BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032496
(139 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3D21|A Chain A, Crystal Structure Of A Poplar Wild-Type Thioredoxin H,
Pttrxh4
pdb|3D21|B Chain B, Crystal Structure Of A Poplar Wild-Type Thioredoxin H,
Pttrxh4
Length = 139
Score = 220 bits (561), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 99/139 (71%), Positives = 119/139 (85%)
Query: 1 MGTCLSKRQHDEEDGEHPVEFAGGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGP 60
MG CL+KR HD +D E +E AGGNV L+TTK+ WDQK+SEAS++GKIV+ANFSA WCGP
Sbjct: 1 MGLCLAKRNHDADDDEPHIELAGGNVHLITTKERWDQKLSEASRDGKIVLANFSARWCGP 60
Query: 61 CRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANK 120
C+ IAP++ ELSE YPSLMFL++DVDEL +FS SW+IKATPTFFFL+DGQQVDKLVGANK
Sbjct: 61 CKQIAPYYIELSENYPSLMFLVIDVDELSDFSASWEIKATPTFFFLRDGQQVDKLVGANK 120
Query: 121 PELQKKVAAAVDSVVPSQK 139
PEL KK+ A +DS+ PS K
Sbjct: 121 PELHKKITAILDSLPPSDK 139
>pdb|3D22|A Chain A, Crystal Structure Of A Poplar Thioredoxin H Mutant,
Pttrxh4c61s
Length = 139
Score = 219 bits (557), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 99/139 (71%), Positives = 118/139 (84%)
Query: 1 MGTCLSKRQHDEEDGEHPVEFAGGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGP 60
MG CL+KR HD +D E +E AGGNV L+TTK+ WDQK+SEAS++GKIV+ANFSA WCGP
Sbjct: 1 MGLCLAKRNHDADDDEPHIELAGGNVHLITTKERWDQKLSEASRDGKIVLANFSARWCGP 60
Query: 61 CRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANK 120
R IAP++ ELSE YPSLMFL++DVDEL +FS SW+IKATPTFFFL+DGQQVDKLVGANK
Sbjct: 61 SRQIAPYYIELSENYPSLMFLVIDVDELSDFSASWEIKATPTFFFLRDGQQVDKLVGANK 120
Query: 121 PELQKKVAAAVDSVVPSQK 139
PEL KK+ A +DS+ PS K
Sbjct: 121 PELHKKITAILDSLPPSDK 139
>pdb|1WMJ|A Chain A, Solution Structure Of Thioredoxin Type H From Oryza Sativa
Length = 130
Score = 117 bits (293), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 51/107 (47%), Positives = 76/107 (71%)
Query: 31 TKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVE 90
KD +D +M++A + GK+VI +F+A+WCGPCR IAP F+E ++K+P +FL VDVDEL E
Sbjct: 21 NKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAVFLKVDVDELKE 80
Query: 91 FSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKVAAAVDSVVPS 137
+ ++++A PTF F+KDG + DK+VGA K +LQ + V + S
Sbjct: 81 VAEKYNVEAMPTFLFIKDGAEADKVVGARKDDLQNTIVKHVGATAAS 127
>pdb|1XFL|A Chain A, Solution Structure Of Thioredoxin H1 From Arabidopsis
Thaliana
Length = 124
Score = 115 bits (288), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 49/105 (46%), Positives = 77/105 (73%)
Query: 24 GNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLV 83
G V T + W++++ +A++ +V+ +F+A+WCGPCR IAPFF++L++K P+++FL V
Sbjct: 16 GQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPNVLFLKV 75
Query: 84 DVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKVA 128
D DEL ++ W I+A PTF FLK+G+ +DK+VGA K ELQ +A
Sbjct: 76 DTDELKSVASDWAIQAMPTFMFLKEGKILDKVVGAKKDELQSTIA 120
>pdb|2VM1|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|C Chain C, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|D Chain D, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM2|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|C Chain C, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|D Chain D, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
Length = 118
Score = 113 bits (283), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 49/110 (44%), Positives = 76/110 (69%)
Query: 24 GNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLV 83
G V TK +D M+ GK+VI +F+A+WCGPCR+IAP F+E ++K+P +FL V
Sbjct: 6 GAVIACHTKQEFDTHMANGKDTGKLVIIDFTASWCGPCRVIAPVFAEYAKKFPGAIFLKV 65
Query: 84 DVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKVAAAVDS 133
DVDEL + + +++++A PTF F+KDG++VD +VG K ++ K+ A + S
Sbjct: 66 DVDELKDVAEAYNVEAMPTFLFIKDGEKVDSVVGGRKDDIHTKIVALMGS 115
>pdb|1TI3|A Chain A, Solution Structure Of The Thioredoxin H1 From Poplar, A
Cppc Active Site Variant
Length = 113
Score = 108 bits (269), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 49/105 (46%), Positives = 70/105 (66%)
Query: 24 GNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLV 83
G V T D W + + K+++ +F+A+WC PC+MIAP F+EL++K+P++ FL V
Sbjct: 4 GQVIACHTVDTWKEHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFPNVTFLKV 63
Query: 84 DVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKVA 128
DVDEL + W+++A PTF FLKDG+ VDK VGA+K L VA
Sbjct: 64 DVDELKAVAEEWNVEAMPTFIFLKDGKLVDKTVGADKDGLPTLVA 108
>pdb|2VLT|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In The
Oxidized State
pdb|2VLT|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In The
Oxidized State
pdb|2VLU|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLU|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLV|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLV|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
Length = 122
Score = 101 bits (251), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 43/93 (46%), Positives = 68/93 (73%)
Query: 35 WDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTS 94
W ++ EA+ K+V+ +F+A+WCGPCR++AP F++L++K+P+ +FL VDVDEL +
Sbjct: 23 WTMQIEEANTAKKLVVIDFTASWCGPCRIMAPVFADLAKKFPNAVFLKVDVDELKPIAEQ 82
Query: 95 WDIKATPTFFFLKDGQQVDKLVGANKPELQKKV 127
+ ++A PTF F+K+G D++VGA K EL KV
Sbjct: 83 FSVEAMPTFLFMKEGDVKDRVVGAIKEELTAKV 115
>pdb|1TRS|A Chain A, The High-Resolution Three-Dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
pdb|1TRU|A Chain A, The High-Resolution Three-Dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
pdb|1TRV|A Chain A, The High-resolution Three-dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
pdb|1TRW|A Chain A, The High-Resolution Three-Dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
Length = 105
Score = 99.0 bits (245), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 43/81 (53%), Positives = 61/81 (75%)
Query: 47 KIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFL 106
K+V+ +FSATWCGPC+MI PFF LSEKY +++FL VDVD+ + ++ ++KATPTF F
Sbjct: 21 KLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDAQDVASEAEVKATPTFQFF 80
Query: 107 KDGQQVDKLVGANKPELQKKV 127
K GQ+V + GANK +L+ +
Sbjct: 81 KKGQKVGEFSGANKEKLEATI 101
>pdb|2IWT|A Chain A, Thioredoxin H2 (Hvtrxh2) In A Mixed Disulfide Complex With
The Target Protein Basi
Length = 125
Score = 97.4 bits (241), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 42/93 (45%), Positives = 67/93 (72%)
Query: 35 WDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTS 94
W ++ EA+ K+V+ +F+A+WCGP R++AP F++L++K+P+ +FL VDVDEL +
Sbjct: 26 WTMQIEEANTAKKLVVIDFTASWCGPSRIMAPVFADLAKKFPNAVFLKVDVDELKPIAEQ 85
Query: 95 WDIKATPTFFFLKDGQQVDKLVGANKPELQKKV 127
+ ++A PTF F+K+G D++VGA K EL KV
Sbjct: 86 FSVEAMPTFLFMKEGDVKDRVVGAIKEELTAKV 118
>pdb|3TRX|A Chain A, High-Resolution Three-Dimensional Structure Of Reduced
Recombinant Human Thioredoxin In Solution
pdb|4TRX|A Chain A, High-Resolution Three-Dimensional Structure Of Reduced
Recombinant Human Thioredoxin In Solution
Length = 105
Score = 97.4 bits (241), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 43/85 (50%), Positives = 61/85 (71%)
Query: 47 KIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFL 106
K+V+ +FSATWCGPC+MI PFF LSEKY +++FL VDVD+ + ++ ++K TPTF F
Sbjct: 21 KLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASECEVKCTPTFQFF 80
Query: 107 KDGQQVDKLVGANKPELQKKVAAAV 131
K GQ+V + GANK +L+ + V
Sbjct: 81 KKGQKVGEFSGANKEKLEATINELV 105
>pdb|1MDI|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Mutant Human Thioredoxin And A 13
Residue Peptide Comprising Its Target Site In Human Nfkb
pdb|1MDJ|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (c35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Nfkb (residues 56-68 Of The P50
Subunit Of Nfkb)
pdb|1MDK|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (C35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Nfkb (Residues 56-68 Of The P50
Subunit Of Nfkb)
pdb|1CQH|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (C35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Ref-1 (Residues 59-71 Of The
P50 Subunit Of Nfkb), Nmr, Minimized Average Structure
pdb|1CQG|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (C35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Ref-1 (Residues 59-71 Of The
P50 Subunit Of Nfkb), Nmr, 31 Structures
Length = 105
Score = 95.9 bits (237), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 60/81 (74%)
Query: 47 KIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFL 106
K+V+ +FSATWCGP +MI PFF LSEKY +++FL VDVD+ + ++ ++KATPTF F
Sbjct: 21 KLVVVDFSATWCGPAKMIKPFFHSLSEKYSNVIFLEVDVDDAQDVASEAEVKATPTFQFF 80
Query: 107 KDGQQVDKLVGANKPELQKKV 127
K GQ+V + GANK +L+ +
Sbjct: 81 KKGQKVGEFSGANKEKLEATI 101
>pdb|2HSH|A Chain A, Crystal Structure Of C73s Mutant Of Human Thioredoxin-1
Oxidized With H2o2
pdb|1ERV|A Chain A, Human Thioredoxin Mutant With Cys 73 Replaced By Ser
(Reduced Form)
Length = 105
Score = 95.5 bits (236), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 42/85 (49%), Positives = 61/85 (71%)
Query: 47 KIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFL 106
K+V+ +FSATWCGPC+MI PFF LSEKY +++FL VDVD+ + ++ ++K+ PTF F
Sbjct: 21 KLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASECEVKSMPTFQFF 80
Query: 107 KDGQQVDKLVGANKPELQKKVAAAV 131
K GQ+V + GANK +L+ + V
Sbjct: 81 KKGQKVGEFSGANKEKLEATINELV 105
>pdb|3M9J|A Chain A, Crystal Structure Of Human Thioredoxin C6973S DOUBLE
MUTANT, REDUCED Form
pdb|3M9J|B Chain B, Crystal Structure Of Human Thioredoxin C6973S DOUBLE
MUTANT, REDUCED Form
pdb|3M9K|A Chain A, Crystal Structure Of Human Thioredoxin C6973S
DOUBLE-Mutant, Oxidized Form
pdb|3M9K|B Chain B, Crystal Structure Of Human Thioredoxin C6973S
DOUBLE-Mutant, Oxidized Form
Length = 105
Score = 95.1 bits (235), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 42/85 (49%), Positives = 61/85 (71%)
Query: 47 KIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFL 106
K+V+ +FSATWCGPC+MI PFF LSEKY +++FL VDVD+ + ++ ++K+ PTF F
Sbjct: 21 KLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASESEVKSMPTFQFF 80
Query: 107 KDGQQVDKLVGANKPELQKKVAAAV 131
K GQ+V + GANK +L+ + V
Sbjct: 81 KKGQKVGEFSGANKEKLEATINELV 105
>pdb|2IFQ|B Chain B, Crystal Structure Of S-Nitroso Thioredoxin
pdb|1AUC|A Chain A, Human Thioredoxin (Oxidized With Diamide)
pdb|1ERT|A Chain A, Human Thioredoxin (Reduced Form)
pdb|1ERU|A Chain A, Human Thioredoxin (Oxidized Form)
Length = 105
Score = 95.1 bits (235), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 42/85 (49%), Positives = 60/85 (70%)
Query: 47 KIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFL 106
K+V+ +FSATWCGPC+MI PFF LSEKY +++FL VDVD+ + ++ ++K PTF F
Sbjct: 21 KLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASECEVKCMPTFQFF 80
Query: 107 KDGQQVDKLVGANKPELQKKVAAAV 131
K GQ+V + GANK +L+ + V
Sbjct: 81 KKGQKVGEFSGANKEKLEATINELV 105
>pdb|2IFQ|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2IFQ|C Chain C, Crystal Structure Of S-Nitroso Thioredoxin
Length = 105
Score = 95.1 bits (235), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 42/85 (49%), Positives = 60/85 (70%)
Query: 47 KIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFL 106
K+V+ +FSATWCGPC+MI PFF LSEKY +++FL VDVD+ + ++ ++K PTF F
Sbjct: 21 KLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASEXEVKCMPTFQFF 80
Query: 107 KDGQQVDKLVGANKPELQKKVAAAV 131
K GQ+V + GANK +L+ + V
Sbjct: 81 KKGQKVGEFSGANKEKLEATINELV 105
>pdb|3QFA|C Chain C, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFA|D Chain D, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFB|C Chain C, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFB|D Chain D, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
Length = 116
Score = 94.0 bits (232), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 44/104 (42%), Positives = 69/104 (66%), Gaps = 2/104 (1%)
Query: 24 GNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLV 83
G+V + +K + + + A K+V+ +FSATWCGP +MI PFF LSEKY +++FL V
Sbjct: 11 GSVKQIESKTAFQEALDAAGD--KLVVVDFSATWCGPSKMIKPFFHSLSEKYSNVIFLEV 68
Query: 84 DVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKV 127
DVD+ + ++ ++K+ PTF F K GQ+V + GANK +L+ +
Sbjct: 69 DVDDCQDVASECEVKSMPTFQFFKKGQKVGEFSGANKEKLEATI 112
>pdb|1AIU|A Chain A, Human Thioredoxin (D60n Mutant, Reduced Form)
Length = 105
Score = 93.6 bits (231), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 41/85 (48%), Positives = 60/85 (70%)
Query: 47 KIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFL 106
K+V+ +FSATWCGPC+MI PFF LSEKY +++FL VDV++ + ++ ++K PTF F
Sbjct: 21 KLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVNDCQDVASECEVKCMPTFQFF 80
Query: 107 KDGQQVDKLVGANKPELQKKVAAAV 131
K GQ+V + GANK +L+ + V
Sbjct: 81 KKGQKVGEFSGANKEKLEATINELV 105
>pdb|3KD0|A Chain A, Human Thioredoxin C35s,C62s,C69s,C73s Mutant Showing
Cadmium Chloride Bound To The Active Site
Length = 105
Score = 91.3 bits (225), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 40/81 (49%), Positives = 59/81 (72%)
Query: 47 KIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFL 106
K+V+ +FSATWCGP +MI PFF LSEKY +++FL VDVD+ + ++ ++K+ PTF F
Sbjct: 21 KLVVVDFSATWCGPSKMIKPFFHSLSEKYSNVIFLEVDVDDSQDVASESEVKSMPTFQFF 80
Query: 107 KDGQQVDKLVGANKPELQKKV 127
K GQ+V + GANK +L+ +
Sbjct: 81 KKGQKVGEFSGANKEKLEATI 101
>pdb|3E3E|A Chain A, Human Thioredoxin Double Mutant C35s,C73r
pdb|3E3E|B Chain B, Human Thioredoxin Double Mutant C35s,C73r
Length = 105
Score = 90.9 bits (224), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 41/85 (48%), Positives = 59/85 (69%)
Query: 47 KIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFL 106
K+V+ +FSATWCGP +MI PFF LSEKY +++FL VDVD+ + ++ ++K PTF F
Sbjct: 21 KLVVVDFSATWCGPSKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASECEVKRMPTFQFF 80
Query: 107 KDGQQVDKLVGANKPELQKKVAAAV 131
K GQ+V + GANK +L+ + V
Sbjct: 81 KKGQKVGEFSGANKEKLEATINELV 105
>pdb|2I9H|A Chain A, Nmr Solution Structure Of The Reduced Form Of Thioredoxin
1 From Yeast (Trx1)
Length = 103
Score = 87.4 bits (215), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 58/88 (65%)
Query: 42 ASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATP 101
A + K+V+ +F ATWCGPC+MIAP + SE+YP F +DVDEL + + ++ A P
Sbjct: 14 AIAQDKLVVVDFYATWCGPCKMIAPMIEKFSEQYPQADFYKLDVDELGDVAQKNEVSAMP 73
Query: 102 TFFFLKDGQQVDKLVGANKPELQKKVAA 129
T K+G++V K+VGAN +++ +AA
Sbjct: 74 TLLLFKNGKEVAKVVGANPAAIKQAIAA 101
>pdb|3F3Q|A Chain A, Crystal Structure Of The Oxidised Form Of Thioredoxin 1
From Saccharomyces Cerevisiae
Length = 109
Score = 87.4 bits (215), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 58/88 (65%)
Query: 42 ASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATP 101
A + K+V+ +F ATWCGPC+MIAP + SE+YP F +DVDEL + + ++ A P
Sbjct: 20 AIAQDKLVVVDFYATWCGPCKMIAPMIEKFSEQYPQADFYKLDVDELGDVAQKNEVSAMP 79
Query: 102 TFFFLKDGQQVDKLVGANKPELQKKVAA 129
T K+G++V K+VGAN +++ +AA
Sbjct: 80 TLLLFKNGKEVAKVVGANPAAIKQAIAA 107
>pdb|1ERW|A Chain A, Human Thioredoxin Double Mutant With Cys 32 Replaced By
Ser And Cys 35 Replaced By Ser
Length = 105
Score = 87.0 bits (214), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 40/85 (47%), Positives = 58/85 (68%)
Query: 47 KIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFL 106
K+V+ +FSATW GP +MI PFF LSEKY +++FL VDVD+ + ++ ++K PTF F
Sbjct: 21 KLVVVDFSATWSGPSKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASECEVKCMPTFQFF 80
Query: 107 KDGQQVDKLVGANKPELQKKVAAAV 131
K GQ+V + GANK +L+ + V
Sbjct: 81 KKGQKVGEFSGANKEKLEATINELV 105
>pdb|1EP7|A Chain A, Crystal Structure Of Wt Thioredoxin H From Chlamydomonas
Reinhardtii
pdb|1EP7|B Chain B, Crystal Structure Of Wt Thioredoxin H From Chlamydomonas
Reinhardtii
pdb|1TOF|A Chain A, Thioredoxin H (Oxidized Form), Nmr, 23 Structures
Length = 112
Score = 86.7 bits (213), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 46/107 (42%), Positives = 70/107 (65%), Gaps = 1/107 (0%)
Query: 23 GGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS-LMFL 81
GG+V ++ +K WD ++++ +E K ++ +F+ATWCGPC+MIAP F LS Y ++FL
Sbjct: 1 GGSVIVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFL 60
Query: 82 LVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKVA 128
VDVD + + + I A PTF KDG + D LVGA++ +L+ VA
Sbjct: 61 KVDVDAVAAVAEAAGITAMPTFHVYKDGVKADDLVGASQDKLKALVA 107
>pdb|3ZZX|A Chain A, Crystallographic Structure Of Thioredoxin From Litopenaeus
Vannamei
pdb|3ZZX|B Chain B, Crystallographic Structure Of Thioredoxin From Litopenaeus
Vannamei
Length = 105
Score = 85.9 bits (211), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 42/98 (42%), Positives = 63/98 (64%), Gaps = 2/98 (2%)
Query: 26 VSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDV 85
V V ++ + ++++EA K+V+ +F ATWCGPC+MIAP ELS+ ++FL VDV
Sbjct: 2 VYQVKDQEDFTKQLNEAG--NKLVVIDFYATWCGPCKMIAPKLEELSQSMSDVVFLKVDV 59
Query: 86 DELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPEL 123
DE + + I PTF F+K+GQ++D L GAN +L
Sbjct: 60 DECEDIAQDNQIACMPTFLFMKNGQKLDSLSGANYDKL 97
>pdb|1EP8|A Chain A, Crystal Structure Of A Mutated Thioredoxin, D30a, From
Chlamydomonas Reinhardtii
pdb|1EP8|B Chain B, Crystal Structure Of A Mutated Thioredoxin, D30a, From
Chlamydomonas Reinhardtii
Length = 112
Score = 85.5 bits (210), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 46/107 (42%), Positives = 69/107 (64%), Gaps = 1/107 (0%)
Query: 23 GGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS-LMFL 81
GG+V ++ +K WD ++++ +E K ++ F+ATWCGPC+MIAP F LS Y ++FL
Sbjct: 1 GGSVIVIDSKAAWDAQLAKGKEEHKPIVVAFTATWCGPCKMIAPLFETLSNDYAGKVIFL 60
Query: 82 LVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKVA 128
VDVD + + + I A PTF KDG + D LVGA++ +L+ VA
Sbjct: 61 KVDVDAVAAVAEAAGITAMPTFHVYKDGVKADDLVGASQDKLKALVA 107
>pdb|1SYR|A Chain A, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|B Chain B, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|C Chain C, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|D Chain D, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|E Chain E, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|F Chain F, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|G Chain G, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|H Chain H, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|I Chain I, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|J Chain J, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|K Chain K, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|L Chain L, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
Length = 112
Score = 85.1 bits (209), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 41/102 (40%), Positives = 65/102 (63%), Gaps = 4/102 (3%)
Query: 26 VSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDV 85
V +VT++ +D +S+ ++VI +F A WCGPC+ IAPF+ E S+ Y ++F+ VDV
Sbjct: 10 VKIVTSQAEFDSIISQ----NELVIVDFFAEWCGPCKRIAPFYEECSKTYTKMVFIKVDV 65
Query: 86 DELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKV 127
DE+ E + +I + PTF K+G VD L+GAN L++ +
Sbjct: 66 DEVSEVTEKENITSMPTFKVYKNGSSVDTLLGANDSALKQLI 107
>pdb|2XBI|A Chain A, Crystal Structure Of Schistosoma Mansoni Thioredoxin At
1.6 Angstrom
Length = 108
Score = 84.7 bits (208), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 38/75 (50%), Positives = 56/75 (74%), Gaps = 1/75 (1%)
Query: 45 EGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFF 104
+ K+V+ +F ATWCGPC+ IAP F ELSEKY ++ F+ VDVD+L E + ++I A PTF
Sbjct: 23 KNKLVVVDFFATWCGPCKTIAPLFKELSEKYDAI-FVKVDVDKLEETARKYNISAMPTFI 81
Query: 105 FLKDGQQVDKLVGAN 119
+K+G++V +VGA+
Sbjct: 82 AIKNGEKVGDVVGAS 96
>pdb|1XWA|A Chain A, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|B Chain B, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|C Chain C, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|D Chain D, Drospohila Thioredoxin, Oxidized, P41212
Length = 111
Score = 84.3 bits (207), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/111 (39%), Positives = 70/111 (63%), Gaps = 3/111 (2%)
Query: 22 AGGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP-SLMF 80
A V V K D ++++AS GK+V+ +F ATWCGPC+MI+P ELS ++ +++
Sbjct: 3 AAAMVYQVKDKADLDGQLTKAS--GKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVV 60
Query: 81 LLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKVAAAV 131
L VDVDE + + ++I + PTF FLK+G +V++ GAN L+ + A +
Sbjct: 61 LKVDVDECEDIAMEYNISSMPTFVFLKNGVKVEEFAGANAKRLEDVIKANI 111
>pdb|2HXK|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2HXK|B Chain B, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2HXK|C Chain C, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2IIY|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
Length = 105
Score = 84.3 bits (207), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/81 (50%), Positives = 59/81 (72%)
Query: 47 KIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFL 106
K+V+ +FSATWCGPC+MI PFF LSEKY +++FL VDVD+ + ++ ++K PTF F
Sbjct: 21 KLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDXQDVASEXEVKCMPTFQFF 80
Query: 107 KDGQQVDKLVGANKPELQKKV 127
K GQ+V + GANK +L+ +
Sbjct: 81 KKGQKVGEFSGANKEKLEATI 101
>pdb|2VIM|A Chain A, X-Ray Structure Of Fasciola Hepatica Thioredoxin
Length = 104
Score = 84.0 bits (206), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 65/100 (65%), Gaps = 3/100 (3%)
Query: 28 LVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDE 87
L T D+ +K+ +K G++++ +F A WCGPCR IAP L+++ P + F VDVD+
Sbjct: 4 LATAADL--EKLINENK-GRLIVVDFFAQWCGPCRNIAPKVEALAKEIPEVEFAKVDVDQ 60
Query: 88 LVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKV 127
E + + + A PTF F+KDG++VD+ GAN+ +L++ +
Sbjct: 61 NEEAAAKYSVTAMPTFVFIKDGKEVDRFSGANETKLRETI 100
>pdb|2XBQ|A Chain A, Crystal Structure Of Reduced Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.7 Angstrom
pdb|2XBQ|B Chain B, Crystal Structure Of Reduced Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.7 Angstrom
pdb|2XC2|A Chain A, Crystal Structure Of Oxidized Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.6 Angstrom
Length = 117
Score = 84.0 bits (206), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 38/75 (50%), Positives = 56/75 (74%), Gaps = 1/75 (1%)
Query: 45 EGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFF 104
+ K+V+ +F ATWCGPC+ IAP F ELSEKY ++ F+ VDVD+L E + ++I A PTF
Sbjct: 32 KNKLVVVDFFATWCGPCKTIAPLFKELSEKYDAI-FVKVDVDKLEETARKYNISAMPTFI 90
Query: 105 FLKDGQQVDKLVGAN 119
+K+G++V +VGA+
Sbjct: 91 AIKNGEKVGDVVGAS 105
>pdb|3F3R|A Chain A, Crystal Structure Of Yeast Thioredoxin1-Glutathione Mixed
Disulfide Complex
pdb|3F3R|B Chain B, Crystal Structure Of Yeast Thioredoxin1-Glutathione Mixed
Disulfide Complex
Length = 109
Score = 83.6 bits (205), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 57/88 (64%)
Query: 42 ASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATP 101
A + K+V+ +F ATWCGP +MIAP + SE+YP F +DVDEL + + ++ A P
Sbjct: 20 AIAQDKLVVVDFYATWCGPSKMIAPMIEKFSEQYPQADFYKLDVDELGDVAQKNEVSAMP 79
Query: 102 TFFFLKDGQQVDKLVGANKPELQKKVAA 129
T K+G++V K+VGAN +++ +AA
Sbjct: 80 TLLLFKNGKEVAKVVGANPAAIKQAIAA 107
>pdb|1XW9|A Chain A, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|B Chain B, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|C Chain C, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|D Chain D, Drospohila Thioredoxin, Oxidized, P21
pdb|1XWB|A Chain A, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|B Chain B, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|C Chain C, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|D Chain D, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWC|A Chain A, Drosophila Thioredoxin, Reduced, P6522
Length = 106
Score = 83.6 bits (205), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 40/97 (41%), Positives = 66/97 (68%), Gaps = 3/97 (3%)
Query: 36 DQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP-SLMFLLVDVDELVEFSTS 94
D ++++AS GK+V+ +F ATWCGPC+MI+P ELS ++ +++ L VDVDE + +
Sbjct: 12 DGQLTKAS--GKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDECEDIAME 69
Query: 95 WDIKATPTFFFLKDGQQVDKLVGANKPELQKKVAAAV 131
++I + PTF FLK+G +V++ GAN L+ + A +
Sbjct: 70 YNISSMPTFVFLKNGVKVEEFAGANAKRLEDVIKANI 106
>pdb|1M7T|A Chain A, Solution Structure And Dynamics Of The Human-Escherichia
Coli Thioredoxin Chimera: Insights Into Thermodynamic
Stability
Length = 107
Score = 82.4 bits (202), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 49/72 (68%)
Query: 47 KIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFL 106
K+V+ +FSATWCGPC+MI PFF LSEKY +++FL VDVD+ + + + I+ PT
Sbjct: 21 KLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDAQDVAPKYGIRGIPTLLLF 80
Query: 107 KDGQQVDKLVGA 118
K+G+ VGA
Sbjct: 81 KNGEVAATKVGA 92
>pdb|2HSY|A Chain A, Solution Structure Of Thioredoxin 2 From Saccharomyces
Cerevisiae
Length = 104
Score = 81.6 bits (200), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 56/85 (65%)
Query: 47 KIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFL 106
K+V+ +F ATWCGPC+MIAP + +E+Y F +DVDE+ + + ++ + PT F
Sbjct: 20 KLVVVDFFATWCGPCKMIAPMIEKFAEQYSDAAFYKLDVDEVSDVAQKAEVSSMPTLIFY 79
Query: 107 KDGQQVDKLVGANKPELQKKVAAAV 131
K G++V ++VGAN +++ +A+ V
Sbjct: 80 KGGKEVTRVVGANPAAIKQAIASNV 104
>pdb|2FA4|A Chain A, Crystal Structure Of Oxidized Form From Saccharomyces
Cerevisiae
pdb|2FA4|B Chain B, Crystal Structure Of Oxidized Form From Saccharomyces
Cerevisiae
Length = 111
Score = 81.6 bits (200), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 56/85 (65%)
Query: 47 KIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFL 106
K+V+ +F ATWCGPC+MIAP + +E+Y F +DVDE+ + + ++ + PT F
Sbjct: 27 KLVVVDFFATWCGPCKMIAPMIEKFAEQYSDAAFYKLDVDEVSDVAQKAEVSSMPTLIFY 86
Query: 107 KDGQQVDKLVGANKPELQKKVAAAV 131
K G++V ++VGAN +++ +A+ V
Sbjct: 87 KGGKEVTRVVGANPAAIKQAIASNV 111
>pdb|2J23|A Chain A, Cross-Reactivity And Crystal Structure Of Malassezia
Sympodialis Thioredoxin (Mala S 13), A Member Of A New
Pan- Allergen Family
pdb|2J23|B Chain B, Cross-Reactivity And Crystal Structure Of Malassezia
Sympodialis Thioredoxin (Mala S 13), A Member Of A New
Pan- Allergen Family
Length = 121
Score = 80.5 bits (197), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 65/106 (61%), Gaps = 6/106 (5%)
Query: 24 GNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS--LMFL 81
G+V ++++ D + + + K+V+ +F ATWCGPC+MI P F ++S+ + F
Sbjct: 15 GSVQVISSYD----QFKQVTGGDKVVVIDFWATWCGPCKMIGPVFEKISDTPAGDKVGFY 70
Query: 82 LVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKV 127
VDVDE + + I+A PTF F K+GQ++D +VGA+ +LQ +
Sbjct: 71 KVDVDEQSQIAQEVGIRAMPTFVFFKNGQKIDTVVGADPSKLQAAI 116
>pdb|2OE0|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae
pdb|2OE0|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae
pdb|2OE1|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Reduced Form)
pdb|2OE1|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Reduced Form)
pdb|2OE3|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Oxidized Form)
pdb|2OE3|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Oxidized Form)
Length = 114
Score = 79.0 bits (193), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 53/84 (63%)
Query: 44 KEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTF 103
K+ ++ +F ATWCGPC+M+ P ++L + YP + F+ DVDE + + ++ A PTF
Sbjct: 28 KQNDKLVIDFYATWCGPCKMMQPHLTKLIQAYPDVRFVKCDVDESPDIAKECEVTAMPTF 87
Query: 104 FFLKDGQQVDKLVGANKPELQKKV 127
KDGQ + K++GAN L+K +
Sbjct: 88 VLGKDGQLIGKIIGANPTALEKGI 111
>pdb|4DSS|B Chain B, Crystal Structure Of Peroxiredoxin Ahp1 From Saccharomyces
Cerevisiae In Complex With Thioredoxin Trx2
Length = 112
Score = 77.8 bits (190), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 55/85 (64%)
Query: 47 KIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFL 106
K+V+ +F ATWCGP +MIAP + +E+Y F +DVDE+ + + ++ + PT F
Sbjct: 28 KLVVVDFFATWCGPSKMIAPMIEKFAEQYSDAAFYKLDVDEVSDVAQKAEVSSMPTLIFY 87
Query: 107 KDGQQVDKLVGANKPELQKKVAAAV 131
K G++V ++VGAN +++ +A+ V
Sbjct: 88 KGGKEVTRVVGANPAAIKQAIASNV 112
>pdb|3PIN|A Chain A, Crystal Structure Of Mxr1 From Saccharomyces Cerevisiae In
Complex With Trx2
Length = 104
Score = 77.8 bits (190), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 55/85 (64%)
Query: 47 KIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFL 106
K+V+ +F ATWCGP +MIAP + +E+Y F +DVDE+ + + ++ + PT F
Sbjct: 20 KLVVVDFFATWCGPSKMIAPMIEKFAEQYSDAAFYKLDVDEVSDVAQKAEVSSMPTLIFY 79
Query: 107 KDGQQVDKLVGANKPELQKKVAAAV 131
K G++V ++VGAN +++ +A+ V
Sbjct: 80 KGGKEVTRVVGANPAAIKQAIASNV 104
>pdb|1GH2|A Chain A, Crystal Structure Of The Catalytic Domain Of A New Human
Thioredoxin-Like Protein
Length = 107
Score = 70.1 bits (170), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 50/81 (61%)
Query: 47 KIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFL 106
++ + F+ CGPC IAP FS +S KYP +FL VDV + + + +I ATPTF F
Sbjct: 22 RLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQCQGTAATNNISATPTFQFF 81
Query: 107 KDGQQVDKLVGANKPELQKKV 127
++ ++D+ GA+ L++K+
Sbjct: 82 RNKVRIDQYQGADAVGLEEKI 102
>pdb|2CVK|A Chain A, Crystal Structure Of Thermus Thermophilus Thioredoxin
Length = 110
Score = 68.6 bits (166), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 1/88 (1%)
Query: 33 DIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVDELVEF 91
++ DQ E + +V+ +F A WC PCR IAP E++++Y L+ +DVDE +
Sbjct: 6 EVTDQNFDETLGQHPLVLVDFWAEWCAPCRXIAPILEEIAKEYEGKLLVAKLDVDENPKT 65
Query: 92 STSWDIKATPTFFFLKDGQQVDKLVGAN 119
+ + + + PT KDGQ V+ LVGA
Sbjct: 66 AXRYRVXSIPTVILFKDGQPVEVLVGAQ 93
>pdb|2YZU|A Chain A, Crystal Structure Of Oxidized Thioredoxin From Thermus
Thermophilus Hb8
Length = 109
Score = 68.6 bits (166), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 1/88 (1%)
Query: 33 DIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVDELVEF 91
++ DQ E + +V+ +F A WC PCR IAP E++++Y L+ +DVDE +
Sbjct: 5 EVTDQNFDETLGQHPLVLVDFWAEWCAPCRXIAPILEEIAKEYEGKLLVAKLDVDENPKT 64
Query: 92 STSWDIKATPTFFFLKDGQQVDKLVGAN 119
+ + + + PT KDGQ V+ LVGA
Sbjct: 65 AXRYRVXSIPTVILFKDGQPVEVLVGAQ 92
>pdb|2O7K|A Chain A, S. Aureus Thioredoxin
Length = 107
Score = 68.2 bits (165), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 56/97 (57%), Gaps = 7/97 (7%)
Query: 23 GGNVSLVTTKDI-WDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFL 81
G ++++V D +D K+ E + + +F ATWCGPC+MIAP EL+ Y +
Sbjct: 1 GSHMAIVKVTDADFDSKV-----ESGVQLVDFWATWCGPCKMIAPVLEELAADYEGKADI 55
Query: 82 L-VDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVG 117
L +DVDE + +++ + PT KDGQ VDK+VG
Sbjct: 56 LKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVG 92
>pdb|2GZY|A Chain A, Solution Structures Of The Reduced Form Of Thioredoxin
From Bacillus Subtilis
pdb|2GZZ|A Chain A, Solution Structures Of The Oxidized Form Of Thioredoxin
From Bacillus Subtilis
Length = 104
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 50/83 (60%), Gaps = 2/83 (2%)
Query: 36 DQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKY-PSLMFLLVDVDELVEFSTS 94
DQ S + EG +V+A+F A WCGPC+MIAP EL ++ L + +DVDE E +
Sbjct: 8 DQSFSAETSEG-VVLADFWAPWCGPCKMIAPVLEELDQEMGDKLKIVKIDVDENQETAGK 66
Query: 95 WDIKATPTFFFLKDGQQVDKLVG 117
+ + + PT LKDG+ V+ VG
Sbjct: 67 YGVMSIPTLLVLKDGEVVETSVG 89
>pdb|2YJ7|A Chain A, Crystal Structure Of A Hyperstable Protein From The
Precambrian Period
pdb|2YJ7|B Chain B, Crystal Structure Of A Hyperstable Protein From The
Precambrian Period
Length = 106
Score = 67.8 bits (164), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 52/88 (59%), Gaps = 1/88 (1%)
Query: 40 SEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVDELVEFSTSWDIK 98
E K K V+ +F A WCGPCRMIAP EL+++Y + + V+VDE + + I+
Sbjct: 13 QEVLKSDKPVLVDFWAPWCGPCRMIAPIIEELAKEYEGKVKVVKVNVDENPNTAAQYGIR 72
Query: 99 ATPTFFFLKDGQQVDKLVGANKPELQKK 126
+ PT K+GQ VD+LVGA E K+
Sbjct: 73 SIPTLLLFKNGQVVDRLVGAQPKEALKE 100
>pdb|3HHV|A Chain A, The Crystal Structure Of The Thioredoxin A2 From
Sulfolobus Solfataricus
Length = 110
Score = 67.0 bits (162), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 50/88 (56%)
Query: 31 TKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVE 90
K + + E + KIV+ +F A WC PC ++AP EL+ YP + F ++ +E +
Sbjct: 8 VKHLNSKNFDEFITKNKIVVVDFWAEWCAPCLILAPVIEELANDYPQVAFGKLNTEESQD 67
Query: 91 FSTSWDIKATPTFFFLKDGQQVDKLVGA 118
+ + I + PT F K+G+ VD+++GA
Sbjct: 68 IAMRYGIMSLPTIMFFKNGELVDQILGA 95
>pdb|2E0Q|A Chain A, Crystal Structure Of K53e Thioredoxin From Sulfolobus
Tokodaii Strain7
Length = 104
Score = 66.2 bits (160), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 45/72 (62%)
Query: 47 KIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFL 106
+I + +F A WC PC ++AP EL+E YP + F ++ DE + + + + + PT F
Sbjct: 17 EIAVVDFWAEWCAPCLILAPIIEELAEDYPQVGFGKLNSDENPDIAARYGVMSLPTVIFF 76
Query: 107 KDGQQVDKLVGA 118
KDG+ VD+++GA
Sbjct: 77 KDGEPVDEIIGA 88
>pdb|2WZ9|A Chain A, Crystal Structure Of The Thioredoxin Domain Of Human Txnl2
Length = 153
Score = 65.9 bits (159), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 58/98 (59%), Gaps = 2/98 (2%)
Query: 44 KEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTF 103
K +++ +F A W C + +EL+++ P + F+ ++ + + E S ++I + PTF
Sbjct: 30 KAKSLLVVHFWAPWAPQCAQMNEVMAELAKELPQVSFVKLEAEGVPEVSEKYEISSVPTF 89
Query: 104 FFLKDGQQVDKLVGANKPELQKKVA--AAVDSVVPSQK 139
F K+ Q++D+L GA+ PEL KKV A+ S +PS K
Sbjct: 90 LFFKNSQKIDRLDGAHAPELTKKVQRHASSGSFLPSAK 127
>pdb|2L4Q|A Chain A, Solution Structures Of Oxidized And Reduced Thioredoxin C
From M. Tb
pdb|2L59|A Chain A, Solution Structures Of Oxidized And Reduced Thioredoxin C
From M. Tb
Length = 116
Score = 65.1 bits (157), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 46 GKIVIANFSATWCGPCRMIAPFFSEL-SEKYPSLMFLLVDVDELVEFSTSWDIKATPTFF 104
K V+ +F ATWCGPC+M+AP E+ +E+ L +DVD E + ++ + + PT
Sbjct: 25 NKPVLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDVDTNPETARNFQVVSIPTLI 84
Query: 105 FLKDGQQVDKLVGA 118
KDGQ V ++VGA
Sbjct: 85 LFKDGQPVKRIVGA 98
>pdb|2I1U|A Chain A, Mycobacterium Tuberculosis Thioredoxin C
Length = 121
Score = 65.1 bits (157), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 46 GKIVIANFSATWCGPCRMIAPFFSEL-SEKYPSLMFLLVDVDELVEFSTSWDIKATPTFF 104
K V+ +F ATWCGPC+M+AP E+ +E+ L +DVD E + ++ + + PT
Sbjct: 30 NKPVLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDVDTNPETARNFQVVSIPTLI 89
Query: 105 FLKDGQQVDKLVGA 118
KDGQ V ++VGA
Sbjct: 90 LFKDGQPVKRIVGA 103
>pdb|2O85|A Chain A, S. Aureus Thioredoxin P31t Mutant
Length = 107
Score = 64.7 bits (156), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 55/97 (56%), Gaps = 7/97 (7%)
Query: 23 GGNVSLVTTKDI-WDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFL 81
G ++++V D +D K+ E + + +F ATWCG C+MIAP EL+ Y +
Sbjct: 1 GSHMAIVKVTDADFDSKV-----ESGVQLVDFWATWCGTCKMIAPVLEELAADYEGKADI 55
Query: 82 L-VDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVG 117
L +DVDE + +++ + PT KDGQ VDK+VG
Sbjct: 56 LKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVG 92
>pdb|2O87|A Chain A, S. Aureus Thioredoxin P31s Mutant
Length = 106
Score = 64.7 bits (156), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 45 EGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLL-VDVDELVEFSTSWDIKATPTF 103
E + + +F ATWCG C+MIAP EL+ Y +L +DVDE + +++ + PT
Sbjct: 18 ESGVQLVDFWATWCGSCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTL 77
Query: 104 FFLKDGQQVDKLVG 117
KDGQ VDK+VG
Sbjct: 78 IVFKDGQPVDKVVG 91
>pdb|2IPA|A Chain A, Solution Structure Of Trx-Arsc Complex
Length = 104
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 49/83 (59%), Gaps = 2/83 (2%)
Query: 36 DQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKY-PSLMFLLVDVDELVEFSTS 94
DQ S + EG +V+A+F A WCGP +MIAP EL ++ L + +DVDE E +
Sbjct: 8 DQSFSAETSEG-VVLADFWAPWCGPSKMIAPVLEELDQEMGDKLKIVKIDVDENQETAGK 66
Query: 95 WDIKATPTFFFLKDGQQVDKLVG 117
+ + + PT LKDG+ V+ VG
Sbjct: 67 YGVMSIPTLLVLKDGEVVETSVG 89
>pdb|2VOC|A Chain A, Thioredoxin A Active Site Mutants Form Mixed Disulfide
Dimers That Resemble Enzyme-substrate Reaction
Intermediate
pdb|2VOC|B Chain B, Thioredoxin A Active Site Mutants Form Mixed Disulfide
Dimers That Resemble Enzyme-substrate Reaction
Intermediate
Length = 112
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 49/83 (59%), Gaps = 2/83 (2%)
Query: 36 DQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKY-PSLMFLLVDVDELVEFSTS 94
DQ S + EG +V+A+F A WCGP +MIAP EL ++ L + +DVDE E +
Sbjct: 8 DQSFSAETSEG-VVLADFWAPWCGPSKMIAPVLEELDQEMGDKLKIVKIDVDENQETAGK 66
Query: 95 WDIKATPTFFFLKDGQQVDKLVG 117
+ + + PT LKDG+ V+ VG
Sbjct: 67 YGVMSIPTLLVLKDGEVVETSVG 89
>pdb|2DIY|A Chain A, The Solution Structure Of The Thioredoxin Domain Of Human
Thioredoxin-Like Protein 2
Length = 130
Score = 63.9 bits (154), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 51/84 (60%)
Query: 44 KEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTF 103
K +++ +F A W C + +EL+++ P + F+ ++ + + E S ++I + PTF
Sbjct: 36 KAKSLLVVHFWAPWAPQCAQMNEVMAELAKELPQVSFVKLEAEGVPEVSEKYEISSVPTF 95
Query: 104 FFLKDGQQVDKLVGANKPELQKKV 127
F K+ Q++D+L GA+ PEL KKV
Sbjct: 96 LFFKNSQKIDRLDGAHAPELTKKV 119
>pdb|3DIE|A Chain A, Domain Swapping Of Staphylococcus Aureus Thioredoxin W28a
Mutant
pdb|3DIE|B Chain B, Domain Swapping Of Staphylococcus Aureus Thioredoxin W28a
Mutant
Length = 106
Score = 63.2 bits (152), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 45 EGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLL-VDVDELVEFSTSWDIKATPTF 103
E + + +F AT CGPC+MIAP EL+ Y +L +DVDE + +++ + PT
Sbjct: 18 ESGVQLVDFWATACGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTL 77
Query: 104 FFLKDGQQVDKLVG 117
KDGQ VDK+VG
Sbjct: 78 IVFKDGQPVDKVVG 91
>pdb|1FB0|A Chain A, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Reduced Form)
pdb|1FB0|B Chain B, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Reduced Form)
pdb|1FB6|A Chain A, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Oxidized Form)
pdb|1FB6|B Chain B, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Oxidized Form)
Length = 105
Score = 62.4 bits (150), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 54/90 (60%), Gaps = 2/90 (2%)
Query: 31 TKDIWDQKMSEASKEGKI-VIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVDEL 88
+D+ D E E ++ V+ +F A WCGPC++IAP EL+++Y + ++ DE
Sbjct: 2 VQDVNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEA 61
Query: 89 VEFSTSWDIKATPTFFFLKDGQQVDKLVGA 118
+T ++I++ PT F K+G++ + ++GA
Sbjct: 62 PGIATQYNIRSIPTVLFFKNGERKESIIGA 91
>pdb|1GL8|A Chain A, Solution Structure Of Thioredoxin M From Spinach, Oxidized
Form
Length = 104
Score = 62.4 bits (150), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 54/89 (60%), Gaps = 2/89 (2%)
Query: 32 KDIWDQKMSEASKEGKI-VIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVDELV 89
+D+ D E E ++ V+ +F A WCGPC++IAP EL+++Y + ++ DE
Sbjct: 2 QDVNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAP 61
Query: 90 EFSTSWDIKATPTFFFLKDGQQVDKLVGA 118
+T ++I++ PT F K+G++ + ++GA
Sbjct: 62 GIATQYNIRSIPTVLFFKNGERKESIIGA 90
>pdb|2I4A|A Chain A, Crystal Structure Of Thioredoxin From The Acidophile
Acetobacter Aceti
Length = 107
Score = 62.0 bits (149), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 56/93 (60%), Gaps = 4/93 (4%)
Query: 27 SLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLL-VDV 85
+L + +DQ + +AS +V+ +F A WCGPC+MI P E+ +++ + + V++
Sbjct: 4 TLAVSDSSFDQDVLKASG---LVLVDFWAEWCGPCKMIGPALGEIGKEFAGKVTVAKVNI 60
Query: 86 DELVEFSTSWDIKATPTFFFLKDGQQVDKLVGA 118
D+ E ++ +++ PT ++DG+ +DK VGA
Sbjct: 61 DDNPETPNAYQVRSIPTLMLVRDGKVIDKKVGA 93
>pdb|1NW2|A Chain A, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|B Chain B, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|C Chain C, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|D Chain D, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|E Chain E, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|F Chain F, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|G Chain G, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|H Chain H, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
Length = 105
Score = 61.6 bits (148), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 55/100 (55%), Gaps = 2/100 (2%)
Query: 31 TKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP-SLMFLLVDVDELV 89
T + D +A + K V+ +F A WCGPCRM+AP E +E + + ++VDE
Sbjct: 2 TMTLTDANFQQAIQGDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENP 61
Query: 90 EFSTSWDIKATPTFFFLKDGQQVDKLVGAN-KPELQKKVA 128
E ++ + I + PT K G+ V +L+G K +L+ ++A
Sbjct: 62 ETTSQFGIMSIPTLILFKGGEPVKQLIGYQPKEQLEAQLA 101
>pdb|1QUW|A Chain A, Solution Structure Of The Thioredoxin From Bacillus
Acidocaldarius
Length = 105
Score = 61.6 bits (148), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 55/100 (55%), Gaps = 2/100 (2%)
Query: 31 TKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP-SLMFLLVDVDELV 89
T + D +A + K V+ +F A WCGPCRM+AP E +E + + ++VDE
Sbjct: 2 TMTLTDANFQQAIQGDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENP 61
Query: 90 EFSTSWDIKATPTFFFLKDGQQVDKLVGAN-KPELQKKVA 128
E ++ + I + PT K G+ V +L+G K +L+ ++A
Sbjct: 62 ETTSQFGIMSIPTLILFKGGRPVKQLIGYQPKEQLEAQLA 101
>pdb|3NOF|A Chain A, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant
pdb|3NOF|B Chain B, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant
pdb|3O6T|A Chain A, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
pdb|3O6T|B Chain B, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
pdb|3O6T|C Chain C, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
pdb|3O6T|D Chain D, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
Length = 118
Score = 61.2 bits (147), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 46 GKIVIANFSATWCGPCRMIAPFFSEL-SEKYPSLMFLLVDVDELVEFSTSWDIKATPTFF 104
K V+ +F ATWCGP +M+AP E+ +E+ L +DVD E + ++ + + PT
Sbjct: 27 NKPVLVDFWATWCGPSKMVAPVLEEIATERATDLTVAKLDVDTNPETARNFQVVSIPTLI 86
Query: 105 FLKDGQQVDKLVGA 118
KDGQ V ++VGA
Sbjct: 87 LFKDGQPVKRIVGA 100
>pdb|2O89|A Chain A, S. Aureus Thioredoxin P31tC32S MUTANT
Length = 107
Score = 61.2 bits (147), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 54/97 (55%), Gaps = 7/97 (7%)
Query: 23 GGNVSLVTTKDI-WDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFL 81
G ++++V D +D K+ E + + +F ATWCG +MIAP EL+ Y +
Sbjct: 1 GSHMAIVKVTDADFDSKV-----ESGVQLVDFWATWCGTSKMIAPVLEELAADYEGKADI 55
Query: 82 L-VDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVG 117
L +DVDE + +++ + PT KDGQ VDK+VG
Sbjct: 56 LKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVG 92
>pdb|1UVZ|A Chain A, Structure Of Human Thioredoxin 2
pdb|1UVZ|B Chain B, Structure Of Human Thioredoxin 2
pdb|1UVZ|C Chain C, Structure Of Human Thioredoxin 2
pdb|1UVZ|D Chain D, Structure Of Human Thioredoxin 2
pdb|1UVZ|E Chain E, Structure Of Human Thioredoxin 2
pdb|1UVZ|F Chain F, Structure Of Human Thioredoxin 2
pdb|1W4V|A Chain A, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|B Chain B, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|C Chain C, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|D Chain D, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|E Chain E, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|F Chain F, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W89|A Chain A, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|B Chain B, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|C Chain C, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|D Chain D, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|E Chain E, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|F Chain F, Structure Of The Reduced Form Of Human Thioredoxin 2
Length = 119
Score = 59.7 bits (143), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 44/70 (62%), Gaps = 1/70 (1%)
Query: 49 VIANFSATWCGPCRMIAPFFSEL-SEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLK 107
V+ +F A WCGPC+++ P ++ ++++ ++ VD+D+ + + +++ A PT +K
Sbjct: 34 VVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTVLAMK 93
Query: 108 DGQQVDKLVG 117
+G VDK VG
Sbjct: 94 NGDVVDKFVG 103
>pdb|1RQM|A Chain A, Solution Structure Of The K18gR82E ALICYCLOBACILLUS
Acidocaldarius Thioredoxin Mutant
Length = 105
Score = 59.7 bits (143), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 55/100 (55%), Gaps = 2/100 (2%)
Query: 31 TKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLL-VDVDELV 89
T + D +A + V+ +F A WCGPCRM+AP E +E + + + ++VDE
Sbjct: 2 TMTLTDANFQQAIQGDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENP 61
Query: 90 EFSTSWDIKATPTFFFLKDGQQVDKLVGAN-KPELQKKVA 128
E ++ + I + PT K G+ V +L+G K +L+ ++A
Sbjct: 62 ETTSQFGIMSIPTLILFKGGEPVKQLIGYQPKEQLEAQLA 101
>pdb|1NSW|A Chain A, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|B Chain B, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|C Chain C, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|D Chain D, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
Length = 105
Score = 59.7 bits (143), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 54/100 (54%), Gaps = 2/100 (2%)
Query: 31 TKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP-SLMFLLVDVDELV 89
T + D +A + V+ +F A WCGPCRM+AP E +E + + ++VDE
Sbjct: 2 TMTLTDANFQQAIQGDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENP 61
Query: 90 EFSTSWDIKATPTFFFLKDGQQVDKLVGAN-KPELQKKVA 128
E ++ + I + PT K G+ V +L+G K +L+ ++A
Sbjct: 62 ETTSQFGIMSIPTLILFKGGRPVKQLIGYQPKEQLEAQLA 101
>pdb|3TCO|A Chain A, Crystallographic And Spectroscopic Characterization Of
Sulfolobus Solfataricus Trxa1 Provide Insights Into The
Determinants Of Thioredoxin Fold Stability
pdb|3TCO|B Chain B, Crystallographic And Spectroscopic Characterization Of
Sulfolobus Solfataricus Trxa1 Provide Insights Into The
Determinants Of Thioredoxin Fold Stability
pdb|3TCO|C Chain C, Crystallographic And Spectroscopic Characterization Of
Sulfolobus Solfataricus Trxa1 Provide Insights Into The
Determinants Of Thioredoxin Fold Stability
Length = 109
Score = 58.5 bits (140), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 53/95 (55%), Gaps = 5/95 (5%)
Query: 25 NVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLV 83
+V+LV T++ +D E + K+V+ + A WC PC + P + +++EKY +F +
Sbjct: 4 DVTLVLTEENFD----EVIRNNKLVLVDCWAEWCAPCHLYEPIYKKVAEKYKGKAVFGRL 59
Query: 84 DVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGA 118
+VDE + + + + PT +GQ VD LVGA
Sbjct: 60 NVDENQKIADKYSVLNIPTTLIFVNGQLVDSLVGA 94
>pdb|2PUK|C Chain C, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin M
pdb|2PUK|G Chain G, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin M
Length = 106
Score = 58.5 bits (140), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 53/89 (59%), Gaps = 2/89 (2%)
Query: 32 KDIWDQKMSEASKEGKI-VIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVDELV 89
+D+ D E E ++ V+ +F A WCGP ++IAP EL+++Y + ++ DE
Sbjct: 3 QDVNDSSWKEFVLESEVPVMVDFWAPWCGPSKLIAPVIDELAKEYSGKIAVYKLNTDEAP 62
Query: 90 EFSTSWDIKATPTFFFLKDGQQVDKLVGA 118
+T ++I++ PT F K+G++ + ++GA
Sbjct: 63 GIATQYNIRSIPTVLFFKNGERKESIIGA 91
>pdb|1FAA|A Chain A, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Long Form)
Length = 124
Score = 57.4 bits (137), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 62/117 (52%), Gaps = 4/117 (3%)
Query: 15 GEHPVEFAGGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEK 74
G +E G V+ V W + +A+ + +V+ F+ WCGPC+ +AP + +L+E+
Sbjct: 9 GTQEMEAIVGKVTEVNKDTFWP--IVKAAGDKPVVLDMFT-QWCGPCKAMAPKYEKLAEE 65
Query: 75 YPSLMFLLVDVD-ELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKVAAA 130
Y ++FL +D + E + I+ PTF LK+ V ++ GA +L + + AA
Sbjct: 66 YLDVIFLKLDCNQENKTLAKELGIRVVPTFKILKENSVVGEVTGAKYDKLLEAIQAA 122
>pdb|3HYP|A Chain A, Crystal Structure Of Bacteroides Fragilis Trxp_s105g
Mutant
pdb|3HYP|B Chain B, Crystal Structure Of Bacteroides Fragilis Trxp_s105g
Mutant
Length = 141
Score = 57.4 bits (137), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Query: 47 KIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLL-VDVDELVEFSTSWDIKATPTFFF 105
K I +F A WCGPC+M+AP ELS++Y +++ V+VD+ E + + I+ PT +F
Sbjct: 52 KPAIVDFYADWCGPCKMVAPILEELSKEYAGKIYIYKVNVDKEPELARDFGIQGIPTIWF 111
Query: 106 L 106
+
Sbjct: 112 V 112
>pdb|3HXS|A Chain A, Crystal Structure Of Bacteroides Fragilis Trxp
pdb|3HXS|B Chain B, Crystal Structure Of Bacteroides Fragilis Trxp
Length = 141
Score = 57.4 bits (137), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 40/61 (65%), Gaps = 1/61 (1%)
Query: 47 KIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLL-VDVDELVEFSTSWDIKATPTFFF 105
K I +F A WCGPC+M+AP ELS++Y +++ V+VD+ E + + I++ PT +F
Sbjct: 52 KPAIVDFYADWCGPCKMVAPILEELSKEYAGKIYIYKVNVDKEPELARDFGIQSIPTIWF 111
Query: 106 L 106
+
Sbjct: 112 V 112
>pdb|1R26|A Chain A, Crystal Structure Of Thioredoxin From Trypanosoma Brucei
Brucei
Length = 125
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 46/83 (55%)
Query: 45 EGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFF 104
E + +A F+A WCGPC+ I +++ ++P++ F VD D E + + PTF
Sbjct: 36 EDILTVAWFTAVWCGPCKTIERPMEKIAYEFPTVKFAKVDADNNSEIVSKCRVLQLPTFI 95
Query: 105 FLKDGQQVDKLVGANKPELQKKV 127
+ G+ + ++GAN L++K+
Sbjct: 96 IARSGKMLGHVIGANPGMLRQKL 118
>pdb|1DBY|A Chain A, Nmr Structures Of Chloroplast Thioredoxin M Ch2 From The
Green Alga Chlamydomonas Reinhardtii
Length = 107
Score = 56.6 bits (135), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 49 VIANFSATWCGPCRMIAPFFSELSEKYP-SLMFLLVDVDELVEFSTSWDIKATPTFFFLK 107
V+ +F A WCGPCR+IAP E++ +Y L + ++ DE ++ + I++ PT K
Sbjct: 22 VLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDESPNVASEYGIRSIPTIMVFK 81
Query: 108 DGQQVDKLVGA 118
G++ + ++GA
Sbjct: 82 GGKKCETIIGA 92
>pdb|3DYR|A Chain A, Crystal Structure Of E. Coli Thioredoxin Mutant I76t In
Its Oxidized Form
pdb|3DYR|B Chain B, Crystal Structure Of E. Coli Thioredoxin Mutant I76t In
Its Oxidized Form
Length = 111
Score = 56.2 bits (134), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 51/89 (57%), Gaps = 4/89 (4%)
Query: 31 TKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVDELV 89
T D +D + +A +G I++ +F A WCGPC+MIAP E++++Y L +++D+
Sbjct: 9 TDDSFDTDVLKA--DGAILV-DFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNP 65
Query: 90 EFSTSWDIKATPTFFFLKDGQQVDKLVGA 118
+ + I+ TPT K+G+ VGA
Sbjct: 66 GTAPKYGIRGTPTLLLFKNGEVAATKVGA 94
>pdb|1F9M|A Chain A, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Short Form)
pdb|1F9M|B Chain B, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Short Form)
Length = 112
Score = 55.8 bits (133), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 59/108 (54%), Gaps = 4/108 (3%)
Query: 24 GNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLV 83
G V+ V W + +A+ + +V+ F+ WCGPC+ +AP + +L+E+Y ++FL +
Sbjct: 6 GKVTEVNKDTFWP--IVKAAGDKPVVLDMFT-QWCGPCKAMAPKYEKLAEEYLDVIFLKL 62
Query: 84 DVD-ELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKVAAA 130
D + E + I+ PTF LK+ V ++ GA +L + + AA
Sbjct: 63 DCNQENKTLAKELGIRVVPTFKILKENSVVGEVTGAKYDKLLEAIQAA 110
>pdb|1V98|A Chain A, Crystal Structure Analysis Of Thioredoxin From Thermus
Thermophilus
pdb|1V98|B Chain B, Crystal Structure Analysis Of Thioredoxin From Thermus
Thermophilus
Length = 140
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 48 IVIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVDELVEFSTSWDIKATPTFFFL 106
+ + +F A WCGPCR+++P EL+ + L + V+VDE + + +++ PT
Sbjct: 52 LTLVDFFAPWCGPCRLVSPILEELARDHAGRLKVVKVNVDEHPGLAARYGVRSVPTLVLF 111
Query: 107 KDGQQVDKLVGAN 119
+ G V VGA+
Sbjct: 112 RRGAPVATWVGAS 124
>pdb|3P2A|A Chain A, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|B Chain B, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|C Chain C, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|D Chain D, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
Length = 148
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Query: 50 IANFSATWCGPCRMIAPFFSEL-SEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKD 108
+ +F A WCGPCR AP F+E +E+ + F+ V+ + ST + I++ PT ++
Sbjct: 59 VIDFWAPWCGPCRSFAPIFAETAAERAGKVRFVKVNTEAEPALSTRFRIRSIPTIXLYRN 118
Query: 109 GQQVDKLVGA 118
G+ +D L GA
Sbjct: 119 GKXIDXLNGA 128
>pdb|2H71|A Chain A, Crystal Structure Of Thioredoxin Mutant D47e In Hexagonal
(P61) Space Group
pdb|2H71|B Chain B, Crystal Structure Of Thioredoxin Mutant D47e In Hexagonal
(P61) Space Group
Length = 108
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 49 VIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVDELVEFSTSWDIKATPTFFFLK 107
++ +F A WCGPC+MIAP E++E+Y L +++D+ + + I+ PT K
Sbjct: 23 ILVDFWAEWCGPCKMIAPILDEIAEEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFK 82
Query: 108 DGQQVDKLVGA 118
+G+ VGA
Sbjct: 83 NGEVAATKVGA 93
>pdb|2H70|A Chain A, Crystal Structure Of Thioredoxin Mutant D9e In Hexagonal
(P61) Space Group
pdb|2H70|B Chain B, Crystal Structure Of Thioredoxin Mutant D9e In Hexagonal
(P61) Space Group
Length = 108
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 51/89 (57%), Gaps = 4/89 (4%)
Query: 31 TKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVDELV 89
T+D +D + +A +G I++ +F A WCGPC+MIAP E++++Y L +++D+
Sbjct: 8 TEDSFDTDVLKA--DGAILV-DFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNP 64
Query: 90 EFSTSWDIKATPTFFFLKDGQQVDKLVGA 118
+ + I+ PT K+G+ VGA
Sbjct: 65 GTAPKYGIRGIPTLLLFKNGEVAATKVGA 93
>pdb|3DXB|A Chain A, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|B Chain B, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|C Chain C, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|D Chain D, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|E Chain E, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|F Chain F, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|G Chain G, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|H Chain H, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
Length = 222
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 49 VIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVDELVEFSTSWDIKATPTFFFLK 107
++ +F A WCGPC+MIAP E++++Y L +++D+ + + I+ PT K
Sbjct: 33 ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFK 92
Query: 108 DGQQVDKLVGA 118
+G+ VGA
Sbjct: 93 NGEVAATKVGA 103
>pdb|2H76|A Chain A, Crystal Structure Of Thioredoxin Mutant D10e In Hexagonal
(P61) Space Group
pdb|2H76|B Chain B, Crystal Structure Of Thioredoxin Mutant D10e In Hexagonal
(P61) Space Group
Length = 108
Score = 53.9 bits (128), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 49 VIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVDELVEFSTSWDIKATPTFFFLK 107
++ +F A WCGPC+MIAP E++++Y L +++D+ + + I+ PT K
Sbjct: 23 ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFK 82
Query: 108 DGQQVDKLVGA 118
+G+ VGA
Sbjct: 83 NGEVAATKVGA 93
>pdb|2H75|A Chain A, Crystal Structure Of Thioredoxin Mutant D13e In Hexagonal
(P61) Space Group
pdb|2H75|B Chain B, Crystal Structure Of Thioredoxin Mutant D13e In Hexagonal
(P61) Space Group
Length = 108
Score = 53.9 bits (128), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 49 VIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVDELVEFSTSWDIKATPTFFFLK 107
++ +F A WCGPC+MIAP E++++Y L +++D+ + + I+ PT K
Sbjct: 23 ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFK 82
Query: 108 DGQQVDKLVGA 118
+G+ VGA
Sbjct: 83 NGEVAATKVGA 93
>pdb|2H74|A Chain A, Crystal Structure Of Thioredoxin Mutant D2e In Hexagonal
(P61) Space Group
pdb|2H74|B Chain B, Crystal Structure Of Thioredoxin Mutant D2e In Hexagonal
(P61) Space Group
Length = 108
Score = 53.9 bits (128), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 49 VIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVDELVEFSTSWDIKATPTFFFLK 107
++ +F A WCGPC+MIAP E++++Y L +++D+ + + I+ PT K
Sbjct: 23 ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFK 82
Query: 108 DGQQVDKLVGA 118
+G+ VGA
Sbjct: 83 NGEVAATKVGA 93
>pdb|1ZZY|A Chain A, Crystal Structure Of Thioredoxin Mutant L7v
pdb|1ZZY|B Chain B, Crystal Structure Of Thioredoxin Mutant L7v
Length = 108
Score = 53.9 bits (128), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 50/90 (55%), Gaps = 4/90 (4%)
Query: 30 TTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVDEL 88
T D +D + +A +G I++ +F A WCGPC+MIAP E++++Y L +++D+
Sbjct: 7 VTDDSFDTDVLKA--DGAILV-DFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQN 63
Query: 89 VEFSTSWDIKATPTFFFLKDGQQVDKLVGA 118
+ + I+ PT K+G+ VGA
Sbjct: 64 PGTAPKYGIRGIPTLLLFKNGEVAATKVGA 93
>pdb|2H73|A Chain A, Crystal Structure Of Thioredoxin Mutant D43e In Hexagonal
(P61) Space Group
pdb|2H73|B Chain B, Crystal Structure Of Thioredoxin Mutant D43e In Hexagonal
(P61) Space Group
Length = 108
Score = 53.9 bits (128), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 49 VIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVDELVEFSTSWDIKATPTFFFLK 107
++ +F A WCGPC+MIAP E++++Y L +++D+ + + I+ PT K
Sbjct: 23 ILVDFWAEWCGPCKMIAPILEEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFK 82
Query: 108 DGQQVDKLVGA 118
+G+ VGA
Sbjct: 83 NGEVAATKVGA 93
>pdb|2FCH|A Chain A, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|B Chain B, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|C Chain C, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|D Chain D, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|E Chain E, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|F Chain F, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|G Chain G, Crystal Structure Of Thioredoxin Mutant G74s
Length = 108
Score = 53.9 bits (128), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 51/89 (57%), Gaps = 4/89 (4%)
Query: 31 TKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVDELV 89
T D +D + +A +G I++ +F A WCGPC+MIAP E++++Y L +++D+
Sbjct: 8 TDDSFDTDVLKA--DGAILV-DFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNP 64
Query: 90 EFSTSWDIKATPTFFFLKDGQQVDKLVGA 118
+ + I++ PT K+G+ VGA
Sbjct: 65 GTAPKYGIRSIPTLLLFKNGEVAATKVGA 93
>pdb|2TRX|A Chain A, Crystal Structure Of Thioredoxin From Escherichia Coli At
1.68 Angstroms Resolution
pdb|2TRX|B Chain B, Crystal Structure Of Thioredoxin From Escherichia Coli At
1.68 Angstroms Resolution
pdb|1T7P|B Chain B, T7 Dna Polymerase Complexed To Dna PrimerTEMPLATE,A
Nucleoside Triphosphate, And Its Processivity Factor
Thioredoxin
pdb|1SKR|B Chain B, T7 Dna Polymerase Complexed To Dna Primer/template And
Ddatp
pdb|1SKS|B Chain B, Binary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On The
Template
pdb|1SKW|B Chain B, Binary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template
pdb|1SL0|B Chain B, Ternary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template And An Incoming Nucleotide
pdb|1SL0|D Chain D, Ternary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template And An Incoming Nucleotide
pdb|1SL1|B Chain B, Binary 5' Complex Of T7 Dna Polymerase With A Dna
Primer/template Containing A Cis-syn Thymine Dimer On
The Template
pdb|1SL2|B Chain B, Ternary 5' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On The
Template And An Incoming Nucleotide
pdb|1TK0|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Ddctp At The Insertion Site
pdb|1TK5|B Chain B, T7 Dna Polymerase Binary Complex With 8 Oxo Guanosine In
The Templating Strand
pdb|1TK8|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Damp At The Elongation Site
pdb|1TKD|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Dcmp At The Elongation Site
pdb|1T8E|B Chain B, T7 Dna Polymerase Ternary Complex With Dctp At The
Insertion Site.
pdb|1X9M|B Chain B, T7 Dna Polymerase In Complex With An N-2-
Acetylaminofluorene-adducted Dna
pdb|1X9S|B Chain B, T7 Dna Polymerase In Complex With A PrimerTEMPLATE DNA
Containing A Disordered N-2 Aminofluorene On The
Template, Crystallized With Dideoxy-Ctp As The Incoming
Nucleotide.
pdb|1X9W|B Chain B, T7 Dna Polymerase In Complex With A Primer/template Dna
Containing A Disordered N-2 Aminofluorene On The
Template, Crystallized With Dideoxy-atp As The Incoming
Nucleotide.
pdb|2BTO|T Chain T, Structure Of Btuba From Prosthecobacter Dejongeii
pdb|1ZYQ|B Chain B, T7 Dna Polymerase In Complex With 8og And Incoming Ddatp
pdb|2AJQ|B Chain B, Structure Of Replicative Dna Polymerase Provides Insigts
Into The Mechanisms For Processivity, Frameshifting And
Editing
pdb|2AJQ|I Chain I, Structure Of Replicative Dna Polymerase Provides Insigts
Into The Mechanisms For Processivity, Frameshifting And
Editing
pdb|2H6X|A Chain A, Crystal Structure Of Thioredoxin Wild Type In Hexagonal
(P61) Space Group
pdb|2H6X|B Chain B, Crystal Structure Of Thioredoxin Wild Type In Hexagonal
(P61) Space Group
Length = 108
Score = 53.9 bits (128), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 50/89 (56%), Gaps = 4/89 (4%)
Query: 31 TKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVDELV 89
T D +D + +A +G I++ +F A WCGPC+MIAP E++++Y L +++D+
Sbjct: 8 TDDSFDTDVLKA--DGAILV-DFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNP 64
Query: 90 EFSTSWDIKATPTFFFLKDGQQVDKLVGA 118
+ + I+ PT K+G+ VGA
Sbjct: 65 GTAPKYGIRGIPTLLLFKNGEVAATKVGA 93
>pdb|1XOB|A Chain A, Thioredoxin (Reduced Dithio Form), Nmr, 20 Structures
pdb|1XOA|A Chain A, Thioredoxin (Oxidized Disulfide Form), Nmr, 20 Structures
Length = 108
Score = 53.9 bits (128), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 49 VIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVDELVEFSTSWDIKATPTFFFLK 107
++ +F A WCGPC+MIAP E++++Y L +++D+ + + I+ PT K
Sbjct: 23 ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFK 82
Query: 108 DGQQVDKLVGA 118
+G+ VGA
Sbjct: 83 NGEVAATKVGA 93
>pdb|2F51|A Chain A, Structure Of Trichomonas Vaginalis Thioredoxin
pdb|2F51|B Chain B, Structure Of Trichomonas Vaginalis Thioredoxin
Length = 118
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 48/84 (57%), Gaps = 4/84 (4%)
Query: 48 IVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFL- 106
+V+ +F ATWCGPC+ + ++E + F+ VDVD+ + ++ + + P FF+
Sbjct: 25 LVLVDFFATWCGPCQRLGQILPSIAEANKDVTFIKVDVDKNGNAADAYGVSSIPALFFVK 84
Query: 107 KDGQQV---DKLVGANKPELQKKV 127
K+G ++ D+ VGA+ ++ +
Sbjct: 85 KEGNEIKTLDQFVGADVSRIKADI 108
>pdb|2EIO|A Chain A, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|B Chain B, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|C Chain C, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|D Chain D, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 53.5 bits (127), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 50/89 (56%), Gaps = 4/89 (4%)
Query: 31 TKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVDELV 89
T D +D + +A +G I++ +F A WCGPC+MIAP E++++Y L +++D+
Sbjct: 8 TDDSFDTDVLKA--DGAILV-DFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNP 64
Query: 90 EFSTSWDIKATPTFFFLKDGQQVDKLVGA 118
+ + I+ PT K+G+ VGA
Sbjct: 65 GTAPKYGIRGIPTLLLFKNGEVAATKVGA 93
>pdb|2EIR|A Chain A, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|B Chain B, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|C Chain C, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|D Chain D, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 53.5 bits (127), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 50/89 (56%), Gaps = 4/89 (4%)
Query: 31 TKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVDELV 89
T D +D + +A +G I++ +F A WCGPC+MIAP E++++Y L +++D+
Sbjct: 8 TDDSFDTDVLKA--DGAILV-DFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNP 64
Query: 90 EFSTSWDIKATPTFFFLKDGQQVDKLVGA 118
+ + I+ PT K+G+ VGA
Sbjct: 65 GTAPKYGIRGIPTLLLFKNGEVAATKVGA 93
>pdb|2H6Y|A Chain A, Crystal Structure Of Thioredoxin Mutant E48d In Hexagonal
(P61) Space Group
pdb|2H6Y|B Chain B, Crystal Structure Of Thioredoxin Mutant E48d In Hexagonal
(P61) Space Group
Length = 108
Score = 53.1 bits (126), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 49/89 (55%), Gaps = 4/89 (4%)
Query: 31 TKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVDELV 89
T D +D + +A +G I++ +F A WCGPC+MIAP E+++ Y L +++D+
Sbjct: 8 TDDSFDTDVLKA--DGAILV-DFWAEWCGPCKMIAPILDEIADDYQGKLTVAKLNIDQNP 64
Query: 90 EFSTSWDIKATPTFFFLKDGQQVDKLVGA 118
+ + I+ PT K+G+ VGA
Sbjct: 65 GTAPKYGIRGIPTLLLFKNGEVAATKVGA 93
>pdb|2KUC|A Chain A, Solution Structure Of A Putative Disulphide-Isomerase From
Bacteroides Thetaiotaomicron
Length = 130
Score = 53.1 bits (126), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 54/105 (51%), Gaps = 8/105 (7%)
Query: 37 QKMSEASKEGKIVIANFSATWCGPCRMIAP--FFSELSEKYPSLMFLLVDVD----ELVE 90
+ + A E K++ + TWCGPC+ ++ F L Y + F+ + +D E VE
Sbjct: 18 EALKRAEVEDKLLFVDCFTTWCGPCKRLSKVVFKDSLVADYFNRHFVNLKMDMEKGEGVE 77
Query: 91 FSTSWDIKATPTFFFLK-DGQQVDKLVGA-NKPELQKKVAAAVDS 133
+ + A PT F+ G+ V +LVGA + PEL KKV V+S
Sbjct: 78 LRKKYGVHAYPTLLFINSSGEVVYRLVGAEDAPELLKKVKLGVES 122
>pdb|2H72|A Chain A, Crystal Structure Of Thioredoxin Mutant E85d In Hexagonal
(P61) Space Group
pdb|2H72|B Chain B, Crystal Structure Of Thioredoxin Mutant E85d In Hexagonal
(P61) Space Group
Length = 108
Score = 53.1 bits (126), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 49/89 (55%), Gaps = 4/89 (4%)
Query: 31 TKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVDELV 89
T D +D + +A +G I++ +F A WCGPC+MIAP E++++Y L +++D+
Sbjct: 8 TDDSFDTDVLKA--DGAILV-DFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNP 64
Query: 90 EFSTSWDIKATPTFFFLKDGQQVDKLVGA 118
+ + I+ PT K+G VGA
Sbjct: 65 GTAPKYGIRGIPTLLLFKNGDVAATKVGA 93
>pdb|2DJ2|A Chain A, The Solution Structure Of The Second Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A4
Length = 120
Score = 53.1 bits (126), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 8/93 (8%)
Query: 25 NVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFF----SELSEKYPSLMF 80
V+L TKD +D ++ A I++ F A WCG C+ +AP + ELS++ P +
Sbjct: 7 GVTLSLTKDNFDDVVNNAD----IILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPL 62
Query: 81 LLVDVDELVEFSTSWDIKATPTFFFLKDGQQVD 113
VD E + + +D+ PT + G+ D
Sbjct: 63 AKVDATEQTDLAKRFDVSGYPTLKIFRKGRPFD 95
>pdb|2EIQ|A Chain A, Design Of Disulfide-linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIQ|B Chain B, Design Of Disulfide-linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 52.8 bits (125), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 50/89 (56%), Gaps = 4/89 (4%)
Query: 31 TKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVDELV 89
T D +D + +A +G I++ +F A WCGPC+MIAP E++++Y L +++D+
Sbjct: 8 TDDSFDTDVLKA--DGAILV-DFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNP 64
Query: 90 EFSTSWDIKATPTFFFLKDGQQVDKLVGA 118
+ + I+ PT K+G+ VGA
Sbjct: 65 GTAPKYGIRGIPTLLLFKNGEVAACKVGA 93
>pdb|2TIR|A Chain A, Crystal Structure Analysis Of A Mutant Escherichia Coli
Thioredoxin In Which Lysine 36 Is Replaced By Glutamic
Acid
Length = 108
Score = 52.8 bits (125), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 49/89 (55%), Gaps = 4/89 (4%)
Query: 31 TKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVDELV 89
T D +D + +A +G I++ +F A WCGPC MIAP E++++Y L +++D+
Sbjct: 8 TDDSFDTDVLKA--DGAILV-DFWAEWCGPCEMIAPILDEIADEYQGKLTVAKLNIDQNP 64
Query: 90 EFSTSWDIKATPTFFFLKDGQQVDKLVGA 118
+ + I+ PT K+G+ VGA
Sbjct: 65 GTAPKYGIRGIPTLLLFKNGEVAATKVGA 93
>pdb|2H6Z|A Chain A, Crystal Structure Of Thioredoxin Mutant E44d In Hexagonal
(P61) Space Group
pdb|2H6Z|B Chain B, Crystal Structure Of Thioredoxin Mutant E44d In Hexagonal
(P61) Space Group
Length = 108
Score = 52.4 bits (124), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 50/89 (56%), Gaps = 4/89 (4%)
Query: 31 TKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVDELV 89
T D +D + +A +G I++ +F A WCGPC+MIAP +++++Y L +++D+
Sbjct: 8 TDDSFDTDVLKA--DGAILV-DFWAEWCGPCKMIAPILDDIADEYQGKLTVAKLNIDQNP 64
Query: 90 EFSTSWDIKATPTFFFLKDGQQVDKLVGA 118
+ + I+ PT K+G+ VGA
Sbjct: 65 GTAPKYGIRGIPTLLLFKNGEVAATKVGA 93
>pdb|3IDV|A Chain A, Crystal Structure Of The A0a Fragment Of Erp72
Length = 241
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 48/92 (52%), Gaps = 8/92 (8%)
Query: 26 VSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFS----ELSEKYPSLMFL 81
V+LV TK+ +D+ +++A I++ F A WCG C+ +AP + ELS++ P +
Sbjct: 131 VTLVLTKENFDEVVNDAD----IILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLA 186
Query: 82 LVDVDELVEFSTSWDIKATPTFFFLKDGQQVD 113
VD + + +D+ PT + G+ D
Sbjct: 187 KVDATAETDLAKRFDVSGYPTLKIFRKGRPYD 218
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
Query: 49 VIANFSATWCGPCRMIAPFFSE----LSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFF 104
V+ F A WCG C+ AP + + L +K P + +D ++ +D+ PT
Sbjct: 35 VLLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVAKIDATSASVLASRFDVSGYPTIK 94
Query: 105 FLKDGQQVDKLVGANKPELQKKV 127
LK GQ VD + E+ KV
Sbjct: 95 ILKKGQAVDYEGSRTQEEIVAKV 117
>pdb|2L5L|A Chain A, Solution Structure Of Thioredoxin From Bacteroides
Vulgatus
Length = 136
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 47 KIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLL-VDVDELVEFSTSWDIKATPTFFF 105
K I +F A WCGPC+M+AP EL+++Y + + VD ++ E + ++ I++ P+ F
Sbjct: 39 KPAIVDFYADWCGPCKMVAPILDELAKEYDGQIVIYKVDTEKEQELAGAFGIRSIPSILF 98
Query: 106 L 106
+
Sbjct: 99 I 99
>pdb|2PU9|C Chain C, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin F
pdb|2PVO|C Chain C, Crystal Srtucture Of The Ternary Complex Between
Thioredoxin F, Ferredoxin, And Ferredoxin: Thioredoxin
Reductase
Length = 111
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 58/108 (53%), Gaps = 4/108 (3%)
Query: 24 GNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLV 83
G V+ V W + +A+ + +V+ F+ WCGP + +AP + +L+E+Y ++FL +
Sbjct: 5 GKVTEVNKDTFWP--IVKAAGDKPVVLDMFT-QWCGPSKAMAPKYEKLAEEYLDVIFLKL 61
Query: 84 DVD-ELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKVAAA 130
D + E + I+ PTF LK+ V ++ GA +L + + AA
Sbjct: 62 DCNQENKTLAKELGIRVVPTFKILKENSVVGEVTGAKYDKLLEAIQAA 109
>pdb|2O8V|B Chain B, Paps Reductase In A Covalent Complex With Thioredoxin C35a
Length = 128
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 49/89 (55%), Gaps = 4/89 (4%)
Query: 31 TKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVDELV 89
T D +D + +A +G I++ +F A WCGP +MIAP E++++Y L +++D+
Sbjct: 28 TDDSFDTDVLKA--DGAILV-DFWAEWCGPAKMIAPILDEIADEYQGKLTVAKLNIDQNP 84
Query: 90 EFSTSWDIKATPTFFFLKDGQQVDKLVGA 118
+ + I+ PT K+G+ VGA
Sbjct: 85 GTAPKYGIRGIPTLLLFKNGEVAATKVGA 113
>pdb|1SRX|A Chain A, Three-Dimensional Structure Of Escherichia Coli
Thioredoxin-S2 To 2.8 Angstroms Resolution
Length = 108
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 49/89 (55%), Gaps = 4/89 (4%)
Query: 31 TKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVDELV 89
T D +D + +A +G I++ +F A WCGPC+MIAP E++++Y L +++D+
Sbjct: 8 TDDSFDTDLVKA--DGAILV-DFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNP 64
Query: 90 EFSTSWDIKATPTFFFLKDGQQVDKLVGA 118
+ + + PT K+G+ VGA
Sbjct: 65 GTAPKYIERGIPTLLLFKNGEVAATKVGA 93
>pdb|2FD3|A Chain A, Crystal Structure Of Thioredoxin Mutant P34h
pdb|2FD3|B Chain B, Crystal Structure Of Thioredoxin Mutant P34h
Length = 108
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 49 VIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVDELVEFSTSWDIKATPTFFFLK 107
++ +F A WCG C+MIAP E++++Y L +++D+ + + I+ PT K
Sbjct: 23 ILVDFWAEWCGHCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFK 82
Query: 108 DGQQVDKLVGA 118
+G+ VGA
Sbjct: 83 NGEVAATKVGA 93
>pdb|1F6M|C Chain C, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|D Chain D, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|G Chain G, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|H Chain H, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
Length = 108
Score = 50.1 bits (118), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 49 VIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVDELVEFSTSWDIKATPTFFFLK 107
++ +F A WCGP +MIAP E++++Y L +++D+ + + I+ PT K
Sbjct: 23 ILVDFWAEWCGPSKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFK 82
Query: 108 DGQQVDKLVGA 118
+G+ VGA
Sbjct: 83 NGEVAATKVGA 93
>pdb|1THO|A Chain A, Crystal Structure Of A Mutant Escherichia Coli Thioredoxin
With An Arginine Insertion In The Active Site
Length = 109
Score = 49.3 bits (116), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 40/72 (55%), Gaps = 2/72 (2%)
Query: 49 VIANFSATWCG-PCRMIAPFFSELSEKYPS-LMFLLVDVDELVEFSTSWDIKATPTFFFL 106
++ +F A WCG PC+MIAP E++++Y L +++D+ + + I+ PT
Sbjct: 23 ILVDFWAEWCGRPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLF 82
Query: 107 KDGQQVDKLVGA 118
K+G+ VGA
Sbjct: 83 KNGEVAATKVGA 94
>pdb|1KEB|A Chain A, Crystal Structure Of Double Mutant M37l,P40s E.Coli
Thioredoxin
pdb|1KEB|B Chain B, Crystal Structure Of Double Mutant M37l,P40s E.Coli
Thioredoxin
Length = 108
Score = 49.3 bits (116), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 49 VIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVDELVEFSTSWDIKATPTFFFLK 107
++ +F A WCGPC++IA E++++Y L +++D+ + + I+ PT K
Sbjct: 23 ILVDFWAEWCGPCKLIASILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFK 82
Query: 108 DGQQVDKLVGA 118
+G+ VGA
Sbjct: 83 NGEVAATKVGA 93
>pdb|1T00|A Chain A, The Structure Of Thioredoxin From S. Coelicolor
Length = 112
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 2/80 (2%)
Query: 44 KEGKIVIANFSATWCGPCRMIAPFFSELSEKY-PSLMFLLVDVDELVEFSTSWDIKATPT 102
K K V+ +F A WCGPCR IAP ++ +Y + + +++DE + + + + PT
Sbjct: 21 KNDKPVLVDFWAAWCGPCRQIAPSLEAIAAEYGDKIEIVKLNIDENPGTAAKYGVMSIPT 80
Query: 103 FFFLKDGQQVDKLVGANKPE 122
+ G+ +VGA KP+
Sbjct: 81 LNVYQGGEVAKTIVGA-KPK 99
>pdb|3UVT|A Chain A, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|B Chain B, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|C Chain C, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|D Chain D, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|E Chain E, Crystal Structure Of The Third Catalytic Domain Of Erp46
Length = 111
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 50/100 (50%), Gaps = 9/100 (9%)
Query: 24 GNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEK-YPSLMFL- 81
G+ L T++ +D ++E I F A WCG C+ +AP + ELS+K +P L +
Sbjct: 4 GSTVLALTENNFDDTIAEG-----ITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVK 58
Query: 82 LVDVDELVE--FSTSWDIKATPTFFFLKDGQQVDKLVGAN 119
+ +VD E + + ++ PT + G++V + G
Sbjct: 59 IAEVDCTAERNICSKYSVRGYPTLLLFRGGKKVSEHSGGR 98
>pdb|2DIZ|A Chain A, The Solution Structure Of The Third Thioredoxin Domain Of
Human Thioredoxin Domain-Containing Protein 5
Length = 117
Score = 46.2 bits (108), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 9/96 (9%)
Query: 28 LVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEK-YPSLMFL-LVDV 85
L T++ +D ++E I F A WCG C+ +AP + ELS+K +P L + + +V
Sbjct: 10 LALTENNFDDTIAEG-----ITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEV 64
Query: 86 DELVE--FSTSWDIKATPTFFFLKDGQQVDKLVGAN 119
D E + + ++ PT + G++V + G
Sbjct: 65 DCTAERNICSKYSVRGYPTLLLFRGGKKVSEHSGGR 100
>pdb|3D6I|A Chain A, Structure Of The Thioredoxin-Like Domain Of Yeast
Glutaredoxin 3
pdb|3D6I|B Chain B, Structure Of The Thioredoxin-Like Domain Of Yeast
Glutaredoxin 3
Length = 112
Score = 45.8 bits (107), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 4/79 (5%)
Query: 47 KIVIANFSATWCGPCRMIAPFFSELSEKYPS---LMFLLVDVDELVEFSTSWDIKATPTF 103
K+++ F +W PC+ + F +S + PS + FL +D DE E S ++I A P F
Sbjct: 22 KLIVLYFHTSWAEPCKALKQVFEAISNE-PSNSNVSFLSIDADENSEISELFEISAVPYF 80
Query: 104 FFLKDGQQVDKLVGANKPE 122
+ G + +L GA+ E
Sbjct: 81 IIIHKGTILKELSGADPKE 99
>pdb|3UJ1|A Chain A, Crystal Structure Of The Third Thioredoxin Domain Of Human
Erp46
Length = 110
Score = 45.4 bits (106), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 9/96 (9%)
Query: 28 LVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEK-YPSLMFL-LVDV 85
L T++ +D ++E I F A WCG C+ +AP + ELS+K +P L + + +V
Sbjct: 3 LALTENNFDDTIAEG-----ITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEV 57
Query: 86 DELVE--FSTSWDIKATPTFFFLKDGQQVDKLVGAN 119
D E + + ++ PT + G++V + G
Sbjct: 58 DCTAERNICSKYSVRGYPTLLLFRGGKKVSEHSGGR 93
>pdb|1TXX|A Chain A, Active-Site Variant Of E.Coli Thioredoxin
Length = 108
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 49 VIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVDELVEFSTSWDIKATPTFFFLK 107
++ +F A WC C+MIAP E++++Y L +++D+ + + I+ PT K
Sbjct: 23 ILVDFWAEWCVWCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFK 82
Query: 108 DGQQVDKLVGA 118
+G+ VGA
Sbjct: 83 NGEVAATKVGA 93
>pdb|3GNJ|A Chain A, The Crystal Structure Of A Thioredoxin-Related Protein
From Desulfitobacterium Hafniense Dcb
pdb|3GNJ|B Chain B, The Crystal Structure Of A Thioredoxin-Related Protein
From Desulfitobacterium Hafniense Dcb
pdb|3GNJ|C Chain C, The Crystal Structure Of A Thioredoxin-Related Protein
From Desulfitobacterium Hafniense Dcb
pdb|3GNJ|D Chain D, The Crystal Structure Of A Thioredoxin-Related Protein
From Desulfitobacterium Hafniense Dcb
Length = 111
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 2/90 (2%)
Query: 45 EGKIVIANFSATWCGPCRMIAPFFSELSEKYP-SLMFLLVDVDELVEFSTSWDIKATPTF 103
EGK + FS C C+ + P EL Y S F VDV+E + +K P
Sbjct: 21 EGKACLVXFSRKNCHVCQKVTPVLEELRLNYEESFGFYYVDVEEEKTLFQRFSLKGVPQI 80
Query: 104 FFLKDGQQVDKLVG-ANKPELQKKVAAAVD 132
+ KDG+ K G E+++ +A ++
Sbjct: 81 LYFKDGEYKGKXAGDVEDDEVEQXIADVLE 110
>pdb|1OAZ|A Chain A, Ige Fv Spe7 Complexed With A Recombinant Thioredoxin
pdb|1OAZ|B Chain B, Ige Fv Spe7 Complexed With A Recombinant Thioredoxin
Length = 123
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 15/85 (17%)
Query: 49 VIANFSATWCGP--------------CRMIAPFFSELSEKYPS-LMFLLVDVDELVEFST 93
++ +F A WCGP C+MIAP E++++Y L +++D+ +
Sbjct: 24 ILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAP 83
Query: 94 SWDIKATPTFFFLKDGQQVDKLVGA 118
+ I+ PT K+G+ VGA
Sbjct: 84 KYGIRGIPTLLLFKNGEVAATKVGA 108
>pdb|3CXG|A Chain A, Crystal Structure Of Plasmodium Falciparum Thioredoxin,
Pfi0790w
pdb|3CXG|B Chain B, Crystal Structure Of Plasmodium Falciparum Thioredoxin,
Pfi0790w
Length = 133
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 57/116 (49%), Gaps = 8/116 (6%)
Query: 15 GEHPVEFAGGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFF-SELSE 73
G + F G ++ + K+ +S + ++ F A WC PC I +F ++L+
Sbjct: 10 GRENLYFQGQSI-YIELKNTGSLNQVFSSTQNSSIVIKFGAVWCKPCNKIKEYFKNQLNY 68
Query: 74 KYPSLMFLLVDVDELVEFSTSWDIKATPTF-FFLKDGQQ---VDKLVGANKPELQK 125
Y +L+ +DVD + + +IKA PTF F+ + V + GAN+ +++K
Sbjct: 69 YYVTLV--DIDVDIHPKLNDQHNIKALPTFEFYFNLNNEWVLVHTVEGANQNDIEK 122
>pdb|3HDC|A Chain A, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
Length = 158
Score = 43.9 bits (102), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 45/87 (51%), Gaps = 6/87 (6%)
Query: 37 QKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS--LMFLLVDVDELVEFSTS 94
+ S A GKIV+ NF A+WC CR P L + +P L+ L V+V++ F
Sbjct: 32 ENKSLAQYRGKIVLVNFWASWCPYCRDEXPSXDRLVKSFPKGDLVVLAVNVEK--RFPEK 89
Query: 95 WDIKATPTFFFLKDGQ-QVDKLVGANK 120
+ +A +F FL D QV + GAN+
Sbjct: 90 YR-RAPVSFNFLSDATGQVQQRYGANR 115
>pdb|2DJ1|A Chain A, The Solution Structure Of The First Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A4
Length = 140
Score = 43.9 bits (102), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 4/83 (4%)
Query: 49 VIANFSATWCGPCRMIAPFF----SELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFF 104
V+ F A WCG C+ AP + S L + P + +D ++ +D+ PT
Sbjct: 37 VLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDATSASMLASKFDVSGYPTIK 96
Query: 105 FLKDGQQVDKLVGANKPELQKKV 127
LK GQ VD + E+ KV
Sbjct: 97 ILKKGQAVDYDGSRTQEEIVAKV 119
>pdb|1ZCP|A Chain A, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
pdb|1ZCP|B Chain B, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
pdb|1ZCP|C Chain C, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
pdb|1ZCP|D Chain D, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
Length = 108
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 47/89 (52%), Gaps = 4/89 (4%)
Query: 31 TKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVDELV 89
T D +D + +A +G I++ +F A WC +MIAP E++++Y L +++D+
Sbjct: 8 TDDSFDTDVLKA--DGAILV-DFWAEWCACAKMIAPILDEIADEYQGKLTVAKLNIDQNP 64
Query: 90 EFSTSWDIKATPTFFFLKDGQQVDKLVGA 118
+ + I+ PT K+G+ VGA
Sbjct: 65 GTAPKYGIRGIPTLLLFKNGEVAATKVGA 93
>pdb|3GL3|A Chain A, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
pdb|3GL3|B Chain B, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
pdb|3GL3|C Chain C, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
pdb|3GL3|D Chain D, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
Length = 152
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 58/118 (49%), Gaps = 28/118 (23%)
Query: 42 ASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVD--------------E 87
+ K G +V +F A+WCGPCR P+ ++ KY + F +V V+
Sbjct: 24 SDKTGSVVYLDFWASWCGPCRQSFPWXNQXQAKYKAKGFQVVAVNLDAKTGDAXKFLAQV 83
Query: 88 LVEFSTSWD----------IKATPTFFFL-KDGQQVDKLVG---ANKPELQKKVAAAV 131
EF+ ++D +K PT F + ++G+ + + VG A+K L++++ AA+
Sbjct: 84 PAEFTVAFDPKGQTPRLYGVKGXPTSFLIDRNGKVLLQHVGFRPADKEALEQQILAAL 141
>pdb|2PPT|A Chain A, Crystal Structure Of Thioredoxin-2
pdb|2PPT|B Chain B, Crystal Structure Of Thioredoxin-2
Length = 155
Score = 43.5 bits (101), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 42/98 (42%), Gaps = 3/98 (3%)
Query: 25 NVSLVTTK--DIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLL 82
L+T K I ++ A ++ ++ +F A WCGPCR +AP F + + L
Sbjct: 41 GAGLITGKVAGIDPAILARAERDDLPLLVDFWAPWCGPCRQMAPQFQAAAATLAGQVRLA 100
Query: 83 -VDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGAN 119
+D + I+ P F G+++ + GA
Sbjct: 101 KIDTQAHPAVAGRHRIQGIPAFILFHKGRELARAAGAR 138
>pdb|2LJA|A Chain A, Solution Structure Of A Putative Thiol-Disulfide
Oxidoreductase From Bacteroides Vulgatus
Length = 152
Score = 42.4 bits (98), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 25/43 (58%)
Query: 33 DIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKY 75
DI + +S A +GK + + ATWCGPCR P EL EKY
Sbjct: 17 DINGKTVSLADLKGKYIYIDVWATWCGPCRGELPALKELEEKY 59
>pdb|1MEK|A Chain A, Human Protein Disulfide Isomerase, Nmr, 40 Structures
Length = 120
Score = 42.4 bits (98), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 37/75 (49%), Gaps = 4/75 (5%)
Query: 39 MSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS----LMFLLVDVDELVEFSTS 94
+EA K ++ F A WCG C+ +AP +++ + K + + VD E + +
Sbjct: 17 FAEALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEESDLAQQ 76
Query: 95 WDIKATPTFFFLKDG 109
+ ++ PT F ++G
Sbjct: 77 YGVRGYPTIKFFRNG 91
>pdb|2ALB|A Chain A, Nmr Structure Of The N-Terminal Domain A Of The
Glycoprotein Chaperone Erp57
Length = 113
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 41/91 (45%), Gaps = 2/91 (2%)
Query: 28 LVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLL-VDVD 86
L T D ++ ++S+ G +++ F A WCG C+ +AP + + + ++ L VD
Sbjct: 4 LELTDDNFESRISDTGSAG-LMLVEFFAPWCGHCKRLAPEYEAAATRLKGIVPLAKVDCT 62
Query: 87 ELVEFSTSWDIKATPTFFFLKDGQQVDKLVG 117
+ + PT +DG++ G
Sbjct: 63 ANTNTCNKYGVSGYPTLKIFRDGEEAGAYDG 93
>pdb|2DMM|A Chain A, The Solution Structure Of The Second Thioredoxin Domain Of
Human Protein Disulfide-Isomerase A3
Length = 142
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 43 SKEGKIVIANFSATWCGPCRMIAPFFSELSEKY---PSLMFLLVDVDELVEFSTSWDIKA 99
+ E K V+ F A WCG C+ + P + EL EK P+++ +D + + ++++
Sbjct: 42 NNENKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDA-TANDVPSPYEVRG 100
Query: 100 TPTFFF 105
PT +F
Sbjct: 101 FPTIYF 106
>pdb|3F8U|A Chain A, TapasinERP57 HETERODIMER
pdb|3F8U|C Chain C, TapasinERP57 HETERODIMER
Length = 481
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 43 SKEGKIVIANFSATWCGPCRMIAPFFSELSEKY---PSLMFLLVDVDELVEFSTSWDIKA 99
+ E K V+ F A WCG C+ + P + EL EK P+++ +D + + ++++
Sbjct: 367 NNENKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDA-TANDVPSPYEVRG 425
Query: 100 TPTFFF 105
PT +F
Sbjct: 426 FPTIYF 431
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/91 (21%), Positives = 40/91 (43%), Gaps = 2/91 (2%)
Query: 28 LVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLL-VDVD 86
L T D ++ ++S+ G +++ F A WCG + +AP + + + ++ L VD
Sbjct: 4 LELTDDNFESRISDTGSAG-LMLVEFFAPWCGHAKRLAPEYEAAATRLKGIVPLAKVDCT 62
Query: 87 ELVEFSTSWDIKATPTFFFLKDGQQVDKLVG 117
+ + PT +DG++ G
Sbjct: 63 ANTNTCNKYGVSGYPTLKIFRDGEEAGAYDG 93
>pdb|2DJ3|A Chain A, The Solution Structure Of The Third Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A4
Length = 133
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 5/79 (6%)
Query: 47 KIVIANFSATWCGPCRMIAPFFSELSEKYPS---LMFLLVDVDELVEFSTSWDIKATPTF 103
K V+ F A WCG C+ + P ++ L +KY L+ +D + + ++ PT
Sbjct: 26 KDVLIEFYAPWCGHCKQLEPIYTSLGKKYKGQKDLVIAKMDATANDITNDQYKVEGFPTI 85
Query: 104 FFLKDGQQVD--KLVGANK 120
+F G + + K G N+
Sbjct: 86 YFAPSGDKKNPIKFEGGNR 104
>pdb|2DJ0|A Chain A, The Solution Structure Of The Thioredoxin Domain Of Human
Thioredoxin-Related Transmembrane Protein 2
Length = 137
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 40/88 (45%), Gaps = 13/88 (14%)
Query: 50 IANFSATWCGPCRMIAPFFSELSEKY--PSLMFLLVDVDELVEFSTSWDI------KATP 101
I F A W C+ AP +++LS KY L F VDV + ST + + K P
Sbjct: 30 IVEFFANWSNDCQSFAPIYADLSLKYNCTGLNFGKVDVGRYTDVSTRYKVSTSPLTKQLP 89
Query: 102 TFFFLKDGQQVDKLVGANKPELQKKVAA 129
T + G++ + +P++ KK A
Sbjct: 90 TLILFQGGKEAMR-----RPQIDKKGRA 112
>pdb|3UL3|B Chain B, Structural Insights Into Thioredoxin-2: A Component Of
Malaria Parasite Protein Secretion Machinery
pdb|3UL3|A Chain A, Structural Insights Into Thioredoxin-2: A Component Of
Malaria Parasite Protein Secretion Machinery
Length = 128
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Query: 45 EGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLL-VDVDELVEFSTSWDIKATPTF 103
+ +++ F A WC C M + +L + Y ++LL VD+D+ + + +K+ PT
Sbjct: 41 KNTVIVLYFFAKWCQACTMQSTEMDKLQKYYGKRIYLLKVDLDKNESLARKFSVKSLPTI 100
Query: 104 FFLKDGQQV---DKLVGAN 119
LK+ + D V +N
Sbjct: 101 ILLKNKTMLARKDHFVSSN 119
>pdb|1O73|A Chain A, Tryparedoxin From Trypanosoma Brucei
Length = 144
Score = 39.3 bits (90), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 22/38 (57%)
Query: 38 KMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKY 75
++S S GK V FSA+WC PCR P +E EK+
Sbjct: 20 EVSLGSLVGKTVFLYFSASWCPPCRGFTPVLAEFYEKH 57
>pdb|3OR5|A Chain A, Crystal Structure Of Thiol:disulfide Interchange
Protein, Thioredoxin Family Protein From Chlorobium
Tepidum Tls
Length = 165
Score = 39.3 bits (90), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 26/49 (53%)
Query: 37 QKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDV 85
+ S AS +GK I NF ATWC PCR P ++ + + S F V +
Sbjct: 25 KPFSSASLKGKAYIVNFFATWCPPCRSEIPDXVQVQKTWASRGFTFVGI 73
>pdb|1KNG|A Chain A, Crystal Structure Of Ccmg Reducing Oxidoreductase At 1.14
A
Length = 156
Score = 39.3 bits (90), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 46/113 (40%), Gaps = 25/113 (22%)
Query: 39 MSEASKEGKIVIANFSATWCGPCRMIAPFFSELSE-----------------------KY 75
+ A+ +GK+ + N A+WC PC AP +EL + +Y
Sbjct: 35 LDPAAFKGKVSLVNVWASWCVPCHDEAPLLTELGKDKRFQLVGINYKDAADNARRFLGRY 94
Query: 76 PSLMFLLVDVDELVEFSTSWDIKATP-TFFFLKDGQQVDKLVGANKPELQKKV 127
+ F V VD S W + P TF ++G V KLVG P+ + V
Sbjct: 95 GN-PFGRVGVDANGRASIEWGVYGVPETFVVGREGTIVYKLVGPITPDNLRSV 146
>pdb|2R2J|A Chain A, Crystal Structure Of Human Erp44
Length = 382
Score = 39.3 bits (90), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 47/94 (50%), Gaps = 12/94 (12%)
Query: 23 GGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELS----EKYPS- 77
G ++ + T++I D+ ++ A + + NF A WC + + P F E S E++P+
Sbjct: 4 GSEITSLDTENI-DEILNNAD----VALVNFYADWCRFSQXLHPIFEEASDVIKEEFPNE 58
Query: 78 --LMFLLVDVDELVEFSTSWDIKATPTFFFLKDG 109
++F VD D+ + + + I PT ++G
Sbjct: 59 NQVVFARVDCDQHSDIAQRYRISKYPTLKLFRNG 92
>pdb|1THX|A Chain A, Thioredoxin-2
Length = 115
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Query: 40 SEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP-SLMFLLVDVDELVEFSTSWDIK 98
SE K + V+ F A+WCGPC++++P + + Y L + +++D + ++
Sbjct: 19 SEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEIDPNPTTVKKYKVE 78
Query: 99 ATPTFFFLKDGQQVDKLVGA 118
P +K Q +D G
Sbjct: 79 GVPALRLVKGEQILDSTEGV 98
>pdb|3QDN|A Chain A, Putative Thioredoxin Protein From Salmonella Typhimurium
pdb|3QDN|B Chain B, Putative Thioredoxin Protein From Salmonella Typhimurium
Length = 287
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 39/80 (48%), Gaps = 4/80 (5%)
Query: 61 CRMIAPFFSELSEKYPSLMFLL-VDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGAN 119
C + P L+ +Y L +D D + + ++A PT + ++GQ VD G
Sbjct: 41 CLQLTPVLESLAAQYHGQFILAKLDCDAEQXIAAQFGLRAIPTVYLFQNGQPVDGFQG-- 98
Query: 120 KPELQKKVAAAVDSVVPSQK 139
P+ ++ + A +D V+P ++
Sbjct: 99 -PQPEEAIRALLDKVLPREE 117
>pdb|3QOU|A Chain A, Crystal Structure Of E. Coli Ybbn
Length = 287
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 39/80 (48%), Gaps = 4/80 (5%)
Query: 61 CRMIAPFFSELSEKYPSLMFLL-VDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGAN 119
C + P L+ +Y L +D D + + ++A PT + ++GQ VD G
Sbjct: 41 CLQLTPILESLAAQYNGQFILAKLDCDAEQMIAAQFGLRAIPTVYLFQNGQPVDGFQG-- 98
Query: 120 KPELQKKVAAAVDSVVPSQK 139
P+ ++ + A +D V+P ++
Sbjct: 99 -PQPEEAIRALLDXVLPREE 117
>pdb|3VFI|A Chain A, Crystal Structure Of A Metagenomic Thioredoxin
Length = 104
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Query: 49 VIANFSATWCGPCRMIAPFFSEL-SEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLK 107
+I F+ +WC PC+ + P F E+ S+ + F +D ++ + +I+ P+
Sbjct: 20 IIIMFTGSWCQPCKKMKPTFEEMASQMEGDIRFAYMDAEDAEKTMAELNIRTLPSLALFV 79
Query: 108 DGQQVDKLVGA-NKPELQ 124
DG + G NK +L+
Sbjct: 80 DGMIREVFSGTMNKSDLR 97
>pdb|2LS5|A Chain A, Solution Structure Of A Putative Protein Disulfide
Isomerase From Bacteroides Thetaiotaomicron
Length = 159
Score = 37.0 bits (84), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 23/34 (67%)
Query: 37 QKMSEASKEGKIVIANFSATWCGPCRMIAPFFSE 70
++++ +S GK+V+ F+A+WCG CR PF +
Sbjct: 24 KQVTLSSLRGKVVMLQFTASWCGVCRKEMPFIEK 57
>pdb|3S9F|A Chain A, The Structure Of Tryparedoxin I From Leishmania Major
Length = 165
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 18/33 (54%)
Query: 43 SKEGKIVIANFSATWCGPCRMIAPFFSELSEKY 75
S GK V FSA+WC PCR P E EK+
Sbjct: 45 SLSGKTVFFYFSASWCPPCRGFTPQLVEFYEKH 77
>pdb|1EWX|A Chain A, Crystal Structure Of Native Tryparedoxin I From
Crithidia Fasciculata
Length = 146
Score = 36.6 bits (83), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 22/40 (55%)
Query: 36 DQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKY 75
D ++ S GK+V FSA+WC PCR P E +K+
Sbjct: 18 DGEVEVKSLAGKLVFFYFSASWCPPCRGFTPQLIEFYDKF 57
>pdb|1EZK|A Chain A, Crystal Structure Of Recombinant Tryparedoxin I
Length = 153
Score = 36.6 bits (83), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 22/40 (55%)
Query: 36 DQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKY 75
D ++ S GK+V FSA+WC PCR P E +K+
Sbjct: 17 DGEVEVKSLAGKLVFFYFSASWCPPCRGFTPQLIEFYDKF 56
>pdb|1QK8|A Chain A, Tryparedoxin-I From Crithidia Fasciculata
pdb|1O7U|A Chain A, Radiation Induced Tryparedoxin-I
pdb|1O85|A Chain A, Radiation-Reduced Tryparedoxin-I
pdb|1O8W|A Chain A, Radiation-Reduced Tryparedoxin-I
Length = 146
Score = 36.6 bits (83), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 22/40 (55%)
Query: 36 DQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKY 75
D ++ S GK+V FSA+WC PCR P E +K+
Sbjct: 18 DGEVEVKSLAGKLVFFYFSASWCPPCRGFTPQLIEFYDKF 57
>pdb|1OKD|A Chain A, Nmr-Structure Of Tryparedoxin 1
Length = 154
Score = 36.6 bits (83), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 22/40 (55%)
Query: 36 DQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKY 75
D ++ S GK+V FSA+WC PCR P E +K+
Sbjct: 18 DGEVEVKSLAGKLVFFYFSASWCPPCRGFTPQLIEFYDKF 57
>pdb|3KCM|A Chain A, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
pdb|3KCM|B Chain B, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
pdb|3KCM|C Chain C, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
pdb|3KCM|D Chain D, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
pdb|3KCM|E Chain E, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
pdb|3KCM|F Chain F, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
Length = 154
Score = 36.2 bits (82), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 45 EGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMF--LLVDVDE 87
+G++VI NF ATWC PCR P L+ F L V +DE
Sbjct: 27 KGQVVIVNFWATWCPPCREEIPSXXRLNAAXAGKPFRXLCVSIDE 71
>pdb|3UEM|A Chain A, Crystal Structure Of Human Pdi Bb'a' Domains
Length = 361
Score = 36.2 bits (82), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 19/34 (55%)
Query: 42 ASKEGKIVIANFSATWCGPCRMIAPFFSELSEKY 75
A E K V F A WCG C+ +AP + +L E Y
Sbjct: 263 AFDEKKNVFVEFYAPWCGHCKQLAPIWDKLGETY 296
>pdb|1JFU|A Chain A, Crystal Structure Of The Soluble Domain Of Tlpa From
Bradyrhizobium Japonicum
pdb|1JFU|B Chain B, Crystal Structure Of The Soluble Domain Of Tlpa From
Bradyrhizobium Japonicum
Length = 186
Score = 35.8 bits (81), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 45 EGKIVIANFSATWCGPCRMIAPFFSELSEKY--PSLMFLLVDVD 86
GK ++ N ATWC PCR P EL K P+ + +++D
Sbjct: 59 RGKTLLVNLWATWCVPCRKEMPALDELQGKLSGPNFEVVAINID 102
>pdb|1X5C|A Chain A, The Solution Structure Of The Second Thioredoxin-Like
Domain Of Human Protein Disulfide-Isomerase
Length = 121
Score = 35.8 bits (81), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 19/34 (55%)
Query: 42 ASKEGKIVIANFSATWCGPCRMIAPFFSELSEKY 75
A E K V F A WCG C+ +AP + +L E Y
Sbjct: 21 AFDEKKNVFVEFYAPWCGHCKQLAPIWDKLGETY 54
>pdb|3EMX|A Chain A, Crystal Structure Of Thioredoxin From Aeropyrum Pernix
pdb|3EMX|B Chain B, Crystal Structure Of Thioredoxin From Aeropyrum Pernix
Length = 135
Score = 35.8 bits (81), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 11/84 (13%)
Query: 45 EGKIVIANFSATWCGPCRMIAPFFSELSEKY--PSLMFL---LVDVDEL----VEFSTSW 95
+G ++A +S T C C P + S++ P +MF+ L+ EL +E + +
Sbjct: 31 QGDAILAVYSKT-CPHCHRDWPQLIQASKEVDVPIVMFIWGSLIGERELSAARLEMNKA- 88
Query: 96 DIKATPTFFFLKDGQQVDKLVGAN 119
++ TPT F K+G+ VDKLVGA
Sbjct: 89 GVEGTPTLVFYKEGRIVDKLVGAT 112
>pdb|1X5E|A Chain A, The Solution Structure Of The Thioredoxin-Like Domain Of
Human Thioredoxin-Related Transmembrane Protein
Length = 126
Score = 35.8 bits (81), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 9/91 (9%)
Query: 22 AGGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFL 81
+ GNV ++T ++ W + + EG +I F A WC C+ + P + +E L
Sbjct: 5 SSGNVRVITDEN-WRELL-----EGDWMI-EFYAPWCPACQNLQPEWESFAEWGEDLEVN 57
Query: 82 L--VDVDELVEFSTSWDIKATPTFFFLKDGQ 110
+ VDV E S + I A PT + KDG+
Sbjct: 58 IAKVDVTEQPGLSGRFIINALPTIYHCKDGE 88
>pdb|2B5E|A Chain A, Crystal Structure Of Yeast Protein Disulfide Isomerase
pdb|3BOA|A Chain A, Crystal Structure Of Yeast Protein Disulfide Isomerase
Length = 504
Score = 35.4 bits (80), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Query: 47 KIVIANFSATWCGPCRMIAPFFSELSEKYPSLM--FLLVDVDELVEFSTSWDIKATPTFF 104
K V+ + A WCG C+ +AP + EL++ Y + L+ +D I+ PT
Sbjct: 377 KDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKLDHTENDVRGVVIEGYPTIV 436
Query: 105 FLKDGQQVDKLV 116
G++ + +V
Sbjct: 437 LYPGGKKSESVV 448
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 24/48 (50%)
Query: 39 MSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVD 86
+E + +V+A F A WCG C+ +AP + + +E L +D
Sbjct: 24 FNEYIQSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKNITLAQID 71
>pdb|3KH7|A Chain A, Crystal Structure Of The Periplasmic Soluble Domain Of
Reduced Ccmg From Pseudomonas Aeruginosa
pdb|3KH9|A Chain A, Crystal Structure Of The Periplasmic Soluble Domain Of
Oxidized Ccmg From Pseudomonas Aeruginosa
Length = 176
Score = 35.0 bits (79), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 23/38 (60%)
Query: 37 QKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEK 74
++++EA +GK + N TWC CR+ P + L+E+
Sbjct: 49 RRLTEADLKGKPALVNVWGTWCPSCRVEHPELTRLAEQ 86
>pdb|1O81|A Chain A, Tryparedoxin Ii From C.fasciculata Solved By Sulphur
Phasing
pdb|1O81|B Chain B, Tryparedoxin Ii From C.fasciculata Solved By Sulphur
Phasing
pdb|1OC9|B Chain B, Tryparedoxin Ii From C.Fasciculata Solved By Mr
pdb|1OC8|A Chain A, Tryparedoxin Ii From C.Fasciculata Solved By Mr
pdb|1OC8|B Chain B, Tryparedoxin Ii From C.Fasciculata Solved By Mr
Length = 152
Score = 34.7 bits (78), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
Query: 43 SKEGKIVIANFSATWCGPCRMIAP----FFSELSEKYPSLMFLLVDVDELVE 90
S GK V FSA+WC PCR P F+ +EK + +L+ DE E
Sbjct: 28 SLAGKTVFFYFSASWCPPCRAFTPQLIDFYKAHAEK-KNFEVMLISWDESAE 78
>pdb|3HA9|A Chain A, The 1.7a Crystal Structure Of A Thioredoxin-like Protein
From Aeropyrum Pernix
Length = 165
Score = 34.7 bits (78), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 8/75 (10%)
Query: 10 HDEEDGEHPVEFAGGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFS 69
H EE E F+ +TT D + +S + G +VI F A WC C +A
Sbjct: 9 HSEEVLEREASFS------LTTID--GEVISLNNVGGDVVILWFMAAWCPSCVYMADLLD 60
Query: 70 ELSEKYPSLMFLLVD 84
L+EKY + + +D
Sbjct: 61 RLTEKYREISVIAID 75
>pdb|1FG4|A Chain A, Structure Of Tryparedoxin Ii
pdb|1FG4|B Chain B, Structure Of Tryparedoxin Ii
Length = 149
Score = 34.7 bits (78), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
Query: 43 SKEGKIVIANFSATWCGPCRMIAP----FFSELSEKYPSLMFLLVDVDELVE 90
S GK V FSA+WC PCR P F+ +EK + +L+ DE E
Sbjct: 25 SLAGKTVFFYFSASWCPPCRAFTPQLIDFYKAHAEK-KNFEVMLISWDESAE 75
>pdb|1O6J|A Chain A, Tryparedoxin Ii From C.Fasciculata Solved By Sulphur
Phasing
pdb|1O6J|B Chain B, Tryparedoxin Ii From C.Fasciculata Solved By Sulphur
Phasing
Length = 150
Score = 34.7 bits (78), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
Query: 43 SKEGKIVIANFSATWCGPCRMIAP----FFSELSEKYPSLMFLLVDVDELVE 90
S GK V FSA+WC PCR P F+ +EK + +L+ DE E
Sbjct: 26 SLAGKTVFFYFSASWCPPCRAFTPQLIDFYKAHAEK-KNFEVMLISWDESAE 76
>pdb|2DJJ|A Chain A, Solution Structure Of The A' Domain Of Thermophilic
Fungal Protein Disulfide Isomerase
pdb|2KP1|A Chain A, Solution Structure Of The A' Domain Of Thermophilic
Fungal Protein Disulfide Isomerase
Length = 121
Score = 34.7 bits (78), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 31/52 (59%), Gaps = 4/52 (7%)
Query: 24 GNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKY 75
G V++V K+ +++ + + +K+ V+ F A WCG C+ +AP + EL Y
Sbjct: 7 GPVTVVVAKN-YNEIVLDDTKD---VLIEFYAPWCGHCKALAPKYEELGALY 54
>pdb|2LST|A Chain A, Solution Structure Of A Thioredoxin From Thermus
Thermophilus
Length = 130
Score = 34.3 bits (77), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 44/95 (46%), Gaps = 10/95 (10%)
Query: 35 WDQKMSEASKEGKIVIANFSATWCGPCRMIAPFF------SELSEKYPSLMFLLVDVDEL 88
+ + ++ A G++V+ F + C C+ + F S L E + + VD E
Sbjct: 8 YPEALALAQAHGRMVMVYFHSEHCPYCQQMNTFVLSDPGVSRLLEARFVVASVSVDTPEG 67
Query: 89 VEFSTSWDIKATPTFFFL--KDG--QQVDKLVGAN 119
E + + + TPTF FL K G ++V +L G+
Sbjct: 68 QELARRYRVPGTPTFVFLVPKAGAWEEVGRLFGSR 102
>pdb|1OC9|A Chain A, Tryparedoxin Ii From C.Fasciculata Solved By Mr
Length = 152
Score = 33.1 bits (74), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 14/24 (58%)
Query: 43 SKEGKIVIANFSATWCGPCRMIAP 66
S GK V FSA+WC PCR P
Sbjct: 28 SLAGKTVFFYFSASWCPPCRAFTP 51
>pdb|3APS|A Chain A, Crystal Structure Of Trx4 Domain Of Erdj5
pdb|3APS|B Chain B, Crystal Structure Of Trx4 Domain Of Erdj5
Length = 122
Score = 33.1 bits (74), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 33 DIWDQKMSEASKEGKIV-IANFSATWCGPCRMIAPFFSELSE 73
D+ Q +E +GK + +F A WCGPC+ AP F L+
Sbjct: 7 DLTPQTFNEKVLQGKTHWVVDFYAPWCGPCQNFAPEFELLAR 48
>pdb|1O8X|A Chain A, Mutant Tryparedoxin-I Cys43ala
Length = 146
Score = 33.1 bits (74), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 21/40 (52%)
Query: 36 DQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKY 75
D ++ S GK+V FSA+WC P R P E +K+
Sbjct: 18 DGEVEVKSLAGKLVFFYFSASWCPPARGFTPQLIEFYDKF 57
>pdb|2LUS|A Chain A, Nmr Structure Of Carcinoscorpius Rotundicauda
Thioredoxin Related Protein 16 And Its Role In
Regulating Transcription Factor Nf-Kb Activity
Length = 143
Score = 32.7 bits (73), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 40 SEASKEGKIVIANFSATWCGPCRMIAPFFSEL 71
+EA K+ I+ FSA WC PCR P +++
Sbjct: 20 NEALKDKDIIGFYFSAHWCPPCRGFTPILADM 51
>pdb|3ERW|A Chain A, Crystal Structure Of Stoa From Bacillus Subtilis
pdb|3ERW|B Chain B, Crystal Structure Of Stoa From Bacillus Subtilis
pdb|3ERW|C Chain C, Crystal Structure Of Stoa From Bacillus Subtilis
pdb|3ERW|D Chain D, Crystal Structure Of Stoa From Bacillus Subtilis
pdb|3ERW|E Chain E, Crystal Structure Of Stoa From Bacillus Subtilis
pdb|3ERW|F Chain F, Crystal Structure Of Stoa From Bacillus Subtilis
pdb|3ERW|G Chain G, Crystal Structure Of Stoa From Bacillus Subtilis
Length = 145
Score = 32.3 bits (72), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 45 EGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVD 86
+G+ I +F +WC PC+ P F + +PS LV V+
Sbjct: 33 KGQKTILHFWTSWCPPCKKELPQFQSFYDAHPSDSVKLVTVN 74
>pdb|2H1B|A Chain A, Resa E80q
pdb|2H1B|B Chain B, Resa E80q
pdb|2H1B|C Chain C, Resa E80q
pdb|2H1B|D Chain D, Resa E80q
Length = 143
Score = 32.0 bits (71), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 28/55 (50%)
Query: 32 KDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVD 86
+D +++ + +GK V NF TWC PC+ P+ + + + S +V V+
Sbjct: 12 EDTNGKRIELSDLKGKGVFLNFWGTWCEPCKKQFPYMANQYKHFKSQGVEIVAVN 66
>pdb|3RAZ|A Chain A, The Crystal Structure Of Thioredoxin-Related Protein
From Neisseria Meningitidis Serogroup B
Length = 151
Score = 31.6 bits (70), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 48 IVIANFSATWCGPCRMIAPFFSE 70
+ I N ATWCGPCR P S+
Sbjct: 26 VRIVNLWATWCGPCRKEXPAXSK 48
>pdb|1ST9|A Chain A, Crystal Structure Of A Soluble Domain Of Resa In The
Oxidised Form
pdb|1ST9|B Chain B, Crystal Structure Of A Soluble Domain Of Resa In The
Oxidised Form
pdb|1SU9|A Chain A, Reduced Structure Of The Soluble Domain Of Resa
pdb|1SU9|B Chain B, Reduced Structure Of The Soluble Domain Of Resa
pdb|2H1D|A Chain A, Resa Ph 9.25
pdb|2H1D|B Chain B, Resa Ph 9.25
Length = 143
Score = 31.6 bits (70), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 28/55 (50%)
Query: 32 KDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVD 86
+D +++ + +GK V NF TWC PC+ P+ + + + S +V V+
Sbjct: 12 EDTNGKRIELSDLKGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQGVEIVAVN 66
>pdb|2F9S|A Chain A, 2nd Crystal Structure Of A Soluble Domain Of Resa In The
Oxidised Form
pdb|2F9S|B Chain B, 2nd Crystal Structure Of A Soluble Domain Of Resa In The
Oxidised Form
Length = 151
Score = 31.2 bits (69), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 30/64 (46%)
Query: 23 GGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLL 82
G + +D +++ + +GK V NF TWC PC+ P+ + + + S +
Sbjct: 3 GSDAPNFVLEDTNGKRIELSDLKGKGVFLNFWGTWCEPCKKEFPYXANQYKHFKSQGVEI 62
Query: 83 VDVD 86
V V+
Sbjct: 63 VAVN 66
>pdb|1I5G|A Chain A, Tryparedoxin Ii Complexed With Glutathionylspermidine
Length = 144
Score = 30.8 bits (68), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
Query: 43 SKEGKIVIANFSATWCGPCRMIAP----FFSELSEKYPSLMFLLVDVDELVE 90
S GK V FSA+WC P R P F+ +EK + +L+ DE E
Sbjct: 25 SLAGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEK-KNFEVMLISWDESAE 75
>pdb|2DBC|A Chain A, Solution Structure Of The Thioredoxin-Like Domain Of
Phosducin-Like Protein 2(Pdcl2)
Length = 135
Score = 30.8 bits (68), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Query: 61 CRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVG 117
C ++ S L+ K+P F+ V+ +E + PT F K+GQ K +G
Sbjct: 45 CLVVNQHLSVLARKFPETKFVKAIVNSCIE---HYHDNCLPTIFVYKNGQIEGKFIG 98
>pdb|2G0F|A Chain A, Crystal Structure Of P144a Mutant Of E.Coli Ccmg Protein
Length = 168
Score = 30.4 bits (67), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 45 EGKIVIANFSATWCGPCRMIAPFFSELSEK 74
+GK V+ N ATWC CR + ++LS +
Sbjct: 50 QGKPVLLNVWATWCPTCRAEHQYLNQLSAQ 79
>pdb|2B1L|A Chain A, Crystal Structure Of N-Terminal 57 Residue Deletion
Mutant Of E. Coli Ccmg Protein(Residues 58-185)
pdb|2B1L|B Chain B, Crystal Structure Of N-Terminal 57 Residue Deletion
Mutant Of E. Coli Ccmg Protein(Residues 58-185)
Length = 129
Score = 30.4 bits (67), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 45 EGKIVIANFSATWCGPCRMIAPFFSELSEK 74
+GK V+ N ATWC CR + ++LS +
Sbjct: 11 QGKPVLLNVWATWCPTCRAEHQYLNQLSAQ 40
>pdb|2B1K|A Chain A, Crystal Structure Of E. Coli Ccmg Protein
Length = 168
Score = 30.4 bits (67), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 45 EGKIVIANFSATWCGPCRMIAPFFSELSEK 74
+GK V+ N ATWC CR + ++LS +
Sbjct: 50 QGKPVLLNVWATWCPTCRAEHQYLNQLSAQ 79
>pdb|1LU4|A Chain A, 1.1 Angstrom Resolution Crystal Structure Of A Secreted
Mycobacterium Tuberculosis Disulfide Oxidoreductase
Homologous To E. Coli Dsbe: Implications For Functions
Length = 136
Score = 30.0 bits (66), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Query: 42 ASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLV----DVDELVEFSTSWDI 97
AS +GK + F WC C AP S+++ P++ F+ + DV + F + +++
Sbjct: 20 ASLQGKPAVLWFWTPWCPFCNAEAPSLSQVAAANPAVTFVGIATRADVGAMQSFVSKYNL 79
Query: 98 KAT 100
T
Sbjct: 80 NFT 82
>pdb|3K8N|A Chain A, Crystal Structure Of E. Coli Ccmg
Length = 185
Score = 30.0 bits (66), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 45 EGKIVIANFSATWCGPCRMIAPFFSELSEK 74
+GK V+ N ATWC CR + ++LS +
Sbjct: 67 QGKPVLLNVWATWCPTCRAEHQYLNQLSAQ 96
>pdb|2L6C|A Chain A, Solution Structure Of Desulfothioredoxin From
Desulfovibrio Vulgaris Hildenborough In Its Oxidized
Form
pdb|2L6D|A Chain A, Solution Structure Of Desulfothioredoxin From
Desulfovibrio Vulgaris Hildenborough In Its Reduced Form
Length = 110
Score = 30.0 bits (66), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 30/81 (37%), Gaps = 1/81 (1%)
Query: 50 IANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDG 109
I F C C+ + + + P + VD + E + PT F++DG
Sbjct: 23 IVFFHKNLCPHCKNMEKVLDKFGARAPQVAISSVDSEARPELMKELGFERVPTLVFIRDG 82
Query: 110 QQVDKLVGANKP-ELQKKVAA 129
+ G P ELQ A+
Sbjct: 83 KVAKVFSGIMNPRELQALYAS 103
>pdb|3Q6O|A Chain A, Oxidoreductase Fragment Of Human Qsox1
Length = 244
Score = 29.6 bits (65), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 11/92 (11%)
Query: 53 FSATWCGPCRMIAPFFSELSEKY----PSLMFLLVDVDELVEFSTSWD--IKATPT--FF 104
F A+WCG C AP + L+E P+L +D E + D I PT FF
Sbjct: 37 FFASWCGHCIAFAPTWXALAEDVKAWRPALYLAALDCAEETNSAVCRDFNIPGFPTVRFF 96
Query: 105 --FLKDGQ-QVDKLVGANKPELQKKVAAAVDS 133
F +G V + GA+ L++++ A++S
Sbjct: 97 XAFTXNGSGAVFPVAGADVQTLRERLIDALES 128
>pdb|1SEN|A Chain A, Endoplasmic Reticulum Protein Rp19 O95881
Length = 164
Score = 29.6 bits (65), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 41 EASKEGKIVIANFSATWCGPCRMIAPFFSELSE 73
EA+ G ++ +WCG C+ + P F+E +E
Sbjct: 41 EAAASGLPLMVIIHKSWCGACKALKPKFAESTE 73
>pdb|2K8V|A Chain A, Solution Structure Of Oxidised Erp18
Length = 157
Score = 29.3 bits (64), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 41 EASKEGKIVIANFSATWCGPCRMIAPFFSELSE 73
EA+ G ++ +WCG C+ + P F+E +E
Sbjct: 34 EAAASGLPLMVIIHKSWCGACKALKPKFAESTE 66
>pdb|1Z7P|A Chain A, Solution Structure Of Reduced Glutaredoxin C1 From Populus
Tremula X Tremuloides
pdb|1Z7R|A Chain A, Solution Structure Of Reduced Glutaredoxin C1 From Populus
Tremula X Tremuloides
Length = 117
Score = 29.3 bits (64), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 16/87 (18%)
Query: 33 DIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFS 92
D +K E + +V+ FS T+CG C + +++ Y +V++DEL + S
Sbjct: 8 DAALKKAKELASSAPVVV--FSKTYCGYCNRVKQLLTQVGASYK-----VVELDELSDGS 60
Query: 93 ------TSWDIKAT-PTFFFLKDGQQV 112
W + T P F G+Q+
Sbjct: 61 QLQSALAHWTGRGTVPNVFI--GGKQI 85
>pdb|2E7P|A Chain A, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From
Populus Tremula X Tremuloides
pdb|2E7P|B Chain B, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From
Populus Tremula X Tremuloides
pdb|2E7P|C Chain C, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From
Populus Tremula X Tremuloides
pdb|2E7P|D Chain D, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From
Populus Tremula X Tremuloides
Length = 116
Score = 29.3 bits (64), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 16/83 (19%)
Query: 37 QKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFS---- 92
+K E + +V+ FS T+CG C + +++ Y +V++DEL + S
Sbjct: 11 KKAKELASSAPVVV--FSKTYCGYCNRVKQLLTQVGASYK-----VVELDELSDGSQLQS 63
Query: 93 --TSWDIKAT-PTFFFLKDGQQV 112
W + T P F G+Q+
Sbjct: 64 ALAHWTGRGTVPNVFI--GGKQI 84
>pdb|3C71|A Chain A, Struture Of A Resa Variant With A Dsba-Like Active Site
Motif (Cphc)
Length = 143
Score = 28.1 bits (61), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 27/55 (49%)
Query: 32 KDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVD 86
+D +++ + +GK V NF TWC C+ P+ + + + S +V V+
Sbjct: 12 EDTNGKRIELSDLKGKGVFLNFWGTWCPHCKKEFPYMANQYKHFKSQGVEIVAVN 66
>pdb|3C73|A Chain A, Structure Of Cehc Variant Resa
pdb|3C73|B Chain B, Structure Of Cehc Variant Resa
Length = 140
Score = 28.1 bits (61), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 27/55 (49%)
Query: 32 KDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVD 86
+D +++ + +GK V NF TWC C+ P+ + + + S +V V+
Sbjct: 9 EDTNGKRIELSDLKGKGVFLNFWGTWCEHCKKEFPYMANQYKHFKSQGVEIVAVN 63
>pdb|2H19|A Chain A, Crystal Structure Of Resa Cys77ala Variant
pdb|2H19|B Chain B, Crystal Structure Of Resa Cys77ala Variant
Length = 143
Score = 28.1 bits (61), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 27/55 (49%)
Query: 32 KDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVD 86
+D +++ + +GK V NF TWC P + P+ + + + S +V V+
Sbjct: 12 EDTNGKRIELSDLKGKGVFLNFWGTWCEPAKKEFPYMANQYKHFKSQGVEIVAVN 66
>pdb|2H1A|A Chain A, Resa C74a Variant
pdb|2H1A|B Chain B, Resa C74a Variant
Length = 143
Score = 28.1 bits (61), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 27/55 (49%)
Query: 32 KDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVD 86
+D +++ + +GK V NF TW PC+ P+ + + + S +V V+
Sbjct: 12 EDTNGKRIELSDLKGKGVFLNFWGTWAEPCKKEFPYMANQYKHFKSQGVEIVAVN 66
>pdb|2DML|A Chain A, The Solution Structure Of The First Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A6
Length = 130
Score = 27.7 bits (60), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/72 (22%), Positives = 31/72 (43%), Gaps = 11/72 (15%)
Query: 50 IANFSATWCGPCRMIAPFFSELSEKYPSLMFL-LVDVDELVEFSTSWDIKATPTFFFLKD 108
+ F A WCG C+ + P + + + ++ + V+ D+ + ++ PT
Sbjct: 39 LVEFYAPWCGHCQRLTPEWKKAATALKDVVKVGAVNADKHQSLGGQYGVQGFPTI----- 93
Query: 109 GQQVDKLVGANK 120
K+ GANK
Sbjct: 94 -----KIFGANK 100
>pdb|3T58|A Chain A, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T58|B Chain B, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T58|C Chain C, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T58|D Chain D, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T59|A Chain A, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T59|B Chain B, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T59|C Chain C, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T59|D Chain D, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
Length = 519
Score = 27.7 bits (60), Expect = 2.3, Method: Composition-based stats.
Identities = 27/92 (29%), Positives = 42/92 (45%), Gaps = 11/92 (11%)
Query: 53 FSATWCGPCRMIAPFFSELSEKY----PSLMFLLVDVDELVEFST--SWDIKATPT--FF 104
F A+WCG AP + EL+ P+L ++D E + ++I PT FF
Sbjct: 37 FFASWCGHAIAFAPTWKELANDVKDWRPALNLAVLDCAEETNSAVCREFNIAGFPTVRFF 96
Query: 105 --FLKDGQQVD-KLVGANKPELQKKVAAAVDS 133
F K+G GAN L+ ++ A++S
Sbjct: 97 QAFTKNGSGATLPGAGANVQTLRMRLIDALES 128
>pdb|3LWA|A Chain A, The Crystal Structure Of A Secreted Thiol-Disulfide
Isomerase From Corynebacterium Glutamicum To 1.75a
Length = 183
Score = 27.7 bits (60), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 45 EGKIVIANFSATWCGPCR 62
E ++VI N WC PCR
Sbjct: 58 ENQVVILNAWGQWCAPCR 75
>pdb|3GIX|A Chain A, Crystal Structure Of Human Splicing Factor Dim2
pdb|3GIX|B Chain B, Crystal Structure Of Human Splicing Factor Dim2
Length = 149
Score = 27.3 bits (59), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 38/85 (44%), Gaps = 3/85 (3%)
Query: 29 VTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLM-FLLVDVDE 87
+T+K DQ + ++ K+++ F C + S+ S + LVDVD+
Sbjct: 8 LTSKKEVDQAIKSTAE--KVLVLRFGRDEDPVCLQLDDILSKTSSDLSKMAAIYLVDVDQ 65
Query: 88 LVEFSTSWDIKATPTFFFLKDGQQV 112
++ +DI P+ F +GQ +
Sbjct: 66 TAVYTQYFDISYIPSTVFFFNGQHM 90
>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5
pdb|3APQ|B Chain B, Crystal Structure Of J-Trx1 Fragment Of Erdj5
Length = 210
Score = 27.3 bits (59), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/87 (19%), Positives = 35/87 (40%), Gaps = 1/87 (1%)
Query: 37 QKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFL-LVDVDELVEFSTSW 95
++ A G++ NF + C C +AP + E +++ L+ + V+ +
Sbjct: 105 REFDAAVNSGELWFVNFYSPGCSHCHDLAPTWREFAKEVDGLLRIGAVNCGDDRMLCRMK 164
Query: 96 DIKATPTFFFLKDGQQVDKLVGANKPE 122
+ + P+ F + G K G E
Sbjct: 165 GVNSYPSLFIFRSGMAAVKYNGDRSKE 191
>pdb|1XBS|A Chain A, Crystal Structure Of Human Dim2: A Dim1-Like Protein
Length = 149
Score = 26.9 bits (58), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 38/85 (44%), Gaps = 3/85 (3%)
Query: 29 VTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLM-FLLVDVDE 87
+T+K DQ + ++ K+++ F C + S+ S + LVDVD+
Sbjct: 8 LTSKKEVDQAIKSTAE--KVLVLRFGRDEDPVCLQLDDILSKTSSDLSKMAAIYLVDVDQ 65
Query: 88 LVEFSTSWDIKATPTFFFLKDGQQV 112
++ +DI P+ F +GQ +
Sbjct: 66 TAVYTQYFDISYIPSTVFFFNGQHM 90
>pdb|4B9G|A Chain A, Structure Of Cssb Subunit Complemented With Donor Strand
From Cssa Subunit Of Enterotoxigenic Escherichia Coli
Colonization Factor Cs6
pdb|4B9G|B Chain B, Structure Of Cssb Subunit Complemented With Donor Strand
From Cssa Subunit Of Enterotoxigenic Escherichia Coli
Colonization Factor Cs6
Length = 161
Score = 26.9 bits (58), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 97 IKATPTFFFLKDGQQVDKLVGANKPE 122
+K PT GQQ+ KLV N P+
Sbjct: 52 VKIVPTDSLTSSGQQIGKLVNVNNPD 77
>pdb|1X5D|A Chain A, The Solution Structure Of The Second Thioredoxin-Like
Domain Of Human Protein Disulfide-Isomerase A6
Length = 133
Score = 26.6 bits (57), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 7/67 (10%)
Query: 50 IANFSATWCGPCRMIAPFF----SELSEKYPSLMFLLVDVDELVE--FSTSWDIKATPTF 103
+ F A WCG C+ + P + SE+ E+ + L VD V ++ + I+ PT
Sbjct: 29 MVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAA-VDATVNQVLASRYGIRGFPTI 87
Query: 104 FFLKDGQ 110
+ G+
Sbjct: 88 KIFQKGE 94
>pdb|3SZP|A Chain A, Full-Length Structure Of The Vibrio Cholerae Virulence
Activator, Aphb, A Member Of The Lttr Protein Family
pdb|3SZP|B Chain B, Full-Length Structure Of The Vibrio Cholerae Virulence
Activator, Aphb, A Member Of The Lttr Protein Family
Length = 291
Score = 26.2 bits (56), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 62 RMIAPFFSELSEKYPSLMFLLVDVDELVEFS-TSWDI 97
RM+ P F+ EKYP + L+ ++ + T WD+
Sbjct: 104 RMMMPMFNAFMEKYPDIHIELMMSNQADDLDPTEWDV 140
>pdb|3T1B|B Chain B, Crystal Structure Of The Full-Length Aphb N100e Variant
pdb|3T1B|C Chain C, Crystal Structure Of The Full-Length Aphb N100e Variant
pdb|3T1B|A Chain A, Crystal Structure Of The Full-Length Aphb N100e Variant
pdb|3T1B|D Chain D, Crystal Structure Of The Full-Length Aphb N100e Variant
Length = 291
Score = 26.2 bits (56), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 62 RMIAPFFSELSEKYPSLMFLLVDVDELVEFS-TSWDI 97
RM+ P F+ EKYP + L+ ++ + T WD+
Sbjct: 104 RMMMPMFNAFMEKYPDIHIELMMSNQADDLDPTEWDV 140
>pdb|3ED3|A Chain A, Crystal Structure Of The Yeast DithiolDISULFIDE
Oxidoreductase Mpd1p
pdb|3ED3|B Chain B, Crystal Structure Of The Yeast DithiolDISULFIDE
Oxidoreductase Mpd1p
Length = 298
Score = 26.2 bits (56), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 11/61 (18%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 50 IANFSATWCGPCRMIAPFFSELSEKYPSLMFLLV---DVDELVEFSTSWDIKATPTFFFL 106
+ F A WCG C+ ++ F + +++ ++ + D+++ +D+ PT
Sbjct: 39 LVEFYAPWCGHCKKLSSTFRKAAKRLDGVVQVAAVNCDLNKNKALCAKYDVNGFPTLMVF 98
Query: 107 K 107
+
Sbjct: 99 R 99
>pdb|2DX5|A Chain A, The Complex Structure Between The Mouse Eap45-Glue
Domain And Ubiquitin
Length = 139
Score = 26.2 bits (56), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 14 DGEHPVEFAGGNVSLVTTKDIW-DQKMSE 41
DGE ++F G + L T + IW DQK +E
Sbjct: 28 DGEEKIKFDAGTLLLSTHRLIWRDQKNNE 56
>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5
Length = 780
Score = 25.8 bits (55), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 33 DIWDQKMSEASKEGKIV-IANFSATWCGPCRMIAPFFSELSE 73
D+ Q +E +GK + +F A W GP + AP F L+
Sbjct: 661 DLTPQTFNEKVLQGKTHWVVDFYAPWSGPSQNFAPEFELLAR 702
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,146,171
Number of Sequences: 62578
Number of extensions: 151171
Number of successful extensions: 606
Number of sequences better than 100.0: 198
Number of HSP's better than 100.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 353
Number of HSP's gapped (non-prelim): 202
length of query: 139
length of database: 14,973,337
effective HSP length: 89
effective length of query: 50
effective length of database: 9,403,895
effective search space: 470194750
effective search space used: 470194750
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 46 (22.3 bits)