BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032492
(139 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q3B8G0|CA123_XENLA UPF0587 protein C1orf123 homolog OS=Xenopus laevis PE=2 SV=1
Length = 160
Score = 99.8 bits (247), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 48/125 (38%), Positives = 76/125 (60%), Gaps = 7/125 (5%)
Query: 1 MVNCMLMISADLENLTNLQPQGGCDDPNFSYFFKLKCG-CGELSQKETCVSLAETLPTQG 59
MV L A LENLT L+P G +F +F KLKCG CGE+S K ++L +++P +G
Sbjct: 1 MVKFALQFKASLENLTQLRPHG----EDFRWFLKLKCGNCGEVSDKWQYITLMDSVPLKG 56
Query: 60 GKGTTNLIQKCKFCGREGTVTMIPGRGKPLTQEAAQSGGFSPLMLFDCRGYEPVDFVFGV 119
G+G+ +++Q+CK C RE ++ ++ P E +++ F ++ F+CRG EP+DF
Sbjct: 57 GRGSASMVQRCKLCSRENSIDILAASLHPYNAEDSET--FKTIVEFECRGLEPIDFQPQA 114
Query: 120 GWKVE 124
G+ E
Sbjct: 115 GFAAE 119
>sp|Q9NWV4|CA123_HUMAN UPF0587 protein C1orf123 OS=Homo sapiens GN=C1orf123 PE=1 SV=1
Length = 160
Score = 96.3 bits (238), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 48/127 (37%), Positives = 76/127 (59%), Gaps = 7/127 (5%)
Query: 1 MVNCMLMISADLENLTNLQPQGGCDDPNFSYFFKLKCG-CGELSQKETCVSLAETLPTQG 59
M L + A LEN+TNL+P G +F ++ K+KCG CGE+S K + L +++ +G
Sbjct: 1 MGKIALQLKATLENITNLRPVG----EDFRWYLKMKCGNCGEISDKWQYIRLMDSVALKG 56
Query: 60 GKGTTNLIQKCKFCGREGTVTMIPGRGKPLTQEAAQSGGFSPLMLFDCRGYEPVDFVFGV 119
G+G+ +++QKCK C RE ++ ++ KP E ++ F ++ F+CRG EPVDF
Sbjct: 57 GRGSASMVQKCKLCARENSIEILSSTIKPYNAEDNEN--FKTIVEFECRGLEPVDFQPQA 114
Query: 120 GWKVESV 126
G+ E V
Sbjct: 115 GFAAEGV 121
>sp|A7SJ66|U587_NEMVE UPF0587 protein v1g245604 OS=Nematostella vectensis GN=v1g245604
PE=3 SV=1
Length = 159
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 50/136 (36%), Positives = 77/136 (56%), Gaps = 8/136 (5%)
Query: 1 MVNCMLMISADLENLTNLQPQGGCDDPNFSYFFKLKC-GCGELSQKETCVSLAETLPTQG 59
MV L + A+LEN+TNL+ +G +F ++ LKC CGE++++ + L E+ P +G
Sbjct: 1 MVRIGLQLKANLENVTNLKAEG----EDFRWYLMLKCMNCGEVTKQWVYMCLMESQPVKG 56
Query: 60 GKGTTNLIQKCKFCGREGTVTMIPGRGKPLTQEAAQSGGFSPLMLFDCRGYEPVDFVFGV 119
G+G + + KCK C RE +V ++ P A+ +G F ++ FDCRG EP DF
Sbjct: 57 GRGYAHFVSKCKLCHRENSVDIMKDSIHPYL--ASHNGKFHTIVSFDCRGVEPTDFSPRT 114
Query: 120 GWKVESVSFYSCPFPI 135
GW E + S PF +
Sbjct: 115 GWTAEGEN-TSTPFEV 129
>sp|Q498R7|CA123_RAT UPF0587 protein C1orf123 homolog OS=Rattus norvegicus PE=2 SV=1
Length = 160
Score = 93.6 bits (231), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 47/127 (37%), Positives = 75/127 (59%), Gaps = 7/127 (5%)
Query: 1 MVNCMLMISADLENLTNLQPQGGCDDPNFSYFFKLKCG-CGELSQKETCVSLAETLPTQG 59
M L + A LEN+TNL+P G +F ++ K+KCG CGE+S+K + L +++ +G
Sbjct: 1 MGKIALQLKATLENVTNLRPVG----EDFRWYLKMKCGNCGEISEKWQYIRLMDSVALKG 56
Query: 60 GKGTTNLIQKCKFCGREGTVTMIPGRGKPLTQEAAQSGGFSPLMLFDCRGYEPVDFVFGV 119
G+G+ +++QKCK C RE ++ ++ K E + F ++ F+CRG EPVDF
Sbjct: 57 GRGSASMVQKCKLCARENSIEILSSTIKSYNAEDNEK--FKTIVEFECRGLEPVDFQPQA 114
Query: 120 GWKVESV 126
G+ E V
Sbjct: 115 GFAAEGV 121
>sp|Q32P66|CA123_BOVIN UPF0587 protein C1orf123 homolog OS=Bos taurus PE=2 SV=1
Length = 160
Score = 93.2 bits (230), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 46/122 (37%), Positives = 74/122 (60%), Gaps = 7/122 (5%)
Query: 6 LMISADLENLTNLQPQGGCDDPNFSYFFKLKCG-CGELSQKETCVSLAETLPTQGGKGTT 64
L + A LEN+TNL+P G +F ++ K+KCG CGE+S+K + L +++ +GG+G+
Sbjct: 6 LQLKATLENVTNLRPVG----EDFRWYLKMKCGNCGEISEKWQYIRLMDSVALKGGRGSA 61
Query: 65 NLIQKCKFCGREGTVTMIPGRGKPLTQEAAQSGGFSPLMLFDCRGYEPVDFVFGVGWKVE 124
+++QKCK C RE ++ ++ K E + F ++ F+CRG EPVDF G+ E
Sbjct: 62 SMVQKCKLCSRENSIEILSSTIKSYNAEDNEK--FKTIVEFECRGLEPVDFQPQAGFAAE 119
Query: 125 SV 126
V
Sbjct: 120 GV 121
>sp|Q8BHG2|CA123_MOUSE UPF0587 protein C1orf123 homolog OS=Mus musculus PE=2 SV=1
Length = 160
Score = 92.4 bits (228), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 46/127 (36%), Positives = 75/127 (59%), Gaps = 7/127 (5%)
Query: 1 MVNCMLMISADLENLTNLQPQGGCDDPNFSYFFKLKCG-CGELSQKETCVSLAETLPTQG 59
M L + A LEN+TNL+P G +F ++ K+KCG CGE+S+K + L +++ +G
Sbjct: 1 MGKIALQLKATLENVTNLRPVG----EDFRWYLKMKCGNCGEISEKWQYIRLMDSVALKG 56
Query: 60 GKGTTNLIQKCKFCGREGTVTMIPGRGKPLTQEAAQSGGFSPLMLFDCRGYEPVDFVFGV 119
G+G+ +++QKCK C RE ++ ++ K E + F ++ F+CRG EPVDF
Sbjct: 57 GRGSASMVQKCKLCARENSIDILSSTIKAYNAEDNEK--FKTIVEFECRGLEPVDFQPQA 114
Query: 120 GWKVESV 126
G+ + V
Sbjct: 115 GFAADGV 121
>sp|A1Z9A2|U587_DROME UPF0587 protein CG4646 OS=Drosophila melanogaster GN=CG4646 PE=2
SV=1
Length = 163
Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 49/128 (38%), Positives = 68/128 (53%), Gaps = 8/128 (6%)
Query: 1 MVNCMLMISADLENLTNLQPQGGCDDPNFSYFFKLKC-GCGELSQKETCVSLAETLPTQG 59
MV L ISA LEN+ L+ P++S+F KLKC CGE S K ++ +E +
Sbjct: 1 MVRVGLQISATLENVDKLETSH----PDYSFFLKLKCSNCGEQSDKWHDITESERVQQDS 56
Query: 60 GKGTT-NLIQKCKFCGREGTVTMIPGRGKPLTQEAAQSGGFSPLMLFDCRGYEPVDFVFG 118
N KCK C RE ++ ++ P T A SG F +++F+CRG EPV+F
Sbjct: 57 RNAAGFNFFMKCKMCSRENSIDIVDKSNAPYT--ADDSGAFKTIVVFECRGAEPVEFSPR 114
Query: 119 VGWKVESV 126
VGW+V S
Sbjct: 115 VGWRVSSA 122
>sp|Q290L7|U587_DROPS UPF0587 protein GA18326 OS=Drosophila pseudoobscura pseudoobscura
GN=GA18326 PE=3 SV=1
Length = 163
Score = 82.8 bits (203), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 49/126 (38%), Positives = 66/126 (52%), Gaps = 10/126 (7%)
Query: 1 MVNCMLMISADLENLTNLQPQGGCDDPNFSYFFKLKC-GCGELSQKETCVSLAETLPTQG 59
MV L ISA LEN+ L+ P++ +F KL C CGE S K ++ +E + Q
Sbjct: 1 MVRVGLQISATLENIDKLETSH----PDYPFFVKLTCSNCGEQSDKWHDITESERVQ-QD 55
Query: 60 GKGTT--NLIQKCKFCGREGTVTMIPGRGKPLTQEAAQSGGFSPLMLFDCRGYEPVDFVF 117
+ T N KCK C RE ++ ++ P T A SG +++FDCRG EPVDF
Sbjct: 56 TRNTAGFNFFMKCKMCSRENSIDIVEKSNVPYT--ADDSGKLKTIVIFDCRGLEPVDFSP 113
Query: 118 GVGWKV 123
GWKV
Sbjct: 114 RSGWKV 119
>sp|Q9BI88|U587_CAEEL UPF0587 protein F46B6.12 OS=Caenorhabditis elegans GN=F46B6.12 PE=3
SV=2
Length = 167
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 63/123 (51%), Gaps = 6/123 (4%)
Query: 6 LMISADLENLTNLQPQGGCDDPNFSYFFKLKC-GCGELSQKETCVSLAETLPTQGGKGTT 64
L + L+ +T+L+P D +F + KLKC CGE V L E L G +G
Sbjct: 6 LELKCQLKGITDLRPD---DTDSFHWHMKLKCTNCGEAPDHWQYVVLNEMLDVPGSRGEA 62
Query: 65 NLIQKCKFCGREGTVTMIPGRGKPLTQEAAQSGGFSPLMLFDCRGYEPVDFVFGVGWKVE 124
NL++KCK CGR T+T++ K E Q+ + + +FDCRG EP DF W +
Sbjct: 63 NLVEKCKLCGRVNTLTIVEDMFKSYNIE--QNEKWQQIAVFDCRGLEPFDFDPRDEWIAK 120
Query: 125 SVS 127
SV
Sbjct: 121 SVE 123
>sp|O74797|YGN3_SCHPO UPF0587 protein C2D10.03c OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=SPBC2D10.03c PE=3 SV=1
Length = 157
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 58/112 (51%), Gaps = 9/112 (8%)
Query: 6 LMISADLENLTNLQPQGGCDDPNFSYFFKLKC-GCGELSQKETCVSLAETLPTQGGKGTT 64
L ++A+L + NL P+ D+ +F Y FK++C GC E+ +S +ET G KG
Sbjct: 6 LNLNAELTGVKNLAPK---DEESFYYAFKVQCSGCREIHDNAIEISRSETHSIPGSKGEA 62
Query: 65 NLIQKCKFCGREGTVTMIPGRGKPLTQEAAQSGGFSPLMLFDCRGYEPVDFV 116
NLI CK C R+ +I G P S +++ +CRG E V+F+
Sbjct: 63 NLIWTCKNC-RKTCSFVIEGPFSPYN----DSQETKKVLVLECRGCELVEFI 109
>sp|Q55C72|U587_DICDI UPF0587 protein OS=Dictyostelium discoideum GN=DDB_G0270194 PE=3
SV=1
Length = 156
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 57/129 (44%), Gaps = 13/129 (10%)
Query: 1 MVNCMLMISADLENLTNLQPQGGCDDPNFSYFF-KLKC-GCGELSQKETCVSLAETLPTQ 58
MV + + A+LE + N+ P + FF K+KC CGE+ K + L ++
Sbjct: 1 MVRQSISLKAELEEIQNIFP------ATYKIFFLKIKCSNCGEIPDK--WIGLDKSNIEV 52
Query: 59 GGKGTTNLIQKCKFCGREGTVTMIPGRGKPLTQEAAQSGGFSPLMLFDCRGYEPVDFVFG 118
GK NL KCK C RE ++ + + +S + FDCRG E +F
Sbjct: 53 IGKSNVNLATKCKGCNRENSIVI---EDTDYSSRTIESEKDFEIARFDCRGVEIEEFDPR 109
Query: 119 VGWKVESVS 127
W V S S
Sbjct: 110 DNWIVVSSS 118
>sp|P25654|YCY0_YEAST UPF0587 protein YCR090C OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=YCR090C PE=1 SV=1
Length = 182
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 57/130 (43%), Gaps = 22/130 (16%)
Query: 6 LMISADL-ENLTNLQPQGGCDDPNFSYFFKLKC-GCGELSQKETCVSLAETLPTQGGKGT 63
L++ A L EN+T + + ++ + F L+C C EL + ++ E KGT
Sbjct: 5 LVLKATLSENVTKVSIENT-NESRAEFAFDLQCTSCRELHDSKVIINTFEEYAMPASKGT 63
Query: 64 TNLIQKCKFCGREGTVTMIPGRGKPLTQEA------------------AQSGGFSPLMLF 105
+ + KCKFC +E +V + + LT ++ + F PL L
Sbjct: 64 ASFLMKCKFCSKELSVNLCAFEDEYLTDQSDDKWAKIKDVRKKHGLSKVKEDSFIPLSL- 122
Query: 106 DCRGYEPVDF 115
DCRG E + F
Sbjct: 123 DCRGCELIKF 132
>sp|Q8PBC1|TRMD_XANCP tRNA (guanine-N(1)-)-methyltransferase OS=Xanthomonas campestris
pv. campestris (strain ATCC 33913 / NCPPB 528 / LMG 568)
GN=trmD PE=3 SV=1
Length = 252
Score = 32.7 bits (73), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 8/70 (11%)
Query: 56 PTQGGKGTTNLIQKCKFC--------GREGTVTMIPGRGKPLTQEAAQSGGFSPLMLFDC 107
P GG G LI+ + C R V + +G+PLTQ A+ P M+ C
Sbjct: 53 PFGGGPGMVMLIEPLRACLEVAQAADARPAPVIYLSPQGRPLTQPLARELAQLPRMVLLC 112
Query: 108 RGYEPVDFVF 117
YE VD F
Sbjct: 113 GRYEGVDERF 122
>sp|Q4US84|TRMD_XANC8 tRNA (guanine-N(1)-)-methyltransferase OS=Xanthomonas campestris
pv. campestris (strain 8004) GN=trmD PE=3 SV=1
Length = 252
Score = 32.7 bits (73), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 8/70 (11%)
Query: 56 PTQGGKGTTNLIQKCKFC--------GREGTVTMIPGRGKPLTQEAAQSGGFSPLMLFDC 107
P GG G LI+ + C R V + +G+PLTQ A+ P M+ C
Sbjct: 53 PFGGGPGMVMLIEPLRACLEVAQAADARPAPVIYLSPQGRPLTQPLARELAQLPRMVLLC 112
Query: 108 RGYEPVDFVF 117
YE VD F
Sbjct: 113 GRYEGVDERF 122
>sp|Q8PMY1|TRMD_XANAC tRNA (guanine-N(1)-)-methyltransferase OS=Xanthomonas axonopodis
pv. citri (strain 306) GN=trmD PE=3 SV=1
Length = 252
Score = 32.3 bits (72), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 31/73 (42%), Gaps = 8/73 (10%)
Query: 53 ETLPTQGGKGTTNLIQKCKFC--------GREGTVTMIPGRGKPLTQEAAQSGGFSPLML 104
+ P GG G LI+ + C R V + +G+PLTQ A+ P M+
Sbjct: 50 DDRPFGGGPGMVMLIEPLRACLDAVQAADARPAPVIYLSPQGRPLTQVLARELAQLPRMV 109
Query: 105 FDCRGYEPVDFVF 117
C YE VD F
Sbjct: 110 LVCGRYEGVDERF 122
>sp|Q3BVY8|TRMD_XANC5 tRNA (guanine-N(1)-)-methyltransferase OS=Xanthomonas campestris
pv. vesicatoria (strain 85-10) GN=trmD PE=3 SV=1
Length = 252
Score = 32.3 bits (72), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 8/70 (11%)
Query: 56 PTQGGKGTTNLIQKCKFC--------GREGTVTMIPGRGKPLTQEAAQSGGFSPLMLFDC 107
P GG G LI+ + C R V + +G+PLTQ A+ P M+ C
Sbjct: 53 PFGGGPGMVMLIEPLRACLETVQAADTRPAPVIYLSPQGRPLTQALARELAQLPRMVLLC 112
Query: 108 RGYEPVDFVF 117
YE VD F
Sbjct: 113 GRYEGVDERF 122
>sp|Q2G8H2|TRMD_NOVAD tRNA (guanine-N(1)-)-methyltransferase OS=Novosphingobium
aromaticivorans (strain DSM 12444) GN=trmD PE=3 SV=1
Length = 246
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 35/81 (43%), Gaps = 9/81 (11%)
Query: 56 PTQGGKG---TTNLIQKCKFCGREG-----TVTMIPGRGKPLTQEAAQSGGFSPLMLFDC 107
P GG G +++ K RE + M P RGKPLTQE + P ++ C
Sbjct: 55 PAGGGAGMVLRVDVLAKAIDHAREAHPGCPVIAMTP-RGKPLTQERVRQLADGPGVIVLC 113
Query: 108 RGYEPVDFVFGVGWKVESVSF 128
+E D G +VE VS
Sbjct: 114 GRFEGFDERIFAGREVEEVSV 134
>sp|Q07496|EPHA4_CHICK Ephrin type-A receptor 4 OS=Gallus gallus GN=EPHA4 PE=1 SV=2
Length = 986
Score = 31.2 bits (69), Expect = 2.0, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 19 QPQGGCDDPNFSYFFKLKCGCGELSQKETCVSLAETLPTQGGKGTTNL 66
Q +GG DD +++ K +CG GE S +C S P Q G TT +
Sbjct: 352 QNKGGRDDISYNVVCK-RCGAGEPSHCRSCGSGVHFSPQQNGLKTTKV 398
>sp|Q87H52|BETB_VIBPA Betaine aldehyde dehydrogenase OS=Vibrio parahaemolyticus serotype
O3:K6 (strain RIMD 2210633) GN=betB PE=3 SV=1
Length = 486
Score = 31.2 bits (69), Expect = 2.1, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 67 IQKCKFCGREGTVTMIPG-RGKPLTQEAAQSGGFSPLMLFD 106
I K F G GT ++ G K L Q + GG SPL++FD
Sbjct: 218 IAKVSFTGESGTGKVVMGDSAKTLKQVTMELGGKSPLIVFD 258
>sp|B6CZ17|GRK7A_XENLA G protein-coupled receptor kinase 7A OS=Xenopus laevis GN=grk7-a
PE=1 SV=1
Length = 551
Score = 30.4 bits (67), Expect = 3.5, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 6/44 (13%)
Query: 86 GKPLTQEAAQSGGFSPLMLFDCRGYEPVDFVFGVGWKVESVSFY 129
GKP+TQ A +G +P +L D VD+ + V W S Y
Sbjct: 342 GKPITQRAGTNGYMAPEILTD------VDYSYPVDWFAMGCSIY 379
>sp|A4J665|TRMD_DESRM tRNA (guanine-N(1)-)-methyltransferase OS=Desulfotomaculum reducens
(strain MI-1) GN=trmD PE=3 SV=1
Length = 254
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 24/46 (52%)
Query: 69 KCKFCGREGTVTMIPGRGKPLTQEAAQSGGFSPLMLFDCRGYEPVD 114
K K G+ G V M+ +G+P TQE A+ ++ C YE +D
Sbjct: 75 KAKNAGQVGRVIMMCPQGEPFTQEYAKELAREENLVIVCGHYEGID 120
>sp|Q12802|AKP13_HUMAN A-kinase anchor protein 13 OS=Homo sapiens GN=AKAP13 PE=1 SV=2
Length = 2813
Score = 29.6 bits (65), Expect = 6.2, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 7/58 (12%)
Query: 40 GELSQKETCVSLAETLPTQGGKGTTNLIQKCKFCGREGTVTMIPGRGKPLTQEAAQSG 97
G +S +++C+ ++LP G KGT L CG T G P QE+ SG
Sbjct: 392 GTVSDQDSCL---QSLPDCGVKGTEGLSS----CGNRNEETGTKSSGMPTDQESLSSG 442
>sp|B5R4I5|YFEW_SALEP UPF0214 protein YfeW OS=Salmonella enteritidis PT4 (strain P125109)
GN=yfeW PE=3 SV=1
Length = 432
Score = 29.6 bits (65), Expect = 6.4, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 89 LTQEAAQSGGFSPLMLFDCRG------YEPVDFVFGVGWKV 123
L Q GG+ L LFD + + P D FG+GW+V
Sbjct: 310 LMQVMLNGGGYGNLKLFDDKTVAQFTRHSPEDATFGLGWRV 350
>sp|Q9A238|HSLU_CAUCR ATP-dependent protease ATPase subunit HslU OS=Caulobacter
crescentus (strain ATCC 19089 / CB15) GN=hslU PE=3 SV=1
Length = 430
Score = 29.3 bits (64), Expect = 8.0, Method: Composition-based stats.
Identities = 23/77 (29%), Positives = 32/77 (41%), Gaps = 16/77 (20%)
Query: 33 FKLKCGCGELSQKETCVSLAET------LPTQGGKGTTNLIQKCKFCGREGTVTMIPGRG 86
F+ K GEL KE + LA+T +P Q G NL K G G
Sbjct: 147 FRKKLRAGELDDKEVELQLADTGGPSFDIPGQPGAAVFNLSDMMKSL----------GGG 196
Query: 87 KPLTQEAAQSGGFSPLM 103
+ T + SG ++PL+
Sbjct: 197 RTKTHKTTVSGAWAPLI 213
>sp|B8GW06|HSLU_CAUCN ATP-dependent protease ATPase subunit HslU OS=Caulobacter
crescentus (strain NA1000 / CB15N) GN=hslU PE=3 SV=1
Length = 430
Score = 29.3 bits (64), Expect = 8.0, Method: Composition-based stats.
Identities = 23/77 (29%), Positives = 32/77 (41%), Gaps = 16/77 (20%)
Query: 33 FKLKCGCGELSQKETCVSLAET------LPTQGGKGTTNLIQKCKFCGREGTVTMIPGRG 86
F+ K GEL KE + LA+T +P Q G NL K G G
Sbjct: 147 FRKKLRAGELDDKEVELQLADTGGPSFDIPGQPGAAVFNLSDMMKSL----------GGG 196
Query: 87 KPLTQEAAQSGGFSPLM 103
+ T + SG ++PL+
Sbjct: 197 RTKTHKTTVSGAWAPLI 213
>sp|B5RCU8|YFEW_SALG2 UPF0214 protein YfeW OS=Salmonella gallinarum (strain 287/91 / NCTC
13346) GN=yfeW PE=3 SV=1
Length = 432
Score = 28.9 bits (63), Expect = 8.7, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 6/54 (11%)
Query: 89 LTQEAAQSGGFSPLMLFDCRGY------EPVDFVFGVGWKVESVSFYSCPFPIV 136
L Q GG+ L LFD + P D FG+GW+V S + F ++
Sbjct: 310 LMQVMLNGGGYGNLKLFDDKTVAQFTRRSPEDATFGLGWRVNGNSSMTPTFGVL 363
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.140 0.455
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,102,596
Number of Sequences: 539616
Number of extensions: 2162234
Number of successful extensions: 3689
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 3653
Number of HSP's gapped (non-prelim): 41
length of query: 139
length of database: 191,569,459
effective HSP length: 104
effective length of query: 35
effective length of database: 135,449,395
effective search space: 4740728825
effective search space used: 4740728825
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)