034 1.2E-07 42.1 3.4 25 10-34 29-53 (265)
486 2qgz_A Helicase loader, putati 96.3 0.0034 1.2E-07 43.4 3.4 24 10-33 152-175 (308)
487 3d8b_A Fidgetin-like protein 1 96.2 0.0036 1.2E-07 44.1 3.6 25 9-33 116-140 (357)
488 3j16_B RLI1P; ribosome recycli 96.2 0.0031 1E-07 47.7 3.2 23 13-35 381-403 (608)
489 2z4s_A Chromosomal replication 96.2 0.0031 1.1E-07 45.7 3.2 23 11-33 131-153 (440)
490 3gmt_A Adenylate kinase; ssgci 96.2 0.0041 1.4E-07 41.3 3.5 23 10-32 8-30 (230)
491 2dhr_A FTSH; AAA+ protein, hex 96.2 0.0031 1.1E-07 46.5 3.2 22 12-33 66-87 (499)
492 2qby_B CDC6 homolog 3, cell di 96.2 0.003 1E-07 44.4 3.0 23 11-33 46-68 (384)
493 2ce7_A Cell division protein F 96.2 0.0034 1.2E-07 46.1 3.3 23 11-33 50-72 (476)
494 2qen_A Walker-type ATPase; unk 96.2 0.0035 1.2E-07 43.3 3.3 22 12-33 33-54 (350)
495 4a82_A Cystic fibrosis transme 96.2 0.0016 5.4E-08 48.9 1.5 22 12-33 369-390 (578)
496 3u61_B DNA polymerase accessor 96.2 0.05 1.7E-06 37.4 9.0 21 13-33 51-71 (324)
497 2ocp_A DGK, deoxyguanosine kin 96.2 0.0044 1.5E-07 41.0 3.5 23 11-33 3-25 (241)
498 2r44_A Uncharacterized protein 96.1 0.0025 8.6E-08 44.2 2.3 22 12-33 48-69 (331)
499 3pvs_A Replication-associated 96.1 0.004 1.4E-07 45.3 3.4 23 11-33 51-73 (447)
500 1p5z_B DCK, deoxycytidine kina 96.1 0.0023 8E-08 43.0 2.0 26 8-33 22-47 (263)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=100.00 E-value=4.1e-35 Score=194.88 Aligned_cols=138 Identities=42% Similarity=0.766 Sum_probs=113.0
Q ss_pred CCCCCC---CcceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccch
Q 032487 1 MATTGN---KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAP 77 (139)
Q Consensus 1 ~~~~~~---~~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~ 77 (139)
||..++ +.+.+||+|+|++|||||||+++|....+...+.+|++.++..+.+..++..+.+++|||+|++.+..++.
T Consensus 1 ms~~~~~~~P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~ 80 (216)
T 4dkx_A 1 MSTGGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIP 80 (216)
T ss_dssp ------------CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHH
T ss_pred CCCCCCCCCCCCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHH
Confidence 444443 45679999999999999999999999999988999999999898888898899999999999999999999
Q ss_pred hhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCCcCCCcccc
Q 032487 78 MYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEAS 138 (139)
Q Consensus 78 ~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~~~v~~~e~ 138 (139)
.++++++++++|||++++.+|+.+..|+..+......+.|++|||||+|+.+.++|+.+|+
T Consensus 81 ~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~ 141 (216)
T 4dkx_A 81 SYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEG 141 (216)
T ss_dssp HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHH
T ss_pred HHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHH
Confidence 9999999999999999999999999999999887677899999999999999999988775
No 2
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.98 E-value=1e-30 Score=168.45 Aligned_cols=137 Identities=93% Similarity=1.314 Sum_probs=117.7
Q ss_pred CCCCCCCcceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhh
Q 032487 1 MATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYY 80 (139)
Q Consensus 1 ~~~~~~~~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~ 80 (139)
|+.++.+...+||+++|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..++
T Consensus 3 m~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~ 82 (181)
T 2efe_B 3 MAAAGNKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYY 82 (181)
T ss_dssp -------CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHH
T ss_pred ccCCCCCccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHh
Confidence 55666778899999999999999999999999988877778888888888888888889999999999999999999999
Q ss_pred cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCCcCCCccc
Q 032487 81 RGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEA 137 (139)
Q Consensus 81 ~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~~~v~~~e 137 (139)
+.+|++++|||++++.+++.+..|+..+......+.|+++|+||+|+.+.++++.++
T Consensus 83 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~ 139 (181)
T 2efe_B 83 RGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAED 139 (181)
T ss_dssp TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHH
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHH
Confidence 999999999999999999999999999988766789999999999998776665543
No 3
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.97 E-value=5.3e-30 Score=163.30 Aligned_cols=132 Identities=72% Similarity=1.091 Sum_probs=117.8
Q ss_pred CCcceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCE
Q 032487 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 85 (139)
Q Consensus 6 ~~~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ 85 (139)
.+...+||+++|++|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||++.+...+..++..+|+
T Consensus 2 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~ 81 (170)
T 1r2q_A 2 NKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQA 81 (170)
T ss_dssp CEEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSE
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCE
Confidence 35678999999999999999999999988877777888888888888888888999999999999999999999999999
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCCcCCCccc
Q 032487 86 AIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEA 137 (139)
Q Consensus 86 ~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~~~v~~~e 137 (139)
+++|||++++.+++.+..|+..+.....+..|+++|+||+|+.+++.++.++
T Consensus 82 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~ 133 (170)
T 1r2q_A 82 AIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQE 133 (170)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHH
Confidence 9999999999999999999999988766789999999999998776665543
No 4
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.97 E-value=1.8e-30 Score=167.86 Aligned_cols=131 Identities=37% Similarity=0.724 Sum_probs=92.0
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEE
Q 032487 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 86 (139)
Q Consensus 7 ~~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 86 (139)
....+||+++|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++++|++
T Consensus 5 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 84 (183)
T 2fu5_C 5 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 84 (183)
T ss_dssp CSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEE
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEE
Confidence 45689999999999999999999998887777778888888888888888889999999999999999999999999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCCcCCCccc
Q 032487 87 IIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEA 137 (139)
Q Consensus 87 i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~~~v~~~e 137 (139)
++|||++++.+++.+..|+..+......+.|+++|+||+|+.+.++++.++
T Consensus 85 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~ 135 (183)
T 2fu5_C 85 MLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKER 135 (183)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHH
Confidence 999999999999999999999988766789999999999998877666544
No 5
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.97 E-value=6.4e-30 Score=166.55 Aligned_cols=133 Identities=38% Similarity=0.724 Sum_probs=115.0
Q ss_pred CCCcceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCC
Q 032487 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAA 84 (139)
Q Consensus 5 ~~~~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~ 84 (139)
......+||+++|++|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+||++|++.+...+..++.++|
T Consensus 16 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 95 (191)
T 2a5j_A 16 PRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAA 95 (191)
T ss_dssp CTTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCS
T ss_pred cccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCC
Confidence 44577899999999999999999999998887777778888888888888888899999999999999999999999999
Q ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCCcCCCccc
Q 032487 85 AAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEA 137 (139)
Q Consensus 85 ~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~~~v~~~e 137 (139)
++++|||++++.+++.+..|+..+......+.|+++|+||+|+.+.++++.++
T Consensus 96 ~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~ 148 (191)
T 2a5j_A 96 GALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREE 148 (191)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHH
Confidence 99999999999999999999999988766789999999999998776666544
No 6
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.97 E-value=2.5e-30 Score=169.96 Aligned_cols=132 Identities=42% Similarity=0.725 Sum_probs=109.6
Q ss_pred CCcceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCE
Q 032487 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 85 (139)
Q Consensus 6 ~~~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ 85 (139)
.....+||+++|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||++|++.+...+..+++++|+
T Consensus 25 ~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 104 (201)
T 2hup_A 25 QYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANG 104 (201)
T ss_dssp -CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSE
T ss_pred ccccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCE
Confidence 34667999999999999999999999988877777888877878888888878999999999999999999999999999
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCCcCCCccc
Q 032487 86 AIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEA 137 (139)
Q Consensus 86 ~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~~~v~~~e 137 (139)
+++|||++++.+++.+..|+..+......+.|+++|+||+|+.+.++++.++
T Consensus 105 iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~ 156 (201)
T 2hup_A 105 AILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAE 156 (201)
T ss_dssp EEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHH
Confidence 9999999999999999999999988766789999999999998877666554
No 7
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.97 E-value=1.5e-29 Score=161.31 Aligned_cols=131 Identities=51% Similarity=0.854 Sum_probs=117.9
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEE
Q 032487 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 86 (139)
Q Consensus 7 ~~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 86 (139)
..+.+||+++|++|+|||||+++|.+..+...+.++.+.++.......++....+.+||+||.+.+...+..++..+|++
T Consensus 3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~ 82 (170)
T 1z0j_A 3 ALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAA 82 (170)
T ss_dssp SEEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEE
Confidence 45679999999999999999999999988777788888888888888888889999999999999999999999999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCCcCCCccc
Q 032487 87 IIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEA 137 (139)
Q Consensus 87 i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~~~v~~~e 137 (139)
++|||++++.+++.+..|+..+.....+..|+++|+||+|+.+.+++..++
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~ 133 (170)
T 1z0j_A 83 IIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERD 133 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHH
Confidence 999999999999999999999988767789999999999998876665543
No 8
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=4.6e-30 Score=168.88 Aligned_cols=131 Identities=41% Similarity=0.728 Sum_probs=118.2
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEE
Q 032487 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 86 (139)
Q Consensus 7 ~~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 86 (139)
....+||+++|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||++|++.+...+..+++.+|++
T Consensus 23 ~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~ 102 (201)
T 2ew1_A 23 YDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANAL 102 (201)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEE
T ss_pred cccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEE
Confidence 45679999999999999999999999988877888888888888888888889999999999999999889999999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCCcCCCccc
Q 032487 87 IIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEA 137 (139)
Q Consensus 87 i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~~~v~~~e 137 (139)
++|||++++.+++.+..|+..+........|+++|+||+|+.+.++++.++
T Consensus 103 i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~ 153 (201)
T 2ew1_A 103 ILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQR 153 (201)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHH
Confidence 999999999999999999999988766789999999999998777666544
No 9
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.97 E-value=1.1e-29 Score=163.48 Aligned_cols=134 Identities=39% Similarity=0.683 Sum_probs=115.0
Q ss_pred CCCCCcceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcC
Q 032487 3 TTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82 (139)
Q Consensus 3 ~~~~~~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~ 82 (139)
+.......+||+++|++|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||++.+...+..++..
T Consensus 2 m~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 81 (181)
T 3tw8_B 2 MARDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRG 81 (181)
T ss_dssp ----CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTT
T ss_pred CccccCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhcc
Confidence 34456778999999999999999999999988877778888888888888888888999999999999999999999999
Q ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCCcCCCccc
Q 032487 83 AAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEA 137 (139)
Q Consensus 83 ~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~~~v~~~e 137 (139)
+|++++|||++++.+++.+..|+..+... ....|+++|+||+|+.+.+.++.++
T Consensus 82 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~ 135 (181)
T 3tw8_B 82 THGVIVVYDVTSAESFVNVKRWLHEINQN-CDDVCRILVGNKNDDPERKVVETED 135 (181)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHH-CTTSEEEEEEECTTCGGGCCSCHHH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHh-CCCCCEEEEEECCCCchhcccCHHH
Confidence 99999999999999999999999999876 3579999999999998877665443
No 10
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.97 E-value=1.3e-29 Score=165.21 Aligned_cols=132 Identities=42% Similarity=0.727 Sum_probs=119.6
Q ss_pred CCcceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCE
Q 032487 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 85 (139)
Q Consensus 6 ~~~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ 85 (139)
.....+||+++|++|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||++.+...+..+++.+|+
T Consensus 12 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 91 (196)
T 3tkl_A 12 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 91 (196)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSE
T ss_pred ccccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCE
Confidence 34668999999999999999999999998887788888888888888888888999999999999999999999999999
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCCcCCCccc
Q 032487 86 AIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEA 137 (139)
Q Consensus 86 ~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~~~v~~~e 137 (139)
+++|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.++.++
T Consensus 92 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~ 143 (196)
T 3tkl_A 92 IIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTT 143 (196)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHH
Confidence 9999999999999999999999988877789999999999998877766543
No 11
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.97 E-value=7.4e-30 Score=165.19 Aligned_cols=134 Identities=38% Similarity=0.680 Sum_probs=118.9
Q ss_pred CCCCcceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCC
Q 032487 4 TGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGA 83 (139)
Q Consensus 4 ~~~~~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~ 83 (139)
+......+||+++|++|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||++.+...+..++..+
T Consensus 4 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 83 (186)
T 2bme_A 4 SETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGA 83 (186)
T ss_dssp CCCCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTC
T ss_pred ccccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcC
Confidence 34456789999999999999999999999988877788888888888888888888999999999999999889999999
Q ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCCcCCCccc
Q 032487 84 AAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEA 137 (139)
Q Consensus 84 ~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~~~v~~~e 137 (139)
|++++|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.++.++
T Consensus 84 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~ 137 (186)
T 2bme_A 84 AGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLE 137 (186)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHH
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHH
Confidence 999999999999999999999999888766789999999999998776666543
No 12
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.97 E-value=1.7e-29 Score=166.25 Aligned_cols=132 Identities=42% Similarity=0.717 Sum_probs=118.7
Q ss_pred CCcceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCE
Q 032487 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 85 (139)
Q Consensus 6 ~~~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ 85 (139)
.....+||+++|++|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||++.+...+..++..+|+
T Consensus 4 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 83 (206)
T 2bcg_Y 4 EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHG 83 (206)
T ss_dssp CCSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSE
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCE
Confidence 34678999999999999999999999998887778888888888888888888899999999999999999999999999
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCCcCCCccc
Q 032487 86 AIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEA 137 (139)
Q Consensus 86 ~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~~~v~~~e 137 (139)
+++|||++++.+++.+..|+..+........|+++|+||+|+.+.+.++.++
T Consensus 84 vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~ 135 (206)
T 2bcg_Y 84 IIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDV 135 (206)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHH
Confidence 9999999999999999999999988766789999999999998877665543
No 13
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.97 E-value=4.8e-30 Score=163.72 Aligned_cols=132 Identities=42% Similarity=0.788 Sum_probs=109.6
Q ss_pred CCcceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCE
Q 032487 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 85 (139)
Q Consensus 6 ~~~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ 85 (139)
+....+||+++|++|+|||||++++.+..+...+.++.+.++....+..++..+.+.+||+||++.+...+..+++.+|+
T Consensus 2 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 81 (170)
T 1z08_A 2 SRAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNG 81 (170)
T ss_dssp --CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSE
T ss_pred CCCcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCE
Confidence 34678999999999999999999999988877777888888877888888888999999999999999998999999999
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCCcCCCccc
Q 032487 86 AIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEA 137 (139)
Q Consensus 86 ~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~~~v~~~e 137 (139)
+++|||++++.+++.+..|+..+......+.|+++|+||+|+.+.++++.++
T Consensus 82 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~ 133 (170)
T 1z08_A 82 AILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQE 133 (170)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHHH
Confidence 9999999999999999999999887655679999999999998876666543
No 14
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.97 E-value=1.3e-29 Score=162.83 Aligned_cols=132 Identities=41% Similarity=0.728 Sum_probs=117.9
Q ss_pred CCcceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCE
Q 032487 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 85 (139)
Q Consensus 6 ~~~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ 85 (139)
.....+||+++|.+|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||++.+...+..+++.+|+
T Consensus 11 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 90 (179)
T 1z0f_A 11 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAG 90 (179)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSE
T ss_pred ccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCE
Confidence 45678999999999999999999999988877777888888888888888888999999999999999999999999999
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCCcCCCccc
Q 032487 86 AIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEA 137 (139)
Q Consensus 86 ~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~~~v~~~e 137 (139)
+++|||++++.+++.+..|+..+......+.|+++|+||+|+.+.++++.++
T Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~ 142 (179)
T 1z0f_A 91 ALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEE 142 (179)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHH
T ss_pred EEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHH
Confidence 9999999999999999999999988766789999999999998776665543
No 15
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.97 E-value=3e-29 Score=163.08 Aligned_cols=130 Identities=39% Similarity=0.689 Sum_probs=116.5
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEE
Q 032487 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 86 (139)
Q Consensus 7 ~~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 86 (139)
....+||+++|++|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+||++|++.+...+..++..+|++
T Consensus 19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 98 (189)
T 2gf9_A 19 SDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGF 98 (189)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEE
T ss_pred cCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEE
Confidence 45679999999999999999999999988777778888888778888888889999999999999999999999999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCCcCCCcc
Q 032487 87 IIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAE 136 (139)
Q Consensus 87 i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~~~v~~~ 136 (139)
++|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.++.+
T Consensus 99 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~ 148 (189)
T 2gf9_A 99 LLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAE 148 (189)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHH
Confidence 99999999999999999999998876678999999999999877666544
No 16
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=1.3e-29 Score=165.31 Aligned_cols=132 Identities=56% Similarity=0.878 Sum_probs=117.2
Q ss_pred CCcceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCE
Q 032487 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 85 (139)
Q Consensus 6 ~~~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ 85 (139)
...+.+||+++|++|+|||||+++|.+..+...+.++.+.++....+..++....+.+||+||++.+...+..++..+|+
T Consensus 19 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 98 (192)
T 2fg5_A 19 SAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAA 98 (192)
T ss_dssp --CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSE
T ss_pred ccCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCE
Confidence 44678999999999999999999999998877778888888888888888888999999999999999999999999999
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCCcCCCccc
Q 032487 86 AIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEA 137 (139)
Q Consensus 86 ~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~~~v~~~e 137 (139)
+++|||++++.+++.+..|+..+........|+++|+||+|+.+.+.++.++
T Consensus 99 iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~ 150 (192)
T 2fg5_A 99 AVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKD 150 (192)
T ss_dssp EEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHH
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHH
Confidence 9999999999999999999999988766789999999999998766665543
No 17
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.97 E-value=2.8e-29 Score=159.94 Aligned_cols=128 Identities=57% Similarity=0.942 Sum_probs=114.4
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEEEE
Q 032487 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAII 88 (139)
Q Consensus 9 ~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 88 (139)
+.+||+++|++|+|||||++++.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++++|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV 81 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence 46899999999999999999999988877778888888888888888888999999999999999999999999999999
Q ss_pred EEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCC---cCCCcc
Q 032487 89 VYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDA---RKVTAE 136 (139)
Q Consensus 89 v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~---~~v~~~ 136 (139)
|||++++.+++.+..|+..+......+.|+++|+||+|+.+. +++..+
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~ 132 (170)
T 1ek0_A 82 VYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVARE 132 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHH
T ss_pred EEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHH
Confidence 999999999999999999998876678999999999999765 444433
No 18
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.97 E-value=4.8e-30 Score=167.42 Aligned_cols=134 Identities=34% Similarity=0.656 Sum_probs=111.7
Q ss_pred CCCCcceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCC
Q 032487 4 TGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGA 83 (139)
Q Consensus 4 ~~~~~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~ 83 (139)
++.....+||+++|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||++|++.+...+..++..+
T Consensus 20 p~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~ 99 (192)
T 2il1_A 20 PRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSA 99 (192)
T ss_dssp --CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHC
T ss_pred CcccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCC
Confidence 34456789999999999999999999999887777778888888888888888889999999999999999889999999
Q ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCCcCCCccc
Q 032487 84 AAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEA 137 (139)
Q Consensus 84 ~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~~~v~~~e 137 (139)
|++++|||++++.+++.+..|+..+......+.|+++|+||+|+.+.++++.++
T Consensus 100 d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~~ 153 (192)
T 2il1_A 100 KGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQ 153 (192)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHH
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHH
Confidence 999999999999999999999999988766789999999999998877666543
No 19
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=3.3e-29 Score=161.25 Aligned_cols=134 Identities=38% Similarity=0.698 Sum_probs=109.3
Q ss_pred CCCCcceeEEEEEcCCCCcHHHHHHHHHhCCCC-cccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcC
Q 032487 4 TGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFI-EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82 (139)
Q Consensus 4 ~~~~~~~~ki~i~G~~~~GKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~ 82 (139)
.+.....+||+++|++|+|||||+++|.+..+. ..+.++.+.++....+..++..+.+.+||+||++.+...+..++..
T Consensus 4 ~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ 83 (180)
T 2g6b_A 4 VDFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRD 83 (180)
T ss_dssp -CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGG
T ss_pred cccCCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccC
Confidence 345677899999999999999999999998875 3466777877777777788888899999999999999999999999
Q ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCCcCCCccc
Q 032487 83 AAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEA 137 (139)
Q Consensus 83 ~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~~~v~~~e 137 (139)
+|++++|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.++.++
T Consensus 84 ~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~ 138 (180)
T 2g6b_A 84 AHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKRED 138 (180)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHH
Confidence 9999999999999999999999999988766789999999999998876665543
No 20
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.97 E-value=2e-29 Score=164.29 Aligned_cols=132 Identities=39% Similarity=0.751 Sum_probs=117.3
Q ss_pred CCcceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCE
Q 032487 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 85 (139)
Q Consensus 6 ~~~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ 85 (139)
.....+||+++|++|+|||||+++|.+..+...+.++.+.++....+..++....+.+||+||++.+...+..++..+|+
T Consensus 21 ~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 100 (193)
T 2oil_A 21 DYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVG 100 (193)
T ss_dssp CCSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCE
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCE
Confidence 34668999999999999999999999988877777888888888888888888999999999999999999999999999
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCCcCCCccc
Q 032487 86 AIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEA 137 (139)
Q Consensus 86 ~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~~~v~~~e 137 (139)
+++|||++++.+++.+..|+..+........|+++|+||+|+.+.+.+..++
T Consensus 101 vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~ 152 (193)
T 2oil_A 101 ALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEE 152 (193)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHH
Confidence 9999999999999999999999987656789999999999998776665443
No 21
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.97 E-value=1.8e-29 Score=162.19 Aligned_cols=131 Identities=42% Similarity=0.769 Sum_probs=116.7
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEE
Q 032487 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 86 (139)
Q Consensus 7 ~~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 86 (139)
....+||+++|++|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||++.+...+..++.++|++
T Consensus 11 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~ 90 (179)
T 2y8e_A 11 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVA 90 (179)
T ss_dssp -CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEE
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEE
Confidence 35679999999999999999999999888777788888888888888888888999999999999999999999999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCCcCCCccc
Q 032487 87 IIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEA 137 (139)
Q Consensus 87 i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~~~v~~~e 137 (139)
++|||++++.+++.+..|+..+......+.|+++|+||+|+.+.++++.++
T Consensus 91 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~ 141 (179)
T 2y8e_A 91 VVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEE 141 (179)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHH
Confidence 999999999999999999999887656789999999999998877666543
No 22
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.97 E-value=4.3e-29 Score=163.87 Aligned_cols=130 Identities=37% Similarity=0.673 Sum_probs=116.5
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEE
Q 032487 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 86 (139)
Q Consensus 7 ~~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 86 (139)
....+||+++|++|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||++.+...+..++..+|++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 84 (203)
T 1zbd_A 5 FDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGF 84 (203)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEE
T ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEE
Confidence 35679999999999999999999999988777778888888888888888889999999999999999999999999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCCcCCCcc
Q 032487 87 IIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAE 136 (139)
Q Consensus 87 i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~~~v~~~ 136 (139)
++|||++++.+++.+..|+..+........|+++|+||+|+.+.+.++.+
T Consensus 85 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~ 134 (203)
T 1zbd_A 85 ILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSE 134 (203)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHH
Confidence 99999999999999999999998876678999999999999887666544
No 23
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.97 E-value=2.8e-29 Score=163.18 Aligned_cols=132 Identities=36% Similarity=0.666 Sum_probs=115.0
Q ss_pred CCcceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCccccc-ccchhhhcCCC
Q 032487 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYH-SLAPMYYRGAA 84 (139)
Q Consensus 6 ~~~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~-~~~~~~~~~~~ 84 (139)
...+.+||+++|.+|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+||++|++.+. ..+..+++.+|
T Consensus 16 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d 95 (189)
T 1z06_A 16 SRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVH 95 (189)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCC
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCC
Confidence 34567999999999999999999999988887778888888888888888888999999999999888 78888999999
Q ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCCCCcCCcCCCccc
Q 032487 85 AAIIVYDITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARKVTAEA 137 (139)
Q Consensus 85 ~~i~v~~~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~~k~D~~~~~~v~~~e 137 (139)
++++|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.++++.++
T Consensus 96 ~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~ 149 (189)
T 1z06_A 96 AVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDL 149 (189)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHH
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHH
Confidence 9999999999999999999999988764 4679999999999998776666543
No 24
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.97 E-value=5.2e-29 Score=160.94 Aligned_cols=131 Identities=31% Similarity=0.528 Sum_probs=115.1
Q ss_pred CCcceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCE
Q 032487 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 85 (139)
Q Consensus 6 ~~~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ 85 (139)
.+...+||+++|++|+|||||+++|.+..+...+.++.+..+ ......++..+.+.+||++|++.+...+..+++++|+
T Consensus 14 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 92 (183)
T 3kkq_A 14 ENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDG 92 (183)
T ss_dssp CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSE
T ss_pred cCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCE
Confidence 456789999999999999999999999888777777777666 6667788888899999999999999999999999999
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEeCCCCcCCcCCCccc
Q 032487 86 AIIVYDITNQASFERAKKWVQELQAQ-GNPNMVMALAGNKADLLDARKVTAEA 137 (139)
Q Consensus 86 ~i~v~~~~~~~s~~~~~~~~~~~~~~-~~~~~p~ivv~~k~D~~~~~~v~~~e 137 (139)
+++|||++++.+++.+..|+..+... ...+.|+++|+||+|+.+.++++.++
T Consensus 93 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~ 145 (183)
T 3kkq_A 93 FLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQ 145 (183)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHH
Confidence 99999999999999999999988663 34688999999999998877777654
No 25
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.97 E-value=1.6e-29 Score=165.95 Aligned_cols=131 Identities=40% Similarity=0.722 Sum_probs=107.4
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEE
Q 032487 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 86 (139)
Q Consensus 7 ~~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 86 (139)
....+||+++|++|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+||++|++.+...+..++..+|++
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~ 101 (200)
T 2o52_A 22 SDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGA 101 (200)
T ss_dssp CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEE
Confidence 45689999999999999999999998888777778888778788888888889999999999999999999999999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCCcCCCccc
Q 032487 87 IIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEA 137 (139)
Q Consensus 87 i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~~~v~~~e 137 (139)
++|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.++.++
T Consensus 102 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~ 152 (200)
T 2o52_A 102 LLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLE 152 (200)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHH
Confidence 999999999999999999999988766789999999999998776665543
No 26
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.97 E-value=1.1e-28 Score=159.23 Aligned_cols=129 Identities=33% Similarity=0.488 Sum_probs=112.3
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEEE
Q 032487 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (139)
Q Consensus 8 ~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 87 (139)
...+||+++|++|+|||||+++|.+..+...+.++.+..+ ...+..++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 4 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i 82 (181)
T 3t5g_A 4 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYI 82 (181)
T ss_dssp EEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEE
T ss_pred CceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEE
Confidence 4689999999999999999999998888777778887766 666778888899999999999999999999999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCCCCcCCcCCCccc
Q 032487 88 IVYDITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARKVTAEA 137 (139)
Q Consensus 88 ~v~~~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~~k~D~~~~~~v~~~e 137 (139)
+|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+.++.++
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~ 133 (181)
T 3t5g_A 83 LVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEE 133 (181)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHH
Confidence 9999999999999999999886653 3578999999999998887776654
No 27
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.9e-29 Score=167.17 Aligned_cols=131 Identities=44% Similarity=0.784 Sum_probs=110.2
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEE
Q 032487 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 86 (139)
Q Consensus 7 ~~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 86 (139)
....+||+++|++++|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus 10 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~v 89 (223)
T 3cpj_B 10 YDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGA 89 (223)
T ss_dssp CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEE
T ss_pred CCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEE
Confidence 35679999999999999999999999988777778888888888888888888999999999999999999999999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCCcCCCccc
Q 032487 87 IIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEA 137 (139)
Q Consensus 87 i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~~~v~~~e 137 (139)
++|||++++.+++.+..|+..+........|+++|+||+|+.+.++++.++
T Consensus 90 ilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~ 140 (223)
T 3cpj_B 90 LIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEE 140 (223)
T ss_dssp EEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHH
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHH
Confidence 999999999999999999999988766789999999999998877666544
No 28
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.97 E-value=5.8e-29 Score=160.04 Aligned_cols=133 Identities=28% Similarity=0.501 Sum_probs=113.9
Q ss_pred CCCCcceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCC
Q 032487 4 TGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGA 83 (139)
Q Consensus 4 ~~~~~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~ 83 (139)
.......+||+++|.+|+|||||+++|.+..+...+.++.+..+. ..+..++..+.+.+||+||++.+...+..++..+
T Consensus 3 ~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~ 81 (181)
T 2fn4_A 3 DPPPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGIPARLDILDTAGQEEFGAMREQYMRAG 81 (181)
T ss_dssp -CCSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHC
T ss_pred CCCCCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEECCEEEEEEEEECCCchhhHHHHHHHHhhC
Confidence 445677899999999999999999999998887777777776654 6667788788999999999999999999999999
Q ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHH-hCCCCCeEEEEEeCCCCcCCcCCCccc
Q 032487 84 AAAIIVYDITNQASFERAKKWVQELQA-QGNPNMVMALAGNKADLLDARKVTAEA 137 (139)
Q Consensus 84 ~~~i~v~~~~~~~s~~~~~~~~~~~~~-~~~~~~p~ivv~~k~D~~~~~~v~~~e 137 (139)
|++++|||++++.+++.+..|+..+.. ....+.|+++|+||+|+.+.++++.++
T Consensus 82 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~ 136 (181)
T 2fn4_A 82 HGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSE 136 (181)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHH
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHH
Confidence 999999999999999999999988844 445688999999999998877666543
No 29
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.97 E-value=3.6e-29 Score=159.26 Aligned_cols=129 Identities=37% Similarity=0.690 Sum_probs=114.4
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEEE
Q 032487 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (139)
Q Consensus 8 ~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 87 (139)
+..+||+++|++|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||++.+...+..++..+|+++
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 82 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV 82 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence 56899999999999999999999998887777888888888888888888899999999999999999999999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCCcCCCccc
Q 032487 88 IVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEA 137 (139)
Q Consensus 88 ~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~~~v~~~e 137 (139)
+|||++++.+++.+..|+..+.... .+.|+++|+||+|+.+.++++.++
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~ 131 (168)
T 1z2a_A 83 LVFSTTDRESFEAISSWREKVVAEV-GDIPTALVQNKIDLLDDSCIKNEE 131 (168)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHH-CSCCEEEEEECGGGGGGCSSCHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccCcccccCHHH
Confidence 9999999999999999999887764 678999999999998776665443
No 30
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=3.4e-30 Score=167.87 Aligned_cols=132 Identities=37% Similarity=0.666 Sum_probs=118.1
Q ss_pred CCcceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCE
Q 032487 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 85 (139)
Q Consensus 6 ~~~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ 85 (139)
.....+||+++|++|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+||++|++.+...+..++..+|+
T Consensus 19 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 98 (191)
T 3dz8_A 19 NFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMG 98 (191)
T ss_dssp EEEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCE
T ss_pred ccCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCE
Confidence 34568999999999999999999999988777777888888888888888778999999999999999999999999999
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCCcCCCccc
Q 032487 86 AIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEA 137 (139)
Q Consensus 86 ~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~~~v~~~e 137 (139)
+++|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.++.++
T Consensus 99 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~ 150 (191)
T 3dz8_A 99 FILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEK 150 (191)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHH
Confidence 9999999999999999999999998766789999999999998877666553
No 31
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.96 E-value=6.7e-29 Score=161.41 Aligned_cols=130 Identities=26% Similarity=0.455 Sum_probs=107.1
Q ss_pred CCcceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCE
Q 032487 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 85 (139)
Q Consensus 6 ~~~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ 85 (139)
.+...+||+++|++|+|||||+++|.+..+...+.++.+..+ ......++..+.+.+||++|++.+..+ ..++..+|+
T Consensus 17 ~~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~ 94 (187)
T 3c5c_A 17 QGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHA 94 (187)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSE
T ss_pred CCCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcccee-eEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCE
Confidence 346789999999999999999999999888777778887665 445667888899999999999988775 668899999
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhC---CCCCeEEEEEeCCCCcCCcCCCccc
Q 032487 86 AIIVYDITNQASFERAKKWVQELQAQG---NPNMVMALAGNKADLLDARKVTAEA 137 (139)
Q Consensus 86 ~i~v~~~~~~~s~~~~~~~~~~~~~~~---~~~~p~ivv~~k~D~~~~~~v~~~e 137 (139)
+++|||++++.+++.+..|+..+.... ....|+++|+||+|+.+.++++.++
T Consensus 95 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~ 149 (187)
T 3c5c_A 95 FLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAE 149 (187)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHH
Confidence 999999999999999999999987753 2578999999999998877776654
No 32
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.96 E-value=7e-29 Score=158.20 Aligned_cols=125 Identities=42% Similarity=0.753 Sum_probs=105.7
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEEEE
Q 032487 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAII 88 (139)
Q Consensus 9 ~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 88 (139)
..+||+++|++|+|||||++++.+..+...+.++.+.++....+..++..+.+.+||+||++.+...+..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence 46899999999999999999999988877777888877777777888878999999999999999999999999999999
Q ss_pred EEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCCcCCC
Q 032487 89 VYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVT 134 (139)
Q Consensus 89 v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~~~v~ 134 (139)
|||++++.+++.+..|+..+........|+++|+||+|+. .+.+.
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~-~~~~~ 126 (170)
T 1g16_A 82 VYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME-TRVVT 126 (170)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCT-TCCSC
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCC-cCccC
Confidence 9999999999999999999988766789999999999993 33344
No 33
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.96 E-value=1.9e-29 Score=162.12 Aligned_cols=132 Identities=33% Similarity=0.540 Sum_probs=112.4
Q ss_pred CCcceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECC-cEEEEEEEeCCCcccccccchhhhcCCC
Q 032487 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVND-ATVKFEIWDTAGQERYHSLAPMYYRGAA 84 (139)
Q Consensus 6 ~~~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~d~~g~~~~~~~~~~~~~~~~ 84 (139)
+..+.+||+++|++|+|||||+++|.+..+...+.++.+.++....+.+++ ..+.+.+||+||++.+...+..+++++|
T Consensus 2 ~~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d 81 (178)
T 2hxs_A 2 SHMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQ 81 (178)
T ss_dssp CCCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCS
T ss_pred CCCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCC
Confidence 356789999999999999999999999887766677887777788888766 5689999999999999999999999999
Q ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhCC---CCCeEEEEEeCCCCcCCcCCCccc
Q 032487 85 AAIIVYDITNQASFERAKKWVQELQAQGN---PNMVMALAGNKADLLDARKVTAEA 137 (139)
Q Consensus 85 ~~i~v~~~~~~~s~~~~~~~~~~~~~~~~---~~~p~ivv~~k~D~~~~~~v~~~e 137 (139)
++++|||++++.+++.+..|+..+..... ...|+++|+||+|+.+.++++.++
T Consensus 82 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~ 137 (178)
T 2hxs_A 82 GVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEK 137 (178)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHH
Confidence 99999999999999999999988876421 334489999999998876666543
No 34
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.96 E-value=1.3e-28 Score=158.04 Aligned_cols=129 Identities=36% Similarity=0.648 Sum_probs=110.2
Q ss_pred CCcceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCE
Q 032487 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 85 (139)
Q Consensus 6 ~~~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ 85 (139)
.....+||+++|++|+|||||++++.+..+...+.++.+.++....+..++..+.+.+||+||++.+...+..++..+|+
T Consensus 3 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 82 (177)
T 1wms_A 3 GKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDC 82 (177)
T ss_dssp CCEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSE
T ss_pred CccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCE
Confidence 35678999999999999999999999988877778888888888888888888899999999999999999999999999
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhCC----CCCeEEEEEeCCCCcCCcCCCc
Q 032487 86 AIIVYDITNQASFERAKKWVQELQAQGN----PNMVMALAGNKADLLDARKVTA 135 (139)
Q Consensus 86 ~i~v~~~~~~~s~~~~~~~~~~~~~~~~----~~~p~ivv~~k~D~~~~~~v~~ 135 (139)
+++|||++++.+++.+..|+..+..... .+.|+++|+||+|+. .++++.
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~-~~~~~~ 135 (177)
T 1wms_A 83 CLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS-ERQVST 135 (177)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS-SCSSCH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccc-ccccCH
Confidence 9999999999999999999998877533 678999999999997 334443
No 35
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.96 E-value=1.1e-28 Score=160.33 Aligned_cols=131 Identities=33% Similarity=0.636 Sum_probs=113.7
Q ss_pred CCcceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEE-EEEEEECCc---------EEEEEEEeCCCccccccc
Q 032487 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFF-SQTLAVNDA---------TVKFEIWDTAGQERYHSL 75 (139)
Q Consensus 6 ~~~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~---------~~~~~i~d~~g~~~~~~~ 75 (139)
.....+||+++|++|+|||||+++|.+..+...+.++.+.++. ...+..++. .+.+.+||+||++.+...
T Consensus 7 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~ 86 (195)
T 3bc1_A 7 DYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSL 86 (195)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHH
T ss_pred ccceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHH
Confidence 4567899999999999999999999998887777788887776 556666655 689999999999999998
Q ss_pred chhhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEeCCCCcCCcCCCcc
Q 032487 76 APMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGN-PNMVMALAGNKADLLDARKVTAE 136 (139)
Q Consensus 76 ~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~~k~D~~~~~~v~~~ 136 (139)
+..++..+|++++|||++++.+++.+..|+..+..... .+.|+++|+||+|+.+.+.+..+
T Consensus 87 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~ 148 (195)
T 3bc1_A 87 TTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEE 148 (195)
T ss_dssp HHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHH
T ss_pred HHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHH
Confidence 89999999999999999999999999999999887654 68999999999999876666544
No 36
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.96 E-value=1.1e-28 Score=163.66 Aligned_cols=123 Identities=28% Similarity=0.520 Sum_probs=105.7
Q ss_pred CCcceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCE
Q 032487 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 85 (139)
Q Consensus 6 ~~~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ 85 (139)
.....+||+++|++|+|||||+++|.+..+...+.++.+..+ ...+..++..+.+.+||++|++.+..++..++.++|+
T Consensus 23 ~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 101 (214)
T 3q3j_B 23 PVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDA 101 (214)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred CccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeE-EEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeE
Confidence 345689999999999999999999999988877788887765 4556677778999999999999999999999999999
Q ss_pred EEEEEECCCHHHHHH-HHHHHHHHHHhCCCCCeEEEEEeCCCCcCC
Q 032487 86 AIIVYDITNQASFER-AKKWVQELQAQGNPNMVMALAGNKADLLDA 130 (139)
Q Consensus 86 ~i~v~~~~~~~s~~~-~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~ 130 (139)
+++|||++++.+++. +..|+..+.... .+.|+++|+||+|+.++
T Consensus 102 ~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~ 146 (214)
T 3q3j_B 102 VLLCFDISRPETVDSALKKWRTEILDYC-PSTRVLLIGCKTDLRTD 146 (214)
T ss_dssp EEEEEETTCTHHHHHHHTHHHHHHHHHC-TTSEEEEEEECGGGGGC
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccc
Confidence 999999999999998 789999998874 68999999999999764
No 37
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.96 E-value=3.7e-29 Score=163.76 Aligned_cols=132 Identities=26% Similarity=0.337 Sum_probs=107.0
Q ss_pred CCcceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccc-cchhhhcCCC
Q 032487 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHS-LAPMYYRGAA 84 (139)
Q Consensus 6 ~~~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~-~~~~~~~~~~ 84 (139)
.....+||+++|++|||||||+++|.+........++.+.++....+.+++..+.+.+||++|++.+.. ++..+++.+|
T Consensus 19 ~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d 98 (195)
T 3cbq_A 19 QKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGD 98 (195)
T ss_dssp ---CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCS
T ss_pred CCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCC
Confidence 446689999999999999999999975443323344455556667777888889999999999987765 6677889999
Q ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEeCCCCcCCcCCCccc
Q 032487 85 AAIIVYDITNQASFERAKKWVQELQAQGN-PNMVMALAGNKADLLDARKVTAEA 137 (139)
Q Consensus 85 ~~i~v~~~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~~k~D~~~~~~v~~~e 137 (139)
++++|||++++.+|+.+..|+..+..... ...|+++|+||+|+.+.+.++.++
T Consensus 99 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~ 152 (195)
T 3cbq_A 99 AFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEE 152 (195)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHH
Confidence 99999999999999999999999887543 579999999999998877776554
No 38
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.96 E-value=4.6e-29 Score=163.51 Aligned_cols=122 Identities=37% Similarity=0.671 Sum_probs=99.1
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEE
Q 032487 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 86 (139)
Q Consensus 7 ~~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 86 (139)
....+||+++|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..++..+|++
T Consensus 25 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i 104 (199)
T 2p5s_A 25 SQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGV 104 (199)
T ss_dssp ---CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSEE
T ss_pred cCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCEE
Confidence 45689999999999999999999999888777778888777778888888889999999999999998888899999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCc
Q 032487 87 IIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLL 128 (139)
Q Consensus 87 i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~ 128 (139)
++|||++++.+++.+..|+..+......+.|+++|+||+|+.
T Consensus 105 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~ 146 (199)
T 2p5s_A 105 LLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIR 146 (199)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGH
T ss_pred EEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccc
Confidence 999999999999999999999988766689999999999996
No 39
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.96 E-value=6.4e-30 Score=167.60 Aligned_cols=132 Identities=42% Similarity=0.727 Sum_probs=112.2
Q ss_pred CCcceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCE
Q 032487 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 85 (139)
Q Consensus 6 ~~~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ 85 (139)
.....+||+++|.+|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+||++|++.+...+..++.++|+
T Consensus 29 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 108 (199)
T 3l0i_B 29 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 108 (199)
T ss_dssp CCSEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSE
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCE
Confidence 34668999999999999999999999988877777888888888888888888999999999999999999999999999
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCCcCCCccc
Q 032487 86 AIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEA 137 (139)
Q Consensus 86 ~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~~~v~~~e 137 (139)
+++|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.++.++
T Consensus 109 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~ 160 (199)
T 3l0i_B 109 IIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTT 160 (199)
T ss_dssp EEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHH
Confidence 9999999999999999999999987766789999999999998877666544
No 40
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.96 E-value=3.3e-28 Score=157.60 Aligned_cols=121 Identities=31% Similarity=0.605 Sum_probs=105.1
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEE
Q 032487 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 86 (139)
Q Consensus 7 ~~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 86 (139)
+...+||+++|++|+|||||+++|.+..+...+.++.+..+ ...+..++..+.+.+||+||++.+...+..++.++|++
T Consensus 4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 82 (184)
T 1m7b_A 4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV 82 (184)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEE
Confidence 56789999999999999999999999888776777777655 44566777789999999999999999999999999999
Q ss_pred EEEEECCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEeCCCCcC
Q 032487 87 IIVYDITNQASFERA-KKWVQELQAQGNPNMVMALAGNKADLLD 129 (139)
Q Consensus 87 i~v~~~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~~k~D~~~ 129 (139)
++|||++++.+++.+ ..|+..+.... ...|+++|+||+|+.+
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~ 125 (184)
T 1m7b_A 83 LICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRT 125 (184)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHC-TTCEEEEEEECGGGGG
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEEEcchhhc
Confidence 999999999999998 78988888763 5799999999999975
No 41
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.96 E-value=2.8e-28 Score=160.76 Aligned_cols=122 Identities=31% Similarity=0.610 Sum_probs=105.4
Q ss_pred CCcceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCE
Q 032487 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 85 (139)
Q Consensus 6 ~~~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ 85 (139)
.....+||+++|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||++|++.+...+..++.++|+
T Consensus 24 ~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 102 (205)
T 1gwn_A 24 NQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDA 102 (205)
T ss_dssp ---CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred ccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeE-EEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCE
Confidence 456789999999999999999999999888776777777655 4456667778999999999999999999999999999
Q ss_pred EEEEEECCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEeCCCCcC
Q 032487 86 AIIVYDITNQASFERA-KKWVQELQAQGNPNMVMALAGNKADLLD 129 (139)
Q Consensus 86 ~i~v~~~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~~k~D~~~ 129 (139)
+++|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.+
T Consensus 103 ~ilv~D~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~ 146 (205)
T 1gwn_A 103 VLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRT 146 (205)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHC-TTCEEEEEEECGGGGG
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEEechhhcc
Confidence 9999999999999998 78999888763 5799999999999975
No 42
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.96 E-value=2.7e-28 Score=160.29 Aligned_cols=124 Identities=39% Similarity=0.733 Sum_probs=109.4
Q ss_pred CCcceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCE
Q 032487 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 85 (139)
Q Consensus 6 ~~~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ 85 (139)
.....+||+++|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..++..+|+
T Consensus 4 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 83 (207)
T 1vg8_A 4 RKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADC 83 (207)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSE
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcE
Confidence 45678999999999999999999999998887788888888888888888888999999999999999999999999999
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhCC----CCCeEEEEEeCCCCcC
Q 032487 86 AIIVYDITNQASFERAKKWVQELQAQGN----PNMVMALAGNKADLLD 129 (139)
Q Consensus 86 ~i~v~~~~~~~s~~~~~~~~~~~~~~~~----~~~p~ivv~~k~D~~~ 129 (139)
+++|||++++.+++.+..|+..+..... .+.|+++|+||+|+.+
T Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 131 (207)
T 1vg8_A 84 CVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLEN 131 (207)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSC
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcc
Confidence 9999999999999999999998876532 4789999999999973
No 43
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=3.6e-28 Score=158.22 Aligned_cols=123 Identities=41% Similarity=0.732 Sum_probs=110.9
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEE
Q 032487 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 86 (139)
Q Consensus 7 ~~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 86 (139)
....+||+++|++++|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus 12 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 91 (195)
T 1x3s_A 12 VLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGV 91 (195)
T ss_dssp EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEE
Confidence 35679999999999999999999999988877888888888888888888889999999999999999999999999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCCCCcC
Q 032487 87 IIVYDITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLD 129 (139)
Q Consensus 87 i~v~~~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~~k~D~~~ 129 (139)
++|||++++.++..+..|+..+.... ....|+++|+||+|+.+
T Consensus 92 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~ 135 (195)
T 1x3s_A 92 ILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKEN 135 (195)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSS
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcc
Confidence 99999999999999999999887753 35789999999999954
No 44
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.96 E-value=9.9e-29 Score=159.07 Aligned_cols=130 Identities=38% Similarity=0.735 Sum_probs=98.0
Q ss_pred CCcceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEEC-CcEEEEEEEeCCCcccccccchhhhcCCC
Q 032487 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVN-DATVKFEIWDTAGQERYHSLAPMYYRGAA 84 (139)
Q Consensus 6 ~~~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~d~~g~~~~~~~~~~~~~~~~ 84 (139)
.+...+||+++|++|+|||||++++.+..+...+.++.+.++....+..+ +....+.+||+||++.+...+..++..+|
T Consensus 4 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 83 (182)
T 1ky3_A 4 RKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGAD 83 (182)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCC
T ss_pred ccCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCC
Confidence 45678999999999999999999999988877777888777777777776 55688999999999999999999999999
Q ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhCC----CCCeEEEEEeCCCCcCC-cCCCc
Q 032487 85 AAIIVYDITNQASFERAKKWVQELQAQGN----PNMVMALAGNKADLLDA-RKVTA 135 (139)
Q Consensus 85 ~~i~v~~~~~~~s~~~~~~~~~~~~~~~~----~~~p~ivv~~k~D~~~~-~~v~~ 135 (139)
++++|||++++.+++.+..|+..+..... ...|+++|+||+|+.+. +.++.
T Consensus 84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~ 139 (182)
T 1ky3_A 84 CCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSE 139 (182)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCH
T ss_pred EEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCH
Confidence 99999999999999999999998877532 67899999999999543 34443
No 45
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.96 E-value=5.7e-28 Score=159.39 Aligned_cols=127 Identities=40% Similarity=0.736 Sum_probs=111.1
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEE
Q 032487 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 86 (139)
Q Consensus 7 ~~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 86 (139)
....+||+++|++|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||++.+...+..++..+|++
T Consensus 17 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 96 (213)
T 3cph_A 17 YDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGI 96 (213)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEE
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEE
Confidence 34578999999999999999999999888777778888888888888888888999999999999999999999999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCCcCCC
Q 032487 87 IIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVT 134 (139)
Q Consensus 87 i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~~~v~ 134 (139)
++|||++++.+++.+..|+..+........|+++|+||+|+. .+.+.
T Consensus 97 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~-~~~~~ 143 (213)
T 3cph_A 97 ILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME-TRVVT 143 (213)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCS-SCCSC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc-ccccC
Confidence 999999999999999999999988766689999999999993 33343
No 46
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.96 E-value=7e-28 Score=157.14 Aligned_cols=129 Identities=29% Similarity=0.522 Sum_probs=109.8
Q ss_pred CCcceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCE
Q 032487 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 85 (139)
Q Consensus 6 ~~~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ 85 (139)
.....+||+++|.+|+|||||+++|.+..+...+.++.+..+. ..+..++..+.+.+||++|++.+...+..++.++|+
T Consensus 19 ~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 97 (194)
T 3reg_A 19 NGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFS-HVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDV 97 (194)
T ss_dssp --CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred ccceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeE-EEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcE
Confidence 3466899999999999999999999999887777777776654 456678888999999999999999999999999999
Q ss_pred EEEEEECCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEeCCCCcCC--cCCCcc
Q 032487 86 AIIVYDITNQASFERA-KKWVQELQAQGNPNMVMALAGNKADLLDA--RKVTAE 136 (139)
Q Consensus 86 ~i~v~~~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~~k~D~~~~--~~v~~~ 136 (139)
+++|||++++.+++.+ ..|+..+... ..+.|+++|+||+|+.++ +++..+
T Consensus 98 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~ 150 (194)
T 3reg_A 98 VLLCFAVNNRTSFDNISTKWEPEIKHY-IDTAKTVLVGLKVDLRKDGSDDVTKQ 150 (194)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHH-CTTSEEEEEEECGGGCCTTTTCCCHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHh-CCCCCEEEEEEChhhccCCCCcccHH
Confidence 9999999999999997 7888888876 467999999999999764 445444
No 47
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.96 E-value=3e-28 Score=159.82 Aligned_cols=129 Identities=31% Similarity=0.467 Sum_probs=107.5
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEEE
Q 032487 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (139)
Q Consensus 8 ~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 87 (139)
...+||+++|.+|+|||||+++|.+..+...+.++.+..+ ......++..+.+.+||+||++.+...+..++..+|+++
T Consensus 22 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 100 (201)
T 3oes_A 22 VRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYV 100 (201)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCEEE
T ss_pred CCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCEEE
Confidence 5689999999999999999999999988877777777665 555666667789999999999999999999999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCCCCcCCcCCCccc
Q 032487 88 IVYDITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARKVTAEA 137 (139)
Q Consensus 88 ~v~~~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~~k~D~~~~~~v~~~e 137 (139)
+|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+.++.++
T Consensus 101 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~ 151 (201)
T 3oes_A 101 LVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVE 151 (201)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHH
Confidence 9999999999999999999987653 3578999999999998877776554
No 48
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.96 E-value=3.7e-28 Score=154.43 Aligned_cols=128 Identities=34% Similarity=0.556 Sum_probs=109.7
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEEEE
Q 032487 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAII 88 (139)
Q Consensus 9 ~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 88 (139)
+.+||+++|++|+|||||++++.+..+...+.++.+..+ ...+..++..+.+.+||+||++.+...+..++.++|++++
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 80 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFAL 80 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEE-EEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceE-EEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 468999999999999999999999888776777776554 4556667778899999999999999999999999999999
Q ss_pred EEECCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEeCCCCcCCcCCCccc
Q 032487 89 VYDITNQASFERAKKWVQELQAQ-GNPNMVMALAGNKADLLDARKVTAEA 137 (139)
Q Consensus 89 v~~~~~~~s~~~~~~~~~~~~~~-~~~~~p~ivv~~k~D~~~~~~v~~~e 137 (139)
|||++++.+++.+..|+..+... ...+.|+++|+||+|+.+.+.++.++
T Consensus 81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~ 130 (167)
T 1c1y_A 81 VYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQ 130 (167)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHH
Confidence 99999999999999999888774 34679999999999998877665543
No 49
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.96 E-value=3.8e-28 Score=155.54 Aligned_cols=129 Identities=31% Similarity=0.441 Sum_probs=99.8
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCccc--ccccchhhhcCCCE
Q 032487 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER--YHSLAPMYYRGAAA 85 (139)
Q Consensus 8 ~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~--~~~~~~~~~~~~~~ 85 (139)
...+||+++|++|+|||||+++|.+..+... .++.+.++....+.+++..+.+.+||++|++. +......++..+|+
T Consensus 2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~ 80 (175)
T 2nzj_A 2 MALYRVVLLGDPGVGKTSLASLFAGKQERDL-HEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSA 80 (175)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCC------CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSE
T ss_pred ceEEEEEEECCCCccHHHHHHHHhcCCCccc-cCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCE
Confidence 3578999999999999999999998876543 34566677777788888888999999999987 45566677889999
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCCCCcCCcCCCccc
Q 032487 86 AIIVYDITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARKVTAEA 137 (139)
Q Consensus 86 ~i~v~~~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~~k~D~~~~~~v~~~e 137 (139)
+++|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.++++.++
T Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~ 133 (175)
T 2nzj_A 81 YVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEE 133 (175)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHH
Confidence 999999999999999999999888752 3578999999999998877776554
No 50
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.96 E-value=1.2e-28 Score=163.27 Aligned_cols=131 Identities=36% Similarity=0.643 Sum_probs=112.2
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCc----------EEEEEEEeCCCcccccccc
Q 032487 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDA----------TVKFEIWDTAGQERYHSLA 76 (139)
Q Consensus 7 ~~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~i~d~~g~~~~~~~~ 76 (139)
....+||+++|++++|||||+++|.+..+...+.++.+.++....+.+++. .+.+.+||++|++.+...+
T Consensus 22 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~ 101 (217)
T 2f7s_A 22 YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLT 101 (217)
T ss_dssp CSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHH
T ss_pred cceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHH
Confidence 456799999999999999999999998887777778887777777776655 6889999999999999999
Q ss_pred hhhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEeCCCCcCCcCCCccc
Q 032487 77 PMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGN-PNMVMALAGNKADLLDARKVTAEA 137 (139)
Q Consensus 77 ~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~~k~D~~~~~~v~~~e 137 (139)
..++..+|++++|||++++.+++.+..|+..+..... ...|+++|+||+|+.+.+.++.++
T Consensus 102 ~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~ 163 (217)
T 2f7s_A 102 TAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQ 163 (217)
T ss_dssp HHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHH
T ss_pred HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHH
Confidence 9999999999999999999999999999887766533 679999999999998876665443
No 51
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.96 E-value=3.1e-28 Score=155.30 Aligned_cols=128 Identities=26% Similarity=0.344 Sum_probs=97.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccc-cchhhhcCCCEEEE
Q 032487 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHS-LAPMYYRGAAAAII 88 (139)
Q Consensus 10 ~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~-~~~~~~~~~~~~i~ 88 (139)
.+||+++|++|+|||||+++|.+.........+.+.+.....+..++..+.+.+||++|++.+.. .+..++..+|++++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~ 81 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI 81 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence 47999999999999999999997766555555556667777788888889999999999998876 67777889999999
Q ss_pred EEECCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEeCCCCcCCcCCCccc
Q 032487 89 VYDITNQASFERAKKWVQELQAQGN-PNMVMALAGNKADLLDARKVTAEA 137 (139)
Q Consensus 89 v~~~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~~k~D~~~~~~v~~~e 137 (139)
|||++++.+++.+..|+..+..... .+.|+++|+||+|+.+.++++.++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~ 131 (169)
T 3q85_A 82 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEE 131 (169)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHH
T ss_pred EEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHH
Confidence 9999999999999999999887643 489999999999998777776654
No 52
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.96 E-value=6e-29 Score=163.38 Aligned_cols=130 Identities=27% Similarity=0.489 Sum_probs=81.5
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHhC--CCCcccccceeeEEEEEEEEECCc--EEEEEEEeCCCcccccccchhhhcCC
Q 032487 8 NINAKLVLLGDVGAGKSSLVLRFVKG--QFIEFQESTIGAAFFSQTLAVNDA--TVKFEIWDTAGQERYHSLAPMYYRGA 83 (139)
Q Consensus 8 ~~~~ki~i~G~~~~GKssli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~ 83 (139)
...+||+++|++|+|||||+++|.+. .+...+.++.+.++....+.+++. .+.+.+||+||++.+...+..++.++
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 97 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV 97 (208)
T ss_dssp EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence 35689999999999999999999988 666667777777777777777776 78999999999999999999999999
Q ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhCC---CCCeEEEEEeCCCCcC-CcCCCccc
Q 032487 84 AAAIIVYDITNQASFERAKKWVQELQAQGN---PNMVMALAGNKADLLD-ARKVTAEA 137 (139)
Q Consensus 84 ~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~---~~~p~ivv~~k~D~~~-~~~v~~~e 137 (139)
|++++|||++++.+++.+..|+..+..... ...|+++|+||+|+.+ .++++.++
T Consensus 98 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~ 155 (208)
T 2yc2_C 98 YYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDM 155 (208)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHH
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHH
Confidence 999999999999999999999999988755 6899999999999988 66666543
No 53
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.96 E-value=1.5e-27 Score=156.04 Aligned_cols=127 Identities=47% Similarity=0.811 Sum_probs=108.3
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcE----------------------------
Q 032487 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDAT---------------------------- 58 (139)
Q Consensus 7 ~~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------- 58 (139)
+...+||+++|++|+|||||+++|++..+...+.++.+.++....+..++..
T Consensus 4 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (208)
T 3clv_A 4 KKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQH 83 (208)
T ss_dssp CCSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC------------------------------
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccccc
Confidence 3567999999999999999999999998877778888877777777666544
Q ss_pred ---------EEEEEEeCCCcccccccchhhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcC
Q 032487 59 ---------VKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLD 129 (139)
Q Consensus 59 ---------~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~ 129 (139)
..+.+||+||++.+...+..+++.+|++++|||++++.+++.+..|+..+.... ..|+++|+||+| ..
T Consensus 84 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~--~~piilv~NK~D-~~ 160 (208)
T 3clv_A 84 NNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISS--NYIIILVANKID-KN 160 (208)
T ss_dssp -CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS--CCEEEEEEECTT-CC
T ss_pred ccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhC--CCcEEEEEECCC-cc
Confidence 889999999999999999999999999999999999999999999999988764 399999999999 54
Q ss_pred CcCCCcc
Q 032487 130 ARKVTAE 136 (139)
Q Consensus 130 ~~~v~~~ 136 (139)
.++++.+
T Consensus 161 ~~~~~~~ 167 (208)
T 3clv_A 161 KFQVDIL 167 (208)
T ss_dssp -CCSCHH
T ss_pred cccCCHH
Confidence 4555544
No 54
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.96 E-value=8.3e-28 Score=152.58 Aligned_cols=128 Identities=34% Similarity=0.550 Sum_probs=109.5
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEEEE
Q 032487 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAII 88 (139)
Q Consensus 9 ~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 88 (139)
+.+||+++|++|+|||||++++.+..+...+.++.+.. ....+..++....+.+||+||++.+...+..++..+|++++
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~ 80 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDF-YRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIL 80 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEE-EEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCccee-EEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEE
Confidence 46899999999999999999999988776666666643 36667778888899999999999999888889999999999
Q ss_pred EEECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCCCCcCCcCCCccc
Q 032487 89 VYDITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARKVTAEA 137 (139)
Q Consensus 89 v~~~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~~k~D~~~~~~v~~~e 137 (139)
|||+.++.+++.+..|+..+.... ..+.|+++|+||+|+.+.++++.++
T Consensus 81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~ 130 (167)
T 1kao_A 81 VYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSE 130 (167)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHH
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHH
Confidence 999999999999999998887753 3679999999999998776665543
No 55
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.96 E-value=1.3e-27 Score=155.09 Aligned_cols=125 Identities=20% Similarity=0.398 Sum_probs=105.0
Q ss_pred CCcceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCE
Q 032487 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 85 (139)
Q Consensus 6 ~~~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ 85 (139)
.+...+||+++|++|+|||||++++.+..+...+.++.+ .+...+.+++..+.+.+||++|++.+. +++++|+
T Consensus 16 ~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~--~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~ 88 (184)
T 3ihw_A 16 FQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGG--RFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDA 88 (184)
T ss_dssp CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCE--EEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSE
T ss_pred CCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcc--eEEEEEEECCEEEEEEEEECCCChhhh-----eecCCCE
Confidence 457789999999999999999999999988776666633 334777888888999999999998776 6788999
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEeCCCCc--CCcCCCccc
Q 032487 86 AIIVYDITNQASFERAKKWVQELQAQGN-PNMVMALAGNKADLL--DARKVTAEA 137 (139)
Q Consensus 86 ~i~v~~~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~~k~D~~--~~~~v~~~e 137 (139)
+++|||++++.+|+.+..|+..+..... ...|+++|+||+|+. +.+.++.++
T Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~ 143 (184)
T 3ihw_A 89 VVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSR 143 (184)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHH
Confidence 9999999999999999999999987643 578999999999994 445555543
No 56
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.96 E-value=7.8e-28 Score=152.85 Aligned_cols=128 Identities=31% Similarity=0.550 Sum_probs=107.0
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEEEE
Q 032487 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAII 88 (139)
Q Consensus 9 ~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 88 (139)
..+||+++|++|+|||||++++.+..+...+.++.+..+ ...+..++..+.+.+||+||++.+...+..++..+|++++
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC 81 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEE-EEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEE
Confidence 578999999999999999999999887766666666544 4455677778899999999999999888999999999999
Q ss_pred EEECCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEeCCCCcCCcCCCccc
Q 032487 89 VYDITNQASFERAKKWVQELQAQGN-PNMVMALAGNKADLLDARKVTAEA 137 (139)
Q Consensus 89 v~~~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~~k~D~~~~~~v~~~e 137 (139)
|||++++.+++.+..|+..+..... .+.|+++|+||+|+.+.++++.++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~ 131 (168)
T 1u8z_A 82 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEE 131 (168)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHH
Confidence 9999999999999999999887543 579999999999998876666544
No 57
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=1.6e-27 Score=155.42 Aligned_cols=122 Identities=31% Similarity=0.541 Sum_probs=106.3
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEE
Q 032487 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 86 (139)
Q Consensus 7 ~~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 86 (139)
.+..+||+++|++|+|||||+++|.+..+...+.++.+..+ ...+..++..+.+.+||++|++.+...+..+++++|++
T Consensus 15 ~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 93 (194)
T 2atx_A 15 GALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVF 93 (194)
T ss_dssp EEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEE
Confidence 35789999999999999999999999887776677776554 45566677789999999999999999999999999999
Q ss_pred EEEEECCCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEeCCCCcCC
Q 032487 87 IIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLLDA 130 (139)
Q Consensus 87 i~v~~~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~~k~D~~~~ 130 (139)
++|||++++.+++.+. .|+..+.... .+.|+++|+||+|+.+.
T Consensus 94 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~ 137 (194)
T 2atx_A 94 LICFSVVNPASFQNVKEEWVPELKEYA-PNVPFLLIGTQIDLRDD 137 (194)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECTTSTTC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccc
Confidence 9999999999999987 8999888763 47899999999999764
No 58
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.96 E-value=8.7e-28 Score=155.25 Aligned_cols=130 Identities=31% Similarity=0.534 Sum_probs=109.9
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEE
Q 032487 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 86 (139)
Q Consensus 7 ~~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 86 (139)
....+||+++|++|+|||||+++|.+..+...+.++.+..+ ...+..++..+.+.+||+||++.+...+..++..+|++
T Consensus 15 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 93 (187)
T 2a9k_A 15 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGF 93 (187)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEE-EEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEE
Confidence 45679999999999999999999999887766666666544 45556777778999999999999998889999999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEeCCCCcCCcCCCccc
Q 032487 87 IIVYDITNQASFERAKKWVQELQAQGN-PNMVMALAGNKADLLDARKVTAEA 137 (139)
Q Consensus 87 i~v~~~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~~k~D~~~~~~v~~~e 137 (139)
++|||++++.+++.+..|+..+..... ...|+++|+||+|+.+.++++.++
T Consensus 94 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~ 145 (187)
T 2a9k_A 94 LCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEE 145 (187)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHH
Confidence 999999999999999999998877543 579999999999998876665543
No 59
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.96 E-value=1.9e-27 Score=156.06 Aligned_cols=130 Identities=31% Similarity=0.537 Sum_probs=111.9
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEE
Q 032487 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 86 (139)
Q Consensus 7 ~~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 86 (139)
....+||+++|++|+|||||+++|.+..+...+.++.+..+ ...+..++..+.+.+||+||++.+...+..++..+|++
T Consensus 11 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 89 (206)
T 2bov_A 11 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGF 89 (206)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEE
Confidence 45679999999999999999999999887776677776554 45566777778999999999999999889999999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCCCCcCCcCCCccc
Q 032487 87 IIVYDITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARKVTAEA 137 (139)
Q Consensus 87 i~v~~~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~~k~D~~~~~~v~~~e 137 (139)
++|||++++.+++.+..|+..+.... ....|+++|+||+|+.+.++++.++
T Consensus 90 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~ 141 (206)
T 2bov_A 90 LCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEE 141 (206)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHH
Confidence 99999999999999999999988764 3579999999999998877666544
No 60
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.96 E-value=1.7e-27 Score=156.05 Aligned_cols=123 Identities=28% Similarity=0.535 Sum_probs=98.5
Q ss_pred CCcceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCE
Q 032487 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 85 (139)
Q Consensus 6 ~~~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ 85 (139)
.....+||+++|++|+|||||+++|.+..+...+.++.+..+ ...+..++..+.+.+||++|++.+...+..++.++|+
T Consensus 16 ~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 94 (201)
T 2q3h_A 16 AEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNF-SAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDI 94 (201)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEE-EEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSE
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcE
Confidence 456789999999999999999999998887666667766444 4556778878899999999999999999999999999
Q ss_pred EEEEEECCCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEeCCCCcCC
Q 032487 86 AIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLLDA 130 (139)
Q Consensus 86 ~i~v~~~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~~k~D~~~~ 130 (139)
+++|||++++.+++.+. .|+..+.... .+.|+++|+||+|+.+.
T Consensus 95 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~ 139 (201)
T 2q3h_A 95 FLLCFSVVSPSSFQNVSEKWVPEIRCHC-PKAPIILVGTQSDLRED 139 (201)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHC-SSSCEEEEEECGGGGGC
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEECHhhhhc
Confidence 99999999999999987 7999888763 48999999999999763
No 61
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.96 E-value=1e-27 Score=159.36 Aligned_cols=126 Identities=35% Similarity=0.668 Sum_probs=112.6
Q ss_pred CCCcceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCC
Q 032487 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAA 84 (139)
Q Consensus 5 ~~~~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~ 84 (139)
......+||+++|.+|+|||||+++++.+.+...+.++.+.++.......++..+.+.+||++|++.+...+..++.++|
T Consensus 10 ~~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 89 (221)
T 3gj0_A 10 GEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQ 89 (221)
T ss_dssp TCCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCC
T ss_pred CCcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCC
Confidence 34567899999999999999999998777666667788888888888888888899999999999999999999999999
Q ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCCc
Q 032487 85 AAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131 (139)
Q Consensus 85 ~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~~ 131 (139)
++++|||++++.+++.+..|+..+.... .+.|+++|+||+|+.+..
T Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~ 135 (221)
T 3gj0_A 90 CAIIMFDVTSRVTYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDRK 135 (221)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHS-TTCCEEEEEECTTSSSCS
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECCcccccc
Confidence 9999999999999999999999998873 578999999999997654
No 62
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.96 E-value=1.6e-27 Score=151.59 Aligned_cols=126 Identities=26% Similarity=0.395 Sum_probs=86.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEEEEE
Q 032487 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIV 89 (139)
Q Consensus 10 ~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v 89 (139)
.+||+++|++|+|||||++++.+..... ..++.+.++ ...+..++..+.+.+||++|++.+...+..++..+|++++|
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 79 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGP-EAEAAGHTY-DRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIV 79 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-----------CEE-EEEEEETTEEEEEEEEECC---------------CCEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccC-CCCccccce-EEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEE
Confidence 5799999999999999999998766543 344555444 45567788889999999999999999999999999999999
Q ss_pred EECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCCCCcCCcCCCccc
Q 032487 90 YDITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARKVTAEA 137 (139)
Q Consensus 90 ~~~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~~k~D~~~~~~v~~~e 137 (139)
||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+.++.++
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~ 128 (166)
T 3q72_A 80 YSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDE 128 (166)
T ss_dssp EETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHH
Confidence 99999999999999999888753 4679999999999998877776654
No 63
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.95 E-value=2.3e-27 Score=152.57 Aligned_cols=123 Identities=26% Similarity=0.406 Sum_probs=100.5
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEEE
Q 032487 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (139)
Q Consensus 8 ~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 87 (139)
.+.+||+++|++|+|||||+++|.+..+.. +.++.+.. +...+.+++..+.+.+||++|++. ..+++++|+++
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~-~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~i 77 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQ-YKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVI 77 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSE-EEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCccee-EEEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEE
Confidence 568999999999999999999999988776 66666644 466677788888999999999876 45678899999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHh---CCCCCeEEEEEeCCCCc--CCcCCCccc
Q 032487 88 IVYDITNQASFERAKKWVQELQAQ---GNPNMVMALAGNKADLL--DARKVTAEA 137 (139)
Q Consensus 88 ~v~~~~~~~s~~~~~~~~~~~~~~---~~~~~p~ivv~~k~D~~--~~~~v~~~e 137 (139)
+|||++++.+++.+..|+..+... ...+.|+++|+||+|+. ..+.++.++
T Consensus 78 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~ 132 (178)
T 2iwr_A 78 FVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDAR 132 (178)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHH
Confidence 999999999999999976665543 23678999999999994 445555443
No 64
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.95 E-value=5.1e-28 Score=160.39 Aligned_cols=132 Identities=31% Similarity=0.601 Sum_probs=108.5
Q ss_pred CCcceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEEC-CcEEEEEEEeCCCcccccccchhhhcCCC
Q 032487 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVN-DATVKFEIWDTAGQERYHSLAPMYYRGAA 84 (139)
Q Consensus 6 ~~~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~d~~g~~~~~~~~~~~~~~~~ 84 (139)
.+...+||+++|.+|+|||||+++|.+..+...+.++.+........... +..+.+.+||++|++.+...+..++..+|
T Consensus 7 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 86 (218)
T 4djt_A 7 RRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGAS 86 (218)
T ss_dssp ---CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCS
T ss_pred cccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCC
Confidence 45678999999999999999999999888777677777776666655554 34488999999999999999999999999
Q ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCCcCCCccc
Q 032487 85 AAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEA 137 (139)
Q Consensus 85 ~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~~~v~~~e 137 (139)
++++|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+++..++
T Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~ 139 (218)
T 4djt_A 87 GAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKL 139 (218)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCHHH
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHH
Confidence 99999999999999999999999988766679999999999998776665543
No 65
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.95 E-value=3.1e-27 Score=152.64 Aligned_cols=122 Identities=32% Similarity=0.576 Sum_probs=105.7
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEE
Q 032487 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 86 (139)
Q Consensus 7 ~~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 86 (139)
.+..+||+++|++|+|||||+++|.+..+...+.++.+..+ ...+..++..+.+.+||+||++.+...+..++..+|++
T Consensus 2 ~~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 80 (186)
T 1mh1_A 2 SPQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVS 80 (186)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEE-EEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEE
T ss_pred CCcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCccccee-EEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEE
Confidence 35689999999999999999999999887766666666544 45566788889999999999999999999999999999
Q ss_pred EEEEECCCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEeCCCCcCC
Q 032487 87 IIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLLDA 130 (139)
Q Consensus 87 i~v~~~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~~k~D~~~~ 130 (139)
++|||++++.+++.+. .|+..+.... .+.|+++|+||+|+.+.
T Consensus 81 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~ 124 (186)
T 1mh1_A 81 LICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDD 124 (186)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHS-TTSCEEEEEECHHHHTC
T ss_pred EEEEECCChhhHHHHHHHHHHHHHHhC-CCCCEEEEeEccccccc
Confidence 9999999999999987 7988888764 48899999999999764
No 66
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.95 E-value=3.4e-27 Score=154.90 Aligned_cols=122 Identities=34% Similarity=0.625 Sum_probs=106.0
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEE
Q 032487 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 86 (139)
Q Consensus 7 ~~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 86 (139)
+...+||+++|.+|+|||||++++.+..+...+.++.+..+. ..+..++..+.+.+||+||++.+...+..++.++|++
T Consensus 22 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 100 (201)
T 2gco_A 22 AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYI-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVI 100 (201)
T ss_dssp CCEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCE-EEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEE
T ss_pred cccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEE-EEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEE
Confidence 466899999999999999999999998887766677766553 3456777788999999999999999999999999999
Q ss_pred EEEEECCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEeCCCCcCC
Q 032487 87 IIVYDITNQASFERA-KKWVQELQAQGNPNMVMALAGNKADLLDA 130 (139)
Q Consensus 87 i~v~~~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~~k~D~~~~ 130 (139)
++|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.+.
T Consensus 101 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~ 144 (201)
T 2gco_A 101 LMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRQD 144 (201)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECGGGTTC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEecHHhhcC
Confidence 999999999999998 68888887763 57899999999999765
No 67
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=1.9e-27 Score=155.40 Aligned_cols=129 Identities=36% Similarity=0.525 Sum_probs=108.8
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEE
Q 032487 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 86 (139)
Q Consensus 7 ~~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 86 (139)
....+||+++|++|+|||||+++|.+..+...+.++.+..+ ...+..++..+.+.+||++|++. ...+..++..+|++
T Consensus 25 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~i 102 (196)
T 2atv_A 25 KSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGF 102 (196)
T ss_dssp --CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEE
Confidence 35679999999999999999999999888776777777544 45566788789999999999988 66778889999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCCCCcCCcCCCccc
Q 032487 87 IIVYDITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARKVTAEA 137 (139)
Q Consensus 87 i~v~~~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~~k~D~~~~~~v~~~e 137 (139)
++|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.++++.++
T Consensus 103 ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~ 154 (196)
T 2atv_A 103 VLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEE 154 (196)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHH
Confidence 99999999999999999999887743 4689999999999998877666554
No 68
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=2.4e-27 Score=157.00 Aligned_cols=131 Identities=27% Similarity=0.405 Sum_probs=103.7
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHhCCC-CcccccceeeEEEEEEEEECCcEEEEEEEeCCCccc-ccccchhhhcCCC
Q 032487 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQF-IEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER-YHSLAPMYYRGAA 84 (139)
Q Consensus 7 ~~~~~ki~i~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~-~~~~~~~~~~~~~ 84 (139)
....+||+++|.+|+|||||+++|.+... .....++.+.++..+.+.+++..+.+.+||++|++. +..+...+++.++
T Consensus 34 ~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~ 113 (211)
T 2g3y_A 34 GNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGD 113 (211)
T ss_dssp -CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCS
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhCC
Confidence 35579999999999999999999996432 122334566667777788888888999999999876 4445566788899
Q ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEeCCCCcCCcCCCccc
Q 032487 85 AAIIVYDITNQASFERAKKWVQELQAQ-GNPNMVMALAGNKADLLDARKVTAEA 137 (139)
Q Consensus 85 ~~i~v~~~~~~~s~~~~~~~~~~~~~~-~~~~~p~ivv~~k~D~~~~~~v~~~e 137 (139)
++++|||++++.+|+.+..|...+... ...+.|+++|+||+|+.+.++++.++
T Consensus 114 ~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e 167 (211)
T 2g3y_A 114 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSE 167 (211)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHH
Confidence 999999999999999999998888764 23578999999999998777776554
No 69
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.95 E-value=2.1e-27 Score=156.27 Aligned_cols=124 Identities=31% Similarity=0.545 Sum_probs=104.0
Q ss_pred CCcceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCE
Q 032487 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 85 (139)
Q Consensus 6 ~~~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ 85 (139)
.....+||+++|.+|+|||||++++....+...+.++.+. .....+..++..+.+.+||+||++.+...+..++.++|+
T Consensus 26 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 104 (204)
T 4gzl_A 26 FQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFD-NYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDV 104 (204)
T ss_dssp ----CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEE-EEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred hcCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecc-eeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCE
Confidence 4567899999999999999999999998887666666653 445566677788899999999999999999999999999
Q ss_pred EEEEEECCCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEeCCCCcCCc
Q 032487 86 AIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLLDAR 131 (139)
Q Consensus 86 ~i~v~~~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~~k~D~~~~~ 131 (139)
+++|||++++.+++.+. .|+..+.... .+.|+++|+||+|+.+.+
T Consensus 105 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~ 150 (204)
T 4gzl_A 105 FLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDK 150 (204)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECHHHHTCH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhccch
Confidence 99999999999999987 8998888874 679999999999997654
No 70
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.95 E-value=1.7e-27 Score=157.22 Aligned_cols=124 Identities=34% Similarity=0.591 Sum_probs=105.8
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEE
Q 032487 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 86 (139)
Q Consensus 7 ~~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 86 (139)
....+||+++|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..++.++|++
T Consensus 6 ~~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 84 (212)
T 2j0v_A 6 VSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIF 84 (212)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCE-EEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEE
T ss_pred cCceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeE-EEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEE
Confidence 35689999999999999999999999888766777777554 44556777789999999999999999999999999999
Q ss_pred EEEEECCCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEeCCCCcCCcC
Q 032487 87 IIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLLDARK 132 (139)
Q Consensus 87 i~v~~~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~~k~D~~~~~~ 132 (139)
++|||++++.+++.+. .|+..+.... ++.|+++|+||+|+.+.+.
T Consensus 85 ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~ 130 (212)
T 2j0v_A 85 VLAFSLISKASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLRDDKG 130 (212)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHC-TTCCEEEEEECHHHHTCHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeCHHhhhCcc
Confidence 9999999999999986 8999988764 4799999999999977543
No 71
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.95 E-value=1.8e-26 Score=149.36 Aligned_cols=122 Identities=30% Similarity=0.543 Sum_probs=103.3
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEEE
Q 032487 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (139)
Q Consensus 8 ~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 87 (139)
+..+||+++|++|+|||||+++|.+..+...+.++.+ +........++..+.+.+||+||++.+...+..++..+|+++
T Consensus 2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 80 (189)
T 4dsu_A 2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL 80 (189)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCC-EEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCch-heEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence 4689999999999999999999999887766666664 344566677888889999999999999999999999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCCCCcCC
Q 032487 88 IVYDITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDA 130 (139)
Q Consensus 88 ~v~~~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~~k~D~~~~ 130 (139)
+|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~ 124 (189)
T 4dsu_A 81 CVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSR 124 (189)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCccc
Confidence 9999999999999999999988753 468999999999999743
No 72
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=9.3e-27 Score=153.42 Aligned_cols=121 Identities=33% Similarity=0.607 Sum_probs=100.0
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEEE
Q 032487 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (139)
Q Consensus 8 ~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 87 (139)
...+||+++|.+|+|||||+++|.+..+...+.++.+..+. ..+..++..+.+.+||+||++.+...+..++.++|+++
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 101 (207)
T 2fv8_A 23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 101 (207)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEE-EEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEE
T ss_pred ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEE-EEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEE
Confidence 45789999999999999999999998887666677766553 33567777889999999999999999999999999999
Q ss_pred EEEECCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEeCCCCcCC
Q 032487 88 IVYDITNQASFERA-KKWVQELQAQGNPNMVMALAGNKADLLDA 130 (139)
Q Consensus 88 ~v~~~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~~k~D~~~~ 130 (139)
+|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.+.
T Consensus 102 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~ 144 (207)
T 2fv8_A 102 MCFSVDSPDSLENIPEKWVPEVKHFC-PNVPIILVANKKDLRSD 144 (207)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECGGGGGC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhhhcc
Confidence 99999999999998 68888887753 57899999999999765
No 73
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.95 E-value=3.7e-27 Score=156.17 Aligned_cols=122 Identities=33% Similarity=0.611 Sum_probs=86.3
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEEE
Q 032487 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (139)
Q Consensus 8 ~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 87 (139)
.+.+||+++|++|+|||||+++|.+..+...+.++.+.. ....+..++..+.+.+||++|++.+...+..++.++|+++
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 110 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFER-YMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLL 110 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEE-EEEEEEETTEEEEEEEEEC---------------CEEEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccee-EEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEE
Confidence 467999999999999999999999887766666666544 3555677888889999999999999999999999999999
Q ss_pred EEEECCCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEeCCCCcCCc
Q 032487 88 IVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLLDAR 131 (139)
Q Consensus 88 ~v~~~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~~k~D~~~~~ 131 (139)
+|||++++.+++.+. .|+..+.... .+.|+++|+||+|+.+..
T Consensus 111 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~ 154 (214)
T 2j1l_A 111 LCFDVTSPNSFDNIFNRWYPEVNHFC-KKVPIIVVGCKTDLRKDK 154 (214)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECGGGGSCH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhhccc
Confidence 999999999999986 7999888763 578999999999997753
No 74
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=3.7e-27 Score=150.32 Aligned_cols=127 Identities=30% Similarity=0.467 Sum_probs=105.7
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEEEE
Q 032487 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAII 88 (139)
Q Consensus 9 ~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 88 (139)
..+||+++|++|+|||||+++|.+..+...+.++.+..+ ......++..+.+.+||+||++.+...+..++..+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~ 80 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFIL 80 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEE-EEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEE
Confidence 468999999999999999999999887665666666544 3445667777899999999999998888889999999999
Q ss_pred EEECCCHHHHHHHHHHHHHHHHhC--CCCCeEEEEEeCCCCcCCcCCCcc
Q 032487 89 VYDITNQASFERAKKWVQELQAQG--NPNMVMALAGNKADLLDARKVTAE 136 (139)
Q Consensus 89 v~~~~~~~s~~~~~~~~~~~~~~~--~~~~p~ivv~~k~D~~~~~~v~~~ 136 (139)
|||++++.+++.+..|+..+.... ....|+++|+||+|+.+.++++.+
T Consensus 81 v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~ 130 (172)
T 2erx_A 81 VYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSS 130 (172)
T ss_dssp EEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHH
Confidence 999999999999999988877642 257899999999999877666543
No 75
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.95 E-value=2.8e-26 Score=148.96 Aligned_cols=122 Identities=29% Similarity=0.528 Sum_probs=94.5
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEE
Q 032487 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 86 (139)
Q Consensus 7 ~~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 86 (139)
....+||+++|.+|+|||||+++|.+..+...+.++.+..+ ...+..++..+.+.+||+||++.+...+..++..+|++
T Consensus 18 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 96 (190)
T 3con_A 18 GMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGF 96 (190)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC-----------CTTCSEE
T ss_pred ccceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEE-EEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEE
Confidence 45679999999999999999999998877665666665433 45566777788999999999999999999999999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEeCCCCcC
Q 032487 87 IIVYDITNQASFERAKKWVQELQAQGN-PNMVMALAGNKADLLD 129 (139)
Q Consensus 87 i~v~~~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~~k~D~~~ 129 (139)
++|||++++.+++.+..|+..+..... ...|+++|+||+|+.+
T Consensus 97 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~ 140 (190)
T 3con_A 97 LCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT 140 (190)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCc
Confidence 999999999999999999998877533 5789999999999876
No 76
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.95 E-value=6.4e-26 Score=148.58 Aligned_cols=130 Identities=42% Similarity=0.793 Sum_probs=111.8
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEEE
Q 032487 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (139)
Q Consensus 8 ~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 87 (139)
...+|++++|++|+|||||++++.+..+...+.++.+.++....+.+++..+.+.+||++|++.+...+..+++.+++++
T Consensus 3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i 82 (199)
T 2f9l_A 3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL 82 (199)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEE
Confidence 45789999999999999999999998887777788888888888888888889999999999999888888899999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCCcCCCccc
Q 032487 88 IVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEA 137 (139)
Q Consensus 88 ~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~~~v~~~e 137 (139)
+|+|+.+..+++.+..|+..+........|+++++||+|+.+.+.++.++
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~ 132 (199)
T 2f9l_A 83 LVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDE 132 (199)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCHHH
Confidence 99999999999999899988877655678999999999998766665443
No 77
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.95 E-value=3.8e-26 Score=144.66 Aligned_cols=120 Identities=30% Similarity=0.563 Sum_probs=103.4
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEEEE
Q 032487 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAII 88 (139)
Q Consensus 9 ~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 88 (139)
+.+||+++|++|+|||||++++.+..+...+.++.+.. ....+..++..+.+.+||+||++.+...+..++..+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 80 (166)
T 2ce2_X 2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDS-YRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 80 (166)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEE-EEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceE-EEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEE
Confidence 46899999999999999999999988776666666543 35556677778899999999999988888889999999999
Q ss_pred EEECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCCCCcC
Q 032487 89 VYDITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLD 129 (139)
Q Consensus 89 v~~~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~~k~D~~~ 129 (139)
|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+
T Consensus 81 v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~ 122 (166)
T 2ce2_X 81 VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA 122 (166)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhh
Confidence 999999999999999999887753 34799999999999876
No 78
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.94 E-value=1.1e-27 Score=154.44 Aligned_cols=124 Identities=36% Similarity=0.632 Sum_probs=91.4
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEE
Q 032487 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 86 (139)
Q Consensus 7 ~~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 86 (139)
.+..+||+++|++|+|||||++++.+..+...+.++.+..+ ...+..++..+.+.+||+||++.+...+..+++++|++
T Consensus 5 ~~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 83 (182)
T 3bwd_D 5 ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVF 83 (182)
T ss_dssp --CCCEEEEECSTTSSHHHHHHHHHHSCCC----------C-BCCCC-------CEEECCCC-CTTTTTGGGGGTTCSEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeE-EEEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEE
Confidence 35679999999999999999999999887666666655433 22334455667889999999999999999999999999
Q ss_pred EEEEECCCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEeCCCCcCCcC
Q 032487 87 IIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLLDARK 132 (139)
Q Consensus 87 i~v~~~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~~k~D~~~~~~ 132 (139)
++|||++++.+++.+. .|+..+.... .+.|+++|+||+|+.+.+.
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~ 129 (182)
T 3bwd_D 84 ILAFSLISKASYENVSKKWIPELKHYA-PGVPIVLVGTKLDLRDDKQ 129 (182)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHC-TTCCEEEEEECHHHHTCHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhhcCcc
Confidence 9999999999999987 7999888764 4799999999999977644
No 79
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.94 E-value=6.7e-27 Score=152.29 Aligned_cols=124 Identities=23% Similarity=0.299 Sum_probs=97.9
Q ss_pred CCcceeEEEEEcCCCCcHHHHHHHHHhCCCCcc----------cccceeeEEEEEEE-EECCcEEEEEEEeCCCcccccc
Q 032487 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEF----------QESTIGAAFFSQTL-AVNDATVKFEIWDTAGQERYHS 74 (139)
Q Consensus 6 ~~~~~~ki~i~G~~~~GKssli~~l~~~~~~~~----------~~~~~~~~~~~~~~-~~~~~~~~~~i~d~~g~~~~~~ 74 (139)
.+...+||+++|++|+|||||++.+.+...... +.++.+.++....+ ..++..+.+.+||+||++.+..
T Consensus 10 ~~~~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~ 89 (198)
T 3t1o_A 10 NREINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNA 89 (198)
T ss_dssp TTEEEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSH
T ss_pred ccccccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHH
Confidence 456789999999999999999977765432221 23455555444444 4566778999999999999999
Q ss_pred cchhhhcCCCEEEEEEECC------CHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCC
Q 032487 75 LAPMYYRGAAAAIIVYDIT------NQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDA 130 (139)
Q Consensus 75 ~~~~~~~~~~~~i~v~~~~------~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~ 130 (139)
.+..+++++|++++|||++ +..++..+..|+..+.. ...+.|+++|+||+|+.+.
T Consensus 90 ~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~-~~~~~piilv~NK~Dl~~~ 150 (198)
T 3t1o_A 90 SRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGL-TLDDVPIVIQVNKRDLPDA 150 (198)
T ss_dssp HHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTC-CTTSSCEEEEEECTTSTTC
T ss_pred HHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhcc-ccCCCCEEEEEEchhcccc
Confidence 9999999999999999999 56778788888887743 2468999999999999765
No 80
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.94 E-value=4.4e-26 Score=148.76 Aligned_cols=129 Identities=27% Similarity=0.405 Sum_probs=101.2
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHhCC--CCcccccceeeEEEEEEEEECCcEEEEEEEeCCCccc-ccccchhhhcCCC
Q 032487 8 NINAKLVLLGDVGAGKSSLVLRFVKGQ--FIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER-YHSLAPMYYRGAA 84 (139)
Q Consensus 8 ~~~~ki~i~G~~~~GKssli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~-~~~~~~~~~~~~~ 84 (139)
...+||+++|++|+|||||+++|.+.. +.. ..++.+.++....+.+++..+.+.+||++|++. +..++..+++.+|
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~ 82 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDS-DXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGD 82 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCCC-----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCS
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCCcCc-cccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCC
Confidence 457899999999999999999999633 233 234466666677778888888999999999876 4556677788899
Q ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCCCCcCCcCCCccc
Q 032487 85 AAIIVYDITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARKVTAEA 137 (139)
Q Consensus 85 ~~i~v~~~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~~k~D~~~~~~v~~~e 137 (139)
++++|||++++.+|+.+..|...+.... ..+.|+++|+||+|+.+.+.++.++
T Consensus 83 ~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~ 136 (192)
T 2cjw_A 83 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSE 136 (192)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHH
Confidence 9999999999999999999988877642 3578999999999998766666544
No 81
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.94 E-value=4e-26 Score=149.01 Aligned_cols=121 Identities=21% Similarity=0.330 Sum_probs=98.5
Q ss_pred CCcceeEEEEEcCCCCcHHHHHHHHHhCCCCc-ccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCC
Q 032487 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIE-FQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAA 84 (139)
Q Consensus 6 ~~~~~~ki~i~G~~~~GKssli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~ 84 (139)
......||+++|.+|+|||||+++|.+..+.. .+.++.+.. ...+.. ..+.+.+||++|++.+...+..+++++|
T Consensus 13 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~--~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 88 (199)
T 4bas_A 13 QSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYN--VETFEK--GRVAFTVFDMGGAKKFRGLWETYYDNID 88 (199)
T ss_dssp ---CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEE--EEEEEE--TTEEEEEEEECCSGGGGGGGGGGCTTCS
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHhcCCCccccccccccee--EEEEEe--CCEEEEEEECCCCHhHHHHHHHHHhcCC
Confidence 34668899999999999999999999988877 567777743 333333 3488999999999999999999999999
Q ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhCC--------CCCeEEEEEeCCCCcCC
Q 032487 85 AAIIVYDITNQASFERAKKWVQELQAQGN--------PNMVMALAGNKADLLDA 130 (139)
Q Consensus 85 ~~i~v~~~~~~~s~~~~~~~~~~~~~~~~--------~~~p~ivv~~k~D~~~~ 130 (139)
++++|||++++.+|+.+..|+..+..... ...|+++|+||+|+.+.
T Consensus 89 ~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 142 (199)
T 4bas_A 89 AVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGA 142 (199)
T ss_dssp EEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTC
T ss_pred EEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCC
Confidence 99999999999999999999888765411 37899999999999876
No 82
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.94 E-value=2.5e-26 Score=150.02 Aligned_cols=122 Identities=28% Similarity=0.456 Sum_probs=103.6
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEE
Q 032487 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 86 (139)
Q Consensus 7 ~~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 86 (139)
....+||+++|++|+|||||+++|.+..+...+.++.+..+ ...+..++..+.+.+||+||++.+...+..++..+|++
T Consensus 5 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 83 (199)
T 2gf0_A 5 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTY-RQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAF 83 (199)
T ss_dssp CCCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEE-EEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEE
T ss_pred CCCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccce-eEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEE
Confidence 45679999999999999999999999887766666666443 34456677778999999999999988888899999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEeCCCCcC
Q 032487 87 IIVYDITNQASFERAKKWVQELQAQGN--PNMVMALAGNKADLLD 129 (139)
Q Consensus 87 i~v~~~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~~k~D~~~ 129 (139)
++|||++++.+++.+..|+..+..... ...|+++|+||+|+.+
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~ 128 (199)
T 2gf0_A 84 ILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ 128 (199)
T ss_dssp EEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSS
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCc
Confidence 999999999999999888887776432 4789999999999975
No 83
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.94 E-value=6.6e-26 Score=147.26 Aligned_cols=120 Identities=28% Similarity=0.426 Sum_probs=102.0
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEE
Q 032487 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 86 (139)
Q Consensus 7 ~~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 86 (139)
.+..+||+++|++|+|||||+++|.+..+...+.++.+.++. .+..+ .+.+.+||++|++.+...+..++.++|++
T Consensus 19 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 94 (188)
T 1zd9_A 19 SKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR--KITKG--NVTIKLWDIGGQPRFRSMWERYCRGVSAI 94 (188)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE--EEEET--TEEEEEEEECCSHHHHTTHHHHHTTCSEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEE--EEEeC--CEEEEEEECCCCHhHHHHHHHHHccCCEE
Confidence 356899999999999999999999998887667777776543 23333 48899999999999999999999999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCCCCcCC
Q 032487 87 IIVYDITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDA 130 (139)
Q Consensus 87 i~v~~~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~~k~D~~~~ 130 (139)
++|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.
T Consensus 95 i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 139 (188)
T 1zd9_A 95 VYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGA 139 (188)
T ss_dssp EEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccC
Confidence 99999999999999999988876532 367999999999999764
No 84
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.94 E-value=1.4e-25 Score=146.22 Aligned_cols=130 Identities=42% Similarity=0.780 Sum_probs=114.2
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEE
Q 032487 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 86 (139)
Q Consensus 7 ~~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 86 (139)
....++++++|++|||||||++++.+..+...+.++.+.++....+.+++..+.+.+||++|.+.+...+..+++.++++
T Consensus 26 ~~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~ 105 (191)
T 1oix_A 26 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGA 105 (191)
T ss_dssp CSEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEE
Confidence 34578999999999999999999999888777888888888888888888888899999999999888888889999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCCcCCCcc
Q 032487 87 IIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAE 136 (139)
Q Consensus 87 i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~~~v~~~ 136 (139)
++|+|..+..+++.+..|+..+........|+++++||+|+.+.+.+..+
T Consensus 106 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~ 155 (191)
T 1oix_A 106 LLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTD 155 (191)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHH
Confidence 99999999999998888988887655567899999999999876655544
No 85
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.94 E-value=1.1e-25 Score=145.71 Aligned_cols=119 Identities=24% Similarity=0.391 Sum_probs=100.2
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEEE
Q 032487 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (139)
Q Consensus 8 ~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 87 (139)
+..+||+++|++|+|||||++++.+.. ...+.++.+.. ...+.+++ ..+.+||+||++.+...+..+++++|+++
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 90 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFN--IKTLEHRG--FKLNIWDVGGQKSLRSYWRNYFESTDGLI 90 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEE--EEEEEETT--EEEEEEEECCSHHHHTTGGGGCTTCSEEE
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccc--eEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 578999999999999999999999887 55566666643 44455554 78999999999999999999999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEeCCCCcCCc
Q 032487 88 IVYDITNQASFERAKKWVQELQAQ-GNPNMVMALAGNKADLLDAR 131 (139)
Q Consensus 88 ~v~~~~~~~s~~~~~~~~~~~~~~-~~~~~p~ivv~~k~D~~~~~ 131 (139)
+|+|++++.+++.+..|+..+... ...+.|+++|+||+|+.+..
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 135 (186)
T 1ksh_A 91 WVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGAL 135 (186)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC
T ss_pred EEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCC
Confidence 999999999999999998887664 23579999999999997653
No 86
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.94 E-value=1.5e-25 Score=145.97 Aligned_cols=118 Identities=23% Similarity=0.353 Sum_probs=98.1
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEE
Q 032487 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 86 (139)
Q Consensus 7 ~~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 86 (139)
..+.+||+++|++|+|||||++++.+..+.. +.++.+.+ ...+.+++ ..+.+||+||++.+...+..+++++|++
T Consensus 20 ~~~~~ki~~vG~~~vGKSsli~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 94 (190)
T 1m2o_B 20 WNKHGKLLFLGLDNAGKTTLLHMLKNDRLAT-LQPTWHPT--SEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGI 94 (190)
T ss_dssp ----CEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCCSCE--EEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEE
T ss_pred cCCccEEEEECCCCCCHHHHHHHHhcCCCCc-cccCCCCC--eEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEE
Confidence 3567899999999999999999999887653 55566653 45556666 8899999999999999999999999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEeCCCCcC
Q 032487 87 IIVYDITNQASFERAKKWVQELQAQ-GNPNMVMALAGNKADLLD 129 (139)
Q Consensus 87 i~v~~~~~~~s~~~~~~~~~~~~~~-~~~~~p~ivv~~k~D~~~ 129 (139)
++|||++++.+++.+..|+..+... ...+.|+++|+||+|+.+
T Consensus 95 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 138 (190)
T 1m2o_B 95 VFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN 138 (190)
T ss_dssp EEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT
T ss_pred EEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcC
Confidence 9999999999999999999888764 236789999999999976
No 87
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.94 E-value=8.9e-26 Score=146.72 Aligned_cols=120 Identities=25% Similarity=0.387 Sum_probs=99.6
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHhCC-CCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCE
Q 032487 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQ-FIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 85 (139)
Q Consensus 7 ~~~~~ki~i~G~~~~GKssli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ 85 (139)
..+.+||+++|.+|+|||||+++|.+.. +...+.++.+ +....+.+++ ..+.+||++|++.+...+..++.++|+
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 93 (190)
T 2h57_A 18 GSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG--FSIEKFKSSS--LSFTVFDMSGQGRYRNLWEHYYKEGQA 93 (190)
T ss_dssp ---CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSS--EEEEEEECSS--CEEEEEEECCSTTTGGGGGGGGGGCSE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccc--eeEEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCE
Confidence 4568999999999999999999999876 4444556666 3445555554 789999999999999999999999999
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhCC---CCCeEEEEEeCCCCcCC
Q 032487 86 AIIVYDITNQASFERAKKWVQELQAQGN---PNMVMALAGNKADLLDA 130 (139)
Q Consensus 86 ~i~v~~~~~~~s~~~~~~~~~~~~~~~~---~~~p~ivv~~k~D~~~~ 130 (139)
+++|||++++.+++.+..|+..+..... .+.|+++|+||+|+.+.
T Consensus 94 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 141 (190)
T 2h57_A 94 IIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDA 141 (190)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTC
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccC
Confidence 9999999999999999999988877533 57899999999999764
No 88
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.94 E-value=3.6e-26 Score=149.79 Aligned_cols=117 Identities=21% Similarity=0.320 Sum_probs=92.2
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEEE
Q 032487 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (139)
Q Consensus 8 ~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 87 (139)
.+.+||+++|++|+|||||++++.+..+.. +.++.+.+ ...+.+++ ..+.+|||||++.+...+..+++++|+++
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 97 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQ-HVPTLHPT--SEELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIV 97 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCS--CEEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCCc-cCCCCCce--eEEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEE
Confidence 457899999999999999999999877643 45555543 34555665 78999999999999999999999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEeCCCCcC
Q 032487 88 IVYDITNQASFERAKKWVQELQAQ-GNPNMVMALAGNKADLLD 129 (139)
Q Consensus 88 ~v~~~~~~~s~~~~~~~~~~~~~~-~~~~~p~ivv~~k~D~~~ 129 (139)
+|||++++.+|+.+..|+..+... ...+.|+++|+||+|+.+
T Consensus 98 ~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 140 (198)
T 1f6b_A 98 FLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE 140 (198)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT
T ss_pred EEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccc
Confidence 999999999999999999888764 236799999999999976
No 89
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.94 E-value=3.3e-25 Score=141.32 Aligned_cols=118 Identities=24% Similarity=0.427 Sum_probs=99.0
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEEE
Q 032487 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (139)
Q Consensus 8 ~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 87 (139)
.+.+||+++|++|+|||||++++.+..+.. +.++.+.. ...+.+++ ..+.+||+||++.+...+..+++++|+++
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 79 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGEVVT-TIPTIGFN--VETVTYKN--LKFQVWDLGGLTSIRPYWRCYYSNTDAVI 79 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSSEE--EEEEEETT--EEEEEEEECCCGGGGGGGGGGCTTCSEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCccc--eEEEEECC--EEEEEEECCCChhhhHHHHHHhccCCEEE
Confidence 457999999999999999999999887654 45555543 44455554 78999999999999999999999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCCCCcCC
Q 032487 88 IVYDITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDA 130 (139)
Q Consensus 88 ~v~~~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~~k~D~~~~ 130 (139)
+|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.
T Consensus 80 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 123 (171)
T 1upt_A 80 YVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQA 123 (171)
T ss_dssp EEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred EEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCC
Confidence 9999999999999988888776542 267899999999999765
No 90
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.94 E-value=8.5e-26 Score=145.86 Aligned_cols=120 Identities=23% Similarity=0.415 Sum_probs=98.4
Q ss_pred CCcceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCE
Q 032487 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 85 (139)
Q Consensus 6 ~~~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ 85 (139)
...+.+||+++|.+|+|||||+++|.+..+ ..+.++.+... ..+.+++ ..+.+||++|++.+...+..++.++|+
T Consensus 17 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 91 (181)
T 2h17_A 17 RGSQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNV--EEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEF 91 (181)
T ss_dssp ----CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSC--EEEEETT--EEEEEEEESSSGGGTCGGGGGGTTCCE
T ss_pred CCCceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceee--EEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCE
Confidence 346689999999999999999999998877 34555665433 3444554 889999999999999999999999999
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCCCCcCC
Q 032487 86 AIIVYDITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDA 130 (139)
Q Consensus 86 ~i~v~~~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~~k~D~~~~ 130 (139)
+++|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.
T Consensus 92 ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 137 (181)
T 2h17_A 92 VIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC 137 (181)
T ss_dssp EEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccC
Confidence 999999999999999999888877642 367899999999999764
No 91
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.94 E-value=8.3e-26 Score=146.52 Aligned_cols=118 Identities=23% Similarity=0.436 Sum_probs=95.9
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEEE
Q 032487 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (139)
Q Consensus 8 ~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 87 (139)
.+.+||+++|++|+|||||+++|.+..+. .+.++.+.. ...+.+++ ..+.+||++|++.+...+..+++++|+++
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 88 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSN--VEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVI 88 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSS--CEEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccc--eEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 56899999999999999999999987765 455565533 33444554 88999999999999999999999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCCCCcCC
Q 032487 88 IVYDITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDA 130 (139)
Q Consensus 88 ~v~~~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~~k~D~~~~ 130 (139)
+|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.
T Consensus 89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 132 (187)
T 1zj6_A 89 VVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC 132 (187)
T ss_dssp EEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTC
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCC
Confidence 9999999999999999998887642 357999999999999764
No 92
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.94 E-value=9.4e-26 Score=143.09 Aligned_cols=115 Identities=23% Similarity=0.470 Sum_probs=95.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEEEEEE
Q 032487 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY 90 (139)
Q Consensus 11 ~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~ 90 (139)
+||+++|++|+|||||++++.+..+.. +.++.+.. ...+..+ ...+.+||+||++.+...+..++.++|++++||
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 75 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFN--VETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 75 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSSCC--EEEEECS--SCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCcee--EEEEEEC--CEEEEEEEcCCChhhHHHHHHHhccCCEEEEEE
Confidence 589999999999999999999877654 45565532 3334443 478999999999999988888999999999999
Q ss_pred ECCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEeCCCCcCC
Q 032487 91 DITNQASFERAKKWVQELQAQ-GNPNMVMALAGNKADLLDA 130 (139)
Q Consensus 91 ~~~~~~s~~~~~~~~~~~~~~-~~~~~p~ivv~~k~D~~~~ 130 (139)
|++++.+++.+..|+..+... ...+.|+++|+||+|+.+.
T Consensus 76 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 116 (164)
T 1r8s_A 76 DSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA 116 (164)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred ECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCC
Confidence 999999999999998887653 2357899999999999764
No 93
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.94 E-value=1.4e-25 Score=146.28 Aligned_cols=119 Identities=22% Similarity=0.454 Sum_probs=94.4
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEE
Q 032487 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 86 (139)
Q Consensus 7 ~~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 86 (139)
.++.+||+++|++|+|||||++++.+..+.. +.++.+ +....+..++ ..+.+||+||++.+...+..++.++|++
T Consensus 26 ~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 100 (192)
T 2b6h_A 26 GKKQMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--FNVETVEYKN--ICFTVWDVGGQDKIRPLWRHYFQNTQGL 100 (192)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHCSSCCEE-EEEETT--EEEEEEEETT--EEEEEEECC-----CTTHHHHHHTCCEE
T ss_pred cCCccEEEEECCCCCCHHHHHHHHHhCCccc-cCCcCc--eeEEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEE
Confidence 4568999999999999999999999877653 445555 3344455544 8899999999999999999999999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEeCCCCcCC
Q 032487 87 IIVYDITNQASFERAKKWVQELQAQ-GNPNMVMALAGNKADLLDA 130 (139)
Q Consensus 87 i~v~~~~~~~s~~~~~~~~~~~~~~-~~~~~p~ivv~~k~D~~~~ 130 (139)
++|||++++.+++.+..|+..+... ...+.|+++|+||+|+.+.
T Consensus 101 ilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~ 145 (192)
T 2b6h_A 101 IFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNA 145 (192)
T ss_dssp EEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred EEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCC
Confidence 9999999999999999998887653 2357999999999999765
No 94
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.94 E-value=1.3e-25 Score=145.15 Aligned_cols=120 Identities=23% Similarity=0.375 Sum_probs=99.2
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEE
Q 032487 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 86 (139)
Q Consensus 7 ~~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 86 (139)
+...+||+++|++|+|||||++++.+..+. .+.++.+. ....+..++ ..+.+||++|++.+...+..++.++|++
T Consensus 13 ~~~~~ki~ivG~~~vGKSsL~~~l~~~~~~-~~~~t~g~--~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ 87 (181)
T 1fzq_A 13 PDQEVRILLLGLDNAGKTTLLKQLASEDIS-HITPTQGF--NIKSVQSQG--FKLNVWDIGGQRKIRPYWRSYFENTDIL 87 (181)
T ss_dssp CSSCEEEEEEESTTSSHHHHHHHHCCSCCE-EEEEETTE--EEEEEEETT--EEEEEEECSSCGGGHHHHHHHHTTCSEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhcCCCC-cccCcCCe--EEEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEE
Confidence 356899999999999999999999987543 34556663 344455554 7899999999999998889999999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEeCCCCcCCc
Q 032487 87 IIVYDITNQASFERAKKWVQELQAQ-GNPNMVMALAGNKADLLDAR 131 (139)
Q Consensus 87 i~v~~~~~~~s~~~~~~~~~~~~~~-~~~~~p~ivv~~k~D~~~~~ 131 (139)
++|||++++.+++.+..|+..+... ...+.|+++|+||+|+.+..
T Consensus 88 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~ 133 (181)
T 1fzq_A 88 IYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAA 133 (181)
T ss_dssp EEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCC
T ss_pred EEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCC
Confidence 9999999999999999888876543 23678999999999997654
No 95
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.94 E-value=1.4e-26 Score=150.07 Aligned_cols=123 Identities=24% Similarity=0.515 Sum_probs=93.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhC--CCCcccccceeeEEEEEEEEE---CCcEEEEEEEeCCCcccccccchhhhcCCC
Q 032487 10 NAKLVLLGDVGAGKSSLVLRFVKG--QFIEFQESTIGAAFFSQTLAV---NDATVKFEIWDTAGQERYHSLAPMYYRGAA 84 (139)
Q Consensus 10 ~~ki~i~G~~~~GKssli~~l~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~ 84 (139)
.+||+++|++|||||||+++|.+. .+...+.++.+.++....+.. ++..+.+.+||++|++.+...+..++.+++
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 579999999999999999999984 344445677777765555443 234578999999999999998888999999
Q ss_pred EEEEEEECCCH-HHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCCcCC
Q 032487 85 AAIIVYDITNQ-ASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKV 133 (139)
Q Consensus 85 ~~i~v~~~~~~-~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~~~v 133 (139)
++++|||++++ .+++.+..|+..+.... .+.|+++|+||+|+.+.+.+
T Consensus 82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~ 130 (184)
T 2zej_A 82 LYLAVYDLSKGQAEVDAMKPWLFNIKARA-SSSPVILVGTHLDVSDEKQR 130 (184)
T ss_dssp EEEEEEEGGGCHHHHHTHHHHHHHHHHHC-TTCEEEEEEECGGGCCHHHH
T ss_pred EEEEEEeCCcchhHHHHHHHHHHHHHhhC-CCCcEEEEEECCCcccchhh
Confidence 99999999997 58999999999987753 47899999999999875543
No 96
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.93 E-value=2e-25 Score=143.98 Aligned_cols=118 Identities=28% Similarity=0.442 Sum_probs=95.4
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEEE
Q 032487 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (139)
Q Consensus 8 ~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 87 (139)
+..+||+++|++|+|||||++++.+..+ ..+.++.+.. ...+.+++ ..+.+||+||++.+...+..++.++|+++
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 90 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFN--VETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAVI 90 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCC--EEEEEETT--EEEEEEEEC----CCTTGGGTTTTEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccc--eEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 5789999999999999999999998776 3355566533 34445554 88999999999999999999999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCCCCcCC
Q 032487 88 IVYDITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDA 130 (139)
Q Consensus 88 ~v~~~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~~k~D~~~~ 130 (139)
+|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 134 (183)
T 1moz_A 91 FVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGA 134 (183)
T ss_dssp EEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTC
T ss_pred EEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCC
Confidence 9999999999999999988877643 467899999999999764
No 97
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.93 E-value=4.3e-25 Score=143.28 Aligned_cols=118 Identities=28% Similarity=0.446 Sum_probs=98.3
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEEE
Q 032487 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (139)
Q Consensus 8 ~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 87 (139)
++.+||+++|++|+|||||++++....+.. +.++.+.. ...+..++ ..+.+||+||++.+...+..+++++|+++
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 94 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVGVN--LETLQYKN--ISFEVWDLGGQTGVRPYWRCYFSDTDAVI 94 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTTCC--EEEEEETT--EEEEEEEECCSSSSCCCCSSSSTTCCEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCceE--EEEEEECC--EEEEEEECCCCHhHHHHHHHHhhcCCEEE
Confidence 578999999999999999999998776653 44555533 33444554 78999999999999999999999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCCCCcCC
Q 032487 88 IVYDITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDA 130 (139)
Q Consensus 88 ~v~~~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~~k~D~~~~ 130 (139)
+|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.
T Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 138 (189)
T 2x77_A 95 YVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDA 138 (189)
T ss_dssp EEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTC
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCC
Confidence 9999999999999988888776542 357999999999999765
No 98
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.92 E-value=2e-24 Score=150.92 Aligned_cols=121 Identities=31% Similarity=0.546 Sum_probs=104.7
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEEE
Q 032487 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (139)
Q Consensus 8 ~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 87 (139)
...+||+++|.+|+|||||++++.+..+...+.++.+..+ ...+..++..+.+.+||++|++.+...+..++..+|+++
T Consensus 153 ~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 231 (332)
T 2wkq_A 153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL 231 (332)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEE-EEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEE
T ss_pred cceeEEEEECCCCCChHHHHHHHHhCCCCcccCCccccee-EEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEE
Confidence 3468999999999999999999999888766667766544 555677888889999999999999999999999999999
Q ss_pred EEEECCCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEeCCCCcCC
Q 032487 88 IVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLLDA 130 (139)
Q Consensus 88 ~v~~~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~~k~D~~~~ 130 (139)
+|||++++.+++.+. .|+..+.... .+.|+++|+||+|+.+.
T Consensus 232 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~ 274 (332)
T 2wkq_A 232 ICFSLVSPASFHHVRAKWYPEVRHHC-PNTPIILVGTKLDLRDD 274 (332)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC-TTSCEEEEEECHHHHTC
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhhC-CCCcEEEEEEchhcccc
Confidence 999999999999987 7888888764 48999999999999654
No 99
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.87 E-value=2.6e-27 Score=155.58 Aligned_cols=122 Identities=32% Similarity=0.574 Sum_probs=102.3
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEE
Q 032487 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 86 (139)
Q Consensus 7 ~~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 86 (139)
..+.+||+++|.+|+|||||+++|.+..+...+.++.+..+ ...+..++..+.+.+||+||++.+...+..++.++|++
T Consensus 27 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i 105 (204)
T 3th5_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVF 105 (204)
Confidence 45789999999999999999999998877665556655433 44455666678899999999999999999999999999
Q ss_pred EEEEECCCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEeCCCCcCC
Q 032487 87 IIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLLDA 130 (139)
Q Consensus 87 i~v~~~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~~k~D~~~~ 130 (139)
++|||++++.+++.+. .|+..+.... .+.|+++|+||+|+.+.
T Consensus 106 ilv~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~ 149 (204)
T 3th5_A 106 LICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDD 149 (204)
Confidence 9999999999999987 7888877653 37899999999999764
No 100
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.92 E-value=7.5e-25 Score=143.17 Aligned_cols=120 Identities=24% Similarity=0.315 Sum_probs=89.8
Q ss_pred CCcceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEE--EEEEEC-CcEEEEEEEeCCCcccccccc---hhh
Q 032487 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFS--QTLAVN-DATVKFEIWDTAGQERYHSLA---PMY 79 (139)
Q Consensus 6 ~~~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~i~d~~g~~~~~~~~---~~~ 79 (139)
...+.+||+++|.+|+|||||++++.+.. ... ++.+.++.. ....+. +..+.+.+||++|++.+.... ..+
T Consensus 16 ~~~~~~ki~~vG~~~vGKTsLi~~l~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ 92 (196)
T 3llu_A 16 FQGSKPRILLMGLRRSGKSSIQKVVFHKM-SPN--ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMI 92 (196)
T ss_dssp ----CCEEEEEESTTSSHHHHHHHHHSCC-CGG--GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHH
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHHhcC-CCc--ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcccc
Confidence 45678999999999999999999877643 222 233322222 222232 456889999999999987765 789
Q ss_pred hcCCCEEEEEEECCCH--HHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcC
Q 032487 80 YRGAAAAIIVYDITNQ--ASFERAKKWVQELQAQGNPNMVMALAGNKADLLD 129 (139)
Q Consensus 80 ~~~~~~~i~v~~~~~~--~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~ 129 (139)
++++|++++|||++++ .++..+..|+..+... ..+.|+++|+||+|+.+
T Consensus 93 ~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~-~~~~piilv~nK~Dl~~ 143 (196)
T 3llu_A 93 FRGTGALIYVIDAQDDYMEALTRLHITVSKAYKV-NPDMNFEVFIHKVDGLS 143 (196)
T ss_dssp HHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHH-CTTCEEEEEEECGGGSC
T ss_pred cccCCEEEEEEECCCchHHHHHHHHHHHHHHHhc-CCCCcEEEEEeccccCc
Confidence 9999999999999997 7777778888877654 46899999999999765
No 101
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.92 E-value=8.8e-24 Score=139.59 Aligned_cols=122 Identities=22% Similarity=0.280 Sum_probs=90.6
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCc-EEEEEEEeCCCcccccc-cchhhhcCCC
Q 032487 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDA-TVKFEIWDTAGQERYHS-LAPMYYRGAA 84 (139)
Q Consensus 7 ~~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~d~~g~~~~~~-~~~~~~~~~~ 84 (139)
+...+||+++|++|+|||||+++|.+..+...+. +.+.++.. +.+++. ...+.+|||||++.+.. ++..++.++|
T Consensus 4 ~~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 80 (214)
T 2fh5_B 4 KSSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQT-SITDSSAI--YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSAR 80 (214)
T ss_dssp ----CEEEEECSTTSSHHHHHHHHHHSCCCCBCC-CCSCEEEE--EECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCcccccC-CcceeeEE--EEecCCCccEEEEEECCCChhHHHHHHHHHHhhCC
Confidence 4668999999999999999999999988766554 33333333 455543 58899999999999887 7788899999
Q ss_pred EEEEEEECCCHH-HHHHHHH-HHHHHHH--hCCCCCeEEEEEeCCCCcCCc
Q 032487 85 AAIIVYDITNQA-SFERAKK-WVQELQA--QGNPNMVMALAGNKADLLDAR 131 (139)
Q Consensus 85 ~~i~v~~~~~~~-s~~~~~~-~~~~~~~--~~~~~~p~ivv~~k~D~~~~~ 131 (139)
++++|||+++.. ++..... |...+.. ......|+++|+||+|+.+..
T Consensus 81 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 131 (214)
T 2fh5_B 81 AVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAK 131 (214)
T ss_dssp EEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCC
T ss_pred EEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcc
Confidence 999999999853 4555544 4444433 224578999999999998664
No 102
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.91 E-value=2.8e-24 Score=149.43 Aligned_cols=118 Identities=20% Similarity=0.356 Sum_probs=92.9
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHhCCCC---cccccceeeEEEEEEEEECCcEEEEEEEeCCCcccc-----cccchhhh
Q 032487 9 INAKLVLLGDVGAGKSSLVLRFVKGQFI---EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERY-----HSLAPMYY 80 (139)
Q Consensus 9 ~~~ki~i~G~~~~GKssli~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~-----~~~~~~~~ 80 (139)
..+||+++|++|+|||||++++.+.... ..+.+|.+..+. ...+++ .+.+.+||+||++.+ ...+..++
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~--~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~ 78 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHS--HLRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIF 78 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEE--EEEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEE--EEEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHh
Confidence 4689999999999999999999876322 234455555443 334433 588999999999988 67788889
Q ss_pred cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC--CCCCeEEEEEeCCCCcC
Q 032487 81 RGAAAAIIVYDITNQASFERAKKWVQELQAQG--NPNMVMALAGNKADLLD 129 (139)
Q Consensus 81 ~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~--~~~~p~ivv~~k~D~~~ 129 (139)
+++|++++|||++++.+++.+..|...+.... .++.|+++|+||+|+.+
T Consensus 79 ~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~ 129 (307)
T 3r7w_A 79 QMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQ 129 (307)
T ss_dssp TTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSC
T ss_pred ccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccc
Confidence 99999999999999999998877755544321 45799999999999977
No 103
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.91 E-value=5e-24 Score=136.74 Aligned_cols=116 Identities=21% Similarity=0.248 Sum_probs=90.4
Q ss_pred CCcceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCE
Q 032487 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 85 (139)
Q Consensus 6 ~~~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ 85 (139)
..+..++|+++|++|+|||||+++|.+..+...+.++.+.++....+..++ ..+.+||+||++.+...+..++..+|+
T Consensus 4 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 81 (178)
T 2lkc_A 4 MVERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVND--KKITFLDTPGHEAFTTMRARGAQVTDI 81 (178)
T ss_dssp TCCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETT--EEEEESCCCSSSSSSCSCCSSCCCCCE
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCC--ceEEEEECCCCHHHHHHHHHHHhhCCE
Confidence 346789999999999999999999999887765555555444455556666 567899999999999988888999999
Q ss_pred EEEEEECCCH---HHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCC
Q 032487 86 AIIVYDITNQ---ASFERAKKWVQELQAQGNPNMVMALAGNKADLLDA 130 (139)
Q Consensus 86 ~i~v~~~~~~---~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~ 130 (139)
+++|+|++++ .+++.+ ......+.|+++|+||+|+.+.
T Consensus 82 ~i~v~d~~~~~~~~~~~~l-------~~~~~~~~p~ilv~nK~Dl~~~ 122 (178)
T 2lkc_A 82 VILVVAADDGVMPQTVEAI-------NHAKAANVPIIVAINKMDKPEA 122 (178)
T ss_dssp EEEEEETTCCCCHHHHHHH-------HHHGGGSCCEEEEEETTTSSCS
T ss_pred EEEEEECCCCCcHHHHHHH-------HHHHhCCCCEEEEEECccCCcC
Confidence 9999999883 343322 2222347899999999999763
No 104
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.90 E-value=2.8e-24 Score=149.51 Aligned_cols=113 Identities=18% Similarity=0.241 Sum_probs=85.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCc---ccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccc---cchhhhcCCCE
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKGQFIE---FQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHS---LAPMYYRGAAA 85 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~---~~~~~~~~~~~ 85 (139)
||+++|+.|+||||+++++.+...+. ...+|.+.++.. ++ ..+++++|||+|+++|.. .+..+++++++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~----v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~ 75 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH----FS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGA 75 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE----EC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE----Ec-cEEEEEEEECCCchhccchhhhhhhhccCCCE
Confidence 78999999999999999887553322 245666665532 22 347899999999999964 35788999999
Q ss_pred EEEEEECCCH--HHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCC
Q 032487 86 AIIVYDITNQ--ASFERAKKWVQELQAQGNPNMVMALAGNKADLLDA 130 (139)
Q Consensus 86 ~i~v~~~~~~--~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~ 130 (139)
+++|||++++ .++.....|+..+... .++.|+++++||+|+.++
T Consensus 76 ~IlV~Ditd~~~~~~~~l~~~l~~~~~~-~~~ipillvgNK~DL~~~ 121 (331)
T 3r7w_B 76 LVYVIDSQDEYINAITNLAMIIEYAYKV-NPSINIEVLIHKVDGLSE 121 (331)
T ss_dssp EEEECCCSSCTTHHHHHHHHHHHHHHHH-CTTCEEEEECCCCCSSCS
T ss_pred EEEEEECCchHHHHHHHHHHHHHHHhhc-CCCCcEEEEEECcccCch
Confidence 9999999997 3444444556655554 457999999999999764
No 105
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.90 E-value=5.9e-23 Score=150.82 Aligned_cols=118 Identities=27% Similarity=0.519 Sum_probs=99.1
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEEE
Q 032487 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (139)
Q Consensus 8 ~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 87 (139)
...+||+++|.+|+|||||+++|.+..+.. +.+|.+..+ ..+.+++ +.+.+|||+|++.+...+..+++++|+++
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~~~~~~-~~~T~~~~~--~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i 394 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNV--ETVTYKN--VKFNVWDVGGQDKIRPLWRHYYTGTQGLI 394 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSSEEE--EEEESSS--CEEEEEEECCCGGGSGGGGGGGTTCCEEE
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhcCCCCC-cCCccceeE--EEEEeCC--EEEEEEECCCcHHHHHHHHHHhccCCEEE
Confidence 457999999999999999999999988543 455666443 3334443 78999999999999999999999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCCCCcCC
Q 032487 88 IVYDITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDA 130 (139)
Q Consensus 88 ~v~~~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~~k~D~~~~ 130 (139)
+|||++++.+|+.+..|+..+.... ..+.|+++|+||+|+.+.
T Consensus 395 ~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~ 438 (497)
T 3lvq_E 395 FVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA 438 (497)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSC
T ss_pred EEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcC
Confidence 9999999999999998888876642 367999999999999764
No 106
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.90 E-value=5.7e-24 Score=138.32 Aligned_cols=118 Identities=16% Similarity=0.246 Sum_probs=90.1
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHhCCCCcc---cccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcC-
Q 032487 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEF---QESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG- 82 (139)
Q Consensus 7 ~~~~~ki~i~G~~~~GKssli~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~- 82 (139)
....++|+++|++|+|||||+++|.+..+... ..++.+ .......+.+||+||++.+...+..++..
T Consensus 45 ~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~---------~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 115 (193)
T 2ged_A 45 GSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSA---------ADYDGSGVTLVDFPGHVKLRYKLSDYLKTR 115 (193)
T ss_dssp -CCCCEEEEECCTTSSHHHHHHHHHHSSCC---------------------CCCCTTCSEEEETTCCBSSCCHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCcee---------eeecCCeEEEEECCCCchHHHHHHHHHHhh
Confidence 35678999999999999999999998875431 111111 11133578999999999888877777765
Q ss_pred ---CCEEEEEEECC-CHHHHHHHHHHHHHHHHh----CCCCCeEEEEEeCCCCcCCcCC
Q 032487 83 ---AAAAIIVYDIT-NQASFERAKKWVQELQAQ----GNPNMVMALAGNKADLLDARKV 133 (139)
Q Consensus 83 ---~~~~i~v~~~~-~~~s~~~~~~~~~~~~~~----~~~~~p~ivv~~k~D~~~~~~v 133 (139)
+|++++|||++ +..++..+..|+..+... ...+.|+++|+||+|+.+.+.+
T Consensus 116 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~ 174 (193)
T 2ged_A 116 AKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPP 174 (193)
T ss_dssp GGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCH
T ss_pred cccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCH
Confidence 89999999999 899999988888777653 2357999999999999876544
No 107
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.90 E-value=2.4e-23 Score=146.00 Aligned_cols=119 Identities=23% Similarity=0.456 Sum_probs=92.2
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEEE
Q 032487 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (139)
Q Consensus 8 ~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 87 (139)
...+||+|+|.+++|||||+++|.+..+.. ..++.+..+ ..+..++ +.+.+|||||++.+...+..+++.+|+++
T Consensus 163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~-~~pT~~~~~--~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~ad~vi 237 (329)
T 3o47_A 163 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV--ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLI 237 (329)
T ss_dssp CCSEEEEEEESTTSSHHHHHHHTCSSCCEE-EEEETTEEE--EEEEETT--EEEEEEECC-----CCSHHHHHTTEEEEE
T ss_pred cCcceEEEECCCCccHHHHHHHHhCCCCCC-cccccceEE--EEEecCc--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 356799999999999999999999887654 334554333 3334444 78999999999999999999999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEeCCCCcCCc
Q 032487 88 IVYDITNQASFERAKKWVQELQAQ-GNPNMVMALAGNKADLLDAR 131 (139)
Q Consensus 88 ~v~~~~~~~s~~~~~~~~~~~~~~-~~~~~p~ivv~~k~D~~~~~ 131 (139)
+|||++++.+|+.+..|+..+... ...+.|+++|+||+|+.+..
T Consensus 238 lV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~ 282 (329)
T 3o47_A 238 FVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM 282 (329)
T ss_dssp EEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC
T ss_pred EEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCccc
Confidence 999999999999988887776553 23589999999999997653
No 108
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.90 E-value=5.7e-24 Score=140.85 Aligned_cols=119 Identities=18% Similarity=0.264 Sum_probs=93.9
Q ss_pred CCcceeEEEEEcCCCCcHHHHHHHHHhCCCCcc---cccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcC
Q 032487 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEF---QESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82 (139)
Q Consensus 6 ~~~~~~ki~i~G~~~~GKssli~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~ 82 (139)
.+...++|+++|++|+|||||+++|.+..+... +.++.+. ......+.+||+||++.+...+..++..
T Consensus 8 ~~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~---------~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 78 (218)
T 1nrj_B 8 QKSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAA---------DYDGSGVTLVDFPGHVKLRYKLSDYLKT 78 (218)
T ss_dssp --CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEET---------TGGGSSCEEEECCCCGGGTHHHHHHHHH
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEE---------EeeCceEEEEECCCcHHHHHHHHHHHHh
Confidence 356789999999999999999999998876432 2222221 1134678999999999998888887776
Q ss_pred ----CCEEEEEEECC-CHHHHHHHHHHHHHHHHh----CCCCCeEEEEEeCCCCcCCcCC
Q 032487 83 ----AAAAIIVYDIT-NQASFERAKKWVQELQAQ----GNPNMVMALAGNKADLLDARKV 133 (139)
Q Consensus 83 ----~~~~i~v~~~~-~~~s~~~~~~~~~~~~~~----~~~~~p~ivv~~k~D~~~~~~v 133 (139)
+|++++|+|+. ++.++..+..|+..+... ...+.|+++|+||+|+.+.+.+
T Consensus 79 ~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~ 138 (218)
T 1nrj_B 79 RAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPP 138 (218)
T ss_dssp HGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCH
T ss_pred ccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCH
Confidence 89999999999 888888888888877654 3468999999999999877654
No 109
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.90 E-value=8.2e-25 Score=148.57 Aligned_cols=128 Identities=20% Similarity=0.233 Sum_probs=90.7
Q ss_pred CCcceeEEEEEcCC---------CCcHHHHHHHHHh---CCCCcccccce-eeEEEEEE--------------EEECCcE
Q 032487 6 NKNINAKLVLLGDV---------GAGKSSLVLRFVK---GQFIEFQESTI-GAAFFSQT--------------LAVNDAT 58 (139)
Q Consensus 6 ~~~~~~ki~i~G~~---------~~GKssli~~l~~---~~~~~~~~~~~-~~~~~~~~--------------~~~~~~~ 58 (139)
.....+||+++|.+ |+|||||+++|.+ ..+...+.++. +.++.... ...++..
T Consensus 15 ~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 94 (255)
T 3c5h_A 15 YFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVE 94 (255)
T ss_dssp SCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC--------
T ss_pred CCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcE
Confidence 35668999999999 9999999999998 44544444443 22221111 1134566
Q ss_pred EEEEEEe-----------------------CCCcccccccchhhhc---------------------CCCEEEEEEECCC
Q 032487 59 VKFEIWD-----------------------TAGQERYHSLAPMYYR---------------------GAAAAIIVYDITN 94 (139)
Q Consensus 59 ~~~~i~d-----------------------~~g~~~~~~~~~~~~~---------------------~~~~~i~v~~~~~ 94 (139)
+.+.+|| ++|++.+...+..++. ++|++++|||+++
T Consensus 95 ~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~ 174 (255)
T 3c5h_A 95 CKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSR 174 (255)
T ss_dssp -CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC
T ss_pred EEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCC
Confidence 8899999 6677777777777666 7999999999999
Q ss_pred H--HHHHHHHHHHHHHHHh-CCCCCeEEEEEeCCCCcCCcCC
Q 032487 95 Q--ASFERAKKWVQELQAQ-GNPNMVMALAGNKADLLDARKV 133 (139)
Q Consensus 95 ~--~s~~~~~~~~~~~~~~-~~~~~p~ivv~~k~D~~~~~~v 133 (139)
+ .+|+.+..|+..+... ...+.|+++|+||+|+.+.+.+
T Consensus 175 ~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v 216 (255)
T 3c5h_A 175 GMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYI 216 (255)
T ss_dssp ----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHH
T ss_pred CchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHH
Confidence 8 9999999999988764 3357999999999999765443
No 110
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.90 E-value=6.7e-23 Score=130.53 Aligned_cols=118 Identities=18% Similarity=0.155 Sum_probs=84.3
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccc------cchhhhc-
Q 032487 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHS------LAPMYYR- 81 (139)
Q Consensus 9 ~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~------~~~~~~~- 81 (139)
..++++++|++|+|||||+++|.+..+.....++.+.+.....+..++ ..+.+|||||++.+.. +...++.
T Consensus 2 ~~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~ 79 (165)
T 2wji_A 2 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIIN 79 (165)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHhc
Confidence 358999999999999999999998765444444444444444555555 6799999999987652 2344454
Q ss_pred -CCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCCcCCC
Q 032487 82 -GAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVT 134 (139)
Q Consensus 82 -~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~~~v~ 134 (139)
+++++++|+|..+... ...|+..+.. .+.|+++|+||+|+.+.+.++
T Consensus 80 ~~~~~~i~v~D~~~~~~---~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~~~~ 127 (165)
T 2wji_A 80 EKPDLVVNIVDATALER---NLYLTLQLME---MGANLLLALNKMDLAKSLGIE 127 (165)
T ss_dssp HCCSEEEEEEETTCHHH---HHHHHHHHHH---TTCCEEEEEECHHHHHHTTCC
T ss_pred CCCCEEEEEecCCchhH---hHHHHHHHHh---cCCCEEEEEEchHhccccChh
Confidence 8999999999988543 4457766654 368999999999997655444
No 111
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.89 E-value=8.6e-23 Score=136.29 Aligned_cols=126 Identities=15% Similarity=0.146 Sum_probs=84.7
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccc---------cccch
Q 032487 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERY---------HSLAP 77 (139)
Q Consensus 7 ~~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~---------~~~~~ 77 (139)
+...++|+++|.+|+|||||+++|.+..+.....+.............++ ..+.+|||||+... .....
T Consensus 26 ~~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 103 (228)
T 2qu8_A 26 NPHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKL--NKYQIIDTPGLLDRAFENRNTIEMTTIT 103 (228)
T ss_dssp CTTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETT--EEEEEEECTTTTTSCGGGCCHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCC--CeEEEEECCCCcCcccchhhhHHHHHHH
Confidence 45679999999999999999999998876432222222223333333343 78999999998321 11123
Q ss_pred hhhcCCCEEEEEEECCCHHHHHH--HHHHHHHHHHhCCCCCeEEEEEeCCCCcCCcCCCc
Q 032487 78 MYYRGAAAAIIVYDITNQASFER--AKKWVQELQAQGNPNMVMALAGNKADLLDARKVTA 135 (139)
Q Consensus 78 ~~~~~~~~~i~v~~~~~~~s~~~--~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~~~v~~ 135 (139)
.++..+|++++|||++++.+++. ...|+..+... ....|+++|+||+|+.+.++++.
T Consensus 104 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~-~~~~piilv~nK~Dl~~~~~~~~ 162 (228)
T 2qu8_A 104 ALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSV-FSNKSIVIGFNKIDKCNMDSLSI 162 (228)
T ss_dssp HHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTC-C-CCCEEEEEECGGGCC--CCCH
T ss_pred HhhccccEEEEEEecccccCcchHHHHHHHHHHHHh-hcCCcEEEEEeCcccCCchhhHH
Confidence 34678899999999999877642 33566665543 24789999999999988766654
No 112
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.89 E-value=8.6e-23 Score=130.99 Aligned_cols=119 Identities=20% Similarity=0.209 Sum_probs=87.4
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHhCCCC-cccccceeeEEEEEEEEECCcEEEEEEEeCCCccccccc--------chhh
Q 032487 9 INAKLVLLGDVGAGKSSLVLRFVKGQFI-EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSL--------APMY 79 (139)
Q Consensus 9 ~~~ki~i~G~~~~GKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~--------~~~~ 79 (139)
...||+++|++|+|||||+++|.+.... ....+..+.++....+.+++ ..+.+|||||+..+... ...+
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 80 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDG--MPLHIIDTAGLREASDEVERIGIERAWQE 80 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETT--EEEEEEECCCCSCCSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECC--eEEEEEECCCcccchhHHHHHHHHHHHHH
Confidence 4579999999999999999999987542 12233333444556666766 45899999998653211 1135
Q ss_pred hcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCC
Q 032487 80 YRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDA 130 (139)
Q Consensus 80 ~~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~ 130 (139)
++.+|++++|||++++.+++ ...|+..+......+.|+++|+||+|+.++
T Consensus 81 ~~~ad~~i~v~D~~~~~s~~-~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~ 130 (172)
T 2gj8_A 81 IEQADRVLFMVDGTTTDAVD-PAEIWPEFIARLPAKLPITVVRNKADITGE 130 (172)
T ss_dssp HHTCSEEEEEEETTTCCCCS-HHHHCHHHHHHSCTTCCEEEEEECHHHHCC
T ss_pred HHhCCEEEEEEECCCCCCHH-HHHHHHHHHHhcccCCCEEEEEECccCCcc
Confidence 78999999999999987765 456777777665567999999999998643
No 113
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.88 E-value=1.9e-22 Score=130.56 Aligned_cols=121 Identities=19% Similarity=0.174 Sum_probs=91.0
Q ss_pred CCcceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCccccc------ccchhh
Q 032487 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYH------SLAPMY 79 (139)
Q Consensus 6 ~~~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~------~~~~~~ 79 (139)
+..+.++|+++|++|+|||||+++|.+..+.....++.+.+.....+..++ ..+.+|||||++.+. .++..+
T Consensus 3 ~~~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 80 (188)
T 2wjg_A 3 SHMKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDY 80 (188)
T ss_dssp CCCCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCccccccHHHHHHHHH
Confidence 345679999999999999999999998765544455555555566666665 789999999998764 234445
Q ss_pred hc--CCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCCcCCC
Q 032487 80 YR--GAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVT 134 (139)
Q Consensus 80 ~~--~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~~~v~ 134 (139)
+. .++++++++|..+ ++....|+..+.. .+.|+++|+||+|+.+.+.+.
T Consensus 81 ~~~~~~~~~i~v~d~~~---~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~ 131 (188)
T 2wjg_A 81 IINEKPDLVVNIVDATA---LERNLYLTLQLME---MGANLLLALNKMDLAKSLGIE 131 (188)
T ss_dssp HHHHCCSEEEEEEEGGG---HHHHHHHHHHHHT---TTCCEEEEEECHHHHHHTTCC
T ss_pred HhccCCCEEEEEecchh---HHHHHHHHHHHHh---cCCCEEEEEEhhhccccccch
Confidence 53 5899999999865 4556677776664 468999999999997655443
No 114
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.88 E-value=1.6e-22 Score=149.76 Aligned_cols=126 Identities=21% Similarity=0.336 Sum_probs=94.9
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEE------EEE--CCcEEEEEEEeCCCcccccccchh
Q 032487 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQT------LAV--NDATVKFEIWDTAGQERYHSLAPM 78 (139)
Q Consensus 7 ~~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~------~~~--~~~~~~~~i~d~~g~~~~~~~~~~ 78 (139)
....+||+++|.+|||||||++++.+..+...+.++.+.++.... +.. ++....+.+||+||++.+...+..
T Consensus 38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~ 117 (535)
T 3dpu_A 38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQF 117 (535)
T ss_dssp CCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHH
T ss_pred cccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHH
Confidence 456899999999999999999999998887777788887766542 112 334588999999999999999999
Q ss_pred hhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCCcCCCcc
Q 032487 79 YYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAE 136 (139)
Q Consensus 79 ~~~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~~~v~~~ 136 (139)
+++.+|++++|+|+++. +.+..|+..+.... .+.|+++|+||+|+.+.+.++.+
T Consensus 118 ~l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~-~~~pvilV~NK~Dl~~~~~v~~~ 171 (535)
T 3dpu_A 118 FMTRSSVYMLLLDSRTD---SNKHYWLRHIEKYG-GKSPVIVVMNKIDENPSYNIEQK 171 (535)
T ss_dssp HHHSSEEEEEEECGGGG---GGHHHHHHHHHHHS-SSCCEEEEECCTTTCTTCCCCHH
T ss_pred HccCCcEEEEEEeCCCc---hhHHHHHHHHHHhC-CCCCEEEEEECCCcccccccCHH
Confidence 99999999999998765 45678888888874 47899999999999887666544
No 115
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.87 E-value=3.6e-22 Score=129.91 Aligned_cols=119 Identities=18% Similarity=0.245 Sum_probs=80.0
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCC----------cccccccch
Q 032487 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAG----------QERYHSLAP 77 (139)
Q Consensus 8 ~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g----------~~~~~~~~~ 77 (139)
...++|+++|++|+|||||+++|.+..+...+.++.+.+........++ ++.+||||| ++.+...+.
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 97 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRMIE 97 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHHHHH
Confidence 4579999999999999999999998875544455555444444444443 589999999 666666666
Q ss_pred hhhcCC---CEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCCcCC
Q 032487 78 MYYRGA---AAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKV 133 (139)
Q Consensus 78 ~~~~~~---~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~~~v 133 (139)
.++..+ |++++|+|++++.++.... ++..+.. ...|+++|+||+|+.+.+++
T Consensus 98 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~---~~~p~i~v~nK~Dl~~~~~~ 152 (195)
T 1svi_A 98 TYITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLKY---YGIPVIVIATKADKIPKGKW 152 (195)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHH---TTCCEEEEEECGGGSCGGGH
T ss_pred HHHhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcccCChHHH
Confidence 666666 9999999999876665432 2222322 46899999999999876543
No 116
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.87 E-value=1.9e-21 Score=122.71 Aligned_cols=114 Identities=18% Similarity=0.147 Sum_probs=76.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCC-cccccceeeEEEEEEEEECCcEEEEEEEeCCCcccc-------cccchhhhcC
Q 032487 11 AKLVLLGDVGAGKSSLVLRFVKGQFI-EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERY-------HSLAPMYYRG 82 (139)
Q Consensus 11 ~ki~i~G~~~~GKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~-------~~~~~~~~~~ 82 (139)
.||+++|++|+|||||++++.+.... ....+....+.....+..++ ..+.+||+||+..+ ...+..++..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 79 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDR--GRFLLVDTGGLWSGDKWEKKIQEKVDRALED 79 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETT--EEEEEEECGGGCSSSSCCHHHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCC--ceEEEEECCCCCCccchHHHHHHHHHHHHHh
Confidence 58999999999999999999987643 22223333333444555555 47899999998763 3344556889
Q ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCC
Q 032487 83 AAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDA 130 (139)
Q Consensus 83 ~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~ 130 (139)
+|++++|+|.+++.+... ..+...+.. .+.|+++|+||+|+.+.
T Consensus 80 ~~~~i~v~d~~~~~~~~~-~~~~~~~~~---~~~p~ilv~nK~Dl~~~ 123 (161)
T 2dyk_A 80 AEVVLFAVDGRAELTQAD-YEVAEYLRR---KGKPVILVATKVDDPKH 123 (161)
T ss_dssp CSEEEEEEESSSCCCHHH-HHHHHHHHH---HTCCEEEEEECCCSGGG
T ss_pred CCEEEEEEECCCcccHhH-HHHHHHHHh---cCCCEEEEEECcccccc
Confidence 999999999998543321 122222222 36889999999999765
No 117
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.86 E-value=3.1e-21 Score=131.16 Aligned_cols=119 Identities=16% Similarity=0.069 Sum_probs=87.6
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccc------hhhh-
Q 032487 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLA------PMYY- 80 (139)
Q Consensus 8 ~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~------~~~~- 80 (139)
.+.++|+++|++|||||||+|+|.+..+.....+..+.......+..++ ..+.+||+||...+...+ ..++
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~e~v~~~~~~ 80 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKG--YTINLIDLPGTYSLGYSSIDEKIARDYLL 80 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSSCCSSSHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECC--eEEEEEECCCcCccCCCCHHHHHHHHHHh
Confidence 4678999999999999999999998776543444444444444444444 789999999998776533 4444
Q ss_pred -cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCCcCCC
Q 032487 81 -RGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVT 134 (139)
Q Consensus 81 -~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~~~v~ 134 (139)
..+|++++|+|+++..+. ..|...+.. .+.|+++|+||+|+.+.+.++
T Consensus 81 ~~~~d~ii~V~D~t~~~~~---~~~~~~l~~---~~~pvilv~NK~Dl~~~~~i~ 129 (258)
T 3a1s_A 81 KGDADLVILVADSVNPEQS---LYLLLEILE---MEKKVILAMTAIDEAKKTGMK 129 (258)
T ss_dssp HSCCSEEEEEEETTSCHHH---HHHHHHHHT---TTCCEEEEEECHHHHHHTTCC
T ss_pred hcCCCEEEEEeCCCchhhH---HHHHHHHHh---cCCCEEEEEECcCCCCccchH
Confidence 589999999999986543 345555543 368999999999997665554
No 118
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.86 E-value=5.7e-21 Score=130.08 Aligned_cols=125 Identities=16% Similarity=0.112 Sum_probs=85.9
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHhCCCCcc-cccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhc-----
Q 032487 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEF-QESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYR----- 81 (139)
Q Consensus 8 ~~~~ki~i~G~~~~GKssli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~----- 81 (139)
...++|+++|.+|+|||||+++|++...... ..+..........+..++ ..+.+|||||+..+......+++
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~liDTpG~~~~~~~~~~~~~~i~~~ 111 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGG--FTINIIDTPGLVEAGYVNHQALELIKGF 111 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECC--eeEEEEECCCCCCcccchHHHHHHHHHH
Confidence 4689999999999999999999998775321 222222222333344454 68999999999877665544433
Q ss_pred ----CCCEEEEEEECCCHHHHHH-HHHHHHHHHHhCCC--CCeEEEEEeCCCCcCCcCCCc
Q 032487 82 ----GAAAAIIVYDITNQASFER-AKKWVQELQAQGNP--NMVMALAGNKADLLDARKVTA 135 (139)
Q Consensus 82 ----~~~~~i~v~~~~~~~s~~~-~~~~~~~~~~~~~~--~~p~ivv~~k~D~~~~~~v~~ 135 (139)
++|++++|++++... +.. ...|+..+...... ..|+++|+||+|+.+.+..+.
T Consensus 112 l~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~ 171 (262)
T 3def_A 112 LVNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDELSY 171 (262)
T ss_dssp TTTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCSTTCCH
T ss_pred HhcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCCCCccH
Confidence 789999999987654 333 34677777664332 348999999999975544443
No 119
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.86 E-value=1.4e-21 Score=132.76 Aligned_cols=115 Identities=16% Similarity=0.102 Sum_probs=86.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccc----------cchhhh
Q 032487 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHS----------LAPMYY 80 (139)
Q Consensus 11 ~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~----------~~~~~~ 80 (139)
.+|+++|++|||||||+|+|.+........+..+.+.....+..++ ..+.+|||||...+.. +...++
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~ 79 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGE--HLIEITDLPGVYSLVANAEGISQDEQIAAQSV 79 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETT--EEEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECC--eEEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence 4899999999999999999998875544555555566666666666 4899999999876654 344556
Q ss_pred --cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCCcCC
Q 032487 81 --RGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKV 133 (139)
Q Consensus 81 --~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~~~v 133 (139)
.++|++++|+|+++..+...+..+ +. ..+.|+++|+||+|+.+.+.+
T Consensus 80 ~~~~~d~vi~VvDas~~~~~~~l~~~---l~---~~~~pvilv~NK~Dl~~~~~~ 128 (256)
T 3iby_A 80 IDLEYDCIINVIDACHLERHLYLTSQ---LF---ELGKPVVVALNMMDIAEHRGI 128 (256)
T ss_dssp HHSCCSEEEEEEEGGGHHHHHHHHHH---HT---TSCSCEEEEEECHHHHHHTTC
T ss_pred hhCCCCEEEEEeeCCCchhHHHHHHH---HH---HcCCCEEEEEEChhcCCcCCc
Confidence 889999999999986554433322 22 347899999999998765443
No 120
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.85 E-value=2.3e-21 Score=132.87 Aligned_cols=116 Identities=16% Similarity=0.135 Sum_probs=84.3
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCccccccc----------chh
Q 032487 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSL----------APM 78 (139)
Q Consensus 9 ~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~----------~~~ 78 (139)
++++|+++|++|+|||||+|+|.+........+..+.+.....+..++ ..+.+|||||+..+... ...
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~e~i~~~ 79 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTD--HQVTLVDLPGTYSLTTISSQTSLDEQIACH 79 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSS--CEEEEEECCCCSCSCC----CCHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCC--CceEEEECcCCCccccccccCCHHHHHHHH
Confidence 468999999999999999999998875444445555555556565555 56889999998776532 222
Q ss_pred h--hcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCCcC
Q 032487 79 Y--YRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARK 132 (139)
Q Consensus 79 ~--~~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~~~ 132 (139)
+ ...+|++++|+|+++..... .|...+... +.|+++|+||+|+.+.+.
T Consensus 80 ~~~~~~~d~ii~VvD~~~~~~~~---~~~~~l~~~---~~p~ivv~NK~Dl~~~~~ 129 (274)
T 3i8s_A 80 YILSGDADLLINVVDASNLERNL---YLTLQLLEL---GIPCIVALNMLDIAEKQN 129 (274)
T ss_dssp HHHHTCCSEEEEEEEGGGHHHHH---HHHHHHHHH---TCCEEEEEECHHHHHHTT
T ss_pred HHhhcCCCEEEEEecCCChHHHH---HHHHHHHhc---CCCEEEEEECccchhhhh
Confidence 2 26899999999998865543 344444433 689999999999876543
No 121
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.85 E-value=6.3e-22 Score=128.09 Aligned_cols=115 Identities=18% Similarity=0.237 Sum_probs=82.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCC-----------cccccccchhh
Q 032487 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAG-----------QERYHSLAPMY 79 (139)
Q Consensus 11 ~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g-----------~~~~~~~~~~~ 79 (139)
+||+++|++|+|||||++++.+..+...+.++... ....+... .+.+||+|| ++.+...+..+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~--~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 75 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTR--KIIEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHF 75 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTT--SCEEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccc--eeEEEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHH
Confidence 68999999999999999999998776555444332 22233333 589999999 56666666667
Q ss_pred hcC-CCEEEEEEECCCHHHHHHH-HHHHHH---------HHHhCCCCCeEEEEEeCCCCcCCc
Q 032487 80 YRG-AAAAIIVYDITNQASFERA-KKWVQE---------LQAQGNPNMVMALAGNKADLLDAR 131 (139)
Q Consensus 80 ~~~-~~~~i~v~~~~~~~s~~~~-~~~~~~---------~~~~~~~~~p~ivv~~k~D~~~~~ 131 (139)
+.. ++++++++++.|..++..+ ..|... +......+.|+++|+||+|+.+.+
T Consensus 76 ~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 138 (190)
T 2cxx_A 76 IEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV 138 (190)
T ss_dssp HHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH
T ss_pred HHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH
Confidence 776 7777777777777777765 566542 122223578999999999997754
No 122
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.84 E-value=6.7e-21 Score=132.51 Aligned_cols=121 Identities=13% Similarity=0.106 Sum_probs=88.1
Q ss_pred CCCcceeEEEEEcCCCCcHHHHHHHHHhCCCCccc-ccceeeEEEEEEEEECCcEEEEEEEeCCCccccc----------
Q 032487 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQ-ESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYH---------- 73 (139)
Q Consensus 5 ~~~~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~---------- 73 (139)
...+..-.++++|.+|+|||||+|+|++.++.... .+.............+ ...++.+|||||+....
T Consensus 5 ~~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~-~~~~i~lvDTPG~~~~~~~~~l~~~~~ 83 (308)
T 3iev_A 5 HHHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIP-NEAQIIFLDTPGIYEPKKSDVLGHSMV 83 (308)
T ss_dssp --CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET-TTEEEEEEECCCCCCCCTTCHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecC-CCCeEEEEECcCCCccccchhHHHHHH
Confidence 34567889999999999999999999998765321 1111111222223333 14789999999986544
Q ss_pred ccchhhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcC
Q 032487 74 SLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLD 129 (139)
Q Consensus 74 ~~~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~ 129 (139)
.....++..+|++++|+|++++.++.....|+..+.. .+.|+++|+||+|+.+
T Consensus 84 ~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~---~~~pvilV~NK~Dl~~ 136 (308)
T 3iev_A 84 EIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP---LNKPVIVVINKIDKIG 136 (308)
T ss_dssp HHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG---GCCCEEEEEECGGGSS
T ss_pred HHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh---cCCCEEEEEECccCCC
Confidence 4445678899999999999998887777777777665 3689999999999973
No 123
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.84 E-value=1.8e-20 Score=128.14 Aligned_cols=118 Identities=17% Similarity=0.124 Sum_probs=87.6
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccc------cchhhh--
Q 032487 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHS------LAPMYY-- 80 (139)
Q Consensus 9 ~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~------~~~~~~-- 80 (139)
+.++|+++|++|||||||+++|.+........++.+.+.....+..++ ..+.+||+||+..+.. ....++
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 79 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYRE--KEFLVVDLPGIYSLTAHSIDELIARNFILD 79 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETT--EEEEEEECCCCSCCCSSCHHHHHHHHHHHT
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECC--ceEEEEeCCCccccccCCHHHHHHHHhhhc
Confidence 468999999999999999999998876544555666666666666666 5699999999887665 444455
Q ss_pred cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCCcCC
Q 032487 81 RGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKV 133 (139)
Q Consensus 81 ~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~~~v 133 (139)
.++|++++|+|+++.. ....|...+... ...|+++|+||+|+.+.+.+
T Consensus 80 ~~~d~vi~v~D~~~~~---~~~~~~~~~~~~--~~~p~ilv~NK~Dl~~~~~~ 127 (271)
T 3k53_A 80 GNADVIVDIVDSTCLM---RNLFLTLELFEM--EVKNIILVLNKFDLLKKKGA 127 (271)
T ss_dssp TCCSEEEEEEEGGGHH---HHHHHHHHHHHT--TCCSEEEEEECHHHHHHHTC
T ss_pred cCCcEEEEEecCCcch---hhHHHHHHHHhc--CCCCEEEEEEChhcCccccc
Confidence 6799999999998753 333444444443 23899999999998665433
No 124
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.84 E-value=4.7e-20 Score=127.84 Aligned_cols=119 Identities=17% Similarity=0.192 Sum_probs=81.6
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHhCCCCcc-cccceeeEEEEEEEEECCcEEEEEEEeCCCccc--------ccccchh
Q 032487 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEF-QESTIGAAFFSQTLAVNDATVKFEIWDTAGQER--------YHSLAPM 78 (139)
Q Consensus 8 ~~~~ki~i~G~~~~GKssli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~--------~~~~~~~ 78 (139)
.+..+|+++|.+|+|||||+|+|++.++... ..+.............+ ..++.+|||||... +......
T Consensus 5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~--~~~l~l~DTpG~~~~~~~l~~~~~~~~~~ 82 (301)
T 1wf3_A 5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEG--RRQIVFVDTPGLHKPMDALGEFMDQEVYE 82 (301)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET--TEEEEEEECCCCCCCCSHHHHHHHHHHHH
T ss_pred ccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeC--CcEEEEecCccccchhhHHHHHHHHHHHH
Confidence 5567899999999999999999998876432 11111111112222233 47899999999875 3334456
Q ss_pred hhcCCCEEEEEEECCCHHHHHHHHHHH-HHHHHhCCCCCeEEEEEeCCCCcCCc
Q 032487 79 YYRGAAAAIIVYDITNQASFERAKKWV-QELQAQGNPNMVMALAGNKADLLDAR 131 (139)
Q Consensus 79 ~~~~~~~~i~v~~~~~~~s~~~~~~~~-~~~~~~~~~~~p~ivv~~k~D~~~~~ 131 (139)
+++.+|++++|+|++++.+.. ..|+ ..+... ..+.|+++|+||+|+.+..
T Consensus 83 ~l~~ad~il~VvD~~~~~~~~--~~~i~~~l~~~-~~~~p~ilV~NK~Dl~~~~ 133 (301)
T 1wf3_A 83 ALADVNAVVWVVDLRHPPTPE--DELVARALKPL-VGKVPILLVGNKLDAAKYP 133 (301)
T ss_dssp HTSSCSEEEEEEETTSCCCHH--HHHHHHHHGGG-TTTSCEEEEEECGGGCSSH
T ss_pred HHhcCCEEEEEEECCCCCChH--HHHHHHHHHhh-cCCCCEEEEEECcccCCch
Confidence 788999999999998864433 3343 444443 2478999999999997653
No 125
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.83 E-value=1.2e-20 Score=129.04 Aligned_cols=126 Identities=13% Similarity=0.117 Sum_probs=82.5
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchh-------h-
Q 032487 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPM-------Y- 79 (139)
Q Consensus 8 ~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~-------~- 79 (139)
...++|+++|.+|+|||||+|+|++..+.... ...+.+..............+.+|||||...+...... +
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~ 115 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSIS-PFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFL 115 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCC-SSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCccccc-CCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHh
Confidence 45799999999999999999999987753211 11122211222222223478999999998766543321 1
Q ss_pred -hcCCCEEEEEEECCCHHHHHH-HHHHHHHHHHhCCCC--CeEEEEEeCCCCcCCcCCCc
Q 032487 80 -YRGAAAAIIVYDITNQASFER-AKKWVQELQAQGNPN--MVMALAGNKADLLDARKVTA 135 (139)
Q Consensus 80 -~~~~~~~i~v~~~~~~~s~~~-~~~~~~~~~~~~~~~--~p~ivv~~k~D~~~~~~v~~ 135 (139)
...+|++++|+|++.. ++.. ...|+..+....... .|+++|+||+|+...+..+.
T Consensus 116 ~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~~~~~ 174 (270)
T 1h65_A 116 LDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPY 174 (270)
T ss_dssp TTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGGCCH
T ss_pred hcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcCCCCH
Confidence 2368999999998753 2332 346777776543322 69999999999976554433
No 126
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.83 E-value=1.7e-20 Score=126.74 Aligned_cols=122 Identities=16% Similarity=0.160 Sum_probs=75.0
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEE--EEEEEEECCcEEEEEEEeCCCcc--------cccccc
Q 032487 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQE--------RYHSLA 76 (139)
Q Consensus 7 ~~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~d~~g~~--------~~~~~~ 76 (139)
....++|+++|.+|+|||||+|+|++.........+.+.+. .......++ ..+.+|||||.. .+....
T Consensus 18 ~~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~~i 95 (247)
T 3lxw_A 18 GESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDK--CHVEVVDTPDIFSSQVSKTDPGCEER 95 (247)
T ss_dssp --CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETT--EEEEEEECCSCSSTTHHHHSTTSHHH
T ss_pred CCCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECC--cEEEEEECCCCCCCCCCcHHHHHHHH
Confidence 45689999999999999999999998876544333322222 223334444 679999999962 222222
Q ss_pred hhhh----cCCCEEEEEEECCCHHHH-HHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCC
Q 032487 77 PMYY----RGAAAAIIVYDITNQASF-ERAKKWVQELQAQGNPNMVMALAGNKADLLDA 130 (139)
Q Consensus 77 ~~~~----~~~~~~i~v~~~~~~~s~-~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~ 130 (139)
..++ ..+|++++|+|+++.... ..+.+++..+......+.|+++++||+|+.+.
T Consensus 96 ~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~ 154 (247)
T 3lxw_A 96 GHCYLLSAPGPHALLLVTQLGRFTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGG 154 (247)
T ss_dssp HHHHHHHTTCCSEEEEEEETTBCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTC
T ss_pred HHHHHhcCCCCCEEEEEEeCCCCCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcCCC
Confidence 2233 899999999999753221 11223333332221236899999999999653
No 127
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.83 E-value=8.3e-20 Score=122.67 Aligned_cols=124 Identities=17% Similarity=0.210 Sum_probs=76.8
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHhCCCCccccc--ceeeEEEEEEEEECCcEEEEEEEeCCCcc-----------ccc
Q 032487 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQES--TIGAAFFSQTLAVNDATVKFEIWDTAGQE-----------RYH 73 (139)
Q Consensus 7 ~~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~d~~g~~-----------~~~ 73 (139)
....++|+++|.+|+|||||+|+|++........+ +.+..........++ ..+.+|||||.. .+.
T Consensus 26 ~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~ 103 (239)
T 3lxx_A 26 RNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKE--TELVVVDTPGIFDTEVPNAETSKEII 103 (239)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETT--EEEEEEECCSCC-----CHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCC--ceEEEEECCCccCCCCCHHHHHHHHH
Confidence 35579999999999999999999999877554433 233333344455555 578999999943 333
Q ss_pred ccchhhhcCCCEEEEEEECCCHHH--HHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCCcCCC
Q 032487 74 SLAPMYYRGAAAAIIVYDITNQAS--FERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVT 134 (139)
Q Consensus 74 ~~~~~~~~~~~~~i~v~~~~~~~s--~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~~~v~ 134 (139)
......+.++|++++|+|+++... ...+..+...+... ...|+++|+||+|+.+.+.+.
T Consensus 104 ~~~~~~~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~--~~~~~iiv~nK~D~~~~~~~~ 164 (239)
T 3lxx_A 104 RCILLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGER--ARSFMILIFTRKDDLGDTNLH 164 (239)
T ss_dssp HHHHHTTTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHH--HGGGEEEEEECGGGC------
T ss_pred HHHHhcCCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhh--ccceEEEEEeCCccCCcccHH
Confidence 333445677899999999875433 22233333222221 245899999999987665443
No 128
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.83 E-value=8.7e-21 Score=129.81 Aligned_cols=117 Identities=21% Similarity=0.190 Sum_probs=82.5
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCccccc------ccchhhhc-
Q 032487 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYH------SLAPMYYR- 81 (139)
Q Consensus 9 ~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~------~~~~~~~~- 81 (139)
..++|+++|++|||||||+|+|.+........+ |.+.......++. ...+.+|||||+..+. .+...++.
T Consensus 2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~p--g~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~ 78 (272)
T 3b1v_A 2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWP--GVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLS 78 (272)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSS--CCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCcccCCC--CCcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhc
Confidence 357999999999999999999998764333333 3333233333444 4679999999998765 33455554
Q ss_pred -CCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCCcCCC
Q 032487 82 -GAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVT 134 (139)
Q Consensus 82 -~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~~~v~ 134 (139)
.+|++++|+|+++..+ ...|...+.. .+.|+++++||+|+.+.+.+.
T Consensus 79 ~~~d~vi~V~D~t~~e~---~~~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~~ 126 (272)
T 3b1v_A 79 QRADSILNVVDATNLER---NLYLTTQLIE---TGIPVTIALNMIDVLDGQGKK 126 (272)
T ss_dssp TCCSEEEEEEEGGGHHH---HHHHHHHHHH---TCSCEEEEEECHHHHHHTTCC
T ss_pred CCCCEEEEEecCCchHh---HHHHHHHHHh---cCCCEEEEEEChhhCCcCCcH
Confidence 6999999999988654 3455555554 468999999999987654443
No 129
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.83 E-value=5.9e-20 Score=119.12 Aligned_cols=114 Identities=18% Similarity=0.250 Sum_probs=79.0
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCC----------cccccccc
Q 032487 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAG----------QERYHSLA 76 (139)
Q Consensus 7 ~~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g----------~~~~~~~~ 76 (139)
....+||+++|++|+|||||+++|.+..... ..++.+.+........+. ++.+||+|| ++.+...+
T Consensus 20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~t~~~~~~~~~~---~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 95 (195)
T 3pqc_A 20 PPLKGEVAFVGRSNVGKSSLLNALFNRKIAF-VSKTPGKTRSINFYLVNS---KYYFVDLPGYGYAKVSKKERMLWKRLV 95 (195)
T ss_dssp CCTTCEEEEEEBTTSSHHHHHHHHHTSCCSC-CCSSCCCCCCEEEEEETT---TEEEEECCCBSSSCCCHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHcCcccc-ccCCCCCccCeEEEEECC---cEEEEECCCCccccCChhhHHHHHHHH
Confidence 3567899999999999999999999887432 334444433333333332 478999999 55566666
Q ss_pred hhhhcCC---CEEEEEEECCCHHH--HHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCC
Q 032487 77 PMYYRGA---AAAIIVYDITNQAS--FERAKKWVQELQAQGNPNMVMALAGNKADLLDA 130 (139)
Q Consensus 77 ~~~~~~~---~~~i~v~~~~~~~s--~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~ 130 (139)
..++..+ +++++|+|..++.+ ...+..|+.. .+.|+++|+||+|+.++
T Consensus 96 ~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~------~~~p~i~v~nK~Dl~~~ 148 (195)
T 3pqc_A 96 EDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKS------LNIPFTIVLTKMDKVKM 148 (195)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH------TTCCEEEEEECGGGSCG
T ss_pred HHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHH------cCCCEEEEEEChhcCCh
Confidence 6666554 99999999887533 2233334332 26899999999999754
No 130
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.82 E-value=3.6e-20 Score=135.22 Aligned_cols=120 Identities=16% Similarity=0.130 Sum_probs=72.1
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHhCCCC-cccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccc--------hhh
Q 032487 9 INAKLVLLGDVGAGKSSLVLRFVKGQFI-EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLA--------PMY 79 (139)
Q Consensus 9 ~~~ki~i~G~~~~GKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~--------~~~ 79 (139)
..++|+++|.+|+|||||+|+|.+.+.. ....+..+.+.....+..++ ..+.+|||||+..+...+ ..+
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g--~~l~liDT~G~~~~~~~ve~~gi~~~~~~ 309 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRMK 309 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETT--EEEEEEC--------------------CC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCCCcchhHHHHHHHHHHHhh
Confidence 4688999999999999999999987532 22333333344445556665 679999999987655433 335
Q ss_pred hcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCCcC
Q 032487 80 YRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARK 132 (139)
Q Consensus 80 ~~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~~~ 132 (139)
+..+|++++|+|++++.+++.+..+...+.... +.|+++|+||+|+.+...
T Consensus 310 ~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~--~~piIvV~NK~Dl~~~~~ 360 (476)
T 3gee_A 310 MAEADLILYLLDLGTERLDDELTEIRELKAAHP--AAKFLTVANKLDRAANAD 360 (476)
T ss_dssp CSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCT--TSEEEEEEECTTSCTTTH
T ss_pred cccCCEEEEEEECCCCcchhhhHHHHHHHHhcC--CCCEEEEEECcCCCCccc
Confidence 788999999999999877754444443333332 689999999999977654
No 131
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.82 E-value=6.7e-21 Score=126.36 Aligned_cols=120 Identities=16% Similarity=0.228 Sum_probs=79.8
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEEC-CcEEEEEEEeCCCc----------ccccccc
Q 032487 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVN-DATVKFEIWDTAGQ----------ERYHSLA 76 (139)
Q Consensus 8 ~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~d~~g~----------~~~~~~~ 76 (139)
...++|+++|.+|+|||||+++|++...........+.+......... .....+.+|||||. +.+....
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 106 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLL 106 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHH
Confidence 457899999999999999999999876321122222333333333333 33467899999994 3334444
Q ss_pred hhhhcC---CCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCCc
Q 032487 77 PMYYRG---AAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131 (139)
Q Consensus 77 ~~~~~~---~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~~ 131 (139)
..++.. +|++++|+|+.++.+. ....|+..+.. ...|+++|+||+|+.+..
T Consensus 107 ~~~~~~~~~~d~vi~v~d~~~~~~~-~~~~~~~~l~~---~~~p~i~v~nK~Dl~~~~ 160 (223)
T 4dhe_A 107 SSYLQTRPQLCGMILMMDARRPLTE-LDRRMIEWFAP---TGKPIHSLLTKCDKLTRQ 160 (223)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCH-HHHHHHHHHGG---GCCCEEEEEECGGGSCHH
T ss_pred HHHHhcCcCcCEEEEEEeCCCCCCH-HHHHHHHHHHh---cCCCEEEEEeccccCChh
Confidence 455544 7889999999875332 22344444443 468999999999997654
No 132
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.82 E-value=2.1e-20 Score=135.42 Aligned_cols=121 Identities=21% Similarity=0.212 Sum_probs=84.2
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHhCCCC-cccccceeeEEEEEEEEECCcEEEEEEEeCCCc----------ccccccc
Q 032487 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFI-EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQ----------ERYHSLA 76 (139)
Q Consensus 8 ~~~~ki~i~G~~~~GKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~----------~~~~~~~ 76 (139)
...+||+++|.+|+|||||+|+|++.... ....+..+.+.....+..++ ..+.+|||||+ +.+....
T Consensus 173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~e~~~~~~ 250 (436)
T 2hjg_A 173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQ--QEFVIVDTAGMRKKGKVYETTEKYSVLR 250 (436)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETT--EEEEETTHHHHTCBTTBCCCCSHHHHHH
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECC--eEEEEEECCCcCcCccccchHHHHHHHH
Confidence 45689999999999999999999987653 22223333333334455555 46899999998 3333332
Q ss_pred h-hhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCCcCCC
Q 032487 77 P-MYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVT 134 (139)
Q Consensus 77 ~-~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~~~v~ 134 (139)
. .+++.+|++++|+|++++.++... .|+..+.. .+.|+++|+||+|+.+.++++
T Consensus 251 ~~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~---~~~~iiiv~NK~Dl~~~~~~~ 305 (436)
T 2hjg_A 251 ALKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE---AGKAVVIVVNKWDAVDKDEST 305 (436)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEEEECGGGSCCCTTH
T ss_pred HHHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH---cCCcEEEEEECccCCCcchHH
Confidence 2 367889999999999998776654 46665553 468999999999998765543
No 133
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.80 E-value=1.2e-18 Score=118.21 Aligned_cols=121 Identities=17% Similarity=0.179 Sum_probs=75.2
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHhCCCCc-ccccc-eeeEEEEEEEEECCcEEEEEEEeCCCcccccccc--------
Q 032487 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIE-FQEST-IGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLA-------- 76 (139)
Q Consensus 7 ~~~~~ki~i~G~~~~GKssli~~l~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~-------- 76 (139)
....++|+|+|++|+|||||+++|++..... ...+. .........+..++ .++.+|||||...+....
T Consensus 19 ~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~iiDTpG~~~~~~~~~~~~~~i~ 96 (260)
T 2xtp_A 19 SRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGN--REIVIIDTPDMFSWKDHCEALYKEVQ 96 (260)
T ss_dssp --CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETT--EEEEEEECCGGGGSSCCCHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCC--CEEEEEECcCCCCCCCCHHHHHHHHH
Confidence 3457899999999999999999999876332 22222 22233334444454 679999999986654322
Q ss_pred ---hhhhcCCCEEEEEEECCCHHHH-HHHHHHHHHHHHhCCCCCeEEEEEe-CCCCcCC
Q 032487 77 ---PMYYRGAAAAIIVYDITNQASF-ERAKKWVQELQAQGNPNMVMALAGN-KADLLDA 130 (139)
Q Consensus 77 ---~~~~~~~~~~i~v~~~~~~~s~-~~~~~~~~~~~~~~~~~~p~ivv~~-k~D~~~~ 130 (139)
..+++.+|++++|+|+.+.... ..+..++..+... ....|.++++| |+|+...
T Consensus 97 ~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~-~~~~~~i~vv~nK~Dl~~~ 154 (260)
T 2xtp_A 97 RCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGE-DAMGHTIVLFTHKEDLNGG 154 (260)
T ss_dssp HHHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCG-GGGGGEEEEEECGGGGTTC
T ss_pred HHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCc-hhhccEEEEEEcccccCCc
Confidence 2256889999999999862221 1222333333211 11345555555 9999743
No 134
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.79 E-value=6.4e-20 Score=132.08 Aligned_cols=120 Identities=17% Similarity=0.186 Sum_probs=82.1
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHhCCCC-cccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccc-------hh
Q 032487 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFI-EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLA-------PM 78 (139)
Q Consensus 7 ~~~~~ki~i~G~~~~GKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~-------~~ 78 (139)
....++|+++|..++|||||+++|.+..+. ....+..+.+.....+...+. ..+.+|||||++.+.... ..
T Consensus 31 ~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~-~~l~liDTpG~~d~~~l~~~~~~~~~~ 109 (423)
T 3qq5_A 31 AGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPI-GPVTLVDTPGLDDVGELGRLRVEKARR 109 (423)
T ss_dssp -CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTT-EEEEEEECSSTTCCCTTCCCCHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCC-CeEEEEECcCCCcccchhHHHHHHHHH
Confidence 456789999999999999999999987653 222333333344455555543 379999999998776542 34
Q ss_pred hhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCCcCC
Q 032487 79 YYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKV 133 (139)
Q Consensus 79 ~~~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~~~v 133 (139)
++..+|++++|+|+.... ....|+..+... +.|+++|+||+|+.+.+..
T Consensus 110 ~l~~aD~vllVvD~~~~~---~~~~~l~~l~~~---~~piIvV~NK~Dl~~~~~~ 158 (423)
T 3qq5_A 110 VFYRADCGILVTDSAPTP---YEDDVVNLFKEM---EIPFVVVVNKIDVLGEKAE 158 (423)
T ss_dssp HHTSCSEEEEECSSSCCH---HHHHHHHHHHHT---TCCEEEECCCCTTTTCCCT
T ss_pred HHhcCCEEEEEEeCCChH---HHHHHHHHHHhc---CCCEEEEEeCcCCCCccHH
Confidence 688899999999983332 345677766655 6899999999999876543
No 135
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.78 E-value=2.2e-19 Score=130.78 Aligned_cols=124 Identities=22% Similarity=0.243 Sum_probs=84.6
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHhCCCC-cccccceeeEEEEEEEEECCcEEEEEEEeCCC----------ccccccc
Q 032487 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFI-EFQESTIGAAFFSQTLAVNDATVKFEIWDTAG----------QERYHSL 75 (139)
Q Consensus 7 ~~~~~ki~i~G~~~~GKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g----------~~~~~~~ 75 (139)
....+||+++|.+++|||||+++|.+.... ....+..+.+.....+..++ ..+.+||||| ++.+...
T Consensus 192 ~~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~e~~~~~ 269 (456)
T 4dcu_A 192 NEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQ--QEFVIVDTAGMRKKGKVYETTEKYSVL 269 (456)
T ss_dssp CTTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETT--EEEEETTGGGTTTBTTBCCCCSHHHHH
T ss_pred ccccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECC--ceEEEEECCCCCcCcccchHHHHHHHH
Confidence 356789999999999999999999976532 22222222222233445555 4789999999 5555554
Q ss_pred ch-hhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCCcCCCcc
Q 032487 76 AP-MYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAE 136 (139)
Q Consensus 76 ~~-~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~~~v~~~ 136 (139)
.. .+++.+|++++|+|+.++.+ +....|+..+.. .+.|+++|+||+|+.+.++++.+
T Consensus 270 ~~~~~~~~ad~~llviD~~~~~~-~~~~~~~~~~~~---~~~~~ilv~NK~Dl~~~~~~~~~ 327 (456)
T 4dcu_A 270 RALKAIDRSEVVAVVLDGEEGII-EQDKRIAGYAHE---AGKAVVIVVNKWDAVDKDESTMK 327 (456)
T ss_dssp HHHHHHHHCSEEEEEEETTTCCC-HHHHHHHHHHHH---TTCEEEEEEECGGGSCCCSSHHH
T ss_pred HHHHHHhhCCEEEEEEeCCCCcC-HHHHHHHHHHHH---cCCCEEEEEEChhcCCCchHHHH
Confidence 44 36788999999999987543 233455555554 46899999999999876655433
No 136
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.78 E-value=1.6e-19 Score=130.87 Aligned_cols=116 Identities=18% Similarity=0.167 Sum_probs=72.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcc--------cccccchhhhc
Q 032487 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQE--------RYHSLAPMYYR 81 (139)
Q Consensus 10 ~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~--------~~~~~~~~~~~ 81 (139)
..+|+++|.+|+|||||+|+|.+..... ...+.|.++.............+.+|||+|++ .+...+..++.
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~~~~~~-v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 81 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAGERISI-VEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMD 81 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEEEECC------------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcee-ecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence 3689999999999999999999876542 23444554444443444444679999999985 45555667788
Q ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCC
Q 032487 82 GAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDA 130 (139)
Q Consensus 82 ~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~ 130 (139)
.+|++++|+|+.++.+... .++..+.. ..+.|+++|+||+|+.+.
T Consensus 82 ~ad~il~vvD~~~~~~~~d--~~~~~~l~--~~~~pvilv~NK~D~~~~ 126 (436)
T 2hjg_A 82 EADVIIFMVNGREGVTAAD--EEVAKILY--RTKKPVVLAVNKLDNTEM 126 (436)
T ss_dssp HCSEEEEEEETTTCSCHHH--HHHHHHHT--TCCSCEEEEEECCCC---
T ss_pred hCCEEEEEEeCCCCCCHHH--HHHHHHHH--HcCCCEEEEEECccCccc
Confidence 9999999999988655432 23333222 357899999999998754
No 137
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.78 E-value=1.5e-18 Score=125.90 Aligned_cols=111 Identities=22% Similarity=0.238 Sum_probs=72.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCC-cccccceeeEEEEEEEEECCcEEEEEEEeCCCcccc---------cccchhhh
Q 032487 11 AKLVLLGDVGAGKSSLVLRFVKGQFI-EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERY---------HSLAPMYY 80 (139)
Q Consensus 11 ~ki~i~G~~~~GKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~---------~~~~~~~~ 80 (139)
.+|+++|.+|+|||||+|+|.+.... ....+..+.++....+..++ ..+.+|||||.+.. ...+..++
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 79 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYG--KTFKLVDTCGVFDNPQDIISQKMKEVTLNMI 79 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETT--EEEEEEECTTTTSSGGGCCCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECC--eEEEEEECCCccccccchHHHHHHHHHHHHH
Confidence 47999999999999999999987643 22223333333444555565 56899999997642 23345578
Q ss_pred cCCCEEEEEEECCCHHHHHH--HHHHHHHHHHhCCCCCeEEEEEeCCCCcC
Q 032487 81 RGAAAAIIVYDITNQASFER--AKKWVQELQAQGNPNMVMALAGNKADLLD 129 (139)
Q Consensus 81 ~~~~~~i~v~~~~~~~s~~~--~~~~~~~~~~~~~~~~p~ivv~~k~D~~~ 129 (139)
+.+|++++|+|+.++.+... +..|+. . .+.|+++|+||+|+.+
T Consensus 80 ~~ad~il~V~D~~~~~~~~d~~i~~~l~---~---~~~p~ilv~NK~D~~~ 124 (439)
T 1mky_A 80 READLVLFVVDGKRGITKEDESLADFLR---K---STVDTILVANKAENLR 124 (439)
T ss_dssp TTCSEEEEEEETTTCCCHHHHHHHHHHH---H---HTCCEEEEEESCCSHH
T ss_pred HhCCEEEEEEECCCCCCHHHHHHHHHHH---H---cCCCEEEEEeCCCCcc
Confidence 99999999999987544322 333332 2 2578999999999854
No 138
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.78 E-value=4.4e-18 Score=122.22 Aligned_cols=124 Identities=14% Similarity=0.071 Sum_probs=89.8
Q ss_pred CCCcceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEE---------EE-------EE---CCcEEEEEEEe
Q 032487 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQ---------TL-------AV---NDATVKFEIWD 65 (139)
Q Consensus 5 ~~~~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~---------~~-------~~---~~~~~~~~i~d 65 (139)
...+..++|+++|++++|||||+++|.+........ ....+.... .. .. ......+.+||
T Consensus 3 ~~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiD 81 (403)
T 3sjy_A 3 PKVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLG-YAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFID 81 (403)
T ss_dssp CCCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSE-EEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEE
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCcccccccC-ccccceeeccccccccceecccccccccccccccccceEEEEE
Confidence 345678999999999999999999999754322110 000000000 00 00 11226899999
Q ss_pred CCCcccccccchhhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCCc
Q 032487 66 TAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131 (139)
Q Consensus 66 ~~g~~~~~~~~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~~ 131 (139)
|||++.+.......+..+|++++|+|++++.++...++|+..+.... ..|+++++||+|+.+..
T Consensus 82 tPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~--~~~iivviNK~Dl~~~~ 145 (403)
T 3sjy_A 82 APGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIG--VKNLIIVQNKVDVVSKE 145 (403)
T ss_dssp CCCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHT--CCCEEEEEECGGGSCHH
T ss_pred CCCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcC--CCCEEEEEECccccchH
Confidence 99999998888888999999999999999877777888887777653 25899999999997653
No 139
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.78 E-value=3.1e-19 Score=130.80 Aligned_cols=121 Identities=25% Similarity=0.208 Sum_probs=80.7
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHhCCC--Ccc---------------------------cccceeeEEEEEEEEECCcE
Q 032487 8 NINAKLVLLGDVGAGKSSLVLRFVKGQF--IEF---------------------------QESTIGAAFFSQTLAVNDAT 58 (139)
Q Consensus 8 ~~~~ki~i~G~~~~GKssli~~l~~~~~--~~~---------------------------~~~~~~~~~~~~~~~~~~~~ 58 (139)
+..+||+++|.+++|||||+++|++... ... .....|.+.......+....
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 110 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 110 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCC
Confidence 4578999999999999999999986511 100 00011222222233333445
Q ss_pred EEEEEEeCCCcccccccchhhhcCCCEEEEEEECCCHHHHH------HHHHHHHHHHHhCCCCCeEEEEEeCCCCcCC
Q 032487 59 VKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFE------RAKKWVQELQAQGNPNMVMALAGNKADLLDA 130 (139)
Q Consensus 59 ~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~~~~~~~s~~------~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~ 130 (139)
..+.+|||||+++|.......+..+|++++|+|++++.++. ..++.+..+... ...|+++|+||+|+.+.
T Consensus 111 ~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~--~~~~iIvviNK~Dl~~~ 186 (483)
T 3p26_A 111 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL--GIHNLIIAMNKMDNVDW 186 (483)
T ss_dssp CEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT--TCCCEEEEEECGGGGTT
T ss_pred ceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc--CCCcEEEEEECcCcccc
Confidence 78999999999999888888899999999999999875432 233333333333 23469999999999864
No 140
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.78 E-value=3.4e-19 Score=122.02 Aligned_cols=120 Identities=15% Similarity=0.194 Sum_probs=73.6
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHhCCCCccc--------ccceeeEEEEEEEEECCcEEEEEEEeCCCcccc------
Q 032487 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQ--------ESTIGAAFFSQTLAVNDATVKFEIWDTAGQERY------ 72 (139)
Q Consensus 7 ~~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~------ 72 (139)
+...++|+++|.+|+|||||+|+|++....... .++.+.+.....+..++..+.+.+|||||....
T Consensus 5 ~g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~ 84 (274)
T 3t5d_A 5 SGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNC 84 (274)
T ss_dssp --CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTT
T ss_pred CccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhh
Confidence 456799999999999999999998876654332 445555555555555666679999999997322
Q ss_pred -cccc-------hhhh-------------cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCC
Q 032487 73 -HSLA-------PMYY-------------RGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDA 130 (139)
Q Consensus 73 -~~~~-------~~~~-------------~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~ 130 (139)
..+. ..++ ..+|+++++++.........-..+++.+.. ..|+++|+||+|+...
T Consensus 85 ~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~----~~pvi~V~nK~D~~~~ 159 (274)
T 3t5d_A 85 WQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE----KVNIIPLIAKADTLTP 159 (274)
T ss_dssp THHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT----TSCEEEEESSGGGSCH
T ss_pred HHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc----cCCEEEEEeccCCCCH
Confidence 1111 1112 236788888876542211222334444432 7899999999998653
No 141
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.78 E-value=5.8e-18 Score=119.86 Aligned_cols=121 Identities=15% Similarity=0.132 Sum_probs=86.2
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccc---------cchh
Q 032487 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHS---------LAPM 78 (139)
Q Consensus 8 ~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~---------~~~~ 78 (139)
...++++++|++|+|||||+++|.+........+..........+...+ ..+.+|||||...... ....
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 242 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGY--FRYQIIDTPGLLDRPISERNEIEKQAILA 242 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETT--EEEEEEECTTTSSSCSTTSCHHHHHHHHG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecC--ceEEEEeCCCccccchhhhhHHHHHHHHH
Confidence 4678999999999999999999998764322222222223333333443 6799999999754211 1112
Q ss_pred hhcCCCEEEEEEECCCHH--HHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCCc
Q 032487 79 YYRGAAAAIIVYDITNQA--SFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131 (139)
Q Consensus 79 ~~~~~~~~i~v~~~~~~~--s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~~ 131 (139)
....+|++++|+|++++. +++....|+..+..... +.|+++|+||+|+.+..
T Consensus 243 ~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl~~~~ 296 (357)
T 2e87_A 243 LRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDVADEE 296 (357)
T ss_dssp GGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTTCCHH
T ss_pred HHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECcccCChH
Confidence 345689999999998876 67777888888877533 78999999999997654
No 142
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.77 E-value=3.1e-18 Score=121.39 Aligned_cols=118 Identities=19% Similarity=0.129 Sum_probs=80.8
Q ss_pred eeE-EEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcc---------cccccchhh
Q 032487 10 NAK-LVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQE---------RYHSLAPMY 79 (139)
Q Consensus 10 ~~k-i~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~---------~~~~~~~~~ 79 (139)
.++ ++++|++|+|||||+|.|.+........+....+.....+.+++ ..+.+|||+|.- .+.... ..
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g--~~v~l~DT~G~i~~lp~~lve~f~~tl-~~ 254 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN--RKIMLVDTVGFIRGIPPQIVDAFFVTL-SE 254 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETT--EEEEEEECCCBCSSCCGGGHHHHHHHH-HG
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECC--EEEEEEeCCCchhcCCHHHHHHHHHHH-HH
Confidence 355 99999999999999999998765332222222233455666666 568999999962 122222 24
Q ss_pred hcCCCEEEEEEECCCHH--HHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCC
Q 032487 80 YRGAAAAIIVYDITNQA--SFERAKKWVQELQAQGNPNMVMALAGNKADLLDA 130 (139)
Q Consensus 80 ~~~~~~~i~v~~~~~~~--s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~ 130 (139)
+..+|++++|+|++++. ..+.+..|...+........|+++|+||+|+.+.
T Consensus 255 ~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~ 307 (364)
T 2qtf_A 255 AKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKING 307 (364)
T ss_dssp GGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCS
T ss_pred HHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCc
Confidence 67899999999998876 5666667776666654567899999999998754
No 143
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.77 E-value=2.1e-18 Score=125.02 Aligned_cols=121 Identities=18% Similarity=0.176 Sum_probs=82.4
Q ss_pred CCcceeEEEEEcCCCCcHHHHHHHHHhCCCC--cc---------------------------cccceeeEEEEEEEEECC
Q 032487 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFI--EF---------------------------QESTIGAAFFSQTLAVND 56 (139)
Q Consensus 6 ~~~~~~ki~i~G~~~~GKssli~~l~~~~~~--~~---------------------------~~~~~~~~~~~~~~~~~~ 56 (139)
..+..++|+++|++++|||||+++|++..-. .. .....|.+.......+..
T Consensus 13 ~~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~ 92 (439)
T 3j2k_7 13 PKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFET 92 (439)
T ss_pred CCCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEec
Confidence 3456799999999999999999999653210 00 001122333333333433
Q ss_pred cEEEEEEEeCCCcccccccchhhhcCCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhCCCCCe-EEEEEeCCCCcC
Q 032487 57 ATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQAS---FE---RAKKWVQELQAQGNPNMV-MALAGNKADLLD 129 (139)
Q Consensus 57 ~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~~~~~~~s---~~---~~~~~~~~~~~~~~~~~p-~ivv~~k~D~~~ 129 (139)
...++.+|||||+++|.......+..+|++++|+|+++... |+ ..++.+..+.. .+.| +++++||+|+.+
T Consensus 93 ~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~---~~v~~iIvviNK~Dl~~ 169 (439)
T 3j2k_7 93 EKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT---AGVKHLIVLINKMDDPT 169 (439)
T ss_pred CCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH---cCCCeEEEEeecCCCcc
Confidence 44689999999999998888888899999999999988532 21 23333333333 2455 999999999854
No 144
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.77 E-value=3.7e-19 Score=125.15 Aligned_cols=119 Identities=18% Similarity=0.137 Sum_probs=84.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCccc----ccccchhhh---cCC
Q 032487 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER----YHSLAPMYY---RGA 83 (139)
Q Consensus 11 ~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~----~~~~~~~~~---~~~ 83 (139)
.+|+++|.+++|||||+++|.+.+......+..........+.+++ ...+.+||+||... +..+...++ ..+
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~-~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~ 237 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDD-GRSFVMADLPGLIEGAHQGVGLGHQFLRHIERT 237 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSS-SCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHC
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCC-CceEEEecCCCCcccccccchhHHHHHHHHHhc
Confidence 3688999999999999999997654322222111112223344443 24789999999643 333334443 459
Q ss_pred CEEEEEEECCC---HHHHHHHHHHHHHHHHhCC--CCCeEEEEEeCCCCcCC
Q 032487 84 AAAIIVYDITN---QASFERAKKWVQELQAQGN--PNMVMALAGNKADLLDA 130 (139)
Q Consensus 84 ~~~i~v~~~~~---~~s~~~~~~~~~~~~~~~~--~~~p~ivv~~k~D~~~~ 130 (139)
+++++|+|+++ +.+++.+..|+..+..... ...|+++|+||+|+.+.
T Consensus 238 d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~ 289 (342)
T 1lnz_A 238 RVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEA 289 (342)
T ss_dssp CEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTH
T ss_pred cEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCC
Confidence 99999999998 7889999999999988642 57899999999999754
No 145
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.77 E-value=5.2e-19 Score=128.73 Aligned_cols=117 Identities=17% Similarity=0.215 Sum_probs=74.6
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHhCCCC-cccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccc--------hhh
Q 032487 9 INAKLVLLGDVGAGKSSLVLRFVKGQFI-EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLA--------PMY 79 (139)
Q Consensus 9 ~~~ki~i~G~~~~GKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~--------~~~ 79 (139)
..++|+++|++|+|||||+|+|.+.+.. ....+..+.+.....+..++ ..+.+|||||...+.... ...
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~v~liDT~G~~~~~~~ve~~gi~~~~~~ 300 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGG--IPVQVLDTAGIRETSDQVEKIGVERSRQA 300 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETT--EEEEECC--------------------CC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECC--EEEEEEECCccccchhHHHHHHHHHHhhh
Confidence 4679999999999999999999986532 22223333233333445565 678999999986544322 235
Q ss_pred hcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCCcCC
Q 032487 80 YRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKV 133 (139)
Q Consensus 80 ~~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~~~v 133 (139)
+..+|++++|+|.+++.+... ..|+..+. ..|+++|+||+|+.+...+
T Consensus 301 ~~~aD~vl~VvD~s~~~~~~~-~~i~~~l~-----~~piivV~NK~Dl~~~~~~ 348 (462)
T 3geh_A 301 ANTADLVLLTIDAATGWTTGD-QEIYEQVK-----HRPLILVMNKIDLVEKQLI 348 (462)
T ss_dssp CCSCSEEEEEEETTTCSCHHH-HHHHHHHT-----TSCEEEEEECTTSSCGGGS
T ss_pred hhcCCEEEEEeccCCCCCHHH-HHHHHhcc-----CCcEEEEEECCCCCcchhh
Confidence 778999999999998766543 44444442 3699999999999876544
No 146
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.77 E-value=1.3e-18 Score=121.87 Aligned_cols=73 Identities=18% Similarity=0.284 Sum_probs=64.3
Q ss_pred EEEEEEEeCCCcccccccchhhhcCCCEEEEEEECC----------CHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCCC
Q 032487 58 TVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDIT----------NQASFERAKKWVQELQAQG-NPNMVMALAGNKAD 126 (139)
Q Consensus 58 ~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~~~~----------~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~~k~D 126 (139)
.+.+++||++|++.++..|..++++++++|+|||++ +..++.....|+..+.... ..+.|+++++||+|
T Consensus 160 ~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK~D 239 (340)
T 4fid_A 160 DIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNKMD 239 (340)
T ss_dssp SCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEECHH
T ss_pred eeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEECch
Confidence 478999999999999999999999999999999998 6778888888888877653 36899999999999
Q ss_pred CcCC
Q 032487 127 LLDA 130 (139)
Q Consensus 127 ~~~~ 130 (139)
+.++
T Consensus 240 L~~e 243 (340)
T 4fid_A 240 LFEE 243 (340)
T ss_dssp HHHH
T ss_pred hhhh
Confidence 8754
No 147
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.77 E-value=1.8e-20 Score=138.17 Aligned_cols=118 Identities=18% Similarity=0.239 Sum_probs=86.0
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEEE
Q 032487 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (139)
Q Consensus 8 ~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 87 (139)
++..+|+++|++++|||||+++|.+..+.....++.+.++....+..++ ...+.+|||||++.|...+...+..+|+++
T Consensus 2 ~r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~-g~~i~~iDTPGhe~f~~~~~~~~~~aD~vI 80 (537)
T 3izy_P 2 PRSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPS-GEKITFLDTPGHAAFSAMRARGTQVTDIVI 80 (537)
T ss_dssp CCCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSC-SSCCBCEECSSSCCTTTSBBSSSBSBSSCE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCC-CCEEEEEECCChHHHHHHHHHHHccCCEEE
Confidence 3568899999999999999999997765544444443333233333321 246899999999999999999999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCC
Q 032487 88 IVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDA 130 (139)
Q Consensus 88 ~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~ 130 (139)
+|+|++++....... ++..+. ..+.|+++++||+|+.+.
T Consensus 81 LVVDa~dg~~~qt~e-~l~~~~---~~~vPiIVViNKiDl~~~ 119 (537)
T 3izy_P 81 LVVAADDGVMKQTVE-SIQHAK---DAHVPIVLAINKCDKAEA 119 (537)
T ss_dssp EECBSSSCCCHHHHH-HHHHHH---TTTCCEEECCBSGGGTTT
T ss_pred EEEECCCCccHHHHH-HHHHHH---HcCCcEEEEEeccccccc
Confidence 999999865433322 223233 346899999999999754
No 148
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.76 E-value=3.1e-19 Score=129.98 Aligned_cols=119 Identities=18% Similarity=0.148 Sum_probs=76.6
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCC--------cccccccchh
Q 032487 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAG--------QERYHSLAPM 78 (139)
Q Consensus 7 ~~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g--------~~~~~~~~~~ 78 (139)
.+...+|+++|.+|||||||+|+|.+..... ...+.|.++.............+.+||||| ++.+......
T Consensus 20 ~m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~-v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~ 98 (456)
T 4dcu_A 20 HMGKPVVAIVGRPNVGKSTIFNRIAGERISI-VEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEI 98 (456)
T ss_dssp ---CCEEEEECSSSSSHHHHHHHHEEEEEC------------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHH
T ss_pred hcCCCEEEEECCCCCcHHHHHHHHhCCCCcc-cCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHh
Confidence 3456799999999999999999999876542 234455555555555555556899999999 5666667777
Q ss_pred hhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCC
Q 032487 79 YYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDA 130 (139)
Q Consensus 79 ~~~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~ 130 (139)
++..+|++++|+|..++.+. ...++..+.. ..+.|+++|+||+|+.+.
T Consensus 99 ~~~~ad~il~VvD~~~~~~~--~d~~l~~~l~--~~~~pvilV~NK~D~~~~ 146 (456)
T 4dcu_A 99 AMDEADVIIFMVNGREGVTA--ADEEVAKILY--RTKKPVVLAVNKLDNTEM 146 (456)
T ss_dssp HHHHCSEEEEEEESSSCSCH--HHHHHHHHHT--TCCSCEEEEEECC-----
T ss_pred hHhhCCEEEEEEeCCCCCCh--HHHHHHHHHH--HcCCCEEEEEECccchhh
Confidence 88999999999998764332 2233333332 357899999999998654
No 149
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.76 E-value=1.2e-18 Score=121.59 Aligned_cols=74 Identities=20% Similarity=0.280 Sum_probs=62.4
Q ss_pred EEEEEEEeCCCcccccccchhhhcCCCEEEEEEECC----------CHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCCC
Q 032487 58 TVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDIT----------NQASFERAKKWVQELQAQG-NPNMVMALAGNKAD 126 (139)
Q Consensus 58 ~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~~~~----------~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~~k~D 126 (139)
.+.+++||++|++.++..|..++++++++++|||++ +..++.....|+..+.... ..+.|+++++||+|
T Consensus 166 ~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~iiL~~NK~D 245 (327)
T 3ohm_A 166 SVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKD 245 (327)
T ss_dssp TEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCEEEEEEECHH
T ss_pred ceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCceEEEEEECch
Confidence 388999999999999999999999999999999665 5567777777777776543 36799999999999
Q ss_pred CcCCc
Q 032487 127 LLDAR 131 (139)
Q Consensus 127 ~~~~~ 131 (139)
+.+++
T Consensus 246 L~~~k 250 (327)
T 3ohm_A 246 LLEEK 250 (327)
T ss_dssp HHHHH
T ss_pred hhhhh
Confidence 97654
No 150
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.76 E-value=8e-19 Score=128.29 Aligned_cols=113 Identities=20% Similarity=0.275 Sum_probs=81.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCCCC-cccccceeeEEEEEEEEECCcEEEEEEEeCCCcc-cccc--------cchhh
Q 032487 10 NAKLVLLGDVGAGKSSLVLRFVKGQFI-EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQE-RYHS--------LAPMY 79 (139)
Q Consensus 10 ~~ki~i~G~~~~GKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~-~~~~--------~~~~~ 79 (139)
.++|+++|.+|+|||||+|+|.+.+.. ....+..+.+.....+.+++ ..+.+|||||.. .+.. ....+
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g--~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~ 320 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQE 320 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCC--eEEEEEECCCccccchhhHHHHHHHHHHHH
Confidence 489999999999999999999987532 22333333334445556665 678999999987 5432 12346
Q ss_pred hcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCC
Q 032487 80 YRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDA 130 (139)
Q Consensus 80 ~~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~ 130 (139)
+..+|++++|+|++++.+++..+ +++.+ ...|+++|+||+|+.+.
T Consensus 321 ~~~aD~vl~VvD~s~~~s~~~~~-il~~l-----~~~piivV~NK~DL~~~ 365 (482)
T 1xzp_A 321 IEKADIVLFVLDASSPLDEEDRK-ILERI-----KNKRYLVVINKVDVVEK 365 (482)
T ss_dssp HHHCSEEEEEEETTSCCCHHHHH-HHHHH-----TTSSEEEEEEECSSCCC
T ss_pred hhcccEEEEEecCCCCCCHHHHH-HHHHh-----cCCCEEEEEECcccccc
Confidence 78899999999999887765532 32322 36799999999999754
No 151
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.76 E-value=2.3e-17 Score=118.68 Aligned_cols=124 Identities=17% Similarity=0.155 Sum_probs=80.3
Q ss_pred CCcceeEEEEEcCCCCcHHHHHHHHHhCC---CCccccc--ceeeEEEEEEEEE-------------C--C----cEEEE
Q 032487 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQ---FIEFQES--TIGAAFFSQTLAV-------------N--D----ATVKF 61 (139)
Q Consensus 6 ~~~~~~ki~i~G~~~~GKssli~~l~~~~---~~~~~~~--~~~~~~~~~~~~~-------------~--~----~~~~~ 61 (139)
+++..++|+++|+.++|||||+++|.+.. +..+..+ |....+....+.. + + ....+
T Consensus 4 ~r~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i 83 (408)
T 1s0u_A 4 GSQAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRV 83 (408)
T ss_dssp -CCCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEE
T ss_pred ccCCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEE
Confidence 34567999999999999999999998543 2222222 3433333332211 1 1 13789
Q ss_pred EEEeCCCcccccccchhhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCCc
Q 032487 62 EIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131 (139)
Q Consensus 62 ~i~d~~g~~~~~~~~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~~ 131 (139)
.+||+||++.|.......+..+|++++|+|++++.......+++..+... ...|+++++||+|+.+..
T Consensus 84 ~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l--~~~~iivv~NK~Dl~~~~ 151 (408)
T 1s0u_A 84 SFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEIL--GIDKIIIVQNKIDLVDEK 151 (408)
T ss_dssp EEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHT--TCCCEEEEEECTTSSCTT
T ss_pred EEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHc--CCCeEEEEEEccCCCCHH
Confidence 99999999988776666677899999999999643112222333333333 234799999999997754
No 152
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.76 E-value=6.1e-19 Score=130.17 Aligned_cols=117 Identities=13% Similarity=0.095 Sum_probs=82.7
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHhCCC------------------Cc----ccccceeeEEEEEEEEECCcEEEEEEEe
Q 032487 8 NINAKLVLLGDVGAGKSSLVLRFVKGQF------------------IE----FQESTIGAAFFSQTLAVNDATVKFEIWD 65 (139)
Q Consensus 8 ~~~~ki~i~G~~~~GKssli~~l~~~~~------------------~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~d 65 (139)
.+..+|+|+|++++|||||+++|+.... .. +..+..........+..+ ...+.+||
T Consensus 11 ~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~--~~~i~liD 88 (528)
T 3tr5_A 11 AMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYK--DYLINLLD 88 (528)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEET--TEEEEEEC
T ss_pred hcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeC--CEEEEEEE
Confidence 4578999999999999999999962110 00 000111111122223334 47899999
Q ss_pred CCCcccccccchhhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCC
Q 032487 66 TAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDA 130 (139)
Q Consensus 66 ~~g~~~~~~~~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~ 130 (139)
|||+.++......+++.+|++++|+|+.++.+......| ..+. ..++|+++|+||+|+...
T Consensus 89 TPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~-~~~~---~~~iPiivviNK~Dl~~~ 149 (528)
T 3tr5_A 89 TPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLM-EVCR---LRHTPIMTFINKMDRDTR 149 (528)
T ss_dssp CCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHH-HHHH---TTTCCEEEEEECTTSCCS
T ss_pred CCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHH---HcCCCEEEEEeCCCCccc
Confidence 999999988888899999999999999987666555444 3333 346899999999999654
No 153
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.75 E-value=3.5e-18 Score=127.58 Aligned_cols=118 Identities=17% Similarity=0.210 Sum_probs=80.3
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHhCC--CCc-----cc------ccceeeEEEEEEEE--E---CCcEEEEEEEeCCCcc
Q 032487 9 INAKLVLLGDVGAGKSSLVLRFVKGQ--FIE-----FQ------ESTIGAAFFSQTLA--V---NDATVKFEIWDTAGQE 70 (139)
Q Consensus 9 ~~~ki~i~G~~~~GKssli~~l~~~~--~~~-----~~------~~~~~~~~~~~~~~--~---~~~~~~~~i~d~~g~~ 70 (139)
...+|+++|+.++|||||+++|+... ... .. ....|.+....... + ++..+.+.+|||||+.
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 46799999999999999999998632 110 00 11223333322222 2 4456899999999999
Q ss_pred cccccchhhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCC
Q 032487 71 RYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDA 130 (139)
Q Consensus 71 ~~~~~~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~ 130 (139)
+|.......+..+|++++|+|+.++.+......|...+. .++|+++|+||+|+.+.
T Consensus 83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~----~~ipiIvViNKiDl~~a 138 (599)
T 3cb4_D 83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME----MDLEVVPVLNKIDLPAA 138 (599)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH----TTCEEEEEEECTTSTTC
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH----CCCCEEEeeeccCcccc
Confidence 998888888999999999999999877776677755443 36799999999999764
No 154
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.75 E-value=2.1e-18 Score=121.70 Aligned_cols=73 Identities=18% Similarity=0.296 Sum_probs=63.7
Q ss_pred EEEEEEEeCCCcccccccchhhhcCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCCC
Q 032487 58 TVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITN----------QASFERAKKWVQELQAQG-NPNMVMALAGNKAD 126 (139)
Q Consensus 58 ~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~~~~~----------~~s~~~~~~~~~~~~~~~-~~~~p~ivv~~k~D 126 (139)
.+.+++||++|++.++..|..++++++++|+|||+++ ..++.....|+..+.... ..+.|+++++||+|
T Consensus 192 ~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~piiLv~NK~D 271 (353)
T 1cip_A 192 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKD 271 (353)
T ss_dssp TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHH
T ss_pred CeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcEEEEEECcC
Confidence 4889999999999999999999999999999999998 456888888888887642 36799999999999
Q ss_pred CcCC
Q 032487 127 LLDA 130 (139)
Q Consensus 127 ~~~~ 130 (139)
+.++
T Consensus 272 L~~~ 275 (353)
T 1cip_A 272 LFEE 275 (353)
T ss_dssp HHHH
T ss_pred chhh
Confidence 8643
No 155
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.75 E-value=2.7e-18 Score=123.39 Aligned_cols=119 Identities=15% Similarity=0.218 Sum_probs=84.8
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHhC--------CCCcc-------cccceeeEEEEEEEEECCcEEEEEEEeCCCccc
Q 032487 7 KNINAKLVLLGDVGAGKSSLVLRFVKG--------QFIEF-------QESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71 (139)
Q Consensus 7 ~~~~~ki~i~G~~~~GKssli~~l~~~--------~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~ 71 (139)
++..++|+++|++++|||||+++|.+. .+... .....|.+.......+......+.+|||||+++
T Consensus 8 ~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~ 87 (405)
T 2c78_A 8 TKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHAD 87 (405)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGG
T ss_pred CCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHH
Confidence 456799999999999999999999873 11110 001222333233334444447899999999999
Q ss_pred ccccchhhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEeCCCCcC
Q 032487 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMV-MALAGNKADLLD 129 (139)
Q Consensus 72 ~~~~~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~~k~D~~~ 129 (139)
|.......+..+|++++|+|++++.. ...++|+..+... +.| +++++||+|+.+
T Consensus 88 f~~~~~~~~~~aD~~ilVvda~~g~~-~qt~~~l~~~~~~---~ip~iivviNK~Dl~~ 142 (405)
T 2c78_A 88 YIKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQV---GVPYIVVFMNKVDMVD 142 (405)
T ss_dssp GHHHHHHHHTTCSSEEEEEETTTCCC-HHHHHHHHHHHHT---TCCCEEEEEECGGGCC
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCEEEEEEECccccC
Confidence 88777778899999999999988643 3445666655543 567 899999999974
No 156
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.75 E-value=3.5e-18 Score=123.76 Aligned_cols=119 Identities=23% Similarity=0.235 Sum_probs=80.5
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHhC--CCCccc---------------------------ccceeeEEEEEEEEECCcE
Q 032487 8 NINAKLVLLGDVGAGKSSLVLRFVKG--QFIEFQ---------------------------ESTIGAAFFSQTLAVNDAT 58 (139)
Q Consensus 8 ~~~~ki~i~G~~~~GKssli~~l~~~--~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~ 58 (139)
+..++|+++|+.++|||||+++|++. .+.... ....+.+.......+....
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~ 83 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK 83 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCC
Confidence 46789999999999999999999864 221100 0011222222223344445
Q ss_pred EEEEEEeCCCcccccccchhhhcCCCEEEEEEECCCHHHHHHHHH-------HHHHHHHhCCCCCeEEEEEeCCCCcC
Q 032487 59 VKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKK-------WVQELQAQGNPNMVMALAGNKADLLD 129 (139)
Q Consensus 59 ~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~~~~~~~s~~~~~~-------~~~~~~~~~~~~~p~ivv~~k~D~~~ 129 (139)
.++.+|||||+++|.......+..+|++++|+|+++ .+|+.... ++..+... ...|+++++||+|+.+
T Consensus 84 ~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~--~~~~iivviNK~Dl~~ 158 (435)
T 1jny_A 84 YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTM--GLDQLIVAVNKMDLTE 158 (435)
T ss_dssp CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHT--TCTTCEEEEECGGGSS
T ss_pred eEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHc--CCCeEEEEEEcccCCC
Confidence 789999999999998888888999999999999998 67775433 33222222 2246899999999976
No 157
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.75 E-value=1.7e-19 Score=132.06 Aligned_cols=117 Identities=16% Similarity=0.180 Sum_probs=81.5
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEEE
Q 032487 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (139)
Q Consensus 8 ~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 87 (139)
++..+|+++|+.++|||||+++|.+..+.....+.+..+.....+..++ ..+.+|||||++.|...+...+..+|+++
T Consensus 2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~--~~i~~iDTPGhe~f~~~~~~~~~~aD~aI 79 (501)
T 1zo1_I 2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETEN--GMITFLDTPGHAAFTSMRARGAQATDIVV 79 (501)
T ss_dssp CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTS--SCCCEECCCTTTCCTTSBCSSSBSCSSEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECC--EEEEEEECCCcHHHHHHHHHHHhhCCEEE
Confidence 4678999999999999999999997654433222222221112222233 46899999999999998888899999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCC
Q 032487 88 IVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDA 130 (139)
Q Consensus 88 ~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~ 130 (139)
+|+|++++.... ..+++..+.. .+.|+++++||+|+.+.
T Consensus 80 LVVda~~g~~~q-T~e~l~~~~~---~~vPiIVviNKiDl~~~ 118 (501)
T 1zo1_I 80 LVVAADDGVMPQ-TIEAIQHAKA---AQVPVVVAVNKIDKPEA 118 (501)
T ss_dssp EEEETTTBSCTT-THHHHHHHHH---TTCCEEEEEECSSSSTT
T ss_pred EEeecccCccHH-HHHHHHHHHh---cCceEEEEEEecccccc
Confidence 999998742211 1122222332 46789999999999753
No 158
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.75 E-value=1.9e-17 Score=123.57 Aligned_cols=119 Identities=18% Similarity=0.220 Sum_probs=82.9
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHhCC--CCc-----ccc------cceeeEEEE--EEEEE---CCcEEEEEEEeCCCc
Q 032487 8 NINAKLVLLGDVGAGKSSLVLRFVKGQ--FIE-----FQE------STIGAAFFS--QTLAV---NDATVKFEIWDTAGQ 69 (139)
Q Consensus 8 ~~~~ki~i~G~~~~GKssli~~l~~~~--~~~-----~~~------~~~~~~~~~--~~~~~---~~~~~~~~i~d~~g~ 69 (139)
....+++++|+.++|||||+++|+... ... ... ...|.+... ..+.+ ++..+.+.+|||||+
T Consensus 4 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh 83 (600)
T 2ywe_A 4 KNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGH 83 (600)
T ss_dssp GGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCS
T ss_pred cCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCc
Confidence 456799999999999999999998631 110 000 011111111 11122 445689999999999
Q ss_pred ccccccchhhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCC
Q 032487 70 ERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDA 130 (139)
Q Consensus 70 ~~~~~~~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~ 130 (139)
.+|.......+..+|++++|+|+.++.+......|..... .++|+++|+||+|+.+.
T Consensus 84 ~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~----~~ipiIvviNKiDl~~a 140 (600)
T 2ywe_A 84 VDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE----QDLVIIPVINKIDLPSA 140 (600)
T ss_dssp GGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH----TTCEEEEEEECTTSTTC
T ss_pred HhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH----CCCCEEEEEeccCcccc
Confidence 9998888888999999999999999877777777755443 36899999999999764
No 159
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.74 E-value=2.2e-17 Score=117.96 Aligned_cols=73 Identities=21% Similarity=0.271 Sum_probs=66.3
Q ss_pred EEEEEEeCCCcccccccchhhhcCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCCCC
Q 032487 59 VKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITN----------QASFERAKKWVQELQAQG-NPNMVMALAGNKADL 127 (139)
Q Consensus 59 ~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~~~~~----------~~s~~~~~~~~~~~~~~~-~~~~p~ivv~~k~D~ 127 (139)
+.+++||++|++.++..|..++++++++|+|||+++ ..+|+....|+..+.... ..+.|++||+||+|+
T Consensus 217 v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~piiLvgNK~DL 296 (402)
T 1azs_C 217 VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDL 296 (402)
T ss_dssp EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCEEEEEECHHH
T ss_pred ccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeEEEEEEChhh
Confidence 889999999999999999999999999999999999 889999999999988753 467999999999998
Q ss_pred cCCc
Q 032487 128 LDAR 131 (139)
Q Consensus 128 ~~~~ 131 (139)
.+++
T Consensus 297 ~~~k 300 (402)
T 1azs_C 297 LAEK 300 (402)
T ss_dssp HHHH
T ss_pred hhhh
Confidence 6643
No 160
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.74 E-value=1.2e-17 Score=122.27 Aligned_cols=116 Identities=17% Similarity=0.137 Sum_probs=79.9
Q ss_pred CCcceeEEEEEcCCCCcHHHHHHHHHhCC-------CCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchh
Q 032487 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQ-------FIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPM 78 (139)
Q Consensus 6 ~~~~~~ki~i~G~~~~GKssli~~l~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~ 78 (139)
...+.++|+++|+.++|||||+++|.+.. ...+..+....+.....+..++ ..+.+||+||++.+......
T Consensus 15 ~~m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~iiDtPGh~~~~~~~~~ 92 (482)
T 1wb1_A 15 MDFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAVVS 92 (482)
T ss_dssp CCCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHHHH
T ss_pred hcCCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECC--EEEEEEECCChHHHHHHHHH
Confidence 44668999999999999999999999766 1112222222222222233444 78999999999998877778
Q ss_pred hhcCCCEEEEEEECCC---HHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCC
Q 032487 79 YYRGAAAAIIVYDITN---QASFERAKKWVQELQAQGNPNMVMALAGNKADLLDA 130 (139)
Q Consensus 79 ~~~~~~~~i~v~~~~~---~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~ 130 (139)
.+..+|++++|+|+++ +.+.+ ++..+.. .+.|+++++||+|+.++
T Consensus 93 ~~~~aD~~ilVvda~~g~~~qt~e----~l~~~~~---~~ip~IvviNK~Dl~~~ 140 (482)
T 1wb1_A 93 AADIIDLALIVVDAKEGPKTQTGE----HMLILDH---FNIPIIVVITKSDNAGT 140 (482)
T ss_dssp HTTSCCEEEEEEETTTCSCHHHHH----HHHHHHH---TTCCBCEEEECTTSSCH
T ss_pred HHhhCCEEEEEEecCCCccHHHHH----HHHHHHH---cCCCEEEEEECCCcccc
Confidence 8899999999999987 33433 3333333 25778999999999763
No 161
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.74 E-value=8.6e-18 Score=120.47 Aligned_cols=117 Identities=16% Similarity=0.189 Sum_probs=81.5
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHhCC-------CCcc-------cccceeeEEEEEEEEECCcEEEEEEEeCCCcccccc
Q 032487 9 INAKLVLLGDVGAGKSSLVLRFVKGQ-------FIEF-------QESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHS 74 (139)
Q Consensus 9 ~~~ki~i~G~~~~GKssli~~l~~~~-------~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~ 74 (139)
..+||+++|+.++|||||+++|.+.. +... .....|.+.......+......+.+|||||+++|..
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~ 81 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK 81 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence 46899999999999999999998631 1100 001223333333344444457899999999999877
Q ss_pred cchhhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEeCCCCcC
Q 032487 75 LAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMV-MALAGNKADLLD 129 (139)
Q Consensus 75 ~~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~~k~D~~~ 129 (139)
.....+..+|++++|+|+++..... .++++..+.. .++| +++++||+|+.+
T Consensus 82 ~~~~~~~~aD~~ilVvda~~g~~~q-t~e~l~~~~~---~~vp~iivviNK~Dl~~ 133 (397)
T 1d2e_A 82 NMITGTAPLDGCILVVAANDGPMPQ-TREHLLLARQ---IGVEHVVVYVNKADAVQ 133 (397)
T ss_dssp HHHHTSSCCSEEEEEEETTTCSCHH-HHHHHHHHHH---TTCCCEEEEEECGGGCS
T ss_pred HHHhhHhhCCEEEEEEECCCCCCHH-HHHHHHHHHH---cCCCeEEEEEECcccCC
Confidence 7777889999999999999854332 2333344443 2567 789999999975
No 162
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.74 E-value=1.7e-17 Score=120.11 Aligned_cols=119 Identities=24% Similarity=0.203 Sum_probs=80.4
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHhCCC--Ccc----------cccce-------------------eeEEEEEEEEECC
Q 032487 8 NINAKLVLLGDVGAGKSSLVLRFVKGQF--IEF----------QESTI-------------------GAAFFSQTLAVND 56 (139)
Q Consensus 8 ~~~~ki~i~G~~~~GKssli~~l~~~~~--~~~----------~~~~~-------------------~~~~~~~~~~~~~ 56 (139)
+..++|+++|+.++|||||+++|++... ... ...+. |.+.......+..
T Consensus 22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~ 101 (434)
T 1zun_B 22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST 101 (434)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence 4568999999999999999999986531 000 00110 1111111122233
Q ss_pred cEEEEEEEeCCCcccccccchhhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcC
Q 032487 57 ATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLD 129 (139)
Q Consensus 57 ~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~ 129 (139)
...++.+|||||++.|.......+..+|++++|+|++++.. ...++++..+... ...|+++|+||+|+.+
T Consensus 102 ~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~-~qt~~~l~~~~~~--~~~~iIvviNK~Dl~~ 171 (434)
T 1zun_B 102 AKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQ-TQTRRHSYIASLL--GIKHIVVAINKMDLNG 171 (434)
T ss_dssp SSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSC-HHHHHHHHHHHHT--TCCEEEEEEECTTTTT
T ss_pred CCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc--CCCeEEEEEEcCcCCc
Confidence 34689999999999988877788899999999999988642 3344555544443 2236999999999976
No 163
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.74 E-value=5.3e-18 Score=126.62 Aligned_cols=116 Identities=22% Similarity=0.240 Sum_probs=82.1
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHhCCCCcc----cccceeeEEEEEEE------------EECCcEEEEEEEeCCCccc
Q 032487 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEF----QESTIGAAFFSQTL------------AVNDATVKFEIWDTAGQER 71 (139)
Q Consensus 8 ~~~~ki~i~G~~~~GKssli~~l~~~~~~~~----~~~~~~~~~~~~~~------------~~~~~~~~~~i~d~~g~~~ 71 (139)
.+..+|+++|++++|||||+++|.+..+... .+++.+..+..... ..+.....+.+|||||++.
T Consensus 3 ~r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~ 82 (594)
T 1g7s_A 3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEA 82 (594)
T ss_dssp ECCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSC
T ss_pred CCCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHH
Confidence 4678999999999999999999997644321 12233322221100 0001112589999999999
Q ss_pred ccccchhhhcCCCEEEEEEECCC---HHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCC
Q 032487 72 YHSLAPMYYRGAAAAIIVYDITN---QASFERAKKWVQELQAQGNPNMVMALAGNKADLLDA 130 (139)
Q Consensus 72 ~~~~~~~~~~~~~~~i~v~~~~~---~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~ 130 (139)
|...+...+..+|++++|+|+++ +.+++.+.. +.. .++|+++++||+|+...
T Consensus 83 F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~----l~~---~~vPiIVViNKiDl~~~ 137 (594)
T 1g7s_A 83 FTTLRKRGGALADLAILIVDINEGFKPQTQEALNI----LRM---YRTPFVVAANKIDRIHG 137 (594)
T ss_dssp CTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHH----HHH---TTCCEEEEEECGGGSTT
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHH----HHH---cCCeEEEEecccccccc
Confidence 99988888999999999999998 566554432 222 46899999999999753
No 164
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.74 E-value=9.6e-18 Score=116.28 Aligned_cols=115 Identities=16% Similarity=0.116 Sum_probs=76.7
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHhCCCCccc-ccceeeEEEEEEEEECCcEEEEEEEeCCCcc---------cccccch
Q 032487 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQ-ESTIGAAFFSQTLAVNDATVKFEIWDTAGQE---------RYHSLAP 77 (139)
Q Consensus 8 ~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~---------~~~~~~~ 77 (139)
.+..+++++|++|+|||||+|+|++....... .+..........+..+ ..++.+|||||.. .+.....
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~--~~~i~~iDTpG~~~~~~~~l~~~~~~~~~ 83 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEG--AYQAIYVDTPGLHMEEKRAINRLMNKAAS 83 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEET--TEEEEEESSSSCCHHHHHHHHHHHTCCTT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEEC--CeeEEEEECcCCCccchhhHHHHHHHHHH
Confidence 45668999999999999999999987653211 1111111112223333 3689999999987 2334445
Q ss_pred hhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcC
Q 032487 78 MYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLD 129 (139)
Q Consensus 78 ~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~ 129 (139)
..+..+|++++|+|+.+ +.....|+..... ..+.|+++++||+|+..
T Consensus 84 ~~l~~~D~vl~Vvd~~~---~~~~~~~i~~~l~--~~~~P~ilvlNK~D~~~ 130 (301)
T 1ega_A 84 SSIGDVELVIFVVEGTR---WTPDDEMVLNKLR--EGKAPVILAVNKVDNVQ 130 (301)
T ss_dssp SCCCCEEEEEEEEETTC---CCHHHHHHHHHHH--SSSSCEEEEEESTTTCC
T ss_pred HHHhcCCEEEEEEeCCC---CCHHHHHHHHHHH--hcCCCEEEEEECcccCc
Confidence 66888999999999976 2223333332222 34689999999999876
No 165
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.74 E-value=2.3e-18 Score=122.02 Aligned_cols=122 Identities=16% Similarity=0.276 Sum_probs=67.8
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHhCCCCcc-c--------ccceeeEEEEEEEEECCcEEEEEEEeCCCc-------cc
Q 032487 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEF-Q--------ESTIGAAFFSQTLAVNDATVKFEIWDTAGQ-------ER 71 (139)
Q Consensus 8 ~~~~ki~i~G~~~~GKssli~~l~~~~~~~~-~--------~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~-------~~ 71 (139)
...++|+++|++|+|||||+++|.+...... + .++.+.......+..++....+++|||||. +.
T Consensus 35 ~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~ 114 (361)
T 2qag_A 35 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 114 (361)
T ss_dssp CCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-------------
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHH
Confidence 3468999999999999999999876543321 1 134443333333344555678999999998 56
Q ss_pred ccccch-------hhhcCCC-----------EEEEEEECCC-HHHHHHHH-HHHHHHHHhCCCCCeEEEEEeCCCCcCCc
Q 032487 72 YHSLAP-------MYYRGAA-----------AAIIVYDITN-QASFERAK-KWVQELQAQGNPNMVMALAGNKADLLDAR 131 (139)
Q Consensus 72 ~~~~~~-------~~~~~~~-----------~~i~v~~~~~-~~s~~~~~-~~~~~~~~~~~~~~p~ivv~~k~D~~~~~ 131 (139)
+..++. .++..++ +.+++|++++ ..++..+. .|+..+ ....|+++|+||+|+...+
T Consensus 115 ~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l----~~~~piIlV~NK~Dl~~~~ 190 (361)
T 2qag_A 115 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI----HNKVNIVPVIAKADTLTLK 190 (361)
T ss_dssp -CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT----CS-SCEEEEEECCSSSCHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh----ccCCCEEEEEECCCCCCHH
Confidence 666654 4443332 2235555544 34444443 344333 3578999999999997755
Q ss_pred CC
Q 032487 132 KV 133 (139)
Q Consensus 132 ~v 133 (139)
++
T Consensus 191 ev 192 (361)
T 2qag_A 191 ER 192 (361)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 166
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.74 E-value=3.1e-18 Score=124.98 Aligned_cols=122 Identities=18% Similarity=0.167 Sum_probs=67.7
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHhC--CCCcc----------------------c-----ccceeeEEEEEEEEECCcE
Q 032487 8 NINAKLVLLGDVGAGKSSLVLRFVKG--QFIEF----------------------Q-----ESTIGAAFFSQTLAVNDAT 58 (139)
Q Consensus 8 ~~~~ki~i~G~~~~GKssli~~l~~~--~~~~~----------------------~-----~~~~~~~~~~~~~~~~~~~ 58 (139)
+..++|+++|+.++|||||+++|+.. .+... . ....|.+.......+....
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~ 120 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH 120 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCC
Confidence 45789999999999999999999752 11100 0 0011222222211222224
Q ss_pred EEEEEEeCCCcccccccchhhhcCCCEEEEEEECCCHH---HHHHHHHHHHHHHHhCCCCCe-EEEEEeCCCCcC
Q 032487 59 VKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQA---SFERAKKWVQELQAQGNPNMV-MALAGNKADLLD 129 (139)
Q Consensus 59 ~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~~~~~~~---s~~~~~~~~~~~~~~~~~~~p-~ivv~~k~D~~~ 129 (139)
.++.+|||||+++|.......+..+|++++|+|+++.. +|+....+.+.+......++| +++++||+|+.+
T Consensus 121 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~ 195 (467)
T 1r5b_A 121 RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPS 195 (467)
T ss_dssp EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTT
T ss_pred eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCC
Confidence 68999999999999887788889999999999999863 333222222222221123566 999999999964
No 167
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.73 E-value=9e-19 Score=131.25 Aligned_cols=122 Identities=26% Similarity=0.234 Sum_probs=81.6
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHhCCCCcccc-----------------------------cceeeEEEEEEEEECCc
Q 032487 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQE-----------------------------STIGAAFFSQTLAVNDA 57 (139)
Q Consensus 7 ~~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~ 57 (139)
.+..+||+++|++++|||||+++|++........ ...|.+.......+...
T Consensus 164 ~k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~ 243 (611)
T 3izq_1 164 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH 243 (611)
T ss_dssp CCCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECS
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecC
Confidence 4567899999999999999999998653211000 01122222222223333
Q ss_pred EEEEEEEeCCCcccccccchhhhcCCCEEEEEEECCCHHH---H---HHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCC
Q 032487 58 TVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQAS---F---ERAKKWVQELQAQGNPNMVMALAGNKADLLDA 130 (139)
Q Consensus 58 ~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~~~~~~~s---~---~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~ 130 (139)
..++.+|||||++.+.......+..+|++++|+|++++.. + ....+.+..+... ...|+++|+||+|+.+.
T Consensus 244 ~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~l--gi~~iIVVvNKiDl~~~ 320 (611)
T 3izq_1 244 RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL--GIHNLIIAMNKMDNVDW 320 (611)
T ss_dssp SCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTT--TCCEEEEEEECTTTTTT
T ss_pred CceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHc--CCCeEEEEEecccccch
Confidence 4789999999999988888888999999999999987531 1 1223333333322 23469999999999763
No 168
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.73 E-value=6e-17 Score=116.54 Aligned_cols=123 Identities=19% Similarity=0.218 Sum_probs=81.6
Q ss_pred CCcceeEEEEEcCCCCcHHHHHHHHHhCC---CCccccc--ceeeEEEEEEEEE-------------C--C----cEEEE
Q 032487 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQ---FIEFQES--TIGAAFFSQTLAV-------------N--D----ATVKF 61 (139)
Q Consensus 6 ~~~~~~ki~i~G~~~~GKssli~~l~~~~---~~~~~~~--~~~~~~~~~~~~~-------------~--~----~~~~~ 61 (139)
.++..++|+++|+.++|||||+++|.+.. +..+..+ |....+....+.. . + ....+
T Consensus 6 ~~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i 85 (410)
T 1kk1_A 6 SRQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRV 85 (410)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEE
T ss_pred cCCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEE
Confidence 45678999999999999999999999542 2222223 4433333322211 0 1 13789
Q ss_pred EEEeCCCcccccccchhhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCC
Q 032487 62 EIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDA 130 (139)
Q Consensus 62 ~i~d~~g~~~~~~~~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~ 130 (139)
.+||+||++.|.......+..+|++++|+|+++........+.+..+.... ..|+++++||+|+.+.
T Consensus 86 ~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~--~~~iivviNK~Dl~~~ 152 (410)
T 1kk1_A 86 SFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIG--QKNIIIAQNKIELVDK 152 (410)
T ss_dssp EEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHT--CCCEEEEEECGGGSCH
T ss_pred EEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcC--CCcEEEEEECccCCCH
Confidence 999999999887666666778899999999996431122223333333332 3579999999999764
No 169
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.73 E-value=1.6e-17 Score=126.16 Aligned_cols=122 Identities=17% Similarity=0.135 Sum_probs=84.0
Q ss_pred CCCcceeEEEEEcCCCCcHHHHHHHHHhCC--CC------cc--cc------cceeeEEEEEEEEECCcEEEEEEEeCCC
Q 032487 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQ--FI------EF--QE------STIGAAFFSQTLAVNDATVKFEIWDTAG 68 (139)
Q Consensus 5 ~~~~~~~ki~i~G~~~~GKssli~~l~~~~--~~------~~--~~------~~~~~~~~~~~~~~~~~~~~~~i~d~~g 68 (139)
.......+|+|+|++++|||||+++|+... .. .. .. ...+.+..............+.+|||||
T Consensus 7 ~~~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG 86 (691)
T 1dar_A 7 YDLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPG 86 (691)
T ss_dssp CCGGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCS
T ss_pred CccccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcC
Confidence 345678899999999999999999998421 10 00 00 0111111111122222247899999999
Q ss_pred cccccccchhhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCC
Q 032487 69 QERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDA 130 (139)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~ 130 (139)
+..+...+..++..+|++++|+|+.+..+......|.. +.. .++|+++|+||+|+...
T Consensus 87 ~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~-~~~---~~~p~ivviNKiD~~~~ 144 (691)
T 1dar_A 87 HVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQ-AEK---YKVPRIAFANKMDKTGA 144 (691)
T ss_dssp STTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHH---TTCCEEEEEECTTSTTC
T ss_pred ccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHH-HHH---cCCCEEEEEECCCcccC
Confidence 99988888888999999999999998877666655543 332 36899999999998764
No 170
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.72 E-value=1.9e-17 Score=122.32 Aligned_cols=120 Identities=13% Similarity=0.091 Sum_probs=79.8
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHhCCCCc-c-------------------cccceeeEEEEEEEEECCcEEEEEEEeCC
Q 032487 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIE-F-------------------QESTIGAAFFSQTLAVNDATVKFEIWDTA 67 (139)
Q Consensus 8 ~~~~ki~i~G~~~~GKssli~~l~~~~~~~-~-------------------~~~~~~~~~~~~~~~~~~~~~~~~i~d~~ 67 (139)
.+..+|+++|++++|||||+++|+...... . ..+..|.+.......+......+.+||||
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTP 90 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTP 90 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCC
T ss_pred cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECC
Confidence 457899999999999999999999632100 0 00111111111112222234789999999
Q ss_pred CcccccccchhhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCCc
Q 032487 68 GQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131 (139)
Q Consensus 68 g~~~~~~~~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~~ 131 (139)
|+..|......++..+|++++|+|+.++.... ...++..+ ...++|+++++||+|+....
T Consensus 91 G~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~-t~~~~~~~---~~~~ipiivviNK~Dl~~~~ 150 (529)
T 2h5e_A 91 GHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDR-TRKLMEVT---RLRDTPILTFMNKLDRDIRD 150 (529)
T ss_dssp CSTTCCHHHHHGGGGCSEEEEEEETTTCSCHH-HHHHHHHH---TTTTCCEEEEEECTTSCCSC
T ss_pred CChhHHHHHHHHHHHCCEEEEEEeCCccchHH-HHHHHHHH---HHcCCCEEEEEcCcCCcccc
Confidence 99998887778899999999999998864321 22232222 23578999999999997653
No 171
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.72 E-value=4.7e-17 Score=117.99 Aligned_cols=119 Identities=18% Similarity=0.171 Sum_probs=76.1
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHhCCCC-cccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccc----------
Q 032487 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFI-EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLA---------- 76 (139)
Q Consensus 8 ~~~~ki~i~G~~~~GKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~---------- 76 (139)
...++++++|++|+|||||+|+|.+.... ....+..+.+.....+.+++ ..+.+|||+|........
T Consensus 178 ~~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g--~~~~l~Dt~G~~~~~~~~~~~~e~~~~~ 255 (439)
T 1mky_A 178 TDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDG--RKYVFVDTAGLRRKSRVEPRTVEKYSNY 255 (439)
T ss_dssp CSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETT--EEEEESSCSCC-----------CCSCCH
T ss_pred ccCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECC--EEEEEEECCCCccccccchhhHHHHHHH
Confidence 35689999999999999999999987542 11222222223334556666 468899999974332211
Q ss_pred --hhhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCCcC
Q 032487 77 --PMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARK 132 (139)
Q Consensus 77 --~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~~~ 132 (139)
..++..+|++++++|+.++.+... ..+...+.. .+.|+++|+||+|+.+.+.
T Consensus 256 ~~~~~i~~ad~vllv~d~~~~~~~~~-~~i~~~l~~---~~~~~ilv~NK~Dl~~~~~ 309 (439)
T 1mky_A 256 RVVDSIEKADVVVIVLDATQGITRQD-QRMAGLMER---RGRASVVVFNKWDLVVHRE 309 (439)
T ss_dssp HHHHHHHHCSEEEEEEETTTCCCHHH-HHHHHHHHH---TTCEEEEEEECGGGSTTGG
T ss_pred HHHHHHhhCCEEEEEEeCCCCCCHHH-HHHHHHHHH---cCCCEEEEEECccCCCchh
Confidence 234677899999999987655443 223333332 4689999999999976544
No 172
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.72 E-value=4.2e-18 Score=124.04 Aligned_cols=120 Identities=13% Similarity=0.132 Sum_probs=80.5
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHhC--CCCcc----------------------cc-----cceeeEEEEEEEEECCc
Q 032487 7 KNINAKLVLLGDVGAGKSSLVLRFVKG--QFIEF----------------------QE-----STIGAAFFSQTLAVNDA 57 (139)
Q Consensus 7 ~~~~~ki~i~G~~~~GKssli~~l~~~--~~~~~----------------------~~-----~~~~~~~~~~~~~~~~~ 57 (139)
.+..++|+++|++++|||||+++|++. .+... .. ...|.+.......+...
T Consensus 4 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~ 83 (458)
T 1f60_A 4 EKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETP 83 (458)
T ss_dssp CCEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECS
T ss_pred CCceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecC
Confidence 356799999999999999999999864 11100 00 00112211111223334
Q ss_pred EEEEEEEeCCCcccccccchhhhcCCCEEEEEEECCCHH---HHH---HHHHHHHHHHHhCCCCCe-EEEEEeCCCCcC
Q 032487 58 TVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQA---SFE---RAKKWVQELQAQGNPNMV-MALAGNKADLLD 129 (139)
Q Consensus 58 ~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~~~~~~~---s~~---~~~~~~~~~~~~~~~~~p-~ivv~~k~D~~~ 129 (139)
..++.+|||||+++|.......+..+|++++|+|+++.. +|+ ..++++..+... ..| +++++||+|+.+
T Consensus 84 ~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~---~v~~iivviNK~Dl~~ 159 (458)
T 1f60_A 84 KYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTL---GVRQLIVAVNKMDSVK 159 (458)
T ss_dssp SEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHT---TCCEEEEEEECGGGGT
T ss_pred CceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHc---CCCeEEEEEEcccccc
Confidence 478999999999998887788889999999999998753 232 333344333332 454 999999999974
No 173
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.71 E-value=6.5e-17 Score=122.83 Aligned_cols=124 Identities=20% Similarity=0.235 Sum_probs=85.8
Q ss_pred CCCCCCCcceeEEEEEcCCCCcHHHHHHHHHh--CCCCcc---cc-----c------ceeeEEE--EEEEEECCcEEEEE
Q 032487 1 MATTGNKNINAKLVLLGDVGAGKSSLVLRFVK--GQFIEF---QE-----S------TIGAAFF--SQTLAVNDATVKFE 62 (139)
Q Consensus 1 ~~~~~~~~~~~ki~i~G~~~~GKssli~~l~~--~~~~~~---~~-----~------~~~~~~~--~~~~~~~~~~~~~~ 62 (139)
|+.........+|+|+|++++|||||+++|+. +..... .. . ..+.+.. ...+..+ ...+.
T Consensus 1 m~~~~~~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~--~~~i~ 78 (693)
T 2xex_A 1 MAREFSLEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWE--GHRVN 78 (693)
T ss_dssp -CCSSCSTTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEET--TEEEE
T ss_pred CCCcCCcccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEEC--CeeEE
Confidence 44555567788999999999999999999985 221100 00 0 0111111 1223333 37899
Q ss_pred EEeCCCcccccccchhhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCC
Q 032487 63 IWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDA 130 (139)
Q Consensus 63 i~d~~g~~~~~~~~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~ 130 (139)
+|||||+.++......+++.+|++++|+|+.+..+......|. .+.. .+.|+++|+||+|+...
T Consensus 79 liDTPG~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~-~~~~---~~~p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 79 IIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWR-QATT---YGVPRIVFVNKMDKLGA 142 (693)
T ss_dssp EECCCCCSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHH-HHHH---TTCCEEEEEECTTSTTC
T ss_pred EEECcCCcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHH-HHHH---cCCCEEEEEECCCcccc
Confidence 9999999988888888899999999999999876666555553 3333 36899999999998764
No 174
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.71 E-value=8e-17 Score=113.68 Aligned_cols=75 Identities=17% Similarity=0.231 Sum_probs=64.0
Q ss_pred cEEEEEEEeCCCcccccccchhhhcCCCEEEEEEECC----------CHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCC
Q 032487 57 ATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDIT----------NQASFERAKKWVQELQAQG-NPNMVMALAGNKA 125 (139)
Q Consensus 57 ~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~~~~----------~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~~k~ 125 (139)
..+.+++||++|++.++..|..++++++++++|||++ +..+++....|+..+.... ..+.|+++|+||+
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~ 260 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 260 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence 5688999999999999999999999999999999998 7788999889988887643 3679999999999
Q ss_pred CCcCCc
Q 032487 126 DLLDAR 131 (139)
Q Consensus 126 D~~~~~ 131 (139)
|+.+++
T Consensus 261 DL~~~k 266 (354)
T 2xtz_A 261 DIFEKK 266 (354)
T ss_dssp HHHHHH
T ss_pred chhhhh
Confidence 986543
No 175
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.70 E-value=1.5e-16 Score=121.04 Aligned_cols=121 Identities=17% Similarity=0.143 Sum_probs=83.7
Q ss_pred CCcceeEEEEEcCCCCcHHHHHHHHHhCC--CCcc-----------c---ccceeeEEEEE--EEEEC-----CcEEEEE
Q 032487 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQ--FIEF-----------Q---ESTIGAAFFSQ--TLAVN-----DATVKFE 62 (139)
Q Consensus 6 ~~~~~~ki~i~G~~~~GKssli~~l~~~~--~~~~-----------~---~~~~~~~~~~~--~~~~~-----~~~~~~~ 62 (139)
...+..+|+|+|+.++|||||+++|+... +... . ....+.+.... .+.++ +..+.+.
T Consensus 6 ~~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~ 85 (704)
T 2rdo_7 6 PIARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRIN 85 (704)
T ss_pred CcccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEE
Confidence 34667899999999999999999997531 1100 0 00111222221 22222 2348899
Q ss_pred EEeCCCcccccccchhhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCC
Q 032487 63 IWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDA 130 (139)
Q Consensus 63 i~d~~g~~~~~~~~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~ 130 (139)
+|||||+.+|.......+..+|++++|+|+.+.........| ..+. ..++|+++|+||+|+...
T Consensus 86 liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~-~~~~---~~~ip~ilviNKiD~~~~ 149 (704)
T 2rdo_7 86 IIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVW-RQAN---KYKVPRIAFVNKMDRMGA 149 (704)
T ss_pred EEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHH-HHHH---HcCCCEEEEEeCCCcccc
Confidence 999999999888888889999999999999987655444444 3332 246899999999998764
No 176
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.69 E-value=4.3e-17 Score=112.48 Aligned_cols=121 Identities=20% Similarity=0.240 Sum_probs=75.5
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHhCCCCccc------ccce-----------------e---eEEE-------------
Q 032487 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQ------ESTI-----------------G---AAFF------------- 48 (139)
Q Consensus 8 ~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~------~~~~-----------------~---~~~~------------- 48 (139)
....+|+++|.+|+|||||+|+|.+..+.+.. .++. | .++.
T Consensus 24 ~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i 103 (299)
T 2aka_B 24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 103 (299)
T ss_dssp CCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHh
Confidence 45679999999999999999999988764211 1110 0 0000
Q ss_pred ----------EEEEEE-CCcEEEEEEEeCCCccc-------------ccccchhhhcCCCEEE-EEEECCCHHHHHHHHH
Q 032487 49 ----------SQTLAV-NDATVKFEIWDTAGQER-------------YHSLAPMYYRGAAAAI-IVYDITNQASFERAKK 103 (139)
Q Consensus 49 ----------~~~~~~-~~~~~~~~i~d~~g~~~-------------~~~~~~~~~~~~~~~i-~v~~~~~~~s~~~~~~ 103 (139)
...+.. ......+.+|||||... +......++..++.++ +|+|+++..+......
T Consensus 104 ~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~ 183 (299)
T 2aka_B 104 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 183 (299)
T ss_dssp CSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHH
T ss_pred cccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHH
Confidence 000000 00125799999999642 3344556777888666 6899987544333333
Q ss_pred HHHHHHHhCCCCCeEEEEEeCCCCcCCc
Q 032487 104 WVQELQAQGNPNMVMALAGNKADLLDAR 131 (139)
Q Consensus 104 ~~~~~~~~~~~~~p~ivv~~k~D~~~~~ 131 (139)
++..+. ..+.|+++|+||+|+.+..
T Consensus 184 ~~~~~~---~~~~~~i~V~NK~Dl~~~~ 208 (299)
T 2aka_B 184 IAKEVD---PQGQRTIGVITKLDLMDEG 208 (299)
T ss_dssp HHHHHC---TTCSSEEEEEECGGGSCTT
T ss_pred HHHHhC---CCCCeEEEEEEccccCCCC
Confidence 444332 3578999999999997654
No 177
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.69 E-value=1.1e-16 Score=123.79 Aligned_cols=119 Identities=18% Similarity=0.154 Sum_probs=85.7
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHhCCCCc------------------ccccceeeEEEEEEEE------------ECC
Q 032487 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIE------------------FQESTIGAAFFSQTLA------------VND 56 (139)
Q Consensus 7 ~~~~~ki~i~G~~~~GKssli~~l~~~~~~~------------------~~~~~~~~~~~~~~~~------------~~~ 56 (139)
.....||+|+|+.++|||||+++|+...... ....++........+. .++
T Consensus 16 ~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~ 95 (842)
T 1n0u_A 16 VTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDG 95 (842)
T ss_dssp GGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCS
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccC
Confidence 3457899999999999999999998641100 0001221111112222 133
Q ss_pred cEEEEEEEeCCCcccccccchhhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcC
Q 032487 57 ATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLD 129 (139)
Q Consensus 57 ~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~ 129 (139)
..+.+.+|||||+.+|...+..+++.+|++++|+|+.++.++.....|..... .++|+++++||+|+..
T Consensus 96 ~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~----~~~p~ilviNK~D~~~ 164 (842)
T 1n0u_A 96 NSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALG----ERIKPVVVINKVDRAL 164 (842)
T ss_dssp SEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHH----TTCEEEEEEECHHHHH
T ss_pred CCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH----cCCCeEEEEECCCcch
Confidence 46889999999999999888899999999999999999877777665543332 3689999999999863
No 178
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.68 E-value=1.5e-16 Score=112.74 Aligned_cols=121 Identities=16% Similarity=0.216 Sum_probs=78.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCCCCccccccee---eEE-----------EE--------------------------
Q 032487 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIG---AAF-----------FS-------------------------- 49 (139)
Q Consensus 10 ~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~---~~~-----------~~-------------------------- 49 (139)
-.+|+++|++|+|||||+|+|.+..+.+....... ... ..
T Consensus 34 lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (360)
T 3t34_A 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETDR 113 (360)
T ss_dssp CCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHHH
Confidence 34899999999999999999999776322111110 000 00
Q ss_pred ------------EEEEE-CCcEEEEEEEeCCCcccc-------------cccchhhhcCCCEEEEEEECCCHHHHHHHHH
Q 032487 50 ------------QTLAV-NDATVKFEIWDTAGQERY-------------HSLAPMYYRGAAAAIIVYDITNQASFERAKK 103 (139)
Q Consensus 50 ------------~~~~~-~~~~~~~~i~d~~g~~~~-------------~~~~~~~~~~~~~~i~v~~~~~~~s~~~~~~ 103 (139)
..+.+ ......+.+|||||...+ ......++.++|+++++++..+.+... ..
T Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~~ 191 (360)
T 3t34_A 114 ETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--SD 191 (360)
T ss_dssp TSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--CH
T ss_pred hcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--HH
Confidence 00010 011235899999998765 445566789999999999865433221 34
Q ss_pred HHHHHHHhCCCCCeEEEEEeCCCCcCCcC
Q 032487 104 WVQELQAQGNPNMVMALAGNKADLLDARK 132 (139)
Q Consensus 104 ~~~~~~~~~~~~~p~ivv~~k~D~~~~~~ 132 (139)
|+..+........|+++|+||+|+.+...
T Consensus 192 ~~~l~~~~~~~~~~~i~V~nK~Dl~~~~~ 220 (360)
T 3t34_A 192 AIKISREVDPSGDRTFGVLTKIDLMDKGT 220 (360)
T ss_dssp HHHHHHHSCTTCTTEEEEEECGGGCCTTC
T ss_pred HHHHHHHhcccCCCEEEEEeCCccCCCcc
Confidence 55555555556789999999999976543
No 179
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.68 E-value=9.3e-17 Score=111.62 Aligned_cols=70 Identities=19% Similarity=0.195 Sum_probs=45.6
Q ss_pred EEEEEEeCCCccc-------------ccccchhhhcCCCEEEEEEECCCHHHH-HHHHHHHHHHHHhCCCCCeEEEEEeC
Q 032487 59 VKFEIWDTAGQER-------------YHSLAPMYYRGAAAAIIVYDITNQASF-ERAKKWVQELQAQGNPNMVMALAGNK 124 (139)
Q Consensus 59 ~~~~i~d~~g~~~-------------~~~~~~~~~~~~~~~i~v~~~~~~~s~-~~~~~~~~~~~~~~~~~~p~ivv~~k 124 (139)
.++.+|||||... +......++..+|++++|+|..+.... .....++..+ ...+.|+++|+||
T Consensus 131 ~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~---~~~~~~~i~v~NK 207 (315)
T 1jwy_B 131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEV---DPEGKRTIGVITK 207 (315)
T ss_dssp CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHH---CSSCSSEEEEEEC
T ss_pred CCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHh---CCCCCcEEEEEcC
Confidence 4689999999753 334445678899999999997432211 1111222222 2357899999999
Q ss_pred CCCcCCc
Q 032487 125 ADLLDAR 131 (139)
Q Consensus 125 ~D~~~~~ 131 (139)
+|+.+..
T Consensus 208 ~Dl~~~~ 214 (315)
T 1jwy_B 208 LDLMDKG 214 (315)
T ss_dssp TTSSCSS
T ss_pred cccCCcc
Confidence 9987654
No 180
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.67 E-value=5.5e-17 Score=115.28 Aligned_cols=103 Identities=10% Similarity=0.082 Sum_probs=75.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEEEEEEE
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYD 91 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~~ 91 (139)
+|+++|++++|||||+++|.. ...|....+ ..+.....++.+|||||+++|.......+..+|++++|+|
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~~------~giTi~~~~----~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd 92 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLGK------KGTSSDITM----YNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP 92 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTSE------EEEESSSEE----EEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHh------CCEEEEeeE----EEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc
Confidence 999999999999999999981 122222221 2233334679999999999887766777899999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCCCCeE-EEEEe-CCCCcCC
Q 032487 92 ITNQASFERAKKWVQELQAQGNPNMVM-ALAGN-KADLLDA 130 (139)
Q Consensus 92 ~~~~~s~~~~~~~~~~~~~~~~~~~p~-ivv~~-k~D~~~~ 130 (139)
+ .......++++..+... +.|. ++++| |+|+ +.
T Consensus 93 -~-~g~~~qt~e~~~~~~~~---~i~~~ivvvNNK~Dl-~~ 127 (370)
T 2elf_A 93 -P-QGLDAHTGECIIALDLL---GFKHGIIALTRSDST-HM 127 (370)
T ss_dssp -T-TCCCHHHHHHHHHHHHT---TCCEEEEEECCGGGS-CH
T ss_pred -C-CCCcHHHHHHHHHHHHc---CCCeEEEEEEeccCC-CH
Confidence 4 44555666777666654 4566 88899 9999 54
No 181
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.67 E-value=7.7e-17 Score=126.52 Aligned_cols=119 Identities=16% Similarity=0.169 Sum_probs=81.5
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHhCCC-------Cc-------ccccceeeEEEEEEEEECCcEEEEEEEeCCCcccc
Q 032487 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQF-------IE-------FQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERY 72 (139)
Q Consensus 7 ~~~~~ki~i~G~~~~GKssli~~l~~~~~-------~~-------~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~ 72 (139)
.+..++|+++|++++|||||+++|.+... .. ......|.++....+.++.....+.+|||||+++|
T Consensus 293 ~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF 372 (1289)
T 3avx_A 293 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADY 372 (1289)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHH
T ss_pred cCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHH
Confidence 45679999999999999999999986310 00 01122333333333334444578999999999998
Q ss_pred cccchhhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEeCCCCcC
Q 032487 73 HSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMV-MALAGNKADLLD 129 (139)
Q Consensus 73 ~~~~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~~k~D~~~ 129 (139)
.......+..+|++++|+|++++.. ...++++..+... ++| +++++||+|+.+
T Consensus 373 ~~~mi~gas~AD~aILVVDAtdGv~-~QTrEhL~ll~~l---gIP~IIVVINKiDLv~ 426 (1289)
T 3avx_A 373 VKNMITGAAQMDGAILVVAATDGPM-PQTREHILLGRQV---GVPYIIVFLNKCDMVD 426 (1289)
T ss_dssp HHHHHHTSCCCSEEEEEEETTTCSC-TTHHHHHHHHHHH---TCSCEEEEEECCTTCC
T ss_pred HHHHHHHHhhCCEEEEEEcCCccCc-HHHHHHHHHHHHc---CCCeEEEEEeeccccc
Confidence 8777778899999999999988643 2344555555543 567 799999999975
No 182
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.67 E-value=4.1e-16 Score=118.48 Aligned_cols=120 Identities=15% Similarity=0.200 Sum_probs=79.9
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHhCCCCcc-ccccee-eEEEE------EEEEE--------------------------
Q 032487 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEF-QESTIG-AAFFS------QTLAV-------------------------- 54 (139)
Q Consensus 9 ~~~ki~i~G~~~~GKssli~~l~~~~~~~~-~~~~~~-~~~~~------~~~~~-------------------------- 54 (139)
..++|+|+|.+|+|||||+|+|++....+. ..++.. .+... .+..+
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~ 147 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAK 147 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHH
Confidence 478999999999999999999998765432 122210 00000 01111
Q ss_pred --------------------CCcE--EEEEEEeCCCcccc---cccchhhhcCCCEEEEEEECCCHHHHHHHHHHHHHHH
Q 032487 55 --------------------NDAT--VKFEIWDTAGQERY---HSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQ 109 (139)
Q Consensus 55 --------------------~~~~--~~~~i~d~~g~~~~---~~~~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~~~ 109 (139)
.... ..+.+|||||.... ......++..+|++++|+|++++.+......|...+.
T Consensus 148 ~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~ 227 (695)
T 2j69_A 148 KLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIK 227 (695)
T ss_dssp HHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTT
T ss_pred HHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHH
Confidence 0000 25899999997543 2344567889999999999998877666655544433
Q ss_pred HhCCCCCeEEEEEeCCCCcCCc
Q 032487 110 AQGNPNMVMALAGNKADLLDAR 131 (139)
Q Consensus 110 ~~~~~~~p~ivv~~k~D~~~~~ 131 (139)
....|+++|+||+|+....
T Consensus 228 ---~~~~~iiiVlNK~Dl~~~~ 246 (695)
T 2j69_A 228 ---GRGLTVFFLVNAWDQVRES 246 (695)
T ss_dssp ---TSCCCEEEEEECGGGGGGG
T ss_pred ---hhCCCEEEEEECccccccc
Confidence 2357899999999987654
No 183
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.67 E-value=2.7e-17 Score=122.09 Aligned_cols=122 Identities=15% Similarity=0.215 Sum_probs=80.0
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHhCCCC---cccccceeeEEEEEE----------------------E----------
Q 032487 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFI---EFQESTIGAAFFSQT----------------------L---------- 52 (139)
Q Consensus 8 ~~~~ki~i~G~~~~GKssli~~l~~~~~~---~~~~~~~~~~~~~~~----------------------~---------- 52 (139)
....+|+|+|.+|+|||||+|+|++..+. ....++......... +
T Consensus 63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~ 142 (550)
T 2qpt_A 63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNR 142 (550)
T ss_dssp SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhccccccc
Confidence 45689999999999999999999988753 111111110000000 0
Q ss_pred ----EECCc-EEEEEEEeCCCccc-----------ccccchhhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCC
Q 032487 53 ----AVNDA-TVKFEIWDTAGQER-----------YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNM 116 (139)
Q Consensus 53 ----~~~~~-~~~~~i~d~~g~~~-----------~~~~~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~ 116 (139)
...+. ...+.+|||||... +......++..+|++++|+|+++....+....|+..+.. ...
T Consensus 143 ~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~---~~~ 219 (550)
T 2qpt_A 143 FMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG---HED 219 (550)
T ss_dssp EEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT---CGG
T ss_pred ceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh---cCC
Confidence 00000 02589999999864 334455667889999999999875544555666655543 357
Q ss_pred eEEEEEeCCCCcCCcC
Q 032487 117 VMALAGNKADLLDARK 132 (139)
Q Consensus 117 p~ivv~~k~D~~~~~~ 132 (139)
|+++|+||+|+.+..+
T Consensus 220 pvilVlNK~Dl~~~~e 235 (550)
T 2qpt_A 220 KIRVVLNKADMVETQQ 235 (550)
T ss_dssp GEEEEEECGGGSCHHH
T ss_pred CEEEEEECCCccCHHH
Confidence 8999999999976543
No 184
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.66 E-value=5.2e-18 Score=126.78 Aligned_cols=120 Identities=22% Similarity=0.242 Sum_probs=64.3
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHhCCCCcc-----------------------------cccceeeEEEEEEEEECCc
Q 032487 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEF-----------------------------QESTIGAAFFSQTLAVNDA 57 (139)
Q Consensus 7 ~~~~~ki~i~G~~~~GKssli~~l~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~ 57 (139)
.+..++|+++|++++|||||+++|++....-. .....|++.......+...
T Consensus 174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~ 253 (592)
T 3mca_A 174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD 253 (592)
T ss_dssp CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC
Confidence 45578999999999999999999974210000 0001122222222233333
Q ss_pred EEEEEEEeCCCcccccccchhhhcCCCEEEEEEECCCHH---HH---HHHHHHHHHHHHhCCCCCe-EEEEEeCCCCcC
Q 032487 58 TVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQA---SF---ERAKKWVQELQAQGNPNMV-MALAGNKADLLD 129 (139)
Q Consensus 58 ~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~~~~~~~---s~---~~~~~~~~~~~~~~~~~~p-~ivv~~k~D~~~ 129 (139)
...+.+|||||++.|.......+..+|++|+|+|++++. .+ ....+++..+... ++| +++|+||+|+.+
T Consensus 254 ~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~l---gip~iIvviNKiDl~~ 329 (592)
T 3mca_A 254 KKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRAL---GISEIVVSVNKLDLMS 329 (592)
T ss_dssp -----CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHS---SCCCEEEEEECGGGGT
T ss_pred CeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHc---CCCeEEEEEecccccc
Confidence 478999999999999888888889999999999998642 11 1123333333333 344 999999999975
No 185
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.63 E-value=9.9e-16 Score=109.70 Aligned_cols=85 Identities=21% Similarity=0.171 Sum_probs=47.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCcccc------cceeeEEEEEE---------------EEECC-cEEEEEEEeCCC
Q 032487 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQE------STIGAAFFSQT---------------LAVND-ATVKFEIWDTAG 68 (139)
Q Consensus 11 ~ki~i~G~~~~GKssli~~l~~~~~~~~~~------~~~~~~~~~~~---------------~~~~~-~~~~~~i~d~~g 68 (139)
++|+++|.+|+|||||+|+|.+........ +..+..+.... ..+++ ...++.+|||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 589999999999999999999876322111 12221111100 01122 246799999999
Q ss_pred ccc----ccccch---hhhcCCCEEEEEEECCCH
Q 032487 69 QER----YHSLAP---MYYRGAAAAIIVYDITNQ 95 (139)
Q Consensus 69 ~~~----~~~~~~---~~~~~~~~~i~v~~~~~~ 95 (139)
... ...+.. ..++.+|++++|+|+.+.
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 853 222222 346889999999999874
No 186
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.63 E-value=6.5e-16 Score=101.39 Aligned_cols=114 Identities=18% Similarity=0.254 Sum_probs=68.7
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCccc----------ccccch
Q 032487 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER----------YHSLAP 77 (139)
Q Consensus 8 ~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~----------~~~~~~ 77 (139)
....+++++|++|+|||||++++.+..+.....++.|.+.....+..++ .+.+||+||... +.....
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 100 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRALG 100 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHHHH
Confidence 4567899999999999999999998764333344555444333333333 478999999742 121122
Q ss_pred hhh---cCCCEEEEEEECCCHHHHHH--HHHHHHHHHHhCCCCCeEEEEEeCCCCcCC
Q 032487 78 MYY---RGAAAAIIVYDITNQASFER--AKKWVQELQAQGNPNMVMALAGNKADLLDA 130 (139)
Q Consensus 78 ~~~---~~~~~~i~v~~~~~~~s~~~--~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~ 130 (139)
.++ ..++++++++|+.++.+... +..|+ . ....|+++++||+|+...
T Consensus 101 ~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~---~---~~~~~~~~v~nK~D~~s~ 152 (210)
T 1pui_A 101 EYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWA---V---DSNIAVLVLLTKADKLAS 152 (210)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHH---H---HTTCCEEEEEECGGGSCH
T ss_pred HHHHhhhcccEEEEEEECCCCCchhHHHHHHHH---H---HcCCCeEEEEecccCCCc
Confidence 233 46889999999988654322 22332 2 236789999999998653
No 187
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.60 E-value=2.1e-15 Score=114.18 Aligned_cols=117 Identities=11% Similarity=0.058 Sum_probs=81.3
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHhCCCCcccc-------------c---ceeeEEEEEEEEECCcEEEEEEEeCCCccc
Q 032487 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQE-------------S---TIGAAFFSQTLAVNDATVKFEIWDTAGQER 71 (139)
Q Consensus 8 ~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~-------------~---~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~ 71 (139)
....+++++|+.|+|||||+++|++........ + ..+.++.............+.+|||||+..
T Consensus 7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~ 86 (665)
T 2dy1_A 7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGD 86 (665)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGG
T ss_pred CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccc
Confidence 456789999999999999999998432210000 0 011222222223323347899999999999
Q ss_pred ccccchhhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCc
Q 032487 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLL 128 (139)
Q Consensus 72 ~~~~~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~ 128 (139)
+......++..+|++++++|+.+..... .+.++..+.. .+.|+++++||+|+.
T Consensus 87 f~~~~~~~l~~ad~~ilVvD~~~g~~~q-t~~~~~~~~~---~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 87 FVGEIRGALEAADAALVAVSAEAGVQVG-TERAWTVAER---LGLPRMVVVTKLDKG 139 (665)
T ss_dssp GHHHHHHHHHHCSEEEEEEETTTCSCHH-HHHHHHHHHH---TTCCEEEEEECGGGC
T ss_pred hHHHHHHHHhhcCcEEEEEcCCcccchh-HHHHHHHHHH---ccCCEEEEecCCchh
Confidence 8887888899999999999987754432 3344454444 368999999999987
No 188
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.57 E-value=9.1e-15 Score=105.19 Aligned_cols=123 Identities=15% Similarity=0.207 Sum_probs=67.5
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHhCCCCccc--------ccceeeEEEEEEEEECCcEEEEEEEeCCCccccc-----
Q 032487 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQ--------ESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYH----- 73 (139)
Q Consensus 7 ~~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~----- 73 (139)
+...++|+|+|++|+|||||++.|++....... .++.+...........+....+++||++|.....
T Consensus 28 ~~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~ 107 (418)
T 2qag_C 28 RGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNC 107 (418)
T ss_dssp -CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------
T ss_pred cCCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhh
Confidence 345789999999999999999999987653111 1112211111111123334579999999975431
Q ss_pred --c------------------cchhhhcCCCEEEEEEECCCH-HHHHHHH-HHHHHHHHhCCCCCeEEEEEeCCCCcCCc
Q 032487 74 --S------------------LAPMYYRGAAAAIIVYDITNQ-ASFERAK-KWVQELQAQGNPNMVMALAGNKADLLDAR 131 (139)
Q Consensus 74 --~------------------~~~~~~~~~~~~i~v~~~~~~-~s~~~~~-~~~~~~~~~~~~~~p~ivv~~k~D~~~~~ 131 (139)
. +....+.++++.+++|..... .++.... .|+..+. ...|+|+|+||+|+...+
T Consensus 108 ~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~----~~v~iIlVinK~Dll~~~ 183 (418)
T 2qag_C 108 WQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH----EKVNIIPLIAKADTLTPE 183 (418)
T ss_dssp CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT----TTSEEEEEEESTTSSCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh----ccCcEEEEEEcccCccHH
Confidence 1 122344556665555554432 2444433 5666553 368999999999987654
Q ss_pred CC
Q 032487 132 KV 133 (139)
Q Consensus 132 ~v 133 (139)
++
T Consensus 184 ev 185 (418)
T 2qag_C 184 EC 185 (418)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 189
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.56 E-value=4e-15 Score=105.16 Aligned_cols=120 Identities=15% Similarity=0.144 Sum_probs=69.7
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHhCCCCcccc----cceeeEEE------------------------------------
Q 032487 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQE----STIGAAFF------------------------------------ 48 (139)
Q Consensus 9 ~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~----~~~~~~~~------------------------------------ 48 (139)
...+|+++|.+|+|||||+|+|.+.++.+... ...+....
T Consensus 30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~ 109 (353)
T 2x2e_A 30 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 109 (353)
T ss_dssp CCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhc
Confidence 45799999999999999999999887642111 00110000
Q ss_pred ---------EEEEEEC-CcEEEEEEEeCCCccc-------------ccccchhhhcCCC-EEEEEEECCCHHHHHHHHHH
Q 032487 49 ---------SQTLAVN-DATVKFEIWDTAGQER-------------YHSLAPMYYRGAA-AAIIVYDITNQASFERAKKW 104 (139)
Q Consensus 49 ---------~~~~~~~-~~~~~~~i~d~~g~~~-------------~~~~~~~~~~~~~-~~i~v~~~~~~~s~~~~~~~ 104 (139)
...+.+. .....+.+|||||... +......++..++ +++++.+++....-. .+
T Consensus 110 g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~---~~ 186 (353)
T 2x2e_A 110 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANS---DA 186 (353)
T ss_dssp TTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGC---HH
T ss_pred ccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchh---HH
Confidence 0001110 0125699999999632 2334445555555 555566665422211 22
Q ss_pred HHHHHHhCCCCCeEEEEEeCCCCcCCc
Q 032487 105 VQELQAQGNPNMVMALAGNKADLLDAR 131 (139)
Q Consensus 105 ~~~~~~~~~~~~p~ivv~~k~D~~~~~ 131 (139)
...+......+.|+++|+||+|+.+..
T Consensus 187 ~~i~~~~~~~~~~~i~V~NK~Dl~~~~ 213 (353)
T 2x2e_A 187 LKVAKEVDPQGQRTIGVITKLDLMDEG 213 (353)
T ss_dssp HHHHHHHCTTCTTEEEEEECGGGSCTT
T ss_pred HHHHHHhCcCCCceEEEeccccccCcc
Confidence 223333434678999999999997643
No 190
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.52 E-value=1.1e-13 Score=102.68 Aligned_cols=118 Identities=14% Similarity=0.122 Sum_probs=82.6
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHhCCCC------------------c----ccccceeeEEEEEEEEECCcEEEEEEEe
Q 032487 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFI------------------E----FQESTIGAAFFSQTLAVNDATVKFEIWD 65 (139)
Q Consensus 8 ~~~~ki~i~G~~~~GKssli~~l~~~~~~------------------~----~~~~~~~~~~~~~~~~~~~~~~~~~i~d 65 (139)
.+.-+|+|+|+.++|||||..+|+...-. . +..+ |.+..+..+.+.++.+.++++|
T Consensus 29 ~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreR--GITI~s~~~~~~~~~~~iNlID 106 (548)
T 3vqt_A 29 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERER--GISVTTSVMQFPYRDRVVNLLD 106 (548)
T ss_dssp HTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC----------------------CTTTEEEEEETTEEEEEEC
T ss_pred cccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHC--CCcEeeceEEEEECCEEEEEEe
Confidence 35678999999999999999998732100 0 0011 1111122222333348899999
Q ss_pred CCCcccccccchhhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCCc
Q 032487 66 TAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131 (139)
Q Consensus 66 ~~g~~~~~~~~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~~ 131 (139)
|||+.+|..-....++-+|++++|+|+.+.........| +.+.. .++|.+++.||+|.....
T Consensus 107 TPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~-~~a~~---~~lp~i~fINK~Dr~~ad 168 (548)
T 3vqt_A 107 TPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLM-DVCRM---RATPVMTFVNKMDREALH 168 (548)
T ss_dssp CCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHH-HHHHH---TTCCEEEEEECTTSCCCC
T ss_pred CCCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHH-HHHHH---hCCceEEEEecccchhcc
Confidence 999999998888889999999999999987665555555 33333 368999999999987653
No 191
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.52 E-value=7e-14 Score=99.26 Aligned_cols=115 Identities=14% Similarity=0.077 Sum_probs=80.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCccccccc-------chhhhcC
Q 032487 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSL-------APMYYRG 82 (139)
Q Consensus 10 ~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~-------~~~~~~~ 82 (139)
..+|.++|.||+|||||+|+|.+........+....+.....+.+++ .+++++|+||.-..... .....+.
T Consensus 72 ~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~--~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ 149 (376)
T 4a9a_A 72 VASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKG--AKIQMLDLPGIIDGAKDGRGRGKQVIAVART 149 (376)
T ss_dssp SEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETT--EEEEEEECGGGCCC-----CHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCC--cEEEEEeCCCccCCchhhhHHHHHHHHHHHh
Confidence 45899999999999999999998775555556565666677777777 67899999996322111 1134678
Q ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhC--CCCCeEEEEEeCCCCc
Q 032487 83 AAAAIIVYDITNQASFERAKKWVQELQAQG--NPNMVMALAGNKADLL 128 (139)
Q Consensus 83 ~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~--~~~~p~ivv~~k~D~~ 128 (139)
+|++++|+|+.++..- .+.....+.... ....|.+++.||.|..
T Consensus 150 ad~il~vvD~~~p~~~--~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~ 195 (376)
T 4a9a_A 150 CNLLFIILDVNKPLHH--KQIIEKELEGVGIRLNKTPPDILIKKKEKG 195 (376)
T ss_dssp CSEEEEEEETTSHHHH--HHHHHHHHHHTTEEETCCCCCEEEEECSSS
T ss_pred cCccccccccCccHHH--HHHHHHHHHHhhHhhccCChhhhhhHhhhh
Confidence 9999999999987432 223333344332 2456788899999964
No 192
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.51 E-value=3.6e-14 Score=100.52 Aligned_cols=86 Identities=16% Similarity=0.225 Sum_probs=64.1
Q ss_pred cceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEEEEEEECCC----------HHHHHHHHHHHHHHHH
Q 032487 41 STIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITN----------QASFERAKKWVQELQA 110 (139)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~~~~~----------~~s~~~~~~~~~~~~~ 110 (139)
+|.|... ..+.+++ +.+.+||++|++.++..|..++++++++|+|||+++ ..++.....|+..+.+
T Consensus 187 ~T~Gi~~--~~~~~~~--~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~ 262 (362)
T 1zcb_A 187 PTKGIHE--YDFEIKN--VPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVN 262 (362)
T ss_dssp CCSSEEE--EEEEETT--EEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHT
T ss_pred CccceEE--EEeeeCC--eEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhc
Confidence 3555443 3444554 889999999999999999999999999999999999 6789988889888876
Q ss_pred hC-CCCCeEEEEEeCCCCcCC
Q 032487 111 QG-NPNMVMALAGNKADLLDA 130 (139)
Q Consensus 111 ~~-~~~~p~ivv~~k~D~~~~ 130 (139)
.. ..+.|+++++||+|+.++
T Consensus 263 ~~~~~~~piILv~NK~DL~~~ 283 (362)
T 1zcb_A 263 NRVFSNVSIILFLNKTDLLEE 283 (362)
T ss_dssp CGGGTTSEEEEEEECHHHHHH
T ss_pred chhhCCCCEEEEEEChhhhhh
Confidence 42 367999999999998643
No 193
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.50 E-value=1.1e-13 Score=99.58 Aligned_cols=117 Identities=20% Similarity=0.150 Sum_probs=76.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCccc----ccccchh---hhcCCC
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER----YHSLAPM---YYRGAA 84 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~----~~~~~~~---~~~~~~ 84 (139)
.+.|+|++|+|||||++.+.+........+..........+..++ ...+.+||++|... +..+... ....++
T Consensus 159 ~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~ 237 (416)
T 1udx_A 159 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIARTR 237 (416)
T ss_dssp SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred EEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHHHHH
Confidence 478999999999999999998643211111111112223344443 25689999999732 2222222 245799
Q ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEeCCCCcCC
Q 032487 85 AAIIVYDITNQASFERAKKWVQELQAQGN--PNMVMALAGNKADLLDA 130 (139)
Q Consensus 85 ~~i~v~~~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~~k~D~~~~ 130 (139)
.++.++|++ ...+..+..|.+.+..... ...|.++++||+|+...
T Consensus 238 ~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~ 284 (416)
T 1udx_A 238 VLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE 284 (416)
T ss_dssp EEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH
T ss_pred hhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH
Confidence 999999997 5566667777766665431 35789999999998754
No 194
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.48 E-value=2.3e-14 Score=99.28 Aligned_cols=121 Identities=17% Similarity=0.257 Sum_probs=59.2
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHhC-CCCccc--------ccceeeEEEEEEEEECCcEEEEEEEeCCCc-------c
Q 032487 7 KNINAKLVLLGDVGAGKSSLVLRFVKG-QFIEFQ--------ESTIGAAFFSQTLAVNDATVKFEIWDTAGQ-------E 70 (139)
Q Consensus 7 ~~~~~ki~i~G~~~~GKssli~~l~~~-~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~-------~ 70 (139)
+...++|+++|++|+|||||++.|.+. .++... .++.............+....+++||++|. +
T Consensus 15 ~~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e 94 (301)
T 2qnr_A 15 KGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRD 94 (301)
T ss_dssp ---CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC----------
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHH
Confidence 355789999999999999999998875 332221 111111111111222344578999999998 4
Q ss_pred cccccch-------hhhcC-------------CCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCC
Q 032487 71 RYHSLAP-------MYYRG-------------AAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDA 130 (139)
Q Consensus 71 ~~~~~~~-------~~~~~-------------~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~ 130 (139)
.+..+.. .++.. +++++++.+.. ..+++... ...+... ....|+++|+||+|+...
T Consensus 95 ~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt-~~~Ld~~~--~~~l~~l-~~~~~iilV~~K~Dl~~~ 170 (301)
T 2qnr_A 95 CFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF-GHGLKPLD--VAFMKAI-HNKVNIVPVIAKADTLTL 170 (301)
T ss_dssp -CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSS-SSSCCHHH--HHHHHHH-TTTSCEEEEECCGGGSCH
T ss_pred HHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCc-ccCCCHHH--HHHHHHH-HhcCCEEEEEEeCCCCCH
Confidence 4444433 22221 23344443322 11233322 1233333 246789999999999765
Q ss_pred c
Q 032487 131 R 131 (139)
Q Consensus 131 ~ 131 (139)
+
T Consensus 171 ~ 171 (301)
T 2qnr_A 171 K 171 (301)
T ss_dssp H
T ss_pred H
Confidence 4
No 195
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.47 E-value=4.5e-13 Score=102.18 Aligned_cols=119 Identities=19% Similarity=0.151 Sum_probs=80.2
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHhCC--------CCcc--c------ccceeeEEEEE--EEEEC-----CcEEEEEEE
Q 032487 8 NINAKLVLLGDVGAGKSSLVLRFVKGQ--------FIEF--Q------ESTIGAAFFSQ--TLAVN-----DATVKFEIW 64 (139)
Q Consensus 8 ~~~~ki~i~G~~~~GKssli~~l~~~~--------~~~~--~------~~~~~~~~~~~--~~~~~-----~~~~~~~i~ 64 (139)
.+.-+|+|+|+..+|||||..+|+... .... + ..--|.+..+. .+.+. ...+.++++
T Consensus 11 ~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlI 90 (709)
T 4fn5_A 11 NRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVI 90 (709)
T ss_dssp GGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEE
T ss_pred HHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEE
Confidence 566789999999999999999987321 0000 0 00111122222 22222 135889999
Q ss_pred eCCCcccccccchhhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCC
Q 032487 65 DTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDA 130 (139)
Q Consensus 65 d~~g~~~~~~~~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~ 130 (139)
||||+.+|..--...++-+|++++|+|+.+.-.......|... ... ++|.+++.||+|....
T Consensus 91 DTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a-~~~---~lp~i~~iNKiDr~~a 152 (709)
T 4fn5_A 91 DTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQA-NKY---GVPRIVYVNKMDRQGA 152 (709)
T ss_dssp CCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHH-HHH---TCCEEEEEECSSSTTC
T ss_pred eCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHH-HHc---CCCeEEEEccccccCc
Confidence 9999999988878889999999999999987655544444333 333 5889999999998654
No 196
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.44 E-value=2.5e-13 Score=95.95 Aligned_cols=85 Identities=19% Similarity=0.074 Sum_probs=54.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCc---------------EEEEEEEeCCCccccc-
Q 032487 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDA---------------TVKFEIWDTAGQERYH- 73 (139)
Q Consensus 10 ~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~d~~g~~~~~- 73 (139)
.++|+++|.+|+|||||+|+|.+........+..........+.+++. ...+++||+||...+.
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~ 81 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS 81 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCccccc
Confidence 368999999999999999999987643222221111111122333332 1479999999987543
Q ss_pred ---ccc---hhhhcCCCEEEEEEECCC
Q 032487 74 ---SLA---PMYYRGAAAAIIVYDITN 94 (139)
Q Consensus 74 ---~~~---~~~~~~~~~~i~v~~~~~ 94 (139)
.+. ..+++.+|++++|+|+.+
T Consensus 82 ~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 82 KGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred ccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 222 234789999999999985
No 197
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.42 E-value=2.1e-14 Score=99.52 Aligned_cols=99 Identities=17% Similarity=0.117 Sum_probs=79.5
Q ss_pred HHHHHHHhCCCC-cccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccchhhhcCCCEEEEEEECCCHH-HHHHHH
Q 032487 25 SLVLRFVKGQFI-EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQA-SFERAK 102 (139)
Q Consensus 25 sli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~~~~~~~-s~~~~~ 102 (139)
+++.++..+.+. ..+.+|.|..+. ..+..++ ++++||+ ++.+..+++.+++++|++++|||++++. +++.+.
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~~~~~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~ 105 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVE-YTPDETG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIID 105 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEE-EECCCSS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHH
T ss_pred cEEEEEEcccccccCCCCCCccEEE-EEEcCCC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHH
Confidence 567777777777 677888885443 3332222 6899999 8999999999999999999999999987 788899
Q ss_pred HHHHHHHHhCCCCCeEEEEEeCCCCcCCcC
Q 032487 103 KWVQELQAQGNPNMVMALAGNKADLLDARK 132 (139)
Q Consensus 103 ~~~~~~~~~~~~~~p~ivv~~k~D~~~~~~ 132 (139)
.|+..+.. .+.|+++|+||+|+.+.++
T Consensus 106 ~~l~~~~~---~~~piilv~NK~DL~~~~~ 132 (301)
T 1u0l_A 106 KFLVLAEK---NELETVMVINKMDLYDEDD 132 (301)
T ss_dssp HHHHHHHH---TTCEEEEEECCGGGCCHHH
T ss_pred HHHHHHHH---CCCCEEEEEeHHHcCCchh
Confidence 99988765 3689999999999976544
No 198
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.42 E-value=1.8e-13 Score=97.62 Aligned_cols=90 Identities=12% Similarity=0.025 Sum_probs=50.7
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCc---------------EEEEEEEeCCCcccc
Q 032487 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDA---------------TVKFEIWDTAGQERY 72 (139)
Q Consensus 8 ~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~d~~g~~~~ 72 (139)
....++.++|.+|+|||||+|+|.+........++.+.......+.+.+. ...+++||+||....
T Consensus 20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~ 99 (396)
T 2ohf_A 20 GTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKG 99 (396)
T ss_dssp SSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC----
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccc
Confidence 34679999999999999999999987653333333332233334444332 235999999998754
Q ss_pred cc-------cchhhhcCCCEEEEEEECCCHHH
Q 032487 73 HS-------LAPMYYRGAAAAIIVYDITNQAS 97 (139)
Q Consensus 73 ~~-------~~~~~~~~~~~~i~v~~~~~~~s 97 (139)
.. .+..+++.+|++++|+|+.+..+
T Consensus 100 as~~~glg~~~l~~ir~aD~Il~VvD~~~~~~ 131 (396)
T 2ohf_A 100 AHNGQGLGNAFLSHISACDGIFHLTRAFEDDD 131 (396)
T ss_dssp -------CCHHHHHHHTSSSEEEEEEC-----
T ss_pred cchhhHHHHHHHHHHHhcCeEEEEEecCCCcc
Confidence 43 33456789999999999876433
No 199
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.37 E-value=5.6e-14 Score=106.00 Aligned_cols=118 Identities=16% Similarity=0.138 Sum_probs=82.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhC--CCCc------c--cc------cceeeEEEEEEEEECCcEEEEEEEeCCCccccc
Q 032487 10 NAKLVLLGDVGAGKSSLVLRFVKG--QFIE------F--QE------STIGAAFFSQTLAVNDATVKFEIWDTAGQERYH 73 (139)
Q Consensus 10 ~~ki~i~G~~~~GKssli~~l~~~--~~~~------~--~~------~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~ 73 (139)
..||+|+|+.++|||||..+|+.. .... . .. .--|.+..+..+.+.+..+.++++||||+.+|.
T Consensus 2 IRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~ 81 (638)
T 3j25_A 2 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFL 81 (638)
T ss_dssp CCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTH
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHH
Confidence 457999999999999999998732 1110 0 00 001222333334444455789999999999998
Q ss_pred ccchhhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCCc
Q 032487 74 SLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131 (139)
Q Consensus 74 ~~~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~~ 131 (139)
.-....++-+|++++|+|+.+.-.......| +.+... ++|.+++.||+|....+
T Consensus 82 ~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~-~~a~~~---~lp~i~~INKmDr~~a~ 135 (638)
T 3j25_A 82 AEVYRSLSVLDGAILLISAKDGVQAQTRILF-HALRKM---GIPTIFFINKIDQNGID 135 (638)
T ss_dssp HHHHHHHTTCSEEECCEESSCTTCSHHHHHH-HHHHHH---TCSCEECCEECCSSSCC
T ss_pred HHHHHHHHHhCEEEEEEeCCCCCcHHHHHHH-HHHHHc---CCCeEEEEeccccccCC
Confidence 8888889999999999999987554443344 333433 57889999999986543
No 200
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.24 E-value=5e-11 Score=91.12 Aligned_cols=119 Identities=16% Similarity=0.176 Sum_probs=70.5
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHhCCCCccc-cccee-------------------------------------------
Q 032487 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQ-ESTIG------------------------------------------- 44 (139)
Q Consensus 9 ~~~ki~i~G~~~~GKssli~~l~~~~~~~~~-~~~~~------------------------------------------- 44 (139)
...+|+++|..++||||++|+|.+..+.+.. ..+..
T Consensus 50 ~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~ 129 (772)
T 3zvr_A 50 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 129 (772)
T ss_dssp CCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhc
Confidence 4569999999999999999999997762211 00000
Q ss_pred -----eE--EEEEEEEECCcEEEEEEEeCCCcccc-------------cccchhhh-cCCCEEEEEEECCCHHHHHHHHH
Q 032487 45 -----AA--FFSQTLAVNDATVKFEIWDTAGQERY-------------HSLAPMYY-RGAAAAIIVYDITNQASFERAKK 103 (139)
Q Consensus 45 -----~~--~~~~~~~~~~~~~~~~i~d~~g~~~~-------------~~~~~~~~-~~~~~~i~v~~~~~~~s~~~~~~ 103 (139)
+. .....+...+ ..++.++||||.... ......++ ..+|++++|+|++....-.....
T Consensus 130 g~~~~is~~~i~l~I~~P~-~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ 208 (772)
T 3zvr_A 130 GTNKGISPVPINLRVYSPH-VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 208 (772)
T ss_dssp CSTTCCCSCCEEEEEEETT-CCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHH
T ss_pred CCCCcccccceEEEEecCC-CCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHH
Confidence 00 0000111111 135789999996431 11112233 56899999999986432211212
Q ss_pred HHHHHHHhCCCCCeEEEEEeCCCCcCCc
Q 032487 104 WVQELQAQGNPNMVMALAGNKADLLDAR 131 (139)
Q Consensus 104 ~~~~~~~~~~~~~p~ivv~~k~D~~~~~ 131 (139)
++..+ ...+.|+++|+||+|+.+..
T Consensus 209 ll~~L---~~~g~pvIlVlNKiDlv~~~ 233 (772)
T 3zvr_A 209 IAKEV---DPQGQRTIGVITKLDLMDEG 233 (772)
T ss_dssp HHHHH---CTTCSSEEEEEECTTSSCTT
T ss_pred HHHHH---HhcCCCEEEEEeCcccCCcc
Confidence 33323 34578999999999987643
No 201
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.22 E-value=3e-12 Score=90.54 Aligned_cols=62 Identities=15% Similarity=0.065 Sum_probs=42.1
Q ss_pred EEEEEEEeCCCcccccccchhhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCC
Q 032487 58 TVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDA 130 (139)
Q Consensus 58 ~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~ 130 (139)
.+.+.+|||||... .....+..+|++++|+|....+.+..++. .....|.++|+||+|+.+.
T Consensus 171 ~~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~~--------~~~~~p~ivVlNK~Dl~~~ 232 (355)
T 3p32_A 171 GFDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIKK--------GVLELADIVVVNKADGEHH 232 (355)
T ss_dssp TCCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCCT--------TSGGGCSEEEEECCCGGGH
T ss_pred CCCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHHH--------hHhhcCCEEEEECCCCcCh
Confidence 36789999999532 22334588999999999876544322221 0123589999999998643
No 202
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.21 E-value=3.2e-11 Score=85.59 Aligned_cols=78 Identities=21% Similarity=0.220 Sum_probs=53.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCc------ccccceeeEEEEEEEEECC-------------------cEEEEEEEe
Q 032487 11 AKLVLLGDVGAGKSSLVLRFVKGQFIE------FQESTIGAAFFSQTLAVND-------------------ATVKFEIWD 65 (139)
Q Consensus 11 ~ki~i~G~~~~GKssli~~l~~~~~~~------~~~~~~~~~~~~~~~~~~~-------------------~~~~~~i~d 65 (139)
++++++|.+|+|||||+|+|.+..... +..++.+. . .+.+ ....+.+||
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~----~--~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvD 75 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGV----V--PLEDERLYALQRTFAKGERVPPVVPTHVEFVD 75 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEE----E--ECCCHHHHHHHHHHCBTTBCCCEECCEEEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceee----E--ecChHHHHHHHHHhcccccccccCCceEEEEE
Confidence 689999999999999999999754211 11223332 1 2211 235799999
Q ss_pred CCCcccccc----cc---hhhhcCCCEEEEEEECCC
Q 032487 66 TAGQERYHS----LA---PMYYRGAAAAIIVYDITN 94 (139)
Q Consensus 66 ~~g~~~~~~----~~---~~~~~~~~~~i~v~~~~~ 94 (139)
+||...... +. ...++.+|++++|+|+.+
T Consensus 76 tpGl~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 76 IAGLVKGAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCSCCCCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred CCCccccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 999865431 21 234789999999999975
No 203
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.20 E-value=7.7e-11 Score=83.18 Aligned_cols=60 Identities=12% Similarity=0.023 Sum_probs=36.2
Q ss_pred EEEEEEeCCCcccccccchhhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcC
Q 032487 59 VKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLD 129 (139)
Q Consensus 59 ~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~ 129 (139)
+.+.++||+|.... .......+|++++|+|..++.....++. .+ ...|.++|+||+|+.+
T Consensus 167 ~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i-----l~~~~ivVlNK~Dl~~ 226 (349)
T 2www_A 167 YDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKR---GI-----IEMADLVAVTKSDGDL 226 (349)
T ss_dssp CSEEEEECCCC--C---HHHHHTTCSEEEEEECCC--------------------CCSCSEEEECCCSGGG
T ss_pred CCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHH---HH-----HhcCCEEEEeeecCCC
Confidence 57899999995321 2334678999999999887543222211 11 2457899999999864
No 204
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.19 E-value=9e-12 Score=82.22 Aligned_cols=111 Identities=14% Similarity=0.165 Sum_probs=61.7
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEE--------------EEEEEEE----------------CCcE
Q 032487 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--------------FSQTLAV----------------NDAT 58 (139)
Q Consensus 9 ~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~--------------~~~~~~~----------------~~~~ 58 (139)
...+++++|.+|+|||||+++|...............++ ....+.. ....
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD 108 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence 356899999999999999999986521110000000000 0011111 1123
Q ss_pred EEEEEEeCCCcccccccchhhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCC
Q 032487 59 VKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDA 130 (139)
Q Consensus 59 ~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~ 130 (139)
..+.+|||+|+... ...+....+.+++|+|+.+... ....+... ...|.++|+||+|+.+.
T Consensus 109 ~d~iiidt~G~~~~---~~~~~~~~~~~i~vvd~~~~~~--~~~~~~~~------~~~~~iiv~NK~Dl~~~ 169 (221)
T 2wsm_A 109 CDLLLIENVGNLIC---PVDFDLGENYRVVMVSVTEGDD--VVEKHPEI------FRVADLIVINKVALAEA 169 (221)
T ss_dssp CSEEEEEEEEBSSG---GGGCCCSCSEEEEEEEGGGCTT--HHHHCHHH------HHTCSEEEEECGGGHHH
T ss_pred CCEEEEeCCCCCCC---CchhccccCcEEEEEeCCCcch--hhhhhhhh------hhcCCEEEEecccCCcc
Confidence 56889999985110 0111124678999999876432 11111111 13678999999998653
No 205
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.11 E-value=1e-13 Score=91.90 Aligned_cols=29 Identities=17% Similarity=0.331 Sum_probs=24.7
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHhCCCCc
Q 032487 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIE 37 (139)
Q Consensus 9 ~~~ki~i~G~~~~GKssli~~l~~~~~~~ 37 (139)
...+|+++|.+|+|||||+++|....+..
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~ 65 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDK 65 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccC
Confidence 46899999999999999999999765433
No 206
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.07 E-value=3.5e-11 Score=84.64 Aligned_cols=62 Identities=18% Similarity=0.053 Sum_probs=38.8
Q ss_pred EEEEEEEeCCCcccccccchhhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCC
Q 032487 58 TVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDA 130 (139)
Q Consensus 58 ~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~ 130 (139)
.+.+.+|||||...... .....+|++++|+|......+..++. .. ...|.++|+||+|+.+.
T Consensus 148 ~~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~~~l~~---~~-----~~~p~ivv~NK~Dl~~~ 209 (341)
T 2p67_A 148 GYDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIKK---GL-----MEVADLIVINKDDGDNH 209 (341)
T ss_dssp TCSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCCCH---HH-----HHHCSEEEECCCCTTCH
T ss_pred CCCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHHHHHHHH---hh-----hcccCEEEEECCCCCCh
Confidence 36799999999654332 24688999999999876543221111 01 13578999999998754
No 207
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.06 E-value=3.8e-10 Score=80.62 Aligned_cols=87 Identities=18% Similarity=0.098 Sum_probs=57.3
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHhCCC-CcccccceeeEEEEEEEEECCc---------------EEEEEEEeCCCccc
Q 032487 8 NINAKLVLLGDVGAGKSSLVLRFVKGQF-IEFQESTIGAAFFSQTLAVNDA---------------TVKFEIWDTAGQER 71 (139)
Q Consensus 8 ~~~~ki~i~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~d~~g~~~ 71 (139)
....++.++|++|+|||||+|.|.+... .....++.........+.+.+. ...+.+||+||...
T Consensus 18 ~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~ 97 (392)
T 1ni3_A 18 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK 97 (392)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccccc
Confidence 3467899999999999999999998664 3223333222223333444431 14689999999643
Q ss_pred c-------cccchhhhcCCCEEEEEEECCC
Q 032487 72 Y-------HSLAPMYYRGAAAAIIVYDITN 94 (139)
Q Consensus 72 ~-------~~~~~~~~~~~~~~i~v~~~~~ 94 (139)
. .......++.+|+++.++|+.+
T Consensus 98 ~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 98 GASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 2 1122345688999999999763
No 208
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.03 E-value=9.8e-10 Score=74.19 Aligned_cols=70 Identities=16% Similarity=0.102 Sum_probs=41.4
Q ss_pred EEEEEEeCCCcccccccch------hhhcCCCEEEEEEECCC---HHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcC
Q 032487 59 VKFEIWDTAGQERYHSLAP------MYYRGAAAAIIVYDITN---QASFERAKKWVQELQAQGNPNMVMALAGNKADLLD 129 (139)
Q Consensus 59 ~~~~i~d~~g~~~~~~~~~------~~~~~~~~~i~v~~~~~---~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~ 129 (139)
+.+.+|||||......... ..+.. +++++++|... ...+.....+...... ....|+++|+||+|+..
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~--~~~~p~~iv~NK~D~~~ 185 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDL--RLGATTIPALNKVDLLS 185 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHH--HHTSCEEEEECCGGGCC
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhc--ccCCCeEEEEecccccc
Confidence 5799999999876543221 13455 78888887653 2232222211111111 23578999999999876
Q ss_pred Cc
Q 032487 130 AR 131 (139)
Q Consensus 130 ~~ 131 (139)
..
T Consensus 186 ~~ 187 (262)
T 1yrb_A 186 EE 187 (262)
T ss_dssp HH
T ss_pred cc
Confidence 43
No 209
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.95 E-value=8.2e-11 Score=83.61 Aligned_cols=114 Identities=13% Similarity=0.159 Sum_probs=66.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhC-----CCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcccccccc----h---
Q 032487 10 NAKLVLLGDVGAGKSSLVLRFVKG-----QFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLA----P--- 77 (139)
Q Consensus 10 ~~ki~i~G~~~~GKssli~~l~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~----~--- 77 (139)
..+++++|.+|+|||||+|+|.+. .... .....+++........+.. +.++||||........ .
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~-~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l 237 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVIT-TSYFPGTTLDMIEIPLESG---ATLYDTPGIINHHQMAHFVDARDL 237 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCE-EEECTTSSCEEEEEECSTT---CEEEECCSCCCCSSGGGGSCTTTH
T ss_pred cCcEEEEcCCCCchHHHHHHHHhhccCCcccee-ecCCCCeEEeeEEEEeCCC---eEEEeCCCcCcHHHHHHHHhHHHH
Confidence 357999999999999999999975 1111 1122223333344444432 7899999964322111 1
Q ss_pred hhh---cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCCc
Q 032487 78 MYY---RGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131 (139)
Q Consensus 78 ~~~---~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~~ 131 (139)
..+ ...+.++++++......+..+.. +......+.|+++++||.|.....
T Consensus 238 ~~~~~~~~i~~~~~~l~~~~~~~~g~l~~----l~~l~~~~~~~~~v~~k~d~~~~~ 290 (369)
T 3ec1_A 238 KIITPKREIHPRVYQLNEGQTLFFGGLAR----LDYIKGGRRSFVCYMANELTVHRT 290 (369)
T ss_dssp HHHSCSSCCCCEEEEECTTEEEEETTTEE----EEEEESSSEEEEEEECTTSCEEEE
T ss_pred HHHhcccccCceEEEEcCCceEEECCEEE----EEEccCCCceEEEEecCCcccccc
Confidence 112 56788898888743211100100 111223568999999999986543
No 210
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.92 E-value=2.1e-10 Score=81.50 Aligned_cols=114 Identities=11% Similarity=0.121 Sum_probs=65.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCCCC-----cccccceeeEEEEEEEEECCcEEEEEEEeCCCccccccc----chhh-
Q 032487 10 NAKLVLLGDVGAGKSSLVLRFVKGQFI-----EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSL----APMY- 79 (139)
Q Consensus 10 ~~ki~i~G~~~~GKssli~~l~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~----~~~~- 79 (139)
..+++++|.+|+|||||+|+|.+.... .......+++........+.. +.++||||....... ....
T Consensus 160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l 236 (368)
T 3h2y_A 160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEE---SSLYDTPGIINHHQMAHYVGKQSL 236 (368)
T ss_dssp TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSS---CEEEECCCBCCTTSGGGGSCHHHH
T ss_pred cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCC---eEEEeCCCcCcHHHHHHHhhHHHH
Confidence 357999999999999999999975311 112223333333444444332 789999997433211 1111
Q ss_pred -----hcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCC
Q 032487 80 -----YRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDA 130 (139)
Q Consensus 80 -----~~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~ 130 (139)
....+..+++++......+..+.. +........|+++++||.|....
T Consensus 237 ~~~~~~~~i~~~~~~l~~~~~~~~g~l~~----~d~l~~~~~~~~~v~nk~d~~~~ 288 (368)
T 3h2y_A 237 KLITPTKEIKPMVFQLNEEQTLFFSGLAR----FDYVSGGRRAFTCHFSNRLTIHR 288 (368)
T ss_dssp HHHSCSSCCCCEEEEECTTEEEEETTTEE----EEEEESSSEEEEEEECTTSCEEE
T ss_pred HHhccccccCceEEEEcCCCEEEEcceEE----EEEecCCCceEEEEecCcccccc
Confidence 245678888887642211100000 11122346899999999998654
No 211
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.85 E-value=9.1e-09 Score=70.18 Aligned_cols=115 Identities=16% Similarity=0.177 Sum_probs=59.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCCCCcccc-cceeeE----EEEEEEEE----CCcEEEEEEEeCCCccccc---ccc-
Q 032487 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQE-STIGAA----FFSQTLAV----NDATVKFEIWDTAGQERYH---SLA- 76 (139)
Q Consensus 10 ~~ki~i~G~~~~GKssli~~l~~~~~~~~~~-~~~~~~----~~~~~~~~----~~~~~~~~i~d~~g~~~~~---~~~- 76 (139)
.++++++|++|+|||||++.|.+...+.... ...|.. .....+.+ .+....++++|++|..... ..+
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~ 81 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE 81 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence 5789999999999999999999754322110 000000 00011111 1222368999998742110 000
Q ss_pred ------------------------hhhhcCCCEEEEEEECCC-H-HHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCC
Q 032487 77 ------------------------PMYYRGAAAAIIVYDITN-Q-ASFERAKKWVQELQAQGNPNMVMALAGNKADLLDA 130 (139)
Q Consensus 77 ------------------------~~~~~~~~~~i~v~~~~~-~-~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~ 130 (139)
...+..++++++++|... + ...+ ...+..+. .. .++++|.+|.|....
T Consensus 82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD--~~~l~~L~---~~-~~vI~Vi~K~D~lt~ 155 (270)
T 3sop_A 82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLD--LEFMKHLS---KV-VNIIPVIAKADTMTL 155 (270)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHH--HHHHHHHH---TT-SEEEEEETTGGGSCH
T ss_pred HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHH--HHHHHHHH---hc-CcEEEEEeccccCCH
Confidence 001223578888888542 1 1221 23333333 23 889999999997654
No 212
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.83 E-value=3.3e-09 Score=74.52 Aligned_cols=61 Identities=16% Similarity=0.052 Sum_probs=35.9
Q ss_pred EEEEEEEeCCCcccccccchhhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcC
Q 032487 58 TVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLD 129 (139)
Q Consensus 58 ~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~ 129 (139)
.+.+.++||+|..... ......+|.+++++|....+....++.. +. ..|.+++.||+|+..
T Consensus 147 ~~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i~~~---i~-----~~~~ivvlNK~Dl~~ 207 (337)
T 2qm8_A 147 GFDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKKG---IF-----ELADMIAVNKADDGD 207 (337)
T ss_dssp TCCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CCTT---HH-----HHCSEEEEECCSTTC
T ss_pred CCCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHHHHH---Hh-----ccccEEEEEchhccC
Confidence 3678999999964321 2235789999999997654332211111 11 134577779999643
No 213
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.81 E-value=2.5e-08 Score=71.88 Aligned_cols=60 Identities=23% Similarity=0.357 Sum_probs=34.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCCCCccccc--ceeeEEEEEEEEE--CCcEEEEEEEeCCCc
Q 032487 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQES--TIGAAFFSQTLAV--NDATVKFEIWDTAGQ 69 (139)
Q Consensus 10 ~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~--~~~~~~~~~~~~~--~~~~~~~~i~d~~g~ 69 (139)
.++++|+|++|+|||||++.|.+..+...... ..+.......+.. .+....++++|++|.
T Consensus 42 i~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~ 105 (427)
T 2qag_B 42 CFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGF 105 (427)
T ss_dssp EEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECC
T ss_pred eeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhh
Confidence 45799999999999999999998753221110 1111111111111 222347899999875
No 214
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.81 E-value=5e-09 Score=71.88 Aligned_cols=59 Identities=24% Similarity=0.320 Sum_probs=36.6
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCcc
Q 032487 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQE 70 (139)
Q Consensus 8 ~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~ 70 (139)
...++++++|.+|+|||||+|+|.+..... .....+++.....+..+. .+.++||||..
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~-~~~~~g~T~~~~~~~~~~---~~~l~DtpG~~ 176 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAKKNIAK-TGDRPGITTSQQWVKVGK---ELELLDTPGIL 176 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSCCC-------------CCEEETT---TEEEEECCCCC
T ss_pred CCCceEEEEecCCCchHHHHHHHhcCceee-cCCCCCeeeeeEEEEeCC---CEEEEECcCcC
Confidence 456899999999999999999999876432 222333333333333322 47899999974
No 215
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.75 E-value=2.9e-09 Score=72.36 Aligned_cols=57 Identities=19% Similarity=0.219 Sum_probs=35.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCccc
Q 032487 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71 (139)
Q Consensus 11 ~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~ 71 (139)
++++++|.+|+|||||+|+|.+..... ..++.|.+.....+..+ ..+.+|||||...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~-~~~~~g~T~~~~~~~~~---~~~~l~DtpG~~~ 156 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASS-VGAQPGITKGIQWFSLE---NGVKILDTPGILY 156 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEEECT---TSCEEESSCEECC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccc-cCCCCCCccceEEEEeC---CCEEEEECCCccc
Confidence 589999999999999999999876533 22333433322222222 2478999999753
No 216
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.70 E-value=1.9e-08 Score=74.00 Aligned_cols=116 Identities=12% Similarity=0.147 Sum_probs=63.4
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHH------hCCCCcc----ccc-----------ceeeEEEEEEEE-------------
Q 032487 8 NINAKLVLLGDVGAGKSSLVLRFV------KGQFIEF----QES-----------TIGAAFFSQTLA------------- 53 (139)
Q Consensus 8 ~~~~ki~i~G~~~~GKssli~~l~------~~~~~~~----~~~-----------~~~~~~~~~~~~------------- 53 (139)
.....|+++|.+|+||||+++.|. +.+..-. ..+ ..+.+++.....
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~ 178 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK 178 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence 346689999999999999999998 3321100 000 001111111000
Q ss_pred ECCcEEEEEEEeCCCcccccc-cchh-----hhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeE-EEEEeCCC
Q 032487 54 VNDATVKFEIWDTAGQERYHS-LAPM-----YYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVM-ALAGNKAD 126 (139)
Q Consensus 54 ~~~~~~~~~i~d~~g~~~~~~-~~~~-----~~~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~-ivv~~k~D 126 (139)
.....+.+.++||||...... +... ....+|.+++|+|+...... ......+.. .+|+ .+|.||.|
T Consensus 179 ~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~---~~~a~~~~~----~~~i~gvVlNK~D 251 (504)
T 2j37_W 179 FKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQAC---EAQAKAFKD----KVDVASVIVTKLD 251 (504)
T ss_dssp HHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTH---HHHHHHHHH----HHCCCCEEEECTT
T ss_pred HHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccH---HHHHHHHHh----hcCceEEEEeCCc
Confidence 000236799999999753211 1110 12378999999998774321 112222222 1464 88899999
Q ss_pred CcCC
Q 032487 127 LLDA 130 (139)
Q Consensus 127 ~~~~ 130 (139)
....
T Consensus 252 ~~~~ 255 (504)
T 2j37_W 252 GHAK 255 (504)
T ss_dssp SCCC
T ss_pred cccc
Confidence 8643
No 217
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.63 E-value=8.9e-08 Score=66.28 Aligned_cols=60 Identities=18% Similarity=0.088 Sum_probs=50.9
Q ss_pred cccccccchhhhcCCCEEEEEEECCCHH-HHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCCc
Q 032487 69 QERYHSLAPMYYRGAAAAIIVYDITNQA-SFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131 (139)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~i~v~~~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~~ 131 (139)
++.+..+.+.++.++|.+++|+|++++. ++..+.+|+..+.. .+.|+++|+||+|+.+.+
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~---~~~~~ilV~NK~DL~~~~ 126 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY---FKVEPVIVFNKIDLLNEE 126 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH---TTCEEEEEECCGGGCCHH
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh---CCCCEEEEEEcccCCCcc
Confidence 4667777778899999999999999986 88888999987765 468999999999997654
No 218
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=98.55 E-value=1.7e-08 Score=66.09 Aligned_cols=64 Identities=5% Similarity=-0.055 Sum_probs=40.4
Q ss_pred CCcccccccchhhhcCCCEEEEEEECCCHHHHHHHHHH---HHHHHHhC-CCCCeEEEEEeCC-CCcCC
Q 032487 67 AGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKW---VQELQAQG-NPNMVMALAGNKA-DLLDA 130 (139)
Q Consensus 67 ~g~~~~~~~~~~~~~~~~~~i~v~~~~~~~s~~~~~~~---~~~~~~~~-~~~~p~ivv~~k~-D~~~~ 130 (139)
+|++..+..|..++.++|++|+|+|.+|++.++.-.++ ...+.... ..+.|++|++||. |++.+
T Consensus 110 GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~A 178 (227)
T 3l82_B 110 GSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKR 178 (227)
T ss_dssp -------CCHHHHHHHCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCB
T ss_pred CcHHHHHHHHHHHhcCCCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCC
Confidence 37889999999999999999999999987544422222 22222221 2678999999995 77654
No 219
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.37 E-value=4.8e-07 Score=67.78 Aligned_cols=64 Identities=16% Similarity=0.142 Sum_probs=39.6
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHhCCCC-ccc----ccceeeEEEEEEEEECCcEEEEEEEeCCCccc
Q 032487 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFI-EFQ----ESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71 (139)
Q Consensus 7 ~~~~~ki~i~G~~~~GKssli~~l~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~ 71 (139)
......|+|+|.+|+|||||+|+|.+.... ... ..+.+...+..... ......+.++||||...
T Consensus 35 ~~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~-~~~~~~i~LiDTpGi~~ 103 (592)
T 1f5n_A 35 TQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHP-KKPGHILVLLDTEGLGD 103 (592)
T ss_dssp CSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECS-SSTTCEEEEEEECCBCC
T ss_pred cCCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccc-cCCCceEEEecCCCcCc
Confidence 345688999999999999999999987532 111 11222211111111 12235689999999753
No 220
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=98.35 E-value=3.1e-08 Score=72.39 Aligned_cols=102 Identities=15% Similarity=0.115 Sum_probs=59.0
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHhCCCCcccccceeeEEEEEEEEECCcEEEEEEEeCCCccc--ccccc--------h
Q 032487 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER--YHSLA--------P 77 (139)
Q Consensus 8 ~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~--~~~~~--------~ 77 (139)
....+|+++|.+|+||||+.++|...-... ..++...+.........+......+||..|.+. ....+ .
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~-~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~ 115 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLNFI-GVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVR 115 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHhcc-CCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 456789999999999999999987542111 111111100000000111113346789988732 22222 3
Q ss_pred hhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHh
Q 032487 78 MYYRGAAAAIIVYDITNQASFERAKKWVQELQAQ 111 (139)
Q Consensus 78 ~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~ 111 (139)
.++...++.++++|..+. +.+..+.|+..+...
T Consensus 116 ~~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~~ 148 (469)
T 1bif_A 116 KFLSEEGGHVAVFDATNT-TRERRAMIFNFGEQN 148 (469)
T ss_dssp HHHHTTCCSEEEEESCCC-SHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCEEEEeCCCC-CHHHHHHHHHHHHhc
Confidence 455567888999999987 455566777766654
No 221
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.34 E-value=4.5e-06 Score=60.11 Aligned_cols=110 Identities=15% Similarity=0.093 Sum_probs=58.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCCCCccccc-ceeeEEEE-EEEEECCcEEEEEEEeCCCcccccccchh-----hhcC
Q 032487 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQES-TIGAAFFS-QTLAVNDATVKFEIWDTAGQERYHSLAPM-----YYRG 82 (139)
Q Consensus 10 ~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~i~d~~g~~~~~~~~~~-----~~~~ 82 (139)
...++++|++|+|||||+|.+.+...+....- ..+..... ..+........+.+||++|.......... .+..
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~ 148 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYE 148 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGGG
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccchHHHHHHHHHHcCCCc
Confidence 44799999999999999999998433221111 11111000 00111111125789999985422111111 2333
Q ss_pred CCEEEEEEECC--CHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCC
Q 032487 83 AAAAIIVYDIT--NQASFERAKKWVQELQAQGNPNMVMALAGNKADL 127 (139)
Q Consensus 83 ~~~~i~v~~~~--~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~ 127 (139)
.+..++ ++.. .+..+ .+...+.. .+.|+++|.||.|+
T Consensus 149 ~~~~~~-lS~G~~~kqrv----~la~aL~~---~~~p~~lV~tkpdl 187 (413)
T 1tq4_A 149 YDFFII-ISATRFKKNDI----DIAKAISM---MKKEFYFVRTKVDS 187 (413)
T ss_dssp CSEEEE-EESSCCCHHHH----HHHHHHHH---TTCEEEEEECCHHH
T ss_pred cCCeEE-eCCCCccHHHH----HHHHHHHh---cCCCeEEEEecCcc
Confidence 455555 7776 32221 12222332 25799999999986
No 222
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=98.29 E-value=2.2e-07 Score=63.70 Aligned_cols=65 Identities=5% Similarity=-0.104 Sum_probs=45.6
Q ss_pred CCCcccccccchhhhcCCCEEEEEEECCCHHHHHH---HHHHHHHHHHhC-CCCCeEEEEEeC-CCCcCC
Q 032487 66 TAGQERYHSLAPMYYRGAAAAIIVYDITNQASFER---AKKWVQELQAQG-NPNMVMALAGNK-ADLLDA 130 (139)
Q Consensus 66 ~~g~~~~~~~~~~~~~~~~~~i~v~~~~~~~s~~~---~~~~~~~~~~~~-~~~~p~ivv~~k-~D~~~~ 130 (139)
.+||+..+..|..++.++|++|+|+|.+|++.++. +.++...+.... ..+.|++|++|| .|++.+
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~A 263 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKR 263 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCB
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCC
Confidence 45788999999999999999999999999765442 222222332221 367899999996 688655
No 223
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.25 E-value=4e-06 Score=63.18 Aligned_cols=23 Identities=26% Similarity=0.424 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKGQ 34 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~~ 34 (139)
.++|+|+.|||||||++.+.+..
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC
T ss_pred eEEEECCCCChHHHHHHHHhCCC
Confidence 49999999999999999999864
No 224
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.10 E-value=4.7e-06 Score=60.41 Aligned_cols=115 Identities=17% Similarity=0.137 Sum_probs=62.4
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHh------CCCC----cccc-----------cceeeEEEEEEEEEC------------
Q 032487 9 INAKLVLLGDVGAGKSSLVLRFVK------GQFI----EFQE-----------STIGAAFFSQTLAVN------------ 55 (139)
Q Consensus 9 ~~~ki~i~G~~~~GKssli~~l~~------~~~~----~~~~-----------~~~~~~~~~~~~~~~------------ 55 (139)
.+.-|+++|++|+||||++..|.. .+.. .... ...+.+.+......+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 467899999999999999988873 1110 0000 011221111100000
Q ss_pred -CcEEEEEEEeCCCcccccc-----cc-hhhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCc
Q 032487 56 -DATVKFEIWDTAGQERYHS-----LA-PMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLL 128 (139)
Q Consensus 56 -~~~~~~~i~d~~g~~~~~~-----~~-~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~ 128 (139)
...+.+.++||+|...... +. ......+|.+++|+|+...... ......+... -.+..+|.||.|..
T Consensus 179 ~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a---~~~a~~f~~~---~~i~gVIlTKlD~~ 252 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQA---YNQALAFKEA---TPIGSIIVTKLDGS 252 (443)
T ss_dssp HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGH---HHHHHHHHHS---CTTEEEEEECCSSC
T ss_pred HhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhH---HHHHHHHHhh---CCCeEEEEECCCCc
Confidence 0126789999999532211 10 0123457999999998764322 1222233322 23467889999976
Q ss_pred C
Q 032487 129 D 129 (139)
Q Consensus 129 ~ 129 (139)
.
T Consensus 253 ~ 253 (443)
T 3dm5_A 253 A 253 (443)
T ss_dssp S
T ss_pred c
Confidence 4
No 225
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.09 E-value=4.7e-06 Score=60.39 Aligned_cols=113 Identities=17% Similarity=0.149 Sum_probs=61.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCC------CC--c-c-cc-----------cceeeEEEEEE--------E--E-E-CC
Q 032487 10 NAKLVLLGDVGAGKSSLVLRFVKGQ------FI--E-F-QE-----------STIGAAFFSQT--------L--A-V-ND 56 (139)
Q Consensus 10 ~~ki~i~G~~~~GKssli~~l~~~~------~~--~-~-~~-----------~~~~~~~~~~~--------~--~-~-~~ 56 (139)
...|+++|++|+||||+++.|...- .. . . .. ...+....... + . . ..
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~~ 178 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKF 178 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999887521 10 0 0 00 00000000000 0 0 0 01
Q ss_pred cEEEEEEEeCCCcccccc-cc-----hhhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCC-e-EEEEEeCCCCc
Q 032487 57 ATVKFEIWDTAGQERYHS-LA-----PMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNM-V-MALAGNKADLL 128 (139)
Q Consensus 57 ~~~~~~i~d~~g~~~~~~-~~-----~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~-p-~ivv~~k~D~~ 128 (139)
..+.+.++||+|...... .. ...+..+|.+++|+|+..... .......+. ... | ..+|.||.|..
T Consensus 179 ~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~~----~~~~~i~gvVlnK~D~~ 251 (432)
T 2v3c_C 179 KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ---AGIQAKAFK----EAVGEIGSIIVTKLDGS 251 (432)
T ss_dssp SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG---HHHHHHHHH----TTSCSCEEEEEECSSSC
T ss_pred hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH---HHHHHHHHh----hcccCCeEEEEeCCCCc
Confidence 246789999999643211 10 011236899999999865432 112222222 234 5 88999999975
Q ss_pred C
Q 032487 129 D 129 (139)
Q Consensus 129 ~ 129 (139)
.
T Consensus 252 ~ 252 (432)
T 2v3c_C 252 A 252 (432)
T ss_dssp S
T ss_pred c
Confidence 4
No 226
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.79 E-value=1.7e-05 Score=50.72 Aligned_cols=22 Identities=36% Similarity=0.761 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKG 33 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~ 33 (139)
+++++|++|+|||||++.+.+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999998864
No 227
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.73 E-value=1.7e-05 Score=57.37 Aligned_cols=115 Identities=15% Similarity=0.158 Sum_probs=60.8
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHhC------CCC----cccc-----------cceeeEEEEEEE-------------EE
Q 032487 9 INAKLVLLGDVGAGKSSLVLRFVKG------QFI----EFQE-----------STIGAAFFSQTL-------------AV 54 (139)
Q Consensus 9 ~~~ki~i~G~~~~GKssli~~l~~~------~~~----~~~~-----------~~~~~~~~~~~~-------------~~ 54 (139)
...-++++|++|+||||++..|... +.. ..+. ...+...+.... ..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 3567899999999999999887731 110 0000 011111111000 00
Q ss_pred CCcEEEEEEEeCCCccc--ccc-----cch-hhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCC
Q 032487 55 NDATVKFEIWDTAGQER--YHS-----LAP-MYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKAD 126 (139)
Q Consensus 55 ~~~~~~~~i~d~~g~~~--~~~-----~~~-~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D 126 (139)
....+.+.++||+|... ... +.. .....++.+++|+|+...... ......+... -.+..+|.||.|
T Consensus 176 ~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a---~~~a~~f~~~---~~~~gVIlTKlD 249 (433)
T 3kl4_A 176 VKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKA---YDLASRFHQA---SPIGSVIITKMD 249 (433)
T ss_dssp TTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGG---HHHHHHHHHH---CSSEEEEEECGG
T ss_pred HhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHH---HHHHHHHhcc---cCCcEEEEeccc
Confidence 11246788999999533 111 100 112356899999998764332 1222333322 134678899999
Q ss_pred CcC
Q 032487 127 LLD 129 (139)
Q Consensus 127 ~~~ 129 (139)
...
T Consensus 250 ~~a 252 (433)
T 3kl4_A 250 GTA 252 (433)
T ss_dssp GCS
T ss_pred ccc
Confidence 753
No 228
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.73 E-value=3.9e-05 Score=55.79 Aligned_cols=26 Identities=19% Similarity=0.152 Sum_probs=22.1
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHhC
Q 032487 8 NINAKLVLLGDVGAGKSSLVLRFVKG 33 (139)
Q Consensus 8 ~~~~ki~i~G~~~~GKssli~~l~~~ 33 (139)
.+..-|.|+|++++|||+|+|.|++.
T Consensus 65 ~~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 65 KEVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp SBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHhhh
Confidence 34556899999999999999999863
No 229
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.68 E-value=0.00012 Score=50.57 Aligned_cols=65 Identities=17% Similarity=0.083 Sum_probs=38.7
Q ss_pred EEEEEEEeCCCccc--ccc-cch-----hhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEeCCCCc
Q 032487 58 TVKFEIWDTAGQER--YHS-LAP-----MYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMV-MALAGNKADLL 128 (139)
Q Consensus 58 ~~~~~i~d~~g~~~--~~~-~~~-----~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~~k~D~~ 128 (139)
.+.+.++||||... ... ... .....+|.+++|+|...... .......+.. ..| ..+|.||.|..
T Consensus 180 ~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~~~----~~~i~gvVlnk~D~~ 252 (297)
T 1j8m_F 180 KMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQK---AYDLASKFNQ----ASKIGTIIITKMDGT 252 (297)
T ss_dssp TCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGG---HHHHHHHHHH----TCTTEEEEEECGGGC
T ss_pred CCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchHH---HHHHHHHHHh----hCCCCEEEEeCCCCC
Confidence 36789999999765 211 110 12456899999999864321 1122222222 244 67889999975
Q ss_pred C
Q 032487 129 D 129 (139)
Q Consensus 129 ~ 129 (139)
.
T Consensus 253 ~ 253 (297)
T 1j8m_F 253 A 253 (297)
T ss_dssp T
T ss_pred c
Confidence 3
No 230
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.68 E-value=2.8e-05 Score=49.55 Aligned_cols=22 Identities=32% Similarity=0.567 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKG 33 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~ 33 (139)
-++|+|++|||||||++.|.+.
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999999863
No 231
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=97.64 E-value=2.5e-05 Score=55.47 Aligned_cols=57 Identities=23% Similarity=0.309 Sum_probs=44.3
Q ss_pred CcccccccchhhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCC
Q 032487 68 GQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDA 130 (139)
Q Consensus 68 g~~~~~~~~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~ 130 (139)
..+.|......+.+.++++++|+|+.++. ..|...+.... .+.|+++|+||+|+.+.
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~-~~~p~ilV~NK~DL~~~ 111 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFV-GNNKVLLVGNKADLIPK 111 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHS-SSSCEEEEEECGGGSCT
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHh-CCCcEEEEEEChhcCCc
Confidence 45778888888888999999999999863 34555565542 37899999999999654
No 232
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.64 E-value=3.4e-05 Score=49.99 Aligned_cols=22 Identities=41% Similarity=0.656 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 032487 11 AKLVLLGDVGAGKSSLVLRFVK 32 (139)
Q Consensus 11 ~ki~i~G~~~~GKssli~~l~~ 32 (139)
-.++|+|++|+|||||++.+.+
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3689999999999999999886
No 233
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.62 E-value=8e-06 Score=52.66 Aligned_cols=21 Identities=33% Similarity=0.632 Sum_probs=19.3
Q ss_pred EEEEcCCCCcHHHHHHHHHhC
Q 032487 13 LVLLGDVGAGKSSLVLRFVKG 33 (139)
Q Consensus 13 i~i~G~~~~GKssli~~l~~~ 33 (139)
|+|+||+|+||+||++.|+..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 899999999999999999854
No 234
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.59 E-value=4e-05 Score=48.98 Aligned_cols=23 Identities=30% Similarity=0.431 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 032487 11 AKLVLLGDVGAGKSSLVLRFVKG 33 (139)
Q Consensus 11 ~ki~i~G~~~~GKssli~~l~~~ 33 (139)
-.++++|++||||||+++.|.+.
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 45899999999999999999875
No 235
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.58 E-value=4.6e-05 Score=49.21 Aligned_cols=22 Identities=41% Similarity=0.587 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKG 33 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~ 33 (139)
-++++|++||||||+++.|.+.
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 5889999999999999999874
No 236
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.56 E-value=8e-05 Score=46.98 Aligned_cols=23 Identities=30% Similarity=0.479 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHh
Q 032487 10 NAKLVLLGDVGAGKSSLVLRFVK 32 (139)
Q Consensus 10 ~~ki~i~G~~~~GKssli~~l~~ 32 (139)
.-.++++|++||||||+++.|.+
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 45699999999999999998864
No 237
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.56 E-value=5e-05 Score=48.62 Aligned_cols=21 Identities=33% Similarity=0.632 Sum_probs=19.1
Q ss_pred EEEEcCCCCcHHHHHHHHHhC
Q 032487 13 LVLLGDVGAGKSSLVLRFVKG 33 (139)
Q Consensus 13 i~i~G~~~~GKssli~~l~~~ 33 (139)
++++|++||||||+++.|.+.
T Consensus 4 i~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 789999999999999999864
No 238
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.56 E-value=5.1e-05 Score=49.39 Aligned_cols=22 Identities=32% Similarity=0.386 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKG 33 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~ 33 (139)
-++|+|++|||||||++.+.+.
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4789999999999999998864
No 239
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.52 E-value=7.8e-05 Score=48.53 Aligned_cols=25 Identities=28% Similarity=0.307 Sum_probs=21.7
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHh
Q 032487 8 NINAKLVLLGDVGAGKSSLVLRFVK 32 (139)
Q Consensus 8 ~~~~ki~i~G~~~~GKssli~~l~~ 32 (139)
.....+.|+|++|||||||++.|.+
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4566899999999999999998775
No 240
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.51 E-value=6.4e-05 Score=49.60 Aligned_cols=24 Identities=38% Similarity=0.512 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCC
Q 032487 11 AKLVLLGDVGAGKSSLVLRFVKGQ 34 (139)
Q Consensus 11 ~ki~i~G~~~~GKssli~~l~~~~ 34 (139)
--++|+|++|||||||++.+.+..
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 358899999999999999998743
No 241
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.50 E-value=6.7e-05 Score=49.35 Aligned_cols=22 Identities=32% Similarity=0.650 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKG 33 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~ 33 (139)
.++|+|++|||||||++.+.+.
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5889999999999999999874
No 242
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.47 E-value=8e-05 Score=48.39 Aligned_cols=24 Identities=29% Similarity=0.527 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhC
Q 032487 10 NAKLVLLGDVGAGKSSLVLRFVKG 33 (139)
Q Consensus 10 ~~ki~i~G~~~~GKssli~~l~~~ 33 (139)
.--++|+|++|+|||||++.|.+.
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEECcCCCCHHHHHHHHHhh
Confidence 345889999999999999999853
No 243
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.46 E-value=8.7e-05 Score=46.51 Aligned_cols=23 Identities=39% Similarity=0.661 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKGQ 34 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~~ 34 (139)
-++++|+.|+|||||++.+.+.-
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 58899999999999999998754
No 244
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.46 E-value=8.8e-05 Score=48.35 Aligned_cols=24 Identities=29% Similarity=0.396 Sum_probs=21.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhC
Q 032487 10 NAKLVLLGDVGAGKSSLVLRFVKG 33 (139)
Q Consensus 10 ~~ki~i~G~~~~GKssli~~l~~~ 33 (139)
.--++++|++|+||||+++.|...
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhh
Confidence 345899999999999999999865
No 245
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.45 E-value=9e-05 Score=46.57 Aligned_cols=23 Identities=30% Similarity=0.585 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 032487 11 AKLVLLGDVGAGKSSLVLRFVKG 33 (139)
Q Consensus 11 ~ki~i~G~~~~GKssli~~l~~~ 33 (139)
..|+++|++||||||+.+.|.+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 36999999999999999998763
No 246
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.44 E-value=7.5e-05 Score=49.78 Aligned_cols=23 Identities=22% Similarity=0.289 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKGQ 34 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~~ 34 (139)
-++|+|+.|||||||++.+.+-.
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 47899999999999999998753
No 247
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.43 E-value=3.1e-05 Score=53.66 Aligned_cols=24 Identities=33% Similarity=0.407 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCC
Q 032487 11 AKLVLLGDVGAGKSSLVLRFVKGQ 34 (139)
Q Consensus 11 ~ki~i~G~~~~GKssli~~l~~~~ 34 (139)
-.++++|++|+|||||+|.|.+..
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC--
T ss_pred CEEEEECCCCCCHHHHHHHhcccc
Confidence 368999999999999999998754
No 248
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.42 E-value=7.7e-05 Score=47.14 Aligned_cols=18 Identities=39% Similarity=0.739 Sum_probs=16.4
Q ss_pred EEEEEcCCCCcHHHHHHH
Q 032487 12 KLVLLGDVGAGKSSLVLR 29 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~ 29 (139)
-++++|++|||||||++.
T Consensus 11 i~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp EEEEECCTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999999994
No 249
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.42 E-value=9.8e-05 Score=47.18 Aligned_cols=21 Identities=29% Similarity=0.504 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 032487 12 KLVLLGDVGAGKSSLVLRFVK 32 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~ 32 (139)
-++++|++|+||||+++.+.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999975
No 250
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.42 E-value=0.0001 Score=47.84 Aligned_cols=23 Identities=30% Similarity=0.575 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 032487 11 AKLVLLGDVGAGKSSLVLRFVKG 33 (139)
Q Consensus 11 ~ki~i~G~~~~GKssli~~l~~~ 33 (139)
.-|+++|++||||||+++.|...
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 45899999999999999998753
No 251
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.42 E-value=0.00013 Score=46.02 Aligned_cols=22 Identities=27% Similarity=0.511 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 032487 11 AKLVLLGDVGAGKSSLVLRFVK 32 (139)
Q Consensus 11 ~ki~i~G~~~~GKssli~~l~~ 32 (139)
.-|++.|++||||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4589999999999999999986
No 252
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.40 E-value=0.00011 Score=46.05 Aligned_cols=22 Identities=23% Similarity=0.229 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKG 33 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~ 33 (139)
.|+|.|++||||||+.+.|...
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998743
No 253
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.40 E-value=0.00011 Score=47.50 Aligned_cols=23 Identities=22% Similarity=0.497 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHh
Q 032487 10 NAKLVLLGDVGAGKSSLVLRFVK 32 (139)
Q Consensus 10 ~~ki~i~G~~~~GKssli~~l~~ 32 (139)
.--++|+|++||||||+++.|.+
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999999875
No 254
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.40 E-value=0.00011 Score=47.46 Aligned_cols=24 Identities=29% Similarity=0.455 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCC
Q 032487 11 AKLVLLGDVGAGKSSLVLRFVKGQ 34 (139)
Q Consensus 11 ~ki~i~G~~~~GKssli~~l~~~~ 34 (139)
..++++|++||||||+++.|.+.-
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 468999999999999999998753
No 255
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.39 E-value=0.00011 Score=45.98 Aligned_cols=19 Identities=26% Similarity=0.455 Sum_probs=18.0
Q ss_pred EEEEEcCCCCcHHHHHHHH
Q 032487 12 KLVLLGDVGAGKSSLVLRF 30 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l 30 (139)
-|++.|++||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5899999999999999999
No 256
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.37 E-value=0.00013 Score=47.34 Aligned_cols=25 Identities=16% Similarity=0.279 Sum_probs=21.5
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHhC
Q 032487 9 INAKLVLLGDVGAGKSSLVLRFVKG 33 (139)
Q Consensus 9 ~~~ki~i~G~~~~GKssli~~l~~~ 33 (139)
....+.|+|+.||||||+++.|.+.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 4457999999999999999988763
No 257
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.36 E-value=0.00012 Score=48.91 Aligned_cols=23 Identities=39% Similarity=0.385 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKGQ 34 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~~ 34 (139)
.++++|++|+|||||++.+.+-.
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999754
No 258
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.36 E-value=9.6e-05 Score=48.87 Aligned_cols=23 Identities=26% Similarity=0.380 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKGQ 34 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~~ 34 (139)
-++++|+.|||||||++.+.+-.
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998753
No 259
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.36 E-value=0.00018 Score=46.38 Aligned_cols=26 Identities=27% Similarity=0.606 Sum_probs=22.2
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHh
Q 032487 7 KNINAKLVLLGDVGAGKSSLVLRFVK 32 (139)
Q Consensus 7 ~~~~~ki~i~G~~~~GKssli~~l~~ 32 (139)
......|+|.|.+||||||+.+.|..
T Consensus 17 ~~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 17 RGSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34566899999999999999998874
No 260
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.35 E-value=0.00013 Score=47.01 Aligned_cols=22 Identities=27% Similarity=0.475 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKG 33 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~ 33 (139)
.++++|++|+||||+++.+.+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 5789999999999999998864
No 261
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=97.35 E-value=4.5e-05 Score=54.17 Aligned_cols=57 Identities=23% Similarity=0.302 Sum_probs=42.7
Q ss_pred CcccccccchhhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCC
Q 032487 68 GQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDA 130 (139)
Q Consensus 68 g~~~~~~~~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~ 130 (139)
.++.|..+....+.+++++++|+|+.++.+ .|...+.... .+.|+++|+||+|+.+.
T Consensus 57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l-~~~piilV~NK~DLl~~ 113 (369)
T 3ec1_A 57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFA-ADNPILLVGNKADLLPR 113 (369)
T ss_dssp --CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHC-TTSCEEEEEECGGGSCT
T ss_pred CHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHh-CCCCEEEEEEChhcCCC
Confidence 467888888888889999999999998763 3444444432 36899999999999754
No 262
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.34 E-value=0.00015 Score=48.43 Aligned_cols=22 Identities=32% Similarity=0.561 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHH
Q 032487 10 NAKLVLLGDVGAGKSSLVLRFV 31 (139)
Q Consensus 10 ~~ki~i~G~~~~GKssli~~l~ 31 (139)
.-.++|+|++||||||+++.|.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999999998
No 263
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=97.34 E-value=0.00011 Score=50.36 Aligned_cols=58 Identities=17% Similarity=-0.007 Sum_probs=39.8
Q ss_pred eCCCcc-cccccchhhhcCCCEEEEEEECCCHHHHH--HHHHHHHHHHHhCCCCCeEEEEEeCCCCcCC
Q 032487 65 DTAGQE-RYHSLAPMYYRGAAAAIIVYDITNQASFE--RAKKWVQELQAQGNPNMVMALAGNKADLLDA 130 (139)
Q Consensus 65 d~~g~~-~~~~~~~~~~~~~~~~i~v~~~~~~~s~~--~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~ 130 (139)
..||+. .........+..+|+++.|+|+.++.+.. .+..|+ ...|.++|+||+|+.+.
T Consensus 5 w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--------~~kp~ilVlNK~DL~~~ 65 (282)
T 1puj_A 5 WFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--------KNKPRIMLLNKADKADA 65 (282)
T ss_dssp ----CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--------SSSCEEEEEECGGGSCH
T ss_pred CCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--------CCCCEEEEEECcccCCH
Confidence 467764 34444455688999999999999987653 344442 46899999999999764
No 264
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.33 E-value=0.00012 Score=49.57 Aligned_cols=23 Identities=22% Similarity=0.366 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKGQ 34 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~~ 34 (139)
-++|+|+.|||||||++.+.+-.
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998753
No 265
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.33 E-value=0.00013 Score=51.66 Aligned_cols=24 Identities=33% Similarity=0.379 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCC
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKGQF 35 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~~~ 35 (139)
.++++|++|+|||||+|.|.+...
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCccHHHHHHHHhcccc
Confidence 589999999999999999997543
No 266
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.33 E-value=0.00013 Score=46.25 Aligned_cols=24 Identities=29% Similarity=0.534 Sum_probs=20.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhC
Q 032487 10 NAKLVLLGDVGAGKSSLVLRFVKG 33 (139)
Q Consensus 10 ~~ki~i~G~~~~GKssli~~l~~~ 33 (139)
.-.++++|++|+|||+|++.+.+.
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 456899999999999999998764
No 267
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.33 E-value=0.00016 Score=45.66 Aligned_cols=22 Identities=32% Similarity=0.428 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 032487 11 AKLVLLGDVGAGKSSLVLRFVK 32 (139)
Q Consensus 11 ~ki~i~G~~~~GKssli~~l~~ 32 (139)
.-|++.|++||||||+.+.|..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999886
No 268
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.32 E-value=0.00017 Score=46.56 Aligned_cols=22 Identities=36% Similarity=0.658 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 032487 11 AKLVLLGDVGAGKSSLVLRFVK 32 (139)
Q Consensus 11 ~ki~i~G~~~~GKssli~~l~~ 32 (139)
-.|+++|++||||||+.+.|..
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4799999999999999998874
No 269
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.32 E-value=0.00012 Score=49.89 Aligned_cols=23 Identities=35% Similarity=0.421 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKGQ 34 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~~ 34 (139)
-++|+|+.|||||||++.+.+-.
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999998753
No 270
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.32 E-value=0.00013 Score=47.93 Aligned_cols=23 Identities=22% Similarity=0.267 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKGQ 34 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~~ 34 (139)
.++++|+.|+|||||++.+.+-.
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998753
No 271
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.31 E-value=0.00013 Score=48.66 Aligned_cols=23 Identities=35% Similarity=0.585 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKGQ 34 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~~ 34 (139)
.++|+|+.|||||||++.+.+-.
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999998753
No 272
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.31 E-value=0.00016 Score=46.72 Aligned_cols=23 Identities=30% Similarity=0.472 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHh
Q 032487 10 NAKLVLLGDVGAGKSSLVLRFVK 32 (139)
Q Consensus 10 ~~ki~i~G~~~~GKssli~~l~~ 32 (139)
...|+|+|++||||||+.+.|..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34699999999999999998864
No 273
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.30 E-value=0.00023 Score=45.22 Aligned_cols=23 Identities=30% Similarity=0.583 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHh
Q 032487 10 NAKLVLLGDVGAGKSSLVLRFVK 32 (139)
Q Consensus 10 ~~ki~i~G~~~~GKssli~~l~~ 32 (139)
...|+++|++||||||+.+.|..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998874
No 274
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.29 E-value=0.0002 Score=45.66 Aligned_cols=23 Identities=22% Similarity=0.406 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHh
Q 032487 10 NAKLVLLGDVGAGKSSLVLRFVK 32 (139)
Q Consensus 10 ~~ki~i~G~~~~GKssli~~l~~ 32 (139)
..-|++.|++||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45699999999999999998864
No 275
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=97.29 E-value=0.00014 Score=49.10 Aligned_cols=23 Identities=26% Similarity=0.356 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKGQ 34 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~~ 34 (139)
-++++|+.|+|||||++.+.+-.
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998754
No 276
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=97.29 E-value=0.00014 Score=47.67 Aligned_cols=22 Identities=27% Similarity=0.348 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKG 33 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~ 33 (139)
.++++|+.|+|||||++.+.+.
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999876
No 277
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.29 E-value=0.00019 Score=46.75 Aligned_cols=21 Identities=33% Similarity=0.601 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 032487 12 KLVLLGDVGAGKSSLVLRFVK 32 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~ 32 (139)
+|+|+|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998854
No 278
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.28 E-value=0.00018 Score=49.82 Aligned_cols=23 Identities=26% Similarity=0.332 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 032487 11 AKLVLLGDVGAGKSSLVLRFVKG 33 (139)
Q Consensus 11 ~ki~i~G~~~~GKssli~~l~~~ 33 (139)
-.++|+|++|+|||||++.|.+-
T Consensus 127 e~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 127 NCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhhh
Confidence 36899999999999999998853
No 279
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.28 E-value=0.00032 Score=42.97 Aligned_cols=24 Identities=21% Similarity=0.362 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhC
Q 032487 10 NAKLVLLGDVGAGKSSLVLRFVKG 33 (139)
Q Consensus 10 ~~ki~i~G~~~~GKssli~~l~~~ 33 (139)
...+++.|++|+|||++.+.+...
T Consensus 27 ~~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 27 TSPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp SSCEEEEEETTCCHHHHHGGGCCT
T ss_pred CCcEEEECCCCccHHHHHHHHHHh
Confidence 346999999999999998877653
No 280
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=97.28 E-value=0.00015 Score=48.07 Aligned_cols=23 Identities=35% Similarity=0.554 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKGQ 34 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~~ 34 (139)
.++++|+.|+|||||++.+.+--
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998753
No 281
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.27 E-value=0.00029 Score=46.42 Aligned_cols=23 Identities=35% Similarity=0.647 Sum_probs=18.7
Q ss_pred eeE-EEEEcCCCCcHHHHHHHHHh
Q 032487 10 NAK-LVLLGDVGAGKSSLVLRFVK 32 (139)
Q Consensus 10 ~~k-i~i~G~~~~GKssli~~l~~ 32 (139)
..| |+|+|+|||||+|....|..
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 344 56789999999999988774
No 282
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=97.27 E-value=0.00015 Score=49.12 Aligned_cols=23 Identities=26% Similarity=0.416 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKGQ 34 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~~ 34 (139)
.++++|+.|+|||||++.+.+-.
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Confidence 47899999999999999998753
No 283
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.27 E-value=0.00017 Score=48.77 Aligned_cols=23 Identities=22% Similarity=0.468 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 032487 11 AKLVLLGDVGAGKSSLVLRFVKG 33 (139)
Q Consensus 11 ~ki~i~G~~~~GKssli~~l~~~ 33 (139)
-.++++|+.||||||+++.+.+.
T Consensus 26 ~~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp EEEEEECSTTCSHHHHHHHHHHH
T ss_pred CEEEEECCCCccHHHHHHHHHHh
Confidence 35899999999999999998863
No 284
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.27 E-value=0.00015 Score=48.67 Aligned_cols=23 Identities=26% Similarity=0.348 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKGQ 34 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~~ 34 (139)
.++|+|+.|||||||++.+.+-.
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999998753
No 285
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=97.27 E-value=0.00017 Score=48.42 Aligned_cols=22 Identities=36% Similarity=0.407 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKG 33 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~ 33 (139)
.++|+|+.|+|||||++.+.+-
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999985
No 286
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.27 E-value=0.00026 Score=45.83 Aligned_cols=24 Identities=25% Similarity=0.182 Sum_probs=21.1
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHh
Q 032487 9 INAKLVLLGDVGAGKSSLVLRFVK 32 (139)
Q Consensus 9 ~~~ki~i~G~~~~GKssli~~l~~ 32 (139)
....|+|.|.+||||||+.+.|..
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHH
Confidence 456799999999999999998874
No 287
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.27 E-value=0.00022 Score=45.38 Aligned_cols=22 Identities=18% Similarity=0.226 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 032487 11 AKLVLLGDVGAGKSSLVLRFVK 32 (139)
Q Consensus 11 ~ki~i~G~~~~GKssli~~l~~ 32 (139)
..|+|.|++||||||+.+.|..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5699999999999999998864
No 288
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.27 E-value=0.00031 Score=44.72 Aligned_cols=26 Identities=23% Similarity=0.344 Sum_probs=22.0
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHh
Q 032487 7 KNINAKLVLLGDVGAGKSSLVLRFVK 32 (139)
Q Consensus 7 ~~~~~ki~i~G~~~~GKssli~~l~~ 32 (139)
.+....|+++|.+||||||+.+.+..
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 34566799999999999999998864
No 289
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.27 E-value=0.0002 Score=46.66 Aligned_cols=21 Identities=48% Similarity=0.621 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 032487 12 KLVLLGDVGAGKSSLVLRFVK 32 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~ 32 (139)
+|+|+|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999864
No 290
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=97.27 E-value=0.00017 Score=48.21 Aligned_cols=23 Identities=22% Similarity=0.314 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKGQ 34 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~~ 34 (139)
.++|+|+.|+|||||++.+.+-.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998753
No 291
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.27 E-value=0.00026 Score=45.17 Aligned_cols=25 Identities=20% Similarity=0.377 Sum_probs=21.7
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHhC
Q 032487 9 INAKLVLLGDVGAGKSSLVLRFVKG 33 (139)
Q Consensus 9 ~~~ki~i~G~~~~GKssli~~l~~~ 33 (139)
....|+++|.+||||||+.+.|...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3457999999999999999988764
No 292
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.27 E-value=0.00015 Score=49.26 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKGQ 34 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~~ 34 (139)
.+.++|++|||||||++.+.+-.
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 47899999999999999999753
No 293
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.26 E-value=0.00016 Score=48.35 Aligned_cols=23 Identities=26% Similarity=0.354 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKGQ 34 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~~ 34 (139)
.++++|+.|+|||||++.+.+-.
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998753
No 294
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=97.26 E-value=0.00018 Score=48.79 Aligned_cols=22 Identities=27% Similarity=0.434 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKG 33 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~ 33 (139)
.++|+|+.|+|||||++.+.+-
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999985
No 295
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.26 E-value=0.00023 Score=46.66 Aligned_cols=22 Identities=27% Similarity=0.456 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 032487 11 AKLVLLGDVGAGKSSLVLRFVK 32 (139)
Q Consensus 11 ~ki~i~G~~~~GKssli~~l~~ 32 (139)
..|.|+|++||||||+.+.|.+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998875
No 296
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.26 E-value=0.00025 Score=45.21 Aligned_cols=23 Identities=35% Similarity=0.537 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHh
Q 032487 10 NAKLVLLGDVGAGKSSLVLRFVK 32 (139)
Q Consensus 10 ~~ki~i~G~~~~GKssli~~l~~ 32 (139)
...|++.|.+||||||+.+.|..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999988764
No 297
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.26 E-value=0.00018 Score=45.76 Aligned_cols=21 Identities=24% Similarity=0.366 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 032487 12 KLVLLGDVGAGKSSLVLRFVK 32 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~ 32 (139)
.|+|.|++||||||+.+.|..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998874
No 298
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=97.25 E-value=0.00017 Score=48.54 Aligned_cols=23 Identities=43% Similarity=0.556 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKGQ 34 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~~ 34 (139)
.++++|+.|+|||||++.+.+-.
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999998753
No 299
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.25 E-value=0.00017 Score=48.72 Aligned_cols=23 Identities=26% Similarity=0.271 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKGQ 34 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~~ 34 (139)
.++|+|+.|+|||||++.+.+-.
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998753
No 300
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.25 E-value=0.00019 Score=47.55 Aligned_cols=20 Identities=30% Similarity=0.760 Sum_probs=18.4
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 032487 12 KLVLLGDVGAGKSSLVLRFV 31 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~ 31 (139)
-++++|++|+|||||++.+.
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 47899999999999999887
No 301
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.25 E-value=0.00018 Score=47.12 Aligned_cols=22 Identities=23% Similarity=0.395 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKG 33 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~ 33 (139)
-++|+|++|+|||||++.+.+.
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999873
No 302
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.24 E-value=0.00023 Score=45.69 Aligned_cols=21 Identities=43% Similarity=0.756 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 032487 12 KLVLLGDVGAGKSSLVLRFVK 32 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~ 32 (139)
.|+|.|.+||||||+.+.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 589999999999999999875
No 303
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.24 E-value=0.00027 Score=47.18 Aligned_cols=24 Identities=29% Similarity=0.570 Sum_probs=21.5
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHh
Q 032487 9 INAKLVLLGDVGAGKSSLVLRFVK 32 (139)
Q Consensus 9 ~~~ki~i~G~~~~GKssli~~l~~ 32 (139)
....|+|+|++||||||+.+.|..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 567899999999999999999874
No 304
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.24 E-value=0.00024 Score=46.48 Aligned_cols=23 Identities=30% Similarity=0.563 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHh
Q 032487 10 NAKLVLLGDVGAGKSSLVLRFVK 32 (139)
Q Consensus 10 ~~ki~i~G~~~~GKssli~~l~~ 32 (139)
...|+++|.+||||||+.+.|..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999998864
No 305
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.24 E-value=0.00022 Score=46.06 Aligned_cols=22 Identities=32% Similarity=0.634 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 032487 11 AKLVLLGDVGAGKSSLVLRFVK 32 (139)
Q Consensus 11 ~ki~i~G~~~~GKssli~~l~~ 32 (139)
.+|+|+|.+||||||+.+.|.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3699999999999999999876
No 306
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.23 E-value=0.00028 Score=45.55 Aligned_cols=24 Identities=25% Similarity=0.314 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhC
Q 032487 10 NAKLVLLGDVGAGKSSLVLRFVKG 33 (139)
Q Consensus 10 ~~ki~i~G~~~~GKssli~~l~~~ 33 (139)
..-|+|+|++||||||+.+.|.+.
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 456899999999999999988753
No 307
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.23 E-value=0.00023 Score=46.57 Aligned_cols=25 Identities=28% Similarity=0.432 Sum_probs=21.5
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHh
Q 032487 8 NINAKLVLLGDVGAGKSSLVLRFVK 32 (139)
Q Consensus 8 ~~~~ki~i~G~~~~GKssli~~l~~ 32 (139)
.+...|+++|.+||||||+.+.|..
T Consensus 3 ~~~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 3 SKKHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp GGCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999998864
No 308
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.23 E-value=0.00026 Score=44.97 Aligned_cols=23 Identities=35% Similarity=0.534 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHh
Q 032487 10 NAKLVLLGDVGAGKSSLVLRFVK 32 (139)
Q Consensus 10 ~~ki~i~G~~~~GKssli~~l~~ 32 (139)
...|+++|++||||||+.+.|..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999998864
No 309
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.22 E-value=0.0003 Score=45.48 Aligned_cols=23 Identities=26% Similarity=0.264 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHh
Q 032487 10 NAKLVLLGDVGAGKSSLVLRFVK 32 (139)
Q Consensus 10 ~~ki~i~G~~~~GKssli~~l~~ 32 (139)
...|++.|.+||||||+.+.|..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 45799999999999999999875
No 310
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=97.22 E-value=0.00018 Score=49.12 Aligned_cols=23 Identities=35% Similarity=0.426 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKGQ 34 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~~ 34 (139)
.++|+|+.|+|||||++.+.+-.
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999998754
No 311
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=97.22 E-value=0.00018 Score=48.93 Aligned_cols=23 Identities=26% Similarity=0.313 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKGQ 34 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~~ 34 (139)
.++|+|+.|+|||||++.+.+-.
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998753
No 312
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=97.22 E-value=0.00019 Score=48.57 Aligned_cols=22 Identities=27% Similarity=0.451 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKG 33 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~ 33 (139)
.++|+|+.|+|||||++.+.+-
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5889999999999999999875
No 313
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.21 E-value=0.00022 Score=48.54 Aligned_cols=21 Identities=29% Similarity=0.452 Sum_probs=19.6
Q ss_pred EEEEcCCCCcHHHHHHHHHhC
Q 032487 13 LVLLGDVGAGKSSLVLRFVKG 33 (139)
Q Consensus 13 i~i~G~~~~GKssli~~l~~~ 33 (139)
++++|++|+|||+|++.+.+.
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 999999999999999999863
No 314
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.21 E-value=0.00025 Score=45.11 Aligned_cols=23 Identities=22% Similarity=0.419 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 032487 11 AKLVLLGDVGAGKSSLVLRFVKG 33 (139)
Q Consensus 11 ~ki~i~G~~~~GKssli~~l~~~ 33 (139)
.-++++|++|+|||||++.+...
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Confidence 45889999999999999999864
No 315
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.21 E-value=0.00023 Score=49.09 Aligned_cols=24 Identities=33% Similarity=0.307 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCC
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKGQF 35 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~~~ 35 (139)
.++++|++|+|||||+|.+.+...
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~~~ 194 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPGLK 194 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTTCC
T ss_pred eEEEECCCCCcHHHHHHHhccccc
Confidence 578999999999999999997643
No 316
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=97.20 E-value=0.00021 Score=50.55 Aligned_cols=24 Identities=29% Similarity=0.430 Sum_probs=21.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhC
Q 032487 10 NAKLVLLGDVGAGKSSLVLRFVKG 33 (139)
Q Consensus 10 ~~ki~i~G~~~~GKssli~~l~~~ 33 (139)
.-+++|+|++|+|||||++.|.+.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999998864
No 317
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.20 E-value=0.00024 Score=44.76 Aligned_cols=21 Identities=38% Similarity=0.687 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 032487 12 KLVLLGDVGAGKSSLVLRFVK 32 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~ 32 (139)
+|+|+|++||||||+.+.|..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 699999999999999998864
No 318
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.20 E-value=0.00032 Score=45.09 Aligned_cols=27 Identities=19% Similarity=0.287 Sum_probs=22.9
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHhC
Q 032487 7 KNINAKLVLLGDVGAGKSSLVLRFVKG 33 (139)
Q Consensus 7 ~~~~~ki~i~G~~~~GKssli~~l~~~ 33 (139)
++....|+|.|.+||||||+.+.|...
T Consensus 5 ~~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 5 AKHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp -CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHC
Confidence 345678999999999999999998865
No 319
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=97.20 E-value=0.0002 Score=48.22 Aligned_cols=23 Identities=35% Similarity=0.475 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKGQ 34 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~~ 34 (139)
.++++|+.|+|||||++.+.+-.
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998754
No 320
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.19 E-value=0.00022 Score=46.73 Aligned_cols=24 Identities=17% Similarity=0.169 Sum_probs=20.7
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHh
Q 032487 9 INAKLVLLGDVGAGKSSLVLRFVK 32 (139)
Q Consensus 9 ~~~ki~i~G~~~~GKssli~~l~~ 32 (139)
....|+|+|++||||||+.+.|..
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999998864
No 321
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=97.19 E-value=0.00021 Score=48.51 Aligned_cols=23 Identities=30% Similarity=0.410 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKGQ 34 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~~ 34 (139)
.++++|+.|+|||||++.+.+-.
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999998753
No 322
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.18 E-value=0.00027 Score=46.55 Aligned_cols=24 Identities=25% Similarity=0.450 Sum_probs=20.5
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHh
Q 032487 9 INAKLVLLGDVGAGKSSLVLRFVK 32 (139)
Q Consensus 9 ~~~ki~i~G~~~~GKssli~~l~~ 32 (139)
+...|+|.|++||||||+.+.|..
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999998874
No 323
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.18 E-value=0.00031 Score=45.40 Aligned_cols=22 Identities=27% Similarity=0.492 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 032487 11 AKLVLLGDVGAGKSSLVLRFVK 32 (139)
Q Consensus 11 ~ki~i~G~~~~GKssli~~l~~ 32 (139)
..|.++|++||||||+.+.|.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999976
No 324
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.17 E-value=0.0003 Score=45.93 Aligned_cols=21 Identities=48% Similarity=0.675 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 032487 12 KLVLLGDVGAGKSSLVLRFVK 32 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~ 32 (139)
.|+++|+|||||+|....|..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999988874
No 325
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.17 E-value=0.00037 Score=44.28 Aligned_cols=23 Identities=26% Similarity=0.489 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHh
Q 032487 10 NAKLVLLGDVGAGKSSLVLRFVK 32 (139)
Q Consensus 10 ~~ki~i~G~~~~GKssli~~l~~ 32 (139)
...|++.|.+||||||+.+.|..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998864
No 326
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.17 E-value=0.00014 Score=47.97 Aligned_cols=22 Identities=32% Similarity=0.507 Sum_probs=14.8
Q ss_pred EEEEEcCCCCcHHHHHHHHH-hC
Q 032487 12 KLVLLGDVGAGKSSLVLRFV-KG 33 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~-~~ 33 (139)
-++|+|++||||||+++.|. +.
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp EEEEECSCC----CHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 48899999999999999998 54
No 327
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.16 E-value=0.0004 Score=44.94 Aligned_cols=26 Identities=19% Similarity=0.229 Sum_probs=22.4
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHhC
Q 032487 8 NINAKLVLLGDVGAGKSSLVLRFVKG 33 (139)
Q Consensus 8 ~~~~ki~i~G~~~~GKssli~~l~~~ 33 (139)
+....|.|+|++||||||+.+.|.+.
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 44567999999999999999999864
No 328
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.15 E-value=0.00038 Score=44.77 Aligned_cols=24 Identities=21% Similarity=0.339 Sum_probs=21.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhC
Q 032487 10 NAKLVLLGDVGAGKSSLVLRFVKG 33 (139)
Q Consensus 10 ~~ki~i~G~~~~GKssli~~l~~~ 33 (139)
...|++.|.+||||||+.+.|...
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 457999999999999999999864
No 329
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.15 E-value=0.00026 Score=48.85 Aligned_cols=22 Identities=41% Similarity=0.691 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKGQ 34 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~~ 34 (139)
-++++|++|+|||||+|.+. ..
T Consensus 167 i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 167 ICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp EEEEECSTTSSHHHHHHHHH-SC
T ss_pred EEEEECCCCCCHHHHHHHHH-Hh
Confidence 57899999999999999999 54
No 330
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.15 E-value=0.00029 Score=47.11 Aligned_cols=22 Identities=27% Similarity=0.453 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKG 33 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~ 33 (139)
.++++|++|+|||++++.+.+.
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3999999999999999999864
No 331
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.15 E-value=0.00037 Score=47.73 Aligned_cols=25 Identities=28% Similarity=0.405 Sum_probs=21.6
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHh
Q 032487 8 NINAKLVLLGDVGAGKSSLVLRFVK 32 (139)
Q Consensus 8 ~~~~ki~i~G~~~~GKssli~~l~~ 32 (139)
....-|++.|++||||||+.+.|..
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999999874
No 332
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=97.15 E-value=0.00028 Score=47.85 Aligned_cols=23 Identities=30% Similarity=0.508 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKGQ 34 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~~ 34 (139)
.++++|+.|+|||||++.+.+-.
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998864
No 333
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=97.14 E-value=0.00025 Score=50.20 Aligned_cols=23 Identities=26% Similarity=0.460 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKGQ 34 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~~ 34 (139)
-++++|++|||||||++.+.+-.
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 47899999999999999999864
No 334
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.14 E-value=0.0003 Score=45.87 Aligned_cols=21 Identities=29% Similarity=0.468 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 032487 12 KLVLLGDVGAGKSSLVLRFVK 32 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~ 32 (139)
+|++.|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998864
No 335
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.14 E-value=0.00036 Score=43.97 Aligned_cols=24 Identities=29% Similarity=0.567 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhC
Q 032487 10 NAKLVLLGDVGAGKSSLVLRFVKG 33 (139)
Q Consensus 10 ~~ki~i~G~~~~GKssli~~l~~~ 33 (139)
.-.+++.|++|+|||++++.+...
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999999988753
No 336
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.13 E-value=0.00056 Score=44.07 Aligned_cols=25 Identities=32% Similarity=0.517 Sum_probs=21.0
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHh
Q 032487 8 NINAKLVLLGDVGAGKSSLVLRFVK 32 (139)
Q Consensus 8 ~~~~ki~i~G~~~~GKssli~~l~~ 32 (139)
.....|+|.|.+||||||+.+.|..
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3445799999999999999998874
No 337
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.12 E-value=0.0011 Score=45.90 Aligned_cols=53 Identities=11% Similarity=0.165 Sum_probs=38.7
Q ss_pred cchhhhcCCCEEEEEEECCCHHH-HHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCC
Q 032487 75 LAPMYYRGAAAAIIVYDITNQAS-FERAKKWVQELQAQGNPNMVMALAGNKADLLDA 130 (139)
Q Consensus 75 ~~~~~~~~~~~~i~v~~~~~~~s-~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~ 130 (139)
+.+..+.++|.+++|+|+.++.. ...+.+++.... ..++|.++|.||+|+.+.
T Consensus 79 l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~---~~~~~~vivlnK~DL~~~ 132 (307)
T 1t9h_A 79 LIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVE---ANDIQPIICITKMDLIED 132 (307)
T ss_dssp ETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHH---TTTCEEEEEEECGGGCCC
T ss_pred hhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHH---HCCCCEEEEEECCccCch
Confidence 33446789999999999997644 444555554444 346888999999999765
No 338
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.12 E-value=0.00045 Score=47.95 Aligned_cols=26 Identities=19% Similarity=0.245 Sum_probs=22.2
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHh
Q 032487 7 KNINAKLVLLGDVGAGKSSLVLRFVK 32 (139)
Q Consensus 7 ~~~~~ki~i~G~~~~GKssli~~l~~ 32 (139)
.....-+.|+|++|||||||++.|.+
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHh
Confidence 34566799999999999999998875
No 339
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.11 E-value=0.00036 Score=44.54 Aligned_cols=23 Identities=22% Similarity=0.481 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHh
Q 032487 10 NAKLVLLGDVGAGKSSLVLRFVK 32 (139)
Q Consensus 10 ~~ki~i~G~~~~GKssli~~l~~ 32 (139)
...|++.|.+||||||+.+.|..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998864
No 340
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.11 E-value=0.00038 Score=46.73 Aligned_cols=25 Identities=28% Similarity=0.320 Sum_probs=21.7
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHh
Q 032487 8 NINAKLVLLGDVGAGKSSLVLRFVK 32 (139)
Q Consensus 8 ~~~~ki~i~G~~~~GKssli~~l~~ 32 (139)
.....|+++|++||||||+.+.|..
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4457899999999999999999875
No 341
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=97.11 E-value=0.00031 Score=49.62 Aligned_cols=23 Identities=26% Similarity=0.407 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKGQ 34 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~~ 34 (139)
-++++|++|||||||++.+.+-.
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999999764
No 342
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.09 E-value=0.00026 Score=43.82 Aligned_cols=22 Identities=36% Similarity=0.560 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKG 33 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~ 33 (139)
.++++|++|+|||+|++.+.+.
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999998864
No 343
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.09 E-value=0.00038 Score=44.04 Aligned_cols=23 Identities=26% Similarity=0.449 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHh
Q 032487 10 NAKLVLLGDVGAGKSSLVLRFVK 32 (139)
Q Consensus 10 ~~ki~i~G~~~~GKssli~~l~~ 32 (139)
...|+++|++|+||||+.+.|..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 45699999999999999998874
No 344
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=97.09 E-value=0.00033 Score=49.61 Aligned_cols=23 Identities=35% Similarity=0.481 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKGQ 34 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~~ 34 (139)
-++++|++|||||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 47899999999999999999864
No 345
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=97.09 E-value=0.00033 Score=49.57 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKGQ 34 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~~ 34 (139)
-++++|++|||||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHCCC
Confidence 47899999999999999999764
No 346
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=97.09 E-value=0.00034 Score=49.88 Aligned_cols=23 Identities=30% Similarity=0.442 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKGQ 34 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~~ 34 (139)
-++++|++|||||||++.+.+-.
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHcCC
Confidence 47899999999999999999864
No 347
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=97.08 E-value=0.00046 Score=46.02 Aligned_cols=23 Identities=17% Similarity=0.309 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHh
Q 032487 10 NAKLVLLGDVGAGKSSLVLRFVK 32 (139)
Q Consensus 10 ~~ki~i~G~~~~GKssli~~l~~ 32 (139)
..-|.|+|+.||||||+++.|.+
T Consensus 25 g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 45699999999999999998876
No 348
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.08 E-value=0.00035 Score=49.41 Aligned_cols=22 Identities=23% Similarity=0.421 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKG 33 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~ 33 (139)
.++|+|+.||||||+++.+.+.
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 6999999999999999998863
No 349
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.07 E-value=0.00046 Score=43.01 Aligned_cols=21 Identities=24% Similarity=0.404 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 032487 12 KLVLLGDVGAGKSSLVLRFVK 32 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~ 32 (139)
+|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998875
No 350
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=97.07 E-value=0.00042 Score=49.09 Aligned_cols=24 Identities=29% Similarity=0.415 Sum_probs=21.4
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHH
Q 032487 8 NINAKLVLLGDVGAGKSSLVLRFV 31 (139)
Q Consensus 8 ~~~~ki~i~G~~~~GKssli~~l~ 31 (139)
.+..||+++|.++||||||+.++.
T Consensus 31 ~~~~killlG~~~SGKST~~kq~~ 54 (362)
T 1zcb_A 31 ARLVKILLLGAGESGKSTFLKQMR 54 (362)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHH
T ss_pred cCccEEEEECCCCCcHHHHHHHHH
Confidence 457899999999999999998864
No 351
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.06 E-value=0.00029 Score=44.53 Aligned_cols=24 Identities=17% Similarity=0.257 Sum_probs=16.4
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHh
Q 032487 9 INAKLVLLGDVGAGKSSLVLRFVK 32 (139)
Q Consensus 9 ~~~ki~i~G~~~~GKssli~~l~~ 32 (139)
+...|++.|.+||||||+.+.|..
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999999874
No 352
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=97.06 E-value=0.00038 Score=49.50 Aligned_cols=23 Identities=35% Similarity=0.447 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKGQ 34 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~~ 34 (139)
-++++|++|||||||++.+.+-.
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 47899999999999999999754
No 353
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=97.06 E-value=0.00038 Score=49.34 Aligned_cols=23 Identities=30% Similarity=0.332 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKGQ 34 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~~ 34 (139)
-+.|+|++|||||||++.+.+-.
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHhcCC
Confidence 47899999999999999999754
No 354
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.06 E-value=0.00041 Score=46.65 Aligned_cols=21 Identities=14% Similarity=0.433 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 032487 12 KLVLLGDVGAGKSSLVLRFVK 32 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~ 32 (139)
-++|+|++||||||+.+.|..
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999999874
No 355
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=97.05 E-value=0.00037 Score=49.55 Aligned_cols=23 Identities=26% Similarity=0.426 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKGQ 34 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~~ 34 (139)
-++++|++|||||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCcHHHHHHHHHHcCC
Confidence 47899999999999999999864
No 356
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.05 E-value=0.00044 Score=44.78 Aligned_cols=23 Identities=39% Similarity=0.411 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHh
Q 032487 10 NAKLVLLGDVGAGKSSLVLRFVK 32 (139)
Q Consensus 10 ~~ki~i~G~~~~GKssli~~l~~ 32 (139)
...|+|.|.+||||||+.+.|..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998874
No 357
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=97.05 E-value=0.0003 Score=48.32 Aligned_cols=23 Identities=35% Similarity=0.554 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKGQ 34 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~~ 34 (139)
.++++|+.|+|||||++.+.+-.
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 57899999999999999998753
No 358
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.04 E-value=0.00019 Score=45.49 Aligned_cols=22 Identities=27% Similarity=0.511 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKG 33 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~ 33 (139)
.+.|+|++|||||||++.+.+.
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999998864
No 359
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.03 E-value=0.00042 Score=47.96 Aligned_cols=24 Identities=17% Similarity=0.403 Sum_probs=20.6
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHh
Q 032487 9 INAKLVLLGDVGAGKSSLVLRFVK 32 (139)
Q Consensus 9 ~~~ki~i~G~~~~GKssli~~l~~ 32 (139)
..--++++|++||||||+++.+.+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 345789999999999999999874
No 360
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.03 E-value=0.00055 Score=46.13 Aligned_cols=23 Identities=30% Similarity=0.414 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHh
Q 032487 10 NAKLVLLGDVGAGKSSLVLRFVK 32 (139)
Q Consensus 10 ~~ki~i~G~~~~GKssli~~l~~ 32 (139)
..-|++.|.+||||||+.+.|..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 34699999999999999998875
No 361
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=97.02 E-value=0.00026 Score=49.07 Aligned_cols=22 Identities=36% Similarity=0.564 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKG 33 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~ 33 (139)
.++|+|+.|+|||||++.+.+-
T Consensus 82 ~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTTS
T ss_pred EEEEECCCCchHHHHHHHHHcC
Confidence 6899999999999999998874
No 362
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.02 E-value=0.00045 Score=46.88 Aligned_cols=22 Identities=27% Similarity=0.453 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKG 33 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~ 33 (139)
.++++|++|+|||++++.+.+.
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcChHHHHHHHHHHH
Confidence 3999999999999999999864
No 363
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.02 E-value=0.00073 Score=46.41 Aligned_cols=26 Identities=19% Similarity=0.282 Sum_probs=21.7
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHh
Q 032487 7 KNINAKLVLLGDVGAGKSSLVLRFVK 32 (139)
Q Consensus 7 ~~~~~ki~i~G~~~~GKssli~~l~~ 32 (139)
.....-|.|.|++|||||||++.|..
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34567899999999999999987653
No 364
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.01 E-value=0.0004 Score=44.45 Aligned_cols=23 Identities=22% Similarity=0.485 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHh
Q 032487 10 NAKLVLLGDVGAGKSSLVLRFVK 32 (139)
Q Consensus 10 ~~ki~i~G~~~~GKssli~~l~~ 32 (139)
...|++.|.+||||||+.+.|..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998875
No 365
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=97.01 E-value=0.00054 Score=45.07 Aligned_cols=21 Identities=19% Similarity=0.352 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 032487 12 KLVLLGDVGAGKSSLVLRFVK 32 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~ 32 (139)
.|++.|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998864
No 366
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.01 E-value=0.00058 Score=45.15 Aligned_cols=24 Identities=38% Similarity=0.560 Sum_probs=20.9
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHh
Q 032487 9 INAKLVLLGDVGAGKSSLVLRFVK 32 (139)
Q Consensus 9 ~~~ki~i~G~~~~GKssli~~l~~ 32 (139)
....|+++|.+||||||+.+.|..
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999998874
No 367
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.00 E-value=0.0007 Score=47.20 Aligned_cols=25 Identities=20% Similarity=0.239 Sum_probs=21.4
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHh
Q 032487 8 NINAKLVLLGDVGAGKSSLVLRFVK 32 (139)
Q Consensus 8 ~~~~ki~i~G~~~~GKssli~~l~~ 32 (139)
..++=+.|+|++|||||||++.|.+
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4566799999999999999988764
No 368
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.00 E-value=0.00046 Score=48.19 Aligned_cols=22 Identities=27% Similarity=0.448 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKG 33 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~ 33 (139)
.++++|++|+||||+++.+.+.
T Consensus 53 ~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 53 HVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CEEEESSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 4899999999999999998864
No 369
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=96.99 E-value=0.0003 Score=49.54 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKGQ 34 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~~ 34 (139)
-++++|++|||||||++.+.+-.
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSS
T ss_pred EEEEECCCCccHHHHHHHHHcCC
Confidence 47899999999999999999764
No 370
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.99 E-value=0.0005 Score=44.92 Aligned_cols=21 Identities=33% Similarity=0.664 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 032487 12 KLVLLGDVGAGKSSLVLRFVK 32 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~ 32 (139)
-++++|++|+|||||+..+..
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999999884
No 371
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.99 E-value=0.0007 Score=43.77 Aligned_cols=25 Identities=20% Similarity=0.158 Sum_probs=21.2
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHh
Q 032487 8 NINAKLVLLGDVGAGKSSLVLRFVK 32 (139)
Q Consensus 8 ~~~~ki~i~G~~~~GKssli~~l~~ 32 (139)
....-+.|+|++||||||+++.|.+
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999998874
No 372
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.98 E-value=0.0005 Score=47.52 Aligned_cols=23 Identities=22% Similarity=0.449 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHh
Q 032487 10 NAKLVLLGDVGAGKSSLVLRFVK 32 (139)
Q Consensus 10 ~~ki~i~G~~~~GKssli~~l~~ 32 (139)
.--++++|++||||||+++.+.+
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 44689999999999999998875
No 373
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.98 E-value=0.00063 Score=45.52 Aligned_cols=24 Identities=21% Similarity=0.375 Sum_probs=20.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhC
Q 032487 10 NAKLVLLGDVGAGKSSLVLRFVKG 33 (139)
Q Consensus 10 ~~ki~i~G~~~~GKssli~~l~~~ 33 (139)
...+++.|++|+|||++++.+.+.
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 346999999999999999998863
No 374
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.97 E-value=0.00058 Score=42.74 Aligned_cols=21 Identities=14% Similarity=0.445 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 032487 12 KLVLLGDVGAGKSSLVLRFVK 32 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~ 32 (139)
.|++.|.+||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999998874
No 375
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.96 E-value=0.00057 Score=43.49 Aligned_cols=21 Identities=19% Similarity=0.344 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 032487 12 KLVLLGDVGAGKSSLVLRFVK 32 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~ 32 (139)
.|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999998875
No 376
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.96 E-value=0.00058 Score=43.30 Aligned_cols=21 Identities=48% Similarity=0.643 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 032487 12 KLVLLGDVGAGKSSLVLRFVK 32 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~ 32 (139)
.|+|+|.+||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999988864
No 377
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.96 E-value=0.00072 Score=46.75 Aligned_cols=25 Identities=24% Similarity=0.292 Sum_probs=21.5
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHh
Q 032487 8 NINAKLVLLGDVGAGKSSLVLRFVK 32 (139)
Q Consensus 8 ~~~~ki~i~G~~~~GKssli~~l~~ 32 (139)
....-+.|+|++|||||||++.|.+
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999998876
No 378
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.95 E-value=0.00058 Score=43.62 Aligned_cols=22 Identities=23% Similarity=0.261 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKG 33 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~ 33 (139)
-|++.|.+||||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999998753
No 379
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.95 E-value=0.00046 Score=43.39 Aligned_cols=24 Identities=33% Similarity=0.556 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhC
Q 032487 10 NAKLVLLGDVGAGKSSLVLRFVKG 33 (139)
Q Consensus 10 ~~ki~i~G~~~~GKssli~~l~~~ 33 (139)
.-.+++.|++|+|||++++.+...
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 446899999999999999988753
No 380
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.95 E-value=0.00052 Score=48.77 Aligned_cols=23 Identities=22% Similarity=0.468 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 032487 11 AKLVLLGDVGAGKSSLVLRFVKG 33 (139)
Q Consensus 11 ~ki~i~G~~~~GKssli~~l~~~ 33 (139)
-.++|+|++||||||+++.+.+.
T Consensus 137 ~~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp EEEEEECSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 35899999999999999998863
No 381
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.95 E-value=0.00064 Score=44.57 Aligned_cols=24 Identities=21% Similarity=0.321 Sum_probs=20.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhC
Q 032487 10 NAKLVLLGDVGAGKSSLVLRFVKG 33 (139)
Q Consensus 10 ~~ki~i~G~~~~GKssli~~l~~~ 33 (139)
.-.+++.|++|+|||++++.+...
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999988753
No 382
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.94 E-value=0.00056 Score=43.28 Aligned_cols=21 Identities=24% Similarity=0.306 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 032487 12 KLVLLGDVGAGKSSLVLRFVK 32 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~ 32 (139)
-.+|+|+.|+||||+++.+..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999864
No 383
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=96.94 E-value=0.00049 Score=49.24 Aligned_cols=22 Identities=41% Similarity=0.711 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKG 33 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~ 33 (139)
.++++|++|||||||++.+.+-
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCChHHHHHHHHhCC
Confidence 4789999999999999999874
No 384
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.93 E-value=0.00081 Score=42.47 Aligned_cols=23 Identities=26% Similarity=0.445 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHh
Q 032487 10 NAKLVLLGDVGAGKSSLVLRFVK 32 (139)
Q Consensus 10 ~~ki~i~G~~~~GKssli~~l~~ 32 (139)
...|+++|.+||||||+.+.|..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999999998875
No 385
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.93 E-value=0.00069 Score=45.45 Aligned_cols=22 Identities=27% Similarity=0.424 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHH
Q 032487 10 NAKLVLLGDVGAGKSSLVLRFV 31 (139)
Q Consensus 10 ~~ki~i~G~~~~GKssli~~l~ 31 (139)
...|.|+|++||||||+++.|.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999999988
No 386
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.93 E-value=0.00021 Score=46.41 Aligned_cols=21 Identities=33% Similarity=0.460 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 032487 12 KLVLLGDVGAGKSSLVLRFVK 32 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~ 32 (139)
-|+|.|++||||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999999875
No 387
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.92 E-value=0.0007 Score=42.85 Aligned_cols=22 Identities=23% Similarity=0.397 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 032487 11 AKLVLLGDVGAGKSSLVLRFVK 32 (139)
Q Consensus 11 ~ki~i~G~~~~GKssli~~l~~ 32 (139)
.-+.++|.+|+||||+++++..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4588999999999999999875
No 388
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.91 E-value=0.00086 Score=43.74 Aligned_cols=23 Identities=30% Similarity=0.544 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHh
Q 032487 10 NAKLVLLGDVGAGKSSLVLRFVK 32 (139)
Q Consensus 10 ~~ki~i~G~~~~GKssli~~l~~ 32 (139)
...|+|.|.+||||||+.+.|..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999875
No 389
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.91 E-value=0.00087 Score=46.85 Aligned_cols=26 Identities=15% Similarity=0.319 Sum_probs=21.9
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHhC
Q 032487 8 NINAKLVLLGDVGAGKSSLVLRFVKG 33 (139)
Q Consensus 8 ~~~~ki~i~G~~~~GKssli~~l~~~ 33 (139)
...--++++|++|+||||+++.+.+.
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~ 152 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANW 152 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34567999999999999999998753
No 390
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.91 E-value=0.00079 Score=45.06 Aligned_cols=25 Identities=24% Similarity=0.312 Sum_probs=21.3
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHh
Q 032487 8 NINAKLVLLGDVGAGKSSLVLRFVK 32 (139)
Q Consensus 8 ~~~~ki~i~G~~~~GKssli~~l~~ 32 (139)
...+.|.|.|.+||||||+.+.|..
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999998865
No 391
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.91 E-value=0.00052 Score=48.53 Aligned_cols=23 Identities=26% Similarity=0.602 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 032487 11 AKLVLLGDVGAGKSSLVLRFVKG 33 (139)
Q Consensus 11 ~ki~i~G~~~~GKssli~~l~~~ 33 (139)
-.++|+|+.|+|||||++.+.+.
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 37999999999999999999975
No 392
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.89 E-value=0.00062 Score=49.15 Aligned_cols=22 Identities=23% Similarity=0.415 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKG 33 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~ 33 (139)
-++|+|+.|+||||+++.+.+.
T Consensus 169 ii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHhh
Confidence 4899999999999999999864
No 393
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=96.88 E-value=0.0003 Score=49.64 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKGQ 34 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~~ 34 (139)
-++++|++|||||||++.+.+-.
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999999764
No 394
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.88 E-value=0.00087 Score=41.86 Aligned_cols=22 Identities=45% Similarity=0.602 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 032487 11 AKLVLLGDVGAGKSSLVLRFVK 32 (139)
Q Consensus 11 ~ki~i~G~~~~GKssli~~l~~ 32 (139)
-.|+|.|.+||||||+.+.|..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998864
No 395
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.87 E-value=0.00082 Score=43.23 Aligned_cols=23 Identities=30% Similarity=0.463 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 032487 11 AKLVLLGDVGAGKSSLVLRFVKG 33 (139)
Q Consensus 11 ~ki~i~G~~~~GKssli~~l~~~ 33 (139)
..+++.|++|+|||+++..+...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999988753
No 396
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.87 E-value=0.00085 Score=44.67 Aligned_cols=24 Identities=25% Similarity=0.321 Sum_probs=20.7
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHh
Q 032487 9 INAKLVLLGDVGAGKSSLVLRFVK 32 (139)
Q Consensus 9 ~~~ki~i~G~~~~GKssli~~l~~ 32 (139)
.++.|+|.|++||||||+.+.|..
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999998874
No 397
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.86 E-value=0.00051 Score=48.04 Aligned_cols=23 Identities=17% Similarity=0.446 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKGQ 34 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~~ 34 (139)
.++++|+.|+|||||++.+.+.-
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGGS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998753
No 398
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.86 E-value=0.001 Score=45.39 Aligned_cols=25 Identities=36% Similarity=0.304 Sum_probs=21.7
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHh
Q 032487 8 NINAKLVLLGDVGAGKSSLVLRFVK 32 (139)
Q Consensus 8 ~~~~ki~i~G~~~~GKssli~~l~~ 32 (139)
.....|+|.|.+||||||+.+.|..
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4467899999999999999998873
No 399
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.86 E-value=0.00077 Score=46.22 Aligned_cols=25 Identities=24% Similarity=0.235 Sum_probs=20.9
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHhC
Q 032487 9 INAKLVLLGDVGAGKSSLVLRFVKG 33 (139)
Q Consensus 9 ~~~ki~i~G~~~~GKssli~~l~~~ 33 (139)
.+.-+++.|+||+|||++++.+...
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3456788899999999999998864
No 400
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.84 E-value=0.00068 Score=46.37 Aligned_cols=22 Identities=23% Similarity=0.323 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKG 33 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~ 33 (139)
-++|+|++|+|||||+..+.+.
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 4789999999999999988753
No 401
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.84 E-value=0.00067 Score=44.35 Aligned_cols=23 Identities=30% Similarity=0.504 Sum_probs=19.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHh
Q 032487 10 NAKLVLLGDVGAGKSSLVLRFVK 32 (139)
Q Consensus 10 ~~ki~i~G~~~~GKssli~~l~~ 32 (139)
.-.+++.|+||+|||+++..+..
T Consensus 58 kn~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 58 KNCLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp CSEEEEESCGGGCHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHHH
Confidence 33599999999999999988875
No 402
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.84 E-value=0.00081 Score=43.65 Aligned_cols=21 Identities=24% Similarity=0.289 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 032487 12 KLVLLGDVGAGKSSLVLRFVK 32 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~ 32 (139)
-++++|++|+|||||+..+..
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 403
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.81 E-value=0.00088 Score=44.15 Aligned_cols=22 Identities=14% Similarity=0.305 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKG 33 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~ 33 (139)
-++|+|++|+|||+|+..+...
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 4789999999999999999873
No 404
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.81 E-value=0.0011 Score=44.32 Aligned_cols=24 Identities=29% Similarity=0.437 Sum_probs=20.9
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHh
Q 032487 9 INAKLVLLGDVGAGKSSLVLRFVK 32 (139)
Q Consensus 9 ~~~ki~i~G~~~~GKssli~~l~~ 32 (139)
....+++.|++|+|||++++.+..
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 345699999999999999999876
No 405
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.80 E-value=0.00082 Score=45.19 Aligned_cols=22 Identities=23% Similarity=0.472 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 032487 11 AKLVLLGDVGAGKSSLVLRFVK 32 (139)
Q Consensus 11 ~ki~i~G~~~~GKssli~~l~~ 32 (139)
-.|+++|++||||||+.+.|..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999998875
No 406
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.80 E-value=0.00084 Score=47.50 Aligned_cols=23 Identities=22% Similarity=0.449 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHh
Q 032487 10 NAKLVLLGDVGAGKSSLVLRFVK 32 (139)
Q Consensus 10 ~~ki~i~G~~~~GKssli~~l~~ 32 (139)
.--++++|++||||||+++.+.+
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHh
Confidence 44689999999999999998875
No 407
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.80 E-value=0.00099 Score=45.13 Aligned_cols=24 Identities=25% Similarity=0.385 Sum_probs=21.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhC
Q 032487 10 NAKLVLLGDVGAGKSSLVLRFVKG 33 (139)
Q Consensus 10 ~~ki~i~G~~~~GKssli~~l~~~ 33 (139)
...+++.|++|+|||++++.+...
T Consensus 51 ~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 456999999999999999999764
No 408
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.79 E-value=0.0011 Score=40.52 Aligned_cols=26 Identities=15% Similarity=0.152 Sum_probs=22.1
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHhCC
Q 032487 9 INAKLVLLGDVGAGKSSLVLRFVKGQ 34 (139)
Q Consensus 9 ~~~ki~i~G~~~~GKssli~~l~~~~ 34 (139)
....+++.|++|+|||++.+.+....
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 34569999999999999999988654
No 409
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.79 E-value=0.00095 Score=45.53 Aligned_cols=24 Identities=29% Similarity=0.423 Sum_probs=21.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhC
Q 032487 10 NAKLVLLGDVGAGKSSLVLRFVKG 33 (139)
Q Consensus 10 ~~ki~i~G~~~~GKssli~~l~~~ 33 (139)
.-.+++.|++|+|||++++.+...
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 457999999999999999999863
No 410
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.78 E-value=0.00086 Score=49.37 Aligned_cols=23 Identities=17% Similarity=0.439 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHh
Q 032487 10 NAKLVLLGDVGAGKSSLVLRFVK 32 (139)
Q Consensus 10 ~~ki~i~G~~~~GKssli~~l~~ 32 (139)
.--++|+|++||||||+++.|.+
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCcccHHHHHHHHHH
Confidence 44689999999999999998875
No 411
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.78 E-value=0.00055 Score=45.23 Aligned_cols=25 Identities=24% Similarity=0.464 Sum_probs=21.6
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHhC
Q 032487 9 INAKLVLLGDVGAGKSSLVLRFVKG 33 (139)
Q Consensus 9 ~~~ki~i~G~~~~GKssli~~l~~~ 33 (139)
...-|+|.|+.||||||+++.|.+.
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 3557999999999999999998764
No 412
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.78 E-value=0.0013 Score=42.81 Aligned_cols=23 Identities=26% Similarity=0.377 Sum_probs=20.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHh
Q 032487 10 NAKLVLLGDVGAGKSSLVLRFVK 32 (139)
Q Consensus 10 ~~ki~i~G~~~~GKssli~~l~~ 32 (139)
..-|+++|.+|+||||+.+.|..
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999999998865
No 413
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.77 E-value=0.00098 Score=42.94 Aligned_cols=22 Identities=23% Similarity=0.545 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKG 33 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~ 33 (139)
.+++.|++|+|||++++.+...
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3999999999999999988753
No 414
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.77 E-value=0.0011 Score=48.09 Aligned_cols=25 Identities=20% Similarity=0.267 Sum_probs=21.8
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHhC
Q 032487 9 INAKLVLLGDVGAGKSSLVLRFVKG 33 (139)
Q Consensus 9 ~~~ki~i~G~~~~GKssli~~l~~~ 33 (139)
.+-.+++.||||||||++++.+.+.
T Consensus 214 ~prGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 214 APKGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCeeEEECcCCCCHHHHHHHHHHH
Confidence 3457999999999999999999864
No 415
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.77 E-value=0.00075 Score=49.93 Aligned_cols=23 Identities=13% Similarity=0.296 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKGQ 34 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~~ 34 (139)
.++|+|+.||||||+++.+.+.-
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGGS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 59999999999999999998743
No 416
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=96.77 E-value=0.0019 Score=42.07 Aligned_cols=67 Identities=13% Similarity=0.043 Sum_probs=47.7
Q ss_pred EEEEEEEeCCCc-ccccccchhhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcC
Q 032487 58 TVKFEIWDTAGQ-ERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLD 129 (139)
Q Consensus 58 ~~~~~i~d~~g~-~~~~~~~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~ 129 (139)
.+.+.++|+|+. .. ......+..+|.++++...+ ..++..+..+++.+.... ..++.+|.|+.|...
T Consensus 67 ~yD~viiD~p~~~~~--~~~~~~l~~aD~viiv~~~~-~~~~~~~~~~~~~l~~~~--~~~~~vv~N~~~~~~ 134 (209)
T 3cwq_A 67 KYQNIVIDTQARPED--EDLEALADGCDLLVIPSTPD-ALALDALMLTIETLQKLG--NNRFRILLTIIPPYP 134 (209)
T ss_dssp GCSEEEEEEECCCSS--SHHHHHHHTSSEEEEEECSS-HHHHHHHHHHHHHHHHTC--SSSEEEEECSBCCTT
T ss_pred cCCEEEEeCCCCcCc--HHHHHHHHHCCEEEEEecCC-chhHHHHHHHHHHHHhcc--CCCEEEEEEecCCcc
Confidence 467899999975 32 22345677899998888754 566666777777777642 456889999998654
No 417
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.77 E-value=0.00095 Score=45.66 Aligned_cols=22 Identities=27% Similarity=0.511 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 032487 11 AKLVLLGDVGAGKSSLVLRFVK 32 (139)
Q Consensus 11 ~ki~i~G~~~~GKssli~~l~~ 32 (139)
.-|++.|++||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4589999999999999999886
No 418
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.77 E-value=0.0012 Score=45.17 Aligned_cols=25 Identities=20% Similarity=0.488 Sum_probs=20.7
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHh
Q 032487 8 NINAKLVLLGDVGAGKSSLVLRFVK 32 (139)
Q Consensus 8 ~~~~ki~i~G~~~~GKssli~~l~~ 32 (139)
.....+++.|++|+|||++++.+..
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHH
Confidence 3455799999999999999986654
No 419
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.76 E-value=0.001 Score=43.40 Aligned_cols=21 Identities=29% Similarity=0.475 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 032487 12 KLVLLGDVGAGKSSLVLRFVK 32 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~ 32 (139)
-+++.|++|+|||++++.+..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998875
No 420
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.75 E-value=0.0011 Score=40.90 Aligned_cols=19 Identities=37% Similarity=0.625 Sum_probs=17.1
Q ss_pred EEEEcCCCCcHHHHHHHHH
Q 032487 13 LVLLGDVGAGKSSLVLRFV 31 (139)
Q Consensus 13 i~i~G~~~~GKssli~~l~ 31 (139)
.+|+|+.|+|||+++..+.
T Consensus 26 ~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5789999999999999876
No 421
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.73 E-value=0.00075 Score=46.87 Aligned_cols=23 Identities=35% Similarity=0.535 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKGQ 34 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~~ 34 (139)
-++|+|+.|+||||+++.+.+..
T Consensus 6 v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHHHSC
T ss_pred EEEEEecCCCCHHHHHHHHHhhc
Confidence 47889999999999999999753
No 422
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.73 E-value=0.0016 Score=43.04 Aligned_cols=25 Identities=20% Similarity=0.400 Sum_probs=21.3
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHhC
Q 032487 9 INAKLVLLGDVGAGKSSLVLRFVKG 33 (139)
Q Consensus 9 ~~~ki~i~G~~~~GKssli~~l~~~ 33 (139)
...-|++.|++||||||+++.|...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4556999999999999999988753
No 423
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=96.73 E-value=0.00089 Score=48.91 Aligned_cols=24 Identities=25% Similarity=0.419 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCC
Q 032487 11 AKLVLLGDVGAGKSSLVLRFVKGQ 34 (139)
Q Consensus 11 ~ki~i~G~~~~GKssli~~l~~~~ 34 (139)
-.++|+|+.|||||||++.|.+-.
T Consensus 139 e~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 139 PRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCcc
Confidence 368999999999999999988753
No 424
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.72 E-value=0.0016 Score=43.92 Aligned_cols=26 Identities=19% Similarity=0.299 Sum_probs=22.4
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHhC
Q 032487 8 NINAKLVLLGDVGAGKSSLVLRFVKG 33 (139)
Q Consensus 8 ~~~~ki~i~G~~~~GKssli~~l~~~ 33 (139)
.....+++.|++|+|||++++.+...
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 44567999999999999999998864
No 425
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.72 E-value=0.001 Score=45.73 Aligned_cols=24 Identities=21% Similarity=0.389 Sum_probs=20.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhC
Q 032487 10 NAKLVLLGDVGAGKSSLVLRFVKG 33 (139)
Q Consensus 10 ~~ki~i~G~~~~GKssli~~l~~~ 33 (139)
.-.+++.|++|+|||++++.+...
T Consensus 49 ~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CceEEEECCCCcCHHHHHHHHHHH
Confidence 346999999999999999999864
No 426
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=96.72 E-value=0.0011 Score=46.77 Aligned_cols=24 Identities=25% Similarity=0.480 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCC
Q 032487 11 AKLVLLGDVGAGKSSLVLRFVKGQ 34 (139)
Q Consensus 11 ~ki~i~G~~~~GKssli~~l~~~~ 34 (139)
-++.|+|++|+|||||++.+.+..
T Consensus 72 q~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 72 QRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 378999999999999999999864
No 427
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.71 E-value=0.0013 Score=47.66 Aligned_cols=24 Identities=29% Similarity=0.450 Sum_probs=21.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhC
Q 032487 10 NAKLVLLGDVGAGKSSLVLRFVKG 33 (139)
Q Consensus 10 ~~ki~i~G~~~~GKssli~~l~~~ 33 (139)
+-.+++.|+||||||++++.+.+.
T Consensus 206 prGiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 446999999999999999999863
No 428
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.69 E-value=0.0013 Score=47.66 Aligned_cols=25 Identities=24% Similarity=0.311 Sum_probs=21.8
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHhC
Q 032487 9 INAKLVLLGDVGAGKSSLVLRFVKG 33 (139)
Q Consensus 9 ~~~ki~i~G~~~~GKssli~~l~~~ 33 (139)
.+-.+++.|+||||||++++.+.+.
T Consensus 214 ~prGvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 214 PPKGVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH
Confidence 3457999999999999999999864
No 429
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.65 E-value=0.0012 Score=46.98 Aligned_cols=23 Identities=17% Similarity=0.427 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHh
Q 032487 10 NAKLVLLGDVGAGKSSLVLRFVK 32 (139)
Q Consensus 10 ~~ki~i~G~~~~GKssli~~l~~ 32 (139)
.-.++++|++|+|||||++.+.+
T Consensus 169 ~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 169 KRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 34689999999999999999885
No 430
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.64 E-value=0.0012 Score=45.61 Aligned_cols=23 Identities=26% Similarity=0.459 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 032487 11 AKLVLLGDVGAGKSSLVLRFVKG 33 (139)
Q Consensus 11 ~ki~i~G~~~~GKssli~~l~~~ 33 (139)
-.+++.|++|+|||++++.+.+.
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~ 60 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNE 60 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 46999999999999999998863
No 431
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.61 E-value=0.0018 Score=42.89 Aligned_cols=26 Identities=23% Similarity=0.316 Sum_probs=21.7
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHh
Q 032487 7 KNINAKLVLLGDVGAGKSSLVLRFVK 32 (139)
Q Consensus 7 ~~~~~ki~i~G~~~~GKssli~~l~~ 32 (139)
......|.|+|.+||||||+.+.|..
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 34566899999999999999998875
No 432
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.61 E-value=0.0021 Score=44.55 Aligned_cols=25 Identities=28% Similarity=0.385 Sum_probs=21.6
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHhC
Q 032487 9 INAKLVLLGDVGAGKSSLVLRFVKG 33 (139)
Q Consensus 9 ~~~ki~i~G~~~~GKssli~~l~~~ 33 (139)
....+++.|++|+|||++++.+...
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH
Confidence 3457999999999999999999753
No 433
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=96.60 E-value=0.0014 Score=47.62 Aligned_cols=24 Identities=25% Similarity=0.354 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCC
Q 032487 11 AKLVLLGDVGAGKSSLVLRFVKGQ 34 (139)
Q Consensus 11 ~ki~i~G~~~~GKssli~~l~~~~ 34 (139)
-++.|+|++|||||||++.+.+..
T Consensus 158 q~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 158 QRMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhccc
Confidence 368999999999999999999764
No 434
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.60 E-value=0.0013 Score=44.62 Aligned_cols=21 Identities=38% Similarity=0.431 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 032487 12 KLVLLGDVGAGKSSLVLRFVK 32 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~ 32 (139)
-++|+|++|+|||||+..+..
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999998875
No 435
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=96.60 E-value=0.0014 Score=48.14 Aligned_cols=21 Identities=43% Similarity=0.548 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 032487 12 KLVLLGDVGAGKSSLVLRFVK 32 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~ 32 (139)
-++|+|+.|||||||++.+.+
T Consensus 31 ~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 31 VTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999885
No 436
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.59 E-value=0.0015 Score=48.64 Aligned_cols=23 Identities=26% Similarity=0.319 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKGQ 34 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~~ 34 (139)
.++++|+.|+|||||++.+.+..
T Consensus 49 ~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999753
No 437
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.59 E-value=0.0024 Score=43.71 Aligned_cols=24 Identities=25% Similarity=0.475 Sum_probs=20.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhC
Q 032487 10 NAKLVLLGDVGAGKSSLVLRFVKG 33 (139)
Q Consensus 10 ~~ki~i~G~~~~GKssli~~l~~~ 33 (139)
.-.+++.|++|+|||++++.+...
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCcCHHHHHHHHHHH
Confidence 347999999999999999988864
No 438
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.57 E-value=0.0016 Score=44.44 Aligned_cols=24 Identities=25% Similarity=0.558 Sum_probs=20.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhC
Q 032487 10 NAKLVLLGDVGAGKSSLVLRFVKG 33 (139)
Q Consensus 10 ~~ki~i~G~~~~GKssli~~l~~~ 33 (139)
...+++.|++|+|||++++.+...
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~ 73 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKL 73 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999998753
No 439
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.56 E-value=0.0016 Score=46.77 Aligned_cols=24 Identities=25% Similarity=0.386 Sum_probs=21.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhC
Q 032487 10 NAKLVLLGDVGAGKSSLVLRFVKG 33 (139)
Q Consensus 10 ~~ki~i~G~~~~GKssli~~l~~~ 33 (139)
+-.+++.||||+|||.+++.+.+.
T Consensus 182 prGvLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 182 PKGVILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp CCCEEEESCSSSSHHHHHHHHHHH
T ss_pred CCceEEeCCCCCCHHHHHHHHHHh
Confidence 456999999999999999999864
No 440
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.55 E-value=0.0025 Score=44.32 Aligned_cols=24 Identities=29% Similarity=0.385 Sum_probs=21.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhC
Q 032487 10 NAKLVLLGDVGAGKSSLVLRFVKG 33 (139)
Q Consensus 10 ~~ki~i~G~~~~GKssli~~l~~~ 33 (139)
.-.+++.|++|+|||++++.+...
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CceEEEECCCCccHHHHHHHHHHH
Confidence 457999999999999999999864
No 441
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.54 E-value=0.0015 Score=45.82 Aligned_cols=24 Identities=21% Similarity=0.394 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhC
Q 032487 10 NAKLVLLGDVGAGKSSLVLRFVKG 33 (139)
Q Consensus 10 ~~ki~i~G~~~~GKssli~~l~~~ 33 (139)
.-.++|.|++|+|||++++.+...
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 346999999999999999998863
No 442
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.52 E-value=0.0024 Score=41.15 Aligned_cols=25 Identities=20% Similarity=0.323 Sum_probs=21.7
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHhC
Q 032487 9 INAKLVLLGDVGAGKSSLVLRFVKG 33 (139)
Q Consensus 9 ~~~ki~i~G~~~~GKssli~~l~~~ 33 (139)
..+.|.++|.+||||||+.+.|...
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHh
Confidence 3578999999999999999988754
No 443
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.51 E-value=0.0018 Score=45.22 Aligned_cols=20 Identities=30% Similarity=0.619 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHHh
Q 032487 13 LVLLGDVGAGKSSLVLRFVK 32 (139)
Q Consensus 13 i~i~G~~~~GKssli~~l~~ 32 (139)
+++.|++|+||||+++.+.+
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 99999999999999998876
No 444
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.51 E-value=0.0025 Score=44.18 Aligned_cols=26 Identities=23% Similarity=0.483 Sum_probs=21.3
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHhC
Q 032487 8 NINAKLVLLGDVGAGKSSLVLRFVKG 33 (139)
Q Consensus 8 ~~~~ki~i~G~~~~GKssli~~l~~~ 33 (139)
+...-|+|+|++|||||+|...|...
T Consensus 8 ~~~~~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 8 SLPKAIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCcEEEEECCCccCHHHHHHHHHHh
Confidence 33445889999999999999998754
No 445
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.51 E-value=0.0026 Score=45.80 Aligned_cols=24 Identities=29% Similarity=0.378 Sum_probs=20.6
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHh
Q 032487 9 INAKLVLLGDVGAGKSSLVLRFVK 32 (139)
Q Consensus 9 ~~~ki~i~G~~~~GKssli~~l~~ 32 (139)
...-|+++|++||||||+.+.|..
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 345688999999999999999875
No 446
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.50 E-value=0.0015 Score=48.68 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKGQ 34 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~~ 34 (139)
-+.++|+.|+|||||++.+.+.-
T Consensus 27 i~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 47899999999999999998753
No 447
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=96.50 E-value=0.0064 Score=44.29 Aligned_cols=64 Identities=20% Similarity=0.215 Sum_probs=38.1
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHh------------------CCCCc---ccccceeeEEEEEE--EEE-CCcEEEEEEE
Q 032487 9 INAKLVLLGDVGAGKSSLVLRFVK------------------GQFIE---FQESTIGAAFFSQT--LAV-NDATVKFEIW 64 (139)
Q Consensus 9 ~~~ki~i~G~~~~GKssli~~l~~------------------~~~~~---~~~~~~~~~~~~~~--~~~-~~~~~~~~i~ 64 (139)
+-.=|.|+|+.++|||+|+|.|++ ..|.. ...-|.|+-..... +.. ++....+.+.
T Consensus 66 ~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vlll 145 (457)
T 4ido_A 66 EVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLM 145 (457)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEEEE
T ss_pred ceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEEEE
Confidence 344477999999999999996652 11111 12224443332221 112 4556789999
Q ss_pred eCCCcccc
Q 032487 65 DTAGQERY 72 (139)
Q Consensus 65 d~~g~~~~ 72 (139)
||.|....
T Consensus 146 DTEG~~d~ 153 (457)
T 4ido_A 146 DTQGTFDS 153 (457)
T ss_dssp EECCBTCT
T ss_pred eccCCCCc
Confidence 99996543
No 448
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.49 E-value=0.0018 Score=45.52 Aligned_cols=22 Identities=27% Similarity=0.436 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKG 33 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~ 33 (139)
.++|.|++|+|||++++.+.+.
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999998864
No 449
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.48 E-value=0.0018 Score=45.14 Aligned_cols=21 Identities=29% Similarity=0.629 Sum_probs=19.3
Q ss_pred EEEEcCCCCcHHHHHHHHHhC
Q 032487 13 LVLLGDVGAGKSSLVLRFVKG 33 (139)
Q Consensus 13 i~i~G~~~~GKssli~~l~~~ 33 (139)
+++.|++|+||||+++.+.+.
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999998864
No 450
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=96.47 E-value=0.0016 Score=48.93 Aligned_cols=22 Identities=27% Similarity=0.477 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKG 33 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~ 33 (139)
.++++|+.|+|||||++.+.+-
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~ 392 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRF 392 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhhc
Confidence 6899999999999999999875
No 451
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.46 E-value=0.0018 Score=48.88 Aligned_cols=23 Identities=35% Similarity=0.395 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKGQ 34 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~~ 34 (139)
-+.++|+.|+|||||++.+.+..
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCC
Confidence 58999999999999999999754
No 452
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=96.46 E-value=0.0018 Score=48.58 Aligned_cols=22 Identities=32% Similarity=0.554 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKG 33 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~ 33 (139)
.++++|+.|+|||||++.+.+-
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999875
No 453
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=96.46 E-value=0.0019 Score=45.69 Aligned_cols=19 Identities=47% Similarity=0.504 Sum_probs=17.3
Q ss_pred EEEEcCCCCcHHHHHHHHH
Q 032487 13 LVLLGDVGAGKSSLVLRFV 31 (139)
Q Consensus 13 i~i~G~~~~GKssli~~l~ 31 (139)
.+|+|+.|+||||+++.+.
T Consensus 26 ~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 26 TVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5689999999999999977
No 454
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.45 E-value=0.003 Score=44.62 Aligned_cols=24 Identities=25% Similarity=0.530 Sum_probs=20.3
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHh
Q 032487 9 INAKLVLLGDVGAGKSSLVLRFVK 32 (139)
Q Consensus 9 ~~~ki~i~G~~~~GKssli~~l~~ 32 (139)
...+|+++|++|+||||+.+.|..
T Consensus 23 ~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 23 YRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHHH
Confidence 346799999999999999987664
No 455
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.41 E-value=0.0021 Score=42.40 Aligned_cols=21 Identities=29% Similarity=0.503 Sum_probs=17.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 032487 12 KLVLLGDVGAGKSSLVLRFVK 32 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~ 32 (139)
-++++|++|+|||+|+.++..
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999877653
No 456
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.41 E-value=0.0024 Score=41.04 Aligned_cols=21 Identities=29% Similarity=0.373 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 032487 12 KLVLLGDVGAGKSSLVLRFVK 32 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~ 32 (139)
.|.|.|.+||||||+.+.|..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998865
No 457
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.38 E-value=0.0026 Score=45.99 Aligned_cols=24 Identities=25% Similarity=0.401 Sum_probs=21.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhC
Q 032487 10 NAKLVLLGDVGAGKSSLVLRFVKG 33 (139)
Q Consensus 10 ~~ki~i~G~~~~GKssli~~l~~~ 33 (139)
+-.+++.|+||+|||++++.+.+.
T Consensus 216 prGvLLyGPPGTGKTlLAkAiA~e 239 (437)
T 4b4t_I 216 PKGVILYGAPGTGKTLLAKAVANQ 239 (437)
T ss_dssp CSEEEEESSTTTTHHHHHHHHHHH
T ss_pred CCCCceECCCCchHHHHHHHHHHH
Confidence 457999999999999999999864
No 458
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.38 E-value=0.0023 Score=44.47 Aligned_cols=21 Identities=33% Similarity=0.651 Sum_probs=19.3
Q ss_pred EEEEcCCCCcHHHHHHHHHhC
Q 032487 13 LVLLGDVGAGKSSLVLRFVKG 33 (139)
Q Consensus 13 i~i~G~~~~GKssli~~l~~~ 33 (139)
+++.|++|+|||++++.+...
T Consensus 61 ~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 999999999999999988764
No 459
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.37 E-value=0.002 Score=44.88 Aligned_cols=25 Identities=16% Similarity=0.072 Sum_probs=21.5
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHhC
Q 032487 9 INAKLVLLGDVGAGKSSLVLRFVKG 33 (139)
Q Consensus 9 ~~~ki~i~G~~~~GKssli~~l~~~ 33 (139)
..-.++|.|+||+|||++++.+...
T Consensus 44 ~~~~lli~GpPGTGKT~~v~~v~~~ 68 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLVNDVMDE 68 (318)
T ss_dssp CCCEEEEECCCSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4567899999999999999998753
No 460
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.37 E-value=0.00094 Score=44.87 Aligned_cols=22 Identities=27% Similarity=0.433 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKG 33 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~ 33 (139)
.+++.|++|+|||++++.+...
T Consensus 46 ~vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 4899999999999999998863
No 461
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.37 E-value=0.002 Score=45.24 Aligned_cols=25 Identities=20% Similarity=0.359 Sum_probs=21.3
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHhC
Q 032487 9 INAKLVLLGDVGAGKSSLVLRFVKG 33 (139)
Q Consensus 9 ~~~ki~i~G~~~~GKssli~~l~~~ 33 (139)
..-.++|.|++|+|||++++.+...
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHH
Confidence 3457999999999999999998853
No 462
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.36 E-value=0.002 Score=47.95 Aligned_cols=23 Identities=26% Similarity=0.372 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKGQ 34 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~~ 34 (139)
.+.|+|+.|||||||++.+.+..
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999754
No 463
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=96.35 E-value=0.0025 Score=40.72 Aligned_cols=21 Identities=19% Similarity=0.362 Sum_probs=19.3
Q ss_pred EEEEcCCCCcHHHHHHHHHhC
Q 032487 13 LVLLGDVGAGKSSLVLRFVKG 33 (139)
Q Consensus 13 i~i~G~~~~GKssli~~l~~~ 33 (139)
++|+|.++||||+|..++...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 789999999999999999865
No 464
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=96.35 E-value=0.0016 Score=48.93 Aligned_cols=22 Identities=27% Similarity=0.462 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKG 33 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~ 33 (139)
.++++|+.|+|||||++.+.+-
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g~ 393 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLRL 393 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999875
No 465
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.35 E-value=0.0026 Score=47.37 Aligned_cols=23 Identities=22% Similarity=0.374 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKGQ 34 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~~ 34 (139)
.+.|+|+.|+|||||++.+.+..
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999854
No 466
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.34 E-value=0.0024 Score=46.58 Aligned_cols=25 Identities=20% Similarity=0.267 Sum_probs=21.7
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHhC
Q 032487 9 INAKLVLLGDVGAGKSSLVLRFVKG 33 (139)
Q Consensus 9 ~~~ki~i~G~~~~GKssli~~l~~~ 33 (139)
.+-.|++.|+||+|||++++.+.+.
T Consensus 242 pprGILLyGPPGTGKTlLAkAiA~e 266 (467)
T 4b4t_H 242 PPKGILLYGPPGTGKTLCARAVANR 266 (467)
T ss_dssp CCSEEEECSCTTSSHHHHHHHHHHH
T ss_pred CCCceEeeCCCCCcHHHHHHHHHhc
Confidence 3557999999999999999999863
No 467
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=96.34 E-value=0.00075 Score=45.65 Aligned_cols=55 Identities=15% Similarity=0.077 Sum_probs=36.1
Q ss_pred CCCccc-ccccchhhhcCCCEEEEEEECCCHHHHHH--HHHHHHHHHHhCCCCCeEEEEEeCCCCcCC
Q 032487 66 TAGQER-YHSLAPMYYRGAAAAIIVYDITNQASFER--AKKWVQELQAQGNPNMVMALAGNKADLLDA 130 (139)
Q Consensus 66 ~~g~~~-~~~~~~~~~~~~~~~i~v~~~~~~~s~~~--~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~ 130 (139)
.||+.. ........+.++|+++.|+|+.++.+... +. ++ +.|.++|+||+|+.+.
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~l~-ll---------~k~~iivlNK~DL~~~ 61 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYGVD-FS---------RKETIILLNKVDIADE 61 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTTSC-CT---------TSEEEEEEECGGGSCH
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChHHH-hc---------CCCcEEEEECccCCCH
Confidence 566542 22334556889999999999998866432 22 21 6899999999999764
No 468
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=96.34 E-value=0.0025 Score=44.88 Aligned_cols=24 Identities=29% Similarity=0.437 Sum_probs=20.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhC
Q 032487 10 NAKLVLLGDVGAGKSSLVLRFVKG 33 (139)
Q Consensus 10 ~~ki~i~G~~~~GKssli~~l~~~ 33 (139)
.-.+++.|++|+|||++++.+...
T Consensus 84 ~~~iLL~GppGtGKT~la~ala~~ 107 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAKAVATE 107 (355)
T ss_dssp CCCEEEECSTTSCHHHHHHHHHHH
T ss_pred CceEEEECCCCCcHHHHHHHHHHH
Confidence 346999999999999999998864
No 469
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.34 E-value=0.0025 Score=44.69 Aligned_cols=23 Identities=17% Similarity=0.550 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 032487 11 AKLVLLGDVGAGKSSLVLRFVKG 33 (139)
Q Consensus 11 ~ki~i~G~~~~GKssli~~l~~~ 33 (139)
-.+++.|++|+|||++++.+...
T Consensus 71 ~~vLl~GppGtGKT~la~~la~~ 93 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQA 93 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999998853
No 470
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.34 E-value=0.0027 Score=43.95 Aligned_cols=23 Identities=22% Similarity=0.379 Sum_probs=19.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHh
Q 032487 10 NAKLVLLGDVGAGKSSLVLRFVK 32 (139)
Q Consensus 10 ~~ki~i~G~~~~GKssli~~l~~ 32 (139)
.--++++|++|+||||++..+.+
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~ 126 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAK 126 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHH
Confidence 34588999999999999988774
No 471
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.33 E-value=0.0024 Score=43.98 Aligned_cols=23 Identities=30% Similarity=0.626 Sum_probs=19.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHh
Q 032487 10 NAKLVLLGDVGAGKSSLVLRFVK 32 (139)
Q Consensus 10 ~~ki~i~G~~~~GKssli~~l~~ 32 (139)
.-.++++|++|+||||++..|..
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~ 127 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAA 127 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 44689999999999999988763
No 472
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.33 E-value=0.0024 Score=48.22 Aligned_cols=23 Identities=22% Similarity=0.374 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKGQ 34 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~~ 34 (139)
.+.|+|+.|+|||||++.+.+..
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999854
No 473
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=96.32 E-value=0.0037 Score=44.00 Aligned_cols=25 Identities=24% Similarity=0.453 Sum_probs=21.7
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHhC
Q 032487 9 INAKLVLLGDVGAGKSSLVLRFVKG 33 (139)
Q Consensus 9 ~~~ki~i~G~~~~GKssli~~l~~~ 33 (139)
....+++.|++|+|||++.+.+...
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~ 74 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARL 74 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4567999999999999999998864
No 474
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.32 E-value=0.0019 Score=48.65 Aligned_cols=22 Identities=32% Similarity=0.597 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKG 33 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~ 33 (139)
.++++|+.|+|||||++.+.+-
T Consensus 383 ~~~ivG~sGsGKSTll~~l~g~ 404 (598)
T 3qf4_B 383 KVALVGPTGSGKTTIVNLLMRF 404 (598)
T ss_dssp EEEEECCTTSSTTHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 6899999999999999998874
No 475
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.31 E-value=0.0029 Score=41.01 Aligned_cols=19 Identities=37% Similarity=0.625 Sum_probs=16.9
Q ss_pred EEEEcCCCCcHHHHHHHHH
Q 032487 13 LVLLGDVGAGKSSLVLRFV 31 (139)
Q Consensus 13 i~i~G~~~~GKssli~~l~ 31 (139)
.+|+|+.|+||||++..+.
T Consensus 26 ~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 26 NLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHH
Confidence 5788999999999999865
No 476
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.30 E-value=0.0023 Score=48.37 Aligned_cols=23 Identities=22% Similarity=0.309 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKGQ 34 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~~ 34 (139)
.+.++|+.|+|||||++.+.+..
T Consensus 119 ~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 119 VVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCChHHHHHHHHhCCC
Confidence 58999999999999999998754
No 477
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=96.29 E-value=0.0027 Score=46.42 Aligned_cols=24 Identities=25% Similarity=0.522 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhC
Q 032487 10 NAKLVLLGDVGAGKSSLVLRFVKG 33 (139)
Q Consensus 10 ~~ki~i~G~~~~GKssli~~l~~~ 33 (139)
.-+++++|++|+|||++++.+...
T Consensus 201 ~~~~LL~G~pG~GKT~la~~la~~ 224 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIAEGLAQQ 224 (468)
T ss_dssp SCEEEEESCTTTTTHHHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHHH
Confidence 347899999999999999988753
No 478
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.29 E-value=0.0028 Score=43.99 Aligned_cols=24 Identities=21% Similarity=0.304 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhC
Q 032487 10 NAKLVLLGDVGAGKSSLVLRFVKG 33 (139)
Q Consensus 10 ~~ki~i~G~~~~GKssli~~l~~~ 33 (139)
...+++.|++|+|||++++.+...
T Consensus 55 ~~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 55 LDHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 346999999999999999999754
No 479
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.29 E-value=0.0026 Score=47.39 Aligned_cols=23 Identities=39% Similarity=0.520 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 032487 11 AKLVLLGDVGAGKSSLVLRFVKG 33 (139)
Q Consensus 11 ~ki~i~G~~~~GKssli~~l~~~ 33 (139)
-.++++|++|+|||++++.+.+.
T Consensus 109 ~~vll~Gp~GtGKTtlar~ia~~ 131 (543)
T 3m6a_A 109 PILCLAGPPGVGKTSLAKSIAKS 131 (543)
T ss_dssp CEEEEESSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 36899999999999999998754
No 480
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.28 E-value=0.0031 Score=44.57 Aligned_cols=24 Identities=25% Similarity=0.583 Sum_probs=21.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhC
Q 032487 10 NAKLVLLGDVGAGKSSLVLRFVKG 33 (139)
Q Consensus 10 ~~ki~i~G~~~~GKssli~~l~~~ 33 (139)
...+++.|++|+|||++++.+...
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~ 95 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKH 95 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999998864
No 481
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.28 E-value=0.0031 Score=40.99 Aligned_cols=25 Identities=32% Similarity=0.541 Sum_probs=21.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCC
Q 032487 10 NAKLVLLGDVGAGKSSLVLRFVKGQ 34 (139)
Q Consensus 10 ~~ki~i~G~~~~GKssli~~l~~~~ 34 (139)
...++|+|++|+|||++...|...-
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhC
Confidence 3468999999999999999998653
No 482
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.28 E-value=0.0039 Score=43.47 Aligned_cols=23 Identities=26% Similarity=0.574 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 032487 11 AKLVLLGDVGAGKSSLVLRFVKG 33 (139)
Q Consensus 11 ~ki~i~G~~~~GKssli~~l~~~ 33 (139)
..|+|+|++||||||+...|...
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~ 28 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADA 28 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999988753
No 483
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.27 E-value=0.0026 Score=44.75 Aligned_cols=22 Identities=23% Similarity=0.395 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKG 33 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~ 33 (139)
-+.|+|++|+|||||+..+...
T Consensus 133 i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 133 ITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999864
No 484
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.27 E-value=0.0031 Score=41.01 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHh
Q 032487 10 NAKLVLLGDVGAGKSSLVLRFVK 32 (139)
Q Consensus 10 ~~ki~i~G~~~~GKssli~~l~~ 32 (139)
...|++.|.+||||||+.+.|..
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999988865
No 485
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.26 E-value=0.0034 Score=42.11 Aligned_cols=25 Identities=20% Similarity=0.428 Sum_probs=21.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCC
Q 032487 10 NAKLVLLGDVGAGKSSLVLRFVKGQ 34 (139)
Q Consensus 10 ~~ki~i~G~~~~GKssli~~l~~~~ 34 (139)
...+++.|++|+|||++++.+....
T Consensus 29 ~~~vll~G~~GtGKt~la~~i~~~~ 53 (265)
T 2bjv_A 29 DKPVLIIGERGTGKELIASRLHYLS 53 (265)
T ss_dssp CSCEEEECCTTSCHHHHHHHHHHTS
T ss_pred CCCEEEECCCCCcHHHHHHHHHHhc
Confidence 3579999999999999999998653
No 486
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.25 E-value=0.0034 Score=43.40 Aligned_cols=24 Identities=38% Similarity=0.562 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhC
Q 032487 10 NAKLVLLGDVGAGKSSLVLRFVKG 33 (139)
Q Consensus 10 ~~ki~i~G~~~~GKssli~~l~~~ 33 (139)
.-.+++.|++|+|||.|+..+...
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~ 175 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHE 175 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 467999999999999999888753
No 487
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.24 E-value=0.0036 Score=44.05 Aligned_cols=25 Identities=20% Similarity=0.288 Sum_probs=21.6
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHhC
Q 032487 9 INAKLVLLGDVGAGKSSLVLRFVKG 33 (139)
Q Consensus 9 ~~~ki~i~G~~~~GKssli~~l~~~ 33 (139)
....+++.|++|+|||++++.+...
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~ 140 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQ 140 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 3557999999999999999999753
No 488
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.21 E-value=0.0031 Score=47.67 Aligned_cols=23 Identities=30% Similarity=0.573 Sum_probs=20.6
Q ss_pred EEEEcCCCCcHHHHHHHHHhCCC
Q 032487 13 LVLLGDVGAGKSSLVLRFVKGQF 35 (139)
Q Consensus 13 i~i~G~~~~GKssli~~l~~~~~ 35 (139)
+.|+|+.|+|||||++.+.+-..
T Consensus 381 v~iiG~NGsGKSTLlk~l~Gl~~ 403 (608)
T 3j16_B 381 LVMMGENGTGKTTLIKLLAGALK 403 (608)
T ss_dssp EEEESCTTSSHHHHHHHHHTSSC
T ss_pred EEEECCCCCcHHHHHHHHhcCCC
Confidence 68999999999999999998643
No 489
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.21 E-value=0.0031 Score=45.75 Aligned_cols=23 Identities=30% Similarity=0.452 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 032487 11 AKLVLLGDVGAGKSSLVLRFVKG 33 (139)
Q Consensus 11 ~ki~i~G~~~~GKssli~~l~~~ 33 (139)
-.+++.|++|+|||+|++.+.+.
T Consensus 131 ~~lll~Gp~G~GKTtLa~aia~~ 153 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSIGNY 153 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999988753
No 490
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=96.21 E-value=0.0041 Score=41.29 Aligned_cols=23 Identities=35% Similarity=0.527 Sum_probs=19.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHh
Q 032487 10 NAKLVLLGDVGAGKSSLVLRFVK 32 (139)
Q Consensus 10 ~~ki~i~G~~~~GKssli~~l~~ 32 (139)
..++.++|++||||||+.+.|..
T Consensus 8 ~~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 8 HMRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp -CEEEEECCTTSCHHHHHHHHHH
T ss_pred ccceeeECCCCCCHHHHHHHHHH
Confidence 56899999999999999988764
No 491
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.20 E-value=0.0031 Score=46.54 Aligned_cols=22 Identities=27% Similarity=0.453 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKG 33 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~ 33 (139)
.++++|++|+|||+|++.+.+.
T Consensus 66 GvLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 66 GVLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4999999999999999999864
No 492
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.20 E-value=0.003 Score=44.39 Aligned_cols=23 Identities=22% Similarity=0.275 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 032487 11 AKLVLLGDVGAGKSSLVLRFVKG 33 (139)
Q Consensus 11 ~ki~i~G~~~~GKssli~~l~~~ 33 (139)
-.+++.|++|+|||++++.+...
T Consensus 46 ~~vll~G~~G~GKT~la~~l~~~ 68 (384)
T 2qby_B 46 FSNLFLGLTGTGKTFVSKYIFNE 68 (384)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999988753
No 493
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.18 E-value=0.0034 Score=46.08 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 032487 11 AKLVLLGDVGAGKSSLVLRFVKG 33 (139)
Q Consensus 11 ~ki~i~G~~~~GKssli~~l~~~ 33 (139)
-.++++|++|+|||++++.+.+.
T Consensus 50 ~gvLL~GppGtGKT~Laraia~~ 72 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLARAVAGE 72 (476)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 35999999999999999999863
No 494
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=96.18 E-value=0.0035 Score=43.32 Aligned_cols=22 Identities=41% Similarity=0.490 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKG 33 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~ 33 (139)
-++|.|++|+|||+|++.+...
T Consensus 33 ~v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 33 LTLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcCCHHHHHHHHHHH
Confidence 5889999999999999998854
No 495
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=96.17 E-value=0.0016 Score=48.86 Aligned_cols=22 Identities=27% Similarity=0.419 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKG 33 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~ 33 (139)
.++++|+.|+|||||++.+.+-
T Consensus 369 ~~~ivG~sGsGKSTll~~l~g~ 390 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIPRF 390 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTTTS
T ss_pred EEEEECCCCChHHHHHHHHhcC
Confidence 6899999999999999988864
No 496
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.16 E-value=0.05 Score=37.40 Aligned_cols=21 Identities=14% Similarity=0.313 Sum_probs=17.4
Q ss_pred EEEEcCCCCcHHHHHHHHHhC
Q 032487 13 LVLLGDVGAGKSSLVLRFVKG 33 (139)
Q Consensus 13 i~i~G~~~~GKssli~~l~~~ 33 (139)
+++.|++|+|||++++.+...
T Consensus 51 ~L~~G~~G~GKT~la~~la~~ 71 (324)
T 3u61_B 51 ILHSPSPGTGKTTVAKALCHD 71 (324)
T ss_dssp EEECSSTTSSHHHHHHHHHHH
T ss_pred EEeeCcCCCCHHHHHHHHHHH
Confidence 566677999999999999754
No 497
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=96.15 E-value=0.0044 Score=41.04 Aligned_cols=23 Identities=30% Similarity=0.527 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 032487 11 AKLVLLGDVGAGKSSLVLRFVKG 33 (139)
Q Consensus 11 ~ki~i~G~~~~GKssli~~l~~~ 33 (139)
.-|++.|..||||||+++.|...
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 46899999999999999998853
No 498
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.14 E-value=0.0025 Score=44.16 Aligned_cols=22 Identities=27% Similarity=0.291 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q 032487 12 KLVLLGDVGAGKSSLVLRFVKG 33 (139)
Q Consensus 12 ki~i~G~~~~GKssli~~l~~~ 33 (139)
.+++.|++|+|||++++.+...
T Consensus 48 ~vll~G~pGtGKT~la~~la~~ 69 (331)
T 2r44_A 48 HILLEGVPGLAKTLSVNTLAKT 69 (331)
T ss_dssp CEEEESCCCHHHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 6999999999999999998763
No 499
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=96.13 E-value=0.004 Score=45.30 Aligned_cols=23 Identities=26% Similarity=0.460 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 032487 11 AKLVLLGDVGAGKSSLVLRFVKG 33 (139)
Q Consensus 11 ~ki~i~G~~~~GKssli~~l~~~ 33 (139)
..+++.|++|+|||++++.+...
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~ 73 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARY 73 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCcHHHHHHHHHHH
Confidence 36899999999999999998864
No 500
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=96.12 E-value=0.0023 Score=42.99 Aligned_cols=26 Identities=27% Similarity=0.330 Sum_probs=21.3
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHhC
Q 032487 8 NINAKLVLLGDVGAGKSSLVLRFVKG 33 (139)
Q Consensus 8 ~~~~ki~i~G~~~~GKssli~~l~~~ 33 (139)
.+..-|+|.|..||||||+++.|...
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHh
Confidence 34567999999999999999888753
Done!