Query 032493
Match_columns 139
No_of_seqs 140 out of 1042
Neff 3.9
Searched_HMMs 29240
Date Tue Mar 26 00:25:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032493.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032493hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bbo_1 Ribosomal protein L31; 100.0 2.3E-46 8E-51 288.5 -6.4 137 1-139 1-144 (144)
2 1nkw_Y 50S ribosomal protein L 100.0 4.5E-35 1.5E-39 203.8 7.5 69 42-112 1-69 (73)
3 3v2d_4 50S ribosomal protein L 100.0 7.3E-35 2.5E-39 202.0 5.4 66 42-109 1-66 (71)
4 3f1f_4 50S ribosomal protein L 100.0 3.4E-34 1.2E-38 208.8 2.4 72 36-109 21-92 (97)
5 1vs6_Z 50S ribosomal protein L 100.0 3E-34 1E-38 198.1 -2.5 66 42-109 1-67 (70)
6 2ket_A Cathelicidin-6; antimic 23.2 31 0.0011 19.2 1.1 13 97-109 1-13 (27)
7 3cuc_A Protein of unknown func 20.2 33 0.0011 26.9 1.1 16 80-103 191-206 (291)
8 2f6s_A Cell filamentation prot 17.8 41 0.0014 25.6 1.1 14 82-103 118-131 (201)
9 1zrt_D Cytochrome C1; cytochro 15.8 32 0.0011 28.2 0.0 13 72-84 28-40 (258)
10 3eqx_A FIC domain containing t 15.5 49 0.0017 27.6 1.1 15 81-103 198-212 (373)
No 1
>3bbo_1 Ribosomal protein L31; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=100.00 E-value=2.3e-46 Score=288.53 Aligned_cols=137 Identities=66% Similarity=1.093 Sum_probs=69.3
Q ss_pred CCccCcccceeccCCCCCcCcccc-------ccccccCccccccccccCCCCCCCCCcceeEEEeCCCeEEEEeeeeCcE
Q 032493 1 MAQTLPNTFFQIKPSAPILPTRKV-------KNCAATGSGYRTRAVTCRKKDIHPQFYEDAKVYCNGELVMTTGGTQKEY 73 (139)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~MKK~IHP~y~~vv~v~cs~g~~~~~gST~~~i 73 (139)
||++|+|+|+|+.|-.|++.-|+- ..-+.+.|.+.++++..||+||||+|+++++++|+|+++|+++||+++|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~MKk~IHPeY~~Vv~v~cs~g~~f~t~ST~~~i 80 (144)
T 3bbo_1 1 MAVSLPNSFLQISPCVPSLQLRKPVMAAVKGGKQSVRRSSNTVVQITCRKKELHPEFHEDAKVYCNGELVMTTGGTKKEY 80 (144)
T ss_dssp -------------------------------------------------CTTTCCCCCHHHHHCSSSCTTTSCSSCSCSS
T ss_pred CccccccceeeccccCcchhccccccccccccccchhhcccceeeeeccCCCCCCCCEEeEEEEcCCCeEEEEEecCceE
Confidence 899999999999998888533221 1235677888999999999999999999999999999999999999999
Q ss_pred EEeecCCCCCcccCceeeeeecchhHHHHHHHhcCCcccccccccccceecCCccccccccCCCCC
Q 032493 74 VVDVWSGNHAFYLGGRSAVVVDADQVEKFRQKFGGLSEIMEIPVLKGEIVLPPKRKSAAAKGGKKK 139 (139)
Q Consensus 74 ~vDIcS~cHPFYTGkqk~~vdt~GRVeKFnKKfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (139)
+|||||+|||||||+|++++|++|||||||+||+.+....++|++.|+.++|+++++.++ |+||
T Consensus 81 ~VDIcS~cHPFYTGkqkk~vDt~GRVeKF~KRyg~~~~~~~~~v~~g~~~~p~~~~k~~~--g~kk 144 (144)
T 3bbo_1 81 VVDVWSGNHPFYLGNRSALMVDADQVEKFRKRFAGLSEIMEIPVLKGEIIMPTKKSKGPK--GKKK 144 (144)
T ss_dssp SCCSSCCCCCSSSSSSSCCCCCCCCCCCSSCCCCCCSSCCC-------------------------
T ss_pred EeeecCCCCccEeCceeeEecccccHHHHHHHHhccccccccccccCccccccccccccc--ccCC
Confidence 999999999999998865899999999999999999999999999999999999955554 4443
No 2
>1nkw_Y 50S ribosomal protein L31; ribosome, large subunit, X- RAY structure, peptidyl-transferase, peptide bond formation; 3.10A {Deinococcus radiodurans} SCOP: i.1.1.2 PDB: 1nwx_Y* 1nwy_Y* 1pnu_Y 1pny_Y 1sm1_Y* 1vor_1 1vou_1 1vow_1 1voy_1 1vp0_1 1xbp_Y* 1yl3_4 2b66_4 2b9n_4 2b9p_4
Probab=100.00 E-value=4.5e-35 Score=203.79 Aligned_cols=69 Identities=36% Similarity=0.642 Sum_probs=63.9
Q ss_pred CCCCCCCCCcceeEEEeCCCeEEEEeeeeCcEEEeecCCCCCcccCceeeeeecchhHHHHHHHhcCCccc
Q 032493 42 RKKDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDADQVEKFRQKFGGLSEI 112 (139)
Q Consensus 42 MKK~IHP~y~~vv~v~cs~g~~~~~gST~~~i~vDIcS~cHPFYTGkqk~~vdt~GRVeKFnKKfg~~~~~ 112 (139)
||+||||+|++ +.+.|+||+.|+++||.++|+|||||+|||||||+|+ ++|++||||||++||+.+...
T Consensus 1 MKk~IHP~y~~-v~~~~s~g~~f~t~ST~~~i~vdi~s~~HPFyTGkqk-~vdt~GRVekF~kry~~~~~~ 69 (73)
T 1nkw_Y 1 MQKDLHPKAVP-CKIIYQGQVVMETMSTRPEIHVDVWSGVHPFWTGEER-FLDTEGRVDKFNKRFGDSYRR 69 (73)
T ss_pred CCCCCCCCCEE-EEEEECCCCEEEEcccCCCEEEEECCCCCcCCcCcEE-EEeccccHHHHHHHHhccccc
Confidence 99999999997 6667899999999999999999999999999999987 999999999999999986543
No 3
>3v2d_4 50S ribosomal protein L31; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_3 2hgj_3 2hgu_3 2j03_4 2v47_4 2v49_4 2wdi_4 2wdj_4 2wdl_4 2wdn_4 2wh2_4 2wrj_4 2wrl_4 2wro_4 2wrr_4 2x9s_4 2x9u_4 2xg0_4 2xg2_4 2xqe_4 ...
Probab=100.00 E-value=7.3e-35 Score=201.98 Aligned_cols=66 Identities=33% Similarity=0.579 Sum_probs=43.8
Q ss_pred CCCCCCCCCcceeEEEeCCCeEEEEeeeeCcEEEeecCCCCCcccCceeeeeecchhHHHHHHHhcCC
Q 032493 42 RKKDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDADQVEKFRQKFGGL 109 (139)
Q Consensus 42 MKK~IHP~y~~vv~v~cs~g~~~~~gST~~~i~vDIcS~cHPFYTGkqk~~vdt~GRVeKFnKKfg~~ 109 (139)
||+||||+|++ +.+.|+||+.|+++||.++|+|||||+|||||||+|+ ++|++||||||++||+..
T Consensus 1 MKk~IHP~Y~~-v~v~c~~g~~f~t~ST~~~i~vdi~S~~HPFyTGkqk-~vdt~GRVekF~kryg~~ 66 (71)
T 3v2d_4 1 MKEGIHPKLVP-ARIICGCGNVIETYSTKPEIYVEVCSKCHPFYTGQQR-FVDTEGRVERFQRRYGDS 66 (71)
T ss_dssp CCSSSSCCCEE-EEEEETTSCEEEEEESSSEEEESCCTTTSSSSSCC---------------------
T ss_pred CCCCCCCCCeE-EEEEECCCCEEEeeeeccCEEEEecCCCCCCCCCCEE-EEcccCcHHHHHHHHccc
Confidence 99999999986 6677889999999999999999999999999999987 899999999999999864
No 4
>3f1f_4 50S ribosomal protein L31; RF2, ribosome, termination, tRNA; 3.00A {Thermus thermophilus} PDB: 3d5d_4 3d5b_4 3f1h_4
Probab=99.98 E-value=3.4e-34 Score=208.79 Aligned_cols=72 Identities=31% Similarity=0.529 Sum_probs=27.9
Q ss_pred ccccccCCCCCCCCCcceeEEEeCCCeEEEEeeeeCcEEEeecCCCCCcccCceeeeeecchhHHHHHHHhcCC
Q 032493 36 TRAVTCRKKDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDADQVEKFRQKFGGL 109 (139)
Q Consensus 36 ~~~~~~MKK~IHP~y~~vv~v~cs~g~~~~~gST~~~i~vDIcS~cHPFYTGkqk~~vdt~GRVeKFnKKfg~~ 109 (139)
.++...||+||||+|++ +.+.|+||+.|+++||.++|+|||||+|||||||+|+ ++|++||||||++||+..
T Consensus 21 ~~~~~~MKk~IHP~Y~~-v~v~ct~G~~f~t~ST~~~i~vDI~S~~HPFYTGkqk-~vdt~GRVeKF~kRyg~~ 92 (97)
T 3f1f_4 21 AKKEANVKEGIHPKLVP-ARIICGCGNVIETYSTKPEIYVEVCSKCHPFYTGQQR-FVDTEGRVERFQRRYGDS 92 (97)
T ss_dssp ---------------CC-CEEEETTEEEEECCCSSCCEEESSCTTC----------------------------
T ss_pred hhhhccccCCCCCCCeE-EEEEECCCCEEEeeeeeeEEEEEECCCCCCCCcCCEE-EEcccCcHHHHHHHHccc
Confidence 45778999999999997 5677899999999999999999999999999999987 899999999999999864
No 5
>1vs6_Z 50S ribosomal protein L31; ribosome, kasugamycin; 3.46A {Escherichia coli} SCOP: d.325.1.2 PDB: 1vs8_Z 2aw4_Z 2awb_Z 2j28_Z 2rdo_Z 2vhm_Z 2vhn_Z 3bbx_Z 3e1b_S 3e1d_S 3iyx_A 3iyy_A 3izt_b* 3izu_b* 3j0t_2* 3j0w_2* 3j0y_2* 3j11_2* 3j12_2* 3j14_2*
Probab=99.97 E-value=3e-34 Score=198.13 Aligned_cols=66 Identities=32% Similarity=0.497 Sum_probs=60.8
Q ss_pred CCCCCCCCCcceeEEEeCCCeEEEEeeeeC-cEEEeecCCCCCcccCceeeeeecchhHHHHHHHhcCC
Q 032493 42 RKKDIHPQFYEDAKVYCNGELVMTTGGTQK-EYVVDVWSGNHAFYLGGRSAVVVDADQVEKFRQKFGGL 109 (139)
Q Consensus 42 MKK~IHP~y~~vv~v~cs~g~~~~~gST~~-~i~vDIcS~cHPFYTGkqk~~vdt~GRVeKFnKKfg~~ 109 (139)
||+||||+|+++ .+.|+||+.|+++||.+ +|+|||||+|||||||+|+ ++|++||||||++||+.+
T Consensus 1 MKk~IHP~y~~v-~~~~s~g~~f~t~ST~~~ei~vdi~s~~HPFyTG~qk-~vdt~GRV~kF~kry~~~ 67 (70)
T 1vs6_Z 1 MKKDIHPKYEEI-TASCSCGNVMKIRSTVGHDLNLDVCSKCHPFFTGKQR-DVATGGRVDRFNKRFNIP 67 (70)
T ss_dssp CCCTTSCCCCCC-BCCCCSSCCCCCBCCCCCCCCCBCCSSSCCBCCCCCT-TTTTHHHHSCSSTTTTTT
T ss_pred CCCCCCCCCEEE-EEEECCCCEEEEeecCCCcEeeeecCCCCccCcCcEE-EEeccccHHHHHHHhhcc
Confidence 999999999974 56689999999999975 5999999999999999987 899999999999999975
No 6
>2ket_A Cathelicidin-6; antimicrobial peptide, antibiotic, antimicrobial, fungicide, pyrrolidone carboxylic acid, secreted; NMR {Bos taurus}
Probab=23.23 E-value=31 Score=19.25 Aligned_cols=13 Identities=38% Similarity=0.790 Sum_probs=10.8
Q ss_pred hhHHHHHHHhcCC
Q 032493 97 DQVEKFRQKFGGL 109 (139)
Q Consensus 97 GRVeKFnKKfg~~ 109 (139)
||-.+|.++|..+
T Consensus 1 grfkrfrkkfkkl 13 (27)
T 2ket_A 1 GRFKRFRKKFKKL 13 (27)
T ss_dssp CCHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHH
Confidence 7888999999864
No 7
>3cuc_A Protein of unknown function with A FIC domain; FIC protein family, structural genomics, joint center for ST genomics, JCSG; HET: MSE; 2.71A {Bacteroides thetaiotaomicron vpi-5482}
Probab=20.21 E-value=33 Score=26.86 Aligned_cols=16 Identities=19% Similarity=0.355 Sum_probs=10.9
Q ss_pred CCCCcccCceeeeeecchhHHHHH
Q 032493 80 GNHAFYLGGRSAVVVDADQVEKFR 103 (139)
Q Consensus 80 ~cHPFYTGkqk~~vdt~GRVeKFn 103 (139)
.-|||+-|. ||+.|+-
T Consensus 191 ~IHPF~DGN--------GRt~Rll 206 (291)
T 3cuc_A 191 RIHPFEDGN--------GRIARLL 206 (291)
T ss_dssp HHCCBSSCH--------HHHHHHH
T ss_pred hcCCCcCCC--------hHHHHHH
Confidence 369999884 5665554
No 8
>2f6s_A Cell filamentation protein, putative; structural PSI, protein structure initiative, midwest center for struc genomics, MCSG; 2.50A {Helicobacter pylori} SCOP: a.265.1.1
Probab=17.83 E-value=41 Score=25.63 Aligned_cols=14 Identities=21% Similarity=0.506 Sum_probs=10.1
Q ss_pred CCcccCceeeeeecchhHHHHH
Q 032493 82 HAFYLGGRSAVVVDADQVEKFR 103 (139)
Q Consensus 82 HPFYTGkqk~~vdt~GRVeKFn 103 (139)
|||.-|. ||+.|+-
T Consensus 118 HPF~DGN--------GRt~Rll 131 (201)
T 2f6s_A 118 HPFLEGN--------GRATRIW 131 (201)
T ss_dssp CCSSSCH--------HHHHHHH
T ss_pred ccCCCCC--------hHHHHHH
Confidence 9999884 6666654
No 9
>1zrt_D Cytochrome C1; cytochrome BC1, membrane protein, heme protein, rieske iron sulfur protein; HET: HEM SMA HEC; 3.50A {Rhodobacter capsulatus}
Probab=15.76 E-value=32 Score=28.16 Aligned_cols=13 Identities=23% Similarity=0.294 Sum_probs=10.5
Q ss_pred cEEEeecCCCCCc
Q 032493 72 EYVVDVWSGNHAF 84 (139)
Q Consensus 72 ~i~vDIcS~cHPF 84 (139)
.+..++|++||..
T Consensus 28 qvy~evCa~CHsl 40 (258)
T 1zrt_D 28 QVYNEVCSACHGM 40 (258)
T ss_dssp HHHHHTTTTTCCC
T ss_pred HHHHHHHhhcCCc
Confidence 3567999999984
No 10
>3eqx_A FIC domain containing transcriptional regulator; FIC family protein, structural genomics, joint center for ST genomics, JCSG; HET: MSE PGE; 1.60A {Shewanella oneidensis}
Probab=15.53 E-value=49 Score=27.59 Aligned_cols=15 Identities=20% Similarity=0.301 Sum_probs=11.1
Q ss_pred CCCcccCceeeeeecchhHHHHH
Q 032493 81 NHAFYLGGRSAVVVDADQVEKFR 103 (139)
Q Consensus 81 cHPFYTGkqk~~vdt~GRVeKFn 103 (139)
-|||+-| .||+.|+-
T Consensus 198 IHPF~DG--------NGR~~Rll 212 (373)
T 3eqx_A 198 IHPFIDG--------NGRTGRVL 212 (373)
T ss_dssp HCCSSSC--------HHHHHHHH
T ss_pred cCCCCCC--------CchHHHHH
Confidence 3999888 47777765
Done!