Query 032490
Match_columns 139
No_of_seqs 108 out of 289
Neff 6.7
Searched_HMMs 29240
Date Tue Mar 26 00:21:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032490.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032490hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pg7_A Neurofibromin; SEC lipi 100.0 5E-35 1.7E-39 232.1 12.0 118 9-128 1-119 (256)
2 3peg_A Neurofibromin; SEC14 do 100.0 8.8E-30 3E-34 205.3 11.8 121 8-130 19-140 (290)
3 1r5l_A Alpha-TTP, protein (alp 99.5 5.3E-14 1.8E-18 109.3 10.3 114 15-130 79-201 (262)
4 3hx3_A Retinaldehyde-binding p 99.5 7.1E-14 2.4E-18 112.8 10.6 120 10-131 133-261 (316)
5 1aua_A Phosphatidylinositol tr 99.4 6E-13 2.1E-17 105.6 7.6 115 14-130 99-232 (296)
6 1olm_A SEC14-like protein 2; l 99.4 1.8E-12 6.2E-17 107.0 9.2 106 23-130 88-212 (403)
7 3q8g_A CRAL-TRIO domain-contai 99.3 2.7E-12 9.2E-17 103.9 8.1 116 13-130 113-247 (320)
8 1c76_A Staphylokinase, SAK; be 73.8 9.8 0.00034 26.8 6.0 55 22-77 28-85 (136)
9 2sak_A Staphylokinase; plasmin 73.3 11 0.00039 26.1 6.2 56 21-77 12-70 (121)
10 2lf0_A Uncharacterized protein 64.5 2.2 7.4E-05 29.7 1.0 17 99-115 89-105 (123)
11 2q3l_A Uncharacterized protein 33.3 1.1E+02 0.0036 20.4 6.4 80 46-131 33-112 (126)
12 3cpt_A Mitogen-activated prote 24.6 1.2E+02 0.004 21.5 4.6 35 19-53 37-71 (143)
13 3kdg_A DNA mismatch repair pro 22.1 29 0.00099 25.2 1.0 35 4-38 151-185 (197)
No 1
>3pg7_A Neurofibromin; SEC lipid binding domain, PH domain, lipid binding protein; HET: PTY; 2.19A {Homo sapiens} PDB: 2e2x_A* 3p7z_A* 2d4q_A*
Probab=100.00 E-value=5e-35 Score=232.13 Aligned_cols=118 Identities=19% Similarity=0.191 Sum_probs=111.0
Q ss_pred hhhHHHHHhcCcEEEeccCCCCCeEEEEEcccCCCcCCCHHHHHHHHHHHhhcccCCCCeEEEEEecCcccCcCcccHHH
Q 032490 9 SEQEELIDRLEIFKIHGRDKQGRKILRIIGKFFPARLLSVEVLKRYLSERVYPRLGKKAFTVLYVHTGVQRSENFAGISA 88 (139)
Q Consensus 9 ~e~~~~i~~~~ily~~G~D~~GrpVvvi~a~~~p~~~~d~e~ll~y~~~~~ld~~~~~~y~lVy~~tg~~~~~n~p~~~w 88 (139)
.||++||++++++|++|.|++||||||++||++|+..+|+|.|++|+++ +++++.+++|.+|||||++ +..|.|+.+|
T Consensus 1 ~ed~~~i~~~~ify~~G~d~dGrpViv~~~~~l~~~~~D~e~Ll~~vl~-tl~~~~~~~y~lV~d~T~~-~~~n~p~~~w 78 (256)
T 3pg7_A 1 KEEFKALKTLSIFYQAGTSKAGNPIFYYVARRFKTGQINGDLLIYHVLL-TLKPYYAKPYEIVVDLTHT-GPSNRFKTDF 78 (256)
T ss_dssp CTTTTTHHHHTSEEEEEECTTSCEEEEEEGGGCCBTTBCHHHHHHHHHH-HHTTTTTSCEEEEEECTTC-CGGGCCCHHH
T ss_pred CcchhHHHHcCCEEEcCcCCCCCEEEEEEeecCCCCCCCHHHHHHHHHH-HHHHhcCCCeEEEEECCCC-CcccCCcHHH
Confidence 4899999999999999999999999999999999988999999999998 6999999999999999999 7899999999
Q ss_pred HHHHHHhcChhhHhccceEEEEcCChHHHHHHHHhcc-hhc
Q 032490 89 LRSIYDAIPANVKENLQAVYFVHPGLQARLFLATFGR-LFF 128 (139)
Q Consensus 89 l~~~y~~l~~~~kknLk~lyiVHPt~~~K~~~~~~~p-fi~ 128 (139)
|+++|+++|++|+|||+++||||||+|+|.+++.+.+ |++
T Consensus 79 l~~~~~llp~~~~kNlk~~Yivnpt~~~k~~~~~~~~~~~~ 119 (256)
T 3pg7_A 79 LSKWFVVFPGFAYDNVSAVYIYNCNSWVREYTKYHERLLTG 119 (256)
T ss_dssp HHHTTTSSCHHHHHTEEEEEEESCCHHHHHHHHHTHHHHTT
T ss_pred HHHHHHHcCHHHHhcccEEEEECCCHHHHHHHHHHhccccc
Confidence 9999999999999999999999999999988776544 443
No 2
>3peg_A Neurofibromin; SEC14 domain, pleckstrin homology domain, PH domain, phosphatidylethanolamin binding, lipid binding, lipid bindi protein; HET: PEV; 2.52A {Homo sapiens}
Probab=99.96 E-value=8.8e-30 Score=205.33 Aligned_cols=121 Identities=18% Similarity=0.159 Sum_probs=108.4
Q ss_pred hhhhHHHHHhcCcEEEeccCCCCCeEEEEEcccCCCcCCCHHHHHHHHHHHhhcccCCCCeEEEEEecCcccCcCcccHH
Q 032490 8 ESEQEELIDRLEIFKIHGRDKQGRKILRIIGKFFPARLLSVEVLKRYLSERVYPRLGKKAFTVLYVHTGVQRSENFAGIS 87 (139)
Q Consensus 8 ~~e~~~~i~~~~ily~~G~D~~GrpVvvi~a~~~p~~~~d~e~ll~y~~~~~ld~~~~~~y~lVy~~tg~~~~~n~p~~~ 87 (139)
..|++++|++.+++|++|.|++||||||+++|++|...+|+|.++.|+++ +++++.+++|++|||||++ +..|.|+..
T Consensus 19 ~~e~~~~i~~~~~f~~~g~d~dG~PViv~~~~~~~~~~~D~e~Lly~il~-tl~~~~~~~y~lV~D~T~~-~~~n~p~~~ 96 (290)
T 3peg_A 19 EKEEFKALKTLSIFYQAGTSKAGNPIFYYVARRFKTGQINGDLLIYHVLL-TLKPYYAKPYEIVVDLTHT-GPSNRFKTD 96 (290)
T ss_dssp -----CCGGGTTTEEEEEECTTSCEEEEEEGGGCCBTTBCHHHHHHHHHH-HHTTTTTSCEEEEEECTTC-CGGGCCCHH
T ss_pred ChhhhhhhhcCCeEEEeccCCCCCEEEEEEeecCCccCCCHHHHHHHHHH-HHHHhcCCCeEEEEEcCCC-CccCCChHH
Confidence 35789999999999999999999999999999999988999999999998 6999999999999999999 789999999
Q ss_pred HHHHHHHhcChhhHhccceEEEEcCChHHHHHHH-HhcchhccC
Q 032490 88 ALRSIYDAIPANVKENLQAVYFVHPGLQARLFLA-TFGRLFFNG 130 (139)
Q Consensus 88 wl~~~y~~l~~~~kknLk~lyiVHPt~~~K~~~~-~~~pfi~s~ 130 (139)
|++++|+++|++|+|||+++||||||+|+|.+++ .+++|.+.+
T Consensus 97 ~l~~~~~llp~~~~kNl~~~Yi~np~~~f~~~~k~~~~~~~~~k 140 (290)
T 3peg_A 97 FLSKWFVVFPGFAYDNVSAVYIYNCNSWVREYTKYHERLLTGLK 140 (290)
T ss_dssp HHGGGGTSSCHHHHHTEEEEEEESCCHHHHHHHHHTTTTGGGGT
T ss_pred HHHHHHHHCCHHHHhhccEEEEECCCHHHHHHHHHHHhhhhhhh
Confidence 9999999999999999999999999999999775 556655543
No 3
>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with vitamin E deficiency, transport protein; HET: MSE VIV; 1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A* 1oip_A*
Probab=99.52 E-value=5.3e-14 Score=109.26 Aligned_cols=114 Identities=8% Similarity=0.094 Sum_probs=92.6
Q ss_pred HHhcCcE-EEeccCCCCCeEEEEEcccCCCcCCCHHHHHHHHHHHhhcccCC------CCeEEEEEecCcccCcCc--cc
Q 032490 15 IDRLEIF-KIHGRDKQGRKILRIIGKFFPARLLSVEVLKRYLSERVYPRLGK------KAFTVLYVHTGVQRSENF--AG 85 (139)
Q Consensus 15 i~~~~il-y~~G~D~~GrpVvvi~a~~~p~~~~d~e~ll~y~~~~~ld~~~~------~~y~lVy~~tg~~~~~n~--p~ 85 (139)
+-+.|.. +..|.|++||||+++-..++.++..+.+.++++.+. +++.... +.+++|++.+|+ +..|. ++
T Consensus 79 ~~~~g~~~~l~g~D~~GrpV~i~~~~~~d~~~~~~~~~~r~~~~-~~E~~~~~~~~~~~g~~~I~D~~g~-s~~~~~~~~ 156 (262)
T 1r5l_A 79 LLKAGYHGVLRSRDPTGSKVLIYRIAHWDPKVFTAYDVFRVSLI-TSELIVQEVETQRNGIKAIFDLEGW-QFSHAFQIT 156 (262)
T ss_dssp HHHTTCEEECSSCCTTCCEEEEEEGGGCCTTTSCHHHHHHHHHH-HHHHHTTSHHHHHHCEEEEEECTTC-CHHHHHHCC
T ss_pred HHHcCCccCCCCcCCCCCEEEEEeccccCcccCCHHHHHHHHHH-HHHHHHhChhhcccceEEEEECCCC-CHHHHhccC
Confidence 3355654 456999999999999998877766777777777765 4554333 358999999999 55553 46
Q ss_pred HHHHHHHHHhcChhhHhccceEEEEcCChHHHHHHHHhcchhccC
Q 032490 86 ISALRSIYDAIPANVKENLQAVYFVHPGLQARLFLATFGRLFFNG 130 (139)
Q Consensus 86 ~~wl~~~y~~l~~~~kknLk~lyiVHPt~~~K~~~~~~~pfi~s~ 130 (139)
.+.++++...++..|+++|+++||||+++++.++|++++||+..+
T Consensus 157 ~~~~k~~~~~~q~~yPerl~~i~ivN~P~~f~~~~~~vkpfl~~~ 201 (262)
T 1r5l_A 157 PSVAKKIAAVLTDSFPLKVRGIHLINEPVIFHAVFSMIKPFLTEK 201 (262)
T ss_dssp HHHHHHHHHHHHTSSSSCEEEEEEESCCGGGHHHHHHHGGGSCHH
T ss_pred HHHHHHHHHHHHhhCChhhceEEEEeCCHHHHHHHHHHHHhcCHH
Confidence 789999999999999999999999999999999999999998754
No 4
>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein, 11-CIS-retinal, bothnia dystrophy, acetylation, cytoplasm, disease mutation; HET: RET; 1.69A {Homo sapiens} PDB: 3hy5_A*
Probab=99.51 E-value=7.1e-14 Score=112.78 Aligned_cols=120 Identities=13% Similarity=0.157 Sum_probs=96.8
Q ss_pred hhHHHHHhcCc-EEEeccCCCCCeEEEEEcccCCCcCCCHHHHHHHHHHHhhcccCC------CCeEEEEEecCcccCcC
Q 032490 10 EQEELIDRLEI-FKIHGRDKQGRKILRIIGKFFPARLLSVEVLKRYLSERVYPRLGK------KAFTVLYVHTGVQRSEN 82 (139)
Q Consensus 10 e~~~~i~~~~i-ly~~G~D~~GrpVvvi~a~~~p~~~~d~e~ll~y~~~~~ld~~~~------~~y~lVy~~tg~~~~~n 82 (139)
++..++-+.|. .+..|.|++||||+++-..++.++..+.+.++++++. +++.... +.+++|++.+|+ +..+
T Consensus 133 ~~i~~~l~~g~~~~l~g~Dk~GrpVii~r~g~~d~~~~~~~~~~r~~~~-~lE~~l~~~~~~v~g~v~IiD~~g~-sl~~ 210 (316)
T 3hx3_A 133 EAVRCTIEAGYPGVLSSRDKYGRVVMLFNIENWQSQEITFDEILQAYCF-ILEKLLENEETQINGFCIIENFKGF-TMQQ 210 (316)
T ss_dssp HHHHHHHHTTSSEECSSCCTTSCEEEEEECTTCCTTTSCHHHHHHHHHH-HHHHHTTSHHHHHHCEEEEEECTTC-CHHH
T ss_pred HHHHHHHHcCCccccCCCCCCCCEEEEEecccCCCCCCCHHHHHHHHHH-HHHHHHhcccCCcceEEEEEECCCC-CHHH
Confidence 34444445566 4456999999999999988777766788888888876 5665433 469999999999 5544
Q ss_pred c--ccHHHHHHHHHhcChhhHhccceEEEEcCChHHHHHHHHhcchhccCC
Q 032490 83 F--AGISALRSIYDAIPANVKENLQAVYFVHPGLQARLFLATFGRLFFNGV 131 (139)
Q Consensus 83 ~--p~~~wl~~~y~~l~~~~kknLk~lyiVHPt~~~K~~~~~~~pfi~s~~ 131 (139)
. .+.+.++++...++..|+.+|+++||||+++++.++|++++||++.++
T Consensus 211 ~~~~~~~~~k~~~~~lq~~YPerL~~i~iiN~P~~f~~i~~ivkpfl~~kt 261 (316)
T 3hx3_A 211 AASLRTSDLRKMVDMLQDSFPAWFKAIHFIHQPWYFTTTYNVVKPFLKSKL 261 (316)
T ss_dssp HHHCCHHHHHHHHHHHHTTSTTTEEEEEEESCCTTHHHHHHHHGGGCCHHH
T ss_pred hccCChHHHHHHHHHHHHhhhhhhceEEEEeCCHHHHHHHHHHHHhCCHHh
Confidence 2 456789999999999999999999999999999999999999987643
No 5
>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1
Probab=99.39 E-value=6e-13 Score=105.60 Aligned_cols=115 Identities=15% Similarity=0.055 Sum_probs=89.1
Q ss_pred HHHhcCcEEEeccCCCCCeEEEEEcccCCCcC----CCHHHHHHHHHHHhhcc--------------cCCCCeEEEEEec
Q 032490 14 LIDRLEIFKIHGRDKQGRKILRIIGKFFPARL----LSVEVLKRYLSERVYPR--------------LGKKAFTVLYVHT 75 (139)
Q Consensus 14 ~i~~~~ily~~G~D~~GrpVvvi~a~~~p~~~----~d~e~ll~y~~~~~ld~--------------~~~~~y~lVy~~t 75 (139)
.+.+....+..|.|++||||+++-..++..+. .+.++++++++. .++. ...+.+++|++.+
T Consensus 99 ~~~~~~~~~~~g~Dk~GrpV~i~~~g~~d~~~~~~~~~~~~~~~~~~~-~~E~~~~~~~~~~s~~~g~~v~~~~~I~D~~ 177 (296)
T 1aua_A 99 LIAKFYPQYYHKTDKDGRPVYFEELGAVNLHEMNKVTSEERMLKNLVW-EYESVVQYRLPACSRAAGHLVETSCTIMDLK 177 (296)
T ss_dssp HHGGGSCCEEEEECTTSCEEEEECGGGCCHHHHTTTCCHHHHHHHHHH-HHHHHHHTHHHHHHHHHTSCCCCEEEEEECT
T ss_pred HHHHhCCceecccCCCCCEEEEEeeccCChHHhhccCCHHHHHHHHHH-HHHHHHHHHHHHHHHhcCCCceeEEEEEECC
Confidence 34444444567999999999999887765432 467777776664 2332 1235689999999
Q ss_pred CcccCcCccc-HHHHHHHHHhcChhhHhccceEEEEcCChHHHHHHHHhcchhccC
Q 032490 76 GVQRSENFAG-ISALRSIYDAIPANVKENLQAVYFVHPGLQARLFLATFGRLFFNG 130 (139)
Q Consensus 76 g~~~~~n~p~-~~wl~~~y~~l~~~~kknLk~lyiVHPt~~~K~~~~~~~pfi~s~ 130 (139)
|+ +..+.+. .++++++...++..|+++|+++||||+.+++.++|++++||+..+
T Consensus 178 g~-s~~~~~~~~~~~k~~~~~~q~~YPerl~~i~iiN~P~~f~~~~~iikpfl~~~ 232 (296)
T 1aua_A 178 GI-SISSAYSVMSYVREASYISQNYYPERMGKFYIINAPFGFSTAFRLFKPFLDPV 232 (296)
T ss_dssp TC-CHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEEESCCHHHHHHHHHHGGGSCHH
T ss_pred CC-CHHHHHHHHHHHHHHHHHHHHhHHHhhCeEEEECchHHHHHHHHHHHhhcCHh
Confidence 99 5556544 578899999999999999999999999999999999999999753
No 6
>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E*
Probab=99.36 E-value=1.8e-12 Score=107.04 Aligned_cols=106 Identities=16% Similarity=0.145 Sum_probs=88.2
Q ss_pred EeccCCCCCeEEEEEcccCCCc----CCCHHHHHHHHHHHhhccc-------------CCCCeEEEEEecCcccCcCc--
Q 032490 23 IHGRDKQGRKILRIIGKFFPAR----LLSVEVLKRYLSERVYPRL-------------GKKAFTVLYVHTGVQRSENF-- 83 (139)
Q Consensus 23 ~~G~D~~GrpVvvi~a~~~p~~----~~d~e~ll~y~~~~~ld~~-------------~~~~y~lVy~~tg~~~~~n~-- 83 (139)
..|.|++||||+++...++..+ ..+.+.+++|++. ++|.. ..+.+++|++.+|+ +..+.
T Consensus 88 ~~g~Dk~GrpV~~~~~g~~d~~~l~~~~~~~~~~r~~~~-~~E~~~~~~~~~s~~~g~~v~~~~~I~D~~g~-sl~~~~~ 165 (403)
T 1olm_A 88 MCGYDLDGCPVWYDIIGPLDAKGLLFSASKQDLLRTKMR-ECELLLQECAHQTTKLGRKVETITIIYDCEGL-GLKHLWK 165 (403)
T ss_dssp EEEECTTSCEEEEEECTTCCHHHHHTTSCHHHHHHHHHH-HHHHHHHHHHHHHHHHTSCCCCEEEEEECTTC-CGGGGCH
T ss_pred eeccCCCcCEEEEEecCCCChHHhhccCCHHHHHHHHHH-HHHHHHHHHHhhHHhhCCcccceEEEEECCCC-CHHHHhh
Confidence 4699999999999998877654 3577888888776 45432 13679999999998 55554
Q ss_pred ccHHHHHHHHHhcChhhHhccceEEEEcCChHHHHHHHHhcchhccC
Q 032490 84 AGISALRSIYDAIPANVKENLQAVYFVHPGLQARLFLATFGRLFFNG 130 (139)
Q Consensus 84 p~~~wl~~~y~~l~~~~kknLk~lyiVHPt~~~K~~~~~~~pfi~s~ 130 (139)
|...+++++.+.++..|+++|+++||||+.+++.++|++++||+..+
T Consensus 166 ~~~~~~k~~~~~lq~~YPerl~~i~iiN~P~~f~~i~~~ikpfl~~~ 212 (403)
T 1olm_A 166 PAVEAYGEFLCMFEENYPETLKRLFVVKAPKLFPVAYNLIKPFLSED 212 (403)
T ss_dssp HHHHHHHHHHHHHHHHSTTCEEEEEEESCCTTHHHHHHHHGGGSCHH
T ss_pred HHHHHHHHHHHHHHhhCcHhhCeEEEEeCCHHHHHHHHHHHhhcCHh
Confidence 56889999999999999999999999999999999999999999753
No 7
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A*
Probab=99.33 E-value=2.7e-12 Score=103.91 Aligned_cols=116 Identities=13% Similarity=0.086 Sum_probs=90.2
Q ss_pred HHHHhcCcEEEeccCCCCCeEEEEEcccCCCcC----CCHHHHHHHHHHHhhccc--------------CCCCeEEEEEe
Q 032490 13 ELIDRLEIFKIHGRDKQGRKILRIIGKFFPARL----LSVEVLKRYLSERVYPRL--------------GKKAFTVLYVH 74 (139)
Q Consensus 13 ~~i~~~~ily~~G~D~~GrpVvvi~a~~~p~~~----~d~e~ll~y~~~~~ld~~--------------~~~~y~lVy~~ 74 (139)
..+.+....+..|.|++||||+++-...+..+. .+.++++++++. .++.+ ..+..++|++.
T Consensus 113 ~~~~~~~~~~~~g~Dk~GRpV~i~r~g~~d~~~l~~~~~~~~~lr~lv~-~~E~~~~~~l~~~s~~~G~~ve~~~~IiD~ 191 (320)
T 3q8g_A 113 IKLAKMYPQYYHHVDKDGRPLYFAELGGINLKKMYKITTEKQMLRNLVK-EYELFATYRVPACSRRAGYLIETSCTVLDL 191 (320)
T ss_dssp HHHHTTSCEEEEEECTTCCEEEEEECTTCCHHHHHHHCCHHHHHHHHHH-HHHHHHHTHHHHHHHHHTSCCCCEEEEEEC
T ss_pred HHHHHhCCceecCCCCCcCEEEEEeccccCHHHhhccCCHHHHHHHHHH-HHHHHHHHhhhHHHHhcCCCcceeEEEEEC
Confidence 345666667778999999999999988775532 256666666543 22221 23567899999
Q ss_pred cCcccCcCccc-HHHHHHHHHhcChhhHhccceEEEEcCChHHHHHHHHhcchhccC
Q 032490 75 TGVQRSENFAG-ISALRSIYDAIPANVKENLQAVYFVHPGLQARLFLATFGRLFFNG 130 (139)
Q Consensus 75 tg~~~~~n~p~-~~wl~~~y~~l~~~~kknLk~lyiVHPt~~~K~~~~~~~pfi~s~ 130 (139)
+|+ +..+.+. .++++++...++..|+++|+++||||+.++++++|++++||+..+
T Consensus 192 ~g~-sl~~~~~~~~~~k~~~~~lq~~YPerl~~i~iiN~P~~f~~~~~~ikpfl~~~ 247 (320)
T 3q8g_A 192 KGI-SLSNAYHVLSYIKDVADISQNYYPERMGKFYIIHSPFGFSTMFKMVKPFLDPV 247 (320)
T ss_dssp TTC-CHHHHHHTHHHHHHHHHHHHHHSTTCEEEEEEESCCTTHHHHHTTTGGGSCHH
T ss_pred CCC-CHHHHHHHHHHHHHHHHHHHhhCchhhceEEEECCCHHHHHHHHHHHHhCCHH
Confidence 998 5555543 678999999999999999999999999999999999999998754
No 8
>1c76_A Staphylokinase, SAK; beta-grAsp family, hydrolase; 2.25A {Staphylococcus aureus} SCOP: d.15.5.1 PDB: 1c77_A 1c78_A 1c79_A 1ssn_A
Probab=73.80 E-value=9.8 Score=26.75 Aligned_cols=55 Identities=18% Similarity=0.282 Sum_probs=43.0
Q ss_pred EEeccCCCCCeEEE--EEcccCCC-cCCCHHHHHHHHHHHhhcccCCCCeEEEEEecCc
Q 032490 22 KIHGRDKQGRKILR--IIGKFFPA-RLLSVEVLKRYLSERVYPRLGKKAFTVLYVHTGV 77 (139)
Q Consensus 22 y~~G~D~~GrpVvv--i~a~~~p~-~~~d~e~ll~y~~~~~ld~~~~~~y~lVy~~tg~ 77 (139)
-+-|+|..|+-|+. +.--++-. ..++-|.++.|+.. .+|..+.++|.+|=|+.++
T Consensus 28 NVTGvD~~G~~ilsP~Y~e~~Lk~G~tltKeeil~~VQ~-~idas~~~~f~vV~~~e~a 85 (136)
T 1c76_A 28 NVTGVDGKGNELLSPHYVEFPIKPGTTLTKEKIEYYVEW-ALDATAYKEFRVVELDPSA 85 (136)
T ss_dssp EEEEECTTCCEEECCCCEEEECCTTCEECHHHHHHHHHH-HHTTSTTTTEEEEEECTTC
T ss_pred EEeeecCCCCEEeccccEEEecCcCceecHHHHHHHHHH-HhhhhhcCceEEEecCCCc
Confidence 34599999998873 33334444 45789999999987 6999999999999888765
No 9
>2sak_A Staphylokinase; plasminogen activation, fibrinolysis, hydrolase, plasminogen activator; 1.80A {Staphylococcus aureus} SCOP: d.15.5.1 PDB: 1bui_C*
Probab=73.31 E-value=11 Score=26.07 Aligned_cols=56 Identities=18% Similarity=0.233 Sum_probs=44.5
Q ss_pred EEEeccCCCCCeEEEEEcc--cCCC-cCCCHHHHHHHHHHHhhcccCCCCeEEEEEecCc
Q 032490 21 FKIHGRDKQGRKILRIIGK--FFPA-RLLSVEVLKRYLSERVYPRLGKKAFTVLYVHTGV 77 (139)
Q Consensus 21 ly~~G~D~~GrpVvvi~a~--~~p~-~~~d~e~ll~y~~~~~ld~~~~~~y~lVy~~tg~ 77 (139)
+-..|+|+.|.-++..=.- .+-+ ..++-+.++.|+-. .++....++|-+|=|+..+
T Consensus 12 INvtGvd~~g~~~~~p~y~d~~l~~g~~~tK~elL~~Vq~-~idas~~~qf~vVdf~e~A 70 (121)
T 2sak_A 12 VNVTGVDSKGNELLSPHYVEFPIKPGTTLTKEKIEYYVEW-ALDATAYKEFRVVELDPSA 70 (121)
T ss_dssp EEEEEECTTCCEEEEEEEEEEECCTTCEECHHHHHHHHHH-HHTTSTTTTCEEEEECTTC
T ss_pred EEEEeEeCCCCEEEeeeeEEEEcccCcEecHHHHHHHHHH-HhhhhhccceEEEecCccc
Confidence 4456999999999986554 4444 34789999999988 5888888899999998875
No 10
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=64.55 E-value=2.2 Score=29.71 Aligned_cols=17 Identities=24% Similarity=0.481 Sum_probs=14.6
Q ss_pred hhHhccceEEEEcCChH
Q 032490 99 NVKENLQAVYFVHPGLQ 115 (139)
Q Consensus 99 ~~kknLk~lyiVHPt~~ 115 (139)
+.||.++.+.||||-.-
T Consensus 89 kLKKSVrGLVVVHPMTa 105 (123)
T 2lf0_A 89 KLKKSVRGLVVVHPMTA 105 (123)
T ss_dssp HHHHHTTSCEEECSSSH
T ss_pred HHhhcccceeEecCchH
Confidence 46999999999999753
No 11
>2q3l_A Uncharacterized protein; SPOIIAA-like fold, structural genomics, joint center for STR genomics, JCSG, protein structure initiative; HET: MSE; 2.25A {Shewanella loihica pv-4} SCOP: c.13.2.2
Probab=33.31 E-value=1.1e+02 Score=20.39 Aligned_cols=80 Identities=9% Similarity=0.012 Sum_probs=52.7
Q ss_pred CCHHHHHHHHHHHhhcccCCCCeEEEEEecCcccCcCcccHHHHHHHHHhcChhhHhccceEEEEcCChHHHHHHHHhcc
Q 032490 46 LSVEVLKRYLSERVYPRLGKKAFTVLYVHTGVQRSENFAGISALRSIYDAIPANVKENLQAVYFVHPGLQARLFLATFGR 125 (139)
Q Consensus 46 ~d~e~ll~y~~~~~ld~~~~~~y~lVy~~tg~~~~~n~p~~~wl~~~y~~l~~~~kknLk~lyiVHPt~~~K~~~~~~~p 125 (139)
-|++.+..-+.. .++....++.-+.+..+.+..+ .++-+..-.. +..++.+...++=||=-.-|.+....+++|
T Consensus 33 ~d~~~l~~~l~~-~l~~~~~~~i~ll~~~~~f~G~----~~~a~~~d~k-~~~~h~~~~~RiAvV~d~~W~~~~~~~~~~ 106 (126)
T 2q3l_A 33 EDYEQMTPLLES-ALAGIKTPEIVALIDITELDGL----SLHAAWDDLK-LGLKHGKEFKRVAIIGQGELQEWATRVANW 106 (126)
T ss_dssp HHHHHHHHHHHH-HTTTCCSSCEEEEEEEEEEEEE----CHHHHHHHHH-HHHHHGGGEEEEEEECCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHHhCCCceEEEEEEecCCCCC----CHHHHHHHHH-hhhhHHhcCCEEEEEcChHHHHHHHHHHhh
Confidence 367776666655 3666666557676665554211 1222222222 445788999999999999999999999999
Q ss_pred hhccCC
Q 032490 126 LFFNGV 131 (139)
Q Consensus 126 fi~s~~ 131 (139)
|+..++
T Consensus 107 ~~~~ev 112 (126)
T 2q3l_A 107 FTPGEF 112 (126)
T ss_dssp HCSSEE
T ss_pred ccCCce
Confidence 865543
No 12
>3cpt_A Mitogen-activated protein kinase kinase 1- interacting protein 1; scaffold, complex, alpha/beta, endosome, membrane, lysosome; 1.90A {Homo sapiens} SCOP: d.110.7.1 PDB: 1sko_A 2zl1_A 1vet_A 1veu_A
Probab=24.58 E-value=1.2e+02 Score=21.49 Aligned_cols=35 Identities=17% Similarity=0.296 Sum_probs=24.2
Q ss_pred CcEEEeccCCCCCeEEEEEcccCCCcCCCHHHHHH
Q 032490 19 EIFKIHGRDKQGRKILRIIGKFFPARLLSVEVLKR 53 (139)
Q Consensus 19 ~ily~~G~D~~GrpVvvi~a~~~p~~~~d~e~ll~ 53 (139)
|+.--.=.|++|-||+=+.....|....+..-+=-
T Consensus 37 Gl~aI~ItDrDGVpi~kv~~~~~~e~~~r~s~lsT 71 (143)
T 3cpt_A 37 GLHAIVVSDRDGVPVIKVANDNAPEHALRPGFLST 71 (143)
T ss_dssp TEEEEEEECTTSCEEEEEECTTSCGGGGSHHHHHH
T ss_pred CeEEEEEECCCCcEEEEecCCCCchhhcccchhhh
Confidence 44433469999999999998887775555433333
No 13
>3kdg_A DNA mismatch repair protein MUTL; endonuclease, DNA damage, DNA repair, hydrolase; HET: DNA; 2.00A {Bacillus subtilis} PDB: 3gab_A* 3kdk_A*
Probab=22.06 E-value=29 Score=25.24 Aligned_cols=35 Identities=20% Similarity=0.148 Sum_probs=26.6
Q ss_pred cCCChhhhHHHHHhcCcEEEeccCCCCCeEEEEEc
Q 032490 4 QVVSESEQEELIDRLEIFKIHGRDKQGRKILRIIG 38 (139)
Q Consensus 4 ~~i~~~e~~~~i~~~~ily~~G~D~~GrpVvvi~a 38 (139)
+.++..|-...|+++.-+..-...+.|||+++-..
T Consensus 151 ~~Ls~~Em~~Ll~~L~~~~~p~~CpHGRPt~~~l~ 185 (197)
T 3kdg_A 151 RHLRNDEIKALLDDLRSTSDPFTCPHGRPIIIHHS 185 (197)
T ss_dssp CCCCHHHHHHHHHHHHHSSCTTBCTTSCBCEEEEE
T ss_pred CCCCHHHHHHHHHHHHcCCCCCcCCCCCcEEEEeC
Confidence 45667777777777777755588999999998664
Done!