BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 032492
         (139 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1ZSO|A Chain A, Hypothetical Protein From Plasmodium Falciparum
 pdb|1ZSO|B Chain B, Hypothetical Protein From Plasmodium Falciparum
          Length = 164

 Score = 42.0 bits (97), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/113 (23%), Positives = 47/113 (41%), Gaps = 6/113 (5%)

Query: 3   NCMLMISADLENLTNLQPQGGCDDPNFSYFFKLKCGCGELSQKETCVSLAETLPTQGGKG 62
           N ++ I A+LEN+  L     CDD  + + F ++     L++        + L     +G
Sbjct: 11  NTVVRIKAELENVKRL----FCDDE-YLWIFNIRDSTSSLTRDNIQFRKTDILEIPNSRG 65

Query: 63  TTNLIQKCKFCGREGTVTMIPGRGKPLTQEAAQSGGFSPLMLFDCRGYEPVDF 115
           T N   K     +  T+  +  +    + E   +  +     F+CRG E +DF
Sbjct: 66  TANFXIKWTEYPKYSTINFVNTKN-SCSYEEVNNNEWRDFASFECRGIELIDF 117


>pdb|3ESG|A Chain A, Crystal Structure Of Hutd From Pseudomonas Fluorescens
           Sbw25
 pdb|3ESG|B Chain B, Crystal Structure Of Hutd From Pseudomonas Fluorescens
           Sbw25
          Length = 193

 Score = 27.3 bits (59), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 15/43 (34%), Positives = 20/43 (46%)

Query: 71  KFCGREGTVTMIPGRGKPLTQEAAQSGGFSPLMLFDCRGYEPV 113
            F G +  +T+I G G  LT +  +  G  PL  F  RG   V
Sbjct: 62  SFAGYQRVITVIQGAGMVLTVDGEEQRGLLPLQPFAFRGDSQV 104


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.140    0.455 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,320,219
Number of Sequences: 62578
Number of extensions: 171147
Number of successful extensions: 333
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 332
Number of HSP's gapped (non-prelim): 4
length of query: 139
length of database: 14,973,337
effective HSP length: 89
effective length of query: 50
effective length of database: 9,403,895
effective search space: 470194750
effective search space used: 470194750
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 46 (22.3 bits)