Query 032491
Match_columns 139
No_of_seqs 103 out of 462
Neff 6.7
Searched_HMMs 29240
Date Tue Mar 26 00:22:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032491.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032491hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4efa_E V-type proton ATPase su 100.0 1.3E-35 4.3E-40 232.2 14.4 130 1-139 99-228 (233)
2 3lg8_A A-type ATP synthase sub 100.0 7.4E-33 2.5E-37 194.2 -4.4 103 17-134 3-106 (106)
3 3v6i_A V-type ATP synthase sub 99.9 8E-27 2.7E-31 176.8 13.5 106 1-135 82-187 (187)
4 2dm9_A V-type ATP synthase sub 99.9 1.8E-23 6.1E-28 157.1 11.5 113 1-135 86-198 (198)
5 2wss_S ATP synthase subunit O, 83.0 0.04 1.4E-06 40.9 -4.3 32 92-125 155-186 (190)
6 1nwz_A PYP, photoactive yellow 45.9 17 0.00058 25.0 3.1 24 96-119 27-50 (125)
7 1mzu_A PPR; photoactive yellow 44.5 18 0.00062 25.1 3.1 24 96-119 32-55 (129)
8 2xzm_3 RPS7E, 40S ribosomal pr 42.8 34 0.0012 25.6 4.6 58 18-76 122-187 (197)
9 3hfe_A Potassium voltage-gated 40.7 19 0.00065 19.0 2.0 16 111-126 5-20 (31)
10 3u5c_H RP30, RP40, 40S ribosom 39.3 26 0.00089 26.1 3.4 58 17-75 120-185 (190)
11 3fx7_A Putative uncharacterize 37.3 19 0.00063 23.9 2.1 27 2-28 54-80 (94)
12 3l7h_A RE64145P, roadblock; LC 33.0 43 0.0015 22.0 3.4 33 96-129 18-50 (97)
13 2ld7_B Paired amphipathic heli 29.2 52 0.0018 20.5 3.1 23 2-28 15-37 (75)
14 2jsx_A Protein NAPD; TAT, proo 28.9 81 0.0028 20.4 4.2 19 38-56 9-27 (95)
15 4hi4_A Aerotaxis transducer AE 28.6 50 0.0017 20.5 3.1 24 95-118 14-37 (121)
16 2hz5_A Dynein light chain 2A, 25.7 61 0.0021 21.6 3.2 32 96-128 27-58 (106)
17 3a0s_A Sensor protein; PAS-fol 25.6 69 0.0024 17.4 3.1 21 97-117 3-23 (96)
18 3bpj_A Eukaryotic translation 25.5 1.3E+02 0.0044 18.9 5.7 45 7-61 25-69 (80)
19 2dpr_A CON-T(K7GLA); conantoxi 23.0 50 0.0017 16.3 1.7 14 17-30 3-16 (26)
20 1r62_A Nitrogen regulation pro 21.0 1E+02 0.0036 19.9 3.7 32 15-46 45-78 (160)
21 3a0y_A Sensor protein; ATP-LID 20.4 1.6E+02 0.0054 18.8 4.5 28 18-45 47-75 (152)
No 1
>4efa_E V-type proton ATPase subunit E; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_J 2kz9_A
Probab=100.00 E-value=1.3e-35 Score=232.23 Aligned_cols=130 Identities=34% Similarity=0.539 Sum_probs=117.0
Q ss_pred CHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHhCCCcEEEEeccccHHHHHHHHHHHHHHHHHhhCCCCCeEEeccccC
Q 032491 1 MMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIY 80 (139)
Q Consensus 1 l~~~a~~~L~~~~~~~~~Y~~~L~~LI~qa~~~l~e~~v~V~~~~~D~~lv~~~l~~~~~~~~~~~~~~~~~i~vd~~~~ 80 (139)
+|++|+++|.++++|+..|+++|++||.||+..+.+++++|+|||.|.++|+++++++..+|++.+|.......++...+
T Consensus 99 v~~~a~~~L~~~~~d~~~Y~~lL~~Li~eal~~l~e~~v~V~~~~~D~~lv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (233)
T 4efa_E 99 IFEETKEKLSGIANNRDEYKPILQSLIVEALLKLLEPKAIVKALERDVDLIESMKDDIMREYGEKAQRAPLEEIVISNDY 178 (233)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHCCSEEEEEECTTTHHHHTTSHHHHHHHHHHHTTTSCCCEEEECSSC
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhcCCCcEEEEecHhhHHHHHHHHHHHHHHHHHHhCCCCcccccccccc
Confidence 58999999999999988999999999999999999999999999999999999999999999999887544444444566
Q ss_pred CCCCCCCCCCCCCCccceEEEEecCCcEEEcccHHHHHHHHHHhhhHHHHHHhcCCCCC
Q 032491 81 LPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQVAA 139 (139)
Q Consensus 81 L~~~~~~~~~~~~~~~GGVvv~s~dG~I~vdNTle~RL~~~~~~~lp~Ir~~LFg~~~~ 139 (139)
|++ .+|+|||+|+|.||+|+|||||++||++++++++|+||+.|||.||+
T Consensus 179 l~~---------~~~~GGvil~s~dGkI~vdNTle~RL~~~~~~~lp~Ir~~LFG~~~~ 228 (233)
T 4efa_E 179 LNK---------DLVSGGVVVSNASDKIEINNTLEERLKLLSEEALPAIRLELYGPSKT 228 (233)
T ss_dssp CCT---------TTCSSEEEEECTTSCCEEEEEHHHHHHHHHHHHHHHHHHHHSCCC--
T ss_pred CCc---------ccccCceEEEECCCCEEEECCHHHHHHHHHHHHHHHHHHHHCCcCCC
Confidence 654 38999999999999999999999999999999999999999999984
No 2
>3lg8_A A-type ATP synthase subunit E; archaea, peripheral stalk, hydrolase, structural protein, TR protein; 4.10A {Methanocaldococcus jannaschii}
Probab=99.96 E-value=7.4e-33 Score=194.16 Aligned_cols=103 Identities=21% Similarity=0.317 Sum_probs=95.7
Q ss_pred hhHHHHHHHHHHHHHHHhCCCcEEEEeccccHHHHHHH-HHHHHHHHHHhhCCCCCeEEeccccCCCCCCCCCCCCCCCc
Q 032491 17 NSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESV-LESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSC 95 (139)
Q Consensus 17 ~~Y~~~L~~LI~qa~~~l~e~~v~V~~~~~D~~lv~~~-l~~~~~~~~~~~~~~~~~i~vd~~~~L~~~~~~~~~~~~~~ 95 (139)
++|+++|++||.||+..+++++++|+||++|.++|+++ ++++.++|++++|. ++++++++ | .+|
T Consensus 3 ~~Y~~lL~~LI~q~~~~l~e~~v~v~~r~~D~~lv~~~~l~~~~~e~~~~~g~-~~~v~~~~-------~-------~~~ 67 (106)
T 3lg8_A 3 PEYKDKLIKLIKDGAISLGGGELIVRLNKRDMELIDDSTLWNLEKEVENATKK-VTVLKKGE-------P-------VDI 67 (106)
T ss_dssp CSTTTHHHHHHHHHHHHHTCSSCCCBCSSHHHHTTTTSSCTTTTTTHHHHSSS-CCCCCCCC-------C-------CSS
T ss_pred cHHHHHHHHHHHHHHHHcCCCcEEEEECHhhHHHHHHhhHHHHHHHHHHHhCC-eEEEEeCC-------C-------ccc
Confidence 47999999999999999999999999999999999999 99999999999997 56665542 2 389
Q ss_pred cceEEEEecCCcEEEcccHHHHHHHHHHhhhHHHHHHhc
Q 032491 96 SGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLV 134 (139)
Q Consensus 96 ~GGVvv~s~dG~I~vdNTle~RL~~~~~~~lp~Ir~~LF 134 (139)
+|||++++.||+|+|||||++||++++++++|+||+.||
T Consensus 68 ~GGvil~s~dg~I~vdNTle~rL~~l~~~~~~eI~~~LF 106 (106)
T 3lg8_A 68 AGGCIIETADGLKSLDNSLEAIFNRNLNVIRARITEKLF 106 (106)
T ss_dssp SCBCBCSSCSCBCCCCSHHHHSHHHHHHHHHHHTTTSCC
T ss_pred cccEEEEeCCCCEEEECCHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999
No 3
>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E 3j0j_J
Probab=99.94 E-value=8e-27 Score=176.79 Aligned_cols=106 Identities=19% Similarity=0.296 Sum_probs=93.5
Q ss_pred CHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHhCCCcEEEEeccccHHHHHHHHHHHHHHHHHhhCCCCCeEEeccccC
Q 032491 1 MMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIY 80 (139)
Q Consensus 1 l~~~a~~~L~~~~~~~~~Y~~~L~~LI~qa~~~l~e~~v~V~~~~~D~~lv~~~l~~~~~~~~~~~~~~~~~i~vd~~~~ 80 (139)
+|++|+++|.+++++ +.|+++|.+||.||+..+.+++++| |||.|.++++.++++. | +++..+
T Consensus 82 v~~~a~~~L~~~~~~-~~Y~~~L~~Li~ea~~~l~~~~~vv-~~~~D~~~v~~~~~~~--------~---~~~~~~---- 144 (187)
T 3v6i_A 82 VRRRVREALEALPQK-PEWPEVVRKLALEALEALPGAKALV-ANPEDLPHLEALARER--------G---VELQAE---- 144 (187)
T ss_dssp HHHHHHHHHHHGGGS-TTHHHHHHHHHHHHHHHCTTCCEEE-ECTTTHHHHHHHHHHH--------T---CEEEEC----
T ss_pred HHHHHHHHHHhhhCC-ccHHHHHHHHHHHHHHHcCCCCeEE-ECHHHHHHHHHHHHhc--------C---eeeCCC----
Confidence 588999999999988 5799999999999999999999866 9999999999887641 2 333221
Q ss_pred CCCCCCCCCCCCCCccceEEEEecCCcEEEcccHHHHHHHHHHhhhHHHHHHhcC
Q 032491 81 LPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVS 135 (139)
Q Consensus 81 L~~~~~~~~~~~~~~~GGVvv~s~dG~I~vdNTle~RL~~~~~~~lp~Ir~~LFg 135 (139)
.+|.|||+|+++||+|+|||||++||+.++++++|+|++.|||
T Consensus 145 ------------~~~~GGvil~~~dG~I~vdnTle~rL~~~~~~~~~~I~~~LFg 187 (187)
T 3v6i_A 145 ------------PALRLGVRAVGAEGKTQVENSLLARLDRAWDALSSKVAQALWG 187 (187)
T ss_dssp ------------TTCCSEEEEECTTSSCEEEEEHHHHHHHHHHHHHHHHHHHHC-
T ss_pred ------------CcccCceEEEeCCCCEEEECCHHHHHHHHHHHhHHHHHHHhcC
Confidence 2889999999999999999999999999999999999999998
No 4
>2dm9_A V-type ATP synthase subunit E; A-ATPase, structural genomics, NPPSFA, national project on P structural and functional analyses; 1.85A {Pyrococcus horikoshii} SCOP: d.81.4.1 PDB: 2dma_A 4dt0_A
Probab=99.90 E-value=1.8e-23 Score=157.11 Aligned_cols=113 Identities=25% Similarity=0.379 Sum_probs=100.4
Q ss_pred CHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHhCCCcEEEEeccccHHHHHHHHHHHHHHHHHhhCCCCCeEEeccccC
Q 032491 1 MMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIY 80 (139)
Q Consensus 1 l~~~a~~~L~~~~~~~~~Y~~~L~~LI~qa~~~l~e~~v~V~~~~~D~~lv~~~l~~~~~~~~~~~~~~~~~i~vd~~~~ 80 (139)
+|..|++.|.+++ .+.|+++|.+||.+++..+.+++++|+|+|.|.+.+++.++++...|+ ++.++++.
T Consensus 86 ~~~~a~~~l~~l~--~~~y~~~l~~li~e~~~~~~~~~v~i~v~~~D~~~v~~~~~~~~~~~~------~~~l~i~~--- 154 (198)
T 2dm9_A 86 VLEEVKRRLETMS--EDEYFESVKALLKEAIKELNEKKVRVMSNEKTLGLIASRIEEIKSELG------DVSIELGE--- 154 (198)
T ss_dssp HHHHHHHHHHHCC--HHHHHHHHHHHHHHHHHHHTCSEEEEECCHHHHHHHHHTHHHHHHHCT------TCEEEECC---
T ss_pred HHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHcCCCCEEEEECHhHHHHHHHHHHHHHHHhc------CceEEECC---
Confidence 3678999999964 568999999999999999988999999999999999999998877775 24666652
Q ss_pred CCCCCCCCCCCCCCccceEEEEecCCcEEEcccHHHHHHHHHHhhhHHHHHHhcC
Q 032491 81 LPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVS 135 (139)
Q Consensus 81 L~~~~~~~~~~~~~~~GGVvv~s~dG~I~vdNTle~RL~~~~~~~lp~Ir~~LFg 135 (139)
| ..+.|||+|.+++|+|.|||||++||+.+++.++|.|+++|||
T Consensus 155 ----~-------~~~~GG~~i~~~~G~i~id~tl~~rl~~~~~~l~~~i~~~LF~ 198 (198)
T 2dm9_A 155 ----T-------VDTMGGVIVETEDGRIRIDNTFEARMERFEGEIRSTIAKVLFG 198 (198)
T ss_dssp ----C-------CCCSSEEEEEETTSSCEEEEEHHHHHHHTHHHHHHHHHHHHHC
T ss_pred ----C-------CCccCceEEEeCCCCEEEECcHHHHHHHHHHHhHHHHHHHhcC
Confidence 1 2789999999999999999999999999999999999999997
No 5
>2wss_S ATP synthase subunit O, mitochondrial; hydrogen ION transport, ATP synthesis, phosphoprotein, UBL conjugation, transit peptide; HET: ANP ADP; 3.20A {Bos taurus} PDB: 2bo5_A 2jmx_A
Probab=83.01 E-value=0.04 Score=40.92 Aligned_cols=32 Identities=19% Similarity=0.333 Sum_probs=14.3
Q ss_pred CCCccceEEEEecCCcEEEcccHHHHHHHHHHhh
Q 032491 92 GPSCSGGVVVASRDGKIVCENTLDARLDVVFRKK 125 (139)
Q Consensus 92 ~~~~~GGVvv~s~dG~I~vdNTle~RL~~~~~~~ 125 (139)
|.+.+||++|... .-++|.|+.+||+++.+.+
T Consensus 155 DpsLiGG~~v~vg--d~viD~Sv~~~L~~l~~~L 186 (190)
T 2wss_S 155 DPSIMGGMIVRIG--EKYVDMSAKTKIQKLSRAM 186 (190)
T ss_dssp ----------------CCTTTTTTTTTTTTCTTT
T ss_pred ChhHhCeEEEEEC--CEEEehhHHHHHHHHHHHH
Confidence 5688999999994 4567999999998766554
No 6
>1nwz_A PYP, photoactive yellow protein; PAS, LOV, GAF, domains fold, signaling protein; HET: HC4; 0.82A {Halorhodospira halophila} SCOP: d.110.3.1 PDB: 1kou_A* 1ot9_A* 1otb_A* 1s4r_A* 1s4s_A* 1ts0_A* 1ts6_A* 1ts7_A* 1ts8_A* 1uwn_X* 1uwp_X* 2d01_A* 2phy_A* 2pyp_A* 2pyr_A* 2qj5_A* 2qj7_A* 2qws_A* 2zoh_A* 2zoi_A* ...
Probab=45.90 E-value=17 Score=25.01 Aligned_cols=24 Identities=21% Similarity=0.338 Sum_probs=21.4
Q ss_pred cceEEEEecCCcEEEcccHHHHHH
Q 032491 96 SGGVVVASRDGKIVCENTLDARLD 119 (139)
Q Consensus 96 ~GGVvv~s~dG~I~vdNTle~RL~ 119 (139)
.=||++.+.+|+|+.=|.+..++.
T Consensus 27 ~~Gii~lD~~g~I~~~N~~~e~~s 50 (125)
T 1nwz_A 27 AFGAIQLDGDGNILQYNAAEGDIT 50 (125)
T ss_dssp SSEEEEEETTCBEEEECHHHHHHH
T ss_pred CceEEEECCCCEEEEEHHHHHHHh
Confidence 359999999999999999998873
No 7
>1mzu_A PPR; photoactive yellow protein, PAS, PYP, signaling protein; HET: HC4; 2.00A {Rhodospirillum centenum} SCOP: d.110.3.1
Probab=44.50 E-value=18 Score=25.09 Aligned_cols=24 Identities=25% Similarity=0.318 Sum_probs=21.3
Q ss_pred cceEEEEecCCcEEEcccHHHHHH
Q 032491 96 SGGVVVASRDGKIVCENTLDARLD 119 (139)
Q Consensus 96 ~GGVvv~s~dG~I~vdNTle~RL~ 119 (139)
.=||++.+.+|+|+.=|.+..++.
T Consensus 32 ~~GiivlD~dg~I~~~N~~~e~is 55 (129)
T 1mzu_A 32 PVGAIQVDGSGVIHRYNRTESRLS 55 (129)
T ss_dssp SSEEEEEETTCBEEEECHHHHHHH
T ss_pred CceEEEECCCCeEEEEHHHHHHHh
Confidence 349999999999999999998873
No 8
>2xzm_3 RPS7E, 40S ribosomal protein RPS7E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_3
Probab=42.79 E-value=34 Score=25.59 Aligned_cols=58 Identities=19% Similarity=0.277 Sum_probs=42.5
Q ss_pred hHHHHHHHHHHHHH-------HHhCCC-cEEEEeccccHHHHHHHHHHHHHHHHHhhCCCCCeEEec
Q 032491 18 SYKKLLKGLIVQSL-------LRLKEP-AVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVD 76 (139)
Q Consensus 18 ~Y~~~L~~LI~qa~-------~~l~e~-~v~V~~~~~D~~lv~~~l~~~~~~~~~~~~~~~~~i~vd 76 (139)
-|..+|.+|+-=|- ..+++. .+.|++.++|...++.-++.+...|+.++|+ ++.++..
T Consensus 122 V~~aiLeDLv~PaeIvGkRir~~~DGs~~~KV~Ld~~d~~~ve~Kletf~~VykkLTGk-dV~feFp 187 (197)
T 2xzm_3 122 VYDALLDDLLLPSTLIGKRIRARLDGTSFYRIQLDQNDRDFLEEKLDAITHIYKTVTTR-EVTFEFK 187 (197)
T ss_dssp HHHHHHHHHSTTSCCSEEEEEECSSSCEECCEEEESTTHHHHHHHHHHHHHHHHHHSCC-BCCEEEE
T ss_pred hHHHHHHHhccchheeeeEEEEecCCCEEEEEEeCHHHhcccccchHHHHHHHHHHhCC-CEEEEEc
Confidence 36677777664321 122233 3468889999999999999999999999998 7777764
No 9
>3hfe_A Potassium voltage-gated channel subfamily KQT MEM; trimer, atrial fibrillation, cell membrane, cytoplasmic VESI deafness, disease mutation; 1.70A {Homo sapiens} PDB: 3hfc_A
Probab=40.73 E-value=19 Score=19.02 Aligned_cols=16 Identities=44% Similarity=0.420 Sum_probs=13.4
Q ss_pred cccHHHHHHHHHHhhh
Q 032491 111 ENTLDARLDVVFRKKL 126 (139)
Q Consensus 111 dNTle~RL~~~~~~~l 126 (139)
.||.-+||.++.+++.
T Consensus 5 ~nTIGaRLnRvE~k~t 20 (31)
T 3hfe_A 5 SNTIGARLNRVEDKVT 20 (31)
T ss_dssp CCSHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHH
Confidence 5899999999988653
No 10
>3u5c_H RP30, RP40, 40S ribosomal protein S7-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_H
Probab=39.25 E-value=26 Score=26.13 Aligned_cols=58 Identities=14% Similarity=0.100 Sum_probs=42.1
Q ss_pred hhHHHHHHHHHHHH-------HHHhCCCc-EEEEeccccHHHHHHHHHHHHHHHHHhhCCCCCeEEe
Q 032491 17 NSYKKLLKGLIVQS-------LLRLKEPA-VLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIV 75 (139)
Q Consensus 17 ~~Y~~~L~~LI~qa-------~~~l~e~~-v~V~~~~~D~~lv~~~l~~~~~~~~~~~~~~~~~i~v 75 (139)
+-|..+|.+|+-=+ -..+++.. +.|+..++|..-++.-++.+...|+.+||+ ++..+.
T Consensus 120 aVhdaiLeDLv~P~eIVGKRir~rlDGskl~KV~LD~~~~~~ve~Kl~tfs~VYkkLTgk-dv~FeF 185 (190)
T 3u5c_H 120 AVHDKILEDLVFPTEIVGKRVRYLVGGNKIQKVLLDSKDVQQIDYKLESFQAVYNKLTGK-QIVFEI 185 (190)
T ss_dssp HHHHHHHHHHSCSSCEEEEEEEECSSSCEEEEEEECSSSTHHHHTTHHHHHHHHHHHHSC-EEEEEC
T ss_pred HHHHHHHhhcccchheeeeEEEEecCCCEEEEEEECHHHhcccchhhHHHHHHHHHhhCC-cEEEEe
Confidence 35777887776422 11233333 458889999999999999999999999998 555544
No 11
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=37.31 E-value=19 Score=23.94 Aligned_cols=27 Identities=11% Similarity=0.054 Sum_probs=20.9
Q ss_pred HHHHHHHHHhhccChhhHHHHHHHHHH
Q 032491 2 MEAASKEVLNVSRDHNSYKKLLKGLIV 28 (139)
Q Consensus 2 ~~~a~~~L~~~~~~~~~Y~~~L~~LI~ 28 (139)
|++..+.|..+..+.++|-++|+.+|.
T Consensus 54 fe~l~s~l~~f~e~a~e~vp~L~~~i~ 80 (94)
T 3fx7_A 54 LDNLKSTFNEFDEAAQEQIAWLKERIR 80 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHhHHHHHHHH
Confidence 667777788887776788888888874
No 12
>3l7h_A RE64145P, roadblock; LC7, KM23, dynein, light chain, hydrolase, protei transport; 1.95A {Drosophila melanogaster} SCOP: d.110.7.1 PDB: 3l9k_A 1z09_A 2e8j_A 1y4o_A
Probab=32.97 E-value=43 Score=22.00 Aligned_cols=33 Identities=24% Similarity=0.410 Sum_probs=22.2
Q ss_pred cceEEEEecCCcEEEcccHHHHHHHHHHhhhHHH
Q 032491 96 SGGVVVASRDGKIVCENTLDARLDVVFRKKLPEI 129 (139)
Q Consensus 96 ~GGVvv~s~dG~I~vdNTle~RL~~~~~~~lp~I 129 (139)
.=|+++.+.+|..+ --||+...-.-+..++..+
T Consensus 18 V~G~iI~n~~G~pi-rst~d~~~~~~yA~~~~~L 50 (97)
T 3l7h_A 18 VVGTIVVNNEGIPV-KSTLDNTTTVQYAGLMSQL 50 (97)
T ss_dssp EEEEEEEETTSCEE-EESSCHHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCEe-EEeCChHHHHHHHHHHHHH
Confidence 46788888899654 4477777666666655554
No 13
>2ld7_B Paired amphipathic helix protein SIN3A; transcription; NMR {Mus musculus}
Probab=29.20 E-value=52 Score=20.53 Aligned_cols=23 Identities=22% Similarity=0.608 Sum_probs=16.2
Q ss_pred HHHHHHHHHhhccChhhHHHHHHHHHH
Q 032491 2 MEAASKEVLNVSRDHNSYKKLLKGLIV 28 (139)
Q Consensus 2 ~~~a~~~L~~~~~~~~~Y~~~L~~LI~ 28 (139)
|+.++++| ++++.|.++|+-|-.
T Consensus 15 f~kVK~~l----~~~~~Y~eFLk~lnl 37 (75)
T 2ld7_B 15 FDKVRKAL----RSAEAYENFLRCLVI 37 (75)
T ss_dssp HHHHHHHH----CSHHHHHHHHHHHHH
T ss_pred HHHHHHHc----CCHHHHHHHHHHHHH
Confidence 45666666 356789999997654
No 14
>2jsx_A Protein NAPD; TAT, proofreading, cytoplasm, chaperone; NMR {Escherichia coli K12} PDB: 2pq4_A
Probab=28.88 E-value=81 Score=20.43 Aligned_cols=19 Identities=5% Similarity=0.274 Sum_probs=15.0
Q ss_pred cEEEEeccccHHHHHHHHH
Q 032491 38 AVLLRCRKDDHHLVESVLE 56 (139)
Q Consensus 38 ~v~V~~~~~D~~lv~~~l~ 56 (139)
-++|+|+|...+-|.+.|.
T Consensus 9 slvV~~~p~~~~~V~~~L~ 27 (95)
T 2jsx_A 9 SLVVQAKSERISDISTQLN 27 (95)
T ss_dssp EEEEEECTTSHHHHHHHHT
T ss_pred EEEEEECCCCHHHHHHHHH
Confidence 3689999999888876654
No 15
>4hi4_A Aerotaxis transducer AER2; PAS domain, diatomic GAS sensor, signaling protein; HET: HEM GOL; 2.30A {Pseudomonas aeruginosa}
Probab=28.56 E-value=50 Score=20.55 Aligned_cols=24 Identities=25% Similarity=0.332 Sum_probs=18.3
Q ss_pred ccceEEEEecCCcEEEcccHHHHH
Q 032491 95 CSGGVVVASRDGKIVCENTLDARL 118 (139)
Q Consensus 95 ~~GGVvv~s~dG~I~vdNTle~RL 118 (139)
..=||++.+.+|+|+.=|.--.+|
T Consensus 14 ~~~gviv~D~~g~I~~~N~a~~~l 37 (121)
T 4hi4_A 14 VSANVMIADNDLNIIYMNRTVSEM 37 (121)
T ss_dssp SSSEEEEEETTCBEEEECHHHHHH
T ss_pred CCccEEEEcCCCeEEEecHHHHHH
Confidence 346999999999999777644443
No 16
>2hz5_A Dynein light chain 2A, cytoplasmic; DNLC2A, transport protein; 2.10A {Homo sapiens} SCOP: d.110.7.1 PDB: 2b95_A
Probab=25.71 E-value=61 Score=21.62 Aligned_cols=32 Identities=19% Similarity=0.396 Sum_probs=19.1
Q ss_pred cceEEEEecCCcEEEcccHHHHHHHHHHhhhHH
Q 032491 96 SGGVVVASRDGKIVCENTLDARLDVVFRKKLPE 128 (139)
Q Consensus 96 ~GGVvv~s~dG~I~vdNTle~RL~~~~~~~lp~ 128 (139)
.=|+++.+.+| +.+--|++.....-+..++..
T Consensus 27 V~G~iIln~~G-~pIrSt~d~~~~~~yA~li~~ 58 (106)
T 2hz5_A 27 VQGIIVVNTEG-IPIKSTMDNPTTTQYASLMHS 58 (106)
T ss_dssp EEEEEEECTTC-CEEEESSCHHHHHHHHHHHHH
T ss_pred ceEEEEEcCCC-CeEEEecCchHHHHHHHHHHH
Confidence 35667778888 556556666555555544443
No 17
>3a0s_A Sensor protein; PAS-fold, kinase, phosphoprotein, transferase, two-component regulatory system; HET: PG4 PGE; 1.47A {Thermotoga maritima} PDB: 3a0v_A*
Probab=25.55 E-value=69 Score=17.42 Aligned_cols=21 Identities=24% Similarity=0.367 Sum_probs=15.8
Q ss_pred ceEEEEecCCcEEEcccHHHH
Q 032491 97 GGVVVASRDGKIVCENTLDAR 117 (139)
Q Consensus 97 GGVvv~s~dG~I~vdNTle~R 117 (139)
-||++.+.+|+|+.=|.--.+
T Consensus 3 ~~i~~~d~~g~i~~~N~~~~~ 23 (96)
T 3a0s_A 3 TAIITLSKDGRITEWNKKAEQ 23 (96)
T ss_dssp CEEEEEETTSBEEEECHHHHH
T ss_pred ceEEEEcCCCCEeehhHHHHH
Confidence 489999999999876654333
No 18
>3bpj_A Eukaryotic translation initiation factor 3 subuni; EIF3S1, structural genomics, limited proteolysis, phosphoprotein, protein biosynthesis; 1.85A {Homo sapiens}
Probab=25.52 E-value=1.3e+02 Score=18.85 Aligned_cols=45 Identities=18% Similarity=0.252 Sum_probs=32.2
Q ss_pred HHHHhhccChhhHHHHHHHHHHHHHHHhCCCcEEEEeccccHHHHHHHHHHHHHH
Q 032491 7 KEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEE 61 (139)
Q Consensus 7 ~~L~~~~~~~~~Y~~~L~~LI~qa~~~l~e~~v~V~~~~~D~~lv~~~l~~~~~~ 61 (139)
.+|..+.+. ..|..+++.||.+.+.-|. ..|...|...+..+..+
T Consensus 25 ~kl~~~~ks-~~y~~f~~~lir~l~~~L~---------~~dikkv~s~l~~l~nE 69 (80)
T 3bpj_A 25 DKITQYEKS-LYYASFLEVLVRDVCISLE---------IDDLKKITNSLTVLCSE 69 (80)
T ss_dssp HHHGGGTTS-TTHHHHHHHHHHHHHTTSC---------HHHHHHHHHHHHHHHHH
T ss_pred HHHHhccCC-hhHHHHHHHHHHHHHccCC---------HHHHHHHHHHHHHHHHH
Confidence 456665545 4899999999999977654 56677777776665543
No 19
>2dpr_A CON-T(K7GLA); conantoxin, nmdar antagonist, GLA-containing, metal B protein; HET: CGU; 1.70A {Synthetic} PDB: 1ont_A*
Probab=23.01 E-value=50 Score=16.28 Aligned_cols=14 Identities=21% Similarity=0.470 Sum_probs=9.9
Q ss_pred hhHHHHHHHHHHHH
Q 032491 17 NSYKKLLKGLIVQS 30 (139)
Q Consensus 17 ~~Y~~~L~~LI~qa 30 (139)
++|+++|++|-..-
T Consensus 3 eeyqemlenlreae 16 (26)
T 2dpr_A 3 EEYQEMLENLREAE 16 (26)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 47888888875443
No 20
>1r62_A Nitrogen regulation protein NR(II); PII, histidine kinase, two component system, transfera; 1.60A {Escherichia coli} SCOP: d.122.1.3
Probab=20.97 E-value=1e+02 Score=19.85 Aligned_cols=32 Identities=22% Similarity=0.404 Sum_probs=19.8
Q ss_pred ChhhHHHHHHHHHHHHHHHhC--CCcEEEEeccc
Q 032491 15 DHNSYKKLLKGLIVQSLLRLK--EPAVLLRCRKD 46 (139)
Q Consensus 15 ~~~~Y~~~L~~LI~qa~~~l~--e~~v~V~~~~~ 46 (139)
++..-..+|.+||..|+.... .+.|.|.+...
T Consensus 45 d~~~l~~il~nLl~NAik~~~~~~~~I~i~~~~~ 78 (160)
T 1r62_A 45 DPDQIEQVLLNIVRNALQALGPEGGEIILRTRTA 78 (160)
T ss_dssp CHHHHHHHHHHHHHHHHHHHGGGCEEEEEEEEEE
T ss_pred CHHHHHHHHHHHHHHHHHHhhccCCeEEEEEecc
Confidence 444566777777777777665 44555555443
No 21
>3a0y_A Sensor protein; ATP-LID, kinase, phosphoprotein, transferase, two-component regulatory system; 1.57A {Thermotoga maritima} PDB: 3a0t_A* 3a0x_A 3a0w_A 3a0z_A
Probab=20.38 E-value=1.6e+02 Score=18.77 Aligned_cols=28 Identities=11% Similarity=0.217 Sum_probs=14.5
Q ss_pred hHHHHHHHHHHHHHHHh-CCCcEEEEecc
Q 032491 18 SYKKLLKGLIVQSLLRL-KEPAVLLRCRK 45 (139)
Q Consensus 18 ~Y~~~L~~LI~qa~~~l-~e~~v~V~~~~ 45 (139)
.-..+|.+||..|+..- ..+.|.|.+..
T Consensus 47 ~l~~il~nll~NAi~~~~~~~~I~i~~~~ 75 (152)
T 3a0y_A 47 RIKQVLINLVQNAIEATGENGKIKITSED 75 (152)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEEEEe
Confidence 44555666666666555 23344554443
Done!