Query 032492
Match_columns 139
No_of_seqs 107 out of 238
Neff 5.8
Searched_HMMs 29240
Date Tue Mar 26 00:24:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032492.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032492hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zso_A Hypothetical protein; s 100.0 6.6E-52 2.3E-56 317.5 15.7 123 1-133 9-133 (164)
2 3j20_W 30S ribosomal protein S 92.2 0.056 1.9E-06 34.9 1.6 34 27-76 9-43 (63)
3 1qxf_A GR2, 30S ribosomal prot 90.1 0.13 4.5E-06 33.4 1.8 32 30-76 3-35 (66)
4 2xzm_6 RPS27E; ribosome, trans 89.0 0.17 5.8E-06 34.1 1.7 34 27-76 26-60 (81)
5 3iz6_X 40S ribosomal protein S 88.1 0.14 4.8E-06 34.8 0.9 34 27-76 30-64 (86)
6 3u5c_b RP61, YS20, 40S ribosom 85.5 0.3 1E-05 32.9 1.4 34 27-76 28-62 (82)
7 2x5c_A Hypothetical protein OR 64.0 5.1 0.00017 28.0 2.8 23 65-87 50-72 (131)
8 2elu_A Zinc finger protein 406 56.1 2.3 8E-05 24.0 -0.0 19 59-77 1-19 (37)
9 2e2z_A TIM15; protein import, 47.0 27 0.00094 24.0 4.3 41 29-78 8-49 (100)
10 1k81_A EIF-2-beta, probable tr 43.9 14 0.00047 20.6 2.0 17 64-80 18-34 (36)
11 3o9x_A Uncharacterized HTH-typ 41.1 29 0.00098 23.4 3.7 40 35-76 3-45 (133)
12 2k5c_A Uncharacterized protein 38.8 10 0.00035 25.7 1.0 14 65-78 49-62 (95)
13 1wii_A Hypothetical UPF0222 pr 36.4 15 0.00052 24.5 1.6 16 67-82 23-38 (85)
14 1vq8_Z 50S ribosomal protein L 35.7 23 0.00078 23.4 2.3 10 67-76 45-54 (83)
15 1lko_A Rubrerythrin all-iron(I 35.0 26 0.00089 26.0 2.9 25 34-76 155-180 (191)
16 3kup_A Chromobox protein homol 30.9 44 0.0015 20.8 3.0 20 57-76 21-40 (65)
17 3cc2_Z 50S ribosomal protein L 24.3 42 0.0014 23.7 2.2 10 67-76 78-87 (116)
18 1yuz_A Nigerythrin; rubrythrin 23.3 31 0.0011 26.0 1.5 24 34-76 171-195 (202)
19 2liy_A Epidermal patterning fa 22.4 63 0.0021 18.9 2.3 18 69-86 12-29 (45)
20 3vhs_A ATPase wrnip1; zinc fin 22.2 37 0.0013 18.0 1.2 12 33-44 5-17 (29)
21 3q6s_A Chromobox protein homol 21.8 82 0.0028 20.3 3.1 19 58-76 19-37 (78)
22 2fmm_A Chromobox protein homol 20.8 56 0.0019 20.8 2.1 24 58-84 25-48 (74)
23 3i3c_A Chromobox protein homol 20.7 88 0.003 20.1 3.1 19 58-76 32-50 (75)
24 2els_A Zinc finger protein 406 20.5 30 0.001 17.0 0.6 11 66-76 8-18 (36)
No 1
>1zso_A Hypothetical protein; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium, SGPP; 2.17A {Plasmodium falciparum} SCOP: b.166.1.1
Probab=100.00 E-value=6.6e-52 Score=317.52 Aligned_cols=123 Identities=20% Similarity=0.331 Sum_probs=115.0
Q ss_pred CceEEEEEEEEecceeeeeeCCCCCCCCceEEEEEEec-CCceeeceEEEecCeeEEeCCCCceeeEEEeeccCCCeeEE
Q 032492 1 MVNCMLMISADLENLTNLQPQGGCDDPNFSYFFKLKCG-CGELSQKETCVSLAETLPTQGGKGTTNLIQKCKFCGREGTV 79 (139)
Q Consensus 1 Mv~~~L~vkAeLenVt~l~p~~~~~~p~~~~~fkvkCt-C~e~~~~~v~i~~~e~~e~~gsRG~aNfv~KCk~C~re~si 79 (139)
|++++|++||+||||++|+|. |+|.|+|||||+ |||+|+| |+|+++|+++|+||||+||||+|||+|+|++||
T Consensus 9 ~~~~~L~i~AelenVt~L~p~-----~~~~~~fkvkC~~C~E~~~k-v~v~~~e~~ei~gsRG~aNfv~KCk~C~re~Si 82 (164)
T 1zso_A 9 MKNTVVRIKAELENVKRLFCD-----DEYLWIFNIRDSTSSLTRDN-IQFRKTDILEIPNSRGTANFMIKWTEYPKYSTI 82 (164)
T ss_dssp CCCEEEEEEEEEESEEEEECC-----TTCCEEEEEEETTSSCEEEE-EEECTTCBEECTTSSCEESEEECCSSSSCCEEE
T ss_pred eEEEEEEEEEEEcCcceeecC-----CCcEEEEEEEECCCCcccCC-EEEcchheeecCCCCcceeEEEeccccCCcceE
Confidence 999999999999999999996 458999999999 9999999 999999999999999999999999999999999
Q ss_pred EEecCCC-cccccccccCCCCccEEEEEccCceEEeEEeCCCEEEEEeecCceee
Q 032492 80 TMIPGRG-KPLTQEAAQSGGFSPLMLFDCRGYEPVDFVFGVGWKVESVSFYSCPF 133 (139)
Q Consensus 80 ~i~~~~~-~~~~~e~~~~~~~~~I~~fdCRGlEpv~f~P~~~w~~~s~~~~~~~~ 133 (139)
+|++++. ++|+.++ +++|++|++||||||||++|+|++||.|++++|+ .|
T Consensus 83 ~i~~~~~~~~y~~~d--~~k~~~i~~FDCRGlEp~eF~p~~~w~a~~~esG--~f 133 (164)
T 1zso_A 83 NFVNTKNSCSYEEVN--NNEWRDFASFECRGIELIDFFPSNNFIVEDTKGK--LY 133 (164)
T ss_dssp EEECCTTTTEEEGGG--TTSCEEEEEEEEESEEEEEECCCSCEEEEETTSC--EE
T ss_pred EEEeCCCCccccccc--CCCceEEEEEECCCeeeEEEecCCcEEEEECCCC--cE
Confidence 9999973 2787754 5799999999999999999999999999998877 55
No 2
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=92.19 E-value=0.056 Score=34.86 Aligned_cols=34 Identities=29% Similarity=0.720 Sum_probs=26.4
Q ss_pred CCceEEEEEEec-CCceeeceEEEecCeeEEeCCCCceeeEEEeeccCCCe
Q 032492 27 PNFSYFFKLKCG-CGELSQKETCVSLAETLPTQGGKGTTNLIQKCKFCGRE 76 (139)
Q Consensus 27 p~~~~~fkvkCt-C~e~~~~~v~i~~~e~~e~~gsRG~aNfv~KCk~C~re 76 (139)
|+ .||++|||. |+.+. +.+ +.|..+.+|..|++.
T Consensus 9 Pn-S~Fm~VkCp~C~~~q---~VF------------Sha~t~V~C~~Cgt~ 43 (63)
T 3j20_W 9 PR-SRFLRVKCIDCGNEQ---IVF------------SHPATKVRCLICGAT 43 (63)
T ss_dssp CS-CCEEEEECSSSCCEE---EEE------------SSCSSCEECSSSCCE
T ss_pred CC-CcEEEEECCCCCCee---EEE------------ecCCeEEEccCcCCE
Confidence 54 899999999 99875 222 346778999999875
No 3
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=90.10 E-value=0.13 Score=33.39 Aligned_cols=32 Identities=38% Similarity=0.744 Sum_probs=24.8
Q ss_pred eEEEEEEec-CCceeeceEEEecCeeEEeCCCCceeeEEEeeccCCCe
Q 032492 30 SYFFKLKCG-CGELSQKETCVSLAETLPTQGGKGTTNLIQKCKFCGRE 76 (139)
Q Consensus 30 ~~~fkvkCt-C~e~~~~~v~i~~~e~~e~~gsRG~aNfv~KCk~C~re 76 (139)
.||++|||. |+.+. +.+ +.|..+.+|..|++.
T Consensus 3 S~Fm~VKCp~C~niq---~VF------------ShA~tvV~C~~Cg~~ 35 (66)
T 1qxf_A 3 SRFVKVKCPDCEHEQ---VIF------------DHPSTIVKCIICGRT 35 (66)
T ss_dssp CCEEEEECTTTCCEE---EEE------------SSCSSCEECSSSCCE
T ss_pred ceeEEEECCCCCCce---EEE------------ecCceEEEcccCCCE
Confidence 478999999 99875 222 346778999999975
No 4
>2xzm_6 RPS27E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_6
Probab=89.02 E-value=0.17 Score=34.09 Aligned_cols=34 Identities=29% Similarity=0.724 Sum_probs=26.3
Q ss_pred CCceEEEEEEec-CCceeeceEEEecCeeEEeCCCCceeeEEEeeccCCCe
Q 032492 27 PNFSYFFKLKCG-CGELSQKETCVSLAETLPTQGGKGTTNLIQKCKFCGRE 76 (139)
Q Consensus 27 p~~~~~fkvkCt-C~e~~~~~v~i~~~e~~e~~gsRG~aNfv~KCk~C~re 76 (139)
|+ .|+++|||. |+.+. +.+ +.|..+.+|..|++.
T Consensus 26 Pn-S~Fm~VkCp~C~n~q---~VF------------ShA~t~V~C~~Cg~~ 60 (81)
T 2xzm_6 26 PN-SYFMDVKCAQCQNIQ---MIF------------SNAQSTIICEKCSAI 60 (81)
T ss_dssp CS-CCEEEEECSSSCCEE---EEE------------TTCSSCEECSSSCCE
T ss_pred CC-CcEEEeECCCCCCee---EEE------------ecCccEEEccCCCCE
Confidence 54 789999999 99875 222 256788999999875
No 5
>3iz6_X 40S ribosomal protein S27 (S27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=88.08 E-value=0.14 Score=34.85 Aligned_cols=34 Identities=29% Similarity=0.710 Sum_probs=23.8
Q ss_pred CCceEEEEEEec-CCceeeceEEEecCeeEEeCCCCceeeEEEeeccCCCe
Q 032492 27 PNFSYFFKLKCG-CGELSQKETCVSLAETLPTQGGKGTTNLIQKCKFCGRE 76 (139)
Q Consensus 27 p~~~~~fkvkCt-C~e~~~~~v~i~~~e~~e~~gsRG~aNfv~KCk~C~re 76 (139)
|+ .|+++|||. |+.+. +.+ +.|..+..|..|+..
T Consensus 30 Pn-S~Fm~VkCp~C~~~~---~VF------------ShA~t~V~C~~Cgtv 64 (86)
T 3iz6_X 30 PN-SFFMDVKCQGCFNIT---TVF------------SHSQTVVVCPGCQTV 64 (86)
T ss_dssp ----CEEEEECTTTCCEE---EEE------------TTCSSCCCCSSSCCC
T ss_pred CC-CcEeEEECCCCCCee---EEE------------ecCCcEEEccCCCCE
Confidence 54 899999999 99875 222 345677889999875
No 6
>3u5c_b RP61, YS20, 40S ribosomal protein S27-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_X 3u5g_b
Probab=85.53 E-value=0.3 Score=32.92 Aligned_cols=34 Identities=29% Similarity=0.725 Sum_probs=25.9
Q ss_pred CCceEEEEEEec-CCceeeceEEEecCeeEEeCCCCceeeEEEeeccCCCe
Q 032492 27 PNFSYFFKLKCG-CGELSQKETCVSLAETLPTQGGKGTTNLIQKCKFCGRE 76 (139)
Q Consensus 27 p~~~~~fkvkCt-C~e~~~~~v~i~~~e~~e~~gsRG~aNfv~KCk~C~re 76 (139)
|+ .|+++|||. |+.+. +.+ +.|..+..|..|++.
T Consensus 28 Pn-S~Fm~VkCp~C~~~q---~VF------------Sha~t~V~C~~Cg~~ 62 (82)
T 3u5c_b 28 PR-SYFLDVKCPGCLNIT---TVF------------SHAQTAVTCESCSTI 62 (82)
T ss_dssp CC-CCEEEEECTTSCSCE---EEE------------SBCSSCCCCSSSCCC
T ss_pred CC-CcEEEEECCCCCCee---EEE------------ecCCeEEEccccCCE
Confidence 54 899999999 99875 222 345678889999875
No 7
>2x5c_A Hypothetical protein ORF131; viral protein; HET: GOL; 1.80A {Pyrobaculum spherical virus}
Probab=63.99 E-value=5.1 Score=27.99 Aligned_cols=23 Identities=30% Similarity=0.700 Sum_probs=19.6
Q ss_pred eEEEeeccCCCeeEEEEecCCCc
Q 032492 65 NLIQKCKFCGREGTVTMIPGRGK 87 (139)
Q Consensus 65 Nfv~KCk~C~re~si~i~~~~~~ 87 (139)
-+..||+-|+.++|++|+..++.
T Consensus 50 fmhakcprcgaegsvsivetkng 72 (131)
T 2x5c_A 50 FMHAKCPRCGAEGSVSIVETKNG 72 (131)
T ss_dssp CCEEECTTTSCEEEEEEEECTTS
T ss_pred eeeccCCCCCCccceEEEEecCC
Confidence 35689999999999999988753
No 8
>2elu_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2elw_A
Probab=56.12 E-value=2.3 Score=23.98 Aligned_cols=19 Identities=32% Similarity=0.922 Sum_probs=15.0
Q ss_pred CCCceeeEEEeeccCCCee
Q 032492 59 GGKGTTNLIQKCKFCGREG 77 (139)
Q Consensus 59 gsRG~aNfv~KCk~C~re~ 77 (139)
||.|..-+-..|.||++.-
T Consensus 1 gssgsskikqhcrfckkky 19 (37)
T 2elu_A 1 GSSGSSGIKQHCRFCKKKY 19 (37)
T ss_dssp CCSCCCCCCCEETTTTEEC
T ss_pred CCCchHHHHHHHHHHHHHH
Confidence 5667777888999999863
No 9
>2e2z_A TIM15; protein import, zinc finger, protein transport, chaperone regulator; NMR {Saccharomyces cerevisiae}
Probab=46.96 E-value=27 Score=24.04 Aligned_cols=41 Identities=22% Similarity=0.458 Sum_probs=24.6
Q ss_pred ceEEEEEEec-CCceeeceEEEecCeeEEeCCCCceeeEEEeeccCCCeeE
Q 032492 29 FSYFFKLKCG-CGELSQKETCVSLAETLPTQGGKGTTNLIQKCKFCGREGT 78 (139)
Q Consensus 29 ~~~~fkvkCt-C~e~~~~~v~i~~~e~~e~~gsRG~aNfv~KCk~C~re~s 78 (139)
-.|.+.+.|. |+..+.+ .|++. .. -+|. ...+|..|+...-
T Consensus 8 ~~~~l~FTC~~C~tRs~k--~iSk~-aY----~~Gv--Viv~C~gC~n~Hl 49 (100)
T 2e2z_A 8 PKMMIAFTCKKCNTRSSH--TMSKQ-AY----EKGT--VLISCPHCKVRHL 49 (100)
T ss_dssp CEEEEEEEETTTTEEEEE--EEEHH-HH----HTSE--EEEECTTTCCEEE
T ss_pred CcEEEEEEccCCCCcchh--hcCHH-Hh----hCCE--EEEEcCCCccceE
Confidence 3688888888 8876644 34431 11 1243 5778888877643
No 10
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=43.95 E-value=14 Score=20.60 Aligned_cols=17 Identities=24% Similarity=0.485 Sum_probs=14.1
Q ss_pred eeEEEeeccCCCeeEEE
Q 032492 64 TNLIQKCKFCGREGTVT 80 (139)
Q Consensus 64 aNfv~KCk~C~re~si~ 80 (139)
-.+.+||+-|+...++.
T Consensus 18 ~~~~l~C~aCG~~~~v~ 34 (36)
T 1k81_A 18 RVHLLKCMACGAIRPIR 34 (36)
T ss_dssp TEEEEEEETTTEEEEEC
T ss_pred CcEEEEhhcCCCccccc
Confidence 36899999999988763
No 11
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=41.06 E-value=29 Score=23.43 Aligned_cols=40 Identities=18% Similarity=0.248 Sum_probs=24.5
Q ss_pred EEec-CCceeeceEEEecCeeEEeCCCCcee-e-EEEeeccCCCe
Q 032492 35 LKCG-CGELSQKETCVSLAETLPTQGGKGTT-N-LIQKCKFCGRE 76 (139)
Q Consensus 35 vkCt-C~e~~~~~v~i~~~e~~e~~gsRG~a-N-fv~KCk~C~re 76 (139)
.+|. |+..+- +........+..|-.-.. + =.+.|..|+.+
T Consensus 3 M~Cp~Cg~~~~--~~~~~~~~~~~kg~~~~v~~v~~~~C~~CGE~ 45 (133)
T 3o9x_A 3 MKCPVCHQGEM--VSGIKDIPYTFRGRKTVLKGIHGLYCVHCEES 45 (133)
T ss_dssp CBCTTTSSSBE--EEEEEEEEEEETTEEEEEEEEEEEEESSSSCE
T ss_pred cCCCcCCCCce--eeceEEEEEEECCEEEEECCCceeECCCCCCE
Confidence 4799 987653 333444566666544343 3 36788888876
No 12
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=38.84 E-value=10 Score=25.67 Aligned_cols=14 Identities=36% Similarity=0.776 Sum_probs=12.1
Q ss_pred eEEEeeccCCCeeE
Q 032492 65 NLIQKCKFCGREGT 78 (139)
Q Consensus 65 Nfv~KCk~C~re~s 78 (139)
.|++||+.|+-|-.
T Consensus 49 ~F~FkCP~CgEEFy 62 (95)
T 2k5c_A 49 EFVFKCPVCGEEFY 62 (95)
T ss_dssp HSEEECTTTCCEEE
T ss_pred HHhhcCCCccHHHh
Confidence 69999999998844
No 13
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=36.45 E-value=15 Score=24.48 Aligned_cols=16 Identities=25% Similarity=0.615 Sum_probs=9.8
Q ss_pred EEeeccCCCeeEEEEe
Q 032492 67 IQKCKFCGREGTVTMI 82 (139)
Q Consensus 67 v~KCk~C~re~si~i~ 82 (139)
++.|.+|+.+.|+.+.
T Consensus 23 ~F~CPfCnh~~sV~vk 38 (85)
T 1wii_A 23 QFTCPFCNHEKSCDVK 38 (85)
T ss_dssp CCCCTTTCCSSCEEEE
T ss_pred eEcCCCCCCCCeEEEE
Confidence 4566666666665554
No 14
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=35.72 E-value=23 Score=23.40 Aligned_cols=10 Identities=30% Similarity=1.016 Sum_probs=9.1
Q ss_pred EEeeccCCCe
Q 032492 67 IQKCKFCGRE 76 (139)
Q Consensus 67 v~KCk~C~re 76 (139)
.|+|+.|++.
T Consensus 45 iW~C~~Cg~~ 54 (83)
T 1vq8_Z 45 IWQCSYCDYK 54 (83)
T ss_dssp EEEETTTCCE
T ss_pred eEECCCCCCE
Confidence 8999999986
No 15
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=35.03 E-value=26 Score=26.04 Aligned_cols=25 Identities=24% Similarity=0.664 Sum_probs=18.2
Q ss_pred EEEec-CCceeeceEEEecCeeEEeCCCCceeeEEEeeccCCCe
Q 032492 34 KLKCG-CGELSQKETCVSLAETLPTQGGKGTTNLIQKCKFCGRE 76 (139)
Q Consensus 34 kvkCt-C~e~~~~~v~i~~~e~~e~~gsRG~aNfv~KCk~C~re 76 (139)
+-+|+ ||.+++.. +.|. +|+.|+..
T Consensus 155 ~~~C~~CG~~~~g~---------~~p~---------~CP~C~~~ 180 (191)
T 1lko_A 155 KWRCRNCGYVHEGT---------GAPE---------LCPACAHP 180 (191)
T ss_dssp EEEETTTCCEEEEE---------ECCS---------BCTTTCCB
T ss_pred eEEECCCCCEeeCC---------CCCC---------CCCCCcCC
Confidence 56899 99998622 3443 89999875
No 16
>3kup_A Chromobox protein homolog 3; chromo shadow domain, structural genomics consortium, SGC, acetylation, chromatin regulator, nucleus, phosphoprotein; 1.77A {Homo sapiens} SCOP: b.34.13.2 PDB: 1dz1_A
Probab=30.87 E-value=44 Score=20.79 Aligned_cols=20 Identities=15% Similarity=0.160 Sum_probs=16.5
Q ss_pred eCCCCceeeEEEeeccCCCe
Q 032492 57 TQGGKGTTNLIQKCKFCGRE 76 (139)
Q Consensus 57 ~~gsRG~aNfv~KCk~C~re 76 (139)
...++|+-+|.+|||.|...
T Consensus 21 ~~~~~Gel~fLvKWKg~~~~ 40 (65)
T 3kup_A 21 ATDSSGELMFLMKWKDSDEA 40 (65)
T ss_dssp EECTTSSCEEEEEETTCSCC
T ss_pred EEcCCCcEEEEEEECCCChh
Confidence 34568999999999999864
No 17
>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z
Probab=24.25 E-value=42 Score=23.68 Aligned_cols=10 Identities=30% Similarity=1.016 Sum_probs=9.3
Q ss_pred EEeeccCCCe
Q 032492 67 IQKCKFCGRE 76 (139)
Q Consensus 67 v~KCk~C~re 76 (139)
+|+|+.|++.
T Consensus 78 IW~C~~Cgk~ 87 (116)
T 3cc2_Z 78 IWQCSYCDYK 87 (116)
T ss_dssp EEEETTTCCE
T ss_pred eEECCCCCCE
Confidence 8999999987
No 18
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=23.29 E-value=31 Score=25.98 Aligned_cols=24 Identities=29% Similarity=0.628 Sum_probs=17.7
Q ss_pred EEEec-CCceeeceEEEecCeeEEeCCCCceeeEEEeeccCCCe
Q 032492 34 KLKCG-CGELSQKETCVSLAETLPTQGGKGTTNLIQKCKFCGRE 76 (139)
Q Consensus 34 kvkCt-C~e~~~~~v~i~~~e~~e~~gsRG~aNfv~KCk~C~re 76 (139)
+-+|. ||.+++. +.| ++|+.|+..
T Consensus 171 ~~~C~~CG~i~~g----------~~p---------~~CP~C~~~ 195 (202)
T 1yuz_A 171 FHLCPICGYIHKG----------EDF---------EKCPICFRP 195 (202)
T ss_dssp EEECSSSCCEEES----------SCC---------SBCTTTCCB
T ss_pred EEEECCCCCEEcC----------cCC---------CCCCCCCCC
Confidence 46899 9999863 112 899999865
No 19
>2liy_A Epidermal patterning factor-like protein 9; plant peptide hormone, EPFL family, stomatal density, positi regulator, hormone; NMR {Arabidopsis thaliana}
Probab=22.43 E-value=63 Score=18.92 Aligned_cols=18 Identities=22% Similarity=0.580 Sum_probs=15.6
Q ss_pred eeccCCCeeEEEEecCCC
Q 032492 69 KCKFCGREGTVTMIPGRG 86 (139)
Q Consensus 69 KCk~C~re~si~i~~~~~ 86 (139)
.|+.|+...++.-+|..+
T Consensus 12 ECrgCr~~C~aeqvPvd~ 29 (45)
T 2liy_A 12 ECRGCRYKCRAEQVPVEG 29 (45)
T ss_dssp GGTTCCSEEEEEEEESSC
T ss_pred hhcCcccccceeeccccC
Confidence 599999999999988754
No 20
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=22.21 E-value=37 Score=17.97 Aligned_cols=12 Identities=25% Similarity=0.974 Sum_probs=9.0
Q ss_pred EEEEec-CCceee
Q 032492 33 FKLKCG-CGELSQ 44 (139)
Q Consensus 33 fkvkCt-C~e~~~ 44 (139)
|+|+|. |...-+
T Consensus 5 f~vqcpvcqq~mp 17 (29)
T 3vhs_A 5 FQVQCPVCQQMMP 17 (29)
T ss_dssp CEEECTTTCCEEE
T ss_pred eeeeChHHHHhCc
Confidence 789999 986543
No 21
>3q6s_A Chromobox protein homolog 1; incenp, heterochromatin, centromere, cell cycle; 1.93A {Homo sapiens} SCOP: b.34.13.2
Probab=21.81 E-value=82 Score=20.31 Aligned_cols=19 Identities=16% Similarity=0.183 Sum_probs=16.1
Q ss_pred CCCCceeeEEEeeccCCCe
Q 032492 58 QGGKGTTNLIQKCKFCGRE 76 (139)
Q Consensus 58 ~gsRG~aNfv~KCk~C~re 76 (139)
..++|+-.|.+|||.|...
T Consensus 19 ~~~~Gel~fLvKWKg~~~~ 37 (78)
T 3q6s_A 19 TDSSGELMFLMKWKNSDEA 37 (78)
T ss_dssp ECTTSSCEEEEEETTCSCE
T ss_pred EcCCCcEEEEEEECCCChh
Confidence 4568999999999999963
No 22
>2fmm_A Chromobox protein homolog 1; ENT domain, chromo shadow domain, EMSY protein, heterochroma protein 1, transcription; 1.80A {Homo sapiens} SCOP: b.34.13.2 PDB: 1s4z_A
Probab=20.82 E-value=56 Score=20.81 Aligned_cols=24 Identities=17% Similarity=0.340 Sum_probs=18.1
Q ss_pred CCCCceeeEEEeeccCCCeeEEEEecC
Q 032492 58 QGGKGTTNLIQKCKFCGREGTVTMIPG 84 (139)
Q Consensus 58 ~gsRG~aNfv~KCk~C~re~si~i~~~ 84 (139)
..++|+-.|.+|||.|.. +++++.
T Consensus 25 ~~~~Gel~fLvkWkg~d~---~dlVpa 48 (74)
T 2fmm_A 25 TDSSGELMFLMKWKNSDE---ADLVPA 48 (74)
T ss_dssp EEETTEEEEEEEETTCSC---CEEEEH
T ss_pred EcCCCcEEEEEEECCCCc---ccEEEH
Confidence 345789999999999987 445543
No 23
>3i3c_A Chromobox protein homolog 5; CBX5, chromo shadow domain, structural genomics, structural consortium, SGC, centromere, nucleus, phosphoprotein; 2.48A {Homo sapiens} SCOP: b.34.13.2
Probab=20.66 E-value=88 Score=20.06 Aligned_cols=19 Identities=16% Similarity=0.099 Sum_probs=13.7
Q ss_pred CCCCceeeEEEeeccCCCe
Q 032492 58 QGGKGTTNLIQKCKFCGRE 76 (139)
Q Consensus 58 ~gsRG~aNfv~KCk~C~re 76 (139)
..++|+-.|.+|||.|...
T Consensus 32 t~~~Gel~fLVKWKg~~e~ 50 (75)
T 3i3c_A 32 TDSCGDLMFLMKWKDTDEA 50 (75)
T ss_dssp EC---CCEEEEEETTSSCE
T ss_pred EccCCcEEEEEEECCCChh
Confidence 4567899999999999874
No 24
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.49 E-value=30 Score=17.00 Aligned_cols=11 Identities=27% Similarity=0.905 Sum_probs=8.3
Q ss_pred EEEeeccCCCe
Q 032492 66 LIQKCKFCGRE 76 (139)
Q Consensus 66 fv~KCk~C~re 76 (139)
-.++|..|++.
T Consensus 8 k~~~C~~C~k~ 18 (36)
T 2els_A 8 KIFTCEYCNKV 18 (36)
T ss_dssp CCEECTTTCCE
T ss_pred CCEECCCCCce
Confidence 35789999875
Done!