BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032493
(139 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FWS4|RK31_ARATH 50S ribosomal protein L31, chloroplastic OS=Arabidopsis thaliana
GN=RPL31 PE=1 SV=1
Length = 144
Score = 187 bits (475), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 88/132 (66%), Positives = 102/132 (77%), Gaps = 7/132 (5%)
Query: 1 MAQTLPNTFFQIKPSAPILPTRKVKNCAATGSGYRTR-------AVTCRKKDIHPQFYED 53
MA +LPN+F QI P P L RK A G R +TCRKK++HP+F+ED
Sbjct: 1 MAVSLPNSFLQISPCVPSLQLRKPVMAAVKGGKQSVRRSSNTVVQITCRKKELHPEFHED 60
Query: 54 AKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDADQVEKFRQKFGGLSEIM 113
AKVYCNGELVMTTGGT+KEYVVDVWSGNH FYLG RSA++VDADQVEKFR++F GLSEIM
Sbjct: 61 AKVYCNGELVMTTGGTKKEYVVDVWSGNHPFYLGNRSALMVDADQVEKFRKRFAGLSEIM 120
Query: 114 EIPVLKGEIVLP 125
EIPVLKGEI++P
Sbjct: 121 EIPVLKGEIIMP 132
>sp|Q5N0T7|RL31_SYNP6 50S ribosomal protein L31 OS=Synechococcus sp. (strain ATCC 27144 /
PCC 6301 / SAUG 1402/1) GN=rpmE PE=3 SV=1
Length = 77
Score = 82.8 bits (203), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 39/68 (57%), Positives = 48/68 (70%), Gaps = 1/68 (1%)
Query: 43 KKDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDADQVEKF 102
K DIHPQ+Y +AKVYCNGE VMT G TQ E VDVWSGNH FY G + + + +VE+F
Sbjct: 3 KADIHPQWYPEAKVYCNGEEVMTVGSTQPELHVDVWSGNHPFYTGTQKIIDTEG-RVERF 61
Query: 103 RQKFGGLS 110
+K+G L
Sbjct: 62 LRKYGMLE 69
>sp|Q31L35|RL31_SYNE7 50S ribosomal protein L31 OS=Synechococcus elongatus (strain PCC
7942) GN=rpmE PE=3 SV=1
Length = 77
Score = 82.8 bits (203), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 39/68 (57%), Positives = 48/68 (70%), Gaps = 1/68 (1%)
Query: 43 KKDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDADQVEKF 102
K DIHPQ+Y +AKVYCNGE VMT G TQ E VDVWSGNH FY G + + + +VE+F
Sbjct: 3 KADIHPQWYPEAKVYCNGEEVMTVGSTQPELHVDVWSGNHPFYTGTQKIIDTEG-RVERF 61
Query: 103 RQKFGGLS 110
+K+G L
Sbjct: 62 LRKYGMLE 69
>sp|Q8DMK6|RL31_THEEB 50S ribosomal protein L31 OS=Thermosynechococcus elongatus (strain
BP-1) GN=rpmE PE=3 SV=1
Length = 91
Score = 82.4 bits (202), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 36/67 (53%), Positives = 52/67 (77%), Gaps = 3/67 (4%)
Query: 43 KKDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDAD-QVEK 101
K +IHPQ+Y +AKVYC+GE++MT G T+ E VD+WSGNH F+ G + +VDA+ +VE+
Sbjct: 3 KPNIHPQWYPEAKVYCDGEVIMTVGSTKPELHVDIWSGNHPFFTGTQK--IVDAEGRVER 60
Query: 102 FRQKFGG 108
FR+K+ G
Sbjct: 61 FRRKYSG 67
>sp|Q7V9Y9|RL31_PROMA 50S ribosomal protein L31 OS=Prochlorococcus marinus (strain SARG /
CCMP1375 / SS120) GN=rpmE PE=3 SV=1
Length = 94
Score = 82.4 bits (202), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 37/65 (56%), Positives = 48/65 (73%), Gaps = 1/65 (1%)
Query: 43 KKDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDADQVEKF 102
KKDIHP +Y DAKV CNGE+VMTTG TQ E VDVWSGNH F+ G + + + +V++F
Sbjct: 3 KKDIHPNWYPDAKVICNGEVVMTTGSTQPEIHVDVWSGNHPFFTGTQKILDTEG-RVDRF 61
Query: 103 RQKFG 107
+K+G
Sbjct: 62 MRKYG 66
>sp|A9BCL9|RL31_PROM4 50S ribosomal protein L31 OS=Prochlorococcus marinus (strain MIT
9211) GN=rpmE PE=3 SV=1
Length = 94
Score = 80.5 bits (197), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 36/65 (55%), Positives = 48/65 (73%), Gaps = 1/65 (1%)
Query: 43 KKDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDADQVEKF 102
K+DIHP +Y DAKV CNGE+VMTTG TQ E VDVWSGNH F+ G + + + +V++F
Sbjct: 3 KEDIHPTWYPDAKVICNGEVVMTTGSTQPEIHVDVWSGNHPFFTGTQKILDTEG-RVDRF 61
Query: 103 RQKFG 107
+K+G
Sbjct: 62 MRKYG 66
>sp|B2ITM6|RL31_NOSP7 50S ribosomal protein L31 OS=Nostoc punctiforme (strain ATCC 29133
/ PCC 73102) GN=rpmE PE=3 SV=1
Length = 80
Score = 80.5 bits (197), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 36/65 (55%), Positives = 48/65 (73%), Gaps = 1/65 (1%)
Query: 43 KKDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDADQVEKF 102
K DIHP++Y DAKVYCNG++VMT G T+ E VDVWSGNH FY G + + + +VE+F
Sbjct: 3 KADIHPKWYPDAKVYCNGQVVMTIGSTKPELHVDVWSGNHPFYTGTQKIIDTEG-RVERF 61
Query: 103 RQKFG 107
+K+G
Sbjct: 62 LRKYG 66
>sp|Q7V519|RL31_PROMM 50S ribosomal protein L31 OS=Prochlorococcus marinus (strain MIT
9313) GN=rpmE PE=3 SV=1
Length = 93
Score = 80.1 bits (196), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 36/65 (55%), Positives = 47/65 (72%), Gaps = 1/65 (1%)
Query: 43 KKDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDADQVEKF 102
K DIHP +Y DAKV CNGE+VMTTG TQ E VDVWSGNH F+ G + + + +V++F
Sbjct: 3 KPDIHPNWYPDAKVICNGEVVMTTGSTQPELHVDVWSGNHPFFTGTQKILDTEG-RVDRF 61
Query: 103 RQKFG 107
+K+G
Sbjct: 62 MRKYG 66
>sp|B1XJH9|RL31_SYNP2 50S ribosomal protein L31 OS=Synechococcus sp. (strain ATCC 27264 /
PCC 7002 / PR-6) GN=rpmE PE=3 SV=1
Length = 76
Score = 79.7 bits (195), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 36/68 (52%), Positives = 49/68 (72%), Gaps = 1/68 (1%)
Query: 43 KKDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDADQVEKF 102
K DIHP++Y DAKV CNGE+VMT G TQ E V++WSGNH FY G + + + +V++F
Sbjct: 3 KADIHPEWYPDAKVICNGEVVMTIGSTQPEINVEIWSGNHPFYTGTQKIIDTEG-RVDRF 61
Query: 103 RQKFGGLS 110
+K+G LS
Sbjct: 62 LRKYGMLS 69
>sp|Q0ID33|RL31_SYNS3 50S ribosomal protein L31 OS=Synechococcus sp. (strain CC9311)
GN=rpmE PE=3 SV=1
Length = 88
Score = 79.7 bits (195), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 36/65 (55%), Positives = 47/65 (72%), Gaps = 1/65 (1%)
Query: 43 KKDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDADQVEKF 102
K DIHP +Y DAKV CNGE+VMTTG TQ E VDVWSGNH F+ G + + + +V++F
Sbjct: 3 KPDIHPTWYPDAKVICNGEVVMTTGSTQPEINVDVWSGNHPFFTGTQKILDTEG-RVDRF 61
Query: 103 RQKFG 107
+K+G
Sbjct: 62 MRKYG 66
>sp|A2CC56|RL31_PROM3 50S ribosomal protein L31 OS=Prochlorococcus marinus (strain MIT
9303) GN=rpmE PE=3 SV=1
Length = 93
Score = 79.7 bits (195), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 36/65 (55%), Positives = 47/65 (72%), Gaps = 1/65 (1%)
Query: 43 KKDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDADQVEKF 102
K DIHP +Y DAKV CNGE+VMTTG TQ E VDVWSGNH F+ G + + + +V++F
Sbjct: 3 KPDIHPNWYPDAKVICNGEVVMTTGSTQPELHVDVWSGNHPFFTGTQKILDTEG-RVDRF 61
Query: 103 RQKFG 107
+K+G
Sbjct: 62 MRKYG 66
>sp|Q8YPK8|RL31_NOSS1 50S ribosomal protein L31 OS=Nostoc sp. (strain PCC 7120 / UTEX
2576) GN=rpmE PE=3 SV=1
Length = 79
Score = 79.3 bits (194), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 36/66 (54%), Positives = 50/66 (75%), Gaps = 3/66 (4%)
Query: 43 KKDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDAD-QVEK 101
K DIHP++Y +AKVYCNG++VMT G T+ E VDVWSGNH FY G + ++D + +VE+
Sbjct: 3 KSDIHPKWYPEAKVYCNGQVVMTVGSTKPELHVDVWSGNHPFYTGTQK--IIDTEGRVER 60
Query: 102 FRQKFG 107
F +K+G
Sbjct: 61 FLRKYG 66
>sp|Q3MF92|RL31_ANAVT 50S ribosomal protein L31 OS=Anabaena variabilis (strain ATCC 29413
/ PCC 7937) GN=rpmE PE=3 SV=1
Length = 79
Score = 79.3 bits (194), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 36/66 (54%), Positives = 50/66 (75%), Gaps = 3/66 (4%)
Query: 43 KKDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDAD-QVEK 101
K DIHP++Y +AKVYCNG++VMT G T+ E VDVWSGNH FY G + ++D + +VE+
Sbjct: 3 KSDIHPKWYPEAKVYCNGQVVMTVGSTKPELHVDVWSGNHPFYTGTQK--IIDTEGRVER 60
Query: 102 FRQKFG 107
F +K+G
Sbjct: 61 FLRKYG 66
>sp|Q3AMQ8|RL31_SYNSC 50S ribosomal protein L31 OS=Synechococcus sp. (strain CC9605)
GN=rpmE PE=3 SV=1
Length = 83
Score = 79.3 bits (194), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 36/65 (55%), Positives = 47/65 (72%), Gaps = 1/65 (1%)
Query: 43 KKDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDADQVEKF 102
K DIHP +Y DAKV CNGE+VMTTG TQ E VDVWSGNH F+ G + + + +V++F
Sbjct: 3 KPDIHPTWYPDAKVICNGEVVMTTGATQPEIHVDVWSGNHPFFTGTQKILDTEG-RVDRF 61
Query: 103 RQKFG 107
+K+G
Sbjct: 62 MKKYG 66
>sp|Q3AW65|RL31_SYNS9 50S ribosomal protein L31 OS=Synechococcus sp. (strain CC9902)
GN=rpmE PE=3 SV=1
Length = 79
Score = 79.0 bits (193), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 36/65 (55%), Positives = 47/65 (72%), Gaps = 1/65 (1%)
Query: 43 KKDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDADQVEKF 102
K DIHP +Y DAKV CNGE+VMTTG TQ E VDVWSGNH F+ G + + + +V++F
Sbjct: 3 KSDIHPTWYPDAKVICNGEVVMTTGATQPEIHVDVWSGNHPFFTGTQKILDTEG-RVDRF 61
Query: 103 RQKFG 107
+K+G
Sbjct: 62 MKKYG 66
>sp|B0C425|RL31_ACAM1 50S ribosomal protein L31 OS=Acaryochloris marina (strain MBIC
11017) GN=rpmE PE=3 SV=1
Length = 85
Score = 79.0 bits (193), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 37/69 (53%), Positives = 52/69 (75%), Gaps = 2/69 (2%)
Query: 43 KKDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDADQVEKF 102
K DIHP++Y +AKVYC+GE+VMT G TQ+E VDVWSGNH F+ G + + + +VE+F
Sbjct: 3 KPDIHPKWYPEAKVYCDGEVVMTVGSTQEELHVDVWSGNHPFFTGTQKIIDTEG-RVERF 61
Query: 103 RQKFGGLSE 111
+K+ G+SE
Sbjct: 62 MRKY-GMSE 69
>sp|Q7U4H3|RL31_SYNPX 50S ribosomal protein L31 OS=Synechococcus sp. (strain WH8102)
GN=rpmE PE=3 SV=1
Length = 86
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 36/65 (55%), Positives = 47/65 (72%), Gaps = 1/65 (1%)
Query: 43 KKDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDADQVEKF 102
K DIHP +Y DAKV CNGE+VMTTG TQ E VDVWSGNH F+ G + + + +V++F
Sbjct: 3 KPDIHPTWYPDAKVICNGEVVMTTGSTQPEIHVDVWSGNHPFFTGTQKILDTEG-RVDRF 61
Query: 103 RQKFG 107
+K+G
Sbjct: 62 MKKYG 66
>sp|Q318L2|RL31_PROM9 50S ribosomal protein L31 OS=Prochlorococcus marinus (strain MIT
9312) GN=rpmE PE=3 SV=2
Length = 86
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 35/65 (53%), Positives = 48/65 (73%), Gaps = 1/65 (1%)
Query: 43 KKDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDADQVEKF 102
K +IHP++Y DAKV CNGE+VMTTG TQ E VDVWSGNH F+ G + + + +V++F
Sbjct: 3 KSEIHPKWYPDAKVICNGEVVMTTGSTQPELHVDVWSGNHPFFTGTQKILDTEG-RVDRF 61
Query: 103 RQKFG 107
+K+G
Sbjct: 62 MKKYG 66
>sp|A2BTB0|RL31_PROMS 50S ribosomal protein L31 OS=Prochlorococcus marinus (strain
AS9601) GN=rpmE PE=3 SV=1
Length = 86
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 35/65 (53%), Positives = 48/65 (73%), Gaps = 1/65 (1%)
Query: 43 KKDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDADQVEKF 102
K +IHP++Y DAKV CNGE+VMTTG TQ E VDVWSGNH F+ G + + + +V++F
Sbjct: 3 KSEIHPKWYPDAKVICNGEVVMTTGSTQPELHVDVWSGNHPFFTGTQKILDTEG-RVDRF 61
Query: 103 RQKFG 107
+K+G
Sbjct: 62 MKKYG 66
>sp|Q2JL69|RL31_SYNJB 50S ribosomal protein L31 OS=Synechococcus sp. (strain
JA-2-3B'a(2-13)) GN=rpmE PE=3 SV=1
Length = 74
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 37/66 (56%), Positives = 50/66 (75%), Gaps = 3/66 (4%)
Query: 43 KKDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDAD-QVEK 101
KK +HPQ+Y +AKV CNGE+VMT G T+ E VDVWSGNH F+ G S ++D++ +VEK
Sbjct: 3 KKGLHPQWYPEAKVICNGEVVMTVGSTKPELKVDVWSGNHPFFTG--SQKIIDSEGRVEK 60
Query: 102 FRQKFG 107
F +K+G
Sbjct: 61 FMRKYG 66
>sp|A8G734|RL31_PROM2 50S ribosomal protein L31 OS=Prochlorococcus marinus (strain MIT
9215) GN=rpmE PE=3 SV=1
Length = 86
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 35/65 (53%), Positives = 48/65 (73%), Gaps = 1/65 (1%)
Query: 43 KKDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDADQVEKF 102
K +IHP++Y DAKV CNGE+VMTTG TQ E VDVWSGNH F+ G + + + +V++F
Sbjct: 3 KSEIHPKWYPDAKVICNGEVVMTTGSTQPELHVDVWSGNHPFFTGTQKILDTEG-RVDRF 61
Query: 103 RQKFG 107
+K+G
Sbjct: 62 MKKYG 66
>sp|A3PF20|RL31_PROM0 50S ribosomal protein L31 OS=Prochlorococcus marinus (strain MIT
9301) GN=rpmE PE=3 SV=1
Length = 86
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 35/65 (53%), Positives = 48/65 (73%), Gaps = 1/65 (1%)
Query: 43 KKDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDADQVEKF 102
K +IHP++Y DAKV CNGE+VMTTG TQ E VDVWSGNH F+ G + + + +V++F
Sbjct: 3 KSEIHPKWYPDAKVICNGEVVMTTGSTQPELHVDVWSGNHPFFTGTQKILDTEG-RVDRF 61
Query: 103 RQKFG 107
+K+G
Sbjct: 62 MKKYG 66
>sp|Q46IT7|RL31_PROMT 50S ribosomal protein L31 OS=Prochlorococcus marinus (strain
NATL2A) GN=rpmE PE=3 SV=1
Length = 86
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 36/68 (52%), Positives = 48/68 (70%), Gaps = 1/68 (1%)
Query: 43 KKDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDADQVEKF 102
K DIHP +Y +AKV CNGE+VMTTG TQ E VDVWSGNH F+ G + + + +V++F
Sbjct: 3 KSDIHPTWYPEAKVICNGEVVMTTGATQPEIQVDVWSGNHPFFTGTQKILDTEG-RVDRF 61
Query: 103 RQKFGGLS 110
+K+G S
Sbjct: 62 MRKYGMAS 69
>sp|Q2JUK0|RL31_SYNJA 50S ribosomal protein L31 OS=Synechococcus sp. (strain JA-3-3Ab)
GN=rpmE PE=3 SV=1
Length = 73
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/66 (56%), Positives = 50/66 (75%), Gaps = 3/66 (4%)
Query: 43 KKDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDAD-QVEK 101
KK IHPQ+Y +AKV CNGE+VMT G T+ E VDVWSGNH F+ G S ++D++ +V+K
Sbjct: 3 KKGIHPQWYPEAKVICNGEVVMTVGSTKPELKVDVWSGNHPFFTG--SQKIIDSEGRVDK 60
Query: 102 FRQKFG 107
F +K+G
Sbjct: 61 FMRKYG 66
>sp|B7K219|RL31_CYAP8 50S ribosomal protein L31 OS=Cyanothece sp. (strain PCC 8801)
GN=rpmE PE=3 SV=1
Length = 82
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 53/79 (67%), Gaps = 1/79 (1%)
Query: 43 KKDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDADQVEKF 102
K DIHP +Y +AK+ CNGE+VMT G TQ E V+VWSGNH FY G + + + ++++F
Sbjct: 3 KADIHPTWYPEAKIICNGEVVMTVGSTQPEIHVEVWSGNHPFYTGTQKMIDTEG-RIDRF 61
Query: 103 RQKFGGLSEIMEIPVLKGE 121
++++G L + P KG+
Sbjct: 62 QKRYGNLGKGGSKPNKKGD 80
>sp|Q110D6|RL31_TRIEI 50S ribosomal protein L31 OS=Trichodesmium erythraeum (strain
IMS101) GN=rpmE PE=3 SV=1
Length = 90
Score = 77.4 bits (189), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 35/65 (53%), Positives = 49/65 (75%), Gaps = 3/65 (4%)
Query: 43 KKDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDAD-QVEK 101
K DIHP++Y +AKVYCNGE+VMT G TQ E VDVWSGNH ++ G + ++D + +VE+
Sbjct: 3 KADIHPEWYPEAKVYCNGEVVMTVGSTQPEIHVDVWSGNHPYFTGTQK--IIDTEGRVER 60
Query: 102 FRQKF 106
F +K+
Sbjct: 61 FMRKY 65
>sp|Q7UZX0|RL31_PROMP 50S ribosomal protein L31 OS=Prochlorococcus marinus subsp.
pastoris (strain CCMP1986 / MED4) GN=rpmE PE=3 SV=1
Length = 86
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 34/65 (52%), Positives = 48/65 (73%), Gaps = 1/65 (1%)
Query: 43 KKDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDADQVEKF 102
K +IHP++Y DAKV CNGE+VMTTG T+ E VDVWSGNH F+ G + + + +V++F
Sbjct: 3 KSEIHPKWYPDAKVICNGEVVMTTGSTKPELHVDVWSGNHPFFTGTQKILDTEG-RVDRF 61
Query: 103 RQKFG 107
+K+G
Sbjct: 62 MKKYG 66
>sp|A5GVY8|RL31_SYNR3 50S ribosomal protein L31 OS=Synechococcus sp. (strain RCC307)
GN=rpmE PE=3 SV=1
Length = 92
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 35/65 (53%), Positives = 46/65 (70%), Gaps = 1/65 (1%)
Query: 43 KKDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDADQVEKF 102
K DIHP +Y DAKV CNGE+VMTTG T E VDVWSGNH F+ G + + + +V++F
Sbjct: 3 KPDIHPTWYPDAKVICNGEVVMTTGSTTPELHVDVWSGNHPFFTGTQKILDTEG-RVDRF 61
Query: 103 RQKFG 107
+K+G
Sbjct: 62 MRKYG 66
>sp|O46917|RK31_GUITH 50S ribosomal protein L31, chloroplastic OS=Guillardia theta
GN=rpl31 PE=3 SV=1
Length = 72
Score = 77.0 bits (188), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 49/65 (75%), Gaps = 1/65 (1%)
Query: 43 KKDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDADQVEKF 102
K+++HP++Y +AKVYC+G+L+MT G T+ E VD+WSGNH FY G + + + +VE+F
Sbjct: 3 KQNLHPKWYAEAKVYCDGQLIMTIGSTKSELNVDIWSGNHPFYTGSQKMLDTEG-RVERF 61
Query: 103 RQKFG 107
+K+G
Sbjct: 62 MRKYG 66
>sp|A2BYQ8|RL31_PROM5 50S ribosomal protein L31 OS=Prochlorococcus marinus (strain MIT
9515) GN=rpmE PE=3 SV=1
Length = 86
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 34/65 (52%), Positives = 48/65 (73%), Gaps = 1/65 (1%)
Query: 43 KKDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDADQVEKF 102
K +IHP++Y DAKV CNGE+VMTTG T+ E VDVWSGNH F+ G + + + +V++F
Sbjct: 3 KSEIHPKWYPDAKVICNGEVVMTTGSTKPELHVDVWSGNHPFFTGTQKILDTEG-RVDRF 61
Query: 103 RQKFG 107
+K+G
Sbjct: 62 MKKYG 66
>sp|A5GIR7|RL31_SYNPW 50S ribosomal protein L31 OS=Synechococcus sp. (strain WH7803)
GN=rpmE PE=3 SV=1
Length = 85
Score = 76.3 bits (186), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 35/65 (53%), Positives = 47/65 (72%), Gaps = 1/65 (1%)
Query: 43 KKDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDADQVEKF 102
K +IHP +Y DAKV CNGE+VMTTG TQ E VDVWSGNH F+ G + + + +V++F
Sbjct: 3 KPEIHPTWYPDAKVICNGEVVMTTGSTQPEIHVDVWSGNHPFFTGTQKILDTEG-RVDRF 61
Query: 103 RQKFG 107
+K+G
Sbjct: 62 MRKYG 66
>sp|A2C4X2|RL31_PROM1 50S ribosomal protein L31 OS=Prochlorococcus marinus (strain
NATL1A) GN=rpmE PE=3 SV=1
Length = 86
Score = 75.9 bits (185), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 34/64 (53%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Query: 43 KKDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDADQVEKF 102
K DIHP +Y +AKV CNGE+VMTTG TQ E VDVWSGNH F+ G + + + +V++F
Sbjct: 3 KSDIHPTWYPEAKVICNGEVVMTTGATQPEIQVDVWSGNHPFFTGTQKILDTEG-RVDRF 61
Query: 103 RQKF 106
+K+
Sbjct: 62 MRKY 65
>sp|Q9TLV5|RK31_CYACA 50S ribosomal protein L31, chloroplastic OS=Cyanidium caldarium
GN=rpl31 PE=3 SV=1
Length = 75
Score = 75.9 bits (185), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 51/73 (69%), Gaps = 3/73 (4%)
Query: 43 KKDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDAD-QVEK 101
KK+IHPQ+YE+AK YCNGE+V G T+ E D+WSGNH FY+G + +VD + +++K
Sbjct: 3 KKNIHPQWYEEAKFYCNGEIVKIIGSTRMEINADIWSGNHPFYIGTQK--IVDTEGRIDK 60
Query: 102 FRQKFGGLSEIME 114
F +K+ SE E
Sbjct: 61 FIRKYNLNSENSE 73
>sp|B7KI16|RL31_CYAP7 50S ribosomal protein L31 OS=Cyanothece sp. (strain PCC 7424)
GN=rpmE PE=3 SV=1
Length = 83
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 34/69 (49%), Positives = 48/69 (69%), Gaps = 1/69 (1%)
Query: 43 KKDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDADQVEKF 102
K DIHP +Y +AKV CNGE+VMT G TQ E V+VWSGNH FY G + + + +V++F
Sbjct: 3 KADIHPTWYPEAKVICNGEVVMTVGSTQPEIHVEVWSGNHPFYTGTQKMIDTEG-RVDRF 61
Query: 103 RQKFGGLSE 111
+K+G + +
Sbjct: 62 LRKYGMIDK 70
>sp|P73292|RL31_SYNY3 50S ribosomal protein L31 OS=Synechocystis sp. (strain PCC 6803 /
Kazusa) GN=rpmE PE=3 SV=1
Length = 81
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 32/65 (49%), Positives = 46/65 (70%), Gaps = 1/65 (1%)
Query: 43 KKDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDADQVEKF 102
K DIHP +Y DAKV CNGE++MT G T+ E V++WSGNH FY G + + + +V++F
Sbjct: 3 KADIHPTWYPDAKVTCNGEVIMTVGSTKPEINVEIWSGNHPFYTGTQKIIDTEG-RVDRF 61
Query: 103 RQKFG 107
+K+G
Sbjct: 62 MRKYG 66
>sp|P51290|RK31_PORPU 50S ribosomal protein L31, chloroplastic OS=Porphyra purpurea
GN=rpl31 PE=3 SV=1
Length = 70
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 34/65 (52%), Positives = 48/65 (73%), Gaps = 3/65 (4%)
Query: 43 KKDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDAD-QVEK 101
K DIHP +Y DAKVYC+G+L+MT G T+ E VD+WSGNH F+ G S ++D + +VE+
Sbjct: 3 KVDIHPIWYPDAKVYCDGQLIMTIGSTKPELHVDIWSGNHPFFTG--SQRIIDTEGRVER 60
Query: 102 FRQKF 106
F +K+
Sbjct: 61 FMRKY 65
>sp|Q1XDJ8|RK31_PORYE 50S ribosomal protein L31, chloroplastic OS=Porphyra yezoensis
GN=rpl31 PE=3 SV=1
Length = 70
Score = 73.2 bits (178), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 32/65 (49%), Positives = 48/65 (73%), Gaps = 3/65 (4%)
Query: 43 KKDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDAD-QVEK 101
K +IHP +Y +AKVYC+G+L+MT G T+ E VD+WSGNH F+ G S ++D + +VE+
Sbjct: 3 KDNIHPNWYPEAKVYCDGQLIMTIGSTKPELHVDIWSGNHPFFTG--SQRIIDTEGRVER 60
Query: 102 FRQKF 106
F +K+
Sbjct: 61 FMRKY 65
>sp|Q6B8X7|RK31_GRATL 50S ribosomal protein L31, chloroplastic OS=Gracilaria
tenuistipitata var. liui GN=rpl31 PE=3 SV=1
Length = 79
Score = 72.8 bits (177), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 47/66 (71%), Gaps = 3/66 (4%)
Query: 43 KKDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDAD-QVEK 101
+K IHP+++ D KVYC+G+ VMT G TQ E VD+WSGNH F+ G S ++D + +VEK
Sbjct: 3 QKSIHPKWFNDTKVYCDGKHVMTVGSTQAELHVDIWSGNHPFFTG--SQRIIDTEGRVEK 60
Query: 102 FRQKFG 107
F +K+
Sbjct: 61 FMRKYN 66
>sp|Q4G345|RK31_EMIHU 50S ribosomal protein L31, chloroplastic OS=Emiliania huxleyi
GN=rpl31 PE=3 SV=1
Length = 70
Score = 72.4 bits (176), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 46/66 (69%), Gaps = 3/66 (4%)
Query: 43 KKDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDAD-QVEK 101
K IHP +Y +AKVYC+G+LVM G T+ VD+WSGNH FY G S ++D + +VE+
Sbjct: 3 KSAIHPDWYPNAKVYCDGQLVMKVGATKPTLNVDIWSGNHPFYTG--SQTIIDTEGRVER 60
Query: 102 FRQKFG 107
F +K+G
Sbjct: 61 FMRKYG 66
>sp|Q5MIM5|RK31_PALPL 50S ribosomal protein L31, chloroplastic OS=Palmaria palmata
GN=rpl31 PE=3 SV=1
Length = 73
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 47/64 (73%), Gaps = 3/64 (4%)
Query: 45 DIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDAD-QVEKFR 103
DIHP++Y D+KVYC+G+ +MT G T+ E VD+WSGNH F+ G S ++D + +VE+F
Sbjct: 5 DIHPEWYNDSKVYCDGKHIMTIGSTKPELHVDIWSGNHPFFTG--SQRIIDTEGRVERFM 62
Query: 104 QKFG 107
+K+
Sbjct: 63 RKYN 66
>sp|B0JY33|RL31_MICAN 50S ribosomal protein L31 OS=Microcystis aeruginosa (strain
NIES-843) GN=rpmE PE=3 SV=1
Length = 77
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 44/63 (69%), Gaps = 1/63 (1%)
Query: 44 KDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDADQVEKFR 103
K IHP +Y +AKV CNGELVMT G T+ E V+VWSGNH FY G + + + +V++F
Sbjct: 3 KKIHPTWYPEAKVICNGELVMTVGSTKPEIHVEVWSGNHPFYTGTQKMIDTEG-RVDRFL 61
Query: 104 QKF 106
+K+
Sbjct: 62 RKY 64
>sp|Q85FU0|RK31_CYAME 50S ribosomal protein L31, chloroplastic OS=Cyanidioschyzon merolae
GN=rpl31 PE=3 SV=1
Length = 67
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 44/65 (67%), Gaps = 1/65 (1%)
Query: 43 KKDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDADQVEKF 102
KK+IHP++Y+ + VY NG+ ++T G T+ E V+VWS H FY G + + + ++EKF
Sbjct: 2 KKNIHPKWYKHSIVYGNGQQILTVGSTKPELHVEVWSSIHPFYTGSQKQLDTEG-RIEKF 60
Query: 103 RQKFG 107
+K+G
Sbjct: 61 MRKYG 65
>sp|A0T0K3|RK31_PHATC 50S ribosomal protein L31, chloroplastic OS=Phaeodactylum
tricornutum (strain CCAP 1055/1) GN=rpl31 PE=3 SV=1
Length = 72
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 43/65 (66%), Gaps = 3/65 (4%)
Query: 43 KKDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDAD-QVEK 101
K DIHP ++E+ KV C+G+ + G T+ E +D+W NH FY S V++D++ +VEK
Sbjct: 3 KSDIHPTWFENTKVLCDGKPLCLIGSTKSELQIDMWLANHPFY--TNSQVLIDSEGRVEK 60
Query: 102 FRQKF 106
F +K+
Sbjct: 61 FMKKY 65
>sp|P49563|RK31_ODOSI 50S ribosomal protein L31, chloroplastic OS=Odontella sinensis
GN=rpl31 PE=3 SV=1
Length = 72
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 41/66 (62%), Gaps = 3/66 (4%)
Query: 43 KKDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDAD-QVEK 101
K +IHP ++ + + C+G+ + G T+ E VD+W NH FY S ++D++ +VE+
Sbjct: 3 KPEIHPTWFNETPIVCDGKPLCYIGSTKSELQVDIWLANHPFYTD--SQTIIDSEGRVER 60
Query: 102 FRQKFG 107
F +K+G
Sbjct: 61 FMKKYG 66
>sp|A0T0Z7|RK31_THAPS 50S ribosomal protein L31, chloroplastic OS=Thalassiosira
pseudonana GN=rpl31 PE=3 SV=1
Length = 72
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 42/66 (63%), Gaps = 3/66 (4%)
Query: 43 KKDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDAD-QVEK 101
K +IHP ++ +A V G+ + + G T+ + VDVW GNH FY S +VD++ +V++
Sbjct: 3 KSEIHPTWFSNAPVLSEGKTLCSIGSTKPQLQVDVWLGNHPFYT--NSQTLVDSEGRVDR 60
Query: 102 FRQKFG 107
F +K+G
Sbjct: 61 FMKKYG 66
>sp|Q97F64|RL31_CLOAB 50S ribosomal protein L31 OS=Clostridium acetobutylicum (strain
ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787)
GN=rpmE PE=3 SV=1
Length = 70
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 43 KKDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDADQVEKF 102
+KDI P++++DA V C TTG T+KE VD+ S H F+ G + V V +VEKF
Sbjct: 2 QKDIQPEYHQDAVVKCACGNTFTTGSTKKELKVDICSKCHPFFTGQQKIVDV-GGRVEKF 60
Query: 103 RQKFG 107
R+K+
Sbjct: 61 RKKYN 65
>sp|Q1J0V5|RL31_DEIGD 50S ribosomal protein L31 OS=Deinococcus geothermalis (strain DSM
11300) GN=rpmE PE=3 SV=1
Length = 72
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 43 KKDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDADQVEKF 102
KKDIHP+ AK+ G++VM T T+ E VDVWSG H F+ G V + +V+KF
Sbjct: 2 KKDIHPKAVP-AKIIYQGKVVMETLSTRPEIHVDVWSGAHPFWTGEERFVDTEG-RVDKF 59
Query: 103 RQKFG 107
++FG
Sbjct: 60 NKRFG 64
>sp|Q2RFV8|RL31_MOOTA 50S ribosomal protein L31 OS=Moorella thermoacetica (strain ATCC
39073) GN=rpmE PE=3 SV=1
Length = 66
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 43 KKDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDADQVEKF 102
K +IHP Y A++ C V+ T T+K+ V++ S H FY G R VV ++E+F
Sbjct: 2 KPNIHPD-YGPARIICACGNVIETRSTKKDIRVEICSQCHPFYTGSRQRVVERGGRIERF 60
Query: 103 RQKFG 107
RQK+G
Sbjct: 61 RQKYG 65
>sp|A5N3K1|RL31_CLOK5 50S ribosomal protein L31 OS=Clostridium kluyveri (strain ATCC 8527
/ DSM 555 / NCIMB 10680) GN=rpmE PE=3 SV=1
Length = 70
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 40/65 (61%), Gaps = 3/65 (4%)
Query: 43 KKDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDA-DQVEK 101
KK IHP++Y D+ V C TTG TQKE V++ S H F+ G + +VDA +V++
Sbjct: 2 KKGIHPEYYHDSVVKCACGNTFTTGSTQKELKVEICSKCHPFFTGKQK--LVDAGGRVDR 59
Query: 102 FRQKF 106
F +KF
Sbjct: 60 FLKKF 64
>sp|B9DX85|RL31_CLOK1 50S ribosomal protein L31 OS=Clostridium kluyveri (strain NBRC
12016) GN=rpmE PE=3 SV=1
Length = 70
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 40/65 (61%), Gaps = 3/65 (4%)
Query: 43 KKDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDA-DQVEK 101
KK IHP++Y D+ V C TTG TQKE V++ S H F+ G + +VDA +V++
Sbjct: 2 KKGIHPEYYHDSVVKCACGNTFTTGSTQKELKVEICSKCHPFFTGKQK--LVDAGGRVDR 59
Query: 102 FRQKF 106
F +KF
Sbjct: 60 FLKKF 64
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.134 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,368,678
Number of Sequences: 539616
Number of extensions: 2193717
Number of successful extensions: 5044
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 383
Number of HSP's that attempted gapping in prelim test: 4823
Number of HSP's gapped (non-prelim): 512
length of query: 139
length of database: 191,569,459
effective HSP length: 104
effective length of query: 35
effective length of database: 135,449,395
effective search space: 4740728825
effective search space used: 4740728825
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)