Query 032496
Match_columns 139
No_of_seqs 139 out of 1769
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 14:50:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032496.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032496hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0910 Thioredoxin-like prote 99.9 3.4E-26 7.4E-31 142.8 11.5 106 24-132 42-149 (150)
2 KOG0907 Thioredoxin [Posttrans 99.9 1.6E-24 3.5E-29 130.4 13.1 101 30-130 5-105 (106)
3 cd02985 TRX_CDSP32 TRX family, 99.9 5.1E-24 1.1E-28 128.6 13.4 97 31-129 2-101 (103)
4 cd02954 DIM1 Dim1 family; Dim1 99.9 3E-24 6.5E-29 130.3 10.6 85 32-118 2-87 (114)
5 cd02948 TRX_NDPK TRX domain, T 99.9 2.3E-23 4.9E-28 125.6 13.0 97 29-130 4-102 (102)
6 PHA02278 thioredoxin-like prot 99.9 1.7E-23 3.8E-28 125.8 12.4 92 31-126 3-100 (103)
7 PF00085 Thioredoxin: Thioredo 99.9 1.2E-22 2.5E-27 122.2 14.2 99 29-130 3-103 (103)
8 PLN00410 U5 snRNP protein, DIM 99.9 9.7E-23 2.1E-27 128.1 12.6 109 26-136 5-125 (142)
9 cd02989 Phd_like_TxnDC9 Phosdu 99.9 1E-22 2.3E-27 124.7 12.4 92 23-118 3-94 (113)
10 cd03006 PDI_a_EFP1_N PDIa fami 99.9 1.7E-22 3.6E-27 123.4 12.6 100 25-126 10-112 (113)
11 cd02956 ybbN ybbN protein fami 99.9 1.1E-22 2.4E-27 121.2 11.4 93 34-128 2-96 (96)
12 cd03065 PDI_b_Calsequestrin_N 99.9 1.8E-22 4E-27 124.1 12.6 98 30-131 14-119 (120)
13 cd02999 PDI_a_ERp44_like PDIa 99.9 5.1E-23 1.1E-27 123.5 9.8 83 44-127 16-100 (100)
14 cd02963 TRX_DnaJ TRX domain, D 99.9 1E-22 2.3E-27 124.4 11.2 99 31-130 10-111 (111)
15 PRK09381 trxA thioredoxin; Pro 99.9 6.9E-22 1.5E-26 120.4 13.7 103 25-131 4-108 (109)
16 PRK10996 thioredoxin 2; Provis 99.9 1.4E-21 2.9E-26 123.9 15.5 104 23-131 34-139 (139)
17 PTZ00051 thioredoxin; Provisio 99.9 5.6E-22 1.2E-26 118.5 12.9 95 26-124 2-96 (98)
18 cd03003 PDI_a_ERdj5_N PDIa fam 99.9 1.6E-22 3.5E-27 121.6 10.3 92 31-126 7-100 (101)
19 cd03004 PDI_a_ERdj5_C PDIa fam 99.9 3.5E-22 7.7E-27 120.7 11.2 94 31-127 7-104 (104)
20 cd02957 Phd_like Phosducin (Ph 99.9 4.5E-22 9.7E-27 122.0 11.7 93 23-118 3-95 (113)
21 COG3118 Thioredoxin domain-con 99.9 1.6E-22 3.5E-27 138.6 10.4 106 26-133 25-132 (304)
22 cd02984 TRX_PICOT TRX domain, 99.9 8.7E-22 1.9E-26 117.4 12.2 94 32-127 2-96 (97)
23 cd02986 DLP Dim1 family, Dim1- 99.9 2.3E-21 4.9E-26 116.9 12.6 97 32-130 2-110 (114)
24 cd02950 TxlA TRX-like protein 99.9 3.2E-21 7E-26 122.5 12.6 92 43-134 17-113 (142)
25 cd02965 HyaE HyaE family; HyaE 99.9 2.4E-21 5.3E-26 116.8 10.9 91 31-125 16-110 (111)
26 cd02987 Phd_like_Phd Phosducin 99.9 5.6E-21 1.2E-25 125.1 13.5 95 22-118 60-154 (175)
27 cd02996 PDI_a_ERp44 PDIa famil 99.9 3E-21 6.5E-26 117.4 11.2 93 31-127 7-108 (108)
28 PTZ00443 Thioredoxin domain-co 99.9 1.3E-20 2.8E-25 127.2 14.7 110 25-135 31-143 (224)
29 KOG0908 Thioredoxin-like prote 99.9 2.9E-21 6.3E-26 129.1 11.3 111 25-137 2-112 (288)
30 TIGR01068 thioredoxin thioredo 99.9 1.2E-20 2.6E-25 113.0 12.3 97 32-131 3-101 (101)
31 cd02994 PDI_a_TMX PDIa family, 99.9 1.2E-20 2.5E-25 113.5 11.6 96 26-129 3-101 (101)
32 cd03005 PDI_a_ERp46 PDIa famil 99.9 8.2E-21 1.8E-25 114.1 10.5 92 31-127 6-102 (102)
33 cd02949 TRX_NTR TRX domain, no 99.9 2.5E-20 5.5E-25 111.3 12.3 84 44-127 11-96 (97)
34 cd02975 PfPDO_like_N Pyrococcu 99.9 2.7E-20 5.9E-25 114.0 12.2 89 44-132 20-111 (113)
35 cd02962 TMX2 TMX2 family; comp 99.9 4E-20 8.7E-25 118.1 13.3 91 24-117 28-126 (152)
36 cd03002 PDI_a_MPD1_like PDI fa 99.9 1.9E-20 4.1E-25 113.9 11.1 94 31-127 6-108 (109)
37 TIGR01126 pdi_dom protein disu 99.8 4E-20 8.7E-25 111.0 10.6 95 32-130 3-101 (102)
38 cd02953 DsbDgamma DsbD gamma f 99.8 1.3E-20 2.9E-25 113.8 8.4 86 42-127 7-103 (104)
39 cd02997 PDI_a_PDIR PDIa family 99.8 6.3E-20 1.4E-24 110.6 11.3 93 31-127 6-104 (104)
40 cd02951 SoxW SoxW family; SoxW 99.8 9E-20 1.9E-24 113.6 11.3 97 37-133 4-121 (125)
41 cd03001 PDI_a_P5 PDIa family, 99.8 1.5E-19 3.3E-24 108.8 11.3 94 31-127 6-102 (103)
42 TIGR01295 PedC_BrcD bacterioci 99.8 2.2E-19 4.8E-24 111.2 12.0 93 31-128 12-121 (122)
43 cd03000 PDI_a_TMX3 PDIa family 99.8 1.1E-19 2.5E-24 109.7 10.2 86 44-130 13-103 (104)
44 cd02988 Phd_like_VIAF Phosduci 99.8 5.6E-19 1.2E-23 117.1 13.1 92 22-118 80-171 (192)
45 cd02947 TRX_family TRX family; 99.8 7E-19 1.5E-23 103.2 11.5 84 44-127 8-92 (93)
46 PTZ00062 glutaredoxin; Provisi 99.8 8.9E-19 1.9E-23 116.7 11.8 93 30-133 4-96 (204)
47 cd02995 PDI_a_PDI_a'_C PDIa fa 99.8 6.5E-19 1.4E-23 106.1 10.1 93 31-127 6-104 (104)
48 cd02961 PDI_a_family Protein D 99.8 8.3E-19 1.8E-23 104.6 9.6 92 32-127 5-101 (101)
49 cd02993 PDI_a_APS_reductase PD 99.8 1.4E-18 3.1E-23 105.8 10.6 96 31-127 7-109 (109)
50 cd02998 PDI_a_ERp38 PDIa famil 99.8 7.5E-19 1.6E-23 105.9 9.0 94 31-127 6-105 (105)
51 PRK14018 trifunctional thiored 99.8 6.5E-18 1.4E-22 125.7 10.5 104 24-129 36-171 (521)
52 PRK15412 thiol:disulfide inter 99.8 2.1E-17 4.6E-22 109.4 11.3 89 45-135 67-180 (185)
53 cd02959 ERp19 Endoplasmic reti 99.7 4.9E-18 1.1E-22 104.5 6.6 99 34-132 7-114 (117)
54 TIGR00385 dsbE periplasmic pro 99.7 3.5E-17 7.7E-22 107.3 11.0 112 20-133 34-173 (173)
55 cd02952 TRP14_like Human TRX-r 99.7 4.3E-17 9.2E-22 100.0 10.5 81 30-112 7-103 (119)
56 TIGR00424 APS_reduc 5'-adenyly 99.7 6.9E-17 1.5E-21 118.9 13.0 110 19-130 346-462 (463)
57 PRK00293 dipZ thiol:disulfide 99.7 4E-17 8.6E-22 123.8 12.2 107 25-131 453-570 (571)
58 TIGR00411 redox_disulf_1 small 99.7 5.7E-17 1.2E-21 93.7 10.0 79 49-131 2-82 (82)
59 PLN02309 5'-adenylylsulfate re 99.7 1.2E-16 2.6E-21 117.5 14.0 109 20-130 341-456 (457)
60 KOG0190 Protein disulfide isom 99.7 2E-17 4.4E-22 121.4 9.6 106 23-133 24-134 (493)
61 cd02992 PDI_a_QSOX PDIa family 99.7 2.2E-17 4.8E-22 101.2 8.2 77 31-110 7-89 (114)
62 PTZ00102 disulphide isomerase; 99.7 7.4E-17 1.6E-21 120.4 12.3 102 26-133 34-140 (477)
63 cd03010 TlpA_like_DsbE TlpA-li 99.7 3.2E-17 6.9E-22 102.3 8.6 84 39-123 18-126 (127)
64 TIGR01130 ER_PDI_fam protein d 99.7 7.3E-17 1.6E-21 119.7 11.9 98 31-132 7-110 (462)
65 PTZ00102 disulphide isomerase; 99.7 1.3E-16 2.8E-21 119.1 13.2 108 24-135 357-469 (477)
66 TIGR02187 GlrX_arch Glutaredox 99.7 1.9E-16 4.1E-21 107.2 12.4 90 45-134 18-114 (215)
67 TIGR02738 TrbB type-F conjugat 99.7 9.5E-17 2.1E-21 102.9 9.5 86 45-131 49-153 (153)
68 cd02982 PDI_b'_family Protein 99.7 1E-16 2.2E-21 96.5 8.2 85 46-130 12-102 (103)
69 PF13098 Thioredoxin_2: Thiore 99.7 8.6E-17 1.9E-21 98.2 7.5 84 44-127 3-112 (112)
70 TIGR02740 TraF-like TraF-like 99.7 1.3E-15 2.9E-20 106.0 13.6 93 39-132 159-265 (271)
71 PRK03147 thiol-disulfide oxido 99.7 2.9E-16 6.2E-21 102.7 9.2 92 39-130 54-171 (173)
72 cd03007 PDI_a_ERp29_N PDIa fam 99.7 5.1E-16 1.1E-20 94.6 8.6 94 30-130 6-115 (116)
73 cd03008 TryX_like_RdCVF Trypar 99.7 6.2E-16 1.3E-20 98.2 9.1 74 41-114 20-128 (146)
74 PHA02125 thioredoxin-like prot 99.7 2.2E-15 4.7E-20 85.8 9.6 70 50-127 2-73 (75)
75 cd02955 SSP411 TRX domain, SSP 99.7 2.8E-15 6E-20 92.9 10.5 94 38-131 7-119 (124)
76 TIGR02187 GlrX_arch Glutaredox 99.7 1.8E-15 3.8E-20 102.4 10.4 81 46-129 133-214 (215)
77 PF13905 Thioredoxin_8: Thiore 99.6 1.7E-15 3.7E-20 89.9 8.2 66 46-111 1-95 (95)
78 cd02964 TryX_like_family Trypa 99.6 1.3E-15 2.8E-20 95.7 8.0 79 37-115 8-116 (132)
79 PTZ00056 glutathione peroxidas 99.6 1.1E-15 2.4E-20 102.2 8.0 111 24-134 17-181 (199)
80 cd03009 TryX_like_TryX_NRX Try 99.6 2.1E-15 4.7E-20 94.5 8.4 76 39-114 11-115 (131)
81 cd02973 TRX_GRX_like Thioredox 99.6 3E-15 6.5E-20 83.3 8.1 62 50-113 3-64 (67)
82 PF08534 Redoxin: Redoxin; In 99.6 8E-16 1.7E-20 98.1 6.4 97 22-118 2-134 (146)
83 PLN02399 phospholipid hydroper 99.6 3E-15 6.5E-20 101.9 9.0 113 20-132 73-235 (236)
84 PLN02919 haloacid dehalogenase 99.6 4E-15 8.6E-20 119.5 10.8 92 43-134 417-539 (1057)
85 cd02958 UAS UAS family; UAS is 99.6 2.2E-14 4.8E-19 87.9 11.2 100 33-132 4-112 (114)
86 cd03026 AhpF_NTD_C TRX-GRX-lik 99.6 1.9E-14 4.1E-19 84.3 9.8 76 44-123 10-86 (89)
87 TIGR02661 MauD methylamine deh 99.6 5.2E-15 1.1E-19 98.3 8.3 110 22-132 48-180 (189)
88 cd03011 TlpA_like_ScsD_MtbDsbE 99.6 5.1E-15 1.1E-19 91.7 7.6 83 43-126 17-121 (123)
89 cd02966 TlpA_like_family TlpA- 99.6 1.1E-14 2.4E-19 88.3 8.9 76 42-117 15-116 (116)
90 KOG0190 Protein disulfide isom 99.6 6.9E-15 1.5E-19 108.3 8.9 114 11-130 353-472 (493)
91 cd03012 TlpA_like_DipZ_like Tl 99.6 1.6E-14 3.5E-19 90.0 9.3 80 39-118 16-125 (126)
92 TIGR00412 redox_disulf_2 small 99.6 2E-14 4.3E-19 82.0 8.9 71 50-127 2-75 (76)
93 PRK13728 conjugal transfer pro 99.6 4.4E-14 9.6E-19 92.3 11.4 84 50-134 73-174 (181)
94 TIGR01130 ER_PDI_fam protein d 99.6 3.3E-14 7.2E-19 105.6 12.1 103 25-133 347-456 (462)
95 PRK11509 hydrogenase-1 operon 99.6 2.3E-13 5.1E-18 84.5 11.7 92 46-137 34-130 (132)
96 PLN02412 probable glutathione 99.5 3.3E-14 7.2E-19 92.7 7.8 96 38-133 21-166 (167)
97 cd02960 AGR Anterior Gradient 99.5 6.3E-14 1.4E-18 87.0 8.2 89 29-118 6-99 (130)
98 cd02967 mauD Methylamine utili 99.5 1.6E-14 3.5E-19 88.3 5.6 70 45-114 20-111 (114)
99 cd02969 PRX_like1 Peroxiredoxi 99.5 8.3E-14 1.8E-18 91.1 9.0 91 45-135 24-156 (171)
100 TIGR02540 gpx7 putative glutat 99.5 9.5E-14 2.1E-18 89.3 7.8 94 38-131 14-153 (153)
101 TIGR01626 ytfJ_HI0045 conserve 99.5 2.6E-13 5.6E-18 89.1 9.6 92 38-132 51-180 (184)
102 KOG4277 Uncharacterized conser 99.5 7.9E-14 1.7E-18 96.4 7.0 87 44-130 41-131 (468)
103 KOG0912 Thiol-disulfide isomer 99.5 9.4E-14 2E-18 95.8 6.8 89 44-132 11-107 (375)
104 cd00340 GSH_Peroxidase Glutath 99.5 1.3E-13 2.7E-18 88.6 6.4 88 38-126 14-151 (152)
105 cd03014 PRX_Atyp2cys Peroxired 99.5 2.7E-13 5.9E-18 86.1 7.9 90 38-127 18-141 (143)
106 PRK00522 tpx lipid hydroperoxi 99.5 3.8E-13 8.2E-18 87.7 8.3 109 21-129 19-164 (167)
107 PF00578 AhpC-TSA: AhpC/TSA fa 99.5 1E-13 2.2E-18 85.8 5.0 92 23-114 2-124 (124)
108 KOG0191 Thioredoxin/protein di 99.4 6.9E-13 1.5E-17 96.8 9.4 91 44-134 45-137 (383)
109 PTZ00256 glutathione peroxidas 99.4 7.1E-13 1.5E-17 87.6 8.2 108 25-132 19-182 (183)
110 cd03017 PRX_BCP Peroxiredoxin 99.4 4.2E-13 9.1E-18 84.8 6.7 89 39-127 16-139 (140)
111 PF02114 Phosducin: Phosducin; 99.4 4.7E-12 1E-16 87.8 10.7 93 24-118 125-217 (265)
112 smart00594 UAS UAS domain. 99.4 6.6E-12 1.4E-16 77.8 10.2 97 31-127 12-121 (122)
113 PF13899 Thioredoxin_7: Thiore 99.4 1.9E-12 4.2E-17 74.8 6.4 74 33-107 4-81 (82)
114 PRK09437 bcp thioredoxin-depen 99.4 3.6E-12 7.8E-17 82.0 7.9 91 38-128 22-150 (154)
115 cd03015 PRX_Typ2cys Peroxiredo 99.4 6E-12 1.3E-16 82.5 9.0 92 39-130 22-156 (173)
116 COG4232 Thiol:disulfide interc 99.3 5.3E-12 1.1E-16 94.2 8.5 102 27-130 457-567 (569)
117 TIGR03137 AhpC peroxiredoxin. 99.3 2E-11 4.2E-16 81.0 9.1 90 39-128 24-153 (187)
118 KOG1672 ATP binding protein [P 99.3 2.6E-11 5.6E-16 78.9 9.2 95 20-118 62-156 (211)
119 KOG1731 FAD-dependent sulfhydr 99.3 2.5E-12 5.3E-17 95.4 4.9 102 28-132 42-154 (606)
120 cd03018 PRX_AhpE_like Peroxire 99.3 1.3E-11 2.9E-16 78.7 7.8 83 36-118 17-133 (149)
121 PF13728 TraF: F plasmid trans 99.3 1.4E-10 3.1E-15 78.3 11.9 83 44-127 118-214 (215)
122 COG2143 Thioredoxin-related pr 99.3 2E-10 4.4E-15 72.4 10.6 91 40-130 36-148 (182)
123 PF14595 Thioredoxin_9: Thiore 99.3 8.6E-11 1.9E-15 73.4 8.9 84 44-128 39-126 (129)
124 KOG0191 Thioredoxin/protein di 99.2 7.2E-11 1.6E-15 86.3 9.4 100 31-133 150-254 (383)
125 TIGR02196 GlrX_YruB Glutaredox 99.2 9.6E-11 2.1E-15 65.8 8.0 68 50-127 2-73 (74)
126 PF13192 Thioredoxin_3: Thiore 99.2 2.5E-10 5.4E-15 65.0 9.4 71 52-128 4-76 (76)
127 PRK10606 btuE putative glutath 99.2 4.6E-11 1E-15 78.8 6.7 48 38-86 17-66 (183)
128 COG0526 TrxA Thiol-disulfide i 99.2 1.1E-10 2.4E-15 70.5 7.7 84 46-129 32-122 (127)
129 PRK13190 putative peroxiredoxi 99.2 2.1E-10 4.6E-15 77.0 9.6 94 39-132 20-155 (202)
130 cd02971 PRX_family Peroxiredox 99.2 5.9E-11 1.3E-15 74.9 6.2 79 40-118 16-129 (140)
131 KOG3414 Component of the U4/U6 99.2 9.5E-10 2.1E-14 66.8 10.8 107 26-134 5-123 (142)
132 TIGR02739 TraF type-F conjugat 99.2 1.3E-09 2.8E-14 75.1 12.8 90 44-134 148-251 (256)
133 TIGR02200 GlrX_actino Glutared 99.2 3.3E-10 7E-15 64.3 7.7 70 50-128 2-76 (77)
134 PRK15000 peroxidase; Provision 99.2 5.2E-10 1.1E-14 75.0 9.6 87 45-131 33-162 (200)
135 PRK10382 alkyl hydroperoxide r 99.2 9.6E-10 2.1E-14 72.9 10.8 92 40-131 25-156 (187)
136 cd02968 SCO SCO (an acronym fo 99.1 1.1E-10 2.3E-15 74.0 5.8 47 40-86 16-68 (142)
137 cd02970 PRX_like2 Peroxiredoxi 99.1 1.9E-10 4.1E-15 73.2 6.8 71 47-117 25-148 (149)
138 PF03190 Thioredox_DsbH: Prote 99.1 4.3E-10 9.2E-15 72.3 8.1 96 37-132 28-142 (163)
139 KOG2501 Thioredoxin, nucleored 99.1 1.6E-10 3.4E-15 73.4 6.0 71 44-114 31-131 (157)
140 PRK13703 conjugal pilus assemb 99.1 3.5E-09 7.5E-14 72.7 12.4 89 45-134 142-244 (248)
141 PF06110 DUF953: Eukaryotic pr 99.1 1.9E-09 4.1E-14 66.1 9.7 81 29-109 2-99 (119)
142 COG1225 Bcp Peroxiredoxin [Pos 99.1 6.6E-10 1.4E-14 71.0 7.2 110 20-129 4-154 (157)
143 cd02991 UAS_ETEA UAS family, E 99.1 7.3E-09 1.6E-13 63.5 11.6 98 34-133 5-115 (116)
144 PRK13599 putative peroxiredoxi 99.1 1E-09 2.2E-14 74.3 8.6 88 43-130 25-155 (215)
145 PTZ00137 2-Cys peroxiredoxin; 99.1 3.2E-09 7E-14 73.5 10.2 114 18-131 66-225 (261)
146 PRK13191 putative peroxiredoxi 99.1 2E-09 4.4E-14 72.8 9.0 109 22-130 9-160 (215)
147 cd03016 PRX_1cys Peroxiredoxin 99.0 1.9E-09 4.1E-14 72.4 8.7 91 41-131 19-154 (203)
148 PRK13189 peroxiredoxin; Provis 99.0 2.3E-09 5E-14 72.9 9.1 110 21-131 10-163 (222)
149 cd01659 TRX_superfamily Thiore 99.0 1.8E-09 3.9E-14 58.2 7.2 60 50-109 1-63 (69)
150 PRK11200 grxA glutaredoxin 1; 99.0 5.6E-09 1.2E-13 60.6 8.8 75 50-131 3-83 (85)
151 PTZ00253 tryparedoxin peroxida 99.0 3E-09 6.5E-14 71.3 8.5 92 39-130 29-163 (199)
152 PRK10877 protein disulfide iso 99.0 5.8E-09 1.2E-13 71.4 9.6 80 45-130 106-230 (232)
153 PF11009 DUF2847: Protein of u 99.0 3.3E-08 7.1E-13 59.1 10.5 94 28-123 3-104 (105)
154 TIGR02180 GRX_euk Glutaredoxin 98.9 7.6E-09 1.7E-13 59.6 7.4 60 50-112 1-65 (84)
155 KOG3425 Uncharacterized conser 98.9 2.1E-08 4.6E-13 60.5 8.9 78 30-108 10-104 (128)
156 KOG0914 Thioredoxin-like prote 98.9 3.4E-09 7.4E-14 70.4 6.0 91 24-116 124-222 (265)
157 TIGR02183 GRXA Glutaredoxin, G 98.9 3.1E-08 6.8E-13 57.6 7.8 73 50-129 2-80 (86)
158 PF02966 DIM1: Mitosis protein 98.8 2.3E-07 4.9E-12 57.2 11.7 106 26-134 2-120 (133)
159 TIGR03143 AhpF_homolog putativ 98.8 3.9E-08 8.5E-13 75.2 10.2 77 47-127 476-554 (555)
160 cd03023 DsbA_Com1_like DsbA fa 98.8 5.2E-08 1.1E-12 62.1 9.2 41 45-85 4-44 (154)
161 cd02976 NrdH NrdH-redoxin (Nrd 98.8 3.6E-08 7.8E-13 55.0 7.5 67 50-126 2-72 (73)
162 KOG0911 Glutaredoxin-related p 98.8 4.3E-09 9.3E-14 70.2 3.5 101 26-132 3-103 (227)
163 PF00462 Glutaredoxin: Glutare 98.8 6.1E-08 1.3E-12 52.4 6.8 56 50-112 1-60 (60)
164 PRK11657 dsbG disulfide isomer 98.8 1.2E-07 2.6E-12 65.7 9.6 82 45-128 116-249 (251)
165 cd03020 DsbA_DsbC_DsbG DsbA fa 98.7 7.2E-08 1.6E-12 64.5 8.0 76 45-127 76-197 (197)
166 TIGR02194 GlrX_NrdH Glutaredox 98.7 1.1E-07 2.4E-12 53.3 6.9 66 51-125 2-70 (72)
167 TIGR02190 GlrX-dom Glutaredoxi 98.7 1.8E-07 4E-12 53.5 7.8 59 47-112 7-68 (79)
168 PRK10329 glutaredoxin-like pro 98.7 6.6E-07 1.4E-11 51.4 9.4 73 50-132 3-78 (81)
169 PRK15317 alkyl hydroperoxide r 98.7 2.9E-07 6.4E-12 69.9 10.0 80 46-129 116-196 (517)
170 PHA03050 glutaredoxin; Provisi 98.6 3.2E-07 7E-12 55.6 7.0 60 50-113 15-81 (108)
171 PRK10954 periplasmic protein d 98.6 4.9E-07 1.1E-11 60.9 8.5 39 46-84 37-79 (207)
172 cd03019 DsbA_DsbA DsbA family, 98.6 5.7E-07 1.2E-11 58.8 8.5 37 45-81 14-51 (178)
173 TIGR02189 GlrX-like_plant Glut 98.6 1.3E-07 2.9E-12 56.4 4.9 57 50-113 10-73 (99)
174 cd03419 GRX_GRXh_1_2_like Glut 98.6 7.7E-07 1.7E-11 51.0 7.7 58 50-112 2-64 (82)
175 cd03029 GRX_hybridPRX5 Glutare 98.5 1.3E-06 2.8E-11 48.9 8.2 66 50-127 3-71 (72)
176 PF13462 Thioredoxin_4: Thiore 98.5 1.2E-06 2.7E-11 56.3 9.2 80 45-129 11-162 (162)
177 PF05768 DUF836: Glutaredoxin- 98.5 1.6E-06 3.6E-11 49.8 8.4 77 50-128 2-81 (81)
178 TIGR03140 AhpF alkyl hydropero 98.5 1.6E-06 3.4E-11 65.9 10.1 81 46-130 117-198 (515)
179 KOG0913 Thiol-disulfide isomer 98.5 3.9E-08 8.5E-13 66.0 1.3 92 30-128 29-123 (248)
180 KOG3171 Conserved phosducin-li 98.5 8.1E-07 1.8E-11 59.1 6.5 93 24-118 138-230 (273)
181 PF13848 Thioredoxin_6: Thiore 98.4 1.5E-05 3.2E-10 52.3 12.3 95 31-129 83-184 (184)
182 TIGR03143 AhpF_homolog putativ 98.4 5.4E-06 1.2E-10 63.6 11.4 107 31-139 353-462 (555)
183 KOG3170 Conserved phosducin-li 98.4 1.8E-06 3.8E-11 57.0 7.3 102 24-130 91-200 (240)
184 cd02066 GRX_family Glutaredoxi 98.4 2.5E-06 5.4E-11 47.1 7.0 57 50-113 2-62 (72)
185 cd03027 GRX_DEP Glutaredoxin ( 98.4 2.3E-06 5E-11 48.0 6.8 57 50-113 3-63 (73)
186 TIGR02181 GRX_bact Glutaredoxi 98.4 1.2E-06 2.5E-11 50.0 5.6 56 50-112 1-60 (79)
187 cd03418 GRX_GRXb_1_3_like Glut 98.4 2.4E-06 5.3E-11 48.0 6.8 56 50-112 2-62 (75)
188 PF07449 HyaE: Hydrogenase-1 e 98.3 8E-06 1.7E-10 49.1 8.3 85 32-121 16-105 (107)
189 cd03013 PRX5_like Peroxiredoxi 98.3 3.6E-06 7.9E-11 54.2 7.3 80 39-118 21-140 (155)
190 COG0695 GrxC Glutaredoxin and 98.3 6.9E-06 1.5E-10 47.1 6.5 54 50-110 3-62 (80)
191 PF01216 Calsequestrin: Calseq 98.2 4.3E-05 9.3E-10 54.6 11.3 109 20-133 29-146 (383)
192 TIGR00365 monothiol glutaredox 98.2 1.8E-05 3.9E-10 47.0 8.2 61 46-113 11-79 (97)
193 PRK10638 glutaredoxin 3; Provi 98.2 9.4E-06 2E-10 46.7 6.5 57 50-113 4-64 (83)
194 cd03028 GRX_PICOT_like Glutare 98.1 1.7E-05 3.6E-10 46.5 6.7 60 46-112 7-74 (90)
195 cd02983 P5_C P5 family, C-term 98.1 0.00014 3.1E-09 45.5 11.2 107 25-135 3-119 (130)
196 PRK10824 glutaredoxin-4; Provi 98.1 2.2E-05 4.7E-10 48.0 6.5 51 56-113 28-82 (115)
197 COG1331 Highly conserved prote 97.9 5.3E-05 1.1E-09 58.5 7.4 93 38-132 35-148 (667)
198 COG0386 BtuE Glutathione perox 97.9 0.00017 3.6E-09 45.9 7.8 95 37-132 16-161 (162)
199 cd03072 PDI_b'_ERp44 PDIb' fam 97.9 0.00027 5.9E-09 43.0 8.6 86 45-132 15-109 (111)
200 cd02972 DsbA_family DsbA famil 97.9 6.7E-05 1.4E-09 43.7 5.8 58 50-107 1-91 (98)
201 PTZ00062 glutaredoxin; Provisi 97.8 0.00023 5E-09 47.9 8.3 72 35-113 102-180 (204)
202 KOG1752 Glutaredoxin and relat 97.7 0.00024 5.1E-09 42.7 6.7 62 46-113 13-79 (104)
203 COG1651 DsbG Protein-disulfide 97.7 0.0004 8.6E-09 47.9 8.6 36 47-82 85-120 (244)
204 PRK12759 bifunctional gluaredo 97.7 0.00018 3.9E-09 53.4 6.9 56 50-112 4-71 (410)
205 cd02981 PDI_b_family Protein D 97.7 0.0013 2.8E-08 38.6 9.5 91 28-129 3-96 (97)
206 PF01323 DSBA: DSBA-like thior 97.6 0.00067 1.4E-08 44.8 8.6 32 49-80 1-32 (193)
207 cd03073 PDI_b'_ERp72_ERp57 PDI 97.6 0.00069 1.5E-08 41.2 7.9 74 57-130 29-110 (111)
208 COG1999 Uncharacterized protei 97.6 0.00043 9.4E-09 46.7 7.3 106 28-133 49-206 (207)
209 PF00837 T4_deiodinase: Iodoth 97.6 0.00042 9.2E-09 47.3 7.1 90 39-130 95-236 (237)
210 KOG1651 Glutathione peroxidase 97.6 0.00049 1.1E-08 44.3 6.8 111 22-132 10-170 (171)
211 COG0450 AhpC Peroxiredoxin [Po 97.6 0.00057 1.2E-08 45.2 7.0 93 39-131 26-161 (194)
212 KOG0855 Alkyl hydroperoxide re 97.4 0.00063 1.4E-08 43.9 5.4 68 19-86 62-133 (211)
213 PF07912 ERp29_N: ERp29, N-ter 97.3 0.015 3.2E-07 35.8 10.9 97 31-133 10-121 (126)
214 KOG2603 Oligosaccharyltransfer 97.3 0.002 4.3E-08 45.6 7.3 106 25-132 41-167 (331)
215 PF02630 SCO1-SenC: SCO1/SenC; 97.2 0.00065 1.4E-08 44.6 4.5 60 27-86 33-97 (174)
216 cd03031 GRX_GRX_like Glutaredo 97.2 0.0013 2.9E-08 41.9 5.6 50 57-113 15-72 (147)
217 PF13743 Thioredoxin_5: Thiore 97.1 0.0023 5E-08 42.1 6.1 26 52-77 2-27 (176)
218 cd02978 KaiB_like KaiB-like fa 96.9 0.006 1.3E-07 34.0 5.7 58 49-106 3-62 (72)
219 cd03041 GST_N_2GST_N GST_N fam 96.8 0.019 4.1E-07 32.3 7.6 69 51-129 3-75 (77)
220 PRK15317 alkyl hydroperoxide r 96.8 0.033 7.1E-07 42.8 10.9 82 47-139 19-102 (517)
221 TIGR03140 AhpF alkyl hydropero 96.8 0.036 7.7E-07 42.6 11.1 84 45-139 18-103 (515)
222 cd02974 AhpF_NTD_N Alkyl hydro 96.8 0.043 9.4E-07 32.3 9.6 75 44-130 17-93 (94)
223 cd03040 GST_N_mPGES2 GST_N fam 96.6 0.044 9.6E-07 30.6 8.4 71 50-131 2-76 (77)
224 COG2761 FrnE Predicted dithiol 96.6 0.055 1.2E-06 37.0 9.6 43 92-138 177-220 (225)
225 cd03067 PDI_b_PDIR_N PDIb fami 96.5 0.052 1.1E-06 32.3 7.9 96 28-128 5-109 (112)
226 KOG2792 Putative cytochrome C 96.5 0.0095 2E-07 41.2 5.4 99 36-134 129-278 (280)
227 cd02990 UAS_FAF1 UAS family, F 96.4 0.11 2.4E-06 32.8 11.8 97 34-132 5-134 (136)
228 cd03066 PDI_b_Calsequestrin_mi 96.4 0.09 2E-06 31.2 10.1 94 26-130 2-100 (102)
229 COG4545 Glutaredoxin-related p 96.4 0.017 3.7E-07 32.3 5.1 56 51-112 5-76 (85)
230 PRK09301 circadian clock prote 96.4 0.016 3.4E-07 34.6 5.2 80 45-125 4-87 (103)
231 TIGR02654 circ_KaiB circadian 96.3 0.018 3.9E-07 33.3 5.3 71 47-118 3-75 (87)
232 PF06764 DUF1223: Protein of u 96.2 0.16 3.5E-06 34.2 10.2 80 50-134 2-101 (202)
233 COG2077 Tpx Peroxiredoxin [Pos 96.2 0.05 1.1E-06 34.7 7.2 67 20-86 18-85 (158)
234 KOG2507 Ubiquitin regulatory p 96.2 0.11 2.3E-06 38.7 9.8 95 37-132 10-112 (506)
235 COG3019 Predicted metal-bindin 96.0 0.13 2.7E-06 32.5 8.1 72 48-129 26-102 (149)
236 cd03037 GST_N_GRX2 GST_N famil 96.0 0.062 1.3E-06 29.5 6.3 67 52-127 3-69 (71)
237 cd03060 GST_N_Omega_like GST_N 96.0 0.055 1.2E-06 29.7 6.1 57 51-111 2-59 (71)
238 cd03069 PDI_b_ERp57 PDIb famil 95.8 0.19 4.1E-06 30.0 9.1 90 27-130 3-103 (104)
239 COG3634 AhpF Alkyl hydroperoxi 95.8 0.043 9.4E-07 40.1 6.3 81 45-129 115-196 (520)
240 cd02977 ArsC_family Arsenate R 95.8 0.012 2.5E-07 35.3 2.9 32 51-87 2-33 (105)
241 COG3531 Predicted protein-disu 95.7 0.11 2.3E-06 34.7 7.3 42 91-132 166-210 (212)
242 PF13848 Thioredoxin_6: Thiore 95.6 0.17 3.6E-06 33.0 8.1 64 63-130 7-74 (184)
243 PHA03075 glutaredoxin-like pro 95.5 0.034 7.4E-07 33.8 4.0 30 47-76 2-31 (123)
244 KOG0852 Alkyl hydroperoxide re 95.1 0.17 3.7E-06 33.2 6.7 94 37-130 24-160 (196)
245 PRK01655 spxA transcriptional 95.1 0.045 9.7E-07 34.3 3.9 33 50-87 2-34 (131)
246 cd03036 ArsC_like Arsenate Red 95.0 0.037 8E-07 33.6 3.4 33 51-88 2-34 (111)
247 TIGR01617 arsC_related transcr 94.9 0.052 1.1E-06 33.2 3.8 34 51-89 2-35 (117)
248 KOG2640 Thioredoxin [Function 94.5 0.015 3.2E-07 41.3 0.8 86 46-132 76-163 (319)
249 PF06053 DUF929: Domain of unk 94.5 0.2 4.3E-06 34.9 6.2 38 44-81 56-93 (249)
250 cd03035 ArsC_Yffb Arsenate Red 94.5 0.063 1.4E-06 32.3 3.4 33 51-88 2-34 (105)
251 cd00570 GST_N_family Glutathio 94.5 0.14 3E-06 27.2 4.6 55 52-111 3-59 (71)
252 cd03059 GST_N_SspA GST_N famil 94.3 0.44 9.6E-06 25.9 8.1 69 51-129 2-71 (73)
253 PF04592 SelP_N: Selenoprotein 94.2 0.45 9.8E-06 32.7 7.3 43 44-86 24-71 (238)
254 PF13417 GST_N_3: Glutathione 94.1 0.51 1.1E-05 26.1 9.2 69 53-131 2-71 (75)
255 PF07689 KaiB: KaiB domain; I 94.1 0.023 5E-07 32.6 0.9 53 53-105 3-57 (82)
256 cd03032 ArsC_Spx Arsenate Redu 93.9 0.13 2.9E-06 31.3 4.1 34 50-88 2-35 (115)
257 PF00255 GSHPx: Glutathione pe 93.6 0.22 4.7E-06 30.2 4.6 49 38-87 13-63 (108)
258 PRK12559 transcriptional regul 93.6 0.15 3.2E-06 32.0 4.0 32 50-86 2-33 (131)
259 cd03045 GST_N_Delta_Epsilon GS 93.5 0.54 1.2E-05 25.7 5.9 56 51-111 2-61 (74)
260 PF06953 ArsD: Arsenical resis 93.4 0.72 1.6E-05 28.6 6.7 54 77-132 40-103 (123)
261 COG5429 Uncharacterized secret 93.3 0.41 8.9E-06 32.9 5.8 82 47-131 42-141 (261)
262 TIGR02742 TrbC_Ftype type-F co 93.3 1.3 2.7E-05 27.8 8.9 71 33-110 12-82 (130)
263 cd03051 GST_N_GTT2_like GST_N 93.0 0.41 8.9E-06 26.0 4.8 52 51-105 2-57 (74)
264 PRK13344 spxA transcriptional 92.3 0.31 6.7E-06 30.6 4.1 32 50-86 2-33 (132)
265 cd03055 GST_N_Omega GST_N fami 91.7 1.6 3.4E-05 25.1 6.9 53 50-105 19-72 (89)
266 cd03074 PDI_b'_Calsequestrin_C 90.9 2.3 5.1E-05 25.7 9.2 86 46-131 20-120 (120)
267 PF09673 TrbC_Ftype: Type-F co 90.6 2.6 5.5E-05 25.7 8.8 70 33-108 11-80 (113)
268 cd03068 PDI_b_ERp72 PDIb famil 90.5 2.5 5.4E-05 25.4 10.8 71 26-106 2-73 (107)
269 cd03024 DsbA_FrnE DsbA family, 90.4 0.48 1E-05 31.4 3.7 35 89-127 165-200 (201)
270 PF13778 DUF4174: Domain of un 90.3 2.8 6.2E-05 25.7 8.5 82 49-130 12-111 (118)
271 cd03025 DsbA_FrnE_like DsbA fa 89.4 0.78 1.7E-05 30.1 4.1 27 50-76 3-29 (193)
272 cd03056 GST_N_4 GST_N family, 89.0 2.4 5.1E-05 22.9 5.9 56 52-112 3-62 (73)
273 cd03022 DsbA_HCCA_Iso DsbA fam 88.5 0.8 1.7E-05 30.0 3.7 33 90-127 158-191 (192)
274 cd03033 ArsC_15kD Arsenate Red 88.4 0.89 1.9E-05 27.7 3.6 32 50-86 2-33 (113)
275 PF04134 DUF393: Protein of un 86.9 1.1 2.4E-05 26.9 3.4 57 53-110 2-61 (114)
276 TIGR00014 arsC arsenate reduct 84.8 1.6 3.4E-05 26.6 3.3 32 51-87 2-33 (114)
277 COG0278 Glutaredoxin-related p 84.1 6.9 0.00015 23.4 6.5 71 38-113 7-83 (105)
278 cd03034 ArsC_ArsC Arsenate Red 84.0 1.8 3.9E-05 26.2 3.3 31 51-86 2-32 (112)
279 COG3011 Predicted thiol-disulf 83.1 9 0.00019 24.3 6.1 67 46-113 6-74 (137)
280 cd03052 GST_N_GDAP1 GST_N fami 83.1 5.8 0.00013 21.8 6.3 57 51-112 2-62 (73)
281 PRK00366 ispG 4-hydroxy-3-meth 81.2 9.4 0.0002 28.2 6.5 75 56-130 272-356 (360)
282 COG1393 ArsC Arsenate reductas 78.9 4.1 8.9E-05 25.0 3.6 22 50-71 3-24 (117)
283 cd03025 DsbA_FrnE_like DsbA fa 78.0 3.3 7.2E-05 27.1 3.3 21 90-110 160-180 (193)
284 PF09822 ABC_transp_aux: ABC-t 77.7 21 0.00047 25.0 11.8 56 46-101 25-90 (271)
285 PRK10387 glutaredoxin 2; Provi 76.9 19 0.00041 23.9 7.4 70 52-130 3-72 (210)
286 PRK10853 putative reductase; P 76.6 4.4 9.5E-05 24.9 3.2 32 50-86 2-33 (118)
287 PF07315 DUF1462: Protein of u 75.8 13 0.00029 21.7 6.1 68 56-127 7-92 (93)
288 PRK13730 conjugal transfer pil 75.7 22 0.00048 24.2 9.3 34 88-122 151-185 (212)
289 PF09695 YtfJ_HI0045: Bacteria 75.6 19 0.00042 23.4 9.0 92 39-130 30-157 (160)
290 KOG1422 Intracellular Cl- chan 74.5 25 0.00053 24.1 7.3 67 57-133 20-87 (221)
291 KOG0868 Glutathione S-transfer 74.5 2.9 6.3E-05 27.8 2.1 62 45-113 3-69 (217)
292 TIGR01616 nitro_assoc nitrogen 74.4 6.8 0.00015 24.4 3.7 31 50-85 3-33 (126)
293 PF03960 ArsC: ArsC family; I 73.2 6.8 0.00015 23.4 3.5 30 53-87 1-30 (110)
294 PRK10026 arsenate reductase; P 72.8 7.1 0.00015 24.8 3.6 31 50-85 4-34 (141)
295 PF05176 ATP-synt_10: ATP10 pr 71.5 32 0.0007 24.2 8.9 84 45-128 121-247 (252)
296 KOG1364 Predicted ubiquitin re 70.9 6.9 0.00015 28.7 3.5 59 78-136 133-194 (356)
297 cd03022 DsbA_HCCA_Iso DsbA fam 70.3 9.2 0.0002 24.9 3.9 32 52-83 3-35 (192)
298 cd03054 GST_N_Metaxin GST_N fa 70.1 15 0.00033 19.7 6.5 57 56-128 14-70 (72)
299 cd03024 DsbA_FrnE DsbA family, 68.9 11 0.00023 24.9 4.0 25 52-76 3-27 (201)
300 cd03053 GST_N_Phi GST_N family 68.6 17 0.00036 19.7 7.8 69 50-128 2-74 (76)
301 cd03061 GST_N_CLIC GST_N famil 67.6 22 0.00048 20.7 7.3 65 56-130 20-85 (91)
302 cd03021 DsbA_GSTK DsbA family, 67.4 8.8 0.00019 25.8 3.4 34 92-126 172-207 (209)
303 TIGR00612 ispG_gcpE 1-hydroxy- 67.2 33 0.00072 25.3 6.3 75 53-130 260-344 (346)
304 KOG2244 Highly conserved prote 66.5 6.6 0.00014 30.8 2.8 74 38-111 104-190 (786)
305 PF06491 Disulph_isomer: Disul 66.2 30 0.00066 21.8 10.0 107 21-132 13-133 (136)
306 PF01216 Calsequestrin: Calseq 65.2 55 0.0012 24.4 9.7 88 46-133 268-370 (383)
307 PRK09481 sspA stringent starva 65.1 39 0.00084 22.6 7.9 59 48-111 9-68 (211)
308 cd03049 GST_N_3 GST_N family, 63.8 21 0.00046 19.1 5.5 58 52-111 3-61 (73)
309 PF13409 GST_N_2: Glutathione 63.5 22 0.00047 19.2 5.9 64 57-129 1-69 (70)
310 TIGR02182 GRXB Glutaredoxin, G 63.2 43 0.00092 22.4 7.3 53 53-111 3-57 (209)
311 PF05988 DUF899: Bacterial pro 62.8 47 0.001 22.8 8.7 74 45-118 67-175 (211)
312 cd03058 GST_N_Tau GST_N family 61.7 24 0.00052 19.0 6.4 68 52-129 3-72 (74)
313 COG0821 gcpE 1-hydroxy-2-methy 61.5 53 0.0012 24.3 6.4 78 58-135 264-355 (361)
314 COG5494 Predicted thioredoxin/ 61.4 51 0.0011 22.7 6.7 72 50-128 13-85 (265)
315 PF11287 DUF3088: Protein of u 61.1 15 0.00033 22.4 3.2 51 57-107 23-76 (112)
316 PF00352 TBP: Transcription fa 61.0 23 0.00049 20.2 3.8 60 67-132 20-80 (86)
317 PF14424 Toxin-deaminase: The 60.0 41 0.00089 21.2 5.8 33 49-84 99-131 (133)
318 PF08806 Sep15_SelM: Sep15/Sel 59.7 20 0.00043 20.3 3.4 32 99-130 41-75 (78)
319 COG3411 Ferredoxin [Energy pro 56.8 31 0.00067 18.8 4.1 30 100-133 17-47 (64)
320 cd03021 DsbA_GSTK DsbA family, 56.1 28 0.0006 23.4 4.2 36 50-85 3-39 (209)
321 PF05679 CHGN: Chondroitin N-a 55.5 82 0.0018 24.6 7.0 63 46-108 281-349 (499)
322 PF04551 GcpE: GcpE protein; 55.0 68 0.0015 23.9 6.1 75 55-129 271-357 (359)
323 cd03030 GRX_SH3BGR Glutaredoxi 53.9 43 0.00093 19.5 5.4 35 77-113 30-72 (92)
324 KOG3286 Selenoprotein T [Gener 53.8 64 0.0014 22.0 5.4 71 48-118 70-143 (226)
325 PF12617 LdpA_C: Iron-Sulfur b 50.3 59 0.0013 21.8 4.8 71 62-132 21-98 (183)
326 cd03044 GST_N_EF1Bgamma GST_N 49.9 41 0.00089 18.2 6.5 55 52-110 3-60 (75)
327 cd03050 GST_N_Theta GST_N fami 48.7 43 0.00094 18.1 4.9 55 52-111 3-61 (76)
328 PF14437 MafB19-deam: MafB19-l 48.5 72 0.0016 20.5 5.6 28 46-76 99-126 (146)
329 KOG0911 Glutaredoxin-related p 48.0 64 0.0014 22.3 4.8 53 56-113 152-206 (227)
330 cd00652 TBP_TLF TATA box bindi 46.5 83 0.0018 20.7 5.9 59 68-132 19-78 (174)
331 cd03062 TRX_Fd_Sucrase TRX-lik 46.1 49 0.0011 19.4 3.7 31 99-133 52-85 (97)
332 cd03038 GST_N_etherase_LigE GS 46.0 52 0.0011 18.2 4.0 66 55-129 13-81 (84)
333 PF07700 HNOB: Heme NO binding 45.8 82 0.0018 20.4 5.2 41 45-85 126-168 (171)
334 TIGR01287 nifH nitrogenase iro 45.4 18 0.00038 25.3 2.0 58 39-98 214-271 (275)
335 PF07511 DUF1525: Protein of u 45.3 67 0.0015 19.7 4.2 15 92-106 76-90 (114)
336 PLN00062 TATA-box-binding prot 45.2 90 0.002 20.7 5.6 59 68-132 19-78 (179)
337 PF04908 SH3BGR: SH3-binding, 44.8 36 0.00079 20.2 3.0 41 51-91 3-45 (99)
338 COG2101 SPT15 TATA-box binding 44.1 70 0.0015 21.3 4.4 32 101-134 54-86 (185)
339 COG2999 GrxB Glutaredoxin 2 [P 43.9 39 0.00084 22.7 3.2 51 51-105 3-53 (215)
340 PF11453 DUF2950: Protein of u 43.4 35 0.00075 24.3 3.1 38 93-130 225-262 (271)
341 PF07152 YaeQ: YaeQ protein; 42.8 89 0.0019 20.7 4.8 90 4-96 57-146 (174)
342 TIGR03759 conj_TIGR03759 integ 42.7 72 0.0016 21.7 4.4 33 50-85 112-144 (200)
343 COG1519 KdtA 3-deoxy-D-manno-o 42.5 1.5E+02 0.0033 22.6 6.9 36 50-85 51-86 (419)
344 PRK13669 hypothetical protein; 42.4 65 0.0014 18.3 5.9 55 68-133 20-74 (78)
345 cd03039 GST_N_Sigma_like GST_N 42.3 49 0.0011 17.6 3.2 54 53-111 4-59 (72)
346 TIGR02743 TraW type-F conjugat 42.0 38 0.00082 23.0 3.1 26 86-112 172-197 (202)
347 KOG0912 Thiol-disulfide isomer 41.4 1.4E+02 0.0031 22.0 6.7 90 44-133 225-321 (375)
348 PF09547 Spore_IV_A: Stage IV 39.1 1.2E+02 0.0027 23.5 5.5 53 33-87 167-219 (492)
349 cd04518 TBP_archaea archaeal T 38.3 1E+02 0.0022 20.4 4.6 30 102-133 140-170 (174)
350 COG0295 Cdd Cytidine deaminase 37.1 53 0.0012 20.8 3.0 13 56-68 86-98 (134)
351 PF10865 DUF2703: Domain of un 36.9 1E+02 0.0022 19.1 4.8 57 56-117 13-77 (120)
352 TIGR00862 O-ClC intracellular 36.8 1.4E+02 0.0031 20.7 7.9 66 56-131 17-83 (236)
353 KOG3029 Glutathione S-transfer 36.6 1.7E+02 0.0036 21.3 7.2 70 49-131 90-161 (370)
354 PF11072 DUF2859: Protein of u 36.5 66 0.0014 20.6 3.3 18 88-105 120-137 (142)
355 KOG4498 Uncharacterized conser 36.5 88 0.0019 21.1 4.0 41 44-84 49-91 (197)
356 PRK00394 transcription factor; 36.3 1.1E+02 0.0024 20.3 4.6 29 102-132 141-170 (179)
357 PF14307 Glyco_tran_WbsX: Glyc 35.9 1.1E+02 0.0023 22.6 4.9 41 45-85 157-199 (345)
358 PF03227 GILT: Gamma interfero 35.4 1E+02 0.0022 18.4 4.3 21 50-70 3-24 (108)
359 PRK15113 glutathione S-transfe 34.9 1.4E+02 0.003 19.9 8.5 61 47-112 3-69 (214)
360 PRK11752 putative S-transferas 34.8 1.6E+02 0.0035 20.6 5.7 54 53-106 47-107 (264)
361 cd04517 TLF TBP-like factors ( 34.7 1.3E+02 0.0028 19.9 4.7 58 68-132 20-78 (174)
362 cd04516 TBP_eukaryotes eukaryo 34.3 1.3E+02 0.0028 19.9 4.6 58 68-131 19-77 (174)
363 KOG1731 FAD-dependent sulfhydr 34.1 60 0.0013 25.8 3.4 58 77-135 215-273 (606)
364 PTZ00151 translationally contr 34.0 66 0.0014 21.3 3.2 42 69-110 123-167 (172)
365 TIGR03765 ICE_PFL_4695 integra 32.9 65 0.0014 19.5 2.7 37 66-105 63-99 (105)
366 COG3581 Uncharacterized protei 32.7 1.2E+02 0.0027 23.0 4.6 59 26-85 50-112 (420)
367 TIGR03757 conj_TIGR03757 integ 32.1 1.2E+02 0.0027 18.5 4.1 15 92-106 77-91 (113)
368 KOG0854 Alkyl hydroperoxide re 32.1 1.6E+02 0.0035 19.8 8.5 42 46-87 31-76 (224)
369 COG0678 AHP1 Peroxiredoxin [Po 31.4 53 0.0012 21.3 2.3 32 44-76 35-69 (165)
370 PRK13738 conjugal transfer pil 30.2 41 0.00088 23.0 1.8 28 86-113 170-198 (209)
371 PHA02151 hypothetical protein 29.9 30 0.00065 22.5 1.1 11 49-59 206-216 (217)
372 TIGR02652 conserved hypothetic 29.6 20 0.00044 22.8 0.2 13 56-68 10-22 (163)
373 PLN02378 glutathione S-transfe 29.5 1.8E+02 0.0038 19.5 5.6 65 56-130 18-83 (213)
374 PF09654 DUF2396: Protein of u 29.2 20 0.00043 22.8 0.2 13 56-68 7-19 (161)
375 TIGR03439 methyl_EasF probable 28.4 86 0.0019 22.9 3.3 37 48-87 78-114 (319)
376 PF14639 YqgF: Holliday-juncti 27.9 1.6E+02 0.0035 18.8 4.2 41 44-85 60-106 (150)
377 PF13103 TonB_2: TonB C termin 25.9 1.3E+02 0.0028 16.6 3.4 35 102-136 31-67 (85)
378 cd06353 PBP1_BmpA_Med_like Per 25.9 2.3E+02 0.005 19.7 5.4 48 32-86 43-90 (258)
379 cd07973 Spt4 Transcription elo 25.6 1.3E+02 0.0027 17.9 3.1 69 53-129 18-93 (98)
380 PF14421 LmjF365940-deam: A di 25.1 1.1E+02 0.0024 20.5 3.0 28 57-87 156-183 (193)
381 PHA02131 hypothetical protein 24.9 1.2E+02 0.0026 16.0 4.4 27 98-124 27-53 (70)
382 PF02484 Rhabdo_NV: Rhabdoviru 24.2 1.3E+02 0.0027 17.6 2.8 40 93-132 17-57 (111)
383 PF07293 DUF1450: Protein of u 23.2 1.6E+02 0.0034 16.7 4.1 59 65-134 17-75 (78)
384 cd05863 Ig2_VEGFR-3 Second imm 22.6 78 0.0017 17.0 1.8 14 100-113 12-25 (67)
385 KOG2990 C2C2-type Zn-finger pr 22.5 82 0.0018 22.7 2.2 21 46-66 40-63 (317)
386 PF06180 CbiK: Cobalt chelatas 22.4 2E+02 0.0043 20.4 4.1 36 48-83 3-39 (262)
387 COG4752 Uncharacterized protei 21.8 1.1E+02 0.0025 19.8 2.5 17 44-60 131-147 (190)
388 cd06537 CIDE_N_B CIDE_N domain 21.6 1.2E+02 0.0027 17.3 2.4 23 91-113 30-52 (81)
389 COG5441 Uncharacterized conser 21.4 2.2E+02 0.0048 21.0 4.1 88 47-137 274-369 (401)
390 PF07366 SnoaL: SnoaL-like pol 21.3 2E+02 0.0042 17.1 4.8 63 62-124 41-123 (126)
391 cd06538 CIDE_N_FSP27 CIDE_N do 21.2 1.3E+02 0.0028 17.2 2.4 23 91-113 30-52 (79)
392 COG4312 Uncharacterized protei 21.1 3E+02 0.0065 19.3 5.7 41 46-86 74-121 (247)
393 KOG4578 Uncharacterized conser 20.8 1.7E+02 0.0037 21.8 3.5 66 46-113 65-130 (421)
394 PF02401 LYTB: LytB protein; 20.4 3.4E+02 0.0073 19.6 7.8 97 32-132 167-279 (281)
395 PF04723 GRDA: Glycine reducta 20.2 1.3E+02 0.0028 19.3 2.5 34 50-83 32-72 (150)
396 COG4822 CbiK Cobalamin biosynt 20.1 2.1E+02 0.0045 20.0 3.6 32 47-78 4-36 (265)
No 1
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=3.4e-26 Score=142.83 Aligned_cols=106 Identities=32% Similarity=0.671 Sum_probs=97.6
Q ss_pred CceEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCC-cEEEEEeCCcchhhhhhCCCcceeE
Q 032496 24 GNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVDELVEFSTSWDIKATPT 102 (139)
Q Consensus 24 ~~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~-v~~~~vd~~~~~~~~~~~~v~~~Pt 102 (139)
.....+.+.++|++.+. .++.||+|.|||+||++|+.+.|.|+++..+|.+ ++|+.+|.|++.+++.+|+|..+||
T Consensus 42 ~~~~~~~s~~~~~~~Vi---~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~ela~~Y~I~avPt 118 (150)
T KOG0910|consen 42 ATLFNVQSDSEFDDKVI---NSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPELAEDYEISAVPT 118 (150)
T ss_pred cccccccCHHHHHHHHH---ccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEccccccchHhhcceeeeeE
Confidence 34566678888988875 5689999999999999999999999999999876 9999999999999999999999999
Q ss_pred EEEEeCCeEEEEEeCC-ChHHHHHHHHHHhh
Q 032496 103 FFFLKDGQQVDKLVGA-NKPELQKKVAAAVD 132 (139)
Q Consensus 103 ~~~~~~g~~~~~~~g~-~~~~l~~~i~~~~~ 132 (139)
+++|+||....++.|. +.+.|..+|++++.
T Consensus 119 vlvfknGe~~d~~vG~~~~~~l~~~i~k~l~ 149 (150)
T KOG0910|consen 119 VLVFKNGEKVDRFVGAVPKEQLRSLIKKFLK 149 (150)
T ss_pred EEEEECCEEeeeecccCCHHHHHHHHHHHhc
Confidence 9999999999999999 99999999999875
No 2
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=1.6e-24 Score=130.42 Aligned_cols=101 Identities=51% Similarity=0.895 Sum_probs=90.3
Q ss_pred echhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhhhhhCCCcceeEEEEEeCC
Q 032496 30 TTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDG 109 (139)
Q Consensus 30 ~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g 109 (139)
.+.++++.....+...+++++++||++||++|+.+.|.+.+++.+|+++.|+.+|+|++.++++.|+|..+|||+++++|
T Consensus 5 ~~~~~~~~~~~~~~~~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~v~Flkvdvde~~~~~~~~~V~~~PTf~f~k~g 84 (106)
T KOG0907|consen 5 ETVSDLDLVLSAAEAGDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPDVVFLKVDVDELEEVAKEFNVKAMPTFVFYKGG 84 (106)
T ss_pred EehhhHHHHHHHhhCCCCeEEEEEECCCCcchhhhhhHHHHHHHHCCCCEEEEEecccCHhHHHhcCceEeeEEEEEECC
Confidence 44555666666665667999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEeCCChHHHHHHHHHH
Q 032496 110 QQVDKLVGANKPELQKKVAAA 130 (139)
Q Consensus 110 ~~~~~~~g~~~~~l~~~i~~~ 130 (139)
+.+.+..|.+..++.+.|...
T Consensus 85 ~~~~~~vGa~~~~l~~~i~~~ 105 (106)
T KOG0907|consen 85 EEVDEVVGANKAELEKKIAKH 105 (106)
T ss_pred EEEEEEecCCHHHHHHHHHhc
Confidence 999999999888888877653
No 3
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.92 E-value=5.1e-24 Score=128.59 Aligned_cols=97 Identities=29% Similarity=0.474 Sum_probs=85.7
Q ss_pred chhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcch---hhhhhCCCcceeEEEEEe
Q 032496 31 TKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELV---EFSTSWDIKATPTFFFLK 107 (139)
Q Consensus 31 ~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~---~~~~~~~v~~~Pt~~~~~ 107 (139)
+.+++++.+.. .+++++||.||++||++|+.+.|.|+++++.++++.|+.+|.+++. .++++|+|.++||+++|+
T Consensus 2 ~~~~~~~~i~~--~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~ 79 (103)
T cd02985 2 SVEELDEALKK--AKGRLVVLEFALKHSGPSVKIYPTMVKLSRTCNDVVFLLVNGDENDSTMELCRREKIIEVPHFLFYK 79 (103)
T ss_pred CHHHHHHHHHH--cCCCEEEEEEECCCCHhHHHHhHHHHHHHHHCCCCEEEEEECCCChHHHHHHHHcCCCcCCEEEEEe
Confidence 45677777742 3489999999999999999999999999999988999999999874 789999999999999999
Q ss_pred CCeEEEEEeCCChHHHHHHHHH
Q 032496 108 DGQQVDKLVGANKPELQKKVAA 129 (139)
Q Consensus 108 ~g~~~~~~~g~~~~~l~~~i~~ 129 (139)
+|+++.++.|...++|...+..
T Consensus 80 ~G~~v~~~~G~~~~~l~~~~~~ 101 (103)
T cd02985 80 DGEKIHEEEGIGPDELIGDVLY 101 (103)
T ss_pred CCeEEEEEeCCCHHHHHHHHHh
Confidence 9999999999988888877654
No 4
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.92 E-value=3e-24 Score=130.26 Aligned_cols=85 Identities=22% Similarity=0.466 Sum_probs=75.6
Q ss_pred hhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCC-cEEEEEeCCcchhhhhhCCCcceeEEEEEeCCe
Q 032496 32 KDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQ 110 (139)
Q Consensus 32 ~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~-v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~ 110 (139)
.++++..+.. .+++++||.||++||++|+.+.|.+++++.++++ +.|+.||+|++++++.+|+|.++||+++|++|+
T Consensus 2 ~~~~~~~i~~--~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~~la~~~~V~~iPTf~~fk~G~ 79 (114)
T cd02954 2 GWAVDQAILS--EEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVPDFNKMYELYDPPTVMFFFRNK 79 (114)
T ss_pred HHHHHHHHhc--cCCCEEEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCCHHHHHHcCCCCCCEEEEEECCE
Confidence 3455555531 2578999999999999999999999999999987 789999999999999999999999999999999
Q ss_pred EEEEEeCC
Q 032496 111 QVDKLVGA 118 (139)
Q Consensus 111 ~~~~~~g~ 118 (139)
.+.+..|.
T Consensus 80 ~v~~~~G~ 87 (114)
T cd02954 80 HMKIDLGT 87 (114)
T ss_pred EEEEEcCC
Confidence 99988774
No 5
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.91 E-value=2.3e-23 Score=125.55 Aligned_cols=97 Identities=25% Similarity=0.643 Sum_probs=86.5
Q ss_pred eechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCC--cEEEEEeCCcchhhhhhCCCcceeEEEEE
Q 032496 29 VTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS--LMFLLVDVDELVEFSTSWDIKATPTFFFL 106 (139)
Q Consensus 29 i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~--v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~ 106 (139)
+.+.++++..+ .++++++|+||++||++|+.+.|.++++++.+++ +.|+.+|.+ +.+++++|+|.++||+++|
T Consensus 4 i~~~~~~~~~i----~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~~~~~~~~~v~~~Pt~~~~ 78 (102)
T cd02948 4 INNQEEWEELL----SNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-TIDTLKRYRGKCEPTFLFY 78 (102)
T ss_pred ccCHHHHHHHH----ccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-CHHHHHHcCCCcCcEEEEE
Confidence 45677777766 4688999999999999999999999999999863 789999999 7788999999999999999
Q ss_pred eCCeEEEEEeCCChHHHHHHHHHH
Q 032496 107 KDGQQVDKLVGANKPELQKKVAAA 130 (139)
Q Consensus 107 ~~g~~~~~~~g~~~~~l~~~i~~~ 130 (139)
++|+.+.+..|.+.+.+.++|+++
T Consensus 79 ~~g~~~~~~~G~~~~~~~~~i~~~ 102 (102)
T cd02948 79 KNGELVAVIRGANAPLLNKTITEL 102 (102)
T ss_pred ECCEEEEEEecCChHHHHHHHhhC
Confidence 999999999999888898888753
No 6
>PHA02278 thioredoxin-like protein
Probab=99.91 E-value=1.7e-23 Score=125.78 Aligned_cols=92 Identities=23% Similarity=0.309 Sum_probs=79.7
Q ss_pred chhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCC-CcEEEEEeCCcc----hhhhhhCCCcceeEEEE
Q 032496 31 TKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP-SLMFLLVDVDEL----VEFSTSWDIKATPTFFF 105 (139)
Q Consensus 31 ~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~-~v~~~~vd~~~~----~~~~~~~~v~~~Pt~~~ 105 (139)
+.++|...+ .+++++||+|||+||++|+.+.|.++++++++. .+.|+.+|++.+ +.++++|+|.++||+++
T Consensus 3 ~~~~~~~~i----~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~ 78 (103)
T PHA02278 3 SLVDLNTAI----RQKKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLIG 78 (103)
T ss_pred CHHHHHHHH----hCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccccEEEE
Confidence 455666666 468999999999999999999999999988753 478999999976 68999999999999999
Q ss_pred EeCCeEEEEEeCC-ChHHHHHH
Q 032496 106 LKDGQQVDKLVGA-NKPELQKK 126 (139)
Q Consensus 106 ~~~g~~~~~~~g~-~~~~l~~~ 126 (139)
|++|+.+.+..|. +.+.|.++
T Consensus 79 fk~G~~v~~~~G~~~~~~l~~~ 100 (103)
T PHA02278 79 YKDGQLVKKYEDQVTPMQLQEL 100 (103)
T ss_pred EECCEEEEEEeCCCCHHHHHhh
Confidence 9999999999997 77777653
No 7
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.91 E-value=1.2e-22 Score=122.23 Aligned_cols=99 Identities=29% Similarity=0.630 Sum_probs=91.1
Q ss_pred eechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCC-CcEEEEEeCCcchhhhhhCCCcceeEEEEEe
Q 032496 29 VTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP-SLMFLLVDVDELVEFSTSWDIKATPTFFFLK 107 (139)
Q Consensus 29 i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~-~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~ 107 (139)
..+.++|++.+. .+++++||+||++||+.|+.+.|.+.++++.++ ++.|+.+|+++++.++++|+|.++||+++++
T Consensus 3 ~lt~~~f~~~i~---~~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~ 79 (103)
T PF00085_consen 3 VLTDENFEKFIN---ESDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENKELCKKYGVKSVPTIIFFK 79 (103)
T ss_dssp EESTTTHHHHHT---TTSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSHHHHHHTTCSSSSEEEEEE
T ss_pred ECCHHHHHHHHH---ccCCCEEEEEeCCCCCccccccceecccccccccccccchhhhhccchhhhccCCCCCCEEEEEE
Confidence 356778888874 247999999999999999999999999999998 7999999999999999999999999999999
Q ss_pred CCeEEEEEeCC-ChHHHHHHHHHH
Q 032496 108 DGQQVDKLVGA-NKPELQKKVAAA 130 (139)
Q Consensus 108 ~g~~~~~~~g~-~~~~l~~~i~~~ 130 (139)
+|+...++.|. +.+.|.++|++.
T Consensus 80 ~g~~~~~~~g~~~~~~l~~~i~~~ 103 (103)
T PF00085_consen 80 NGKEVKRYNGPRNAESLIEFIEKH 103 (103)
T ss_dssp TTEEEEEEESSSSHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCHHHHHHHHHcC
Confidence 99999999999 999999999863
No 8
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.90 E-value=9.7e-23 Score=128.06 Aligned_cols=109 Identities=19% Similarity=0.369 Sum_probs=95.1
Q ss_pred eEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCC-cEEEEEeCCcchhhhhhCCCcceeEEE
Q 032496 26 VSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVDELVEFSTSWDIKATPTFF 104 (139)
Q Consensus 26 ~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~-v~~~~vd~~~~~~~~~~~~v~~~Pt~~ 104 (139)
++.+.+..++++.+... .+++|||.||++||++|+.+.|.|+++++++++ +.|+.||+|++++++..|+|.+.|+++
T Consensus 5 l~~l~s~~e~d~~I~~~--~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~dla~~y~I~~~~t~~ 82 (142)
T PLN00410 5 LPHLHSGWAVDQAILAE--EERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPCTVM 82 (142)
T ss_pred HhhhCCHHHHHHHHHhc--CCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCCHHHHHHcCccCCCcEE
Confidence 45667888888888633 588999999999999999999999999999988 888999999999999999999887766
Q ss_pred -EEeCCe-EEEEEeC--------C-ChHHHHHHHHHHhhccCC
Q 032496 105 -FLKDGQ-QVDKLVG--------A-NKPELQKKVAAAVDSVVP 136 (139)
Q Consensus 105 -~~~~g~-~~~~~~g--------~-~~~~l~~~i~~~~~~~~~ 136 (139)
+|++|+ .+.+..| . +.++|.+.++.++..+..
T Consensus 83 ~ffk~g~~~vd~~tG~~~k~~~~~~~k~~l~~~i~~~~~~a~~ 125 (142)
T PLN00410 83 FFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYRGARK 125 (142)
T ss_pred EEEECCeEEEEEecccccccccccCCHHHHHHHHHHHHHHHhc
Confidence 779999 8888888 5 889999999998876543
No 9
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.90 E-value=1e-22 Score=124.68 Aligned_cols=92 Identities=22% Similarity=0.361 Sum_probs=84.9
Q ss_pred CCceEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhhhhhCCCcceeE
Q 032496 23 GGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPT 102 (139)
Q Consensus 23 ~~~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt 102 (139)
.+.+..+.+.++|.+.+ .++++++|+||++||+.|+.+.|.+++++++++++.|+.+|.++++.++++|+|.++||
T Consensus 3 ~g~v~~i~~~~~~~~~i----~~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~i~f~~Vd~~~~~~l~~~~~v~~vPt 78 (113)
T cd02989 3 HGKYREVSDEKEFFEIV----KSSERVVCHFYHPEFFRCKIMDKHLEILAKKHLETKFIKVNAEKAPFLVEKLNIKVLPT 78 (113)
T ss_pred CCCeEEeCCHHHHHHHH----hCCCcEEEEEECCCCccHHHHHHHHHHHHHHcCCCEEEEEEcccCHHHHHHCCCccCCE
Confidence 46788888888888887 35689999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCeEEEEEeCC
Q 032496 103 FFFLKDGQQVDKLVGA 118 (139)
Q Consensus 103 ~~~~~~g~~~~~~~g~ 118 (139)
+++|++|+.+.++.|.
T Consensus 79 ~l~fk~G~~v~~~~g~ 94 (113)
T cd02989 79 VILFKNGKTVDRIVGF 94 (113)
T ss_pred EEEEECCEEEEEEECc
Confidence 9999999999988765
No 10
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.90 E-value=1.7e-22 Score=123.37 Aligned_cols=100 Identities=12% Similarity=0.128 Sum_probs=84.6
Q ss_pred ceEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCC-cEEEEEeCCcchhhh-hhCCCcceeE
Q 032496 25 NVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVDELVEFS-TSWDIKATPT 102 (139)
Q Consensus 25 ~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~-v~~~~vd~~~~~~~~-~~~~v~~~Pt 102 (139)
.+.+ .+.++|++.+.- ..+++++||.||++||++|+.+.|.++++++.+.+ +.|+.||++++..++ ++|+|.++||
T Consensus 10 ~v~~-l~~~~f~~~~~v-~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~~l~~~~~~I~~~PT 87 (113)
T cd03006 10 PVLD-FYKGQLDYAEEL-RTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQGKCRKQKHFFYFPV 87 (113)
T ss_pred CeEE-echhhhHHHHhc-ccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCChHHHHHhcCCcccCE
Confidence 3444 356667665321 25689999999999999999999999999999976 899999999999998 5899999999
Q ss_pred EEEEeCCeEEEEEeCC-ChHHHHHH
Q 032496 103 FFFLKDGQQVDKLVGA-NKPELQKK 126 (139)
Q Consensus 103 ~~~~~~g~~~~~~~g~-~~~~l~~~ 126 (139)
+++|++|+....+.|. +.+.|..+
T Consensus 88 l~lf~~g~~~~~y~G~~~~~~i~~~ 112 (113)
T cd03006 88 IHLYYRSRGPIEYKGPMRAPYMEKF 112 (113)
T ss_pred EEEEECCccceEEeCCCCHHHHHhh
Confidence 9999999988888888 88888765
No 11
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.90 E-value=1.1e-22 Score=121.22 Aligned_cols=93 Identities=24% Similarity=0.472 Sum_probs=82.0
Q ss_pred HHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCC-cEEEEEeCCcchhhhhhCCCcceeEEEEEeCCeEE
Q 032496 34 IWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQV 112 (139)
Q Consensus 34 ~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~-v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~ 112 (139)
+|++.+.. ..+++++|+||++||++|+.+.|.++++++.+++ +.++.+|++++..++++|+|.++||++++++|+.+
T Consensus 2 ~f~~~i~~--~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~ 79 (96)
T cd02956 2 NFQQVLQE--STQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQPQIAQQFGVQALPTVYLFAAGQPV 79 (96)
T ss_pred ChHHHHHh--cCCCeEEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCHHHHHHcCCCCCCEEEEEeCCEEe
Confidence 35555532 2378999999999999999999999999999874 88999999999999999999999999999999999
Q ss_pred EEEeCC-ChHHHHHHHH
Q 032496 113 DKLVGA-NKPELQKKVA 128 (139)
Q Consensus 113 ~~~~g~-~~~~l~~~i~ 128 (139)
.++.|. +.++|.++|+
T Consensus 80 ~~~~g~~~~~~l~~~l~ 96 (96)
T cd02956 80 DGFQGAQPEEQLRQMLD 96 (96)
T ss_pred eeecCCCCHHHHHHHhC
Confidence 999998 8888888763
No 12
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.90 E-value=1.8e-22 Score=124.07 Aligned_cols=98 Identities=12% Similarity=0.200 Sum_probs=87.7
Q ss_pred echhHHHHHHHHHhhCCCEEEEEEeCCCChh--hh--hhhHhHHHHHHhC--C-CcEEEEEeCCcchhhhhhCCCcceeE
Q 032496 30 TTKDIWDQKMSEASKEGKIVIANFSATWCGP--CR--MIAPFFSELSEKY--P-SLMFLLVDVDELVEFSTSWDIKATPT 102 (139)
Q Consensus 30 ~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~--C~--~~~~~l~~~~~~~--~-~v~~~~vd~~~~~~~~~~~~v~~~Pt 102 (139)
.+.++|++.+. .++.++|++||+.||++ |+ .+.|.+.+++.++ . ++.|+.||+++++.++.+|+|+++||
T Consensus 14 lt~~nF~~~v~---~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~La~~~~I~~iPT 90 (120)
T cd03065 14 LNEKNYKQVLK---KYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAKVAKKLGLDEEDS 90 (120)
T ss_pred CChhhHHHHHH---hCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHHHHHHcCCccccE
Confidence 35788988885 45779999999999976 99 8889999998887 4 59999999999999999999999999
Q ss_pred EEEEeCCeEEEEEeCC-ChHHHHHHHHHHh
Q 032496 103 FFFLKDGQQVDKLVGA-NKPELQKKVAAAV 131 (139)
Q Consensus 103 ~~~~~~g~~~~~~~g~-~~~~l~~~i~~~~ 131 (139)
+++|++|+++. +.|. +.+.|..+|.+++
T Consensus 91 l~lfk~G~~v~-~~G~~~~~~l~~~l~~~~ 119 (120)
T cd03065 91 IYVFKDDEVIE-YDGEFAADTLVEFLLDLI 119 (120)
T ss_pred EEEEECCEEEE-eeCCCCHHHHHHHHHHHh
Confidence 99999999887 8898 9999999999875
No 13
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.90 E-value=5.1e-23 Score=123.52 Aligned_cols=83 Identities=17% Similarity=0.328 Sum_probs=76.9
Q ss_pred hCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCC-cchhhhhhCCCcceeEEEEEeCCeEEEEEeCC-ChH
Q 032496 44 KEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVD-ELVEFSTSWDIKATPTFFFLKDGQQVDKLVGA-NKP 121 (139)
Q Consensus 44 ~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~-~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~ 121 (139)
.++++++|.||++||++|+.+.|.++++++.++++.++.+|.+ +++.++++|+|.++||+++|++| .+.++.|. +.+
T Consensus 16 ~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~~~~~~vd~~~~~~~l~~~~~V~~~PT~~lf~~g-~~~~~~G~~~~~ 94 (100)
T cd02999 16 NREDYTAVLFYASWCPFSASFRPHFNALSSMFPQIRHLAIEESSIKPSLLSRYGVVGFPTILLFNST-PRVRYNGTRTLD 94 (100)
T ss_pred cCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhccCceEEEECCCCCHHHHHhcCCeecCEEEEEcCC-ceeEecCCCCHH
Confidence 5799999999999999999999999999999999999999999 78999999999999999999998 77888898 888
Q ss_pred HHHHHH
Q 032496 122 ELQKKV 127 (139)
Q Consensus 122 ~l~~~i 127 (139)
.|.+||
T Consensus 95 ~l~~f~ 100 (100)
T cd02999 95 SLAAFY 100 (100)
T ss_pred HHHhhC
Confidence 887764
No 14
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.90 E-value=1e-22 Score=124.42 Aligned_cols=99 Identities=14% Similarity=0.232 Sum_probs=85.5
Q ss_pred chhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCC--CcEEEEEeCCcchhhhhhCCCcceeEEEEEeC
Q 032496 31 TKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP--SLMFLLVDVDELVEFSTSWDIKATPTFFFLKD 108 (139)
Q Consensus 31 ~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~ 108 (139)
+..+|.+.+.. ...+++++|.||++||++|+.+.|.+.+++++++ ++.++.+|+++++.++.+|+|.++||+++|++
T Consensus 10 ~~~~~~~~~~~-~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~l~~~~~V~~~Pt~~i~~~ 88 (111)
T cd02963 10 TFSQYENEIVP-KSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERRLARKLGAHSVPAIVGIIN 88 (111)
T ss_pred eHHHHHHhhcc-ccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHHHHHHcCCccCCEEEEEEC
Confidence 45556544422 1357999999999999999999999999999986 48999999999999999999999999999999
Q ss_pred CeEEEEEeCC-ChHHHHHHHHHH
Q 032496 109 GQQVDKLVGA-NKPELQKKVAAA 130 (139)
Q Consensus 109 g~~~~~~~g~-~~~~l~~~i~~~ 130 (139)
|+.+.+..|. +.+.|.++|+++
T Consensus 89 g~~~~~~~G~~~~~~l~~~i~~~ 111 (111)
T cd02963 89 GQVTFYHDSSFTKQHVVDFVRKL 111 (111)
T ss_pred CEEEEEecCCCCHHHHHHHHhcC
Confidence 9999998897 888898888753
No 15
>PRK09381 trxA thioredoxin; Provisional
Probab=99.89 E-value=6.9e-22 Score=120.37 Aligned_cols=103 Identities=29% Similarity=0.643 Sum_probs=90.4
Q ss_pred ceEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCC-cEEEEEeCCcchhhhhhCCCcceeEE
Q 032496 25 NVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVDELVEFSTSWDIKATPTF 103 (139)
Q Consensus 25 ~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~-v~~~~vd~~~~~~~~~~~~v~~~Pt~ 103 (139)
.+.++ +.++|.+.+. ..+++++|+||++||++|+.+.|.++++++++++ +.++.+|++..+.++++|++.++||+
T Consensus 4 ~v~~~-~~~~~~~~v~---~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~ 79 (109)
T PRK09381 4 KIIHL-TDDSFDTDVL---KADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTL 79 (109)
T ss_pred cceee-ChhhHHHHHh---cCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChhHHHhCCCCcCCEE
Confidence 34455 4467776653 3578999999999999999999999999999964 89999999999999999999999999
Q ss_pred EEEeCCeEEEEEeCC-ChHHHHHHHHHHh
Q 032496 104 FFLKDGQQVDKLVGA-NKPELQKKVAAAV 131 (139)
Q Consensus 104 ~~~~~g~~~~~~~g~-~~~~l~~~i~~~~ 131 (139)
+++++|+++.+..|. +.++|..+|++.+
T Consensus 80 ~~~~~G~~~~~~~G~~~~~~l~~~i~~~~ 108 (109)
T PRK09381 80 LLFKNGEVAATKVGALSKGQLKEFLDANL 108 (109)
T ss_pred EEEeCCeEEEEecCCCCHHHHHHHHHHhc
Confidence 999999999999998 8899999998875
No 16
>PRK10996 thioredoxin 2; Provisional
Probab=99.89 E-value=1.4e-21 Score=123.86 Aligned_cols=104 Identities=32% Similarity=0.613 Sum_probs=90.3
Q ss_pred CCceEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCC-CcEEEEEeCCcchhhhhhCCCccee
Q 032496 23 GGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP-SLMFLLVDVDELVEFSTSWDIKATP 101 (139)
Q Consensus 23 ~~~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~-~v~~~~vd~~~~~~~~~~~~v~~~P 101 (139)
.+.+..+ +.+++++.+ .++++++|+||++||++|+.+.+.+.++++++. ++.|+.+|.++++.++++|+|.++|
T Consensus 34 ~~~~i~~-~~~~~~~~i----~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~V~~~P 108 (139)
T PRK10996 34 DGEVINA-TGETLDKLL----QDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAERELSARFRIRSIP 108 (139)
T ss_pred CCCCEEc-CHHHHHHHH----hCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCHHHHHhcCCCccC
Confidence 3334443 566776655 458999999999999999999999999998876 5999999999999999999999999
Q ss_pred EEEEEeCCeEEEEEeCC-ChHHHHHHHHHHh
Q 032496 102 TFFFLKDGQQVDKLVGA-NKPELQKKVAAAV 131 (139)
Q Consensus 102 t~~~~~~g~~~~~~~g~-~~~~l~~~i~~~~ 131 (139)
|+++|++|+++.++.|. +.+.|.++|++++
T Consensus 109 tlii~~~G~~v~~~~G~~~~e~l~~~l~~~~ 139 (139)
T PRK10996 109 TIMIFKNGQVVDMLNGAVPKAPFDSWLNEAL 139 (139)
T ss_pred EEEEEECCEEEEEEcCCCCHHHHHHHHHHhC
Confidence 99999999999999998 8899999998764
No 17
>PTZ00051 thioredoxin; Provisional
Probab=99.89 E-value=5.6e-22 Score=118.53 Aligned_cols=95 Identities=42% Similarity=0.835 Sum_probs=85.9
Q ss_pred eEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhhhhhCCCcceeEEEE
Q 032496 26 VSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFF 105 (139)
Q Consensus 26 ~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~ 105 (139)
+..+.+.+++...+ ..+++++++||++||++|+.+.+.+++++++++++.|+.+|++++..++++|++.++||+++
T Consensus 2 v~~i~~~~~~~~~~----~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~ 77 (98)
T PTZ00051 2 VHIVTSQAEFESTL----SQNELVIVDFYAEWCGPCKRIAPFYEECSKEYTKMVFVKVDVDELSEVAEKENITSMPTFKV 77 (98)
T ss_pred eEEecCHHHHHHHH----hcCCeEEEEEECCCCHHHHHHhHHHHHHHHHcCCcEEEEEECcchHHHHHHCCCceeeEEEE
Confidence 55677777777766 46789999999999999999999999999999899999999999999999999999999999
Q ss_pred EeCCeEEEEEeCCChHHHH
Q 032496 106 LKDGQQVDKLVGANKPELQ 124 (139)
Q Consensus 106 ~~~g~~~~~~~g~~~~~l~ 124 (139)
+++|+++.++.|...++|.
T Consensus 78 ~~~g~~~~~~~G~~~~~~~ 96 (98)
T PTZ00051 78 FKNGSVVDTLLGANDEALK 96 (98)
T ss_pred EeCCeEEEEEeCCCHHHhh
Confidence 9999999999998777664
No 18
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.89 E-value=1.6e-22 Score=121.58 Aligned_cols=92 Identities=21% Similarity=0.407 Sum_probs=82.2
Q ss_pred chhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCC-cEEEEEeCCcchhhhhhCCCcceeEEEEEeCC
Q 032496 31 TKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVDELVEFSTSWDIKATPTFFFLKDG 109 (139)
Q Consensus 31 ~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~-v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g 109 (139)
+.++|++.+ .++++++|.||++||++|+.+.|.++++++++++ +.|+.+|+++++.++++|+|.++||+++|++|
T Consensus 7 ~~~~f~~~v----~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g 82 (101)
T cd03003 7 DRGDFDAAV----NSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRMLCRSQGVNSYPSLYVFPSG 82 (101)
T ss_pred CHhhHHHHh----cCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccHHHHHHcCCCccCEEEEEcCC
Confidence 566777766 3568999999999999999999999999999975 89999999999999999999999999999999
Q ss_pred eEEEEEeCC-ChHHHHHH
Q 032496 110 QQVDKLVGA-NKPELQKK 126 (139)
Q Consensus 110 ~~~~~~~g~-~~~~l~~~ 126 (139)
+...++.|. +.+.|.++
T Consensus 83 ~~~~~~~G~~~~~~l~~f 100 (101)
T cd03003 83 MNPEKYYGDRSKESLVKF 100 (101)
T ss_pred CCcccCCCCCCHHHHHhh
Confidence 988888887 77777664
No 19
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.89 E-value=3.5e-22 Score=120.68 Aligned_cols=94 Identities=17% Similarity=0.341 Sum_probs=82.7
Q ss_pred chhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCC-cEEEEEeCCcchhhhhhCCCcceeEEEEEeCC
Q 032496 31 TKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVDELVEFSTSWDIKATPTFFFLKDG 109 (139)
Q Consensus 31 ~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~-v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g 109 (139)
+.++|++.+. .++++++|.||++||++|+.+.|.++++++++.+ +.|+.+|+++++.++++|+|.++||+++|++|
T Consensus 7 ~~~~f~~~i~---~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g 83 (104)
T cd03004 7 TPEDFPELVL---NRKEPWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKYESLCQQANIRAYPTIRLYPGN 83 (104)
T ss_pred CHHHHHHHHh---cCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCchHHHHHHcCCCcccEEEEEcCC
Confidence 5667777664 4577999999999999999999999999999864 89999999999999999999999999999877
Q ss_pred -eEEEEEeCC-C-hHHHHHHH
Q 032496 110 -QQVDKLVGA-N-KPELQKKV 127 (139)
Q Consensus 110 -~~~~~~~g~-~-~~~l~~~i 127 (139)
+...++.|. + .++|..+|
T Consensus 84 ~~~~~~~~G~~~~~~~l~~~i 104 (104)
T cd03004 84 ASKYHSYNGWHRDADSILEFI 104 (104)
T ss_pred CCCceEccCCCCCHHHHHhhC
Confidence 888889887 6 88887664
No 20
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.89 E-value=4.5e-22 Score=121.99 Aligned_cols=93 Identities=25% Similarity=0.501 Sum_probs=82.2
Q ss_pred CCceEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhhhhhCCCcceeE
Q 032496 23 GGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPT 102 (139)
Q Consensus 23 ~~~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt 102 (139)
.+.+..+.. ++|.+.+... ..+++++|+||++||+.|+.+.|.+++++++++++.|+.+|++++ .++.+|+|.++||
T Consensus 3 ~g~v~~i~~-~~f~~~i~~~-~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~v~f~~vd~~~~-~l~~~~~i~~~Pt 79 (113)
T cd02957 3 FGEVREISS-KEFLEEVTKA-SKGTRVVVHFYEPGFPRCKILDSHLEELAAKYPETKFVKINAEKA-FLVNYLDIKVLPT 79 (113)
T ss_pred CceEEEEcH-HHHHHHHHcc-CCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEEchhh-HHHHhcCCCcCCE
Confidence 356777766 7888777532 124899999999999999999999999999999999999999999 9999999999999
Q ss_pred EEEEeCCeEEEEEeCC
Q 032496 103 FFFLKDGQQVDKLVGA 118 (139)
Q Consensus 103 ~~~~~~g~~~~~~~g~ 118 (139)
+++|++|+.+.++.|.
T Consensus 80 ~~~f~~G~~v~~~~G~ 95 (113)
T cd02957 80 LLVYKNGELIDNIVGF 95 (113)
T ss_pred EEEEECCEEEEEEecH
Confidence 9999999999998875
No 21
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=1.6e-22 Score=138.64 Aligned_cols=106 Identities=25% Similarity=0.558 Sum_probs=94.6
Q ss_pred eEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCC-cEEEEEeCCcchhhhhhCCCcceeEEE
Q 032496 26 VSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVDELVEFSTSWDIKATPTFF 104 (139)
Q Consensus 26 ~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~-v~~~~vd~~~~~~~~~~~~v~~~Pt~~ 104 (139)
+.++ +..+|++.+... ...+||||+||+|||++|+...|.|+++...|.+ +.++.||+|.++.++.+|||+++||++
T Consensus 25 I~dv-T~anfe~~V~~~-S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~vAaqfgiqsIPtV~ 102 (304)
T COG3118 25 IKDV-TEANFEQEVIQS-SREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPMVAAQFGVQSIPTVY 102 (304)
T ss_pred ceec-hHhHHHHHHHHH-ccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcchhHHHHhCcCcCCeEE
Confidence 4554 566677777655 3456999999999999999999999999999986 999999999999999999999999999
Q ss_pred EEeCCeEEEEEeCC-ChHHHHHHHHHHhhc
Q 032496 105 FLKDGQQVDKLVGA-NKPELQKKVAAAVDS 133 (139)
Q Consensus 105 ~~~~g~~~~~~~g~-~~~~l~~~i~~~~~~ 133 (139)
.|++|+++.-+.|. ..+.+..||++++..
T Consensus 103 af~dGqpVdgF~G~qPesqlr~~ld~~~~~ 132 (304)
T COG3118 103 AFKDGQPVDGFQGAQPESQLRQFLDKVLPA 132 (304)
T ss_pred EeeCCcCccccCCCCcHHHHHHHHHHhcCh
Confidence 99999999999999 777999999998765
No 22
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.89 E-value=8.7e-22 Score=117.45 Aligned_cols=94 Identities=35% Similarity=0.778 Sum_probs=83.2
Q ss_pred hhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHh-CCCcEEEEEeCCcchhhhhhCCCcceeEEEEEeCCe
Q 032496 32 KDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEK-YPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQ 110 (139)
Q Consensus 32 ~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~-~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~ 110 (139)
.+++++.+... .+++++|+||++||+.|+.+.+.|+++.++ .+++.++.+|.+++++++++|++.++||+++|++|+
T Consensus 2 ~~~~~~~~~~~--~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~ 79 (97)
T cd02984 2 EEEFEELLKSD--ASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPEISEKFEITAVPTFVFFRNGT 79 (97)
T ss_pred HHHHHHHHhhC--CCCEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCHHHHHhcCCccccEEEEEECCE
Confidence 45666666533 269999999999999999999999999999 557999999999999999999999999999999999
Q ss_pred EEEEEeCCChHHHHHHH
Q 032496 111 QVDKLVGANKPELQKKV 127 (139)
Q Consensus 111 ~~~~~~g~~~~~l~~~i 127 (139)
++.+..|...++|.+.|
T Consensus 80 ~~~~~~g~~~~~l~~~~ 96 (97)
T cd02984 80 IVDRVSGADPKELAKKV 96 (97)
T ss_pred EEEEEeCCCHHHHHHhh
Confidence 99999999888887765
No 23
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.88 E-value=2.3e-21 Score=116.94 Aligned_cols=97 Identities=22% Similarity=0.358 Sum_probs=82.7
Q ss_pred hhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCC-cEEEEEeCCcchhhhhhCCCcceeEEEEEeCCe
Q 032496 32 KDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQ 110 (139)
Q Consensus 32 ~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~-v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~ 110 (139)
.+++++.+..+ ++++|||.|+++||++|+.+.|.|+++++++++ +.|+.||.|+.+++++.|+|...||+++|++|+
T Consensus 2 ~~~~d~~i~~~--~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~dva~~y~I~amPtfvffkngk 79 (114)
T cd02986 2 KKEVDQAIKST--AEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKVPVYTQYFDISYIPSTIFFFNGQ 79 (114)
T ss_pred HHHHHHHHHhc--CCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccccHHHHHhcCceeCcEEEEEECCc
Confidence 34566666544 689999999999999999999999999999998 999999999999999999999999999999998
Q ss_pred EEEEEeCC-----------ChHHHHHHHHHH
Q 032496 111 QVDKLVGA-----------NKPELQKKVAAA 130 (139)
Q Consensus 111 ~~~~~~g~-----------~~~~l~~~i~~~ 130 (139)
-+....|. +.+++.+.++.+
T Consensus 80 h~~~d~gt~~~~k~~~~~~~k~~~idi~e~~ 110 (114)
T cd02986 80 HMKVDYGSPDHTKFVGSFKTKQDFIDLIEVI 110 (114)
T ss_pred EEEEecCCCCCcEEEEEcCchhHHHHHHHHH
Confidence 87654432 557777776654
No 24
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.87 E-value=3.2e-21 Score=122.49 Aligned_cols=92 Identities=27% Similarity=0.574 Sum_probs=82.2
Q ss_pred hhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCC-cEEEEEeCCcc--hhhhhhCCCcceeEEEEE-eCCeEEEEEeCC
Q 032496 43 SKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVDEL--VEFSTSWDIKATPTFFFL-KDGQQVDKLVGA 118 (139)
Q Consensus 43 ~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~-v~~~~vd~~~~--~~~~~~~~v~~~Pt~~~~-~~g~~~~~~~g~ 118 (139)
..+++++||+||++||++|+.+.|.+.++++.+.+ +.|+.+|++.. ..++++|+|.++||+++| ++|+++.++.|.
T Consensus 17 ~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~~G~~v~~~~G~ 96 (142)
T cd02950 17 LSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDREGNEEGQSIGL 96 (142)
T ss_pred HhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECCCCCEEEEEeCC
Confidence 36789999999999999999999999999999864 78888888754 578899999999999999 689999999999
Q ss_pred -ChHHHHHHHHHHhhcc
Q 032496 119 -NKPELQKKVAAAVDSV 134 (139)
Q Consensus 119 -~~~~l~~~i~~~~~~~ 134 (139)
..++|.++|+++++..
T Consensus 97 ~~~~~l~~~l~~l~~~~ 113 (142)
T cd02950 97 QPKQVLAQNLDALVAGE 113 (142)
T ss_pred CCHHHHHHHHHHHHcCC
Confidence 7899999999988654
No 25
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.87 E-value=2.4e-21 Score=116.84 Aligned_cols=91 Identities=18% Similarity=0.279 Sum_probs=81.4
Q ss_pred chhHHHHHHHHHhhCCCEEEEEEeCCC--ChhhhhhhHhHHHHHHhCCC-cEEEEEeCCcchhhhhhCCCcceeEEEEEe
Q 032496 31 TKDIWDQKMSEASKEGKIVIANFSATW--CGPCRMIAPFFSELSEKYPS-LMFLLVDVDELVEFSTSWDIKATPTFFFLK 107 (139)
Q Consensus 31 ~~~~~~~~~~~~~~~~k~vlv~f~~~~--C~~C~~~~~~l~~~~~~~~~-v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~ 107 (139)
+.++|+..+ ..+.+++|.||++| |+.|+.+.|.|.++++++++ +.|+.+|++++++++.+|+|.++||+++|+
T Consensus 16 ~~~~~~~~~----~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~~la~~f~V~sIPTli~fk 91 (111)
T cd02965 16 DAATLDDWL----AAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQALAARFGVLRTPALLFFR 91 (111)
T ss_pred ccccHHHHH----hCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCHHHHHHcCCCcCCEEEEEE
Confidence 556666545 56789999999997 99999999999999999987 889999999999999999999999999999
Q ss_pred CCeEEEEEeCC-ChHHHHH
Q 032496 108 DGQQVDKLVGA-NKPELQK 125 (139)
Q Consensus 108 ~g~~~~~~~g~-~~~~l~~ 125 (139)
+|+++.+..|. +.+++..
T Consensus 92 dGk~v~~~~G~~~~~e~~~ 110 (111)
T cd02965 92 DGRYVGVLAGIRDWDEYVA 110 (111)
T ss_pred CCEEEEEEeCccCHHHHhh
Confidence 99999999998 7777653
No 26
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.87 E-value=5.6e-21 Score=125.09 Aligned_cols=95 Identities=16% Similarity=0.287 Sum_probs=84.5
Q ss_pred CCCceEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhhhhhCCCccee
Q 032496 22 AGGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATP 101 (139)
Q Consensus 22 ~~~~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P 101 (139)
..+.+.++...++|...+... .++.+|||+||++||+.|+.+.|.|.+++.+|+.++|+.||+++. .++.+|+|.++|
T Consensus 60 ~~g~v~ei~~~~~f~~~v~~~-~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d~~-~l~~~f~v~~vP 137 (175)
T cd02987 60 RFGKVYELDSGEQFLDAIDKE-GKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYPAVKFCKIRASAT-GASDEFDTDALP 137 (175)
T ss_pred CCCeEEEcCCHHHHHHHHHhc-CCCcEEEEEEECCCCchHHHHHHHHHHHHHHCCCeEEEEEeccch-hhHHhCCCCCCC
Confidence 467888888878888887533 234599999999999999999999999999999999999999987 899999999999
Q ss_pred EEEEEeCCeEEEEEeCC
Q 032496 102 TFFFLKDGQQVDKLVGA 118 (139)
Q Consensus 102 t~~~~~~g~~~~~~~g~ 118 (139)
|+++|++|+.+.++.|.
T Consensus 138 Tlllyk~G~~v~~~vG~ 154 (175)
T cd02987 138 ALLVYKGGELIGNFVRV 154 (175)
T ss_pred EEEEEECCEEEEEEech
Confidence 99999999999988765
No 27
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.87 E-value=3e-21 Score=117.41 Aligned_cols=93 Identities=26% Similarity=0.495 Sum_probs=79.3
Q ss_pred chhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhC----C---CcEEEEEeCCcchhhhhhCCCcceeEE
Q 032496 31 TKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKY----P---SLMFLLVDVDELVEFSTSWDIKATPTF 103 (139)
Q Consensus 31 ~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~----~---~v~~~~vd~~~~~~~~~~~~v~~~Pt~ 103 (139)
+.++|++.+ .++++++|+||++||++|+.+.|.++++++.+ + .+.|+.+|+++++.++++|+|.++||+
T Consensus 7 ~~~~f~~~i----~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Ptl 82 (108)
T cd02996 7 TSGNIDDIL----QSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRINKYPTL 82 (108)
T ss_pred CHhhHHHHH----hcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCCCcCCEE
Confidence 567787765 45789999999999999999999999888764 2 388999999999999999999999999
Q ss_pred EEEeCCeE-EEEEeCC-ChHHHHHHH
Q 032496 104 FFLKDGQQ-VDKLVGA-NKPELQKKV 127 (139)
Q Consensus 104 ~~~~~g~~-~~~~~g~-~~~~l~~~i 127 (139)
++|++|++ ...+.|. +.+.|..+|
T Consensus 83 ~~~~~g~~~~~~~~g~~~~~~l~~fi 108 (108)
T cd02996 83 KLFRNGMMMKREYRGQRSVEALAEFV 108 (108)
T ss_pred EEEeCCcCcceecCCCCCHHHHHhhC
Confidence 99999984 4666777 888887764
No 28
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.87 E-value=1.3e-20 Score=127.23 Aligned_cols=110 Identities=16% Similarity=0.356 Sum_probs=94.3
Q ss_pred ceEEeechhHHHHHHHHHh-hCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCC-cEEEEEeCCcchhhhhhCCCcceeE
Q 032496 25 NVSLVTTKDIWDQKMSEAS-KEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVDELVEFSTSWDIKATPT 102 (139)
Q Consensus 25 ~~~~i~~~~~~~~~~~~~~-~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~-v~~~~vd~~~~~~~~~~~~v~~~Pt 102 (139)
.+..+ +.++|++.+.... ..+++++|+||++||++|+.+.|.++++++++++ +.+..+|+++++.++++|+|.++||
T Consensus 31 ~Vv~L-t~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~~~l~~~~~I~~~PT 109 (224)
T PTZ00443 31 ALVLL-NDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRALNLAKRFAIKGYPT 109 (224)
T ss_pred CcEEC-CHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCcccHHHHHHcCCCcCCE
Confidence 34444 6778887765321 2468999999999999999999999999999985 8899999999999999999999999
Q ss_pred EEEEeCCeEEEEEeCC-ChHHHHHHHHHHhhccC
Q 032496 103 FFFLKDGQQVDKLVGA-NKPELQKKVAAAVDSVV 135 (139)
Q Consensus 103 ~~~~~~g~~~~~~~g~-~~~~l~~~i~~~~~~~~ 135 (139)
+++|++|+.+....|. +.++|.+++.+......
T Consensus 110 l~~f~~G~~v~~~~G~~s~e~L~~fi~~~~~~~~ 143 (224)
T PTZ00443 110 LLLFDKGKMYQYEGGDRSTEKLAAFALGDFKKAL 143 (224)
T ss_pred EEEEECCEEEEeeCCCCCHHHHHHHHHHHHHhhc
Confidence 9999999999888886 99999999998876653
No 29
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=2.9e-21 Score=129.06 Aligned_cols=111 Identities=40% Similarity=0.785 Sum_probs=102.6
Q ss_pred ceEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhhhhhCCCcceeEEE
Q 032496 25 NVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFF 104 (139)
Q Consensus 25 ~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~ 104 (139)
+|..+.+..+|...+..+ ..|.++|.|++.||++|++..|.+.+++++|++..|..||.|+++..+..+||...|||+
T Consensus 2 ~Vi~v~~d~df~~~ls~a--g~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~aVFlkVdVd~c~~taa~~gV~amPTFi 79 (288)
T KOG0908|consen 2 PVIVVNSDSDFQRELSAA--GGKLVVVDFTASWCGPCKRIAPIFSDLANKYPGAVFLKVDVDECRGTAATNGVNAMPTFI 79 (288)
T ss_pred CeEEecCcHHHHHhhhcc--CceEEEEEEEecccchHHhhhhHHHHhhhhCcccEEEEEeHHHhhchhhhcCcccCceEE
Confidence 678888999999888644 468999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCeEEEEEeCCChHHHHHHHHHHhhccCCC
Q 032496 105 FLKDGQQVDKLVGANKPELQKKVAAAVDSVVPS 137 (139)
Q Consensus 105 ~~~~g~~~~~~~g~~~~~l~~~i~~~~~~~~~~ 137 (139)
+|.||..+..+-|.+...|+..+.++.....+.
T Consensus 80 ff~ng~kid~~qGAd~~gLe~kv~~~~stsaa~ 112 (288)
T KOG0908|consen 80 FFRNGVKIDQIQGADASGLEEKVAKYASTSAAS 112 (288)
T ss_pred EEecCeEeeeecCCCHHHHHHHHHHHhccCccc
Confidence 999999999999999999999999988776554
No 30
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.86 E-value=1.2e-20 Score=112.99 Aligned_cols=97 Identities=34% Similarity=0.761 Sum_probs=85.4
Q ss_pred hhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCC-CcEEEEEeCCcchhhhhhCCCcceeEEEEEeCCe
Q 032496 32 KDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP-SLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQ 110 (139)
Q Consensus 32 ~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~-~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~ 110 (139)
.+++.+.+. ..+++++|+||++||+.|+.+.+.++++.++++ ++.|+.+|++++..++++|++..+|+++++.+|+
T Consensus 3 ~~~~~~~~~---~~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g~ 79 (101)
T TIGR01068 3 DANFDETIA---SSDKPVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPDIAAKYGIRSIPTLLLFKNGK 79 (101)
T ss_pred HHHHHHHHh---hcCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCCcCCEEEEEeCCc
Confidence 455665553 346799999999999999999999999998887 4999999999999999999999999999999999
Q ss_pred EEEEEeCC-ChHHHHHHHHHHh
Q 032496 111 QVDKLVGA-NKPELQKKVAAAV 131 (139)
Q Consensus 111 ~~~~~~g~-~~~~l~~~i~~~~ 131 (139)
......|. +.+.+.++|.+.+
T Consensus 80 ~~~~~~g~~~~~~l~~~l~~~~ 101 (101)
T TIGR01068 80 EVDRSVGALPKAALKQLINKNL 101 (101)
T ss_pred EeeeecCCCCHHHHHHHHHhhC
Confidence 99888888 8899999988753
No 31
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.86 E-value=1.2e-20 Score=113.46 Aligned_cols=96 Identities=26% Similarity=0.484 Sum_probs=81.0
Q ss_pred eEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCC--CcEEEEEeCCcchhhhhhCCCcceeEE
Q 032496 26 VSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP--SLMFLLVDVDELVEFSTSWDIKATPTF 103 (139)
Q Consensus 26 ~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~~~~~~~~~~v~~~Pt~ 103 (139)
+..+ +.++|++.+ +++ ++|.||++||++|+.+.|.++++++.+. ++.+..+|+++++.++++|+|.++||+
T Consensus 3 v~~l-~~~~f~~~~-----~~~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~Pt~ 75 (101)
T cd02994 3 VVEL-TDSNWTLVL-----EGE-WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPGLSGRFFVTALPTI 75 (101)
T ss_pred eEEc-ChhhHHHHh-----CCC-EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHhHHHHcCCcccCEE
Confidence 3444 466777654 244 6899999999999999999999998875 489999999999999999999999999
Q ss_pred EEEeCCeEEEEEeCC-ChHHHHHHHHH
Q 032496 104 FFLKDGQQVDKLVGA-NKPELQKKVAA 129 (139)
Q Consensus 104 ~~~~~g~~~~~~~g~-~~~~l~~~i~~ 129 (139)
+++++|++ .++.|. +.++|..+|++
T Consensus 76 ~~~~~g~~-~~~~G~~~~~~l~~~i~~ 101 (101)
T cd02994 76 YHAKDGVF-RRYQGPRDKEDLISFIEE 101 (101)
T ss_pred EEeCCCCE-EEecCCCCHHHHHHHHhC
Confidence 99999985 677788 88888888763
No 32
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.86 E-value=8.2e-21 Score=114.13 Aligned_cols=92 Identities=32% Similarity=0.655 Sum_probs=80.2
Q ss_pred chhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCC----CcEEEEEeCCcchhhhhhCCCcceeEEEEE
Q 032496 31 TKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP----SLMFLLVDVDELVEFSTSWDIKATPTFFFL 106 (139)
Q Consensus 31 ~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~----~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~ 106 (139)
+.++|++.+. + ++++|+||++||++|+.+.|.+.++++++. .+.++.+|++.+..++++|+|.++||++++
T Consensus 6 ~~~~f~~~~~----~-~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~ 80 (102)
T cd03005 6 TEDNFDHHIA----E-GNHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQVRGYPTLLLF 80 (102)
T ss_pred CHHHHHHHhh----c-CCEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCCCcCCEEEEE
Confidence 4566777763 2 359999999999999999999999988885 489999999999999999999999999999
Q ss_pred eCCeEEEEEeCC-ChHHHHHHH
Q 032496 107 KDGQQVDKLVGA-NKPELQKKV 127 (139)
Q Consensus 107 ~~g~~~~~~~g~-~~~~l~~~i 127 (139)
.+|+.+.++.|. +.+.|.++|
T Consensus 81 ~~g~~~~~~~G~~~~~~l~~~i 102 (102)
T cd03005 81 KDGEKVDKYKGTRDLDSLKEFV 102 (102)
T ss_pred eCCCeeeEeeCCCCHHHHHhhC
Confidence 999988889898 888777664
No 33
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.86 E-value=2.5e-20 Score=111.27 Aligned_cols=84 Identities=26% Similarity=0.610 Sum_probs=78.2
Q ss_pred hCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCC-CcEEEEEeCCcchhhhhhCCCcceeEEEEEeCCeEEEEEeCC-ChH
Q 032496 44 KEGKIVIANFSATWCGPCRMIAPFFSELSEKYP-SLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGA-NKP 121 (139)
Q Consensus 44 ~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~-~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~ 121 (139)
..+++++++||++||+.|+.+.+.++++.++++ ++.++.+|.++++++..+|++.++|+++++++|+++.+..|. +.+
T Consensus 11 ~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~l~~~~~v~~vPt~~i~~~g~~v~~~~g~~~~~ 90 (97)
T cd02949 11 ESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQEIAEAAGIMGTPTVQFFKDKELVKEISGVKMKS 90 (97)
T ss_pred hCCCeEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHHHHHCCCeeccEEEEEECCeEEEEEeCCccHH
Confidence 468999999999999999999999999999987 499999999999999999999999999999999999999998 888
Q ss_pred HHHHHH
Q 032496 122 ELQKKV 127 (139)
Q Consensus 122 ~l~~~i 127 (139)
+|.++|
T Consensus 91 ~~~~~l 96 (97)
T cd02949 91 EYREFI 96 (97)
T ss_pred HHHHhh
Confidence 888776
No 34
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.85 E-value=2.7e-20 Score=114.00 Aligned_cols=89 Identities=25% Similarity=0.331 Sum_probs=79.5
Q ss_pred hCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhhhhhCCCcceeEEEEEeCCeEEE--EEeCC-Ch
Q 032496 44 KEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVD--KLVGA-NK 120 (139)
Q Consensus 44 ~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~--~~~g~-~~ 120 (139)
.+++.++|+||++||++|+.+.+.+++++..++.+.|+.+|.+++++++.+|+|.++||++++++|+... ++.|. +.
T Consensus 20 ~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d~~~~l~~~~~v~~vPt~~i~~~g~~~~~~~~~G~~~~ 99 (113)
T cd02975 20 KNPVDLVVFSSKEGCQYCEVTKQLLEELSELSDKLKLEIYDFDEDKEKAEKYGVERVPTTIFLQDGGKDGGIRYYGLPAG 99 (113)
T ss_pred CCCeEEEEEeCCCCCCChHHHHHHHHHHHHhcCceEEEEEeCCcCHHHHHHcCCCcCCEEEEEeCCeecceEEEEecCch
Confidence 5677889999999999999999999999998877999999999999999999999999999998765544 57788 88
Q ss_pred HHHHHHHHHHhh
Q 032496 121 PELQKKVAAAVD 132 (139)
Q Consensus 121 ~~l~~~i~~~~~ 132 (139)
.+|..+|..++.
T Consensus 100 ~el~~~i~~i~~ 111 (113)
T cd02975 100 YEFASLIEDIVR 111 (113)
T ss_pred HHHHHHHHHHHh
Confidence 899999998875
No 35
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.85 E-value=4e-20 Score=118.15 Aligned_cols=91 Identities=22% Similarity=0.460 Sum_probs=78.3
Q ss_pred CceEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCC--CcEEEEEeCCcchhhhhhCCCcc--
Q 032496 24 GNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP--SLMFLLVDVDELVEFSTSWDIKA-- 99 (139)
Q Consensus 24 ~~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~~~~~~~~~~v~~-- 99 (139)
..+.++ +.++|++.+.. ..+++++|+||++||++|+.+.|.++++++++. ++.|+.||++++++++.+|+|.+
T Consensus 28 ~~v~~l-~~~~f~~~l~~--~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~la~~~~V~~~~ 104 (152)
T cd02962 28 EHIKYF-TPKTLEEELER--DKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPNVAEKFRVSTSP 104 (152)
T ss_pred CccEEc-CHHHHHHHHHh--cCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHHHHHHcCceecC
Confidence 344444 45677776642 246799999999999999999999999999986 49999999999999999999988
Q ss_pred ----eeEEEEEeCCeEEEEEeC
Q 032496 100 ----TPTFFFLKDGQQVDKLVG 117 (139)
Q Consensus 100 ----~Pt~~~~~~g~~~~~~~g 117 (139)
+||+++|++|+.+.+..|
T Consensus 105 ~v~~~PT~ilf~~Gk~v~r~~G 126 (152)
T cd02962 105 LSKQLPTIILFQGGKEVARRPY 126 (152)
T ss_pred CcCCCCEEEEEECCEEEEEEec
Confidence 999999999999999987
No 36
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.85 E-value=1.9e-20 Score=113.92 Aligned_cols=94 Identities=19% Similarity=0.430 Sum_probs=80.7
Q ss_pred chhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCC-cEEEEEeCCc--chhhhhhCCCcceeEEEEEe
Q 032496 31 TKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVDE--LVEFSTSWDIKATPTFFFLK 107 (139)
Q Consensus 31 ~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~-v~~~~vd~~~--~~~~~~~~~v~~~Pt~~~~~ 107 (139)
+.+++++.+. .++++++|+||++||++|+.+.|.+.++++.+.+ +.++.+|++. +..++++|+|.++||+++|+
T Consensus 6 ~~~~~~~~i~---~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~Pt~~~~~ 82 (109)
T cd03002 6 TPKNFDKVVH---NTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNKPLCGKYGVQGFPTLKVFR 82 (109)
T ss_pred chhhHHHHHh---cCCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccccHHHHHHcCCCcCCEEEEEe
Confidence 4567777774 4578999999999999999999999999999875 8899999998 88999999999999999997
Q ss_pred CCe-----EEEEEeCC-ChHHHHHHH
Q 032496 108 DGQ-----QVDKLVGA-NKPELQKKV 127 (139)
Q Consensus 108 ~g~-----~~~~~~g~-~~~~l~~~i 127 (139)
+|+ ....+.|. +.++|..||
T Consensus 83 ~~~~~~~~~~~~~~G~~~~~~l~~fi 108 (109)
T cd03002 83 PPKKASKHAVEDYNGERSAKAIVDFV 108 (109)
T ss_pred CCCcccccccccccCccCHHHHHHHh
Confidence 775 45667777 888888876
No 37
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.84 E-value=4e-20 Score=110.96 Aligned_cols=95 Identities=21% Similarity=0.466 Sum_probs=83.0
Q ss_pred hhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCC---cEEEEEeCCcchhhhhhCCCcceeEEEEEeC
Q 032496 32 KDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS---LMFLLVDVDELVEFSTSWDIKATPTFFFLKD 108 (139)
Q Consensus 32 ~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~---v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~ 108 (139)
.++|+..+ .++++++|+||++||+.|+.+.+.++++++.+.+ +.++.+|++++..++++|+|.++|+++++++
T Consensus 3 ~~~~~~~~----~~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~P~~~~~~~ 78 (102)
T TIGR01126 3 ASNFDDIV----LSNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDLASRFGVSGFPTIKFFPK 78 (102)
T ss_pred hhhHHHHh----ccCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHHHHhCCCCcCCEEEEecC
Confidence 45566555 3689999999999999999999999999988873 9999999999999999999999999999977
Q ss_pred CeEEEEEeCC-ChHHHHHHHHHH
Q 032496 109 GQQVDKLVGA-NKPELQKKVAAA 130 (139)
Q Consensus 109 g~~~~~~~g~-~~~~l~~~i~~~ 130 (139)
|+....+.|. +.++|..+|++.
T Consensus 79 ~~~~~~~~g~~~~~~l~~~i~~~ 101 (102)
T TIGR01126 79 GKKPVDYEGGRDLEAIVEFVNEK 101 (102)
T ss_pred CCcceeecCCCCHHHHHHHHHhc
Confidence 7756778888 888899998875
No 38
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.84 E-value=1.3e-20 Score=113.82 Aligned_cols=86 Identities=21% Similarity=0.457 Sum_probs=75.3
Q ss_pred HhhCCCEEEEEEeCCCChhhhhhhHhH---HHHHHhCC-CcEEEEEeCCc----chhhhhhCCCcceeEEEEEe--CCeE
Q 032496 42 ASKEGKIVIANFSATWCGPCRMIAPFF---SELSEKYP-SLMFLLVDVDE----LVEFSTSWDIKATPTFFFLK--DGQQ 111 (139)
Q Consensus 42 ~~~~~k~vlv~f~~~~C~~C~~~~~~l---~~~~~~~~-~v~~~~vd~~~----~~~~~~~~~v~~~Pt~~~~~--~g~~ 111 (139)
+..++++++|+||++||++|+.+.+.+ .++.+.+. ++.++.+|+++ ...++++|++.++||+++|+ +|+.
T Consensus 7 ~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~~~~~~g~~ 86 (104)
T cd02953 7 ALAQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGVFGPPTYLFYGPGGEPE 86 (104)
T ss_pred HHHcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEEECCCCCCC
Confidence 336789999999999999999999877 57777776 69999999987 57889999999999999996 8999
Q ss_pred EEEEeCC-ChHHHHHHH
Q 032496 112 VDKLVGA-NKPELQKKV 127 (139)
Q Consensus 112 ~~~~~g~-~~~~l~~~i 127 (139)
+.++.|. +.++|..+|
T Consensus 87 ~~~~~G~~~~~~l~~~l 103 (104)
T cd02953 87 PLRLPGFLTADEFLEAL 103 (104)
T ss_pred CcccccccCHHHHHHHh
Confidence 9999998 888888776
No 39
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.84 E-value=6.3e-20 Score=110.58 Aligned_cols=93 Identities=24% Similarity=0.515 Sum_probs=80.0
Q ss_pred chhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCC---CcEEEEEeCCc--chhhhhhCCCcceeEEEE
Q 032496 31 TKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP---SLMFLLVDVDE--LVEFSTSWDIKATPTFFF 105 (139)
Q Consensus 31 ~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~---~v~~~~vd~~~--~~~~~~~~~v~~~Pt~~~ 105 (139)
+..+++..+ .++++++|+||++||++|+.+.|.+.++++.+. .+.++.+|++. +..++.+|+|.++||+++
T Consensus 6 ~~~~~~~~~----~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~Pt~~~ 81 (104)
T cd02997 6 TDEDFRKFL----KKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKGFPTFKY 81 (104)
T ss_pred chHhHHHHH----hhCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCccccEEEE
Confidence 345666655 356799999999999999999999999988875 38888999998 899999999999999999
Q ss_pred EeCCeEEEEEeCC-ChHHHHHHH
Q 032496 106 LKDGQQVDKLVGA-NKPELQKKV 127 (139)
Q Consensus 106 ~~~g~~~~~~~g~-~~~~l~~~i 127 (139)
+++|+.+.++.|. +.+.+.++|
T Consensus 82 ~~~g~~~~~~~g~~~~~~l~~~l 104 (104)
T cd02997 82 FENGKFVEKYEGERTAEDIIEFM 104 (104)
T ss_pred EeCCCeeEEeCCCCCHHHHHhhC
Confidence 9999988888888 888887764
No 40
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.83 E-value=9e-20 Score=113.61 Aligned_cols=97 Identities=20% Similarity=0.406 Sum_probs=79.8
Q ss_pred HHHHHHhhCC-CEEEEEEeCCCChhhhhhhHhHH---HHHHhCC-CcEEEEEeCCcc-------------hhhhhhCCCc
Q 032496 37 QKMSEASKEG-KIVIANFSATWCGPCRMIAPFFS---ELSEKYP-SLMFLLVDVDEL-------------VEFSTSWDIK 98 (139)
Q Consensus 37 ~~~~~~~~~~-k~vlv~f~~~~C~~C~~~~~~l~---~~~~~~~-~v~~~~vd~~~~-------------~~~~~~~~v~ 98 (139)
+.+..+..++ ++++|.||++||++|+.+.+.+. .+.+.+. ++.++.+|.+.. ..++.+|+|.
T Consensus 4 ~~~~~a~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v~ 83 (125)
T cd02951 4 EDLAEAAADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYRVR 83 (125)
T ss_pred HHHHHHHHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcCCc
Confidence 3445555788 99999999999999999998773 4555543 588889998864 6889999999
Q ss_pred ceeEEEEE-eC-CeEEEEEeCC-ChHHHHHHHHHHhhc
Q 032496 99 ATPTFFFL-KD-GQQVDKLVGA-NKPELQKKVAAAVDS 133 (139)
Q Consensus 99 ~~Pt~~~~-~~-g~~~~~~~g~-~~~~l~~~i~~~~~~ 133 (139)
++||++++ ++ |+++.+..|. +.+.+..+|+.++..
T Consensus 84 ~~Pt~~~~~~~gg~~~~~~~G~~~~~~~~~~l~~~~~~ 121 (125)
T cd02951 84 FTPTVIFLDPEGGKEIARLPGYLPPDEFLAYLEYVQEK 121 (125)
T ss_pred cccEEEEEcCCCCceeEEecCCCCHHHHHHHHHHHHhh
Confidence 99999999 45 6999999998 889999999988654
No 41
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.83 E-value=1.5e-19 Score=108.76 Aligned_cols=94 Identities=19% Similarity=0.420 Sum_probs=79.4
Q ss_pred chhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCC-CcEEEEEeCCcchhhhhhCCCcceeEEEEEeCC
Q 032496 31 TKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP-SLMFLLVDVDELVEFSTSWDIKATPTFFFLKDG 109 (139)
Q Consensus 31 ~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~-~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g 109 (139)
+..++++.+. .++++++|+||++||++|+.+.|.+.++++.++ .+.++.+|++++..++++|+|.++|+++++.+|
T Consensus 6 ~~~~~~~~i~---~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~~~P~~~~~~~~ 82 (103)
T cd03001 6 TDSNFDKKVL---NSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQSLAQQYGVRGFPTIKVFGAG 82 (103)
T ss_pred CHHhHHHHHh---cCCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcchHHHHHHCCCCccCEEEEECCC
Confidence 4566666664 346779999999999999999999999999886 499999999999999999999999999999887
Q ss_pred -eEEEEEeCC-ChHHHHHHH
Q 032496 110 -QQVDKLVGA-NKPELQKKV 127 (139)
Q Consensus 110 -~~~~~~~g~-~~~~l~~~i 127 (139)
.....+.|. +.++|.+|+
T Consensus 83 ~~~~~~~~g~~~~~~l~~~~ 102 (103)
T cd03001 83 KNSPQDYQGGRTAKAIVSAA 102 (103)
T ss_pred CcceeecCCCCCHHHHHHHh
Confidence 444556676 888887775
No 42
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.83 E-value=2.2e-19 Score=111.19 Aligned_cols=93 Identities=22% Similarity=0.284 Sum_probs=74.8
Q ss_pred chhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcch-----------hhhhhCC---
Q 032496 31 TKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELV-----------EFSTSWD--- 96 (139)
Q Consensus 31 ~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~-----------~~~~~~~--- 96 (139)
+.+++.+.+ .+++.++|+|+++|||+|+.+.|.|.++.++. ++.++.+|.+.+. ++.++|+
T Consensus 12 t~~~~~~~i----~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~-~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~ 86 (122)
T TIGR01295 12 TVVRALEAL----DKKETATFFIGRKTCPYCRKFSGTLSGVVAQT-KAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIPT 86 (122)
T ss_pred CHHHHHHHH----HcCCcEEEEEECCCChhHHHHhHHHHHHHHhc-CCcEEEEECCCccCcCcccHHHHHHHHHHcCCcc
Confidence 344555555 56788999999999999999999999999984 5778888888543 4456655
Q ss_pred -CcceeEEEEEeCCeEEEEEeCC--ChHHHHHHHH
Q 032496 97 -IKATPTFFFLKDGQQVDKLVGA--NKPELQKKVA 128 (139)
Q Consensus 97 -v~~~Pt~~~~~~g~~~~~~~g~--~~~~l~~~i~ 128 (139)
+.++||++++++|+.+.+..|. +.++|.+++.
T Consensus 87 ~i~~~PT~v~~k~Gk~v~~~~G~~~~~~~l~~~~~ 121 (122)
T TIGR01295 87 SFMGTPTFVHITDGKQVSVRCGSSTTAQELQDIAA 121 (122)
T ss_pred cCCCCCEEEEEeCCeEEEEEeCCCCCHHHHHHHhh
Confidence 5569999999999999999994 7888888763
No 43
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.83 E-value=1.1e-19 Score=109.73 Aligned_cols=86 Identities=19% Similarity=0.456 Sum_probs=75.1
Q ss_pred hCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCC----CcEEEEEeCCcchhhhhhCCCcceeEEEEEeCCeEEEEEeCC-
Q 032496 44 KEGKIVIANFSATWCGPCRMIAPFFSELSEKYP----SLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGA- 118 (139)
Q Consensus 44 ~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~----~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~- 118 (139)
.++++++|.||++||++|+.+.|.++++++.+. ++.+..+|++..+.++++|+|.++||+++|++|.. ..+.|.
T Consensus 13 ~~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I~~~Pt~~l~~~~~~-~~~~G~~ 91 (104)
T cd03000 13 RKEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGVRGYPTIKLLKGDLA-YNYRGPR 91 (104)
T ss_pred ccCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCCccccEEEEEcCCCc-eeecCCC
Confidence 346899999999999999999999999998873 38889999999999999999999999999977754 557777
Q ss_pred ChHHHHHHHHHH
Q 032496 119 NKPELQKKVAAA 130 (139)
Q Consensus 119 ~~~~l~~~i~~~ 130 (139)
+.+.|.+++.+.
T Consensus 92 ~~~~l~~~~~~~ 103 (104)
T cd03000 92 TKDDIVEFANRV 103 (104)
T ss_pred CHHHHHHHHHhh
Confidence 888898888764
No 44
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.82 E-value=5.6e-19 Score=117.09 Aligned_cols=92 Identities=22% Similarity=0.394 Sum_probs=78.6
Q ss_pred CCCceEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhhhhhCCCccee
Q 032496 22 AGGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATP 101 (139)
Q Consensus 22 ~~~~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P 101 (139)
..+.+..+ +..+|...+..+ .++.+|||+||++||+.|+.+.+.|.+++.+|+.++|+.||.+.. ..+|++.++|
T Consensus 80 ~~G~v~ei-s~~~f~~eV~~a-s~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~~vkFvkI~ad~~---~~~~~i~~lP 154 (192)
T cd02988 80 KFGEVYEI-SKPDYVREVTEA-SKDTWVVVHLYKDGIPLCRLLNQHLSELARKFPDTKFVKIISTQC---IPNYPDKNLP 154 (192)
T ss_pred CCCeEEEe-CHHHHHHHHHhc-CCCCEEEEEEECCCCchHHHHHHHHHHHHHHCCCCEEEEEEhHHh---HhhCCCCCCC
Confidence 45777887 456777666533 234699999999999999999999999999999999999999864 5799999999
Q ss_pred EEEEEeCCeEEEEEeCC
Q 032496 102 TFFFLKDGQQVDKLVGA 118 (139)
Q Consensus 102 t~~~~~~g~~~~~~~g~ 118 (139)
|+++|++|+.+.++.|.
T Consensus 155 Tlliyk~G~~v~~ivG~ 171 (192)
T cd02988 155 TILVYRNGDIVKQFIGL 171 (192)
T ss_pred EEEEEECCEEEEEEeCc
Confidence 99999999999998875
No 45
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=99.81 E-value=7e-19 Score=103.15 Aligned_cols=84 Identities=46% Similarity=0.939 Sum_probs=77.2
Q ss_pred hCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhhhhhCCCcceeEEEEEeCCeEEEEEeCC-ChHH
Q 032496 44 KEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGA-NKPE 122 (139)
Q Consensus 44 ~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~ 122 (139)
..+++++|+||++||++|+.+.+.++++.+..+++.++.+|++.+..++..|++.++|+++++.+|+.+..+.|. +.+.
T Consensus 8 ~~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~~~~~~~g~~~~~~ 87 (93)
T cd02947 8 KSAKPVVVDFWAPWCGPCKAIAPVLEELAEEYPKVKFVKVDVDENPELAEEYGVRSIPTFLFFKNGKEVDRVVGADPKEE 87 (93)
T ss_pred hcCCcEEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEECCCChhHHHhcCcccccEEEEEECCEEEEEEecCCCHHH
Confidence 345899999999999999999999999998877899999999999999999999999999999999999999998 7788
Q ss_pred HHHHH
Q 032496 123 LQKKV 127 (139)
Q Consensus 123 l~~~i 127 (139)
|.++|
T Consensus 88 l~~~i 92 (93)
T cd02947 88 LEEFL 92 (93)
T ss_pred HHHHh
Confidence 87765
No 46
>PTZ00062 glutaredoxin; Provisional
Probab=99.81 E-value=8.9e-19 Score=116.67 Aligned_cols=93 Identities=17% Similarity=0.226 Sum_probs=80.7
Q ss_pred echhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhhhhhCCCcceeEEEEEeCC
Q 032496 30 TTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDG 109 (139)
Q Consensus 30 ~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g 109 (139)
.+.+++.+.+. ...+.+|++||++||+.|+.+.+.+.+++++|+++.|+.||.+ |+|.++|||++|++|
T Consensus 4 ~~~ee~~~~i~---~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~~~F~~V~~d--------~~V~~vPtfv~~~~g 72 (204)
T PTZ00062 4 IKKEEKDKLIE---SNTGKLVLYVKSSKEPEYEQLMDVCNALVEDFPSLEFYVVNLA--------DANNEYGVFEFYQNS 72 (204)
T ss_pred CCHHHHHHHHh---cCCCcEEEEEeCCCCcchHHHHHHHHHHHHHCCCcEEEEEccc--------cCcccceEEEEEECC
Confidence 45566666552 1236789999999999999999999999999999999999987 999999999999999
Q ss_pred eEEEEEeCCChHHHHHHHHHHhhc
Q 032496 110 QQVDKLVGANKPELQKKVAAAVDS 133 (139)
Q Consensus 110 ~~~~~~~g~~~~~l~~~i~~~~~~ 133 (139)
+.+.++.|.+..+|...+..+.+.
T Consensus 73 ~~i~r~~G~~~~~~~~~~~~~~~~ 96 (204)
T PTZ00062 73 QLINSLEGCNTSTLVSFIRGWAQK 96 (204)
T ss_pred EEEeeeeCCCHHHHHHHHHHHcCC
Confidence 999999999999999888876543
No 47
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.80 E-value=6.5e-19 Score=106.08 Aligned_cols=93 Identities=26% Similarity=0.530 Sum_probs=77.9
Q ss_pred chhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCC---cEEEEEeCCcchhhhhhCCCcceeEEEEEe
Q 032496 31 TKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS---LMFLLVDVDELVEFSTSWDIKATPTFFFLK 107 (139)
Q Consensus 31 ~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~---v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~ 107 (139)
+.++|++.+. .++++++|+||++||++|+.+.|.+.++++.+.+ +.++.+|++++ +++..+++.++||+++|.
T Consensus 6 ~~~~f~~~i~---~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-~~~~~~~~~~~Pt~~~~~ 81 (104)
T cd02995 6 VGKNFDEVVL---DSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN-DVPSEFVVDGFPTILFFP 81 (104)
T ss_pred chhhhHHHHh---CCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch-hhhhhccCCCCCEEEEEc
Confidence 4667777664 3468999999999999999999999999998764 89999999987 577889999999999998
Q ss_pred CCe--EEEEEeCC-ChHHHHHHH
Q 032496 108 DGQ--QVDKLVGA-NKPELQKKV 127 (139)
Q Consensus 108 ~g~--~~~~~~g~-~~~~l~~~i 127 (139)
+|+ ...++.|. +.+.|.+||
T Consensus 82 ~~~~~~~~~~~g~~~~~~l~~fi 104 (104)
T cd02995 82 AGDKSNPIKYEGDRTLEDLIKFI 104 (104)
T ss_pred CCCcCCceEccCCcCHHHHHhhC
Confidence 877 55667777 888877764
No 48
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.80 E-value=8.3e-19 Score=104.58 Aligned_cols=92 Identities=24% Similarity=0.526 Sum_probs=78.2
Q ss_pred hhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhC---CCcEEEEEeCCcchhhhhhCCCcceeEEEEEeC
Q 032496 32 KDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKY---PSLMFLLVDVDELVEFSTSWDIKATPTFFFLKD 108 (139)
Q Consensus 32 ~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~---~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~ 108 (139)
.+++.+.+ .++++++|+||++||++|+.+.+.+.++++.+ .++.|+.+|++++..++++|+|.++|+++++.+
T Consensus 5 ~~~~~~~i----~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~ 80 (101)
T cd02961 5 DDNFDELV----KDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGVRGYPTIKLFPN 80 (101)
T ss_pred HHHHHHHH----hCCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHHHHHhCCCCCCCEEEEEcC
Confidence 34555555 45569999999999999999999999999888 369999999999999999999999999999976
Q ss_pred C-eEEEEEeCC-ChHHHHHHH
Q 032496 109 G-QQVDKLVGA-NKPELQKKV 127 (139)
Q Consensus 109 g-~~~~~~~g~-~~~~l~~~i 127 (139)
+ +...++.|. +.+++.+++
T Consensus 81 ~~~~~~~~~g~~~~~~i~~~~ 101 (101)
T cd02961 81 GSKEPVKYEGPRTLESLVEFI 101 (101)
T ss_pred CCcccccCCCCcCHHHHHhhC
Confidence 6 777777777 777777653
No 49
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.80 E-value=1.4e-18 Score=105.79 Aligned_cols=96 Identities=20% Similarity=0.350 Sum_probs=76.2
Q ss_pred chhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCC--CcEEEEEeCCc-chhhhh-hCCCcceeEEEEE
Q 032496 31 TKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP--SLMFLLVDVDE-LVEFST-SWDIKATPTFFFL 106 (139)
Q Consensus 31 ~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~-~~~~~~-~~~v~~~Pt~~~~ 106 (139)
+.++++..+.. ..++++++|.||++||++|+.+.|.+.++++.+. ++.+..+|++. ...++. .|++.++||+++|
T Consensus 7 ~~~~~~~~~~~-~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~v~~~Pti~~f 85 (109)
T cd02993 7 SRAEIEALAKG-ERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQLKSFPTILFF 85 (109)
T ss_pred cHHHHHHHHhh-hhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhhHHhhcCCCcCCEEEEE
Confidence 44566655532 3568999999999999999999999999999886 38899999997 567776 5999999999999
Q ss_pred eC-CeEEEEEeC-C-ChHHHHHHH
Q 032496 107 KD-GQQVDKLVG-A-NKPELQKKV 127 (139)
Q Consensus 107 ~~-g~~~~~~~g-~-~~~~l~~~i 127 (139)
.+ ++....+.| . +.+.|..||
T Consensus 86 ~~~~~~~~~y~g~~~~~~~l~~f~ 109 (109)
T cd02993 86 PKNSRQPIKYPSEQRDVDSLLMFV 109 (109)
T ss_pred cCCCCCceeccCCCCCHHHHHhhC
Confidence 54 455666777 3 777777654
No 50
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.79 E-value=7.5e-19 Score=105.93 Aligned_cols=94 Identities=28% Similarity=0.559 Sum_probs=78.2
Q ss_pred chhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCC---CcEEEEEeCCc-chhhhhhCCCcceeEEEEE
Q 032496 31 TKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP---SLMFLLVDVDE-LVEFSTSWDIKATPTFFFL 106 (139)
Q Consensus 31 ~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~---~v~~~~vd~~~-~~~~~~~~~v~~~Pt~~~~ 106 (139)
+.+++++.+. .++++++++||++||++|+.+.+.+.++++.+. ++.++.+|++. ++.++++|+|.++|++++|
T Consensus 6 ~~~~~~~~~~---~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i~~~P~~~~~ 82 (105)
T cd02998 6 TDSNFDKVVG---DDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVSGFPTLKFF 82 (105)
T ss_pred chhcHHHHhc---CCCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCCCCcCEEEEE
Confidence 4456666542 346799999999999999999999999999875 49999999999 9999999999999999999
Q ss_pred eCC-eEEEEEeCC-ChHHHHHHH
Q 032496 107 KDG-QQVDKLVGA-NKPELQKKV 127 (139)
Q Consensus 107 ~~g-~~~~~~~g~-~~~~l~~~i 127 (139)
.+| +....+.|. +.++|.++|
T Consensus 83 ~~~~~~~~~~~g~~~~~~l~~~i 105 (105)
T cd02998 83 PKGSTEPVKYEGGRDLEDLVKFV 105 (105)
T ss_pred eCCCCCccccCCccCHHHHHhhC
Confidence 655 566667776 888887764
No 51
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.76 E-value=6.5e-18 Score=125.72 Aligned_cols=104 Identities=18% Similarity=0.251 Sum_probs=82.7
Q ss_pred CceEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCC--CcEEEEEeC----------------
Q 032496 24 GNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP--SLMFLLVDV---------------- 85 (139)
Q Consensus 24 ~~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~--~v~~~~vd~---------------- 85 (139)
..+|++...+.-...+.+. ++|++||+||++||++|+.+.|.|++++++++ ++.++.|..
T Consensus 36 ~~lP~f~l~D~dG~~v~ls--kGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~ 113 (521)
T PRK14018 36 HTLSTLKTADNRPASVYLK--KDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWY 113 (521)
T ss_pred CCCCCeEeecCCCceeecc--CCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHH
Confidence 4556665544444444433 78999999999999999999999999999886 577766543
Q ss_pred ------------CcchhhhhhCCCcceeEEEEE-eCCeEEEEEeCC-ChHHHHHHHHH
Q 032496 86 ------------DELVEFSTSWDIKATPTFFFL-KDGQQVDKLVGA-NKPELQKKVAA 129 (139)
Q Consensus 86 ------------~~~~~~~~~~~v~~~Pt~~~~-~~g~~~~~~~g~-~~~~l~~~i~~ 129 (139)
|.+..+.+.|+|.++|+++++ ++|+++.+..|. +.++|.++|+.
T Consensus 114 ~~~~y~~~pV~~D~~~~lak~fgV~giPTt~IIDkdGkIV~~~~G~~~~eeL~a~Ie~ 171 (521)
T PRK14018 114 AGLDYPKLPVLTDNGGTLAQSLNISVYPSWAIIGKDGDVQRIVKGSISEAQALALIRN 171 (521)
T ss_pred HhCCCcccceeccccHHHHHHcCCCCcCeEEEEcCCCeEEEEEeCCCCHHHHHHHHHH
Confidence 344567889999999998666 899999999998 89999988884
No 52
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.75 E-value=2.1e-17 Score=109.40 Aligned_cols=89 Identities=19% Similarity=0.371 Sum_probs=74.3
Q ss_pred CCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcch-----------------------hhhhhCCCccee
Q 032496 45 EGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELV-----------------------EFSTSWDIKATP 101 (139)
Q Consensus 45 ~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~-----------------------~~~~~~~v~~~P 101 (139)
++|+++|+||++||++|+...|.+.++.++ ++.++.|+.++.. .+...|++.++|
T Consensus 67 ~gk~vvv~FwatwC~~C~~e~p~l~~l~~~--~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~P 144 (185)
T PRK15412 67 QGKPVLLNVWATWCPTCRAEHQYLNQLSAQ--GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYGAP 144 (185)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHc--CCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCCCcCC
Confidence 689999999999999999999999999764 6888888875432 134478999999
Q ss_pred EEEEE-eCCeEEEEEeCC-ChHHHHHHHHHHhhccC
Q 032496 102 TFFFL-KDGQQVDKLVGA-NKPELQKKVAAAVDSVV 135 (139)
Q Consensus 102 t~~~~-~~g~~~~~~~g~-~~~~l~~~i~~~~~~~~ 135 (139)
+++++ ++|+++.++.|. +.+++.+.|+.+++...
T Consensus 145 ~t~vid~~G~i~~~~~G~~~~~~l~~~i~~~~~~~~ 180 (185)
T PRK15412 145 ETFLIDGNGIIRYRHAGDLNPRVWESEIKPLWEKYS 180 (185)
T ss_pred eEEEECCCceEEEEEecCCCHHHHHHHHHHHHHHHH
Confidence 66655 899999999998 89999999999887654
No 53
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.74 E-value=4.9e-18 Score=104.51 Aligned_cols=99 Identities=23% Similarity=0.471 Sum_probs=75.4
Q ss_pred HHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCC-CcEEEEEeCCcch-hhhhhCCCcc--eeEEEEE-eC
Q 032496 34 IWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP-SLMFLLVDVDELV-EFSTSWDIKA--TPTFFFL-KD 108 (139)
Q Consensus 34 ~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~-~v~~~~vd~~~~~-~~~~~~~v~~--~Pt~~~~-~~ 108 (139)
++++.+..+..++++++|.||++||++|+.+.+.+.+...... ...|+.++.+.++ ...+.|++.+ +||++++ .+
T Consensus 7 ~~~~al~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~~g~~vPt~~f~~~~ 86 (117)
T cd02959 7 TLEDGIKEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKDEEFSPDGGYIPRILFLDPS 86 (117)
T ss_pred eHHHHHHHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchhhhcccCCCccceEEEECCC
Confidence 4677788787889999999999999999999999988765432 4567777777654 4457888876 9999999 69
Q ss_pred CeEEEEEe---CC-ChHHHHHHHHHHhh
Q 032496 109 GQQVDKLV---GA-NKPELQKKVAAAVD 132 (139)
Q Consensus 109 g~~~~~~~---g~-~~~~l~~~i~~~~~ 132 (139)
|+++.++. |. +...+...|+.+.+
T Consensus 87 Gk~~~~~~~~~~~~~~~~f~~~~~~~~~ 114 (117)
T cd02959 87 GDVHPEIINKKGNPNYKYFYSSAAQVTE 114 (117)
T ss_pred CCCchhhccCCCCccccccCCCHHHHHh
Confidence 99987544 33 55556665655543
No 54
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.74 E-value=3.5e-17 Score=107.26 Aligned_cols=112 Identities=21% Similarity=0.421 Sum_probs=82.5
Q ss_pred ccCCCceEEeechhHHHH--HHHHHh-hCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCc---------
Q 032496 20 EFAGGNVSLVTTKDIWDQ--KMSEAS-KEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDE--------- 87 (139)
Q Consensus 20 ~~~~~~~~~i~~~~~~~~--~~~~~~-~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~--------- 87 (139)
...|..+|++.-.+.... .+.... .++++++|+||++||+.|+.+.|.++++.++ ++.++.++.++
T Consensus 34 ~~vG~~ap~f~l~~~~G~~~~~~~~~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~--~~~vi~V~~~~~~~~~~~~~ 111 (173)
T TIGR00385 34 ALIGKPVPAFPLAALREPLQAYTPEAFIQGKPVLLNVWASWCPPCRAEHPYLNELAKD--GLPIVGVDYKDQSQNALKFL 111 (173)
T ss_pred hhcCCCCCCccccccCCCCcccCHHHhcCCCEEEEEEECCcCHHHHHHHHHHHHHHHc--CCEEEEEECCCChHHHHHHH
Confidence 345566666654332221 233222 3689999999999999999999999999765 57777776532
Q ss_pred --------------chhhhhhCCCcceeEEEEE-eCCeEEEEEeCC-ChHHHHHHHHHHhhc
Q 032496 88 --------------LVEFSTSWDIKATPTFFFL-KDGQQVDKLVGA-NKPELQKKVAAAVDS 133 (139)
Q Consensus 88 --------------~~~~~~~~~v~~~Pt~~~~-~~g~~~~~~~g~-~~~~l~~~i~~~~~~ 133 (139)
...+.+.|++.++|+++++ ++|+++.++.|. +.+++.++|.+++++
T Consensus 112 ~~~~~~f~~v~~D~~~~~~~~~~v~~~P~~~~id~~G~i~~~~~G~~~~~~l~~~l~~~~~~ 173 (173)
T TIGR00385 112 KELGNPYQAILIDPNGKLGLDLGVYGAPETFLVDGNGVILYRHAGPLNNEVWTEGFLPAMEK 173 (173)
T ss_pred HHcCCCCceEEECCCCchHHhcCCeeCCeEEEEcCCceEEEEEeccCCHHHHHHHHHHHhhC
Confidence 2245667899999966655 899999999998 999999999998753
No 55
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.74 E-value=4.3e-17 Score=100.04 Aligned_cols=81 Identities=23% Similarity=0.431 Sum_probs=68.4
Q ss_pred echhHHHHHHHHHhhCCCEEEEEEeC-------CCChhhhhhhHhHHHHHHhCC-CcEEEEEeCCc-------chhhhhh
Q 032496 30 TTKDIWDQKMSEASKEGKIVIANFSA-------TWCGPCRMIAPFFSELSEKYP-SLMFLLVDVDE-------LVEFSTS 94 (139)
Q Consensus 30 ~~~~~~~~~~~~~~~~~k~vlv~f~~-------~~C~~C~~~~~~l~~~~~~~~-~v~~~~vd~~~-------~~~~~~~ 94 (139)
.+.++|.+.+.. .++++++|.||+ +||++|+.+.|.++++..+++ ++.|+.||+++ +.+++..
T Consensus 7 ~~~~~f~~~i~~--~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~ 84 (119)
T cd02952 7 RGYEEFLKLLKS--HEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTD 84 (119)
T ss_pred cCHHHHHHHHHh--cCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhc
Confidence 456666666642 247899999999 999999999999999999998 69999999976 4588999
Q ss_pred CCCc-ceeEEEEEeCCeEE
Q 032496 95 WDIK-ATPTFFFLKDGQQV 112 (139)
Q Consensus 95 ~~v~-~~Pt~~~~~~g~~~ 112 (139)
|+|. ++||++++++|+.+
T Consensus 85 ~~I~~~iPT~~~~~~~~~l 103 (119)
T cd02952 85 PKLTTGVPTLLRWKTPQRL 103 (119)
T ss_pred cCcccCCCEEEEEcCCcee
Confidence 9998 99999999777533
No 56
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=99.74 E-value=6.9e-17 Score=118.92 Aligned_cols=110 Identities=18% Similarity=0.253 Sum_probs=84.9
Q ss_pred cccCCCceEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCC--cEEEEEeCCcch-hh-hhh
Q 032496 19 VEFAGGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS--LMFLLVDVDELV-EF-STS 94 (139)
Q Consensus 19 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~--v~~~~vd~~~~~-~~-~~~ 94 (139)
..+.+..+..+ +.++|+..+... ..++++||.||++||++|+.+.|.++++++++.+ +.|+.+|+|.+. .+ +.+
T Consensus 346 dl~~~~~Vv~L-~~~nf~~~v~~~-~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~~~~~~~ 423 (463)
T TIGR00424 346 DIFDSNNVVSL-SRPGIENLLKLE-ERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQKEFAKQE 423 (463)
T ss_pred cccCCCCeEEC-CHHHHHHHHhhh-cCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCccHHHHHH
Confidence 33444445554 556788777422 4689999999999999999999999999999863 889999999764 34 468
Q ss_pred CCCcceeEEEEEeCCeE-EEEEe-CC-ChHHHHHHHHHH
Q 032496 95 WDIKATPTFFFLKDGQQ-VDKLV-GA-NKPELQKKVAAA 130 (139)
Q Consensus 95 ~~v~~~Pt~~~~~~g~~-~~~~~-g~-~~~~l~~~i~~~ 130 (139)
|+|.++||+++|++|.. ...+. |. +.+.|..||+.+
T Consensus 424 ~~I~~~PTii~Fk~g~~~~~~Y~~g~R~~e~L~~Fv~~~ 462 (463)
T TIGR00424 424 LQLGSFPTILFFPKHSSRPIKYPSEKRDVDSLMSFVNLL 462 (463)
T ss_pred cCCCccceEEEEECCCCCceeCCCCCCCHHHHHHHHHhh
Confidence 99999999999988752 23454 34 899999998765
No 57
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=99.74 E-value=4e-17 Score=123.85 Aligned_cols=107 Identities=21% Similarity=0.457 Sum_probs=91.8
Q ss_pred ceEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhH---HHHHHhCCCcEEEEEeCCc----chhhhhhCCC
Q 032496 25 NVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFF---SELSEKYPSLMFLLVDVDE----LVEFSTSWDI 97 (139)
Q Consensus 25 ~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l---~~~~~~~~~v~~~~vd~~~----~~~~~~~~~v 97 (139)
....+.+.+++++.+..+..++|+|+|+||++||++|+.+.+.+ .++.+.++++.++.+|.++ +.++.++|++
T Consensus 453 ~~~~i~s~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~~~~~v~vDvt~~~~~~~~l~~~~~v 532 (571)
T PRK00293 453 NFQRIKTVAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALADTVLLQADVTANNAEDVALLKHYNV 532 (571)
T ss_pred CceecCCHHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhcCCEEEEEECCCCChhhHHHHHHcCC
Confidence 45677788999999988877899999999999999999998875 6788888889999999975 3678899999
Q ss_pred cceeEEEEE-eCCeEE--EEEeCC-ChHHHHHHHHHHh
Q 032496 98 KATPTFFFL-KDGQQV--DKLVGA-NKPELQKKVAAAV 131 (139)
Q Consensus 98 ~~~Pt~~~~-~~g~~~--~~~~g~-~~~~l~~~i~~~~ 131 (139)
.++||++++ ++|+++ .++.|. +.+++.++++++.
T Consensus 533 ~g~Pt~~~~~~~G~~i~~~r~~G~~~~~~f~~~L~~~~ 570 (571)
T PRK00293 533 LGLPTILFFDAQGQEIPDARVTGFMDAAAFAAHLRQLQ 570 (571)
T ss_pred CCCCEEEEECCCCCCcccccccCCCCHHHHHHHHHHhc
Confidence 999999999 589884 677887 9999999988753
No 58
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.74 E-value=5.7e-17 Score=93.68 Aligned_cols=79 Identities=20% Similarity=0.364 Sum_probs=69.4
Q ss_pred EEEEEeCCCChhhhhhhHhHHHHHHhCC-CcEEEEEeCCcchhhhhhCCCcceeEEEEEeCCeEEEEEeCC-ChHHHHHH
Q 032496 49 VIANFSATWCGPCRMIAPFFSELSEKYP-SLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGA-NKPELQKK 126 (139)
Q Consensus 49 vlv~f~~~~C~~C~~~~~~l~~~~~~~~-~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~ 126 (139)
.+..||++||++|+.+.+.+++++..++ .+.++.+|.+++++++++|++.++||+++ +|+. ++.|. +.+++.++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~vPt~~~--~g~~--~~~G~~~~~~l~~~ 77 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQKAMEYGIMAVPAIVI--NGDV--EFIGAPTKEELVEA 77 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCHHHHHHcCCccCCEEEE--CCEE--EEecCCCHHHHHHH
Confidence 3678999999999999999999998886 48999999999999999999999999987 7764 66687 89999988
Q ss_pred HHHHh
Q 032496 127 VAAAV 131 (139)
Q Consensus 127 i~~~~ 131 (139)
|++++
T Consensus 78 l~~~~ 82 (82)
T TIGR00411 78 IKKRL 82 (82)
T ss_pred HHhhC
Confidence 87753
No 59
>PLN02309 5'-adenylylsulfate reductase
Probab=99.74 E-value=1.2e-16 Score=117.54 Aligned_cols=109 Identities=17% Similarity=0.281 Sum_probs=85.6
Q ss_pred ccCCCceEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCC--CcEEEEEeCC-cchhhhh-hC
Q 032496 20 EFAGGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP--SLMFLLVDVD-ELVEFST-SW 95 (139)
Q Consensus 20 ~~~~~~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~--~v~~~~vd~~-~~~~~~~-~~ 95 (139)
.+....+..+ +.+++++.+... .+++++||+||++||++|+.+.|.+.++++++. ++.|+.+|++ .+..++. +|
T Consensus 341 l~~~~~Vv~L-t~~nfe~ll~~~-~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~la~~~~ 418 (457)
T PLN02309 341 IFNSQNVVAL-SRAGIENLLKLE-NRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKEFAKQEL 418 (457)
T ss_pred ccCCCCcEEC-CHHHHHHHHHhh-cCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchHHHHhhC
Confidence 3444455544 556777666433 568999999999999999999999999999985 4999999999 7778876 69
Q ss_pred CCcceeEEEEEeCCeE-EEEEe-CC-ChHHHHHHHHHH
Q 032496 96 DIKATPTFFFLKDGQQ-VDKLV-GA-NKPELQKKVAAA 130 (139)
Q Consensus 96 ~v~~~Pt~~~~~~g~~-~~~~~-g~-~~~~l~~~i~~~ 130 (139)
+|.++||+++|++|.. ...+. +. +.+.|..||+++
T Consensus 419 ~I~~~PTil~f~~g~~~~v~Y~~~~R~~~~L~~fv~~~ 456 (457)
T PLN02309 419 QLGSFPTILLFPKNSSRPIKYPSEKRDVDSLLSFVNSL 456 (457)
T ss_pred CCceeeEEEEEeCCCCCeeecCCCCcCHHHHHHHHHHh
Confidence 9999999999976652 23344 34 889999999875
No 60
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=2e-17 Score=121.39 Aligned_cols=106 Identities=20% Similarity=0.479 Sum_probs=90.9
Q ss_pred CCceEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCC----CcEEEEEeCCcchhhhhhCCCc
Q 032496 23 GGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP----SLMFLLVDVDELVEFSTSWDIK 98 (139)
Q Consensus 23 ~~~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~----~v~~~~vd~~~~~~~~~~~~v~ 98 (139)
+..+.. .+.++|+..+ ..+..++|.||||||++|++..|.+.+.+.... .+.++.||+.++..++.+|+|.
T Consensus 24 ~~~Vl~-Lt~dnf~~~i----~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~~~~~~~y~v~ 98 (493)
T KOG0190|consen 24 EEDVLV-LTKDNFKETI----NGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEESDLASKYEVR 98 (493)
T ss_pred ccceEE-EecccHHHHh----ccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchhhhhHhhhcCC
Confidence 344444 4677787777 567899999999999999999999999888874 4999999999999999999999
Q ss_pred ceeEEEEEeCCeEEEEEeCC-ChHHHHHHHHHHhhc
Q 032496 99 ATPTFFFLKDGQQVDKLVGA-NKPELQKKVAAAVDS 133 (139)
Q Consensus 99 ~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~i~~~~~~ 133 (139)
++||+-+|+||+....+.|. ..+.+..||.+-.+-
T Consensus 99 gyPTlkiFrnG~~~~~Y~G~r~adgIv~wl~kq~gP 134 (493)
T KOG0190|consen 99 GYPTLKIFRNGRSAQDYNGPREADGIVKWLKKQSGP 134 (493)
T ss_pred CCCeEEEEecCCcceeccCcccHHHHHHHHHhccCC
Confidence 99999999999987777888 999999998876443
No 61
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.73 E-value=2.2e-17 Score=101.24 Aligned_cols=77 Identities=21% Similarity=0.451 Sum_probs=65.8
Q ss_pred chhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCC---C-cEEEEEeCC--cchhhhhhCCCcceeEEE
Q 032496 31 TKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP---S-LMFLLVDVD--ELVEFSTSWDIKATPTFF 104 (139)
Q Consensus 31 ~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~---~-v~~~~vd~~--~~~~~~~~~~v~~~Pt~~ 104 (139)
+.++|...+. ..+++++|.||++||++|+.+.+.++++++++. + +.|..+|++ .+..++++|++.++||++
T Consensus 7 ~~~~f~~~i~---~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~Pt~~ 83 (114)
T cd02992 7 DAASFNSALL---GSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTGYPTLR 83 (114)
T ss_pred CHHhHHHHHh---cCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCCCCEEE
Confidence 5667777775 335799999999999999999999999988764 2 888899975 467899999999999999
Q ss_pred EEeCCe
Q 032496 105 FLKDGQ 110 (139)
Q Consensus 105 ~~~~g~ 110 (139)
+|++|+
T Consensus 84 lf~~~~ 89 (114)
T cd02992 84 YFPPFS 89 (114)
T ss_pred EECCCC
Confidence 998887
No 62
>PTZ00102 disulphide isomerase; Provisional
Probab=99.73 E-value=7.4e-17 Score=120.37 Aligned_cols=102 Identities=24% Similarity=0.543 Sum_probs=87.0
Q ss_pred eEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhC----CCcEEEEEeCCcchhhhhhCCCccee
Q 032496 26 VSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKY----PSLMFLLVDVDELVEFSTSWDIKATP 101 (139)
Q Consensus 26 ~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~----~~v~~~~vd~~~~~~~~~~~~v~~~P 101 (139)
+..+ +.++++..+ .++++++|.||++||++|+.+.|.+.++++.+ +++.|+.+|++++..++++|+|.++|
T Consensus 34 v~~l-~~~~f~~~i----~~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~l~~~~~i~~~P 108 (477)
T PTZ00102 34 VTVL-TDSTFDKFI----TENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEMELAQEFGVRGYP 108 (477)
T ss_pred cEEc-chhhHHHHH----hcCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHHHHHhcCCCccc
Confidence 3443 556676666 45789999999999999999999998887665 25999999999999999999999999
Q ss_pred EEEEEeCCeEEEEEeCC-ChHHHHHHHHHHhhc
Q 032496 102 TFFFLKDGQQVDKLVGA-NKPELQKKVAAAVDS 133 (139)
Q Consensus 102 t~~~~~~g~~~~~~~g~-~~~~l~~~i~~~~~~ 133 (139)
|+++|++|+.+ .+.|. +.+.|.+++.+.+..
T Consensus 109 t~~~~~~g~~~-~y~g~~~~~~l~~~l~~~~~~ 140 (477)
T PTZ00102 109 TIKFFNKGNPV-NYSGGRTADGIVSWIKKLTGP 140 (477)
T ss_pred EEEEEECCceE-EecCCCCHHHHHHHHHHhhCC
Confidence 99999998877 77787 999999999998654
No 63
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.73 E-value=3.2e-17 Score=102.29 Aligned_cols=84 Identities=24% Similarity=0.399 Sum_probs=67.4
Q ss_pred HHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeC-----------------------CcchhhhhhC
Q 032496 39 MSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDV-----------------------DELVEFSTSW 95 (139)
Q Consensus 39 ~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~-----------------------~~~~~~~~~~ 95 (139)
+.++..++++++|+||++||+.|+.+.|.++++.+++ ++.++.++. |.+..+++.|
T Consensus 18 ~~~~~~~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~-~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 96 (127)
T cd03010 18 LTSADLKGKPYLLNVWASWCAPCREEHPVLMALARQG-RVPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGIDL 96 (127)
T ss_pred ccHHHcCCCEEEEEEEcCcCHHHHHHHHHHHHHHHhc-CcEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHHhc
Confidence 4444556899999999999999999999999999887 477777764 3344567789
Q ss_pred CCcceeEEEEE-eCCeEEEEEeCC-ChHHH
Q 032496 96 DIKATPTFFFL-KDGQQVDKLVGA-NKPEL 123 (139)
Q Consensus 96 ~v~~~Pt~~~~-~~g~~~~~~~g~-~~~~l 123 (139)
++.++|+.+++ ++|+++.++.|. +.+.|
T Consensus 97 ~v~~~P~~~~ld~~G~v~~~~~G~~~~~~~ 126 (127)
T cd03010 97 GVYGVPETFLIDGDGIIRYKHVGPLTPEVW 126 (127)
T ss_pred CCCCCCeEEEECCCceEEEEEeccCChHhc
Confidence 99999966555 899999999998 65543
No 64
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.73 E-value=7.3e-17 Score=119.69 Aligned_cols=98 Identities=23% Similarity=0.527 Sum_probs=85.8
Q ss_pred chhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCC----CcEEEEEeCCcchhhhhhCCCcceeEEEEE
Q 032496 31 TKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP----SLMFLLVDVDELVEFSTSWDIKATPTFFFL 106 (139)
Q Consensus 31 ~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~----~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~ 106 (139)
+.++++..+ .++++++|.||++||++|+.+.|.+.++++.+. ++.|+.+|++++.+++++|+|.++||++++
T Consensus 7 ~~~~~~~~i----~~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~ 82 (462)
T TIGR01130 7 TKDNFDDFI----KSHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKDLAQKYGVSGYPTLKIF 82 (462)
T ss_pred CHHHHHHHH----hcCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcHHHHHhCCCccccEEEEE
Confidence 456676666 467899999999999999999999998877653 399999999999999999999999999999
Q ss_pred eCCeE-EEEEeCC-ChHHHHHHHHHHhh
Q 032496 107 KDGQQ-VDKLVGA-NKPELQKKVAAAVD 132 (139)
Q Consensus 107 ~~g~~-~~~~~g~-~~~~l~~~i~~~~~ 132 (139)
++|+. +..+.|. +.+.|.+++.+.+.
T Consensus 83 ~~g~~~~~~~~g~~~~~~l~~~i~~~~~ 110 (462)
T TIGR01130 83 RNGEDSVSDYNGPRDADGIVKYMKKQSG 110 (462)
T ss_pred eCCccceeEecCCCCHHHHHHHHHHhcC
Confidence 99987 7778888 89999999988765
No 65
>PTZ00102 disulphide isomerase; Provisional
Probab=99.73 E-value=1.3e-16 Score=119.11 Aligned_cols=108 Identities=23% Similarity=0.438 Sum_probs=90.0
Q ss_pred CceEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCC---cEEEEEeCCcchhhhhhCCCcce
Q 032496 24 GNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS---LMFLLVDVDELVEFSTSWDIKAT 100 (139)
Q Consensus 24 ~~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~---v~~~~vd~~~~~~~~~~~~v~~~ 100 (139)
+.+..+ ..++|++.+. .++++++|+||++||++|+.+.|.++++++.+.+ +.++.+|++.+...++.|+++++
T Consensus 357 ~~v~~l-~~~~f~~~v~---~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~~~~~~~~v~~~ 432 (477)
T PTZ00102 357 GPVKVV-VGNTFEEIVF---KSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANETPLEEFSWSAF 432 (477)
T ss_pred CCeEEe-cccchHHHHh---cCCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCccchhcCCCccc
Confidence 344444 4677777653 5589999999999999999999999999888753 88999999999999999999999
Q ss_pred eEEEEEeCCeEE-EEEeCC-ChHHHHHHHHHHhhccC
Q 032496 101 PTFFFLKDGQQV-DKLVGA-NKPELQKKVAAAVDSVV 135 (139)
Q Consensus 101 Pt~~~~~~g~~~-~~~~g~-~~~~l~~~i~~~~~~~~ 135 (139)
||++++++|+.+ .++.|. +.+.+.++|++......
T Consensus 433 Pt~~~~~~~~~~~~~~~G~~~~~~l~~~i~~~~~~~~ 469 (477)
T PTZ00102 433 PTILFVKAGERTPIPYEGERTVEGFKEFVNKHATNPF 469 (477)
T ss_pred CeEEEEECCCcceeEecCcCCHHHHHHHHHHcCCCCc
Confidence 999999766544 567887 99999999999876543
No 66
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.72 E-value=1.9e-16 Score=107.16 Aligned_cols=90 Identities=22% Similarity=0.344 Sum_probs=76.1
Q ss_pred CCCEEEEEEeC---CCChhhhhhhHhHHHHHHhCCCcE--EEEEeCCcchhhhhhCCCcceeEEEEEeCCeEEE-EEeCC
Q 032496 45 EGKIVIANFSA---TWCGPCRMIAPFFSELSEKYPSLM--FLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVD-KLVGA 118 (139)
Q Consensus 45 ~~k~vlv~f~~---~~C~~C~~~~~~l~~~~~~~~~v~--~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~-~~~g~ 118 (139)
++...++.|++ +||++|+.+.|.++++++.++++. ++.+|.+++++++++|+|.++||+++|++|+.+. ++.|.
T Consensus 18 ~~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~~~l~~~~~V~~~Pt~~~f~~g~~~~~~~~G~ 97 (215)
T TIGR02187 18 KNPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPEDKEEAEKYGVERVPTTIILEEGKDGGIRYTGI 97 (215)
T ss_pred CCCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcccHHHHHHcCCCccCEEEEEeCCeeeEEEEeec
Confidence 34455666877 999999999999999999997654 5666666999999999999999999999999984 88898
Q ss_pred -ChHHHHHHHHHHhhcc
Q 032496 119 -NKPELQKKVAAAVDSV 134 (139)
Q Consensus 119 -~~~~l~~~i~~~~~~~ 134 (139)
+.+++..+|+.+++..
T Consensus 98 ~~~~~l~~~i~~~~~~~ 114 (215)
T TIGR02187 98 PAGYEFAALIEDIVRVS 114 (215)
T ss_pred CCHHHHHHHHHHHHHhc
Confidence 8889999999886543
No 67
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.71 E-value=9.5e-17 Score=102.86 Aligned_cols=86 Identities=21% Similarity=0.395 Sum_probs=67.3
Q ss_pred CCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcc------------hhh-hhhC---CCcceeEEEEE-e
Q 032496 45 EGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDEL------------VEF-STSW---DIKATPTFFFL-K 107 (139)
Q Consensus 45 ~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~------------~~~-~~~~---~v~~~Pt~~~~-~ 107 (139)
.++..+|+||++||++|+.+.|.++++++++ ++.++.|+.|.. ... ...| ++.++||++++ +
T Consensus 49 l~~~~lvnFWAsWCppCr~e~P~L~~l~~~~-~~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~LID~ 127 (153)
T TIGR02738 49 QDDYALVFFYQSTCPYCHQFAPVLKRFSQQF-GLPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFLVNV 127 (153)
T ss_pred cCCCEEEEEECCCChhHHHHHHHHHHHHHHc-CCcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEEEeC
Confidence 3567799999999999999999999999998 566777776642 222 2345 78999998888 6
Q ss_pred CCeE-EEEEeCC-ChHHHHHHHHHHh
Q 032496 108 DGQQ-VDKLVGA-NKPELQKKVAAAV 131 (139)
Q Consensus 108 ~g~~-~~~~~g~-~~~~l~~~i~~~~ 131 (139)
+|++ .....|. +.+++.+.|.+++
T Consensus 128 ~G~~i~~~~~G~~s~~~l~~~I~~ll 153 (153)
T TIGR02738 128 NTRKAYPVLQGAVDEAELANRMDEIL 153 (153)
T ss_pred CCCEEEEEeecccCHHHHHHHHHHhC
Confidence 7665 5567788 8899998888764
No 68
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=99.70 E-value=1e-16 Score=96.47 Aligned_cols=85 Identities=19% Similarity=0.278 Sum_probs=76.5
Q ss_pred CCEEEEEEeCCCChhhhhhhHhHHHHHHhCCC-cEEEEEeCCcchhhhhhCCCc--ceeEEEEEeC--CeEEEEEeCC-C
Q 032496 46 GKIVIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVDELVEFSTSWDIK--ATPTFFFLKD--GQQVDKLVGA-N 119 (139)
Q Consensus 46 ~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~-v~~~~vd~~~~~~~~~~~~v~--~~Pt~~~~~~--g~~~~~~~g~-~ 119 (139)
++++++.|+++||+.|..+.+.++++++++.+ +.|+.+|.++++.++..|++. ++|+++++++ |+......+. +
T Consensus 12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~~~~~~~~i~~~~~P~~~~~~~~~~~k~~~~~~~~~ 91 (103)
T cd02982 12 GKPLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADDFGRHLEYFGLKEEDLPVIAIINLSDGKKYLMPEEELT 91 (103)
T ss_pred CCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhhHHHHHHcCCChhhCCEEEEEecccccccCCCccccC
Confidence 78999999999999999999999999999975 999999999999999999999 9999999977 6665555565 8
Q ss_pred hHHHHHHHHHH
Q 032496 120 KPELQKKVAAA 130 (139)
Q Consensus 120 ~~~l~~~i~~~ 130 (139)
.+.|.++|.++
T Consensus 92 ~~~l~~fi~~~ 102 (103)
T cd02982 92 AESLEEFVEDF 102 (103)
T ss_pred HHHHHHHHHhh
Confidence 89999998875
No 69
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=99.70 E-value=8.6e-17 Score=98.19 Aligned_cols=84 Identities=26% Similarity=0.562 Sum_probs=65.0
Q ss_pred hCCCEEEEEEeCCCChhhhhhhHhHHH---HHHhCC-CcEEEEEeCCcc--------------------hhhhhhCCCcc
Q 032496 44 KEGKIVIANFSATWCGPCRMIAPFFSE---LSEKYP-SLMFLLVDVDEL--------------------VEFSTSWDIKA 99 (139)
Q Consensus 44 ~~~k~vlv~f~~~~C~~C~~~~~~l~~---~~~~~~-~v~~~~vd~~~~--------------------~~~~~~~~v~~ 99 (139)
.++++++++||++||++|+.+.+.+.. +...+. ++.++.++++.. .++.++|+|.+
T Consensus 3 ~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~g 82 (112)
T PF13098_consen 3 GNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVNG 82 (112)
T ss_dssp TTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--S
T ss_pred CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCCc
Confidence 468999999999999999999998875 444433 477888888643 35788999999
Q ss_pred eeEEEEE-eCCeEEEEEeCC-ChHHHHHHH
Q 032496 100 TPTFFFL-KDGQQVDKLVGA-NKPELQKKV 127 (139)
Q Consensus 100 ~Pt~~~~-~~g~~~~~~~g~-~~~~l~~~i 127 (139)
+||++++ .+|+++.++.|. +.++|.++|
T Consensus 83 tPt~~~~d~~G~~v~~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 83 TPTIVFLDKDGKIVYRIPGYLSPEELLKML 112 (112)
T ss_dssp SSEEEECTTTSCEEEEEESS--HHHHHHHH
T ss_pred cCEEEEEcCCCCEEEEecCCCCHHHHHhhC
Confidence 9999999 699999999999 889988765
No 70
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=99.69 E-value=1.3e-15 Score=105.99 Aligned_cols=93 Identities=20% Similarity=0.261 Sum_probs=75.7
Q ss_pred HHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCc-----------chhhhhhCCCcceeEEEEEe
Q 032496 39 MSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDE-----------LVEFSTSWDIKATPTFFFLK 107 (139)
Q Consensus 39 ~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~-----------~~~~~~~~~v~~~Pt~~~~~ 107 (139)
......+++++||+||++||++|+.+.|.|.+++++++ +.++.|+.|. +..++++|||.++|+++++.
T Consensus 159 ~~l~~l~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg-~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~ 237 (271)
T TIGR02740 159 RVMKDLAKKSGLFFFFKSDCPYCHQQAPILQAFEDRYG-IEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLAD 237 (271)
T ss_pred HHHHHhcCCeEEEEEECCCCccHHHHhHHHHHHHHHcC-cEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEE
Confidence 44455678999999999999999999999999999984 7777777764 35688999999999999995
Q ss_pred C-C-eEEEEEeCC-ChHHHHHHHHHHhh
Q 032496 108 D-G-QQVDKLVGA-NKPELQKKVAAAVD 132 (139)
Q Consensus 108 ~-g-~~~~~~~g~-~~~~l~~~i~~~~~ 132 (139)
. | ++.....|. +.++|.+.|..+..
T Consensus 238 ~~~~~v~~v~~G~~s~~eL~~~i~~~a~ 265 (271)
T TIGR02740 238 PDPNQFTPIGFGVMSADELVDRILLAAH 265 (271)
T ss_pred CCCCEEEEEEeCCCCHHHHHHHHHHHhc
Confidence 4 4 444455687 99999998887754
No 71
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.68 E-value=2.9e-16 Score=102.75 Aligned_cols=92 Identities=30% Similarity=0.588 Sum_probs=77.4
Q ss_pred HHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCC--cEEEEEeCCc----------------------chhhhhh
Q 032496 39 MSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS--LMFLLVDVDE----------------------LVEFSTS 94 (139)
Q Consensus 39 ~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~--v~~~~vd~~~----------------------~~~~~~~ 94 (139)
+.+...++++++|+||++||+.|+...+.+.++++++++ +.++.++.+. +..+.+.
T Consensus 54 ~~l~~~~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 133 (173)
T PRK03147 54 IELKDLKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVIDA 133 (173)
T ss_pred EeHHHcCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHHH
Confidence 444445689999999999999999999999999999863 8888888753 3466789
Q ss_pred CCCcceeEEEEE-eCCeEEEEEeCC-ChHHHHHHHHHH
Q 032496 95 WDIKATPTFFFL-KDGQQVDKLVGA-NKPELQKKVAAA 130 (139)
Q Consensus 95 ~~v~~~Pt~~~~-~~g~~~~~~~g~-~~~~l~~~i~~~ 130 (139)
|++..+|+++++ ++|+++..+.|. +.+++.++++++
T Consensus 134 ~~v~~~P~~~lid~~g~i~~~~~g~~~~~~l~~~l~~~ 171 (173)
T PRK03147 134 YGVGPLPTTFLIDKDGKVVKVITGEMTEEQLEEYLEKI 171 (173)
T ss_pred cCCCCcCeEEEECCCCcEEEEEeCCCCHHHHHHHHHHh
Confidence 999999988877 799999888888 888888888765
No 72
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=99.67 E-value=5.1e-16 Score=94.63 Aligned_cols=94 Identities=12% Similarity=0.220 Sum_probs=73.9
Q ss_pred echhHHHHHHHHHhhCCCEEEEEEeC--CCCh---hhhhhhHhHHHHHHhCCCcEEEEEeC-----CcchhhhhhCCCc-
Q 032496 30 TTKDIWDQKMSEASKEGKIVIANFSA--TWCG---PCRMIAPFFSELSEKYPSLMFLLVDV-----DELVEFSTSWDIK- 98 (139)
Q Consensus 30 ~~~~~~~~~~~~~~~~~k~vlv~f~~--~~C~---~C~~~~~~l~~~~~~~~~v~~~~vd~-----~~~~~~~~~~~v~- 98 (139)
.+.++|++.+ .+++.+||.||+ |||+ +|..+.|.+.+.+. .+.+..||+ .++.+++++|+|.
T Consensus 6 L~~~nF~~~v----~~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~---~v~lakVd~~d~~~~~~~~L~~~y~I~~ 78 (116)
T cd03007 6 LDTVTFYKVI----PKFKYSLVKFDTAYPYGEKHEAFTRLAESSASATD---DLLVAEVGIKDYGEKLNMELGERYKLDK 78 (116)
T ss_pred CChhhHHHHH----hcCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcC---ceEEEEEecccccchhhHHHHHHhCCCc
Confidence 4677888877 567899999999 8888 77777776655433 388999999 4678899999999
Q ss_pred -ceeEEEEEeCCe--EEEEEeC--CChHHHHHHHHHH
Q 032496 99 -ATPTFFFLKDGQ--QVDKLVG--ANKPELQKKVAAA 130 (139)
Q Consensus 99 -~~Pt~~~~~~g~--~~~~~~g--~~~~~l~~~i~~~ 130 (139)
++||+.+|.+|. ....+.| .+.+.|.++|.+.
T Consensus 79 ~gyPTl~lF~~g~~~~~~~Y~G~~r~~~~lv~~v~~~ 115 (116)
T cd03007 79 ESYPVIYLFHGGDFENPVPYSGADVTVDALQRFLKGN 115 (116)
T ss_pred CCCCEEEEEeCCCcCCCccCCCCcccHHHHHHHHHhc
Confidence 999999998884 2234556 4888898888753
No 73
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.67 E-value=6.2e-16 Score=98.17 Aligned_cols=74 Identities=22% Similarity=0.436 Sum_probs=60.6
Q ss_pred HHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCC---------CcEEEEEeCCcc-----------------------
Q 032496 41 EASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP---------SLMFLLVDVDEL----------------------- 88 (139)
Q Consensus 41 ~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~---------~v~~~~vd~~~~----------------------- 88 (139)
++..++|+++|+|||+||++|+.+.|.|.++++++. ++.++.|+.|+.
T Consensus 20 ls~~kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~ 99 (146)
T cd03008 20 VARLENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDE 99 (146)
T ss_pred HHHhCCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccch
Confidence 344679999999999999999999999999876442 488888887642
Q ss_pred --hhhhhhCCCcceeEEEEE-eCCeEEEE
Q 032496 89 --VEFSTSWDIKATPTFFFL-KDGQQVDK 114 (139)
Q Consensus 89 --~~~~~~~~v~~~Pt~~~~-~~g~~~~~ 114 (139)
..+.+.|++.++|+++++ .+|+++.+
T Consensus 100 ~~~~l~~~y~v~~iPt~vlId~~G~Vv~~ 128 (146)
T cd03008 100 FRRELEAQFSVEELPTVVVLKPDGDVLAA 128 (146)
T ss_pred HHHHHHHHcCCCCCCEEEEECCCCcEEee
Confidence 135678999999998888 79998876
No 74
>PHA02125 thioredoxin-like protein
Probab=99.66 E-value=2.2e-15 Score=85.77 Aligned_cols=70 Identities=33% Similarity=0.719 Sum_probs=59.0
Q ss_pred EEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhhhhhCCCcceeEEEEEeCCeEEEEEeCC--ChHHHHHHH
Q 032496 50 IANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGA--NKPELQKKV 127 (139)
Q Consensus 50 lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~--~~~~l~~~i 127 (139)
+++||++||++|+.+.|.|+++ .+.++.+|.+++.+++++|+|.++||++ +|+.+.++.|. +..+|.+.|
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~-----~~~~~~vd~~~~~~l~~~~~v~~~PT~~---~g~~~~~~~G~~~~~~~l~~~~ 73 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANV-----EYTYVDVDTDEGVELTAKHHIRSLPTLV---NTSTLDRFTGVPRNVAELKEKL 73 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHH-----hheEEeeeCCCCHHHHHHcCCceeCeEE---CCEEEEEEeCCCCcHHHHHHHh
Confidence 7899999999999999999765 2568899999999999999999999987 78888888887 335555543
No 75
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=99.65 E-value=2.8e-15 Score=92.89 Aligned_cols=94 Identities=16% Similarity=0.187 Sum_probs=71.2
Q ss_pred HHHHHhhCCCEEEEEEeCCCChhhhhhhHh-H--HHHHHhC-CCcEEEEEeCCcchhhhh--------hCCCcceeEEEE
Q 032496 38 KMSEASKEGKIVIANFSATWCGPCRMIAPF-F--SELSEKY-PSLMFLLVDVDELVEFST--------SWDIKATPTFFF 105 (139)
Q Consensus 38 ~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~-l--~~~~~~~-~~v~~~~vd~~~~~~~~~--------~~~v~~~Pt~~~ 105 (139)
.+..+..++|+++|+|+++||++|+.|.+. + .++.+.. .++.++.+|.++.+++.+ .|++.++|++++
T Consensus 7 al~~Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt~vf 86 (124)
T cd02955 7 AFEKARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPLNVF 86 (124)
T ss_pred HHHHHHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCEEEE
Confidence 355666789999999999999999999763 3 4566553 468899999998777654 368999999999
Q ss_pred E-eCCeEEEEEeCC------ChHHHHHHHHHHh
Q 032496 106 L-KDGQQVDKLVGA------NKPELQKKVAAAV 131 (139)
Q Consensus 106 ~-~~g~~~~~~~g~------~~~~l~~~i~~~~ 131 (139)
+ .+|+++....+. +...+.++++++.
T Consensus 87 l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (124)
T cd02955 87 LTPDLKPFFGGTYFPPEDRYGRPGFKTVLEKIR 119 (124)
T ss_pred ECCCCCEEeeeeecCCCCcCCCcCHHHHHHHHH
Confidence 9 899999776554 2234666655553
No 76
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.65 E-value=1.8e-15 Score=102.42 Aligned_cols=81 Identities=12% Similarity=0.272 Sum_probs=71.1
Q ss_pred CCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhhhhhCCCcceeEEEEEeCCeEEEEEeCC-ChHHHH
Q 032496 46 GKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGA-NKPELQ 124 (139)
Q Consensus 46 ~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~l~ 124 (139)
+..+++.||++||++|+.+.+.+++++.+++++.+..+|.+++++++++|+|.++||++++++|+. +.|. ..++|.
T Consensus 133 ~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~~~~~~~~~~~V~~vPtl~i~~~~~~---~~G~~~~~~l~ 209 (215)
T TIGR02187 133 EPVRIEVFVTPTCPYCPYAVLMAHKFALANDKILGEMIEANENPDLAEKYGVMSVPKIVINKGVEE---FVGAYPEEQFL 209 (215)
T ss_pred CCcEEEEEECCCCCCcHHHHHHHHHHHHhcCceEEEEEeCCCCHHHHHHhCCccCCEEEEecCCEE---EECCCCHHHHH
Confidence 445556699999999999999999999988889999999999999999999999999999988863 6687 888888
Q ss_pred HHHHH
Q 032496 125 KKVAA 129 (139)
Q Consensus 125 ~~i~~ 129 (139)
++|..
T Consensus 210 ~~l~~ 214 (215)
T TIGR02187 210 EYILS 214 (215)
T ss_pred HHHHh
Confidence 88764
No 77
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.64 E-value=1.7e-15 Score=89.86 Aligned_cols=66 Identities=38% Similarity=0.727 Sum_probs=55.1
Q ss_pred CCEEEEEEeCCCChhhhhhhHhHHHHHHhCC---CcEEEEEeCCcc-------------------------hhhhhhCCC
Q 032496 46 GKIVIANFSATWCGPCRMIAPFFSELSEKYP---SLMFLLVDVDEL-------------------------VEFSTSWDI 97 (139)
Q Consensus 46 ~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~---~v~~~~vd~~~~-------------------------~~~~~~~~v 97 (139)
||+++|+||++||+.|+...|.|.+++++++ ++.++.|+.|+. ..+.+.|++
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i 80 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGI 80 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCC
Confidence 6899999999999999999999999999999 599999988753 236778999
Q ss_pred cceeEEEEE-eCCeE
Q 032496 98 KATPTFFFL-KDGQQ 111 (139)
Q Consensus 98 ~~~Pt~~~~-~~g~~ 111 (139)
.++|+++++ ++|++
T Consensus 81 ~~iP~~~lld~~G~I 95 (95)
T PF13905_consen 81 NGIPTLVLLDPDGKI 95 (95)
T ss_dssp TSSSEEEEEETTSBE
T ss_pred CcCCEEEEECCCCCC
Confidence 999999988 77764
No 78
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.64 E-value=1.3e-15 Score=95.70 Aligned_cols=79 Identities=30% Similarity=0.538 Sum_probs=62.9
Q ss_pred HHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCC----CcEEEEEeCCcch-----------------------
Q 032496 37 QKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP----SLMFLLVDVDELV----------------------- 89 (139)
Q Consensus 37 ~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~----~v~~~~vd~~~~~----------------------- 89 (139)
+.+.++..++|+++|+||++||+.|+...|.++++++++. ++.++.++.+...
T Consensus 8 ~~v~l~~~~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~ 87 (132)
T cd02964 8 GVVPVSALEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEEL 87 (132)
T ss_pred ccccHHHhCCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHH
Confidence 3455556789999999999999999999999999887764 4677777776432
Q ss_pred --hhhhhCCCcceeEEEEE-eCCeEEEEE
Q 032496 90 --EFSTSWDIKATPTFFFL-KDGQQVDKL 115 (139)
Q Consensus 90 --~~~~~~~v~~~Pt~~~~-~~g~~~~~~ 115 (139)
.+.+.|++.++|+++++ ++|+++.+.
T Consensus 88 ~~~~~~~~~v~~iPt~~lid~~G~iv~~~ 116 (132)
T cd02964 88 RELLEKQFKVEGIPTLVVLKPDGDVVTTN 116 (132)
T ss_pred HHHHHHHcCCCCCCEEEEECCCCCEEchh
Confidence 34567999999999988 689887653
No 79
>PTZ00056 glutathione peroxidase; Provisional
Probab=99.64 E-value=1.1e-15 Score=102.17 Aligned_cols=111 Identities=22% Similarity=0.267 Sum_probs=80.3
Q ss_pred CceEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCC--CcEEEEEeCCc-----------chh
Q 032496 24 GNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP--SLMFLLVDVDE-----------LVE 90 (139)
Q Consensus 24 ~~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~-----------~~~ 90 (139)
..++++...+...+.+.+...++|++||.||++||+.|+...|.|.++++++. ++.++.|++++ ...
T Consensus 17 ~~~pdf~l~d~~G~~vsL~~~kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~d~~e~~~~ 96 (199)
T PTZ00056 17 KSIYDYTVKTLEGTTVPMSSLKNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTSQFLNQEFPNTKDIRK 96 (199)
T ss_pred CCCCceEEECCCCCEEeHHHhCCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecchhccCCCCCCHHHHHH
Confidence 34455544333344456666689999999999999999999999999999986 48889887631 112
Q ss_pred hhhhCCC------------------------------------ccee----EEEEEeCCeEEEEEeCC-ChHHHHHHHHH
Q 032496 91 FSTSWDI------------------------------------KATP----TFFFLKDGQQVDKLVGA-NKPELQKKVAA 129 (139)
Q Consensus 91 ~~~~~~v------------------------------------~~~P----t~~~~~~g~~~~~~~g~-~~~~l~~~i~~ 129 (139)
+.+++++ ..+| ++++.++|+++.++.|. +.+.+.+.|.+
T Consensus 97 f~~~~~~~fpvl~d~~v~g~~~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~~~g~~~~~~l~~~I~~ 176 (199)
T PTZ00056 97 FNDKNKIKYNFFEPIEVNGENTHELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAYFSPRTEPLELEKKIAE 176 (199)
T ss_pred HHHHcCCCceeeeeeeccCCccCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEEEeCCCCCHHHHHHHHHH
Confidence 2333322 1223 55666999999999888 88899999999
Q ss_pred Hhhcc
Q 032496 130 AVDSV 134 (139)
Q Consensus 130 ~~~~~ 134 (139)
+++..
T Consensus 177 ll~~~ 181 (199)
T PTZ00056 177 LLGVK 181 (199)
T ss_pred HHHHH
Confidence 88764
No 80
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.63 E-value=2.1e-15 Score=94.50 Aligned_cols=76 Identities=33% Similarity=0.618 Sum_probs=61.5
Q ss_pred HHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCC----CcEEEEEeCCcc------------------------hh
Q 032496 39 MSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP----SLMFLLVDVDEL------------------------VE 90 (139)
Q Consensus 39 ~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~----~v~~~~vd~~~~------------------------~~ 90 (139)
+.+...++|++||+||++||+.|+.+.|.+.++++++. ++.++.++.|.. ..
T Consensus 11 v~l~~~~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T cd03009 11 VPVSSLEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSR 90 (131)
T ss_pred ccHHHhCCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHH
Confidence 44445678999999999999999999999998877763 467777776633 34
Q ss_pred hhhhCCCcceeEEEEE-eCCeEEEE
Q 032496 91 FSTSWDIKATPTFFFL-KDGQQVDK 114 (139)
Q Consensus 91 ~~~~~~v~~~Pt~~~~-~~g~~~~~ 114 (139)
+++.|++.++|+++++ ++|+++.+
T Consensus 91 ~~~~~~v~~~P~~~lid~~G~i~~~ 115 (131)
T cd03009 91 LNRTFKIEGIPTLIILDADGEVVTT 115 (131)
T ss_pred HHHHcCCCCCCEEEEECCCCCEEcc
Confidence 6778999999999999 69988765
No 81
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=99.63 E-value=3e-15 Score=83.31 Aligned_cols=62 Identities=15% Similarity=0.328 Sum_probs=56.5
Q ss_pred EEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhhhhhCCCcceeEEEEEeCCeEEE
Q 032496 50 IANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVD 113 (139)
Q Consensus 50 lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~ 113 (139)
++.|+++||++|+.+.+.++++...++++.+..+|.+++++++++|++.++|++++ +|+.+.
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~id~~~~~~l~~~~~i~~vPti~i--~~~~~~ 64 (67)
T cd02973 3 IEVFVSPTCPYCPDAVQAANRIAALNPNISAEMIDAAEFPDLADEYGVMSVPAIVI--NGKVEF 64 (67)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHhCCceEEEEEEcccCHhHHHHcCCcccCEEEE--CCEEEE
Confidence 67899999999999999999998888889999999999999999999999999987 666544
No 82
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=99.63 E-value=8e-16 Score=98.10 Aligned_cols=97 Identities=33% Similarity=0.581 Sum_probs=74.3
Q ss_pred CCCceEEeechh--HHHHHHHHHhhCCCEEEEEEeCC-CChhhhhhhHhHHHHHHhCC--CcEEEEEeCCcc--------
Q 032496 22 AGGNVSLVTTKD--IWDQKMSEASKEGKIVIANFSAT-WCGPCRMIAPFFSELSEKYP--SLMFLLVDVDEL-------- 88 (139)
Q Consensus 22 ~~~~~~~i~~~~--~~~~~~~~~~~~~k~vlv~f~~~-~C~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~~-------- 88 (139)
.|..+|++.... ...+.+.+...++|+++|.||+. ||++|+...|.+.++++.+. ++.++.+..+.+
T Consensus 2 ~G~~~P~~~~~~~~~~g~~~~l~~~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~ 81 (146)
T PF08534_consen 2 VGDKAPDFSLKDLDLDGKPVSLSDFKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLK 81 (146)
T ss_dssp TTSB--CCEEEEEETTSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHH
T ss_pred CCCCCCCeEEEeecCCCCEecHHHhCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHH
Confidence 345555555422 44455666667899999999999 99999999999999988854 588888876532
Q ss_pred -------------hhhhhhCCCc---------ceeEEEEE-eCCeEEEEEeCC
Q 032496 89 -------------VEFSTSWDIK---------ATPTFFFL-KDGQQVDKLVGA 118 (139)
Q Consensus 89 -------------~~~~~~~~v~---------~~Pt~~~~-~~g~~~~~~~g~ 118 (139)
..+.+.|++. ++|+++++ ++|+++....|.
T Consensus 82 ~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~P~~~lId~~G~V~~~~~g~ 134 (146)
T PF08534_consen 82 KYGINFPVLSDPDGALAKALGVTIMEDPGNGFGIPTTFLIDKDGKVVYRHVGP 134 (146)
T ss_dssp HTTTTSEEEEETTSHHHHHTTCEEECCTTTTSSSSEEEEEETTSBEEEEEESS
T ss_pred hhCCCceEEechHHHHHHHhCCccccccccCCeecEEEEEECCCEEEEEEeCC
Confidence 3567789988 99987776 999999999988
No 83
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=99.62 E-value=3e-15 Score=101.94 Aligned_cols=113 Identities=22% Similarity=0.289 Sum_probs=85.1
Q ss_pred ccCCCceEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCC--CcEEEEEeCCc--------c-
Q 032496 20 EFAGGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP--SLMFLLVDVDE--------L- 88 (139)
Q Consensus 20 ~~~~~~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~--------~- 88 (139)
...+..++++...+...+.+.+...++|++||.||++||+.|....|.|.+++++|. ++.++.|+++. .
T Consensus 73 ~~~g~~aPdF~l~d~~G~~vsLsd~kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d~~~~~e~~s~~ 152 (236)
T PLN02399 73 AATEKSVHDFTVKDIDGKDVALSKFKGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNP 152 (236)
T ss_pred hhcCCCCCceEEECCCCCEEeHHHhCCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecccccccCCCCHH
Confidence 345667777776555555666676789999999999999999999999999999996 48898888631 1
Q ss_pred --hhhh-hhCC----------------------------------CcceeEEEEE-eCCeEEEEEeCC-ChHHHHHHHHH
Q 032496 89 --VEFS-TSWD----------------------------------IKATPTFFFL-KDGQQVDKLVGA-NKPELQKKVAA 129 (139)
Q Consensus 89 --~~~~-~~~~----------------------------------v~~~Pt~~~~-~~g~~~~~~~g~-~~~~l~~~i~~ 129 (139)
..++ ++++ +...|+.+++ ++|+++.++.|. +.++|++.|++
T Consensus 153 ei~~f~~~~~g~~fPvl~~~D~~G~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~G~~~~~~le~~I~~ 232 (236)
T PLN02399 153 EIKQFACTRFKAEFPIFDKVDVNGPSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYPPTTSPFQIEKDIQK 232 (236)
T ss_pred HHHHHHHHhcCCCCccccccCCCcchhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEECCCCCHHHHHHHHHH
Confidence 1111 2221 1224766666 999999999999 88999999998
Q ss_pred Hhh
Q 032496 130 AVD 132 (139)
Q Consensus 130 ~~~ 132 (139)
+++
T Consensus 233 lL~ 235 (236)
T PLN02399 233 LLA 235 (236)
T ss_pred Hhc
Confidence 874
No 84
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.62 E-value=4e-15 Score=119.53 Aligned_cols=92 Identities=25% Similarity=0.406 Sum_probs=77.8
Q ss_pred hhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCC--cEEEEEeC---C------------------------cchhhhh
Q 032496 43 SKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS--LMFLLVDV---D------------------------ELVEFST 93 (139)
Q Consensus 43 ~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~--v~~~~vd~---~------------------------~~~~~~~ 93 (139)
..++|++||+||++||++|+...|.|++++++|++ +.++.|.. + ....+.+
T Consensus 417 ~lkGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~ 496 (1057)
T PLN02919 417 DLKGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWR 496 (1057)
T ss_pred hcCCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHH
Confidence 35799999999999999999999999999999974 67777742 2 2334667
Q ss_pred hCCCcceeEEEEE-eCCeEEEEEeCC-ChHHHHHHHHHHhhcc
Q 032496 94 SWDIKATPTFFFL-KDGQQVDKLVGA-NKPELQKKVAAAVDSV 134 (139)
Q Consensus 94 ~~~v~~~Pt~~~~-~~g~~~~~~~g~-~~~~l~~~i~~~~~~~ 134 (139)
+|+|.++|+++++ ++|+++.++.|. ..+.|.++|+.++...
T Consensus 497 ~~~V~~iPt~ilid~~G~iv~~~~G~~~~~~l~~~l~~~l~~~ 539 (1057)
T PLN02919 497 ELGVSSWPTFAVVSPNGKLIAQLSGEGHRKDLDDLVEAALQYY 539 (1057)
T ss_pred hcCCCccceEEEECCCCeEEEEEecccCHHHHHHHHHHHHHhh
Confidence 8999999999999 899999999998 8899999999887643
No 85
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=99.61 E-value=2.2e-14 Score=87.94 Aligned_cols=100 Identities=15% Similarity=0.248 Sum_probs=81.7
Q ss_pred hHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhH---HHHHHhCC-CcEEEEEeCC--cchhhhhhCCCcceeEEEEE
Q 032496 33 DIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFF---SELSEKYP-SLMFLLVDVD--ELVEFSTSWDIKATPTFFFL 106 (139)
Q Consensus 33 ~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l---~~~~~~~~-~v~~~~vd~~--~~~~~~~~~~v~~~Pt~~~~ 106 (139)
.++++.+..+..++|+++|+|+++||++|+.+...+ .++.+... ++.++.+|.+ +...++..|++.++|+++++
T Consensus 4 gs~~~a~~~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i 83 (114)
T cd02958 4 GSFEDAKQEAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSSEGQRFLQSYKVDKYPHIAII 83 (114)
T ss_pred CCHHHHHHHHHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCccHHHHHHHhCccCCCeEEEE
Confidence 456778888888899999999999999999987543 44444443 4667777776 45678899999999999999
Q ss_pred -e-CCeEEEEEeCC-ChHHHHHHHHHHhh
Q 032496 107 -K-DGQQVDKLVGA-NKPELQKKVAAAVD 132 (139)
Q Consensus 107 -~-~g~~~~~~~g~-~~~~l~~~i~~~~~ 132 (139)
. +|+++.+..|. ++++|...|++.+.
T Consensus 84 ~~~~g~~l~~~~G~~~~~~f~~~L~~~~~ 112 (114)
T cd02958 84 DPRTGEVLKVWSGNITPEDLLSQLIEFLE 112 (114)
T ss_pred eCccCcEeEEEcCCCCHHHHHHHHHHHHh
Confidence 5 79999999999 99999999888764
No 86
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=99.60 E-value=1.9e-14 Score=84.34 Aligned_cols=76 Identities=16% Similarity=0.310 Sum_probs=66.8
Q ss_pred hCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhhhhhCCCcceeEEEEEeCCeEEEEEeCC-ChHH
Q 032496 44 KEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGA-NKPE 122 (139)
Q Consensus 44 ~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~ 122 (139)
..++.-+..|+++||++|....+.++++...++++.+..+|.++.++++.+|+|.++|++++ ||+.+.. |. +.++
T Consensus 10 l~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~~~~e~a~~~~V~~vPt~vi--dG~~~~~--G~~~~~e 85 (89)
T cd03026 10 LNGPINFETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMIDGALFQDEVEERGIMSVPAIFL--NGELFGF--GRMTLEE 85 (89)
T ss_pred cCCCEEEEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEEEhHhCHHHHHHcCCccCCEEEE--CCEEEEe--CCCCHHH
Confidence 45677888899999999999999999999999999999999999999999999999999976 8887764 65 5444
Q ss_pred H
Q 032496 123 L 123 (139)
Q Consensus 123 l 123 (139)
+
T Consensus 86 ~ 86 (89)
T cd03026 86 I 86 (89)
T ss_pred H
Confidence 3
No 87
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=99.60 E-value=5.2e-15 Score=98.26 Aligned_cols=110 Identities=15% Similarity=0.269 Sum_probs=76.1
Q ss_pred CCCceEEeechhHHHHHHHH--HhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCc------------
Q 032496 22 AGGNVSLVTTKDIWDQKMSE--ASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDE------------ 87 (139)
Q Consensus 22 ~~~~~~~i~~~~~~~~~~~~--~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~------------ 87 (139)
.|..+|++...+..++.+.. ...++|+++|+||++||+.|+.+.|.+.++.+++ ++.++.+..+.
T Consensus 48 vG~~aP~f~l~d~~G~~v~l~~~~~~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~-~~~vv~Is~~~~~~~~~~~~~~~ 126 (189)
T TIGR02661 48 VGDAAPIFNLPDFDGEPVRIGGSIAPGRPTLLMFTAPSCPVCDKLFPIIKSIARAE-ETDVVMISDGTPAEHRRFLKDHE 126 (189)
T ss_pred CCCcCCCcEecCCCCCEEeccchhcCCCEEEEEEECCCChhHHHHHHHHHHHHHhc-CCcEEEEeCCCHHHHHHHHHhcC
Confidence 34455555544333343443 2357899999999999999999999999998775 45555554321
Q ss_pred --------chhhhhhCCCcceeEEEEE-eCCeEEEEEeCCChHHHHHHHHHHhh
Q 032496 88 --------LVEFSTSWDIKATPTFFFL-KDGQQVDKLVGANKPELQKKVAAAVD 132 (139)
Q Consensus 88 --------~~~~~~~~~v~~~Pt~~~~-~~g~~~~~~~g~~~~~l~~~i~~~~~ 132 (139)
..++.+.|++..+|+.+++ ++|+++.+......+++++.++++..
T Consensus 127 ~~~~~~~~~~~i~~~y~v~~~P~~~lID~~G~I~~~g~~~~~~~le~ll~~l~~ 180 (189)
T TIGR02661 127 LGGERYVVSAEIGMAFQVGKIPYGVLLDQDGKIRAKGLTNTREHLESLLEADRE 180 (189)
T ss_pred CCcceeechhHHHHhccCCccceEEEECCCCeEEEccCCCCHHHHHHHHHHHHc
Confidence 2356778999999987666 89999876322267788888776533
No 88
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=99.60 E-value=5.1e-15 Score=91.72 Aligned_cols=83 Identities=29% Similarity=0.530 Sum_probs=64.4
Q ss_pred hhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeC---------------------CcchhhhhhCCCccee
Q 032496 43 SKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDV---------------------DELVEFSTSWDIKATP 101 (139)
Q Consensus 43 ~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~---------------------~~~~~~~~~~~v~~~P 101 (139)
...+++++|+||++||+.|+.+.+.+.++++.+. +..+.+|- +.+..+++.|++.++|
T Consensus 17 ~~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~-~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P 95 (123)
T cd03011 17 SLSGKPVLVYFWATWCPVCRFTSPTVNQLAADYP-VVSVALRSGDDGAVARFMQKKGYGFPVINDPDGVISARWGVSVTP 95 (123)
T ss_pred HhCCCEEEEEEECCcChhhhhhChHHHHHHhhCC-EEEEEccCCCHHHHHHHHHHcCCCccEEECCCcHHHHhCCCCccc
Confidence 3467999999999999999999999999988742 22222221 2345688899999999
Q ss_pred EEEEEeCCeEEEEEeCC-ChHHHHHH
Q 032496 102 TFFFLKDGQQVDKLVGA-NKPELQKK 126 (139)
Q Consensus 102 t~~~~~~g~~~~~~~g~-~~~~l~~~ 126 (139)
+++++.+++++....|. +.+.|.+.
T Consensus 96 ~~~vid~~gi~~~~~g~~~~~~~~~~ 121 (123)
T cd03011 96 AIVIVDPGGIVFVTTGVTSEWGLRLR 121 (123)
T ss_pred EEEEEcCCCeEEEEeccCCHHHHHhh
Confidence 99999544488888898 88888664
No 89
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=99.60 E-value=1.1e-14 Score=88.33 Aligned_cols=76 Identities=33% Similarity=0.708 Sum_probs=67.0
Q ss_pred HhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhC--CCcEEEEEeCCcc-----------------------hhhhhhCC
Q 032496 42 ASKEGKIVIANFSATWCGPCRMIAPFFSELSEKY--PSLMFLLVDVDEL-----------------------VEFSTSWD 96 (139)
Q Consensus 42 ~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~--~~v~~~~vd~~~~-----------------------~~~~~~~~ 96 (139)
....+++++++||++||+.|+...+.+.++.+++ +++.++.++.+.. ..+.+.|+
T Consensus 15 ~~~~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (116)
T cd02966 15 SDLKGKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYG 94 (116)
T ss_pred HHcCCCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcC
Confidence 3345899999999999999999999999999999 5799999999885 67888999
Q ss_pred CcceeEEEEE-eCCeEEEEEeC
Q 032496 97 IKATPTFFFL-KDGQQVDKLVG 117 (139)
Q Consensus 97 v~~~Pt~~~~-~~g~~~~~~~g 117 (139)
+.++|+++++ ++|+++.++.|
T Consensus 95 ~~~~P~~~l~d~~g~v~~~~~g 116 (116)
T cd02966 95 VRGLPTTFLIDRDGRIRARHVG 116 (116)
T ss_pred cCccceEEEECCCCcEEEEecC
Confidence 9999999888 79999888765
No 90
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=6.9e-15 Score=108.25 Aligned_cols=114 Identities=26% Similarity=0.481 Sum_probs=87.2
Q ss_pred CCCCCCCCcccCCCceEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCC---CcEEEEEeCCc
Q 032496 11 DEEDGEHPVEFAGGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP---SLMFLLVDVDE 87 (139)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~---~v~~~~vd~~~ 87 (139)
+-.+...|.+...++|..+ ..++|+..+. .++|-|||.||+|||++|+++.|.+++|++.|. ++.+..+|.+.
T Consensus 353 ~~kSqpiPe~~~~~pVkvv-Vgknfd~iv~---de~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~~~vviAKmDaTa 428 (493)
T KOG0190|consen 353 HLKSQPIPEDNDRSPVKVV-VGKNFDDIVL---DEGKDVLVEFYAPWCGHCKALAPIYEELAEKYKDDENVVIAKMDATA 428 (493)
T ss_pred ccccCCCCcccccCCeEEE-eecCHHHHhh---ccccceEEEEcCcccchhhhhhhHHHHHHHHhcCCCCcEEEEecccc
Confidence 3345555666666666665 4566776664 568999999999999999999999999999987 48999999998
Q ss_pred chhhhhhCCCcceeEEEEEeCCeE--EEEEeCC-ChHHHHHHHHHH
Q 032496 88 LVEFSTSWDIKATPTFFFLKDGQQ--VDKLVGA-NKPELQKKVAAA 130 (139)
Q Consensus 88 ~~~~~~~~~v~~~Pt~~~~~~g~~--~~~~~g~-~~~~l~~~i~~~ 130 (139)
|.- ....+.++||+++++.|.. ...+.|. +.++|..+|.+.
T Consensus 429 Nd~--~~~~~~~fPTI~~~pag~k~~pv~y~g~R~le~~~~fi~~~ 472 (493)
T KOG0190|consen 429 NDV--PSLKVDGFPTILFFPAGHKSNPVIYNGDRTLEDLKKFIKKS 472 (493)
T ss_pred ccC--ccccccccceEEEecCCCCCCCcccCCCcchHHHHhhhccC
Confidence 774 4557788999999966552 2334455 888888888764
No 91
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=99.59 E-value=1.6e-14 Score=90.02 Aligned_cols=80 Identities=21% Similarity=0.392 Sum_probs=65.0
Q ss_pred HHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCC--CcEEEEEeCC---------------------------cch
Q 032496 39 MSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP--SLMFLLVDVD---------------------------ELV 89 (139)
Q Consensus 39 ~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~--~v~~~~vd~~---------------------------~~~ 89 (139)
+.+...+++++||+||++||+.|....|.|+++++++. ++.++.|+.+ ...
T Consensus 16 v~l~~~~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~ 95 (126)
T cd03012 16 LSLAQLRGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDY 95 (126)
T ss_pred cCHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCch
Confidence 34444578999999999999999999999999999997 4788877542 122
Q ss_pred hhhhhCCCcceeEEEEE-eCCeEEEEEeCC
Q 032496 90 EFSTSWDIKATPTFFFL-KDGQQVDKLVGA 118 (139)
Q Consensus 90 ~~~~~~~v~~~Pt~~~~-~~g~~~~~~~g~ 118 (139)
.+.+.|++.++|+++++ ++|+++..+.|.
T Consensus 96 ~~~~~~~v~~~P~~~vid~~G~v~~~~~G~ 125 (126)
T cd03012 96 ATWRAYGNQYWPALYLIDPTGNVRHVHFGE 125 (126)
T ss_pred HHHHHhCCCcCCeEEEECCCCcEEEEEecC
Confidence 35667899999998888 799999988774
No 92
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=99.59 E-value=2e-14 Score=81.97 Aligned_cols=71 Identities=23% Similarity=0.290 Sum_probs=56.6
Q ss_pred EEEEeCCCChhhhhhhHhHHHHHHhCCC-cEEEEEeCCcchhhhhhCCCcceeEEEEEeCCeEEEEEeCC--ChHHHHHH
Q 032496 50 IANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGA--NKPELQKK 126 (139)
Q Consensus 50 lv~f~~~~C~~C~~~~~~l~~~~~~~~~-v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~--~~~~l~~~ 126 (139)
.|.||++||++|+.+.|.++++.++++. +.++.+| +.+.+.+|++.++||+++ ||+.+ +.|. +.+++.++
T Consensus 2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~---~~~~a~~~~v~~vPti~i--~G~~~--~~G~~~~~~~l~~~ 74 (76)
T TIGR00412 2 KIQIYGTGCANCQMTEKNVKKAVEELGIDAEFEKVT---DMNEILEAGVTATPGVAV--DGELV--IMGKIPSKEEIKEI 74 (76)
T ss_pred EEEEECCCCcCHHHHHHHHHHHHHHcCCCeEEEEeC---CHHHHHHcCCCcCCEEEE--CCEEE--EEeccCCHHHHHHH
Confidence 3789999999999999999999999863 7776666 233467899999999999 99887 4564 55666665
Q ss_pred H
Q 032496 127 V 127 (139)
Q Consensus 127 i 127 (139)
+
T Consensus 75 l 75 (76)
T TIGR00412 75 L 75 (76)
T ss_pred h
Confidence 4
No 93
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=99.59 E-value=4.4e-14 Score=92.30 Aligned_cols=84 Identities=19% Similarity=0.349 Sum_probs=70.0
Q ss_pred EEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcc-------------hhhhhhCCC--cceeEEEEE-eCCeEE-
Q 032496 50 IANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDEL-------------VEFSTSWDI--KATPTFFFL-KDGQQV- 112 (139)
Q Consensus 50 lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~-------------~~~~~~~~v--~~~Pt~~~~-~~g~~~- 112 (139)
+|+||++||++|+.+.|.|.++++++ ++.++.|+.|.. ..+...|++ .++|+.+++ ++|+++
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~-g~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~i~~ 151 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQY-GFSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTLEAL 151 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHc-CCEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCcEEE
Confidence 77799999999999999999999998 578877777633 235667885 699987777 899986
Q ss_pred EEEeCC-ChHHHHHHHHHHhhcc
Q 032496 113 DKLVGA-NKPELQKKVAAAVDSV 134 (139)
Q Consensus 113 ~~~~g~-~~~~l~~~i~~~~~~~ 134 (139)
..+.|. +.+++.+.|.++++..
T Consensus 152 ~~~~G~~~~~~L~~~I~~ll~~~ 174 (181)
T PRK13728 152 PLLQGATDAAGFMARMDTVLQMY 174 (181)
T ss_pred EEEECCCCHHHHHHHHHHHHhhh
Confidence 468888 9999999999998763
No 94
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.58 E-value=3.3e-14 Score=105.55 Aligned_cols=103 Identities=25% Similarity=0.478 Sum_probs=82.8
Q ss_pred ceEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCC----cEEEEEeCCcchhhhhhCCCcce
Q 032496 25 NVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS----LMFLLVDVDELVEFSTSWDIKAT 100 (139)
Q Consensus 25 ~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~----v~~~~vd~~~~~~~~~~~~v~~~ 100 (139)
.+.. ...++|.+.+. .++++++|+||++||++|+.+.|.++++++.+.+ +.|+.+|++.+.- .. |++.++
T Consensus 347 ~v~~-l~~~~f~~~v~---~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~~-~~-~~i~~~ 420 (462)
T TIGR01130 347 PVKV-LVGKNFDEIVL---DETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATANDV-PP-FEVEGF 420 (462)
T ss_pred ccEE-eeCcCHHHHhc---cCCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCcc-CC-CCcccc
Confidence 3443 35677777664 4589999999999999999999999999999864 8899999997653 33 999999
Q ss_pred eEEEEEeCCeEE--EEEeCC-ChHHHHHHHHHHhhc
Q 032496 101 PTFFFLKDGQQV--DKLVGA-NKPELQKKVAAAVDS 133 (139)
Q Consensus 101 Pt~~~~~~g~~~--~~~~g~-~~~~l~~~i~~~~~~ 133 (139)
||++++++|... ..+.|. +.+.|.++|.+....
T Consensus 421 Pt~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~ 456 (462)
T TIGR01130 421 PTIKFVPAGKKSEPVPYDGDRTLEDFSKFIAKHATF 456 (462)
T ss_pred CEEEEEeCCCCcCceEecCcCCHHHHHHHHHhcCCC
Confidence 999999877653 456676 899999999887543
No 95
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=99.55 E-value=2.3e-13 Score=84.51 Aligned_cols=92 Identities=13% Similarity=0.146 Sum_probs=80.2
Q ss_pred CCEEEEEEeCC--CChhhhhhhHhHHHHHHhCC-C-cEEEEEeCCcchhhhhhCCCcceeEEEEEeCCeEEEEEeCC-Ch
Q 032496 46 GKIVIANFSAT--WCGPCRMIAPFFSELSEKYP-S-LMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGA-NK 120 (139)
Q Consensus 46 ~k~vlv~f~~~--~C~~C~~~~~~l~~~~~~~~-~-v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~ 120 (139)
....+|+|-.+ -++.+..+.-.|.+++++|+ + ++++.+|+|+++.++.+|||.++||+++|++|+.+.+..|. +.
T Consensus 34 ~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~~~LA~~fgV~siPTLl~FkdGk~v~~i~G~~~k 113 (132)
T PRK11509 34 APDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEAIGDRFGVFRFPATLVFTGGNYRGVLNGIHPW 113 (132)
T ss_pred CCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCCCHHHHHHcCCccCCEEEEEECCEEEEEEeCcCCH
Confidence 44555555533 67888899999999999998 3 89999999999999999999999999999999999999999 99
Q ss_pred HHHHHHHHHHhhccCCC
Q 032496 121 PELQKKVAAAVDSVVPS 137 (139)
Q Consensus 121 ~~l~~~i~~~~~~~~~~ 137 (139)
+++.++|.++++...+.
T Consensus 114 ~~l~~~I~~~L~~~~~~ 130 (132)
T PRK11509 114 AELINLMRGLVEPQQER 130 (132)
T ss_pred HHHHHHHHHHhcCcCcc
Confidence 99999999998876543
No 96
>PLN02412 probable glutathione peroxidase
Probab=99.54 E-value=3.3e-14 Score=92.69 Aligned_cols=96 Identities=22% Similarity=0.295 Sum_probs=73.5
Q ss_pred HHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCC--CcEEEEEeCC--------cchhh----hhhCC-------
Q 032496 38 KMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP--SLMFLLVDVD--------ELVEF----STSWD------- 96 (139)
Q Consensus 38 ~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~--~v~~~~vd~~--------~~~~~----~~~~~------- 96 (139)
.+.+....+|++||+||++||+.|+...+.|.+++++|. ++.++.|+++ ...++ .++++
T Consensus 21 ~v~l~~~~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~~~~~~~~~~~~~~~~~~~~~~~~~fpvl~ 100 (167)
T PLN02412 21 DVSLNQYKGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCNQFLGQEPGSNEEIQQTVCTRFKAEFPIFD 100 (167)
T ss_pred EEeHHHhCCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEecccccccCCCCCHHHHHHHHHHccCCCCceEe
Confidence 344555678999999999999999999999999999997 4888888763 21111 11111
Q ss_pred ---------------------------CcceeEEEEE-eCCeEEEEEeCC-ChHHHHHHHHHHhhc
Q 032496 97 ---------------------------IKATPTFFFL-KDGQQVDKLVGA-NKPELQKKVAAAVDS 133 (139)
Q Consensus 97 ---------------------------v~~~Pt~~~~-~~g~~~~~~~g~-~~~~l~~~i~~~~~~ 133 (139)
+...|+.+++ ++|+++.++.|. +.+++...|.++++.
T Consensus 101 ~~d~~g~~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~~g~~~~~~l~~~i~~~l~~ 166 (167)
T PLN02412 101 KVDVNGKNTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRYAPTTSPLKIEKDIQNLLGQ 166 (167)
T ss_pred EEeeCCCCCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEECCCCCHHHHHHHHHHHHhh
Confidence 3335776666 999999999999 889999999998764
No 97
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=99.53 E-value=6.3e-14 Score=86.97 Aligned_cols=89 Identities=11% Similarity=0.164 Sum_probs=63.1
Q ss_pred eechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhH---HHHHHhCC-CcEEEEEeCCcchhhhhhCCCcceeEEE
Q 032496 29 VTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFF---SELSEKYP-SLMFLLVDVDELVEFSTSWDIKATPTFF 104 (139)
Q Consensus 29 i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l---~~~~~~~~-~v~~~~vd~~~~~~~~~~~~v~~~Pt~~ 104 (139)
|....+++..+..+..++|+++|+|++.||++|+.+...+ .++.+... ++..+.++.+....-....+ .++||++
T Consensus 6 i~W~~~~eeal~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~d~td~~~~~~g-~~vPtiv 84 (130)
T cd02960 6 IIWVQTYEEGLYKAKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVHETTDKNLSPDG-QYVPRIM 84 (130)
T ss_pred ccchhhHHHHHHHHHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEeccCCCCcCccC-cccCeEE
Confidence 4455578889999989999999999999999999998765 34444432 45555666542211111234 6899999
Q ss_pred EE-eCCeEEEEEeCC
Q 032496 105 FL-KDGQQVDKLVGA 118 (139)
Q Consensus 105 ~~-~~g~~~~~~~g~ 118 (139)
++ .+|+++.++.|.
T Consensus 85 Fld~~g~vi~~i~Gy 99 (130)
T cd02960 85 FVDPSLTVRADITGR 99 (130)
T ss_pred EECCCCCCccccccc
Confidence 99 889888776654
No 98
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=99.53 E-value=1.6e-14 Score=88.32 Aligned_cols=70 Identities=19% Similarity=0.347 Sum_probs=54.4
Q ss_pred CCCEEEEEEeCCCChhhhhhhHhHHHHHHhCC-CcEEEEEeCC---c-----------------chhhhhhCCCcceeEE
Q 032496 45 EGKIVIANFSATWCGPCRMIAPFFSELSEKYP-SLMFLLVDVD---E-----------------LVEFSTSWDIKATPTF 103 (139)
Q Consensus 45 ~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~-~v~~~~vd~~---~-----------------~~~~~~~~~v~~~Pt~ 103 (139)
++++++|+||++||+.|+.+.|.++++++.+. ++.++.+.-+ + +..+.+.|++..+|+.
T Consensus 20 ~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~P~~ 99 (114)
T cd02967 20 PGRPTLLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLASDGEKAEHQRFLKKHGLEAFPYVLSAELGMAYQVSKLPYA 99 (114)
T ss_pred CCCeEEEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEEeCCCHHHHHHHHHHhCCCCCcEEecHHHHhhcCCCCcCeE
Confidence 38999999999999999999999999988875 4666655211 1 1235667889999998
Q ss_pred EEE-eCCeEEEE
Q 032496 104 FFL-KDGQQVDK 114 (139)
Q Consensus 104 ~~~-~~g~~~~~ 114 (139)
+++ ++|+++.+
T Consensus 100 ~vid~~G~v~~~ 111 (114)
T cd02967 100 VLLDEAGVIAAK 111 (114)
T ss_pred EEECCCCeEEec
Confidence 887 78988765
No 99
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=99.53 E-value=8.3e-14 Score=91.10 Aligned_cols=91 Identities=19% Similarity=0.387 Sum_probs=73.5
Q ss_pred CCCEEEEEEeCCCChhhhhhhHhHHHHHHhCC--CcEEEEEeCCc-----------------------------chhhhh
Q 032496 45 EGKIVIANFSATWCGPCRMIAPFFSELSEKYP--SLMFLLVDVDE-----------------------------LVEFST 93 (139)
Q Consensus 45 ~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~-----------------------------~~~~~~ 93 (139)
.++++||+||++||+.|....+.|.++.++++ ++.++.+..+. +..+.+
T Consensus 24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~ 103 (171)
T cd02969 24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEVAK 103 (171)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHHHH
Confidence 68999999999999999999999999999987 58888887753 123466
Q ss_pred hCCCcceeEEEEE-eCCeEEEEEe---------CC-ChHHHHHHHHHHhhccC
Q 032496 94 SWDIKATPTFFFL-KDGQQVDKLV---------GA-NKPELQKKVAAAVDSVV 135 (139)
Q Consensus 94 ~~~v~~~Pt~~~~-~~g~~~~~~~---------g~-~~~~l~~~i~~~~~~~~ 135 (139)
.|++..+|+++++ ++|+++.... +. +...+.+.|..++...+
T Consensus 104 ~~~v~~~P~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~ 156 (171)
T cd02969 104 AYGAACTPDFFLFDPDGKLVYRGRIDDSRPGNDPPVTGRDLRAALDALLAGKP 156 (171)
T ss_pred HcCCCcCCcEEEECCCCeEEEeecccCCcccccccccHHHHHHHHHHHHcCCC
Confidence 7899999988888 7999886631 11 56789999999887654
No 100
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=99.51 E-value=9.5e-14 Score=89.31 Aligned_cols=94 Identities=20% Similarity=0.264 Sum_probs=71.0
Q ss_pred HHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCC--CcEEEEEeC--------Ccc---hhhhhh-CC-------
Q 032496 38 KMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP--SLMFLLVDV--------DEL---VEFSTS-WD------- 96 (139)
Q Consensus 38 ~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~--~v~~~~vd~--------~~~---~~~~~~-~~------- 96 (139)
.+.++..++|++||.||++||+.|....|.+.++++++. ++.++.+++ +.. ..++++ ++
T Consensus 14 ~~~l~~~~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~~~~~~~~~d~~~~~~~f~~~~~~~~fp~~~ 93 (153)
T TIGR02540 14 TVSLEKYRGKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPCNQFGESEPDSSKEIESFARRNYGVTFPMFS 93 (153)
T ss_pred EecHHHhCCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEeccccccCCCCCHHHHHHHHHHhcCCCCCccc
Confidence 355556779999999999999999999999999999986 588888885 211 112211 11
Q ss_pred ----------------C---ccee-----EEEEEeCCeEEEEEeCC-ChHHHHHHHHHHh
Q 032496 97 ----------------I---KATP-----TFFFLKDGQQVDKLVGA-NKPELQKKVAAAV 131 (139)
Q Consensus 97 ----------------v---~~~P-----t~~~~~~g~~~~~~~g~-~~~~l~~~i~~~~ 131 (139)
+ ..+| ++++.++|+++.++.|. +.+++.+.|.+++
T Consensus 94 d~~~~~~~~~~~~~~~~~~~~~~p~~~~~tflID~~G~v~~~~~g~~~~~~l~~~i~~l~ 153 (153)
T TIGR02540 94 KIKILGSEAEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFWRPEEPVEEIRPEITALV 153 (153)
T ss_pred eEecCCCCCCcHHHHHHhcCCCCCCCccEEEEEcCCCcEEEEECCCCCHHHHHHHHHHhC
Confidence 1 1367 56666999999999998 8888888887764
No 101
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=99.50 E-value=2.6e-13 Score=89.13 Aligned_cols=92 Identities=15% Similarity=0.230 Sum_probs=70.0
Q ss_pred HHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEE------EEEeCCcc-----------------------
Q 032496 38 KMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMF------LLVDVDEL----------------------- 88 (139)
Q Consensus 38 ~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~------~~vd~~~~----------------------- 88 (139)
.+..+...||+.||.|||.||+.|+..+|.+.++..+ ++.+ +.||.++.
T Consensus 51 ~~~~~~l~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~--~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~ 128 (184)
T TIGR01626 51 PWGSAELAGKVRVVHHIAGRTSAKEXNASLIDAIKAA--KFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQ 128 (184)
T ss_pred eccHHHcCCCEEEEEEEecCCChhhccchHHHHHHHc--CCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcce
Confidence 4455567799999999999999999999999999655 4555 66777642
Q ss_pred ------hhhhhhCCCcceeEE--EEEeCCeEEEEEeCC-ChHHHHHHHHHHhh
Q 032496 89 ------VEFSTSWDIKATPTF--FFLKDGQQVDKLVGA-NKPELQKKVAAAVD 132 (139)
Q Consensus 89 ------~~~~~~~~v~~~Pt~--~~~~~g~~~~~~~g~-~~~~l~~~i~~~~~ 132 (139)
......|++.++|+. ++.++|+++.+..|. +.+++.+ +..++.
T Consensus 129 vllD~~g~v~~~~gv~~~P~T~fVIDk~GkVv~~~~G~l~~ee~e~-~~~li~ 180 (184)
T TIGR01626 129 VVLDDKGAVKNAWQLNSEDSAIIVLDKTGKVKFVKEGALSDSDIQT-VISLVN 180 (184)
T ss_pred EEECCcchHHHhcCCCCCCceEEEECCCCcEEEEEeCCCCHHHHHH-HHHHHH
Confidence 123557899999755 444999999999999 8888777 444433
No 102
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=99.50 E-value=7.9e-14 Score=96.41 Aligned_cols=87 Identities=21% Similarity=0.465 Sum_probs=75.4
Q ss_pred hCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCC----cEEEEEeCCcchhhhhhCCCcceeEEEEEeCCeEEEEEeCCC
Q 032496 44 KEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS----LMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGAN 119 (139)
Q Consensus 44 ~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~----v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~ 119 (139)
+.+...+|.||+|||++|++..|.+.++--..++ +++-.+|+..-+.++..|||+++||+.+++++..+....|.+
T Consensus 41 kdddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefgiqGYPTIk~~kgd~a~dYRG~R~ 120 (468)
T KOG4277|consen 41 KDDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFGIQGYPTIKFFKGDHAIDYRGGRE 120 (468)
T ss_pred ccCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchhhHhhhccCCCceEEEecCCeeeecCCCcc
Confidence 4567999999999999999999999988655542 888899999999999999999999999999998887765668
Q ss_pred hHHHHHHHHHH
Q 032496 120 KPELQKKVAAA 130 (139)
Q Consensus 120 ~~~l~~~i~~~ 130 (139)
.+.|..+..+.
T Consensus 121 Kd~iieFAhR~ 131 (468)
T KOG4277|consen 121 KDAIIEFAHRC 131 (468)
T ss_pred HHHHHHHHHhc
Confidence 89988876653
No 103
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=99.49 E-value=9.4e-14 Score=95.85 Aligned_cols=89 Identities=24% Similarity=0.527 Sum_probs=78.4
Q ss_pred hCCCEEEEEEeCCCChhhhhhhHhHHHHHHh----CCC--cEEEEEeCCcchhhhhhCCCcceeEEEEEeCCeEEE-EEe
Q 032496 44 KEGKIVIANFSATWCGPCRMIAPFFSELSEK----YPS--LMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVD-KLV 116 (139)
Q Consensus 44 ~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~----~~~--v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~-~~~ 116 (139)
.++..|+|.|||+||+.++...|.+++.+.+ +|+ +.+..|||+.+..++.+|.|..+||+-+|.||.... .+.
T Consensus 11 ~s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I~KyPTlKvfrnG~~~~rEYR 90 (375)
T KOG0912|consen 11 DSNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHINKYPTLKVFRNGEMMKREYR 90 (375)
T ss_pred ccceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhccccCceeeeeeccchhhhhhc
Confidence 4578999999999999999999999776655 453 889999999999999999999999999999999887 566
Q ss_pred CC-ChHHHHHHHHHHhh
Q 032496 117 GA-NKPELQKKVAAAVD 132 (139)
Q Consensus 117 g~-~~~~l~~~i~~~~~ 132 (139)
|. +.+.|.++|++.+.
T Consensus 91 g~RsVeaL~efi~kq~s 107 (375)
T KOG0912|consen 91 GQRSVEALIEFIEKQLS 107 (375)
T ss_pred cchhHHHHHHHHHHHhc
Confidence 77 89999999887654
No 104
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=99.47 E-value=1.3e-13 Score=88.64 Aligned_cols=88 Identities=25% Similarity=0.394 Sum_probs=63.8
Q ss_pred HHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCC--CcEEEEEeCCc--------c---hhhhhh-CC-------
Q 032496 38 KMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP--SLMFLLVDVDE--------L---VEFSTS-WD------- 96 (139)
Q Consensus 38 ~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~--------~---~~~~~~-~~------- 96 (139)
.+.++..++|++||+||++||+ |....|.|+++++++. ++.++.++.+. . ..+++. ++
T Consensus 14 ~v~l~~~~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~f~~~~~~~~fp~~~ 92 (152)
T cd00340 14 PVSLSKYKGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCNQFGGQEPGSNEEIKEFCETNYGVTFPMFA 92 (152)
T ss_pred EEeHHHhCCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccCccccCCCCCHHHHHHHHHHhcCCCceeee
Confidence 3455556799999999999999 9999999999999996 48888886531 1 122221 11
Q ss_pred ----------------Cccee------------EEEEEeCCeEEEEEeCC-ChHHHHHH
Q 032496 97 ----------------IKATP------------TFFFLKDGQQVDKLVGA-NKPELQKK 126 (139)
Q Consensus 97 ----------------v~~~P------------t~~~~~~g~~~~~~~g~-~~~~l~~~ 126 (139)
+.++| ++++.++|+++.++.|. +.+++.+.
T Consensus 93 d~d~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ttflId~~G~i~~~~~G~~~~~~l~~~ 151 (152)
T cd00340 93 KIDVNGENAHPLYKYLKEEAPGLLGKDIKWNFTKFLVDRDGEVVKRFAPTTDPEELEKD 151 (152)
T ss_pred eEeccCCCCChHHHHHHhcCCCCCCCccccccEEEEECCCCcEEEEECCCCCHHHHHhc
Confidence 23456 44445999999999998 77776553
No 105
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=99.47 E-value=2.7e-13 Score=86.11 Aligned_cols=90 Identities=14% Similarity=0.278 Sum_probs=69.0
Q ss_pred HHHHHhhCCCEEEEEEeCCC-ChhhhhhhHhHHHHHHhCCCcEEEEEeCCcc-----------------------hhhhh
Q 032496 38 KMSEASKEGKIVIANFSATW-CGPCRMIAPFFSELSEKYPSLMFLLVDVDEL-----------------------VEFST 93 (139)
Q Consensus 38 ~~~~~~~~~k~vlv~f~~~~-C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~-----------------------~~~~~ 93 (139)
.+.+....+|++||+||+.| |+.|+...+.|.++++++.++.++.|+.+.. ..+.+
T Consensus 18 ~~~l~~~~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~ 97 (143)
T cd03014 18 EVSLADFAGKVKVISVFPSIDTPVCATQTKRFNKEAAKLDNTVVLTISADLPFAQKRWCGAEGVDNVTTLSDFRDHSFGK 97 (143)
T ss_pred EEeHHHhCCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcCCCEEEEEECCCHHHHHHHHHhcCCCCceEeecCcccHHHH
Confidence 34445567899999999988 6999999999999999998899999888631 23456
Q ss_pred hCCCcc------eeEEEEE-eCCeEEEEEeCC---ChHHHHHHH
Q 032496 94 SWDIKA------TPTFFFL-KDGQQVDKLVGA---NKPELQKKV 127 (139)
Q Consensus 94 ~~~v~~------~Pt~~~~-~~g~~~~~~~g~---~~~~l~~~i 127 (139)
.||+.. .|+.+++ ++|+++....|. ...++.+.|
T Consensus 98 ~~gv~~~~~~~~~~~~~iid~~G~I~~~~~~~~~~~~~~~~~~~ 141 (143)
T cd03014 98 AYGVLIKDLGLLARAVFVIDENGKVIYVELVPEITDEPDYEAAL 141 (143)
T ss_pred HhCCeeccCCccceEEEEEcCCCeEEEEEECCCcccCCCHHHHh
Confidence 777753 5776666 899999998865 345555544
No 106
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=99.47 E-value=3.8e-13 Score=87.72 Aligned_cols=109 Identities=18% Similarity=0.214 Sum_probs=79.7
Q ss_pred cCCCceEEeechhHHHHHHHHHhhCCCEEEEEEeCCC-ChhhhhhhHhHHHHHHhCCCcEEEEEeCCc------------
Q 032496 21 FAGGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATW-CGPCRMIAPFFSELSEKYPSLMFLLVDVDE------------ 87 (139)
Q Consensus 21 ~~~~~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~-C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~------------ 87 (139)
..|..+|++...+...+.+.+...++|++||+||+.| |+.|....+.|.++++++.++.++.|..|.
T Consensus 19 ~~G~~~P~f~l~~~~g~~v~l~~~~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~~~~vv~vs~D~~~~~~~f~~~~~ 98 (167)
T PRK00522 19 QVGDKAPDFTLVANDLSDVSLADFAGKRKVLNIFPSIDTGVCATSVRKFNQEAAELDNTVVLCISADLPFAQKRFCGAEG 98 (167)
T ss_pred CCCCCCCCeEEEcCCCcEEehHHhCCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcCCcEEEEEeCCCHHHHHHHHHhCC
Confidence 3455666665444434445566667999999999999 999999999999999998788888888763
Q ss_pred -----------chhhhhhCCCccee---------EEEEE-eCCeEEEEEeCC---ChHHHHHHHHH
Q 032496 88 -----------LVEFSTSWDIKATP---------TFFFL-KDGQQVDKLVGA---NKPELQKKVAA 129 (139)
Q Consensus 88 -----------~~~~~~~~~v~~~P---------t~~~~-~~g~~~~~~~g~---~~~~l~~~i~~ 129 (139)
...+++.||+...| +.+++ ++|+++..+.+. ...++.+.+..
T Consensus 99 ~~~~~~lsD~~~~~~~~~~gv~~~~~~~~g~~~r~tfvId~~G~I~~~~~~~~~~~~~~~~~~l~~ 164 (167)
T PRK00522 99 LENVITLSDFRDHSFGKAYGVAIAEGPLKGLLARAVFVLDENNKVVYSELVPEITNEPDYDAALAA 164 (167)
T ss_pred CCCceEeecCCccHHHHHhCCeecccccCCceeeEEEEECCCCeEEEEEECCCcCCCCCHHHHHHH
Confidence 12567788887766 66666 899999988543 44445555444
No 107
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=99.46 E-value=1e-13 Score=85.82 Aligned_cols=92 Identities=27% Similarity=0.447 Sum_probs=71.4
Q ss_pred CCceEEeechhHHHHHHHHHhhCCCEEEEEEeCC-CChhhhhhhHhHHHHHHhCC--CcEEEEEeCCcc-----------
Q 032496 23 GGNVSLVTTKDIWDQKMSEASKEGKIVIANFSAT-WCGPCRMIAPFFSELSEKYP--SLMFLLVDVDEL----------- 88 (139)
Q Consensus 23 ~~~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~-~C~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~~----------- 88 (139)
|..+|++...+...+.+.+....++++||.||+. ||+.|....+.|.++.++++ ++.++.|..+..
T Consensus 2 G~~~P~f~l~~~~g~~~~l~~l~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~ 81 (124)
T PF00578_consen 2 GDKAPDFTLTDSDGKTVSLSDLKGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEYG 81 (124)
T ss_dssp TSBGGCEEEETTTSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHHT
T ss_pred cCCCCCcEeECCCCCEEEHHHHCCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccccchhhhhhhhc
Confidence 4445555544444445666667889999999999 99999999999999998876 699999988642
Q ss_pred ----------hhhhhhCCCc------ceeEEEEE-eCCeEEEE
Q 032496 89 ----------VEFSTSWDIK------ATPTFFFL-KDGQQVDK 114 (139)
Q Consensus 89 ----------~~~~~~~~v~------~~Pt~~~~-~~g~~~~~ 114 (139)
..+.+.|++. .+|+++++ ++|+++.+
T Consensus 82 ~~~~~~~D~~~~~~~~~~~~~~~~~~~~p~~~lid~~g~I~~~ 124 (124)
T PF00578_consen 82 LPFPVLSDPDGELAKAFGIEDEKDTLALPAVFLIDPDGKIRYA 124 (124)
T ss_dssp CSSEEEEETTSHHHHHTTCEETTTSEESEEEEEEETTSBEEEE
T ss_pred cccccccCcchHHHHHcCCccccCCceEeEEEEECCCCEEEeC
Confidence 3467789988 89987777 88888753
No 108
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=6.9e-13 Score=96.83 Aligned_cols=91 Identities=23% Similarity=0.488 Sum_probs=79.2
Q ss_pred hCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCC-cEEEEEeCCcchhhhhhCCCcceeEEEEEeCCeEEEEEeCC-ChH
Q 032496 44 KEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGA-NKP 121 (139)
Q Consensus 44 ~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~-v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~ 121 (139)
..+++.+|.||++||++|..+.|.+.++.+.+.+ +.+..||++++.+++..|+|.++||+.+|..|.....+.|. +.+
T Consensus 45 ~~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~~~~~~vd~~~~~~~~~~y~i~gfPtl~~f~~~~~~~~~~~~~~~~ 124 (383)
T KOG0191|consen 45 KDDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGKVKIGAVDCDEHKDLCEKYGIQGFPTLKVFRPGKKPIDYSGPRNAE 124 (383)
T ss_pred ccCCceEEEEECCCCcchhhhchHHHHHHHHhcCceEEEEeCchhhHHHHHhcCCccCcEEEEEcCCCceeeccCcccHH
Confidence 5578999999999999999999999999999887 89999999999999999999999999999888444445555 888
Q ss_pred HHHHHHHHHhhcc
Q 032496 122 ELQKKVAAAVDSV 134 (139)
Q Consensus 122 ~l~~~i~~~~~~~ 134 (139)
.+..++...+...
T Consensus 125 ~~~~~~~~~~~~~ 137 (383)
T KOG0191|consen 125 SLAEFLIKELEPS 137 (383)
T ss_pred HHHHHHHHhhccc
Confidence 8888887776543
No 109
>PTZ00256 glutathione peroxidase; Provisional
Probab=99.44 E-value=7.1e-13 Score=87.64 Aligned_cols=108 Identities=19% Similarity=0.207 Sum_probs=76.1
Q ss_pred ceEEeechhHHHHHHHHHhhCCCEE-EEEEeCCCChhhhhhhHhHHHHHHhCC--CcEEEEEeCCc-------c-h---h
Q 032496 25 NVSLVTTKDIWDQKMSEASKEGKIV-IANFSATWCGPCRMIAPFFSELSEKYP--SLMFLLVDVDE-------L-V---E 90 (139)
Q Consensus 25 ~~~~i~~~~~~~~~~~~~~~~~k~v-lv~f~~~~C~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~-------~-~---~ 90 (139)
.++++...+...+.+.++..++|++ |+.+|++||+.|+...|.|++++++|. ++.++.++++. . . .
T Consensus 19 ~~p~f~l~d~~G~~vsLs~~~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~~~~~~~~~~~~~~~~ 98 (183)
T PTZ00256 19 SFFEFEAIDIDGQLVQLSKFKGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCNQFMEQEPWDEPEIKE 98 (183)
T ss_pred cccceEeEcCCCCEEeHHHhCCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecccccccCCCCHHHHHH
Confidence 3455443333334456666778865 456699999999999999999999986 58888887531 0 0 0
Q ss_pred h-hhh------------------------------------CCCcceeE----EEEEeCCeEEEEEeCC-ChHHHHHHHH
Q 032496 91 F-STS------------------------------------WDIKATPT----FFFLKDGQQVDKLVGA-NKPELQKKVA 128 (139)
Q Consensus 91 ~-~~~------------------------------------~~v~~~Pt----~~~~~~g~~~~~~~g~-~~~~l~~~i~ 128 (139)
+ .++ +++.++|+ +++.++|+++.++.|. +.+.+.+.|.
T Consensus 99 f~~~~~~~~fpv~~d~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflID~~G~Iv~~~~g~~~~~~l~~~I~ 178 (183)
T PTZ00256 99 YVQKKFNVDFPLFQKIEVNGENTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLIDGQGKVVKYFSPKVNPNEMIQDIE 178 (183)
T ss_pred HHHHhcCCCCCCceEEecCCCCCCHHHHHHHhhCCCCcCccccCcccCcceEEEEECCCCCEEEEECCCCCHHHHHHHHH
Confidence 0 111 13447794 6666999999999988 8888999888
Q ss_pred HHhh
Q 032496 129 AAVD 132 (139)
Q Consensus 129 ~~~~ 132 (139)
++++
T Consensus 179 ~ll~ 182 (183)
T PTZ00256 179 KLLN 182 (183)
T ss_pred HHhc
Confidence 8874
No 110
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=99.44 E-value=4.2e-13 Score=84.83 Aligned_cols=89 Identities=19% Similarity=0.231 Sum_probs=69.3
Q ss_pred HHHHhhCCCEEEEEEe-CCCChhhhhhhHhHHHHHHhCC--CcEEEEEeCCc---------------------chhhhhh
Q 032496 39 MSEASKEGKIVIANFS-ATWCGPCRMIAPFFSELSEKYP--SLMFLLVDVDE---------------------LVEFSTS 94 (139)
Q Consensus 39 ~~~~~~~~k~vlv~f~-~~~C~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~---------------------~~~~~~~ 94 (139)
+.+...++|+++|+|| +.||+.|....+.|.++.+++. ++.++.|..+. ...+.+.
T Consensus 16 ~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~ 95 (140)
T cd03017 16 VSLSDLRGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEKYGLPFPLLSDPDGKLAKA 95 (140)
T ss_pred EeHHHhCCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCceEEECCccHHHHH
Confidence 3334456899999999 6899999999999999988875 58888887753 2345777
Q ss_pred CCCcce---------eEEEEE-eCCeEEEEEeCC-ChHHHHHHH
Q 032496 95 WDIKAT---------PTFFFL-KDGQQVDKLVGA-NKPELQKKV 127 (139)
Q Consensus 95 ~~v~~~---------Pt~~~~-~~g~~~~~~~g~-~~~~l~~~i 127 (139)
||+... |+++++ ++|+++..+.|. ....+.+.+
T Consensus 96 ~gv~~~~~~~~~~~~p~~~lid~~G~v~~~~~g~~~~~~~~~~~ 139 (140)
T cd03017 96 YGVWGEKKKKYMGIERSTFLIDPDGKIVKVWRKVKPKGHAEEVL 139 (140)
T ss_pred hCCccccccccCCcceeEEEECCCCEEEEEEecCCccchHHHHh
Confidence 888887 887777 789999999998 666665543
No 111
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=99.40 E-value=4.7e-12 Score=87.78 Aligned_cols=93 Identities=18% Similarity=0.371 Sum_probs=74.3
Q ss_pred CceEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhhhhhCCCcceeEE
Q 032496 24 GNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTF 103 (139)
Q Consensus 24 ~~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~ 103 (139)
+.+.++...+.|-..+... .++..|||+||.+.++.|..+...|..|+.+|+.++|+.|.....+ +..+|.+..+||+
T Consensus 125 G~v~ei~~~e~~l~~ie~~-~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~vKFvkI~a~~~~-~~~~f~~~~LPtl 202 (265)
T PF02114_consen 125 GEVYEIDSGEEFLDAIEKE-SKSTWVVVHIYEPGFPRCEIMNSCLECLARKYPEVKFVKIRASKCP-ASENFPDKNLPTL 202 (265)
T ss_dssp -SEEE--SHHHHHHHCCTS-STT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TTSEEEEEEECGCC-TTTTS-TTC-SEE
T ss_pred ceEEEccChhhHHHHHhcc-CCCcEEEEEEEeCCCchHHHHHHHHHHHHHhCCceEEEEEehhccC-cccCCcccCCCEE
Confidence 5677887777777766432 3356899999999999999999999999999999999999988766 7889999999999
Q ss_pred EEEeCCeEEEEEeCC
Q 032496 104 FFLKDGQQVDKLVGA 118 (139)
Q Consensus 104 ~~~~~g~~~~~~~g~ 118 (139)
++|++|..+..++|.
T Consensus 203 lvYk~G~l~~~~V~l 217 (265)
T PF02114_consen 203 LVYKNGDLIGNFVGL 217 (265)
T ss_dssp EEEETTEEEEEECTG
T ss_pred EEEECCEEEEeEEeh
Confidence 999999999998875
No 112
>smart00594 UAS UAS domain.
Probab=99.40 E-value=6.6e-12 Score=77.85 Aligned_cols=97 Identities=15% Similarity=0.183 Sum_probs=74.5
Q ss_pred chhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhH---HHHHHhCC-CcEEEEEeCC--cchhhhhhCCCcceeEEE
Q 032496 31 TKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFF---SELSEKYP-SLMFLLVDVD--ELVEFSTSWDIKATPTFF 104 (139)
Q Consensus 31 ~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l---~~~~~~~~-~v~~~~vd~~--~~~~~~~~~~v~~~Pt~~ 104 (139)
...+++..+..+..++|+++|+|+++||++|..+...+ .++.+... ++.++.+|.+ +...++.+|++.++|+++
T Consensus 12 ~~gs~~~a~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~eg~~l~~~~~~~~~P~~~ 91 (122)
T smart00594 12 YQGSLEAAKQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSEGQRVSQFYKLDSFPYVA 91 (122)
T ss_pred eeCCHHHHHHHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChhHHHHHHhcCcCCCCEEE
Confidence 45577888888888899999999999999999987643 34444443 4677777765 445689999999999999
Q ss_pred EE-eCC-----eEEEEEeCC-ChHHHHHHH
Q 032496 105 FL-KDG-----QQVDKLVGA-NKPELQKKV 127 (139)
Q Consensus 105 ~~-~~g-----~~~~~~~g~-~~~~l~~~i 127 (139)
++ .+| .++.+..|. +.++|...|
T Consensus 92 ~l~~~~g~~~~~~~~~~~G~~~~~~l~~~l 121 (122)
T smart00594 92 IVDPRTGQRVIEWVGVVEGEISPEELMTFL 121 (122)
T ss_pred EEecCCCceeEEEeccccCCCCHHHHHHhh
Confidence 99 665 356777788 888887765
No 113
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=99.38 E-value=1.9e-12 Score=74.79 Aligned_cols=74 Identities=34% Similarity=0.627 Sum_probs=56.5
Q ss_pred hHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhH---HHHHHh-CCCcEEEEEeCCcchhhhhhCCCcceeEEEEEe
Q 032496 33 DIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFF---SELSEK-YPSLMFLLVDVDELVEFSTSWDIKATPTFFFLK 107 (139)
Q Consensus 33 ~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l---~~~~~~-~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~ 107 (139)
.++++.+..+..++|+++|+|+++||++|+.+...+ .++.+. ..++.++.+|.+......... ..++|+++++.
T Consensus 4 ~d~~~al~~A~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~~~~~-~~~~P~~~~ld 81 (82)
T PF13899_consen 4 SDYEEALAEAKKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDPNAQFD-RQGYPTFFFLD 81 (82)
T ss_dssp SSHHHHHHHHHHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHHHHHHH-HCSSSEEEEEE
T ss_pred hhHHHHHHHHHHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCChhHHhC-CccCCEEEEeC
Confidence 457788888888999999999999999999998766 444442 236899999998766533222 26699999874
No 114
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=99.37 E-value=3.6e-12 Score=81.97 Aligned_cols=91 Identities=12% Similarity=0.167 Sum_probs=66.7
Q ss_pred HHHHHhhCCCEEEEEEeCC-CChhhhhhhHhHHHHHHhCC--CcEEEEEeCCcc---------------------hhhhh
Q 032496 38 KMSEASKEGKIVIANFSAT-WCGPCRMIAPFFSELSEKYP--SLMFLLVDVDEL---------------------VEFST 93 (139)
Q Consensus 38 ~~~~~~~~~k~vlv~f~~~-~C~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~~---------------------~~~~~ 93 (139)
.+.+...++|++||+||+. ||+.|....+.+.++++++. ++.++.|..+.. ..+.+
T Consensus 22 ~~~l~~~~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~ 101 (154)
T PRK09437 22 QVSLTDFQGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDKPEKLSRFAEKELLNFTLLSDEDHQVAE 101 (154)
T ss_pred EEeHHHhCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCCeEEECCCchHHH
Confidence 3455556789999999965 78899999999999888874 588888887642 23566
Q ss_pred hCCCcce------------eEEEEE-eCCeEEEEEeCC-ChHHHHHHHH
Q 032496 94 SWDIKAT------------PTFFFL-KDGQQVDKLVGA-NKPELQKKVA 128 (139)
Q Consensus 94 ~~~v~~~------------Pt~~~~-~~g~~~~~~~g~-~~~~l~~~i~ 128 (139)
.||+... |+.+++ ++|+++..+.|. ..+.+.+.++
T Consensus 102 ~~gv~~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~~~~~~~~~ 150 (154)
T PRK09437 102 QFGVWGEKKFMGKTYDGIHRISFLIDADGKIEHVFDKFKTSNHHDVVLD 150 (154)
T ss_pred HhCCCcccccccccccCcceEEEEECCCCEEEEEEcCCCcchhHHHHHH
Confidence 7887543 555555 899999999988 4555444433
No 115
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=99.37 E-value=6e-12 Score=82.50 Aligned_cols=92 Identities=21% Similarity=0.212 Sum_probs=68.1
Q ss_pred HHHHhhCCCEEEEEEe-CCCChhhhhhhHhHHHHHHhCC--CcEEEEEeCCcc---------------------------
Q 032496 39 MSEASKEGKIVIANFS-ATWCGPCRMIAPFFSELSEKYP--SLMFLLVDVDEL--------------------------- 88 (139)
Q Consensus 39 ~~~~~~~~k~vlv~f~-~~~C~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~~--------------------------- 88 (139)
+.+...++|++||+|| +.||+.|....+.|.++++++. ++.++.|..|..
T Consensus 22 ~~l~~~~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~ 101 (173)
T cd03015 22 ISLSDYKGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDSHFSHLAWRNTPRKEGGLGKINFPLLADP 101 (173)
T ss_pred EehHHhCCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCCHHHHHHHHHhhhhhCCccCcceeEEECC
Confidence 4444456899999999 8999999999999999999985 588888876532
Q ss_pred -hhhhhhCCCc------ceeEEEEE-eCCeEEEEEeCC-----ChHHHHHHHHHH
Q 032496 89 -VEFSTSWDIK------ATPTFFFL-KDGQQVDKLVGA-----NKPELQKKVAAA 130 (139)
Q Consensus 89 -~~~~~~~~v~------~~Pt~~~~-~~g~~~~~~~g~-----~~~~l~~~i~~~ 130 (139)
..+.+.|++. ..|+++++ ++|+++..+.+. +.+++.+.|+.+
T Consensus 102 ~~~~~~~~gv~~~~~~~~~p~~~lID~~G~I~~~~~~~~~~~~~~~~il~~l~~~ 156 (173)
T cd03015 102 KKKISRDYGVLDEEEGVALRGTFIIDPEGIIRHITVNDLPVGRSVDETLRVLDAL 156 (173)
T ss_pred chhHHHHhCCccccCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 1235567775 56777777 899999988654 345566666554
No 116
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=99.34 E-value=5.3e-12 Score=94.23 Aligned_cols=102 Identities=21% Similarity=0.426 Sum_probs=82.0
Q ss_pred EEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhH---HHHHHhCCCcEEEEEeCCcc----hhhhhhCCCcc
Q 032496 27 SLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFF---SELSEKYPSLMFLLVDVDEL----VEFSTSWDIKA 99 (139)
Q Consensus 27 ~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l---~~~~~~~~~v~~~~vd~~~~----~~~~~~~~v~~ 99 (139)
..+....+.++.+... ++|+|+|.||++||-.|+.+.+.. .++..+..++.+..+|.+++ .++.++|++.+
T Consensus 457 q~~s~~~~L~~~la~~--~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~~~p~~~~lLk~~~~~G 534 (569)
T COG4232 457 QPISPLAELDQALAEA--KAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTANDPAITALLKRLGVFG 534 (569)
T ss_pred hccCCHHHHHHHHHhC--CCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecCCCHHHHHHHHHcCCCC
Confidence 4555555666666433 336999999999999999998865 45566677899999999854 56788999999
Q ss_pred eeEEEEE-eCCeEEEEEeCC-ChHHHHHHHHHH
Q 032496 100 TPTFFFL-KDGQQVDKLVGA-NKPELQKKVAAA 130 (139)
Q Consensus 100 ~Pt~~~~-~~g~~~~~~~g~-~~~~l~~~i~~~ 130 (139)
+|++++| .+|++.....|. +.+.+.+++++.
T Consensus 535 ~P~~~ff~~~g~e~~~l~gf~~a~~~~~~l~~~ 567 (569)
T COG4232 535 VPTYLFFGPQGSEPEILTGFLTADAFLEHLERA 567 (569)
T ss_pred CCEEEEECCCCCcCcCCcceecHHHHHHHHHHh
Confidence 9999999 588887778888 999999998775
No 117
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=99.31 E-value=2e-11 Score=81.05 Aligned_cols=90 Identities=14% Similarity=0.193 Sum_probs=66.4
Q ss_pred HHHHhhCCCEEEEEEe-CCCChhhhhhhHhHHHHHHhCC--CcEEEEEeCCcc-------------------------hh
Q 032496 39 MSEASKEGKIVIANFS-ATWCGPCRMIAPFFSELSEKYP--SLMFLLVDVDEL-------------------------VE 90 (139)
Q Consensus 39 ~~~~~~~~k~vlv~f~-~~~C~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~~-------------------------~~ 90 (139)
+.+....+|++||+|| +.||+.|....+.|.++.+++. ++.++.|..|.. ..
T Consensus 24 ~sl~d~~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~l~fpllsD~~~~ 103 (187)
T TIGR03137 24 VTDEDVKGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDPTGV 103 (187)
T ss_pred ecHHHHCCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHhhhhhccCcceeEEECCccH
Confidence 4444467899999999 9999999999999999988874 577888776531 23
Q ss_pred hhhhCCCc------ceeEEEEE-eCCeEEEEEeCC-----ChHHHHHHHH
Q 032496 91 FSTSWDIK------ATPTFFFL-KDGQQVDKLVGA-----NKPELQKKVA 128 (139)
Q Consensus 91 ~~~~~~v~------~~Pt~~~~-~~g~~~~~~~g~-----~~~~l~~~i~ 128 (139)
+++.||+. ..|+.+++ ++|+++..+.+. ..+++.+.|+
T Consensus 104 ~a~~~gv~~~~~g~~~p~tfiID~~G~I~~~~~~~~~~~~~~~~ll~~l~ 153 (187)
T TIGR03137 104 LTRNFGVLIEEAGLADRGTFVIDPEGVIQAVEITDNGIGRDASELLRKIK 153 (187)
T ss_pred HHHHhCCcccCCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHH
Confidence 56678875 45866666 899999887542 4555555553
No 118
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=99.31 E-value=2.6e-11 Score=78.88 Aligned_cols=95 Identities=21% Similarity=0.333 Sum_probs=87.1
Q ss_pred ccCCCceEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhhhhhCCCcc
Q 032496 20 EFAGGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKA 99 (139)
Q Consensus 20 ~~~~~~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~ 99 (139)
...++.+..+.+..+|-+.. .+...||++||.+.-..|+.|..+|+.+++.+.+.+|+.||....|-++.+++|..
T Consensus 62 ~~GhG~y~ev~~Ekdf~~~~----~kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~eTrFikvnae~~PFlv~kL~IkV 137 (211)
T KOG1672|consen 62 SKGHGEYEEVASEKDFFEEV----KKSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVETRFIKVNAEKAPFLVTKLNIKV 137 (211)
T ss_pred HcCCceEEEeccHHHHHHHh----hcCceEEEEEEcCCCcceehHHHHHHHHHHhcccceEEEEecccCceeeeeeeeeE
Confidence 35678889999888887666 45678899999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEEeCCeEEEEEeCC
Q 032496 100 TPTFFFLKDGQQVDKLVGA 118 (139)
Q Consensus 100 ~Pt~~~~~~g~~~~~~~g~ 118 (139)
+|++.+|++|+...++.|+
T Consensus 138 LP~v~l~k~g~~~D~iVGF 156 (211)
T KOG1672|consen 138 LPTVALFKNGKTVDYVVGF 156 (211)
T ss_pred eeeEEEEEcCEEEEEEeeH
Confidence 9999999999999999887
No 119
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.31 E-value=2.5e-12 Score=95.36 Aligned_cols=102 Identities=19% Similarity=0.438 Sum_probs=75.8
Q ss_pred EeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCC----cEEEEEeCC--cchhhhhhCCCccee
Q 032496 28 LVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS----LMFLLVDVD--ELVEFSTSWDIKATP 101 (139)
Q Consensus 28 ~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~----v~~~~vd~~--~~~~~~~~~~v~~~P 101 (139)
...+.++|+..+... .+-.+|.||++||++|+.+.|.+++++++... +.+..|||. .|..+|+.|+|.++|
T Consensus 42 i~Ld~~tf~~~v~~~---~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef~V~~~P 118 (606)
T KOG1731|consen 42 IELDVDTFNAAVFGS---RKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREFSVSGYP 118 (606)
T ss_pred EEeehhhhHHHhccc---chhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhHhhcCCCCCc
Confidence 334778888877533 45679999999999999999999999988753 888889995 688999999999999
Q ss_pred EEEEEeCC----eEEEEEeCC-ChHHHHHHHHHHhh
Q 032496 102 TFFFLKDG----QQVDKLVGA-NKPELQKKVAAAVD 132 (139)
Q Consensus 102 t~~~~~~g----~~~~~~~g~-~~~~l~~~i~~~~~ 132 (139)
++-+|+.+ ..-..+.|. ...++.+.+.+.+.
T Consensus 119 tlryf~~~~~~~~~G~~~~~~~~~~ei~~~l~~~la 154 (606)
T KOG1731|consen 119 TLRYFPPDSQNKTDGSDVSGPVIPSEIRDQLIRTLA 154 (606)
T ss_pred eeeecCCccccCcCCCcccCCcchhhHHHHHHHHHH
Confidence 99999432 111223343 45556655555444
No 120
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=99.31 E-value=1.3e-11 Score=78.75 Aligned_cols=83 Identities=18% Similarity=0.222 Sum_probs=62.2
Q ss_pred HHHHHHHhhCC-CEEEEEEe-CCCChhhhhhhHhHHHHHHhCC--CcEEEEEeCCc---------------------c--
Q 032496 36 DQKMSEASKEG-KIVIANFS-ATWCGPCRMIAPFFSELSEKYP--SLMFLLVDVDE---------------------L-- 88 (139)
Q Consensus 36 ~~~~~~~~~~~-k~vlv~f~-~~~C~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~---------------------~-- 88 (139)
.+.+.+...++ ++++|.|| ++||+.|....+.+.++.+++. ++.++.|..+. .
T Consensus 17 g~~v~l~~~~g~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~D~~~~ 96 (149)
T cd03018 17 GQEVRLSEFRGRKPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDSPFSLRAWAEENGLTFPLLSDFWPH 96 (149)
T ss_pred CCEEeHHHHcCCCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCCHHHHHHHHHhcCCCceEecCCCch
Confidence 33455555566 88888888 8999999999999999998885 58888887653 2
Q ss_pred hhhhhhCCCcc----ee--EEEEE-eCCeEEEEEeCC
Q 032496 89 VEFSTSWDIKA----TP--TFFFL-KDGQQVDKLVGA 118 (139)
Q Consensus 89 ~~~~~~~~v~~----~P--t~~~~-~~g~~~~~~~g~ 118 (139)
..+.+.|++.. +| +++++ ++|+++..+.|.
T Consensus 97 ~~~~~~~g~~~~~~~~~~~~~~lid~~G~v~~~~~~~ 133 (149)
T cd03018 97 GEVAKAYGVFDEDLGVAERAVFVIDRDGIIRYAWVSD 133 (149)
T ss_pred hHHHHHhCCccccCCCccceEEEECCCCEEEEEEecC
Confidence 44566788763 33 55555 899999988876
No 121
>PF13728 TraF: F plasmid transfer operon protein
Probab=99.28 E-value=1.4e-10 Score=78.33 Aligned_cols=83 Identities=20% Similarity=0.346 Sum_probs=68.7
Q ss_pred hCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCC-----------cchhhhhhCCCcceeEEEEE-eCC-e
Q 032496 44 KEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVD-----------ELVEFSTSWDIKATPTFFFL-KDG-Q 110 (139)
Q Consensus 44 ~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~-----------~~~~~~~~~~v~~~Pt~~~~-~~g-~ 110 (139)
..++..|++||.+.|++|+.+.|.+..++++| ++.++.|+.| .+..++++|||..+|+++++ .++ +
T Consensus 118 la~~~gL~~F~~~~C~~C~~~~pil~~~~~~y-g~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~Lv~~~~~~ 196 (215)
T PF13728_consen 118 LAQKYGLFFFYRSDCPYCQQQAPILQQFADKY-GFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFLVNPNTKK 196 (215)
T ss_pred HhhCeEEEEEEcCCCchhHHHHHHHHHHHHHh-CCEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEEEECCCCe
Confidence 35789999999999999999999999999999 7777777777 35778999999999998888 444 4
Q ss_pred EEEEEeCC-ChHHHHHHH
Q 032496 111 QVDKLVGA-NKPELQKKV 127 (139)
Q Consensus 111 ~~~~~~g~-~~~~l~~~i 127 (139)
..-...|. +.++|.+.|
T Consensus 197 ~~pv~~G~~s~~~L~~ri 214 (215)
T PF13728_consen 197 WYPVSQGFMSLDELEDRI 214 (215)
T ss_pred EEEEeeecCCHHHHHHhh
Confidence 44455677 888887654
No 122
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=2e-10 Score=72.36 Aligned_cols=91 Identities=19% Similarity=0.343 Sum_probs=73.6
Q ss_pred HHHhhCCCEEEEEEeCCCChhhhhhhHhH---HHHHHhCC-CcEEEEEeCCc----------------chhhhhhCCCcc
Q 032496 40 SEASKEGKIVIANFSATWCGPCRMIAPFF---SELSEKYP-SLMFLLVDVDE----------------LVEFSTSWDIKA 99 (139)
Q Consensus 40 ~~~~~~~k~vlv~f~~~~C~~C~~~~~~l---~~~~~~~~-~v~~~~vd~~~----------------~~~~~~~~~v~~ 99 (139)
.++...+|..++.|.++.|++|..+...+ .++.+.+. ++.++.+++.. ..+++..|+|++
T Consensus 36 ksi~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vrs 115 (182)
T COG2143 36 KSISPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVRS 115 (182)
T ss_pred HhcCccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhcccc
Confidence 34446789999999999999999998766 55555554 47888887742 357899999999
Q ss_pred eeEEEEE-eCCeEEEEEeCC-ChHHHHHHHHHH
Q 032496 100 TPTFFFL-KDGQQVDKLVGA-NKPELQKKVAAA 130 (139)
Q Consensus 100 ~Pt~~~~-~~g~~~~~~~g~-~~~~l~~~i~~~ 130 (139)
+||++++ ++|+-+....|. .++++...+.-.
T Consensus 116 tPtfvFfdk~Gk~Il~lPGY~ppe~Fl~vlkYV 148 (182)
T COG2143 116 TPTFVFFDKTGKTILELPGYMPPEQFLAVLKYV 148 (182)
T ss_pred CceEEEEcCCCCEEEecCCCCCHHHHHHHHHHH
Confidence 9999999 889999999999 888888766544
No 123
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=99.25 E-value=8.6e-11 Score=73.36 Aligned_cols=84 Identities=27% Similarity=0.515 Sum_probs=56.8
Q ss_pred hCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhhhhhC---CCcceeEEEEE-eCCeEEEEEeCCC
Q 032496 44 KEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSW---DIKATPTFFFL-KDGQQVDKLVGAN 119 (139)
Q Consensus 44 ~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~---~v~~~Pt~~~~-~~g~~~~~~~g~~ 119 (139)
...+..++.|..+|||.|....|.|.++++..|++.+-.+..|++.++.++| |...+|+++++ ++|+.+.++...
T Consensus 39 ~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p~i~~~~i~rd~~~el~~~~lt~g~~~IP~~I~~d~~~~~lg~wger- 117 (129)
T PF14595_consen 39 IQKPYNILVITETWCGDCARNVPVLAKIAEANPNIEVRIILRDENKELMDQYLTNGGRSIPTFIFLDKDGKELGRWGER- 117 (129)
T ss_dssp --S-EEEEEE--TT-HHHHHHHHHHHHHHHH-TTEEEEEE-HHHHHHHTTTTTT-SS--SSEEEEE-TT--EEEEEESS-
T ss_pred cCCCcEEEEEECCCchhHHHHHHHHHHHHHhCCCCeEEEEEecCChhHHHHHHhCCCeecCEEEEEcCCCCEeEEEcCC-
Confidence 3456788889999999999999999999999988888888889888887766 57899999999 678988887544
Q ss_pred hHHHHHHHH
Q 032496 120 KPELQKKVA 128 (139)
Q Consensus 120 ~~~l~~~i~ 128 (139)
+..+.+++.
T Consensus 118 P~~~~~~~~ 126 (129)
T PF14595_consen 118 PKEVQELVD 126 (129)
T ss_dssp -HHHH----
T ss_pred CHHHhhccc
Confidence 444555444
No 124
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=7.2e-11 Score=86.32 Aligned_cols=100 Identities=19% Similarity=0.402 Sum_probs=82.8
Q ss_pred chhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCC---CcEEEEEeCCcchhhhhhCCCcceeEEEEEe
Q 032496 31 TKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP---SLMFLLVDVDELVEFSTSWDIKATPTFFFLK 107 (139)
Q Consensus 31 ~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~---~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~ 107 (139)
...++...+. ..+...+|.||+|||++|+.+.|.+.+++..+. .+.+..+|++.+..++.+++|.++||+.+|+
T Consensus 150 ~~~~~~~~~~---~~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~~~~~~~~~~~v~~~Pt~~~f~ 226 (383)
T KOG0191|consen 150 TKDNFDETVK---DSDADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDATVHKSLASRLEVRGYPTLKLFP 226 (383)
T ss_pred cccchhhhhh---ccCcceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccchHHHHhhhhcccCCceEEEec
Confidence 4444544443 346788999999999999999999999998874 4888999999999999999999999999998
Q ss_pred CCeE-EEEEeCC-ChHHHHHHHHHHhhc
Q 032496 108 DGQQ-VDKLVGA-NKPELQKKVAAAVDS 133 (139)
Q Consensus 108 ~g~~-~~~~~g~-~~~~l~~~i~~~~~~ 133 (139)
+|.. ...+.+. +.+.+..++......
T Consensus 227 ~~~~~~~~~~~~R~~~~i~~~v~~~~~~ 254 (383)
T KOG0191|consen 227 PGEEDIYYYSGLRDSDSIVSFVEKKERR 254 (383)
T ss_pred CCCcccccccccccHHHHHHHHHhhcCC
Confidence 7777 5556666 899999999887665
No 125
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=99.24 E-value=9.6e-11 Score=65.76 Aligned_cols=68 Identities=16% Similarity=0.457 Sum_probs=53.8
Q ss_pred EEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchh----hhhhCCCcceeEEEEEeCCeEEEEEeCCChHHHHH
Q 032496 50 IANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVE----FSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQK 125 (139)
Q Consensus 50 lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~----~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~l~~ 125 (139)
+..|+++||++|+.+.+.|++ .++.+..+|+++++. +.+.+++.++|++++. |+. ..|.+.+.|.+
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~-----~~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~--~~~---~~g~~~~~i~~ 71 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTS-----KGIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIG--HKI---IVGFDPEKLDQ 71 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHH-----CCCeEEEEeccCCHHHHHHHHHHhCCCcccEEEEC--CEE---EeeCCHHHHHH
Confidence 567999999999999988865 268888999987654 4567999999999984 654 55777787777
Q ss_pred HH
Q 032496 126 KV 127 (139)
Q Consensus 126 ~i 127 (139)
+|
T Consensus 72 ~i 73 (74)
T TIGR02196 72 LL 73 (74)
T ss_pred Hh
Confidence 65
No 126
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=99.23 E-value=2.5e-10 Score=64.97 Aligned_cols=71 Identities=20% Similarity=0.460 Sum_probs=57.7
Q ss_pred EEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhhhhhCCCcceeEEEEEeCCeEEEEEeC-C-ChHHHHHHHH
Q 032496 52 NFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVG-A-NKPELQKKVA 128 (139)
Q Consensus 52 ~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g-~-~~~~l~~~i~ 128 (139)
.+++++|++|..+...++++...+ ++.+-.++....+++ .+|||.++|++++ ||+.+. .| . +.++|..+|+
T Consensus 4 ~v~~~~C~~C~~~~~~~~~~~~~~-~i~~ei~~~~~~~~~-~~ygv~~vPalvI--ng~~~~--~G~~p~~~el~~~l~ 76 (76)
T PF13192_consen 4 KVFSPGCPYCPELVQLLKEAAEEL-GIEVEIIDIEDFEEI-EKYGVMSVPALVI--NGKVVF--VGRVPSKEELKELLE 76 (76)
T ss_dssp EEECSSCTTHHHHHHHHHHHHHHT-TEEEEEEETTTHHHH-HHTT-SSSSEEEE--TTEEEE--ESS--HHHHHHHHHH
T ss_pred EEeCCCCCCcHHHHHHHHHHHHhc-CCeEEEEEccCHHHH-HHcCCCCCCEEEE--CCEEEE--EecCCCHHHHHHHhC
Confidence 347888999999999999999998 588888888766776 9999999999988 888654 47 4 7888888764
No 127
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=99.21 E-value=4.6e-11 Score=78.77 Aligned_cols=48 Identities=10% Similarity=0.187 Sum_probs=40.1
Q ss_pred HHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCC--CcEEEEEeCC
Q 032496 38 KMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP--SLMFLLVDVD 86 (139)
Q Consensus 38 ~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~--~v~~~~vd~~ 86 (139)
.+.++..++|++||.|||+||+.|. ..+.|++++++|. ++.++.+.++
T Consensus 17 ~v~Ls~~~GKvvLVvf~AS~C~~~~-q~~~L~~L~~~y~~~gl~Vlg~p~n 66 (183)
T PRK10606 17 VTTLEKYAGNVLLIVNVASKCGLTP-QYEQLENIQKAWADQGFVVLGFPCN 66 (183)
T ss_pred EEeHHHhCCCEEEEEEEeCCCCCcH-HHHHHHHHHHHHhhCCeEEEEeecc
Confidence 3455567899999999999999996 5889999999986 5888888774
No 128
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=99.21 E-value=1.1e-10 Score=70.50 Aligned_cols=84 Identities=38% Similarity=0.783 Sum_probs=69.1
Q ss_pred CCEEEEEEeCCCChhhhhhhHhHHHHHHhCCC-cEEEEEeCC-cchhhhhhCC--CcceeEEEEEeCCeEEEEEeC--C-
Q 032496 46 GKIVIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVD-ELVEFSTSWD--IKATPTFFFLKDGQQVDKLVG--A- 118 (139)
Q Consensus 46 ~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~-v~~~~vd~~-~~~~~~~~~~--v~~~Pt~~~~~~g~~~~~~~g--~- 118 (139)
++++++.||++||+.|+.+.|.+.++.+++.. +.++.+|.. ....+...|+ +..+|+++++.++..+....+ .
T Consensus 32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 111 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDENPDLAAEFGVAVRSIPTLLLFKDGKEVDRLVGGKVL 111 (127)
T ss_pred CceEEEEEEcCcCHHHHhhchhHHHHHHHhcCCcEEEEEECCCCChHHHHHHhhhhccCCeEEEEeCcchhhhhhhcccC
Confidence 78999999999999999999999999999984 999999997 7889999999 999999998888776555444 3
Q ss_pred ChHHHHHHHHH
Q 032496 119 NKPELQKKVAA 129 (139)
Q Consensus 119 ~~~~l~~~i~~ 129 (139)
....+.....+
T Consensus 112 ~~~~~~~~~~~ 122 (127)
T COG0526 112 PKEALIDALGE 122 (127)
T ss_pred CHHHHHHHhcc
Confidence 44555444433
No 129
>PRK13190 putative peroxiredoxin; Provisional
Probab=99.20 E-value=2.1e-10 Score=76.97 Aligned_cols=94 Identities=17% Similarity=0.208 Sum_probs=69.7
Q ss_pred HHHHhhCCCEEEE-EEeCCCChhhhhhhHhHHHHHHhCC--CcEEEEEeCCc---------------------------c
Q 032496 39 MSEASKEGKIVIA-NFSATWCGPCRMIAPFFSELSEKYP--SLMFLLVDVDE---------------------------L 88 (139)
Q Consensus 39 ~~~~~~~~k~vlv-~f~~~~C~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~---------------------------~ 88 (139)
+.+....+|.++| .||+.||+.|....+.|.++++++. ++.++.+..|. +
T Consensus 20 v~l~d~~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~ 99 (202)
T PRK13190 20 IDLSKYKGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADID 99 (202)
T ss_pred EeHHHhCCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCC
Confidence 4444456887766 5789999999999999999988885 58888887763 1
Q ss_pred hhhhhhCCCc------ceeEEEEE-eCCeEEEEEe-----CCChHHHHHHHHHHhh
Q 032496 89 VEFSTSWDIK------ATPTFFFL-KDGQQVDKLV-----GANKPELQKKVAAAVD 132 (139)
Q Consensus 89 ~~~~~~~~v~------~~Pt~~~~-~~g~~~~~~~-----g~~~~~l~~~i~~~~~ 132 (139)
..+++.||+. .+|+.+++ ++|++..... |.+.+++.+.|+.+..
T Consensus 100 ~~ia~~ygv~~~~~g~~~p~~fiId~~G~I~~~~~~~~~~gr~~~ellr~l~~l~~ 155 (202)
T PRK13190 100 KELAREYNLIDENSGATVRGVFIIDPNQIVRWMIYYPAETGRNIDEIIRITKALQV 155 (202)
T ss_pred hHHHHHcCCccccCCcEEeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHhhh
Confidence 2346677874 58987777 7999887652 3378888888877654
No 130
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=99.19 E-value=5.9e-11 Score=74.89 Aligned_cols=79 Identities=24% Similarity=0.309 Sum_probs=61.2
Q ss_pred HHHhhCCCEEEEEEe-CCCChhhhhhhHhHHHHHHhCC--CcEEEEEeCCcc----------------------hhhhhh
Q 032496 40 SEASKEGKIVIANFS-ATWCGPCRMIAPFFSELSEKYP--SLMFLLVDVDEL----------------------VEFSTS 94 (139)
Q Consensus 40 ~~~~~~~k~vlv~f~-~~~C~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~~----------------------~~~~~~ 94 (139)
.+....+++++|+|| +.||+.|....+.|.++++++. ++.++.|..+.. ..+.+.
T Consensus 16 ~l~~~~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~ 95 (140)
T cd02971 16 SLSDFKGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDSPFSHKAWAEKEGGLNFPLLSDPDGEFAKA 95 (140)
T ss_pred ehHHhCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcccCCCceEEECCChHHHHH
Confidence 333346899999999 7899999999999999998873 688888877532 235667
Q ss_pred CCCccee---------EEEEE-eCCeEEEEEeCC
Q 032496 95 WDIKATP---------TFFFL-KDGQQVDKLVGA 118 (139)
Q Consensus 95 ~~v~~~P---------t~~~~-~~g~~~~~~~g~ 118 (139)
||+...| +++++ ++|+++..+.|.
T Consensus 96 ~g~~~~~~~~~~~~~p~~~lid~~g~i~~~~~~~ 129 (140)
T cd02971 96 YGVLIEKSAGGGLAARATFIIDPDGKIRYVEVEP 129 (140)
T ss_pred cCCccccccccCceeEEEEEECCCCcEEEEEecC
Confidence 7877665 55555 789999998887
No 131
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=99.19 E-value=9.5e-10 Score=66.78 Aligned_cols=107 Identities=20% Similarity=0.369 Sum_probs=87.1
Q ss_pred eEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCC-cEEEEEeCCcchhhhhhCCCcceeEEE
Q 032496 26 VSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVDELVEFSTSWDIKATPTFF 104 (139)
Q Consensus 26 ~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~-v~~~~vd~~~~~~~~~~~~v~~~Pt~~ 104 (139)
+|.+.+....++.+.. .+.+.+|+.|...|.+.|..|...|.+.+++..+ ..++.+|+++-+++.+.|++...|+++
T Consensus 5 Lp~L~s~~~VdqaI~~--t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnfa~IylvdideV~~~~~~~~l~~p~tvm 82 (142)
T KOG3414|consen 5 LPTLHSGWEVDQAILS--TEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNFAVIYLVDIDEVPDFVKMYELYDPPTVM 82 (142)
T ss_pred ccccccHHHHHHHHhc--ccceEEEEEecCCCCchHhhHHHHHHHHHHHHhhceEEEEEecchhhhhhhhhcccCCceEE
Confidence 5677788888887753 3579999999999999999999999999999887 778889999999999999999999999
Q ss_pred EEeCCeEEEEE---------eCC--ChHHHHHHHHHHhhcc
Q 032496 105 FLKDGQQVDKL---------VGA--NKPELQKKVAAAVDSV 134 (139)
Q Consensus 105 ~~~~g~~~~~~---------~g~--~~~~l~~~i~~~~~~~ 134 (139)
+|-+++-+... .+. +.+++.+.++-+-..+
T Consensus 83 fFfn~kHmkiD~gtgdn~Kin~~~~~kq~~Idiie~iyRga 123 (142)
T KOG3414|consen 83 FFFNNKHMKIDLGTGDNNKINFAFEDKQEFIDIIETIYRGA 123 (142)
T ss_pred EEEcCceEEEeeCCCCCceEEEEeccHHHHHHHHHHHHHhh
Confidence 99766655432 233 6777888777664443
No 132
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=99.18 E-value=1.3e-09 Score=75.14 Aligned_cols=90 Identities=12% Similarity=0.219 Sum_probs=73.1
Q ss_pred hCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcc-----------hhhhhhCCCcceeEEEEE-eC-Ce
Q 032496 44 KEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDEL-----------VEFSTSWDIKATPTFFFL-KD-GQ 110 (139)
Q Consensus 44 ~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~-----------~~~~~~~~v~~~Pt~~~~-~~-g~ 110 (139)
..++..|++||...|++|+.+.|.+..++++| ++.++.|++|.. ...++++|+..+|+++++ .+ ++
T Consensus 148 la~~~gL~fFy~~~C~~C~~~apil~~fa~~y-gi~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~Lv~~~t~~ 226 (256)
T TIGR02739 148 LSQSYGLFFFYRGKSPISQKMAPVIQAFAKEY-GISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYLVNPKSQK 226 (256)
T ss_pred HHhceeEEEEECCCCchhHHHHHHHHHHHHHh-CCeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEEEECCCCc
Confidence 34668899999999999999999999999999 577777777643 457889999999998888 55 44
Q ss_pred EEEEEeCC-ChHHHHHHHHHHhhcc
Q 032496 111 QVDKLVGA-NKPELQKKVAAAVDSV 134 (139)
Q Consensus 111 ~~~~~~g~-~~~~l~~~i~~~~~~~ 134 (139)
..-...|. +.++|.+.|..+...-
T Consensus 227 ~~pv~~G~iS~deL~~Ri~~v~~~f 251 (256)
T TIGR02739 227 MSPLAYGFISQDELKERILNVLTQF 251 (256)
T ss_pred EEEEeeccCCHHHHHHHHHHHHhcc
Confidence 44455577 9999999888876654
No 133
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=99.16 E-value=3.3e-10 Score=64.32 Aligned_cols=70 Identities=21% Similarity=0.426 Sum_probs=51.2
Q ss_pred EEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhhhhh-----CCCcceeEEEEEeCCeEEEEEeCCChHHHH
Q 032496 50 IANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTS-----WDIKATPTFFFLKDGQQVDKLVGANKPELQ 124 (139)
Q Consensus 50 lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~-----~~v~~~Pt~~~~~~g~~~~~~~g~~~~~l~ 124 (139)
++.||++||++|+.+++.|.++ ++.+..+|+++++..... +++.++|++ ++.+|+.+. ..+..++.
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~-----~~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i-~~~~g~~l~---~~~~~~~~ 72 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKL-----GAAYEWVDIEEDEGAADRVVSVNNGNMTVPTV-KFADGSFLT---NPSAAQVK 72 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHc-----CCceEEEeCcCCHhHHHHHHHHhCCCceeCEE-EECCCeEec---CCCHHHHH
Confidence 5679999999999999988766 556667888877665555 489999997 467776543 44556665
Q ss_pred HHHH
Q 032496 125 KKVA 128 (139)
Q Consensus 125 ~~i~ 128 (139)
..|.
T Consensus 73 ~~l~ 76 (77)
T TIGR02200 73 AKLQ 76 (77)
T ss_pred HHhh
Confidence 5543
No 134
>PRK15000 peroxidase; Provisional
Probab=99.16 E-value=5.2e-10 Score=74.96 Aligned_cols=87 Identities=21% Similarity=0.266 Sum_probs=67.5
Q ss_pred CCCEEEEEEeC-CCChhhhhhhHhHHHHHHhCC--CcEEEEEeCCcc----------------------------hhhhh
Q 032496 45 EGKIVIANFSA-TWCGPCRMIAPFFSELSEKYP--SLMFLLVDVDEL----------------------------VEFST 93 (139)
Q Consensus 45 ~~k~vlv~f~~-~~C~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~~----------------------------~~~~~ 93 (139)
++|++||+||. .||+.|....+.|.++++++. ++.++.+..|.. ..+++
T Consensus 33 ~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia~ 112 (200)
T PRK15000 33 NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREIQK 112 (200)
T ss_pred CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcHHHH
Confidence 68999999998 599999999999999999986 588888887732 12455
Q ss_pred hCCCc------ceeEEEEE-eCCeEEEEEeCC-----ChHHHHHHHHHHh
Q 032496 94 SWDIK------ATPTFFFL-KDGQQVDKLVGA-----NKPELQKKVAAAV 131 (139)
Q Consensus 94 ~~~v~------~~Pt~~~~-~~g~~~~~~~g~-----~~~~l~~~i~~~~ 131 (139)
.||+. .+|+.+++ ++|+++....+. +.+++.+.|+.+.
T Consensus 113 ~ygv~~~~~g~~~r~tfiID~~G~I~~~~~~~~~~gr~~~eilr~l~al~ 162 (200)
T PRK15000 113 AYGIEHPDEGVALRGSFLIDANGIVRHQVVNDLPLGRNIDEMLRMVDALQ 162 (200)
T ss_pred HcCCccCCCCcEEeEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHhh
Confidence 67876 68877777 799999887653 5667777666543
No 135
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=99.15 E-value=9.6e-10 Score=72.87 Aligned_cols=92 Identities=18% Similarity=0.196 Sum_probs=69.8
Q ss_pred HHHhhCCCEEEEEEe-CCCChhhhhhhHhHHHHHHhCC--CcEEEEEeCCc-------------------------chhh
Q 032496 40 SEASKEGKIVIANFS-ATWCGPCRMIAPFFSELSEKYP--SLMFLLVDVDE-------------------------LVEF 91 (139)
Q Consensus 40 ~~~~~~~k~vlv~f~-~~~C~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~-------------------------~~~~ 91 (139)
.+....+|++||+|| +.||+.|....+.|.++++++. ++.++.|..|. +..+
T Consensus 25 ~L~d~~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~i 104 (187)
T PRK10382 25 TEKDTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGAL 104 (187)
T ss_pred EHHHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchHH
Confidence 334457899999999 9999999999999999999985 58888887763 2345
Q ss_pred hhhCCCc----ce--eEEEEE-eCCeEEEEEeC-----CChHHHHHHHHHHh
Q 032496 92 STSWDIK----AT--PTFFFL-KDGQQVDKLVG-----ANKPELQKKVAAAV 131 (139)
Q Consensus 92 ~~~~~v~----~~--Pt~~~~-~~g~~~~~~~g-----~~~~~l~~~i~~~~ 131 (139)
++.||+. ++ |+.+++ ++|+++..+.. .+.+++.+.|+.+-
T Consensus 105 a~~ygv~~~~~g~~~r~tfIID~~G~I~~~~~~~~~~~~~~~eil~~l~alq 156 (187)
T PRK10382 105 TRNFDNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQ 156 (187)
T ss_pred HHHcCCCcccCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHhhh
Confidence 7788873 55 876666 89999887643 26777777776554
No 136
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=99.15 E-value=1.1e-10 Score=73.96 Aligned_cols=47 Identities=19% Similarity=0.378 Sum_probs=38.8
Q ss_pred HHHhhCCCEEEEEEeCCCChh-hhhhhHhHHHHHHhCCC-----cEEEEEeCC
Q 032496 40 SEASKEGKIVIANFSATWCGP-CRMIAPFFSELSEKYPS-----LMFLLVDVD 86 (139)
Q Consensus 40 ~~~~~~~k~vlv~f~~~~C~~-C~~~~~~l~~~~~~~~~-----v~~~~vd~~ 86 (139)
.+...+++++||.||++||+. |....+.+.++++++.+ +.++.|..|
T Consensus 16 ~l~~~~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d 68 (142)
T cd02968 16 TLSDLKGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVD 68 (142)
T ss_pred chHHhCCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEEC
Confidence 333346899999999999997 99999999999988852 888888764
No 137
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=99.14 E-value=1.9e-10 Score=73.21 Aligned_cols=71 Identities=17% Similarity=0.264 Sum_probs=53.6
Q ss_pred CEEEEEEeCCCChhhhhhhHhHHHHHHhCC--CcEEEEEeCCcc---------------------hhhhhhCCCc-----
Q 032496 47 KIVIANFSATWCGPCRMIAPFFSELSEKYP--SLMFLLVDVDEL---------------------VEFSTSWDIK----- 98 (139)
Q Consensus 47 k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~~---------------------~~~~~~~~v~----- 98 (139)
+.+|++|++.||+.|+...+.|.++++++. ++.++.|..+.. ..+.+.||+.
T Consensus 25 ~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~~g~~~~~~~ 104 (149)
T cd02970 25 PVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESPEKLEAFDKGKFLPFPVYADPDRKLYRALGLVRSLPW 104 (149)
T ss_pred CEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCHHHHHHHHHhcCCCCeEEECCchhHHHHcCceecCcH
Confidence 344554569999999999999999999884 688888887642 3456677773
Q ss_pred ------------------------ceeEEEEE-eCCeEEEEEeC
Q 032496 99 ------------------------ATPTFFFL-KDGQQVDKLVG 117 (139)
Q Consensus 99 ------------------------~~Pt~~~~-~~g~~~~~~~g 117 (139)
..|+.+++ ++|+++..+.|
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~fvid~~g~i~~~~~~ 148 (149)
T cd02970 105 SNTPRALWKNAAIGFRGNDEGDGLQLPGVFVIGPDGTILFAHVD 148 (149)
T ss_pred HHHHHHHhhCcccccccCCCCcccccceEEEECCCCeEEEEecC
Confidence 68877666 78888877655
No 138
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=99.14 E-value=4.3e-10 Score=72.31 Aligned_cols=96 Identities=20% Similarity=0.336 Sum_probs=59.5
Q ss_pred HHHHHHhhCCCEEEEEEeCCCChhhhhhhH-hH--HHHHHhCC-CcEEEEEeCCcchhhhhhC--------CCcceeEEE
Q 032496 37 QKMSEASKEGKIVIANFSATWCGPCRMIAP-FF--SELSEKYP-SLMFLLVDVDELVEFSTSW--------DIKATPTFF 104 (139)
Q Consensus 37 ~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~-~l--~~~~~~~~-~v~~~~vd~~~~~~~~~~~--------~v~~~Pt~~ 104 (139)
+.+..+..++|+++|.++.+||.+|+.|.. .+ .++++.+. ++.-+.+|.++.+++...| |..++|+.+
T Consensus 28 ea~~~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree~Pdid~~y~~~~~~~~~~gGwPl~v 107 (163)
T PF03190_consen 28 EALEKAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREERPDIDKIYMNAVQAMSGSGGWPLTV 107 (163)
T ss_dssp HHHHHHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT-HHHHHHHHHHHHHHHS---SSEEE
T ss_pred HHHHHHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEeccccCccHHHHHHHHHHHhcCCCCCCceE
Confidence 456666688999999999999999999874 33 33333332 3666778999999998887 788999988
Q ss_pred EE-eCCeEEEEEeCCCh------HHHHHHHHHHhh
Q 032496 105 FL-KDGQQVDKLVGANK------PELQKKVAAAVD 132 (139)
Q Consensus 105 ~~-~~g~~~~~~~g~~~------~~l~~~i~~~~~ 132 (139)
+. .+|+++........ ..|...|.++..
T Consensus 108 fltPdg~p~~~~tY~P~~~~~g~~~f~~~l~~i~~ 142 (163)
T PF03190_consen 108 FLTPDGKPFFGGTYFPPEDRYGRPGFLQLLERIAE 142 (163)
T ss_dssp EE-TTS-EEEEESS--SS-BTTB--HHHHHHHHHH
T ss_pred EECCCCCeeeeeeecCCCCCCCCccHHHHHHHHHH
Confidence 88 99999887544322 356655555433
No 139
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=99.13 E-value=1.6e-10 Score=73.37 Aligned_cols=71 Identities=31% Similarity=0.651 Sum_probs=56.7
Q ss_pred hCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCC----CcEEEEEeCCcc-------------------------hhhhhh
Q 032496 44 KEGKIVIANFSATWCGPCRMIAPFFSELSEKYP----SLMFLLVDVDEL-------------------------VEFSTS 94 (139)
Q Consensus 44 ~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~----~v~~~~vd~~~~-------------------------~~~~~~ 94 (139)
..||.|.+||.+.||++|+.+.|.|.++++... .+.++-|+.|.+ .++.++
T Consensus 31 l~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~k 110 (157)
T KOG2501|consen 31 LQGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEK 110 (157)
T ss_pred hCCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHh
Confidence 568999999999999999999999988887764 255555555431 346778
Q ss_pred CCCcceeEEEEE-eCCeEEEE
Q 032496 95 WDIKATPTFFFL-KDGQQVDK 114 (139)
Q Consensus 95 ~~v~~~Pt~~~~-~~g~~~~~ 114 (139)
|.|.++|+++++ .+|..+..
T Consensus 111 y~v~~iP~l~i~~~dG~~v~~ 131 (157)
T KOG2501|consen 111 YEVKGIPALVILKPDGTVVTE 131 (157)
T ss_pred cccCcCceeEEecCCCCEehH
Confidence 999999999988 78877654
No 140
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=99.12 E-value=3.5e-09 Score=72.69 Aligned_cols=89 Identities=15% Similarity=0.160 Sum_probs=70.7
Q ss_pred CCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCc-----------chhhhhhCCCcceeEEEEE-eC-CeE
Q 032496 45 EGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDE-----------LVEFSTSWDIKATPTFFFL-KD-GQQ 111 (139)
Q Consensus 45 ~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~-----------~~~~~~~~~v~~~Pt~~~~-~~-g~~ 111 (139)
.++..|++||...|++|+.+.|.+..++++| ++.++.|++|. +...+.++||..+|+++++ .+ ++.
T Consensus 142 a~~~GL~fFy~s~Cp~C~~~aPil~~fa~~y-g~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv~~~t~~~ 220 (248)
T PRK13703 142 AEHYGLMFFYRGQDPIDGQLAQVINDFRDTY-GLSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLVDPKSGSV 220 (248)
T ss_pred HhcceEEEEECCCCchhHHHHHHHHHHHHHh-CCeEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEEECCCCcE
Confidence 4668899999999999999999999999999 56666666653 2345678999999998888 44 455
Q ss_pred EEEEeCC-ChHHHHHHHHHHhhcc
Q 032496 112 VDKLVGA-NKPELQKKVAAAVDSV 134 (139)
Q Consensus 112 ~~~~~g~-~~~~l~~~i~~~~~~~ 134 (139)
.-...|. +.++|.+.|..+...-
T Consensus 221 ~pv~~G~iS~deL~~Ri~~v~t~~ 244 (248)
T PRK13703 221 RPLSYGFITQDDLAKRFLNVSTDF 244 (248)
T ss_pred EEEeeccCCHHHHHHHHHHHHhcc
Confidence 5555688 9999999888776544
No 141
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=99.10 E-value=1.9e-09 Score=66.06 Aligned_cols=81 Identities=25% Similarity=0.482 Sum_probs=55.5
Q ss_pred eechhHHHHHHHHHhhCCCEEEEEEeCC-------CChhhhhhhHhHHHHHHhCC-CcEEEEEeCCcch-------hhhh
Q 032496 29 VTTKDIWDQKMSEASKEGKIVIANFSAT-------WCGPCRMIAPFFSELSEKYP-SLMFLLVDVDELV-------EFST 93 (139)
Q Consensus 29 i~~~~~~~~~~~~~~~~~k~vlv~f~~~-------~C~~C~~~~~~l~~~~~~~~-~v~~~~vd~~~~~-------~~~~ 93 (139)
+..-+++.+.+.....++++++|+|+++ |||.|....|.+++.....+ +..++.+.+...+ .+..
T Consensus 2 v~gy~~~~~~~~~~~~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~ 81 (119)
T PF06110_consen 2 VRGYDEFEKLVEEYENSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRT 81 (119)
T ss_dssp EECHHHHHHHHHC--TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH
T ss_pred ccCHHHHHHHHHHhhcCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceE
Confidence 3456777777776556778999999964 99999999999998877766 5888888775322 3333
Q ss_pred --hCCCcceeEEEEEeCC
Q 032496 94 --SWDIKATPTFFFLKDG 109 (139)
Q Consensus 94 --~~~v~~~Pt~~~~~~g 109 (139)
++++.++||++-+..+
T Consensus 82 ~p~~~l~~IPTLi~~~~~ 99 (119)
T PF06110_consen 82 DPDLKLKGIPTLIRWETG 99 (119)
T ss_dssp --CC---SSSEEEECTSS
T ss_pred cceeeeeecceEEEECCC
Confidence 5999999999999766
No 142
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=6.6e-10 Score=71.03 Aligned_cols=110 Identities=18% Similarity=0.160 Sum_probs=84.2
Q ss_pred ccCCCceEEeechhHHHHHHHHHhhCCCEEEEEEe-CCCChhhhhhhHhHHHHHHhCC--CcEEEEEeCCc---------
Q 032496 20 EFAGGNVSLVTTKDIWDQKMSEASKEGKIVIANFS-ATWCGPCRMIAPFFSELSEKYP--SLMFLLVDVDE--------- 87 (139)
Q Consensus 20 ~~~~~~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~-~~~C~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~--------- 87 (139)
...|..+|++...++....+.++...+++|||+|| ..+++.|....-.+++...++. ++.++.|..|.
T Consensus 4 l~~G~~aPdF~Lp~~~g~~v~Lsd~~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~Ds~~~~~~F~~ 83 (157)
T COG1225 4 LKVGDKAPDFELPDQDGETVSLSDLRGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPDSPKSHKKFAE 83 (157)
T ss_pred CCCCCcCCCeEeecCCCCEEehHHhcCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHH
Confidence 35677888888888777778888899999999999 8899999999999999888876 58888887753
Q ss_pred ------------chhhhhhCCCcc------------ee-EEEEEeCCeEEEEEeCC-C---hHHHHHHHHH
Q 032496 88 ------------LVEFSTSWDIKA------------TP-TFFFLKDGQQVDKLVGA-N---KPELQKKVAA 129 (139)
Q Consensus 88 ------------~~~~~~~~~v~~------------~P-t~~~~~~g~~~~~~~g~-~---~~~l~~~i~~ 129 (139)
+..+++.||+.. .+ ||++.++|++...+... . .+++.+.|.+
T Consensus 84 k~~L~f~LLSD~~~~v~~~ygv~~~k~~~gk~~~~~~R~TfvId~dG~I~~~~~~v~~~~h~~~vl~~l~~ 154 (157)
T COG1225 84 KHGLTFPLLSDEDGEVAEAYGVWGEKKMYGKEYMGIERSTFVIDPDGKIRYVWRKVKVKGHADEVLAALKK 154 (157)
T ss_pred HhCCCceeeECCcHHHHHHhCcccccccCccccccccceEEEECCCCeEEEEecCCCCcccHHHHHHHHHH
Confidence 455688888744 22 56666999999998655 3 3344444443
No 143
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=99.08 E-value=7.3e-09 Score=63.54 Aligned_cols=98 Identities=18% Similarity=0.303 Sum_probs=77.0
Q ss_pred HHHHHHHHHhhCCCEEEEEEeCC----CChhhhhhh--HhHHHHHHhCCCcEEEEEeCCcc--hhhhhhCCCcceeEEEE
Q 032496 34 IWDQKMSEASKEGKIVIANFSAT----WCGPCRMIA--PFFSELSEKYPSLMFLLVDVDEL--VEFSTSWDIKATPTFFF 105 (139)
Q Consensus 34 ~~~~~~~~~~~~~k~vlv~f~~~----~C~~C~~~~--~~l~~~~~~~~~v~~~~vd~~~~--~~~~~~~~v~~~Pt~~~ 105 (139)
++.+.+..+..+.|.++|+++++ ||.+|+... |.+.+..+. ++.++..|+... ..++..+++.++|++.+
T Consensus 5 s~~eAl~~ak~e~K~llVylhs~~~~~~~~fc~~~l~~~~v~~~ln~--~fv~w~~dv~~~eg~~la~~l~~~~~P~~~~ 82 (116)
T cd02991 5 TYSQALNDAKQELRFLLVYLHGDDHQDTDEFCRNTLCAPEVIEYINT--RMLFWACSVAKPEGYRVSQALRERTYPFLAM 82 (116)
T ss_pred cHHHHHHHHHhhCCEEEEEEeCCCCccHHHHHHHHcCCHHHHHHHHc--CEEEEEEecCChHHHHHHHHhCCCCCCEEEE
Confidence 56777888888899999999999 889998753 555555543 577788888644 46788899999999888
Q ss_pred E--eCC--eEEEEEeCC-ChHHHHHHHHHHhhc
Q 032496 106 L--KDG--QQVDKLVGA-NKPELQKKVAAAVDS 133 (139)
Q Consensus 106 ~--~~g--~~~~~~~g~-~~~~l~~~i~~~~~~ 133 (139)
+ +++ .++.+..|. ++++|...|..++..
T Consensus 83 l~~~~~~~~vv~~i~G~~~~~~ll~~L~~~~~~ 115 (116)
T cd02991 83 IMLKDNRMTIVGRLEGLIQPEDLINRLTFIMDA 115 (116)
T ss_pred EEecCCceEEEEEEeCCCCHHHHHHHHHHHHhc
Confidence 8 233 468889999 999999999887653
No 144
>PRK13599 putative peroxiredoxin; Provisional
Probab=99.08 E-value=1e-09 Score=74.26 Aligned_cols=88 Identities=15% Similarity=0.200 Sum_probs=66.1
Q ss_pred hhCCCEE-EEEEeCCCChhhhhhhHhHHHHHHhCC--CcEEEEEeCCcc---------------------------hhhh
Q 032496 43 SKEGKIV-IANFSATWCGPCRMIAPFFSELSEKYP--SLMFLLVDVDEL---------------------------VEFS 92 (139)
Q Consensus 43 ~~~~k~v-lv~f~~~~C~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~~---------------------------~~~~ 92 (139)
...++++ |+.|++.||+.|....+.|.++++++. ++.++.+.+|.. ..++
T Consensus 25 ~~~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil~D~~~~va 104 (215)
T PRK13599 25 DYAGKWFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVIADDLGKVS 104 (215)
T ss_pred HHCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEEECCCchHH
Confidence 3467765 578889999999999999999999984 688888888742 2346
Q ss_pred hhCCCc-------ceeEEEEE-eCCeEEEEEeC-----CChHHHHHHHHHH
Q 032496 93 TSWDIK-------ATPTFFFL-KDGQQVDKLVG-----ANKPELQKKVAAA 130 (139)
Q Consensus 93 ~~~~v~-------~~Pt~~~~-~~g~~~~~~~g-----~~~~~l~~~i~~~ 130 (139)
+.||+. .+|+++++ ++|+++..+.. .+.+++.+.|+.+
T Consensus 105 ~~yg~~~~~~~~~~~R~tfIID~dG~Ir~~~~~p~~~gr~~~eilr~l~~l 155 (215)
T PRK13599 105 NQLGMIHPGKGTNTVRAVFIVDDKGTIRLIMYYPQEVGRNVDEILRALKAL 155 (215)
T ss_pred HHcCCCccCCCCceeeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHHHHh
Confidence 677763 57887777 79999887642 2567777777665
No 145
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=99.05 E-value=3.2e-09 Score=73.54 Aligned_cols=114 Identities=16% Similarity=0.079 Sum_probs=79.0
Q ss_pred CcccCCCceEEeechh---HHHHHHHHHhh-CCCEEEEEEe-CCCChhhhhhhHhHHHHHHhCC--CcEEEEEeCCcc--
Q 032496 18 PVEFAGGNVSLVTTKD---IWDQKMSEASK-EGKIVIANFS-ATWCGPCRMIAPFFSELSEKYP--SLMFLLVDVDEL-- 88 (139)
Q Consensus 18 ~~~~~~~~~~~i~~~~---~~~~~~~~~~~-~~k~vlv~f~-~~~C~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~~-- 88 (139)
+....|..+|++...+ .-...+.+... .++++|++|| +.||+.|....+.|.++++++. ++.++.|..|..
T Consensus 66 ~~~~vGd~aPdF~l~~~~~g~~~~vsLsd~~kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds~~~ 145 (261)
T PTZ00137 66 TSSLVGKLMPSFKGTALLNDDLVQFNSSDYFKDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDSPFS 145 (261)
T ss_pred ccccCCCCCCCCEeecccCCCceEEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHH
Confidence 3345667777776332 11112344444 6778888888 8999999999999999999985 588888877641
Q ss_pred --------------------------hhhhhhCCCc-----ceeEEEEE-eCCeEEEEEeC-----CChHHHHHHHHHHh
Q 032496 89 --------------------------VEFSTSWDIK-----ATPTFFFL-KDGQQVDKLVG-----ANKPELQKKVAAAV 131 (139)
Q Consensus 89 --------------------------~~~~~~~~v~-----~~Pt~~~~-~~g~~~~~~~g-----~~~~~l~~~i~~~~ 131 (139)
..+++.||+. ..|+.+++ ++|+++..+.. .+.+++.+.|+.+.
T Consensus 146 h~aw~~~~~~~~g~~~l~fPlLsD~~~~iakayGv~~~~g~a~R~tFIID~dG~I~~~~~~~~~~gr~v~eiLr~l~alq 225 (261)
T PTZ00137 146 HKAWKELDVRQGGVSPLKFPLFSDISREVSKSFGLLRDEGFSHRASVLVDKAGVVKHVAVYDLGLGRSVDETLRLFDAVQ 225 (261)
T ss_pred HHHHHhhhhhhccccCcceEEEEcCChHHHHHcCCCCcCCceecEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHhc
Confidence 2356778874 47877777 79999987632 26777777766553
No 146
>PRK13191 putative peroxiredoxin; Provisional
Probab=99.05 E-value=2e-09 Score=72.85 Aligned_cols=109 Identities=12% Similarity=0.137 Sum_probs=72.7
Q ss_pred CCCceEEeechhHHHHHHHHHhhCCCEEEE-EEeCCCChhhhhhhHhHHHHHHhCC--CcEEEEEeCCcc----------
Q 032496 22 AGGNVSLVTTKDIWDQKMSEASKEGKIVIA-NFSATWCGPCRMIAPFFSELSEKYP--SLMFLLVDVDEL---------- 88 (139)
Q Consensus 22 ~~~~~~~i~~~~~~~~~~~~~~~~~k~vlv-~f~~~~C~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~~---------- 88 (139)
.|..+|++...+...........++|+++| .|++.||+.|....+.|.+++.++. ++.++.+++|..
T Consensus 9 iG~~aPdF~l~~~~G~~~l~~~~~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds~~~h~aw~~~~ 88 (215)
T PRK13191 9 IGEKFPEMEVITTHGKIKLPDDYKGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSNISHIEWVMWI 88 (215)
T ss_pred CCCcCCCCEeecCCCCEEcHHHhCCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhH
Confidence 444555554333222222222246776665 7779999999999999999999984 688888888732
Q ss_pred -----------------hhhhhhCCCc-------ceeEEEEE-eCCeEEEEEeC-----CChHHHHHHHHHH
Q 032496 89 -----------------VEFSTSWDIK-------ATPTFFFL-KDGQQVDKLVG-----ANKPELQKKVAAA 130 (139)
Q Consensus 89 -----------------~~~~~~~~v~-------~~Pt~~~~-~~g~~~~~~~g-----~~~~~l~~~i~~~ 130 (139)
..+++.||+. ..|+.+++ .+|++.....+ .+.+++.+.|+.+
T Consensus 89 ~~~~~~~i~fPllsD~~~~ia~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~al 160 (215)
T PRK13191 89 EKNLKVEVPFPIIADPMGNVAKRLGMIHAESSTATVRAVFIVDDKGTVRLILYYPMEIGRNIDEILRAIRAL 160 (215)
T ss_pred HHhcCCCCceEEEECCchHHHHHcCCcccccCCceeEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 2345667763 36766666 89999887543 2677777777665
No 147
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=99.05 E-value=1.9e-09 Score=72.44 Aligned_cols=91 Identities=16% Similarity=0.157 Sum_probs=64.4
Q ss_pred HHhhCC-CEE-EEEEeCCCChhhhhhhHhHHHHHHhCC--CcEEEEEeCCcc---------------------------h
Q 032496 41 EASKEG-KIV-IANFSATWCGPCRMIAPFFSELSEKYP--SLMFLLVDVDEL---------------------------V 89 (139)
Q Consensus 41 ~~~~~~-k~v-lv~f~~~~C~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~~---------------------------~ 89 (139)
+....+ +++ |+.||+.||+.|....+.|.++++++. ++.++.+..|.. .
T Consensus 19 l~d~~g~k~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~~~~~~~~~~~i~~~~~~~~~fpil~D~~~ 98 (203)
T cd03016 19 FHDYLGDSWGILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDSVESHIKWIEDIEEYTGVEIPFPIIADPDR 98 (203)
T ss_pred HHHHcCCCEEEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceeEEECchH
Confidence 333445 554 557889999999999999999998885 588888887642 2
Q ss_pred hhhhhCCCc----cee----E-EEEEeCCeEEEEEeC-----CChHHHHHHHHHHh
Q 032496 90 EFSTSWDIK----ATP----T-FFFLKDGQQVDKLVG-----ANKPELQKKVAAAV 131 (139)
Q Consensus 90 ~~~~~~~v~----~~P----t-~~~~~~g~~~~~~~g-----~~~~~l~~~i~~~~ 131 (139)
.+++.||+. +.| + +++.++|+++....+ .+.+++.+.|+++.
T Consensus 99 ~ia~~yg~~~~~~~~~~~~r~~fiID~~G~I~~~~~~~~~~gr~~~ell~~l~~lq 154 (203)
T cd03016 99 EVAKLLGMIDPDAGSTLTVRAVFIIDPDKKIRLILYYPATTGRNFDEILRVVDALQ 154 (203)
T ss_pred HHHHHcCCccccCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHHh
Confidence 456678865 233 3 444489999887754 25677777776653
No 148
>PRK13189 peroxiredoxin; Provisional
Probab=99.04 E-value=2.3e-09 Score=72.94 Aligned_cols=110 Identities=15% Similarity=0.201 Sum_probs=73.5
Q ss_pred cCCCceEEeechhHHHHHHHHHh-hCCCEEE-EEEeCCCChhhhhhhHhHHHHHHhCC--CcEEEEEeCCcc--------
Q 032496 21 FAGGNVSLVTTKDIWDQKMSEAS-KEGKIVI-ANFSATWCGPCRMIAPFFSELSEKYP--SLMFLLVDVDEL-------- 88 (139)
Q Consensus 21 ~~~~~~~~i~~~~~~~~~~~~~~-~~~k~vl-v~f~~~~C~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~~-------- 88 (139)
..|..+|++........ +.+.. ..+|.++ +.||+.||+.|....+.|.++++++. ++.++.+.+|..
T Consensus 10 ~vG~~aPdF~~~~~~g~-~~l~d~~~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~~~~h~aw~~ 88 (222)
T PRK13189 10 LIGDKFPEFEVKTTHGP-IKLPDDYKGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQVFSHIKWVE 88 (222)
T ss_pred cCCCcCCCcEeEcCCCC-EeeHHHhCCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHH
Confidence 34555666554332222 23322 3677555 56779999999999999999998885 688888877632
Q ss_pred -------------------hhhhhhCCCc-------ceeEEEEE-eCCeEEEEEeC-----CChHHHHHHHHHHh
Q 032496 89 -------------------VEFSTSWDIK-------ATPTFFFL-KDGQQVDKLVG-----ANKPELQKKVAAAV 131 (139)
Q Consensus 89 -------------------~~~~~~~~v~-------~~Pt~~~~-~~g~~~~~~~g-----~~~~~l~~~i~~~~ 131 (139)
..+++.||+. .+|+.+++ ++|++.....+ .+.+++.+.|+.+.
T Consensus 89 ~~~~~~g~~i~fPllsD~~~~ia~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~alq 163 (222)
T PRK13189 89 WIKEKLGVEIEFPIIADDRGEIAKKLGMISPGKGTNTVRAVFIIDPKGIIRAILYYPQEVGRNMDEILRLVKALQ 163 (222)
T ss_pred hHHHhcCcCcceeEEEcCccHHHHHhCCCccccCCCceeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHhh
Confidence 2346677764 46766666 89999877653 36777777777653
No 149
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=99.04 E-value=1.8e-09 Score=58.20 Aligned_cols=60 Identities=28% Similarity=0.559 Sum_probs=51.1
Q ss_pred EEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhhhh---hCCCcceeEEEEEeCC
Q 032496 50 IANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFST---SWDIKATPTFFFLKDG 109 (139)
Q Consensus 50 lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~---~~~v~~~Pt~~~~~~g 109 (139)
++.||+.||++|..+.+.+.++....+++.+..++++....... .+++..+|+++++..|
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ 63 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAELALLNKGVKFEAVDVDEDPALEKELKRYGVGGVPTLVVFGPG 63 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHHHhhCCCcEEEEEEcCCChHHhhHHHhCCCccccEEEEEeCC
Confidence 47899999999999999999984445579999999998776554 7899999999999766
No 150
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=99.01 E-value=5.6e-09 Score=60.60 Aligned_cols=75 Identities=16% Similarity=0.330 Sum_probs=56.9
Q ss_pred EEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcch----hhhhhCC--CcceeEEEEEeCCeEEEEEeCCChHHH
Q 032496 50 IANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELV----EFSTSWD--IKATPTFFFLKDGQQVDKLVGANKPEL 123 (139)
Q Consensus 50 lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~----~~~~~~~--v~~~Pt~~~~~~g~~~~~~~g~~~~~l 123 (139)
++.|+.+||++|.++...|+++..++.++.+..+|++.+. ++...++ +..+|++++ +|+.+. ..++|
T Consensus 3 v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~ifi--~g~~ig-----g~~~~ 75 (85)
T PRK11200 3 VVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEGISKADLEKTVGKPVETVPQIFV--DQKHIG-----GCTDF 75 (85)
T ss_pred EEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEEE--CCEEEc-----CHHHH
Confidence 6779999999999999999999887778888899888642 4544444 589999876 776543 34667
Q ss_pred HHHHHHHh
Q 032496 124 QKKVAAAV 131 (139)
Q Consensus 124 ~~~i~~~~ 131 (139)
.+++.+.+
T Consensus 76 ~~~~~~~~ 83 (85)
T PRK11200 76 EAYVKENL 83 (85)
T ss_pred HHHHHHhc
Confidence 66666543
No 151
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=99.01 E-value=3e-09 Score=71.26 Aligned_cols=92 Identities=21% Similarity=0.245 Sum_probs=67.0
Q ss_pred HHHHhhCCCEEEEEEe-CCCChhhhhhhHhHHHHHHhCC--CcEEEEEeCCcc---------------------------
Q 032496 39 MSEASKEGKIVIANFS-ATWCGPCRMIAPFFSELSEKYP--SLMFLLVDVDEL--------------------------- 88 (139)
Q Consensus 39 ~~~~~~~~k~vlv~f~-~~~C~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~~--------------------------- 88 (139)
+.+....+|+++|+|| +.||+.|....+.|.++++++. ++.++.|+.|..
T Consensus 29 v~l~d~~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~~~~~~~~~~~~~~~~~~~~~~fpll~D~ 108 (199)
T PTZ00253 29 ISLSSYKGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDSEYAHLQWTLQERKKGGLGTMAIPMLADK 108 (199)
T ss_pred EeHHHHCCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHhChHhhCCccccccceEECc
Confidence 4455567899999999 5889999999999999999986 688888887632
Q ss_pred -hhhhhhCCCc------ceeEEEEE-eCCeEEEEEeCC-----ChHHHHHHHHHH
Q 032496 89 -VEFSTSWDIK------ATPTFFFL-KDGQQVDKLVGA-----NKPELQKKVAAA 130 (139)
Q Consensus 89 -~~~~~~~~v~------~~Pt~~~~-~~g~~~~~~~g~-----~~~~l~~~i~~~ 130 (139)
.++++.||+. .+|+.+++ ++|+++....+. +.+++.+.|..+
T Consensus 109 ~~~ia~~ygv~~~~~g~~~r~~fiID~~G~i~~~~~~~~~~~r~~~e~l~~l~a~ 163 (199)
T PTZ00253 109 TKSIARSYGVLEEEQGVAYRGLFIIDPKGMLRQITVNDMPVGRNVEEVLRLLEAF 163 (199)
T ss_pred HhHHHHHcCCcccCCCceEEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHhh
Confidence 2356678875 35766656 899998877653 445555555444
No 152
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=98.99 E-value=5.8e-09 Score=71.42 Aligned_cols=80 Identities=18% Similarity=0.357 Sum_probs=61.0
Q ss_pred CCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCC--------------------------------------
Q 032496 45 EGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVD-------------------------------------- 86 (139)
Q Consensus 45 ~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~-------------------------------------- 86 (139)
.++.+++.|.-+.||+|+++++.+.++.+. ++.+..+...
T Consensus 106 ~~k~~I~vFtDp~CpyCkkl~~~l~~~~~~--~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~~~~ 183 (232)
T PRK10877 106 QEKHVITVFTDITCGYCHKLHEQMKDYNAL--GITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVSPAS 183 (232)
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHHhcC--CeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCCccc
Confidence 467889999999999999999999888653 4444333221
Q ss_pred ------cchhhhhhCCCcceeEEEEEeCCeEEEEEeCC-ChHHHHHHHHHH
Q 032496 87 ------ELVEFSTSWDIKATPTFFFLKDGQQVDKLVGA-NKPELQKKVAAA 130 (139)
Q Consensus 87 ------~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~i~~~ 130 (139)
++..+++++||.++|+++ +.||+.+ .|. +.++|.++|++.
T Consensus 184 c~~~v~~~~~la~~lgi~gTPtiv-~~~G~~~---~G~~~~~~L~~~l~~~ 230 (232)
T PRK10877 184 CDVDIADHYALGVQFGVQGTPAIV-LSNGTLV---PGYQGPKEMKAFLDEH 230 (232)
T ss_pred ccchHHHhHHHHHHcCCccccEEE-EcCCeEe---eCCCCHHHHHHHHHHc
Confidence 134467789999999999 6788754 687 889999988764
No 153
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=98.95 E-value=3.3e-08 Score=59.08 Aligned_cols=94 Identities=21% Similarity=0.294 Sum_probs=69.0
Q ss_pred EeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCC-cEEEEEeCCcchh----hhhhCCCc-cee
Q 032496 28 LVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVDELVE----FSTSWDIK-ATP 101 (139)
Q Consensus 28 ~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~-v~~~~vd~~~~~~----~~~~~~v~-~~P 101 (139)
.+.+.+++++.+..+ .+++++++=.++.|+-+......+++.....++ +.++.+|+-++++ ++++|||. .-|
T Consensus 3 ~L~t~eql~~i~~~S--~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~HeSP 80 (105)
T PF11009_consen 3 PLTTEEQLEEILEES--KEKPVLIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVKHESP 80 (105)
T ss_dssp E--SHHHHHHHHHH-----SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT----SS
T ss_pred ccCCHHHHHHHHHhc--ccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCCcCCC
Confidence 567788888877543 478999999999999999999999999998886 9999999988765 57889985 789
Q ss_pred EEEEEeCCeEEEEEeCC--ChHHH
Q 032496 102 TFFFLKDGQQVDKLVGA--NKPEL 123 (139)
Q Consensus 102 t~~~~~~g~~~~~~~g~--~~~~l 123 (139)
.+++++||+.+...... +.+.|
T Consensus 81 Q~ili~~g~~v~~aSH~~It~~~l 104 (105)
T PF11009_consen 81 QVILIKNGKVVWHASHWDITAEAL 104 (105)
T ss_dssp EEEEEETTEEEEEEEGGG-SHHHH
T ss_pred cEEEEECCEEEEECccccCCHHhc
Confidence 99999999999876544 55554
No 154
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=98.94 E-value=7.6e-09 Score=59.61 Aligned_cols=60 Identities=18% Similarity=0.385 Sum_probs=45.5
Q ss_pred EEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcch-----hhhhhCCCcceeEEEEEeCCeEE
Q 032496 50 IANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELV-----EFSTSWDIKATPTFFFLKDGQQV 112 (139)
Q Consensus 50 lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~-----~~~~~~~v~~~Pt~~~~~~g~~~ 112 (139)
|+.|+++||++|+.+.+.|.++.-. +.+.++.++.+.+. .+.+.+++.++|++++ +|+.+
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~i~-~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~i--~g~~i 65 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLNVK-PAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIFI--NGKFI 65 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCC-CCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEEE--CCEEE
Confidence 4679999999999999999988621 13777888776543 2566789999999865 77654
No 155
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.92 E-value=2.1e-08 Score=60.52 Aligned_cols=78 Identities=23% Similarity=0.462 Sum_probs=60.9
Q ss_pred echhHHHHHHHHHhhCCCEEEEEEeC--------CCChhhhhhhHhHHHHHHhCC-CcEEEEEeCCcc-------hhhhh
Q 032496 30 TTKDIWDQKMSEASKEGKIVIANFSA--------TWCGPCRMIAPFFSELSEKYP-SLMFLLVDVDEL-------VEFST 93 (139)
Q Consensus 30 ~~~~~~~~~~~~~~~~~k~vlv~f~~--------~~C~~C~~~~~~l~~~~~~~~-~v~~~~vd~~~~-------~~~~~ 93 (139)
...++|++.+... .+++.++++|++ +|||.|....|.+.+..+..+ ++.|+.++..+. ..+..
T Consensus 10 ~g~e~~~~~~~~~-~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~FR~ 88 (128)
T KOG3425|consen 10 PGYESFEETLKNV-ENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANPFRK 88 (128)
T ss_pred chHHHHHHHHHHH-hCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCcccc
Confidence 3466777777655 456679999986 499999999999999888776 599999998643 34556
Q ss_pred hCCC-cceeEEEEEeC
Q 032496 94 SWDI-KATPTFFFLKD 108 (139)
Q Consensus 94 ~~~v-~~~Pt~~~~~~ 108 (139)
..++ .++||++-+++
T Consensus 89 d~~~lt~vPTLlrw~~ 104 (128)
T KOG3425|consen 89 DPGILTAVPTLLRWKR 104 (128)
T ss_pred CCCceeecceeeEEcC
Confidence 6666 99999999875
No 156
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=3.4e-09 Score=70.40 Aligned_cols=91 Identities=24% Similarity=0.503 Sum_probs=75.0
Q ss_pred CceEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCC--CcEEEEEeCCcchhhhhhCCC----
Q 032496 24 GNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP--SLMFLLVDVDELVEFSTSWDI---- 97 (139)
Q Consensus 24 ~~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~~~~~~~~~~v---- 97 (139)
+.+..+...+.++..+. ..+...-+|.|++.|.+.|..+.|.+.++..+|. +++|-.+|+...++.+.+|+|
T Consensus 124 e~ikyf~~~q~~deel~--rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGrfpd~a~kfris~s~ 201 (265)
T KOG0914|consen 124 ETIKYFTNMQLEDEELD--RNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGRFPDVAAKFRISLSP 201 (265)
T ss_pred hheeeecchhhHHHHhc--cCCceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeeccCcChHHheeeccCc
Confidence 34566656665555553 2345688999999999999999999999999996 499999999999999999987
Q ss_pred --cceeEEEEEeCCeEEEEEe
Q 032496 98 --KATPTFFFLKDGQQVDKLV 116 (139)
Q Consensus 98 --~~~Pt~~~~~~g~~~~~~~ 116 (139)
++.||+++|++|+.+.+..
T Consensus 202 ~srQLPT~ilFq~gkE~~RrP 222 (265)
T KOG0914|consen 202 GSRQLPTYILFQKGKEVSRRP 222 (265)
T ss_pred ccccCCeEEEEccchhhhcCc
Confidence 4789999999999887654
No 157
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=98.85 E-value=3.1e-08 Score=57.61 Aligned_cols=73 Identities=15% Similarity=0.319 Sum_probs=54.1
Q ss_pred EEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcc----hhhhhhCCC--cceeEEEEEeCCeEEEEEeCCChHHH
Q 032496 50 IANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDEL----VEFSTSWDI--KATPTFFFLKDGQQVDKLVGANKPEL 123 (139)
Q Consensus 50 lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~----~~~~~~~~v--~~~Pt~~~~~~g~~~~~~~g~~~~~l 123 (139)
|+.|..+||++|..+...|.++...++++.+..+|.+.+ .++.+.++- ..+|++++ +|+.+. ..++|
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~ifi--~g~~ig-----G~~dl 74 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAEGISKADLEKTVGKPVETVPQIFV--DEKHVG-----GCTDF 74 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEEE--CCEEec-----CHHHH
Confidence 577899999999999999999877766778888888743 345566663 79999976 665432 34666
Q ss_pred HHHHHH
Q 032496 124 QKKVAA 129 (139)
Q Consensus 124 ~~~i~~ 129 (139)
.+++.+
T Consensus 75 ~~~~~~ 80 (86)
T TIGR02183 75 EQLVKE 80 (86)
T ss_pred HHHHHh
Confidence 666554
No 158
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=98.85 E-value=2.3e-07 Score=57.20 Aligned_cols=106 Identities=21% Similarity=0.400 Sum_probs=81.5
Q ss_pred eEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCC-cEEEEEeCCcchhhhhhCCCccee-EE
Q 032496 26 VSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVDELVEFSTSWDIKATP-TF 103 (139)
Q Consensus 26 ~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~-v~~~~vd~~~~~~~~~~~~v~~~P-t~ 103 (139)
++.+.+.-..++.+.. ..+|.+++.|...|-+.|..+...|.+.+++..+ ..++.+|.++-+++.+.|.+. .| |+
T Consensus 2 L~~L~s~~~VDqAI~~--e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~a~IY~vDi~~Vpdfn~~yel~-dP~tv 78 (133)
T PF02966_consen 2 LPHLHSGWHVDQAILS--EEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNFAVIYLVDIDEVPDFNQMYELY-DPCTV 78 (133)
T ss_dssp SEEE-SHHHHHHHHHH---SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTTHCCHHHTTS--SSEEE
T ss_pred CcccCccchHHHHHhc--cCceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcceEEEEEEcccchhhhcccccC-CCeEE
Confidence 4667788888888764 3689999999999999999999999999999887 778899999999999999999 67 46
Q ss_pred EEEeCCeEEEEEeC---------C--ChHHHHHHHHHHhhcc
Q 032496 104 FFLKDGQQVDKLVG---------A--NKPELQKKVAAAVDSV 134 (139)
Q Consensus 104 ~~~~~g~~~~~~~g---------~--~~~~l~~~i~~~~~~~ 134 (139)
++|-+++.+....| . +.+++.+.++.+-..+
T Consensus 79 mFF~rnkhm~vD~GtgnnnKin~~~~~kqe~iDiie~iyrga 120 (133)
T PF02966_consen 79 MFFFRNKHMMVDFGTGNNNKINWAFEDKQEFIDIIETIYRGA 120 (133)
T ss_dssp EEEETTEEEEEESSSSSSSSBCS--SCHHHHHHHHHHHHHHH
T ss_pred EEEecCeEEEEEecCCCccEEEEEcCcHHHHHHHHHHHHHHh
Confidence 66667776654433 2 5788888877665443
No 159
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.84 E-value=3.9e-08 Score=75.21 Aligned_cols=77 Identities=21% Similarity=0.294 Sum_probs=66.9
Q ss_pred CEE-EEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhhhhhCCCcceeEEEEEeCCeEEEEEeCC-ChHHHH
Q 032496 47 KIV-IANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGA-NKPELQ 124 (139)
Q Consensus 47 k~v-lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~l~ 124 (139)
+++ +-.|.+++|++|......+++++...+++..-.+|....++++++|+|.++|++++ ||+.+.. |. +.+++.
T Consensus 476 ~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~v~~vP~~~i--~~~~~~~--G~~~~~~~~ 551 (555)
T TIGR03143 476 KPVNIKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDVSHFPDLKDEYGIMSVPAIVV--DDQQVYF--GKKTIEEML 551 (555)
T ss_pred CCeEEEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEECcccHHHHHhCCceecCEEEE--CCEEEEe--eCCCHHHHH
Confidence 454 55567999999999999999999999999999999999999999999999999999 7776543 76 888887
Q ss_pred HHH
Q 032496 125 KKV 127 (139)
Q Consensus 125 ~~i 127 (139)
++|
T Consensus 552 ~~~ 554 (555)
T TIGR03143 552 ELI 554 (555)
T ss_pred Hhh
Confidence 765
No 160
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=98.83 E-value=5.2e-08 Score=62.11 Aligned_cols=41 Identities=24% Similarity=0.564 Sum_probs=33.8
Q ss_pred CCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeC
Q 032496 45 EGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDV 85 (139)
Q Consensus 45 ~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~ 85 (139)
..+++|+.|+.++||+|+.+.+.+.++...++++.++..+.
T Consensus 4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~ 44 (154)
T cd03023 4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKEDPDVRVVFKEF 44 (154)
T ss_pred CCCEEEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEeC
Confidence 46789999999999999999999999888887765554433
No 161
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=98.83 E-value=3.6e-08 Score=54.98 Aligned_cols=67 Identities=22% Similarity=0.344 Sum_probs=48.6
Q ss_pred EEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhhhhh----CCCcceeEEEEEeCCeEEEEEeCCChHHHHH
Q 032496 50 IANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTS----WDIKATPTFFFLKDGQQVDKLVGANKPELQK 125 (139)
Q Consensus 50 lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~----~~v~~~Pt~~~~~~g~~~~~~~g~~~~~l~~ 125 (139)
++.|+++||++|..+...|.+. ++.+..++++.+....+. .++..+|++++ +|+ .+.|.+.++|.+
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~-----~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~--~~~---~i~g~~~~~l~~ 71 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDER-----GIPFEEVDVDEDPEALEELKKLNGYRSVPVVVI--GDE---HLSGFRPDKLRA 71 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHC-----CCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEE--CCE---EEecCCHHHHHh
Confidence 5678999999999998888663 567777888766544333 37889999976 453 455777777765
Q ss_pred H
Q 032496 126 K 126 (139)
Q Consensus 126 ~ 126 (139)
+
T Consensus 72 ~ 72 (73)
T cd02976 72 L 72 (73)
T ss_pred h
Confidence 4
No 162
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=4.3e-09 Score=70.18 Aligned_cols=101 Identities=28% Similarity=0.538 Sum_probs=83.9
Q ss_pred eEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhhhhhCCCcceeEEEE
Q 032496 26 VSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFF 105 (139)
Q Consensus 26 ~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~ 105 (139)
+..+.....| +. .+++.++++||++||..|..+...+..+++..+++.|+.++.++.++++..+.+..+|.+++
T Consensus 3 v~~i~~~~~f---~~---~~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~~~~~~~k~~a~~~~eis~~~~v~~vp~~~~ 76 (227)
T KOG0911|consen 3 VQFIVFQEQF---LD---QKGKLLVLHFWAIWAVVQKQMDQVFDHLAEYFKNAQFLKLEAEEFPEISNLIAVEAVPYFVF 76 (227)
T ss_pred ceeehhHHHH---HH---hccchhhhhhhhhhhhhhhhHHHHHHHHHHhhhhheeeeehhhhhhHHHHHHHHhcCceeee
Confidence 3444455555 22 26889999999999999999999999999999889999999999999999999999999999
Q ss_pred EeCCeEEEEEeCCChHHHHHHHHHHhh
Q 032496 106 LKDGQQVDKLVGANKPELQKKVAAAVD 132 (139)
Q Consensus 106 ~~~g~~~~~~~g~~~~~l~~~i~~~~~ 132 (139)
+..|+.+.+..+.....+...+..+..
T Consensus 77 ~~~~~~v~~l~~~~~~~~~~~~~~~~~ 103 (227)
T KOG0911|consen 77 FFLGEKVDRLSGADPPFLVSKVEKLAE 103 (227)
T ss_pred eecchhhhhhhccCcHHHHHHHHHhhh
Confidence 999999999888865555555554433
No 163
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=98.77 E-value=6.1e-08 Score=52.45 Aligned_cols=56 Identities=25% Similarity=0.464 Sum_probs=44.2
Q ss_pred EEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhh----hhhCCCcceeEEEEEeCCeEE
Q 032496 50 IANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEF----STSWDIKATPTFFFLKDGQQV 112 (139)
Q Consensus 50 lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~----~~~~~v~~~Pt~~~~~~g~~~ 112 (139)
++.|+.+||++|......|++. ++.+..+|++.+++. .+..|..++|++++ +|+.+
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~-----~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i--~g~~I 60 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEK-----GIPYEEVDVDEDEEAREELKELSGVRTVPQVFI--DGKFI 60 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT-----TBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEE--TTEEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHc-----CCeeeEcccccchhHHHHHHHHcCCCccCEEEE--CCEEC
Confidence 4679999999999999988544 688888999877543 33349999999998 77653
No 164
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=98.76 E-value=1.2e-07 Score=65.67 Aligned_cols=82 Identities=15% Similarity=0.331 Sum_probs=58.9
Q ss_pred CCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCC--------------------------------------
Q 032496 45 EGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVD-------------------------------------- 86 (139)
Q Consensus 45 ~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~-------------------------------------- 86 (139)
..+.+|+.|.-+.||+|+++.+.+.++.+. +++.+..+...
T Consensus 116 ~ak~~I~vFtDp~CpyC~kl~~~l~~~~~~-g~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~~~~~~~~ 194 (251)
T PRK11657 116 DAPRIVYVFADPNCPYCKQFWQQARPWVDS-GKVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGGKLGLKPP 194 (251)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHhhc-CceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhhccCCCcc
Confidence 457889999999999999999999887665 34555444320
Q ss_pred ------------cchhhhhhCCCcceeEEEEEe-CCeEEEEEeCC-ChHHHHHHHH
Q 032496 87 ------------ELVEFSTSWDIKATPTFFFLK-DGQQVDKLVGA-NKPELQKKVA 128 (139)
Q Consensus 87 ------------~~~~~~~~~~v~~~Pt~~~~~-~g~~~~~~~g~-~~~~l~~~i~ 128 (139)
++..+..++|+.++|++++-. +| .+....|. +.++|.+.|.
T Consensus 195 ~~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~~G-~~~~v~G~~~~~~L~~~l~ 249 (251)
T PRK11657 195 ASIPAAVRKQLADNQKLMDDLGANATPAIYYMDKDG-TLQQVVGLPDPAQLAEIMG 249 (251)
T ss_pred ccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCC-CEEEecCCCCHHHHHHHhC
Confidence 012356679999999999974 45 33455688 7888887664
No 165
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=98.75 E-value=7.2e-08 Score=64.47 Aligned_cols=76 Identities=22% Similarity=0.362 Sum_probs=54.1
Q ss_pred CCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeC--C------------------------------------
Q 032496 45 EGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDV--D------------------------------------ 86 (139)
Q Consensus 45 ~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~--~------------------------------------ 86 (139)
.+++.++.|+.+.|++|+++.+.+.+ ...++.+..+.. .
T Consensus 76 ~~~~~i~~f~D~~Cp~C~~~~~~l~~---~~~~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~~~~ 152 (197)
T cd03020 76 NGKRVVYVFTDPDCPYCRKLEKELKP---NADGVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPPPAA 152 (197)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHhh---ccCceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCCCcc
Confidence 35799999999999999999999877 223444433322 1
Q ss_pred -------cchhhhhhCCCcceeEEEEEeCCeEEEEEeCC-ChHHHHHHH
Q 032496 87 -------ELVEFSTSWDIKATPTFFFLKDGQQVDKLVGA-NKPELQKKV 127 (139)
Q Consensus 87 -------~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~i 127 (139)
++..+++.+||.++|+++ +.+|+. ..|. +.++|.++|
T Consensus 153 ~~~~~i~~~~~l~~~~gi~gtPtii-~~~G~~---~~G~~~~~~l~~~L 197 (197)
T cd03020 153 SCDNPVAANLALGRQLGVNGTPTIV-LADGRV---VPGAPPAAQLEALL 197 (197)
T ss_pred ccCchHHHHHHHHHHcCCCcccEEE-ECCCeE---ecCCCCHHHHHhhC
Confidence 123467789999999998 777875 4577 777776653
No 166
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=98.71 E-value=1.1e-07 Score=53.34 Aligned_cols=66 Identities=21% Similarity=0.340 Sum_probs=50.2
Q ss_pred EEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhhhhhC---CCcceeEEEEEeCCeEEEEEeCCChHHHHH
Q 032496 51 ANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSW---DIKATPTFFFLKDGQQVDKLVGANKPELQK 125 (139)
Q Consensus 51 v~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~---~v~~~Pt~~~~~~g~~~~~~~g~~~~~l~~ 125 (139)
..|..++|++|+.....|.+. ++.|-.+|+++++.....+ |...+|++++ +|. ..+.|++++.|.+
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~~~-----~i~~~~~di~~~~~~~~~~~~~g~~~vP~v~~--~g~--~~~~G~~~~~~~~ 70 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALEEH-----GIAFEEINIDEQPEAIDYVKAQGFRQVPVIVA--DGD--LSWSGFRPDKLKA 70 (72)
T ss_pred EEEeCCCCHHHHHHHHHHHHC-----CCceEEEECCCCHHHHHHHHHcCCcccCEEEE--CCC--cEEeccCHHHHHh
Confidence 467899999999999999753 7888888988777554444 8889999876 443 2455778887765
No 167
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=98.71 E-value=1.8e-07 Score=53.46 Aligned_cols=59 Identities=14% Similarity=0.219 Sum_probs=44.7
Q ss_pred CEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcc---hhhhhhCCCcceeEEEEEeCCeEE
Q 032496 47 KIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDEL---VEFSTSWDIKATPTFFFLKDGQQV 112 (139)
Q Consensus 47 k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~---~~~~~~~~v~~~Pt~~~~~~g~~~ 112 (139)
+.-|+.|+.+||++|++....|.+. ++.|..+|++++ ..+.+..|...+|.+++ +|+.+
T Consensus 7 ~~~V~ly~~~~Cp~C~~ak~~L~~~-----gi~y~~idi~~~~~~~~~~~~~g~~~vP~i~i--~g~~i 68 (79)
T TIGR02190 7 PESVVVFTKPGCPFCAKAKATLKEK-----GYDFEEIPLGNDARGRSLRAVTGATTVPQVFI--GGKLI 68 (79)
T ss_pred CCCEEEEECCCCHhHHHHHHHHHHc-----CCCcEEEECCCChHHHHHHHHHCCCCcCeEEE--CCEEE
Confidence 3346779999999999999999754 677777888765 34555578899999976 77653
No 168
>PRK10329 glutaredoxin-like protein; Provisional
Probab=98.67 E-value=6.6e-07 Score=51.43 Aligned_cols=73 Identities=14% Similarity=0.224 Sum_probs=55.9
Q ss_pred EEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhhh---hhCCCcceeEEEEEeCCeEEEEEeCCChHHHHHH
Q 032496 50 IANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFS---TSWDIKATPTFFFLKDGQQVDKLVGANKPELQKK 126 (139)
Q Consensus 50 lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~---~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~l~~~ 126 (139)
+..|..+||++|..++..|.+. ++.|-.+|++++++.. ...|...+|++++ ++. .+.|+..++|.++
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~~-----gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~i--~~~---~~~Gf~~~~l~~~ 72 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMESR-----GFDFEMINVDRVPEAAETLRAQGFRQLPVVIA--GDL---SWSGFRPDMINRL 72 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHHC-----CCceEEEECCCCHHHHHHHHHcCCCCcCEEEE--CCE---EEecCCHHHHHHH
Confidence 5678899999999999988553 7888899998776532 3357789999976 443 4558899999988
Q ss_pred HHHHhh
Q 032496 127 VAAAVD 132 (139)
Q Consensus 127 i~~~~~ 132 (139)
+.....
T Consensus 73 ~~~~~~ 78 (81)
T PRK10329 73 HPAPHA 78 (81)
T ss_pred HHhhhh
Confidence 876543
No 169
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.66 E-value=2.9e-07 Score=69.91 Aligned_cols=80 Identities=18% Similarity=0.343 Sum_probs=68.0
Q ss_pred CCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhhhhhCCCcceeEEEEEeCCeEEEEEeCC-ChHHHH
Q 032496 46 GKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGA-NKPELQ 124 (139)
Q Consensus 46 ~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~l~ 124 (139)
++.-+..|.+++|++|..+...+++++...+++.+-.+|....++++++|++.++|++++ ||+.. +.|. +.++|.
T Consensus 116 ~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~i~~~~id~~~~~~~~~~~~v~~VP~~~i--~~~~~--~~g~~~~~~~~ 191 (517)
T PRK15317 116 GDFHFETYVSLSCHNCPDVVQALNLMAVLNPNITHTMIDGALFQDEVEARNIMAVPTVFL--NGEEF--GQGRMTLEEIL 191 (517)
T ss_pred CCeEEEEEEcCCCCCcHHHHHHHHHHHHhCCCceEEEEEchhCHhHHHhcCCcccCEEEE--CCcEE--EecCCCHHHHH
Confidence 445588899999999999999999999999999999999999999999999999999987 66543 4466 777777
Q ss_pred HHHHH
Q 032496 125 KKVAA 129 (139)
Q Consensus 125 ~~i~~ 129 (139)
+.+.+
T Consensus 192 ~~~~~ 196 (517)
T PRK15317 192 AKLDT 196 (517)
T ss_pred HHHhc
Confidence 76654
No 170
>PHA03050 glutaredoxin; Provisional
Probab=98.60 E-value=3.2e-07 Score=55.57 Aligned_cols=60 Identities=22% Similarity=0.323 Sum_probs=42.4
Q ss_pred EEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCc---c----hhhhhhCCCcceeEEEEEeCCeEEE
Q 032496 50 IANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDE---L----VEFSTSWDIKATPTFFFLKDGQQVD 113 (139)
Q Consensus 50 lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~---~----~~~~~~~~v~~~Pt~~~~~~g~~~~ 113 (139)
|+.|..+|||+|.+....|.+..-..+.+. .+|+++ . .++.+..|...+|++++ +|+.+.
T Consensus 15 V~vys~~~CPyC~~ak~~L~~~~i~~~~~~--~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI--~g~~iG 81 (108)
T PHA03050 15 VTIFVKFTCPFCRNALDILNKFSFKRGAYE--IVDIKEFKPENELRDYFEQITGGRTVPRIFF--GKTSIG 81 (108)
T ss_pred EEEEECCCChHHHHHHHHHHHcCCCcCCcE--EEECCCCCCCHHHHHHHHHHcCCCCcCEEEE--CCEEEe
Confidence 567999999999999999988744333344 445543 2 34555668889999977 776543
No 171
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=98.59 E-value=4.9e-07 Score=60.94 Aligned_cols=39 Identities=15% Similarity=0.406 Sum_probs=31.4
Q ss_pred CCEEEEEEeCCCChhhhhhhHhH---HHHHHhCC-CcEEEEEe
Q 032496 46 GKIVIANFSATWCGPCRMIAPFF---SELSEKYP-SLMFLLVD 84 (139)
Q Consensus 46 ~k~vlv~f~~~~C~~C~~~~~~l---~~~~~~~~-~v~~~~vd 84 (139)
+++.|+.|+...||+|..+.+.+ +.+.+.++ ++.++.+.
T Consensus 37 ~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~~v~~~~~~ 79 (207)
T PRK10954 37 GEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPEGTKMTKYH 79 (207)
T ss_pred CCCeEEEEeCCCCccHHHhcccccchHHHHHhCCCCCeEEEec
Confidence 56779999999999999999876 78888887 45655443
No 172
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=98.58 E-value=5.7e-07 Score=58.83 Aligned_cols=37 Identities=24% Similarity=0.462 Sum_probs=31.6
Q ss_pred CCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCC-cEEE
Q 032496 45 EGKIVIANFSATWCGPCRMIAPFFSELSEKYPS-LMFL 81 (139)
Q Consensus 45 ~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~-v~~~ 81 (139)
.+++.|+.|+...||+|+.+.+.+..+.+++++ +.|.
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~v~~~ 51 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPKDVKFE 51 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCCCceEE
Confidence 468899999999999999999999999888863 4443
No 173
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=98.58 E-value=1.3e-07 Score=56.37 Aligned_cols=57 Identities=21% Similarity=0.339 Sum_probs=40.2
Q ss_pred EEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchh-------hhhhCCCcceeEEEEEeCCeEEE
Q 032496 50 IANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVE-------FSTSWDIKATPTFFFLKDGQQVD 113 (139)
Q Consensus 50 lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~-------~~~~~~v~~~Pt~~~~~~g~~~~ 113 (139)
++.|..+|||+|.++...|.+. ++.+..+|++.++. +.+..|...+|.+++ +|+.+.
T Consensus 10 Vvvysk~~Cp~C~~ak~~L~~~-----~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vfi--~g~~iG 73 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKRLLLTL-----GVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVFV--GGKLVG 73 (99)
T ss_pred EEEEECCCCHHHHHHHHHHHHc-----CCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEEE--CCEEEc
Confidence 5569999999999999988765 45555666665432 333446789999865 775443
No 174
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=98.56 E-value=7.7e-07 Score=50.95 Aligned_cols=58 Identities=19% Similarity=0.359 Sum_probs=43.1
Q ss_pred EEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcch-----hhhhhCCCcceeEEEEEeCCeEE
Q 032496 50 IANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELV-----EFSTSWDIKATPTFFFLKDGQQV 112 (139)
Q Consensus 50 lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~-----~~~~~~~v~~~Pt~~~~~~g~~~ 112 (139)
++.|+++|||+|..+...|.++.. .+.++.++.+.+. .+.+.+|..++|++++ +|+.+
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v~~--~g~~i 64 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGV---KPAVVELDQHEDGSEIQDYLQELTGQRTVPNVFI--GGKFI 64 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCC---CcEEEEEeCCCChHHHHHHHHHHhCCCCCCeEEE--CCEEE
Confidence 467899999999999999988744 3566677766542 3455678899999754 67653
No 175
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=98.55 E-value=1.3e-06 Score=48.94 Aligned_cols=66 Identities=15% Similarity=0.316 Sum_probs=46.8
Q ss_pred EEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchh---hhhhCCCcceeEEEEEeCCeEEEEEeCCChHHHHHH
Q 032496 50 IANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVE---FSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKK 126 (139)
Q Consensus 50 lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~---~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~l~~~ 126 (139)
++.|..+||++|.+.+..|.+. ++.+..+|++.+.. +....|...+|.+++ +|+.+. ..++|.++
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~~-----~i~~~~~~v~~~~~~~~~~~~~g~~~vP~ifi--~g~~ig-----g~~~l~~~ 70 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQEN-----GISYEEIPLGKDITGRSLRAVTGAMTVPQVFI--DGELIG-----GSDDLEKY 70 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc-----CCCcEEEECCCChhHHHHHHHhCCCCcCeEEE--CCEEEe-----CHHHHHHH
Confidence 5678999999999999888753 67777777776543 334468899999865 676442 34556555
Q ss_pred H
Q 032496 127 V 127 (139)
Q Consensus 127 i 127 (139)
|
T Consensus 71 l 71 (72)
T cd03029 71 F 71 (72)
T ss_pred h
Confidence 4
No 176
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=98.54 E-value=1.2e-06 Score=56.33 Aligned_cols=80 Identities=28% Similarity=0.501 Sum_probs=60.6
Q ss_pred CCCEEEEEEeCCCChhhhhhhHhHHHHHHhC--C-CcEEEEEeCCc----------------------------------
Q 032496 45 EGKIVIANFSATWCGPCRMIAPFFSELSEKY--P-SLMFLLVDVDE---------------------------------- 87 (139)
Q Consensus 45 ~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~--~-~v~~~~vd~~~---------------------------------- 87 (139)
..+++|+.|+...|++|..+.+.+.++.+++ + .+.|+..+...
T Consensus 11 ~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (162)
T PF13462_consen 11 DAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPVPLDKHSSLRAAMAAECVADQGKYFWFFHELLFSQQE 90 (162)
T ss_dssp TTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEESSSSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHCH
T ss_pred CCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEccccchhHHHHHHHHHHHHHHhHHHHHHHHHHHHhhh
Confidence 4688999999999999999999999998887 4 47777776620
Q ss_pred ----------------------------------chhhhhhCCCcceeEEEEEeCCeEEEEEeCC-ChHHHHHHHHH
Q 032496 88 ----------------------------------LVEFSTSWDIKATPTFFFLKDGQQVDKLVGA-NKPELQKKVAA 129 (139)
Q Consensus 88 ----------------------------------~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~i~~ 129 (139)
......++||.++||+++ ||+.+ .+. +.++|.+.|++
T Consensus 91 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~tPt~~i--nG~~~---~~~~~~~~l~~~Id~ 162 (162)
T PF13462_consen 91 NFENKKDIAANAGGSNEQFNKCLNSDEIKAQLEADSQLARQLGITGTPTFFI--NGKYV---VGPYTIEELKELIDK 162 (162)
T ss_dssp STSSHHHHHHHTTSHHHHHHHHHTSHHHHHHHHHHHHHHHHHT-SSSSEEEE--TTCEE---ETTTSHHHHHHHHHH
T ss_pred ccchhHHHHHHcCCCHHHHHHHhhchHHHHHHHHHHHHHHHcCCccccEEEE--CCEEe---CCCCCHHHHHHHHcC
Confidence 001244578999999999 99874 455 89999988874
No 177
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=98.53 E-value=1.6e-06 Score=49.76 Aligned_cols=77 Identities=14% Similarity=0.268 Sum_probs=57.9
Q ss_pred EEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhhhhhCCCcceeEEEEEeCC--eEEEEEeCC-ChHHHHHH
Q 032496 50 IANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDG--QQVDKLVGA-NKPELQKK 126 (139)
Q Consensus 50 lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g--~~~~~~~g~-~~~~l~~~ 126 (139)
|++|..+.|+-|..+...|..+.... .+.+..+|+++++++..+|+. .+|.+.+...+ .......+. +.+.|.++
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~~-~~~l~~vDI~~d~~l~~~Y~~-~IPVl~~~~~~~~~~~~~~~~~~d~~~L~~~ 79 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAEF-PFELEEVDIDEDPELFEKYGY-RIPVLHIDGIRQFKEQEELKWRFDEEQLRAW 79 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTTS-TCEEEEEETTTTHHHHHHSCT-STSEEEETT-GGGCTSEEEESSB-HHHHHHH
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhhc-CceEEEEECCCCHHHHHHhcC-CCCEEEEcCcccccccceeCCCCCHHHHHHH
Confidence 67899999999999999999876665 489999999999999999996 79998774310 001222355 88999888
Q ss_pred HH
Q 032496 127 VA 128 (139)
Q Consensus 127 i~ 128 (139)
|+
T Consensus 80 L~ 81 (81)
T PF05768_consen 80 LE 81 (81)
T ss_dssp HH
T ss_pred hC
Confidence 74
No 178
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.50 E-value=1.6e-06 Score=65.94 Aligned_cols=81 Identities=16% Similarity=0.375 Sum_probs=67.9
Q ss_pred CCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhhhhhCCCcceeEEEEEeCCeEEEEEeCC-ChHHHH
Q 032496 46 GKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGA-NKPELQ 124 (139)
Q Consensus 46 ~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~l~ 124 (139)
++.-+..|.++.|++|......+++++...|++..-.+|....+++.++|++.++|++++ ||+.. +.|. +.+++.
T Consensus 117 ~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~i~~~~id~~~~~~~~~~~~v~~VP~~~i--~~~~~--~~g~~~~~~~~ 192 (515)
T TIGR03140 117 GPLHFETYVSLTCQNCPDVVQALNQMALLNPNISHTMIDGALFQDEVEALGIQGVPAVFL--NGEEF--HNGRMDLAELL 192 (515)
T ss_pred CCeEEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEchhCHHHHHhcCCcccCEEEE--CCcEE--EecCCCHHHHH
Confidence 445588899999999999999999999999999999999999999999999999999988 66544 3466 777776
Q ss_pred HHHHHH
Q 032496 125 KKVAAA 130 (139)
Q Consensus 125 ~~i~~~ 130 (139)
+.+.+.
T Consensus 193 ~~l~~~ 198 (515)
T TIGR03140 193 EKLEET 198 (515)
T ss_pred HHHhhc
Confidence 665543
No 179
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.50 E-value=3.9e-08 Score=66.05 Aligned_cols=92 Identities=22% Similarity=0.417 Sum_probs=73.3
Q ss_pred echhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCC--CcEEEEEeCCcchhhhhhCCCcceeEEEEEe
Q 032496 30 TTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP--SLMFLLVDVDELVEFSTSWDIKATPTFFFLK 107 (139)
Q Consensus 30 ~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~ 107 (139)
.+.++....+ ..--++.|+++||+.|....++++.++.--. +|.+..+|...++.+.-+|-+...||++-.+
T Consensus 29 ~~eenw~~~l------~gewmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~npgLsGRF~vtaLptIYHvk 102 (248)
T KOG0913|consen 29 IDEENWKELL------TGEWMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTNPGLSGRFLVTALPTIYHVK 102 (248)
T ss_pred ecccchhhhh------chHHHHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEeccccceeeEEEecceEEEee
Confidence 3455554444 2345788999999999999999988765443 4999999999999999999999999999999
Q ss_pred CCeEEEEEeCC-ChHHHHHHHH
Q 032496 108 DGQQVDKLVGA-NKPELQKKVA 128 (139)
Q Consensus 108 ~g~~~~~~~g~-~~~~l~~~i~ 128 (139)
+|.... +.|. +..++..++.
T Consensus 103 DGeFrr-ysgaRdk~dfisf~~ 123 (248)
T KOG0913|consen 103 DGEFRR-YSGARDKNDFISFEE 123 (248)
T ss_pred cccccc-ccCcccchhHHHHHH
Confidence 997654 4466 8888877664
No 180
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=98.45 E-value=8.1e-07 Score=59.11 Aligned_cols=93 Identities=15% Similarity=0.297 Sum_probs=77.6
Q ss_pred CceEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhhhhhCCCcceeEE
Q 032496 24 GNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTF 103 (139)
Q Consensus 24 ~~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~ 103 (139)
+.|.++.+..+|-..+... .+.-.++|+.|-+.-+.|..+...+.-++..||-++|+.+-.. +....++|....+|++
T Consensus 138 ~~V~El~~gkqfld~idke-~ks~~i~VhIYEdgi~gcealn~~~~cLAAeyP~vKFckikss-~~gas~~F~~n~lP~L 215 (273)
T KOG3171|consen 138 GFVYELETGKQFLDTIDKE-LKSTTIVVHIYEDGIKGCEALNSSLTCLAAEYPIVKFCKIKSS-NTGASDRFSLNVLPTL 215 (273)
T ss_pred ceEEEeccchhHHHHHhcc-cceEEEEEEEecCCCchHHHHhhhHHHhhccCCceeEEEeeec-cccchhhhcccCCceE
Confidence 4688889999998888644 2345788999999999999999999999999999999998654 3455788999999999
Q ss_pred EEEeCCeEEEEEeCC
Q 032496 104 FFLKDGQQVDKLVGA 118 (139)
Q Consensus 104 ~~~~~g~~~~~~~g~ 118 (139)
++|++|..+..++..
T Consensus 216 liYkgGeLIgNFv~v 230 (273)
T KOG3171|consen 216 LIYKGGELIGNFVSV 230 (273)
T ss_pred EEeeCCchhHHHHHH
Confidence 999999988876543
No 181
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=98.44 E-value=1.5e-05 Score=52.34 Aligned_cols=95 Identities=15% Similarity=0.271 Sum_probs=72.4
Q ss_pred chhHHHHHHHHHhhCCCE-EEEEEeCCCChhhhhhhHhHHHHHHhCCC-cEEEEEeCCcchhhhhhCCCc--ceeEEEEE
Q 032496 31 TKDIWDQKMSEASKEGKI-VIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVDELVEFSTSWDIK--ATPTFFFL 106 (139)
Q Consensus 31 ~~~~~~~~~~~~~~~~k~-vlv~f~~~~C~~C~~~~~~l~~~~~~~~~-v~~~~vd~~~~~~~~~~~~v~--~~Pt~~~~ 106 (139)
+.+++.... ..+++ +++.|..........+...+.++++++.+ +.|+.+|++..+.+.+.||+. .+|+++++
T Consensus 83 t~~n~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~f~~~d~~~~~~~~~~~~i~~~~~P~~vi~ 158 (184)
T PF13848_consen 83 TPENFEKLF----SSPKPPVLILFDNKDNESTEAFKKELQDIAKKFKGKINFVYVDADDFPRLLKYFGIDEDDLPALVIF 158 (184)
T ss_dssp STTHHHHHH----STSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTTSEEEEEETTTTHHHHHHTTTTTSSSSEEEEE
T ss_pred chhhHHHHh----cCCCceEEEEEEcCCchhHHHHHHHHHHHHHhcCCeEEEEEeehHHhHHHHHHcCCCCccCCEEEEE
Confidence 344554444 34445 77777777788889999999999999986 999999999888899999998 99999988
Q ss_pred e--CCeEEEEEeCC-ChHHHHHHHHH
Q 032496 107 K--DGQQVDKLVGA-NKPELQKKVAA 129 (139)
Q Consensus 107 ~--~g~~~~~~~g~-~~~~l~~~i~~ 129 (139)
. +++......+. +.+.|.+|++.
T Consensus 159 ~~~~~~~~~~~~~~~~~~~i~~Fl~d 184 (184)
T PF13848_consen 159 DSNKGKYYYLPEGEITPESIEKFLND 184 (184)
T ss_dssp ETTTSEEEE--SSCGCHHHHHHHHHH
T ss_pred ECCCCcEEcCCCCCCCHHHHHHHhcC
Confidence 5 44433333555 88999988863
No 182
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.43 E-value=5.4e-06 Score=63.62 Aligned_cols=107 Identities=21% Similarity=0.152 Sum_probs=85.0
Q ss_pred chhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhhhhhCCCcceeEEEEE-eCC
Q 032496 31 TKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFL-KDG 109 (139)
Q Consensus 31 ~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~-~~g 109 (139)
..+++...+. ...+++.++.|+.+.|..|..+...+++++...+.+.+...|..++..++++|++...|++.++ .+|
T Consensus 353 ~~~~l~~~~~--~l~~~v~l~~~~~~~~~~~~e~~~~l~e~~~~s~~i~~~~~~~~~~~~~~~~~~v~~~P~~~i~~~~~ 430 (555)
T TIGR03143 353 LRQQLVGIFG--RLENPVTLLLFLDGSNEKSAELQSFLGEFASLSEKLNSEAVNRGEEPESETLPKITKLPTVALLDDDG 430 (555)
T ss_pred HHHHHHHHHH--hcCCCEEEEEEECCCchhhHHHHHHHHHHHhcCCcEEEEEeccccchhhHhhcCCCcCCEEEEEeCCC
Confidence 3444444443 2456667888889999999999999999998777788888999999999999999999999998 465
Q ss_pred eE-EEEEeCC-ChHHHHHHHHHHhhccCCCCC
Q 032496 110 QQ-VDKLVGA-NKPELQKKVAAAVDSVVPSQK 139 (139)
Q Consensus 110 ~~-~~~~~g~-~~~~l~~~i~~~~~~~~~~~k 139 (139)
.. --+|.|. ...+|..+|..++....+.++
T Consensus 431 ~~~~i~f~g~P~G~Ef~s~i~~i~~~~~~~~~ 462 (555)
T TIGR03143 431 NYTGLKFHGVPSGHELNSFILALYNAAGPGQP 462 (555)
T ss_pred cccceEEEecCccHhHHHHHHHHHHhcCCCCC
Confidence 43 2567788 889999999999887766543
No 183
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=98.42 E-value=1.8e-06 Score=56.96 Aligned_cols=102 Identities=16% Similarity=0.357 Sum_probs=81.1
Q ss_pred CceEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhhhhhCCCcceeEE
Q 032496 24 GNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTF 103 (139)
Q Consensus 24 ~~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~ 103 (139)
+.|.+| +..+|.+.++.+ .++-.|||+.|...-+.|.-....|..++.+||.++|+.+-...+- ..|.-...||+
T Consensus 91 G~V~~I-Sg~dyv~EVT~A-s~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~iKFVki~at~cI---pNYPe~nlPTl 165 (240)
T KOG3170|consen 91 GEVFPI-SGPDYVKEVTKA-SEGVWVVVHLYKQGVPLCALLSHHLQSLACKFPQIKFVKIPATTCI---PNYPESNLPTL 165 (240)
T ss_pred cceeec-cchHHHHHHHhc-cCccEEEEEeeccccHHHHHHHHHHHHHhhcCCcceEEeccccccc---CCCcccCCCeE
Confidence 456676 455677778777 4577999999999999999999999999999999999998765543 46777889999
Q ss_pred EEEeCCeEEEEEeCC--------ChHHHHHHHHHH
Q 032496 104 FFLKDGQQVDKLVGA--------NKPELQKKVAAA 130 (139)
Q Consensus 104 ~~~~~g~~~~~~~g~--------~~~~l~~~i~~~ 130 (139)
++|..|.+...+.|. +.+++..++-+.
T Consensus 166 ~VY~~G~lk~q~igll~lgG~n~t~ed~e~~L~qa 200 (240)
T KOG3170|consen 166 LVYHHGALKKQMIGLLELGGMNLTMEDVEDFLVQA 200 (240)
T ss_pred EEeecchHHhheehhhhhcCCcCCHHHHHHHHHhc
Confidence 999988877665542 567777766554
No 184
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=98.41 E-value=2.5e-06 Score=47.15 Aligned_cols=57 Identities=21% Similarity=0.384 Sum_probs=42.8
Q ss_pred EEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhh----hhhCCCcceeEEEEEeCCeEEE
Q 032496 50 IANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEF----STSWDIKATPTFFFLKDGQQVD 113 (139)
Q Consensus 50 lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~----~~~~~v~~~Pt~~~~~~g~~~~ 113 (139)
++.|+++||++|+.+...|.+. ++.+..+|++.+.+. .+..+...+|++++ +|+.+.
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~-----~i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~~--~~~~ig 62 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESL-----GIEFEEIDILEDGELREELKELSGWPTVPQIFI--NGEFIG 62 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc-----CCcEEEEECCCCHHHHHHHHHHhCCCCcCEEEE--CCEEEe
Confidence 4678899999999999998876 377778888776543 33456778898755 776554
No 185
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=98.40 E-value=2.3e-06 Score=48.03 Aligned_cols=57 Identities=21% Similarity=0.457 Sum_probs=44.1
Q ss_pred EEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchh----hhhhCCCcceeEEEEEeCCeEEE
Q 032496 50 IANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVE----FSTSWDIKATPTFFFLKDGQQVD 113 (139)
Q Consensus 50 lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~----~~~~~~v~~~Pt~~~~~~g~~~~ 113 (139)
++.|+.++|++|+++...|++. ++.+..+|+++++. +.+..+-..+|++++ +|+.+.
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~~-----gi~~~~~di~~~~~~~~el~~~~g~~~vP~v~i--~~~~iG 63 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLREK-----GLPYVEINIDIFPERKAELEERTGSSVVPQIFF--NEKLVG 63 (73)
T ss_pred EEEEecCCChhHHHHHHHHHHC-----CCceEEEECCCCHHHHHHHHHHhCCCCcCEEEE--CCEEEe
Confidence 4568899999999999998864 67788888887654 455557788999977 776544
No 186
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=98.40 E-value=1.2e-06 Score=49.99 Aligned_cols=56 Identities=16% Similarity=0.346 Sum_probs=41.2
Q ss_pred EEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhh----hhhCCCcceeEEEEEeCCeEE
Q 032496 50 IANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEF----STSWDIKATPTFFFLKDGQQV 112 (139)
Q Consensus 50 lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~----~~~~~v~~~Pt~~~~~~g~~~ 112 (139)
|..|+.+||++|......|++. ++.+-.+|++.++.. .+..|...+|++++ +|+.+
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~-----~i~~~~~di~~~~~~~~~~~~~~g~~~vP~i~i--~g~~i 60 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSK-----GVTFTEIRVDGDPALRDEMMQRSGRRTVPQIFI--GDVHV 60 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHc-----CCCcEEEEecCCHHHHHHHHHHhCCCCcCEEEE--CCEEE
Confidence 3568899999999999999764 566667777766543 34457889999866 67544
No 187
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=98.39 E-value=2.4e-06 Score=48.03 Aligned_cols=56 Identities=13% Similarity=0.263 Sum_probs=41.8
Q ss_pred EEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhh----hhhCCCc-ceeEEEEEeCCeEE
Q 032496 50 IANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEF----STSWDIK-ATPTFFFLKDGQQV 112 (139)
Q Consensus 50 lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~----~~~~~v~-~~Pt~~~~~~g~~~ 112 (139)
++.|+.++|++|..+...|++. ++.|..+|++.+++. .+.++.. ++|++++ +|+.+
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~-----~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~i--~g~~i 62 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKK-----GVDYEEIDVDGDPALREEMINRSGGRRTVPQIFI--GDVHI 62 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHC-----CCcEEEEECCCCHHHHHHHHHHhCCCCccCEEEE--CCEEE
Confidence 4678899999999999988764 677778888776443 3345666 8998876 77654
No 188
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=98.34 E-value=8e-06 Score=49.13 Aligned_cols=85 Identities=16% Similarity=0.249 Sum_probs=62.5
Q ss_pred hhHHHHHHHHHhhCCCEEEEEEeCCCC---hhhhhhhHhHHHHHHhCCC-cEEEEEeCCcchhhhhhCCCcceeEEEEEe
Q 032496 32 KDIWDQKMSEASKEGKIVIANFSATWC---GPCRMIAPFFSELSEKYPS-LMFLLVDVDELVEFSTSWDIKATPTFFFLK 107 (139)
Q Consensus 32 ~~~~~~~~~~~~~~~k~vlv~f~~~~C---~~C~~~~~~l~~~~~~~~~-v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~ 107 (139)
.++++..+. .....++ |++..| +.+....-.+.++.+.+++ +....++......+..+||+..+|++++++
T Consensus 16 ~~~ld~~l~----~~~~~vl-f~~gDp~r~~E~~DvaVILPEL~~af~~~~~~avv~~~~e~~L~~r~gv~~~PaLvf~R 90 (107)
T PF07449_consen 16 ADTLDAFLA----APGDAVL-FFAGDPARFPETADVAVILPELVKAFPGRFRGAVVARAAERALAARFGVRRWPALVFFR 90 (107)
T ss_dssp CCCHHHHHH----CCSCEEE-EESS-TTTSTTCCHHHHHHHHHHCTSTTSEEEEEEEHHHHHHHHHHHT-TSSSEEEEEE
T ss_pred hhhHHHHHh----CCCcEEE-EECCCCCcCcccccceeEcHHHHHhhhCccceEEECchhHHHHHHHhCCccCCeEEEEE
Confidence 455555553 3444444 555545 4555566688999999987 667777877888999999999999999999
Q ss_pred CCeEEEEEeCC-ChH
Q 032496 108 DGQQVDKLVGA-NKP 121 (139)
Q Consensus 108 ~g~~~~~~~g~-~~~ 121 (139)
+|+.+....|. +..
T Consensus 91 ~g~~lG~i~gi~dW~ 105 (107)
T PF07449_consen 91 DGRYLGAIEGIRDWA 105 (107)
T ss_dssp TTEEEEEEESSSTHH
T ss_pred CCEEEEEecCeeccc
Confidence 99999999887 544
No 189
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=98.33 E-value=3.6e-06 Score=54.24 Aligned_cols=80 Identities=16% Similarity=0.243 Sum_probs=54.6
Q ss_pred HHHHh-hCCCEEEEEEe-CCCChhhhhh-hHhHHHHHHhCC--Cc-EEEEEeCCc-----------------------ch
Q 032496 39 MSEAS-KEGKIVIANFS-ATWCGPCRMI-APFFSELSEKYP--SL-MFLLVDVDE-----------------------LV 89 (139)
Q Consensus 39 ~~~~~-~~~k~vlv~f~-~~~C~~C~~~-~~~l~~~~~~~~--~v-~~~~vd~~~-----------------------~~ 89 (139)
+.+.. ..++++||+|| +.||+.|... .+.|.+.++++. ++ .++.+..|. +.
T Consensus 21 v~L~~~~~gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D~~~~~~~~~~~~~~~~~f~lLsD~~~ 100 (155)
T cd03013 21 VNLSELFKGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVNDPFVMKAWGKALGAKDKIRFLADGNG 100 (155)
T ss_pred eeHHHHhCCCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECCCHHHHHHHHHhhCCCCcEEEEECCCH
Confidence 44444 35677777777 8999999998 999988888875 56 577777753 23
Q ss_pred hhhhhCCCc------c-----eeEEEEEeCCeEEEEEeCC
Q 032496 90 EFSTSWDIK------A-----TPTFFFLKDGQQVDKLVGA 118 (139)
Q Consensus 90 ~~~~~~~v~------~-----~Pt~~~~~~g~~~~~~~g~ 118 (139)
.+++.||+. + ...++++.+|++++.+...
T Consensus 101 ~~~~~ygv~~~~~~~~~~~~~~R~~fiId~g~I~~~~~~~ 140 (155)
T cd03013 101 EFTKALGLTLDLSAAGGGIRSKRYALIVDDGKVKYLFVEE 140 (155)
T ss_pred HHHHHcCCCccccccCCcceeeeEEEEECCCEEEEEEEec
Confidence 456777762 1 2344455578888876554
No 190
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=98.25 E-value=6.9e-06 Score=47.06 Aligned_cols=54 Identities=17% Similarity=0.378 Sum_probs=40.2
Q ss_pred EEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcch-----hhhhhC-CCcceeEEEEEeCCe
Q 032496 50 IANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELV-----EFSTSW-DIKATPTFFFLKDGQ 110 (139)
Q Consensus 50 lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~-----~~~~~~-~v~~~Pt~~~~~~g~ 110 (139)
++.|..++||+|.+....|.+. ++.|..++.+.+. +..++- |.+.+|++++ +|+
T Consensus 3 v~iyt~~~CPyC~~ak~~L~~~-----g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i--~~~ 62 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLDRK-----GVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFI--GGK 62 (80)
T ss_pred EEEEECCCCchHHHHHHHHHHc-----CCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEE--CCE
Confidence 5668899999999999988744 6666676666544 333444 7899999988 665
No 191
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=98.23 E-value=4.3e-05 Score=54.56 Aligned_cols=109 Identities=12% Similarity=0.243 Sum_probs=73.0
Q ss_pred ccCCCceEEeechhHHHHHHHHHhhCCCEEEEEEeCCCCh--hhhhhh---HhHHHHHHhC---CCcEEEEEeCCcchhh
Q 032496 20 EFAGGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCG--PCRMIA---PFFSELSEKY---PSLMFLLVDVDELVEF 91 (139)
Q Consensus 20 ~~~~~~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~--~C~~~~---~~l~~~~~~~---~~v~~~~vd~~~~~~~ 91 (139)
...|..-..-.+.++|.+.+ ++-+.++|+|+.+--. ..++.. ..+-+++.+. .++.|..||..++..+
T Consensus 29 ~YDGkDRVi~LneKNfk~~l----Kkyd~l~l~yh~p~~~dk~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~Kd~kl 104 (383)
T PF01216_consen 29 EYDGKDRVIDLNEKNFKRAL----KKYDVLVLYYHEPVESDKVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSKKDAKL 104 (383)
T ss_dssp S-SSS--CEEE-TTTHHHHH----HH-SEEEEEEE--STSSHHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETTTTHHH
T ss_pred cCCCccceEEcchhHHHHHH----HhhcEEEEEEecCCccCHHHHHHHHHHHHHHHHHHHhccccCcceEEeccHHHHHH
Confidence 44454433344777888877 4557888999977543 222222 3233333332 3699999999999999
Q ss_pred hhhCCCcceeEEEEEeCCeEEEEEeCC-ChHHHHHHHHHHhhc
Q 032496 92 STSWDIKATPTFFFLKDGQQVDKLVGA-NKPELQKKVAAAVDS 133 (139)
Q Consensus 92 ~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~i~~~~~~ 133 (139)
++++|+...+++.+|++|+++... |. +++.|..||..++..
T Consensus 105 AKKLgv~E~~SiyVfkd~~~IEyd-G~~saDtLVeFl~dl~ed 146 (383)
T PF01216_consen 105 AKKLGVEEEGSIYVFKDGEVIEYD-GERSADTLVEFLLDLLED 146 (383)
T ss_dssp HHHHT--STTEEEEEETTEEEEE--S--SHHHHHHHHHHHHSS
T ss_pred HHhcCccccCcEEEEECCcEEEec-CccCHHHHHHHHHHhccc
Confidence 999999999999999999998876 76 999999999998763
No 192
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=98.23 E-value=1.8e-05 Score=47.00 Aligned_cols=61 Identities=18% Similarity=0.237 Sum_probs=42.7
Q ss_pred CCEEEEEEe----CCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhh----hhhCCCcceeEEEEEeCCeEEE
Q 032496 46 GKIVIANFS----ATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEF----STSWDIKATPTFFFLKDGQQVD 113 (139)
Q Consensus 46 ~k~vlv~f~----~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~----~~~~~v~~~Pt~~~~~~g~~~~ 113 (139)
+.+|+|+-. .+|||+|.+....|.+. ++.|..+|+++++++ .+..|-..+|.+++ +|+.+.
T Consensus 11 ~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~-----~i~~~~~di~~~~~~~~~l~~~tg~~tvP~vfi--~g~~iG 79 (97)
T TIGR00365 11 ENPVVLYMKGTPQFPQCGFSARAVQILKAC-----GVPFAYVNVLEDPEIRQGIKEYSNWPTIPQLYV--KGEFVG 79 (97)
T ss_pred cCCEEEEEccCCCCCCCchHHHHHHHHHHc-----CCCEEEEECCCCHHHHHHHHHHhCCCCCCEEEE--CCEEEe
Confidence 345555433 28999999999998775 567778888766543 34456778999876 776543
No 193
>PRK10638 glutaredoxin 3; Provisional
Probab=98.21 E-value=9.4e-06 Score=46.73 Aligned_cols=57 Identities=14% Similarity=0.322 Sum_probs=42.5
Q ss_pred EEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchh----hhhhCCCcceeEEEEEeCCeEEE
Q 032496 50 IANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVE----FSTSWDIKATPTFFFLKDGQQVD 113 (139)
Q Consensus 50 lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~----~~~~~~v~~~Pt~~~~~~g~~~~ 113 (139)
++.|..+||++|++....|++. ++.+..+|++.+++ +.+..|...+|++++ +|+.+.
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~-----gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i~~--~g~~ig 64 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSK-----GVSFQEIPIDGDAAKREEMIKRSGRTTVPQIFI--DAQHIG 64 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHc-----CCCcEEEECCCCHHHHHHHHHHhCCCCcCEEEE--CCEEEe
Confidence 5568899999999999998765 56677778876653 344557889998866 676554
No 194
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=98.14 E-value=1.7e-05 Score=46.48 Aligned_cols=60 Identities=20% Similarity=0.315 Sum_probs=41.7
Q ss_pred CCEEEEEEeC----CCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhh----hhhCCCcceeEEEEEeCCeEE
Q 032496 46 GKIVIANFSA----TWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEF----STSWDIKATPTFFFLKDGQQV 112 (139)
Q Consensus 46 ~k~vlv~f~~----~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~----~~~~~v~~~Pt~~~~~~g~~~ 112 (139)
+.+|+|+-.+ +||++|......|.+. ++.|..+|++.++++ .+..|-..+|++++ +|+.+
T Consensus 7 ~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~-----~i~y~~idv~~~~~~~~~l~~~~g~~tvP~vfi--~g~~i 74 (90)
T cd03028 7 ENPVVLFMKGTPEEPRCGFSRKVVQILNQL-----GVDFGTFDILEDEEVRQGLKEYSNWPTFPQLYV--NGELV 74 (90)
T ss_pred cCCEEEEEcCCCCCCCCcHHHHHHHHHHHc-----CCCeEEEEcCCCHHHHHHHHHHhCCCCCCEEEE--CCEEE
Confidence 4455554332 7999999999988776 466777787766544 34457789999855 77643
No 195
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=98.14 E-value=0.00014 Score=45.51 Aligned_cols=107 Identities=13% Similarity=0.267 Sum_probs=74.9
Q ss_pred ceEEeechhHHHHHHHHHhhCCCEEEEEEeCC--CCh-hh-hhhhHhHHHHHHhCCC--cEEEEEeCCcchhhhhhCCCc
Q 032496 25 NVSLVTTKDIWDQKMSEASKEGKIVIANFSAT--WCG-PC-RMIAPFFSELSEKYPS--LMFLLVDVDELVEFSTSWDIK 98 (139)
Q Consensus 25 ~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~--~C~-~C-~~~~~~l~~~~~~~~~--v~~~~vd~~~~~~~~~~~~v~ 98 (139)
.+.++.+.+.++..=. +++.-+|.|.-. .|. .+ ......|.++++++.+ +.|+.+|.+....+.+.||+.
T Consensus 3 ~~~~l~~~~~~~~~C~----~~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~~~~~~~~fgl~ 78 (130)
T cd02983 3 EIIELTSEDVFEETCE----EKQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGAQLDLEEALNIG 78 (130)
T ss_pred ceEEecCHHHHHhhcc----CCCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCcccHHHHHHcCCC
Confidence 4566666665554331 245555555432 233 23 3567889999999974 899999999999999999985
Q ss_pred --ceeEEEEEeCCeEEEE-EeCC-ChHHHHHHHHHHhhccC
Q 032496 99 --ATPTFFFLKDGQQVDK-LVGA-NKPELQKKVAAAVDSVV 135 (139)
Q Consensus 99 --~~Pt~~~~~~g~~~~~-~~g~-~~~~l~~~i~~~~~~~~ 135 (139)
.+|+++++...+..+. +.|. +.+.+.+|+++++....
T Consensus 79 ~~~~P~v~i~~~~~~KY~~~~~~~t~e~i~~Fv~~~l~Gkl 119 (130)
T cd02983 79 GFGYPAMVAINFRKMKFATLKGSFSEDGINEFLRELSYGRG 119 (130)
T ss_pred ccCCCEEEEEecccCccccccCccCHHHHHHHHHHHHcCCc
Confidence 5999999843332333 4466 99999999999987654
No 196
>PRK10824 glutaredoxin-4; Provisional
Probab=98.08 E-value=2.2e-05 Score=48.02 Aligned_cols=51 Identities=20% Similarity=0.262 Sum_probs=36.8
Q ss_pred CCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhhhh----hCCCcceeEEEEEeCCeEEE
Q 032496 56 TWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFST----SWDIKATPTFFFLKDGQQVD 113 (139)
Q Consensus 56 ~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~----~~~v~~~Pt~~~~~~g~~~~ 113 (139)
||||+|++....|..+ ++.+..+|++.++++.. .-|-..+|.+++ +|+.+.
T Consensus 28 p~Cpyc~~ak~lL~~~-----~i~~~~idi~~d~~~~~~l~~~sg~~TVPQIFI--~G~~IG 82 (115)
T PRK10824 28 PSCGFSAQAVQALSAC-----GERFAYVDILQNPDIRAELPKYANWPTFPQLWV--DGELVG 82 (115)
T ss_pred CCCchHHHHHHHHHHc-----CCCceEEEecCCHHHHHHHHHHhCCCCCCeEEE--CCEEEc
Confidence 6999999999988776 45555667766554433 346678999888 887664
No 197
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.92 E-value=5.3e-05 Score=58.45 Aligned_cols=93 Identities=18% Similarity=0.261 Sum_probs=64.3
Q ss_pred HHHHHhhCCCEEEEEEeCCCChhhhhhhH------hHHHHHHhCCCcEEEEEeCCcchhhhhhCC--------CcceeEE
Q 032496 38 KMSEASKEGKIVIANFSATWCGPCRMIAP------FFSELSEKYPSLMFLLVDVDELVEFSTSWD--------IKATPTF 103 (139)
Q Consensus 38 ~~~~~~~~~k~vlv~f~~~~C~~C~~~~~------~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~--------v~~~Pt~ 103 (139)
.+..+...+||++|-+...||.+|+.|.. .+.++.++ ++.=+.||.++.|++-+.|. -.++|-.
T Consensus 35 Af~~A~~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~--~FV~IKVDREERPDvD~~Ym~~~q~~tG~GGWPLt 112 (667)
T COG1331 35 AFAKAKEEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNE--NFVPVKVDREERPDVDSLYMNASQAITGQGGWPLT 112 (667)
T ss_pred HHHHHHHhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHh--CceeeeEChhhccCHHHHHHHHHHHhccCCCCcee
Confidence 34555578999999999999999999864 33444333 36667788888888766664 5689977
Q ss_pred EEE-eCCeEEEEEeCCCh------HHHHHHHHHHhh
Q 032496 104 FFL-KDGQQVDKLVGANK------PELQKKVAAAVD 132 (139)
Q Consensus 104 ~~~-~~g~~~~~~~g~~~------~~l~~~i~~~~~ 132 (139)
++. .+|++......... ..|...|.++..
T Consensus 113 VfLTPd~kPFfagTY~P~e~r~g~pGf~~lL~~i~~ 148 (667)
T COG1331 113 VFLTPDGKPFFAGTYFPKEDRYGRPGFKQLLEAIRE 148 (667)
T ss_pred EEECCCCceeeeeeecCCcccCCCcCHHHHHHHHHH
Confidence 766 99998875433322 345555555443
No 198
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=97.87 E-value=0.00017 Score=45.91 Aligned_cols=95 Identities=16% Similarity=0.259 Sum_probs=67.8
Q ss_pred HHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCC--cEEEEEeCCc--------chhh---h-hhCCCc----
Q 032496 37 QKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS--LMFLLVDVDE--------LVEF---S-TSWDIK---- 98 (139)
Q Consensus 37 ~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~--v~~~~vd~~~--------~~~~---~-~~~~v~---- 98 (139)
+.+.+...++|++||.-.|+-|+... ....|+.++++|.+ +.++..-|.+ +.++ | ..|||+
T Consensus 16 ~~~~l~~~~GkVlLIVNtASkCGfTp-QYegLe~Ly~ky~~~Gf~VLgFPcNQF~~QEPg~~eEI~~fC~~~YgVtFp~f 94 (162)
T COG0386 16 EPVSLSDYKGKVLLIVNTASKCGFTP-QYEGLEALYKKYKDKGFEVLGFPCNQFGGQEPGSDEEIAKFCQLNYGVTFPMF 94 (162)
T ss_pred CCccHHHhCCcEEEEEEcccccCCcH-hHHHHHHHHHHHhhCCcEEEeccccccccCCCCCHHHHHHHHHhccCceeeee
Confidence 44566678899999999999999866 66778888888874 6655555532 1111 1 133331
Q ss_pred --------------------------------ceeEEEEEeCCeEEEEEeCC-ChHHHHHHHHHHhh
Q 032496 99 --------------------------------ATPTFFFLKDGQQVDKLVGA-NKPELQKKVAAAVD 132 (139)
Q Consensus 99 --------------------------------~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~i~~~~~ 132 (139)
.+=-|++.++|+++.|+... .++++...|+++|+
T Consensus 95 ~Ki~VnG~~a~PLy~~L~~~~~g~~~~~~IkWNFtKFLvdr~G~VV~Rf~p~t~P~d~~~~Ie~lL~ 161 (162)
T COG0386 95 SKIDVNGKNAHPLYKYLKEQKPGKLGGKDIKWNFTKFLVDRDGNVVKRFSPKTKPEDIELAIEKLLA 161 (162)
T ss_pred eEEeecCCCCCcHHHHHHhcCCCCccCCccceeeEEEEEcCCCcEEEeeCCCCChhhHHHHHHHHhc
Confidence 12247777999999999887 88999999998875
No 199
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=97.87 E-value=0.00027 Score=43.00 Aligned_cols=86 Identities=13% Similarity=0.038 Sum_probs=63.1
Q ss_pred CCCEEEEEEeCCCChhhhhhhHhHHHHHHh---CCC-cEEEEEeCCcchhhhhhCCCcc--eeEEEEEeCCe-EEEE-Ee
Q 032496 45 EGKIVIANFSATWCGPCRMIAPFFSELSEK---YPS-LMFLLVDVDELVEFSTSWDIKA--TPTFFFLKDGQ-QVDK-LV 116 (139)
Q Consensus 45 ~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~---~~~-v~~~~vd~~~~~~~~~~~~v~~--~Pt~~~~~~g~-~~~~-~~ 116 (139)
++.+..+.|+ .-..-......+.+++++ +.+ +.|+.+|.+......+.||+.. +|.+.+..... .... ..
T Consensus 15 ~~~~~~~l~f--~~~~~~~~~~~~~~vAk~~~~~kgki~Fv~~d~~~~~~~~~~fgl~~~~~P~i~i~~~~~~~Ky~~~~ 92 (111)
T cd03072 15 EGLPFLILFH--DKDDLESLKEFKQAVARQLISEKGAINFLTADGDKFRHPLLHLGKTPADLPVIAIDSFRHMYLFPDFE 92 (111)
T ss_pred CCCCeEEEEe--cchHHHHHHHHHHHHHHHHHhcCceEEEEEEechHhhhHHHHcCCCHhHCCEEEEEcchhcCcCCCCc
Confidence 3444555555 222346788899999999 876 9999999999887899999986 89999884322 1222 33
Q ss_pred CC-ChHHHHHHHHHHhh
Q 032496 117 GA-NKPELQKKVAAAVD 132 (139)
Q Consensus 117 g~-~~~~l~~~i~~~~~ 132 (139)
+. +.+.|.++++++++
T Consensus 93 ~~~t~~~i~~Fv~~~~~ 109 (111)
T cd03072 93 DVYVPGKLKQFVLDLHS 109 (111)
T ss_pred cccCHHHHHHHHHHHhc
Confidence 44 88999999998875
No 200
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=97.86 E-value=6.7e-05 Score=43.67 Aligned_cols=58 Identities=17% Similarity=0.257 Sum_probs=41.9
Q ss_pred EEEEeCCCChhhhhhhHhHHHHHHhCC-CcEEEEEeC--Ccc------------------------------hhhhhhCC
Q 032496 50 IANFSATWCGPCRMIAPFFSELSEKYP-SLMFLLVDV--DEL------------------------------VEFSTSWD 96 (139)
Q Consensus 50 lv~f~~~~C~~C~~~~~~l~~~~~~~~-~v~~~~vd~--~~~------------------------------~~~~~~~~ 96 (139)
+..|+.+.|++|..+.+.+.++....+ ++.+..... ... ......+|
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 80 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDGGVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALARALG 80 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCCcEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHcC
Confidence 467999999999999999999875554 355544432 221 23456789
Q ss_pred CcceeEEEEEe
Q 032496 97 IKATPTFFFLK 107 (139)
Q Consensus 97 v~~~Pt~~~~~ 107 (139)
+.++|++++..
T Consensus 81 ~~g~Pt~v~~~ 91 (98)
T cd02972 81 VTGTPTFVVNG 91 (98)
T ss_pred CCCCCEEEECC
Confidence 99999999943
No 201
>PTZ00062 glutaredoxin; Provisional
Probab=97.81 E-value=0.00023 Score=47.87 Aligned_cols=72 Identities=10% Similarity=0.200 Sum_probs=46.0
Q ss_pred HHHHHHHHhhCCCEEEEEE---eCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhhhh----hCCCcceeEEEEEe
Q 032496 35 WDQKMSEASKEGKIVIANF---SATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFST----SWDIKATPTFFFLK 107 (139)
Q Consensus 35 ~~~~~~~~~~~~k~vlv~f---~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~----~~~v~~~Pt~~~~~ 107 (139)
....+.....+++++|..= +.|+|++|++....|++. ++.|..+|+++++++.+ ..|-..+|.+++
T Consensus 102 ~~~~v~~li~~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~-----~i~y~~~DI~~d~~~~~~l~~~sg~~TvPqVfI-- 174 (204)
T PTZ00062 102 TVEKIERLIRNHKILLFMKGSKTFPFCRFSNAVVNMLNSS-----GVKYETYNIFEDPDLREELKVYSNWPTYPQLYV-- 174 (204)
T ss_pred HHHHHHHHHhcCCEEEEEccCCCCCCChhHHHHHHHHHHc-----CCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEEE--
Confidence 3344444444444333322 237999999999888765 67777888887665433 345678898887
Q ss_pred CCeEEE
Q 032496 108 DGQQVD 113 (139)
Q Consensus 108 ~g~~~~ 113 (139)
+|+.+.
T Consensus 175 ~G~~IG 180 (204)
T PTZ00062 175 NGELIG 180 (204)
T ss_pred CCEEEc
Confidence 776553
No 202
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=97.74 E-value=0.00024 Score=42.66 Aligned_cols=62 Identities=23% Similarity=0.304 Sum_probs=40.4
Q ss_pred CCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcch-h----hhhhCCCcceeEEEEEeCCeEEE
Q 032496 46 GKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELV-E----FSTSWDIKATPTFFFLKDGQQVD 113 (139)
Q Consensus 46 ~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~-~----~~~~~~v~~~Pt~~~~~~g~~~~ 113 (139)
..+| |.|..+||++|+.+...|.++ -....++.+|.+.+. + +.+.-+-+.+|.+++ +|+.+.
T Consensus 13 ~~~V-VifSKs~C~~c~~~k~ll~~~---~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI--~Gk~iG 79 (104)
T KOG1752|consen 13 ENPV-VIFSKSSCPYCHRAKELLSDL---GVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFI--GGKFIG 79 (104)
T ss_pred cCCE-EEEECCcCchHHHHHHHHHhC---CCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEE--CCEEEc
Confidence 3344 559999999999988888772 113555555555432 2 233334668999888 887663
No 203
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.72 E-value=0.0004 Score=47.87 Aligned_cols=36 Identities=14% Similarity=0.237 Sum_probs=26.7
Q ss_pred CEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEE
Q 032496 47 KIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLL 82 (139)
Q Consensus 47 k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~ 82 (139)
+++++.|+...|++|++..+.+.+.....++++++.
T Consensus 85 ~v~v~~f~d~~Cp~C~~~~~~l~~~~i~~~~~~~~~ 120 (244)
T COG1651 85 PVTVVEFFDYTCPYCKEAFPELKKKYIDDGKVRLVL 120 (244)
T ss_pred CceEEEEecCcCccHHHHHHHHHHHhhhcCCCceEE
Confidence 677888888888888888888877666666544433
No 204
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=97.69 E-value=0.00018 Score=53.43 Aligned_cols=56 Identities=18% Similarity=0.421 Sum_probs=42.6
Q ss_pred EEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhhhh---h---------CCCcceeEEEEEeCCeEE
Q 032496 50 IANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFST---S---------WDIKATPTFFFLKDGQQV 112 (139)
Q Consensus 50 lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~---~---------~~v~~~Pt~~~~~~g~~~ 112 (139)
|+.|..+|||+|++....|.+. ++.|..+|+++++...+ + .|...+|++++ +|+.+
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~~-----gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi--~~~~i 71 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGAN-----DIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFV--GDVHI 71 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC-----CCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEE--CCEEE
Confidence 5679999999999999988775 78888888886663221 2 47789999977 66543
No 205
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=97.69 E-value=0.0013 Score=38.62 Aligned_cols=91 Identities=13% Similarity=0.134 Sum_probs=61.6
Q ss_pred EeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCC-CcEEEEEeCCcchhhhhhCCCcceeEEEEE
Q 032496 28 LVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP-SLMFLLVDVDELVEFSTSWDIKATPTFFFL 106 (139)
Q Consensus 28 ~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~-~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~ 106 (139)
.+.+.++.+..+ ..+++++|-|+..+++ .....+.++++.+. ++.|..+. +..+.+.+++.. |+++++
T Consensus 3 ~i~s~~~l~~~~----~~~~~~vvg~f~~~~~---~~~~~f~~~A~~~r~~~~F~~~~---~~~~~~~~~~~~-~~i~l~ 71 (97)
T cd02981 3 ELTSKEELEKFL----DKDDVVVVGFFKDEES---EEYKTFEKVAESLRDDYGFGHTS---DKEVAKKLKVKP-GSVVLF 71 (97)
T ss_pred ecCCHHHHHHHh----ccCCeEEEEEECCCCc---HHHHHHHHHHHhcccCCeEEEEC---hHHHHHHcCCCC-CceEEe
Confidence 344555555433 4578888999998887 46677788888885 58776665 456777777754 888888
Q ss_pred eCC-eEEEEEeCC-ChHHHHHHHHH
Q 032496 107 KDG-QQVDKLVGA-NKPELQKKVAA 129 (139)
Q Consensus 107 ~~g-~~~~~~~g~-~~~~l~~~i~~ 129 (139)
+.. .....+.|. +.+.|.+||..
T Consensus 72 ~~~~~~~~~y~g~~~~~~l~~fi~~ 96 (97)
T cd02981 72 KPFEEEPVEYDGEFTEESLVEFIKD 96 (97)
T ss_pred CCcccCCccCCCCCCHHHHHHHHHh
Confidence 542 222335565 77888888753
No 206
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=97.65 E-value=0.00067 Score=44.84 Aligned_cols=32 Identities=25% Similarity=0.497 Sum_probs=27.5
Q ss_pred EEEEEeCCCChhhhhhhHhHHHHHHhCCCcEE
Q 032496 49 VIANFSATWCGPCRMIAPFFSELSEKYPSLMF 80 (139)
Q Consensus 49 vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~ 80 (139)
.|.+|+..-||+|....+.+.++.+.++++.+
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i 32 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKLRAEYPDVEI 32 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHHHHHHTTCEE
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHhcCCcE
Confidence 36789999999999999999999999865444
No 207
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=97.65 E-value=0.00069 Score=41.22 Aligned_cols=74 Identities=8% Similarity=0.073 Sum_probs=54.5
Q ss_pred CChhhhhhhHhHHHHHHhCC-C-cEEEEEeCCcchhhhhhCCCcc----eeEEEEEeCCeEEEEEe-CC-ChHHHHHHHH
Q 032496 57 WCGPCRMIAPFFSELSEKYP-S-LMFLLVDVDELVEFSTSWDIKA----TPTFFFLKDGQQVDKLV-GA-NKPELQKKVA 128 (139)
Q Consensus 57 ~C~~C~~~~~~l~~~~~~~~-~-v~~~~vd~~~~~~~~~~~~v~~----~Pt~~~~~~g~~~~~~~-g~-~~~~l~~~i~ 128 (139)
.-..-......+.+++++++ + +.|+.+|.++.....+.||+.. +|++.+........... .. +.+.|.++++
T Consensus 29 ~~~~~~~~~~~~~~vAk~fk~gki~Fv~~D~~~~~~~l~~fgl~~~~~~~P~~~i~~~~~~KY~~~~~~~t~e~i~~F~~ 108 (111)
T cd03073 29 NPKGTNYWRNRVLKVAKDFPDRKLNFAVADKEDFSHELEEFGLDFSGGEKPVVAIRTAKGKKYVMEEEFSDVDALEEFLE 108 (111)
T ss_pred ChhHHHHHHHHHHHHHHHCcCCeEEEEEEcHHHHHHHHHHcCCCcccCCCCEEEEEeCCCCccCCCcccCCHHHHHHHHH
Confidence 33445678899999999998 4 9999999998877889999974 99999884322112121 23 6688888887
Q ss_pred HH
Q 032496 129 AA 130 (139)
Q Consensus 129 ~~ 130 (139)
+.
T Consensus 109 ~f 110 (111)
T cd03073 109 DF 110 (111)
T ss_pred Hh
Confidence 65
No 208
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=97.60 E-value=0.00043 Score=46.73 Aligned_cols=106 Identities=16% Similarity=0.244 Sum_probs=73.4
Q ss_pred EeechhHHHHHHHHHhhCCCEEEEEEeCCCCh-hhhhhhHhHHHHHHhCC-----Cc--EEEEEeCCcc-----------
Q 032496 28 LVTTKDIWDQKMSEASKEGKIVIANFSATWCG-PCRMIAPFFSELSEKYP-----SL--MFLLVDVDEL----------- 88 (139)
Q Consensus 28 ~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~-~C~~~~~~l~~~~~~~~-----~v--~~~~vd~~~~----------- 88 (139)
++...++..+.+.+...++++++|+|.=+.|+ .|-.....+..+.++.. ++ .++.+|.+.+
T Consensus 49 ~f~l~d~~G~~~~~~~l~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y~~~ 128 (207)
T COG1999 49 DFELTDQDGKPFTLKDLKGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKKYAEL 128 (207)
T ss_pred ceeeecCCCCEeeccccCCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHHHhcc
Confidence 34555666666777767899999999988898 89999998888877765 24 4455555321
Q ss_pred ----------------hhhhhhCCCcc--e-------------eEEEEE-eCCeEEEEEeCC-ChHHHHHHHHHHhhc
Q 032496 89 ----------------VEFSTSWDIKA--T-------------PTFFFL-KDGQQVDKLVGA-NKPELQKKVAAAVDS 133 (139)
Q Consensus 89 ----------------~~~~~~~~v~~--~-------------Pt~~~~-~~g~~~~~~~g~-~~~~l~~~i~~~~~~ 133 (139)
.++++.|+|.. + ..++++ .+|++...+.+. .++.+.+.|..+++.
T Consensus 129 ~~~~~~~~ltg~~~~~~~~~k~~~V~~~~v~~~~~~~y~~~Hs~~~~lid~~G~~~~~~~~~~~~~~i~~~l~~l~~~ 206 (207)
T COG1999 129 NFDPRWIGLTGTPEQIEEVAKAYGVFYSKVPLDDSQNYTIDHSAGFYLIDADGRFLGTYDYGEPPEEIAADLKKLLKE 206 (207)
T ss_pred cCCCCeeeeeCCHHHHHHHHHHhcceeeecccCCCCCceeeeeeEEEEECCCCeEEEEecCCCChHHHHHHHHHHhhc
Confidence 22345555542 1 133444 799999888777 788899988888753
No 209
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=97.60 E-value=0.00042 Score=47.32 Aligned_cols=90 Identities=24% Similarity=0.429 Sum_probs=63.3
Q ss_pred HHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCC-cEEEEEeCCc------------------chh---------
Q 032496 39 MSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVDE------------------LVE--------- 90 (139)
Q Consensus 39 ~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~-v~~~~vd~~~------------------~~~--------- 90 (139)
+......++|.||.|.+-.||.-..-...++++.++|.+ +.|+.|-+.+ +..
T Consensus 95 ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~adFl~VYI~EAHpsDgW~~~~~~~~i~qh~sledR~~aA~ 174 (237)
T PF00837_consen 95 ILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDVADFLIVYIEEAHPSDGWAFGNNPYEIPQHRSLEDRLRAAK 174 (237)
T ss_pred HHHhccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhhhheehhhHhhhCcCCCccCCCCceeecCCCCHHHHHHHHH
Confidence 333346789999999999999999999999999999987 5666654432 111
Q ss_pred -------------------hhhhCCCccee-EEEEEeCCeEEEEEe-CC---ChHHHHHHHHHH
Q 032496 91 -------------------FSTSWDIKATP-TFFFLKDGQQVDKLV-GA---NKPELQKKVAAA 130 (139)
Q Consensus 91 -------------------~~~~~~v~~~P-t~~~~~~g~~~~~~~-g~---~~~~l~~~i~~~ 130 (139)
....|| ..| .++++++|+++..-. |. ..+++.++|++.
T Consensus 175 ~l~~~~~~~pi~vD~mdN~~~~~Yg--A~PeRlyIi~~gkv~Y~Gg~GP~~y~~~e~r~~L~~~ 236 (237)
T PF00837_consen 175 LLKEEFPQCPIVVDTMDNNFNKAYG--ALPERLYIIQDGKVVYKGGPGPFGYSPEELREWLEKY 236 (237)
T ss_pred HHHhhCCCCCEEEEccCCHHHHHhC--CCcceEEEEECCEEEEeCCCCCCcCCHHHHHHHHHhc
Confidence 112233 466 456669999887632 33 788888888764
No 210
>KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=97.58 E-value=0.00049 Score=44.29 Aligned_cols=111 Identities=22% Similarity=0.294 Sum_probs=80.0
Q ss_pred CCCceEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCC--CcEEEEEeCCc--------chh-
Q 032496 22 AGGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP--SLMFLLVDVDE--------LVE- 90 (139)
Q Consensus 22 ~~~~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~--------~~~- 90 (139)
...++.+++-.+.....+.+...++|++|+.--|+.|+.-......|..+.++|. ++.++..-|.+ +.+
T Consensus 10 ~~~siydf~~~d~~G~~v~l~~yrGkV~LiVNVAS~Cg~T~~~Y~~l~~L~~ky~~~Gl~ILaFPCNQFg~QEp~~n~Ei 89 (171)
T KOG1651|consen 10 EKGSIYDFSAKDLDGEYVSLSQYRGKVVLIVNVASQCGLTESQYTELNELYEKYKDQGLEILAFPCNQFGNQEPGSNEEI 89 (171)
T ss_pred hhcceeeeEEecCCCCCccHHHhCCeEEEEEEcccccccchhcchhHHHHHHHHhhCCeEEEEeccccccCcCCCCcHHH
Confidence 4456677776666667788888999999999999999999988889999999986 46666665532 222
Q ss_pred ---hhhhCCC-----------------------------------cceeEEEEEeCCeEEEEEeCC-ChHHHHHHHHHHh
Q 032496 91 ---FSTSWDI-----------------------------------KATPTFFFLKDGQQVDKLVGA-NKPELQKKVAAAV 131 (139)
Q Consensus 91 ---~~~~~~v-----------------------------------~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~i~~~~ 131 (139)
++.+|+. +.+=-|++.++|+++.|+... ++-++..-|+++|
T Consensus 90 ~~f~~~r~~~~f~if~KidVNG~~~~PlykfLK~~~~~~lg~~IkWNF~KFLVd~~G~vv~Ry~ptt~p~~~~~dIe~lL 169 (171)
T KOG1651|consen 90 LNFVKVRYGAEFPIFQKIDVNGDNADPLYKFLKKVKGGPLGDDIKWNFTKFLVDKDGHVVKRFSPTTSPLDIEKDIEKLL 169 (171)
T ss_pred HHHHHhccCCCCccEeEEecCCCCCchHHHHHhhcCCCcccccceeeeEEEeECCCCcEEEeeCCCCCccccchhHHHHh
Confidence 2233332 112246777999999999776 7777777788776
Q ss_pred h
Q 032496 132 D 132 (139)
Q Consensus 132 ~ 132 (139)
.
T Consensus 170 ~ 170 (171)
T KOG1651|consen 170 A 170 (171)
T ss_pred c
Confidence 4
No 211
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=97.56 E-value=0.00057 Score=45.22 Aligned_cols=93 Identities=23% Similarity=0.271 Sum_probs=67.6
Q ss_pred HHHHhhCCCEEEEEEe-CCCChhhhhhhHhHHHHHHhCC--CcEEEEEeCCc----------------------------
Q 032496 39 MSEASKEGKIVIANFS-ATWCGPCRMIAPFFSELSEKYP--SLMFLLVDVDE---------------------------- 87 (139)
Q Consensus 39 ~~~~~~~~k~vlv~f~-~~~C~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~---------------------------- 87 (139)
+.+....+|.+++.|| +..-+.|-.....+.+.+.++. ++.++.+.+|.
T Consensus 26 i~l~d~~gkw~VLff~P~DFTfVCpTEi~af~~~y~eF~~~g~eVigvS~Ds~fsH~aW~~~~~~~~gi~~i~~PmiaD~ 105 (194)
T COG0450 26 ITLSDYYGKWVVLFFYPADFTFVCPTEIIAFAKRYEEFQKRGVEVIGVSTDSVFSHKAWKATIREAGGIGKIKFPMIADP 105 (194)
T ss_pred EechhhcCcEEEEEeccCCCCccCcchHHHHHhhhHHHHHcCCEEEEEecCcHHHHHHHHhcHHhcCCccceecceEEcC
Confidence 3344444689999999 8888899988888888888875 68888888864
Q ss_pred chhhhhhCCCccee-------EEEEEeCCeEEEEEe-----CCChHHHHHHHHHHh
Q 032496 88 LVEFSTSWDIKATP-------TFFFLKDGQQVDKLV-----GANKPELQKKVAAAV 131 (139)
Q Consensus 88 ~~~~~~~~~v~~~P-------t~~~~~~g~~~~~~~-----g~~~~~l~~~i~~~~ 131 (139)
..++++.||+-.-. +|++.++|.+..... |.+.+++.+.|+.+.
T Consensus 106 ~~~vs~~ygvl~~~~g~a~R~~FIIDp~g~ir~~~v~~~~iGRn~dEilR~idAlq 161 (194)
T COG0450 106 KGEIARAYGVLHPEEGLALRGTFIIDPDGVIRHILVNPLTIGRNVDEILRVIDALQ 161 (194)
T ss_pred chhHHHHcCCcccCCCcceeEEEEECCCCeEEEEEEecCCCCcCHHHHHHHHHHHH
Confidence 34567778764321 577779998877654 447888888877764
No 212
>KOG0855 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=97.37 E-value=0.00063 Score=43.94 Aligned_cols=68 Identities=22% Similarity=0.111 Sum_probs=48.8
Q ss_pred cccCCCceEEeechhHHHHHHHHHhh-CCCEEEEEEe-CCCChhhhhhhHhHHHHHHhCC--CcEEEEEeCC
Q 032496 19 VEFAGGNVSLVTTKDIWDQKMSEASK-EGKIVIANFS-ATWCGPCRMIAPFFSELSEKYP--SLMFLLVDVD 86 (139)
Q Consensus 19 ~~~~~~~~~~i~~~~~~~~~~~~~~~-~~k~vlv~f~-~~~C~~C~~~~~~l~~~~~~~~--~v~~~~vd~~ 86 (139)
..-.|..+|+++..++....+.+... .+++||++|| +..-|.|.++.--+++-++++. +..++.+..|
T Consensus 62 ~v~~Gd~iPD~tL~dedg~sisLkkit~nk~vV~f~YP~asTPGCTkQaCgFRDnY~k~kka~aeV~GlS~D 133 (211)
T KOG0855|consen 62 KVNKGDAIPDFTLKDEDGKSISLKKITGNKPVVLFFYPAASTPGCTKQACGFRDNYEKFKKAGAEVIGLSGD 133 (211)
T ss_pred eeecCCcCCCcccccCCCCeeeeeeecCCCcEEEEEeccCCCCCcccccccccccHHHHhhcCceEEeeccC
Confidence 34567788998888877777765443 4568999999 6677888888777777666664 4666677665
No 213
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=97.29 E-value=0.015 Score=35.80 Aligned_cols=97 Identities=18% Similarity=0.274 Sum_probs=60.5
Q ss_pred chhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHH----HhCCCcEEEEEeCC-----cchhhhhhCCC--cc
Q 032496 31 TKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELS----EKYPSLMFLLVDVD-----ELVEFSTSWDI--KA 99 (139)
Q Consensus 31 ~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~----~~~~~v~~~~vd~~-----~~~~~~~~~~v--~~ 99 (139)
+.-+|++.+ .+.+.+||.|=...= + =.-+..+.+++ ...+++-+..|.+. +|.+++++|++ ..
T Consensus 10 D~~tFdKvi----~kf~~~LVKFD~ayP-y-GeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i~ke~ 83 (126)
T PF07912_consen 10 DELTFDKVI----PKFKYVLVKFDVAYP-Y-GEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKIDKED 83 (126)
T ss_dssp STTHHHHHG----GGSSEEEEEEEESS----CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-SCCC
T ss_pred cceehhhee----ccCceEEEEEeccCC-C-cchHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCCCccc
Confidence 456777777 456899999964321 1 12223444444 33446888888764 58899999999 57
Q ss_pred eeEEEEEe-CCeEEEEE--eCC-ChHHHHHHHHHHhhc
Q 032496 100 TPTFFFLK-DGQQVDKL--VGA-NKPELQKKVAAAVDS 133 (139)
Q Consensus 100 ~Pt~~~~~-~g~~~~~~--~g~-~~~~l~~~i~~~~~~ 133 (139)
+|.+++|. +...--.+ .+. +.+.|+.|+.+..+.
T Consensus 84 fPv~~LF~~~~~~pv~~p~~~~~t~~~l~~fvk~~t~~ 121 (126)
T PF07912_consen 84 FPVIYLFVGDKEEPVRYPFDGDVTADNLQRFVKSNTGL 121 (126)
T ss_dssp -SEEEEEESSTTSEEEE-TCS-S-HHHHHHHHHHTSS-
T ss_pred CCEEEEecCCCCCCccCCccCCccHHHHHHHHHhCCCe
Confidence 89999995 44444444 454 899999999876443
No 214
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.26 E-value=0.002 Score=45.61 Aligned_cols=106 Identities=18% Similarity=0.326 Sum_probs=74.0
Q ss_pred ceEEeechhHHHHHHHHHhhCCCEEEEEEeC----CCChhhhhhhHhHHHHHHhCC---------CcEEEEEeCCcchhh
Q 032496 25 NVSLVTTKDIWDQKMSEASKEGKIVIANFSA----TWCGPCRMIAPFFSELSEKYP---------SLMFLLVDVDELVEF 91 (139)
Q Consensus 25 ~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~----~~C~~C~~~~~~l~~~~~~~~---------~v~~~~vd~~~~~~~ 91 (139)
.+..+ +.+.+...+. ..-.+-.+++.|.| ..|.-|+....++.-+++.+- .+=|..||.++.++.
T Consensus 41 ~VI~~-n~d~~~~~v~-~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~p~~ 118 (331)
T KOG2603|consen 41 GVIRM-NDDKFSKFVR-PPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDESPQV 118 (331)
T ss_pred CeEEe-cCcchhhhcc-CCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccccHHH
Confidence 34443 4556666665 32445567777776 389999999999988887752 166889999999999
Q ss_pred hhhCCCcceeEEEEE--eCCeEEE------EEeCCChHHHHHHHHHHhh
Q 032496 92 STSWDIKATPTFFFL--KDGQQVD------KLVGANKPELQKKVAAAVD 132 (139)
Q Consensus 92 ~~~~~v~~~Pt~~~~--~~g~~~~------~~~g~~~~~l~~~i~~~~~ 132 (139)
.+.+++..+|++++| ..|++.. ...|...+++.++++...+
T Consensus 119 Fq~l~ln~~P~l~~f~P~~~n~~~s~~~d~~~~g~~Ae~iaqfv~~~tk 167 (331)
T KOG2603|consen 119 FQQLNLNNVPHLVLFSPAKGNKKRSDQMDQQDLGFEAEQIAQFVADRTK 167 (331)
T ss_pred HHHhcccCCCeEEEeCCCccccccCccchhhhcchhHHHHHHHHHHhhh
Confidence 999999999999999 3333331 1123356777777766543
No 215
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=97.23 E-value=0.00065 Score=44.62 Aligned_cols=60 Identities=23% Similarity=0.349 Sum_probs=41.6
Q ss_pred EEeechhHHHHHHHHHhhCCCEEEEEEeCCCCh-hhhhhhHhHHHHHHhCC----CcEEEEEeCC
Q 032496 27 SLVTTKDIWDQKMSEASKEGKIVIANFSATWCG-PCRMIAPFFSELSEKYP----SLMFLLVDVD 86 (139)
Q Consensus 27 ~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~-~C~~~~~~l~~~~~~~~----~v~~~~vd~~ 86 (139)
+++...++..+.+.....++|++||+|.-..|+ .|..+...|.++.++++ ++.++.|.+|
T Consensus 33 ~~f~L~d~~G~~~~~~~~~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvD 97 (174)
T PF02630_consen 33 PDFTLTDQDGKTVTLDDLKGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVD 97 (174)
T ss_dssp ST-EEEETTSSEEEGGGGTTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESS
T ss_pred CCcEEEcCCCCEecHHHhCCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeC
Confidence 334444444555666667899999999999997 89988887877766543 4777777665
No 216
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=97.22 E-value=0.0013 Score=41.95 Aligned_cols=50 Identities=16% Similarity=0.236 Sum_probs=37.1
Q ss_pred CChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchh----hhhhCCC----cceeEEEEEeCCeEEE
Q 032496 57 WCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVE----FSTSWDI----KATPTFFFLKDGQQVD 113 (139)
Q Consensus 57 ~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~----~~~~~~v----~~~Pt~~~~~~g~~~~ 113 (139)
+|++|..+...|+.+ +|.|..+|++.+.+ +.+.++- ..+|.+++ +|+.+.
T Consensus 15 t~~~C~~ak~iL~~~-----~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI--~G~~IG 72 (147)
T cd03031 15 TFEDCNNVRAILESF-----RVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFV--DGRYLG 72 (147)
T ss_pred cChhHHHHHHHHHHC-----CCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEE--CCEEEe
Confidence 899999999988765 67888888876654 3344454 67898887 776554
No 217
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=97.10 E-value=0.0023 Score=42.12 Aligned_cols=26 Identities=27% Similarity=0.502 Sum_probs=21.7
Q ss_pred EEeCCCChhhhhhhHhHHHHHHhCCC
Q 032496 52 NFSATWCGPCRMIAPFFSELSEKYPS 77 (139)
Q Consensus 52 ~f~~~~C~~C~~~~~~l~~~~~~~~~ 77 (139)
+|..|.|++|-...|.+.++...+++
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~~ 27 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYGN 27 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-T
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcCC
Confidence 68899999999999999999999985
No 218
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=96.92 E-value=0.006 Score=34.03 Aligned_cols=58 Identities=17% Similarity=0.148 Sum_probs=49.3
Q ss_pred EEEEEeCCCChhhhhhhHhHHHHHHhCC--CcEEEEEeCCcchhhhhhCCCcceeEEEEE
Q 032496 49 VIANFSATWCGPCRMIAPFFSELSEKYP--SLMFLLVDVDELVEFSTSWDIKATPTFFFL 106 (139)
Q Consensus 49 vlv~f~~~~C~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~ 106 (139)
.+..|-+...+.+......+.++.+.+. .+.+-.+|..+++++++.++|-.+||++-.
T Consensus 3 ~L~Lyv~g~tp~S~~ai~nl~~i~e~~l~~~~~LeVIDv~~~P~lAe~~~ivAtPtLvk~ 62 (72)
T cd02978 3 VLRLYVAGRTPKSERALQNLKRILEELLGGPYELEVIDVLKQPQLAEEDKIVATPTLVKV 62 (72)
T ss_pred EEEEEECCCCchHHHHHHHHHHHHHHhcCCcEEEEEEEcccCHhHHhhCCEEEechhhhc
Confidence 4566667777999999999999888874 388889999999999999999999997754
No 219
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=96.84 E-value=0.019 Score=32.26 Aligned_cols=69 Identities=16% Similarity=0.160 Sum_probs=42.5
Q ss_pred EEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcc----hhhhhhCCCcceeEEEEEeCCeEEEEEeCCChHHHHHH
Q 032496 51 ANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDEL----VEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKK 126 (139)
Q Consensus 51 v~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~----~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~l~~~ 126 (139)
..++.++|++|++.+-.|.+. ++.|-.++++.. +++.+.-+...+|+++...+|..+. ....|.++
T Consensus 3 ~Ly~~~~sp~~~kv~~~L~~~-----gi~y~~~~v~~~~~~~~~~~~~~p~~~vP~l~~~~~~~~l~-----es~~I~~y 72 (77)
T cd03041 3 ELYEFEGSPFCRLVREVLTEL-----ELDVILYPCPKGSPKRDKFLEKGGKVQVPYLVDPNTGVQMF-----ESADIVKY 72 (77)
T ss_pred eEecCCCCchHHHHHHHHHHc-----CCcEEEEECCCChHHHHHHHHhCCCCcccEEEeCCCCeEEE-----cHHHHHHH
Confidence 456788999999998887666 444444555432 2343444567899885433343222 55667776
Q ss_pred HHH
Q 032496 127 VAA 129 (139)
Q Consensus 127 i~~ 129 (139)
|++
T Consensus 73 L~~ 75 (77)
T cd03041 73 LFK 75 (77)
T ss_pred HHH
Confidence 654
No 220
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=96.81 E-value=0.033 Score=42.76 Aligned_cols=82 Identities=13% Similarity=0.110 Sum_probs=59.4
Q ss_pred CEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhhhhhCCCcceeEEEEEeCCeEE-EEEeCC-ChHHHH
Q 032496 47 KIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQV-DKLVGA-NKPELQ 124 (139)
Q Consensus 47 k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~-~~~~g~-~~~~l~ 124 (139)
++|-+.++...|..|..+...+++++...+.+.+...+.+ ...|++.+..+|+-. -++.|. ...+|.
T Consensus 19 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~s~~i~~~~~~~~-----------~~~p~~~~~~~~~~~~i~f~g~P~g~Ef~ 87 (517)
T PRK15317 19 RPIELVASLDDSEKSAELKELLEEIASLSDKITVEEDSLD-----------VRKPSFSITRPGEDTGVRFAGIPMGHEFT 87 (517)
T ss_pred CCEEEEEEeCCCchHHHHHHHHHHHHHhCCceEEEEccCC-----------CCCCEEEEEcCCccceEEEEecCccHHHH
Confidence 4444555555899999999999999988877766443321 237999888765432 466788 889999
Q ss_pred HHHHHHhhccCCCCC
Q 032496 125 KKVAAAVDSVVPSQK 139 (139)
Q Consensus 125 ~~i~~~~~~~~~~~k 139 (139)
.+|..++....+.++
T Consensus 88 s~i~~i~~~~~~~~~ 102 (517)
T PRK15317 88 SLVLALLQVGGHPPK 102 (517)
T ss_pred HHHHHHHHhcCCCCC
Confidence 999999887666543
No 221
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=96.80 E-value=0.036 Score=42.55 Aligned_cols=84 Identities=15% Similarity=0.194 Sum_probs=61.1
Q ss_pred CCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhhhhhCCCcceeEEEEEeCCe-EEEEEeCC-ChHH
Q 032496 45 EGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQ-QVDKLVGA-NKPE 122 (139)
Q Consensus 45 ~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~-~~~~~~g~-~~~~ 122 (139)
++.+.++.|.. .|..|..+...+++++...+.+.+...+.+. ...|++.+..+|+ .--+|.|. ...+
T Consensus 18 ~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~s~ki~~~~~~~~~----------~~~p~~~~~~~~~~~~i~f~g~P~g~E 86 (515)
T TIGR03140 18 ENPVTLVLSAG-SHEKSKELLELLDEIASLSDKISLTQNTADT----------LRKPSFTILRDGADTGIRFAGIPGGHE 86 (515)
T ss_pred CCCEEEEEEeC-CCchhHHHHHHHHHHHHhCCCeEEEEecCCc----------CCCCeEEEecCCcccceEEEecCCcHH
Confidence 34444444444 7999999999999999888777765544332 2459998887765 33567788 8899
Q ss_pred HHHHHHHHhhccCCCCC
Q 032496 123 LQKKVAAAVDSVVPSQK 139 (139)
Q Consensus 123 l~~~i~~~~~~~~~~~k 139 (139)
|..+|..++....+.++
T Consensus 87 f~s~i~~i~~~~~~~~~ 103 (515)
T TIGR03140 87 FTSLVLAILQVGGHGPK 103 (515)
T ss_pred HHHHHHHHHHhcCCCCC
Confidence 99999999887766553
No 222
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=96.77 E-value=0.043 Score=32.34 Aligned_cols=75 Identities=15% Similarity=0.146 Sum_probs=53.3
Q ss_pred hCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhhhhhCCCcceeEEEEEeCCeE-EEEEeCC-ChH
Q 032496 44 KEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQ-VDKLVGA-NKP 121 (139)
Q Consensus 44 ~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~-~~~~~g~-~~~ 121 (139)
.++.+.++.|.... ..|..+...+++++...+.+.+...+.++ ..|++.+..+|+. --++.|. ...
T Consensus 17 l~~pV~l~~f~~~~-~~~~e~~~ll~e~a~lSdkI~~~~~~~~~-----------~~P~~~i~~~~~~~gIrF~GiP~Gh 84 (94)
T cd02974 17 LENPVELVASLDDS-EKSAELLELLEEIASLSDKITLEEDNDDE-----------RKPSFSINRPGEDTGIRFAGIPMGH 84 (94)
T ss_pred CCCCEEEEEEeCCC-cchHHHHHHHHHHHHhCCceEEEEecCCC-----------CCCEEEEecCCCcccEEEEecCCch
Confidence 44556666666655 99999999999999887767665544322 3699999866532 2466788 788
Q ss_pred HHHHHHHHH
Q 032496 122 ELQKKVAAA 130 (139)
Q Consensus 122 ~l~~~i~~~ 130 (139)
++..+|..+
T Consensus 85 Ef~Slilai 93 (94)
T cd02974 85 EFTSLVLAL 93 (94)
T ss_pred hHHHHHHHh
Confidence 888888765
No 223
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=96.63 E-value=0.044 Score=30.56 Aligned_cols=71 Identities=18% Similarity=0.278 Sum_probs=43.9
Q ss_pred EEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCC--cchhhhhhCCCcceeEEEEEe--CCeEEEEEeCCChHHHHH
Q 032496 50 IANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVD--ELVEFSTSWDIKATPTFFFLK--DGQQVDKLVGANKPELQK 125 (139)
Q Consensus 50 lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~--~~~~~~~~~~v~~~Pt~~~~~--~g~~~~~~~g~~~~~l~~ 125 (139)
+..|+.+.|++|++.+-.|... ++.+-.++.+ ...++ +.-+...+|++..-. +|+.+. ....+.+
T Consensus 2 i~Ly~~~~~p~c~kv~~~L~~~-----gi~y~~~~~~~~~~~~~-~~~~~~~vP~l~~~~~~~~~~l~-----eS~~I~~ 70 (77)
T cd03040 2 ITLYQYKTCPFCCKVRAFLDYH-----GIPYEVVEVNPVSRKEI-KWSSYKKVPILRVESGGDGQQLV-----DSSVIIS 70 (77)
T ss_pred EEEEEcCCCHHHHHHHHHHHHC-----CCceEEEECCchhHHHH-HHhCCCccCEEEECCCCCccEEE-----cHHHHHH
Confidence 3457789999999999777655 4444444443 22233 334567899987652 243322 5567777
Q ss_pred HHHHHh
Q 032496 126 KVAAAV 131 (139)
Q Consensus 126 ~i~~~~ 131 (139)
+|++.+
T Consensus 71 yL~~~~ 76 (77)
T cd03040 71 TLKTYL 76 (77)
T ss_pred HHHHHc
Confidence 777654
No 224
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.59 E-value=0.055 Score=36.96 Aligned_cols=43 Identities=23% Similarity=0.414 Sum_probs=34.1
Q ss_pred hhhCCCcceeEEEEEeCCeEEEEEeCC-ChHHHHHHHHHHhhccCCCC
Q 032496 92 STSWDIKATPTFFFLKDGQQVDKLVGA-NKPELQKKVAAAVDSVVPSQ 138 (139)
Q Consensus 92 ~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~i~~~~~~~~~~~ 138 (139)
+.++||+++|+|++ +|+. ...|. +.+.+.+.|.++++.....+
T Consensus 177 A~e~gI~gVP~fv~--d~~~--~V~Gaq~~~v~~~al~~~~~~~~~~~ 220 (225)
T COG2761 177 AQEMGIRGVPTFVF--DGKY--AVSGAQPYDVLEDALRQLLAEKAEEH 220 (225)
T ss_pred HHHCCCccCceEEE--cCcE--eecCCCCHHHHHHHHHHHHhcccccC
Confidence 55789999999999 5443 44588 99999999999998866543
No 225
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=96.52 E-value=0.052 Score=32.30 Aligned_cols=96 Identities=8% Similarity=0.150 Sum_probs=63.7
Q ss_pred EeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCC-cEEEEEeCCc--chhhhhhCCCc----ce
Q 032496 28 LVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVDE--LVEFSTSWDIK----AT 100 (139)
Q Consensus 28 ~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~-v~~~~vd~~~--~~~~~~~~~v~----~~ 100 (139)
.|.+-.+|...+ .....|++.|..+. ..-...+..+.++++...+ -.++.|||.. ...+|+++.+. --
T Consensus 5 ~i~d~KdfKKLL----RTr~NVLvLy~ks~-k~a~~~Lk~~~~~A~~vkG~gT~~~vdCgd~e~kKLCKKlKv~~~~kp~ 79 (112)
T cd03067 5 DISDHKDFKKLL----RTRNNVLVLYSKSA-KSAEALLKLLSDVAQAVKGQGTIAWIDCGDSESRKLCKKLKVDPSSKPK 79 (112)
T ss_pred cccchHHHHHHH----hhcCcEEEEEecch-hhHHHHHHHHHHHHHHhcCceeEEEEecCChHHHHHHHHHccCCCCCCC
Confidence 455666776666 33456666665543 3334455678888888775 6677888876 77899999987 44
Q ss_pred eE-EEEEeCCeEEEEEeCC-ChHHHHHHHH
Q 032496 101 PT-FFFLKDGQQVDKLVGA-NKPELQKKVA 128 (139)
Q Consensus 101 Pt-~~~~~~g~~~~~~~g~-~~~~l~~~i~ 128 (139)
|. +.-|++|.....+... +...+..|+.
T Consensus 80 ~~~LkHYKdG~fHkdYdR~~t~kSmv~Flr 109 (112)
T cd03067 80 PVELKHYKDGDFHTEYNRQLTFKSMVAFLR 109 (112)
T ss_pred cchhhcccCCCccccccchhhHHHHHHHhh
Confidence 53 4555999887766555 6666666553
No 226
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=96.48 E-value=0.0095 Score=41.24 Aligned_cols=99 Identities=20% Similarity=0.325 Sum_probs=66.6
Q ss_pred HHHHHHHhhCCCEEEEEEeCCCCh-hhhhhhHhHHHHHHhCC---Cc----EEEEEeCCcc-------------------
Q 032496 36 DQKMSEASKEGKIVIANFSATWCG-PCRMIAPFFSELSEKYP---SL----MFLLVDVDEL------------------- 88 (139)
Q Consensus 36 ~~~~~~~~~~~k~vlv~f~~~~C~-~C~~~~~~l~~~~~~~~---~v----~~~~vd~~~~------------------- 88 (139)
.+.+......+|.+|+||.-+.|| -|-..+..|..+.+... ++ .|+.+|...+
T Consensus 129 Gk~~te~df~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPeRD~~~~~~eY~~eF~pkllGL 208 (280)
T KOG2792|consen 129 GKRVTEKDFLGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPERDSVEVVAEYVSEFHPKLLGL 208 (280)
T ss_pred CCeecccccccceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCcccCCHHHHHHHHHhcChhhhcc
Confidence 344555667799999999999999 79888887777666542 32 4777777422
Q ss_pred -------hhhhhhCCCcce--e-----------E---EEEEeCCeEEEEEeCC-ChHHHHHHHHHHhhcc
Q 032496 89 -------VEFSTSWDIKAT--P-----------T---FFFLKDGQQVDKLVGA-NKPELQKKVAAAVDSV 134 (139)
Q Consensus 89 -------~~~~~~~~v~~~--P-----------t---~~~~~~g~~~~~~~g~-~~~~l~~~i~~~~~~~ 134 (139)
...++.|.|..- | + +++..+|+.+..+.-. +.+++.+.|.+.+...
T Consensus 209 TGT~eqvk~vak~yRVYfs~gp~d~~~DYlVDHSi~mYLidPeg~Fvd~~GrN~~~~~~~~~I~~~v~~y 278 (280)
T KOG2792|consen 209 TGTTEQVKQVAKKYRVYFSTGPKDEDQDYLVDHSIFMYLIDPEGEFVDYYGRNYDADELADSILKHVASY 278 (280)
T ss_pred cCCHHHHHHHHHHhEEeeccCCCCCCCCeeeeeeEEEEEECCCcceehhhcccCCHHHHHHHHHHHHHhc
Confidence 234566655321 2 2 2333789888877444 8999998888876654
No 227
>cd02990 UAS_FAF1 UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain. FAF1 also contains ubiquitin-associated UBA and nuclear targeting domains, N-terminal to the UAS domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. It is widely expressed in adult and embryonic tissues, and in tumor cell lines, and is localized not only in the cytoplasm where it interacts with Fas, but also in the nucleus. FAF1 contains phosphorylation sites for protein kinase CK2 within the nuclear targeting domain. Phosphorylation influences nuclear localization of FAF1 but does not affect its potentiation of Fas-induced apoptosis. Other functions have also been attributed to FAF1. It inhibits nuclear factor-kB (NF-kB) by interfering with the nuclear
Probab=96.43 E-value=0.11 Score=32.79 Aligned_cols=97 Identities=10% Similarity=0.169 Sum_probs=67.6
Q ss_pred HHHHHHHHH----hhCCCEEEEEEeCCCCh----hhhhhh--HhHHHHHHhCCCcEEEEEeCCcch--------------
Q 032496 34 IWDQKMSEA----SKEGKIVIANFSATWCG----PCRMIA--PFFSELSEKYPSLMFLLVDVDELV-------------- 89 (139)
Q Consensus 34 ~~~~~~~~~----~~~~k~vlv~f~~~~C~----~C~~~~--~~l~~~~~~~~~v~~~~vd~~~~~-------------- 89 (139)
.+.+.+..+ ..+.|+.+||.+++... .|+... +.+-+..+. ++.+..-|+....
T Consensus 5 s~~~Al~~A~~~~~~e~K~L~VYLH~~~~~~t~~Fc~~~L~se~Vi~fl~~--nfv~Wg~dvt~~~~~~~fl~~~~~~~g 82 (136)
T cd02990 5 SLEAAFQEACYRKARDRKLLAIYLHHDESVLSNVFCSQLLCAESIVQYLSQ--NFITWGWDMTKESNKARFLSSCTRHFG 82 (136)
T ss_pred cHHHHHHHHhhhhhhhcceEEEEEcCCCCccHHHHHHHHhcCHHHHHHHHc--CEEEEeeeccchhhhhHHHHhhhhhhh
Confidence 345556655 67789999999998774 666543 344444442 5777777876532
Q ss_pred ----hhhhhCCCcceeEEEEE-eCC---eEEEEEeCC-ChHHHHHHHHHHhh
Q 032496 90 ----EFSTSWDIKATPTFFFL-KDG---QQVDKLVGA-NKPELQKKVAAAVD 132 (139)
Q Consensus 90 ----~~~~~~~v~~~Pt~~~~-~~g---~~~~~~~g~-~~~~l~~~i~~~~~ 132 (139)
...+.++...+|.+.++ +.. .++.+..|. +++++...|.+.+.
T Consensus 83 ~~a~~~~~~~~~~~fP~~avI~~~~~~~~vl~~i~G~~~~~ell~~L~~~ve 134 (136)
T cd02990 83 SVAAQTIRNIKTDQLPAILIIMGKRSSNEVLNVIQGNTGVDELLMRLIEAME 134 (136)
T ss_pred HHHHHHHHhcCcCCCCeEEEEEecCCceEEEEEEECCCCHHHHHHHHHHHHh
Confidence 13455778999998888 332 577888899 99999998887764
No 228
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=96.38 E-value=0.09 Score=31.24 Aligned_cols=94 Identities=14% Similarity=0.139 Sum_probs=58.6
Q ss_pred eEEeechhHHHHHHHHHhh-CCCEEEEEEeCCCChhhhhhhHhHHHHHHhC-CCcEEEEEeCCcchhhhhhCCCcceeEE
Q 032496 26 VSLVTTKDIWDQKMSEASK-EGKIVIANFSATWCGPCRMIAPFFSELSEKY-PSLMFLLVDVDELVEFSTSWDIKATPTF 103 (139)
Q Consensus 26 ~~~i~~~~~~~~~~~~~~~-~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~-~~v~~~~vd~~~~~~~~~~~~v~~~Pt~ 103 (139)
+..+.+.++.+..+ . ++.+++|-|+..--+ .....+.++++.+ .++.|.... +..+...+++. .|.+
T Consensus 2 v~~i~~~~~~e~~~----~~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d~~F~~~~---~~~~~~~~~~~-~~~i 70 (102)
T cd03066 2 VEIINSERELQAFE----NIEDDIKLIGYFKSEDS---EHYKAFEEAAEEFHPYIKFFATF---DSKVAKKLGLK-MNEV 70 (102)
T ss_pred ceEcCCHHHHHHHh----cccCCeEEEEEECCCCC---HHHHHHHHHHHhhhcCCEEEEEC---cHHHHHHcCCC-CCcE
Confidence 34555666665555 3 466777777765333 3556677788887 457775433 34556777775 5888
Q ss_pred EEEeC-CeEEEEE-eCC-ChHHHHHHHHHH
Q 032496 104 FFLKD-GQQVDKL-VGA-NKPELQKKVAAA 130 (139)
Q Consensus 104 ~~~~~-g~~~~~~-~g~-~~~~l~~~i~~~ 130 (139)
+++++ ......+ .|. +.+.|.+||...
T Consensus 71 ~l~~~~~e~~~~y~~g~~~~~~l~~fi~~~ 100 (102)
T cd03066 71 DFYEPFMEEPVTIPDKPYSEEELVDFVEEH 100 (102)
T ss_pred EEeCCCCCCCcccCCCCCCHHHHHHHHHHh
Confidence 88844 2222335 455 888999998753
No 229
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.38 E-value=0.017 Score=32.27 Aligned_cols=56 Identities=20% Similarity=0.354 Sum_probs=38.1
Q ss_pred EEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcc--------------h--hhhhhCCCcceeEEEEEeCCeEE
Q 032496 51 ANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDEL--------------V--EFSTSWDIKATPTFFFLKDGQQV 112 (139)
Q Consensus 51 v~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~--------------~--~~~~~~~v~~~Pt~~~~~~g~~~ 112 (139)
+.|++.-||.|..+...++++ ++.+-.|++.+. + +-++..|--++|.+++. +|+++
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl-----~v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~~-d~~vV 76 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERL-----NVDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLTD-DGKVV 76 (85)
T ss_pred eeeccccCcchHHHHHHHHHc-----CCCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEeC-CCcEE
Confidence 569999999999999888877 444445555332 1 12455677799998874 44443
No 230
>PRK09301 circadian clock protein KaiB; Provisional
Probab=96.35 E-value=0.016 Score=34.59 Aligned_cols=80 Identities=15% Similarity=0.135 Sum_probs=61.6
Q ss_pred CCCEEEEEEeCCCChhhhhhhHhHHHHHHhCC-C-cEEEEEeCCcchhhhhhCCCcceeEEEEEeCCeEEEEEeCC--Ch
Q 032496 45 EGKIVIANFSATWCGPCRMIAPFFSELSEKYP-S-LMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGA--NK 120 (139)
Q Consensus 45 ~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~-~-v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~--~~ 120 (139)
++..++=.|.+...+..+.....+.++.+.+- + +.+-.||+.+++++++.++|-.+||++-.- -.+..++.|- +.
T Consensus 4 ~~~~~LrLyVag~tp~S~~ai~nL~~icE~~l~g~y~LeVIDv~~qPelAE~~~IvATPTLIK~~-P~P~rriiGDlsd~ 82 (103)
T PRK09301 4 RKTYILKLYVAGNTPNSVRALKTLKNILETEFKGVYALKVIDVLKNPQLAEEDKILATPTLAKIL-PPPVRKIIGDLSDR 82 (103)
T ss_pred CceEEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHhHHhHCCeEEecHHhhcC-CCCcceeecccccH
Confidence 34677777889999999999999999877653 3 888899999999999999999999976653 3445566665 44
Q ss_pred HHHHH
Q 032496 121 PELQK 125 (139)
Q Consensus 121 ~~l~~ 125 (139)
+.+..
T Consensus 83 ~kVL~ 87 (103)
T PRK09301 83 EKVLI 87 (103)
T ss_pred HHHHH
Confidence 54443
No 231
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=96.35 E-value=0.018 Score=33.31 Aligned_cols=71 Identities=18% Similarity=0.137 Sum_probs=55.9
Q ss_pred CEEEEEEeCCCChhhhhhhHhHHHHHHhCC-C-cEEEEEeCCcchhhhhhCCCcceeEEEEEeCCeEEEEEeCC
Q 032496 47 KIVIANFSATWCGPCRMIAPFFSELSEKYP-S-LMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGA 118 (139)
Q Consensus 47 k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~-~-v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~ 118 (139)
..++=.|.+...+.++.....+.++.+.+- + +.+-.+|..+++++++.+++-.+||++-.- -.+..+..|-
T Consensus 3 ~~~LrLyvag~~p~S~~ai~nl~~i~e~~l~g~y~LeVIDv~~qP~lAE~~~IvATPtLIK~~-P~P~rriiGd 75 (87)
T TIGR02654 3 TYVLKLYVAGNTPNSVRALKTLKNILETEFQGVYALKVIDVLKNPQLAEEDKILATPTLSKIL-PPPVRKIIGD 75 (87)
T ss_pred eEEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHhHHhHCCEEEecHHhhcC-CCCcceeecc
Confidence 456667778889999999999999877653 3 888899999999999999999999977652 2344555565
No 232
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=96.23 E-value=0.16 Score=34.24 Aligned_cols=80 Identities=21% Similarity=0.469 Sum_probs=53.9
Q ss_pred EEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCc------------------chhhhhhCCCc--ceeEEEEEeCC
Q 032496 50 IANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDE------------------LVEFSTSWDIK--ATPTFFFLKDG 109 (139)
Q Consensus 50 lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~------------------~~~~~~~~~v~--~~Pt~~~~~~g 109 (139)
|=+|.+..|+.|-.....|.++... ++|..+....|- ....+..++.. .+|.+++ ||
T Consensus 2 VELFTSQGCsSCPpAD~~L~~l~~~-~~Vi~LafHVDYWDylGWkD~fa~~~~t~RQr~Y~~~~~~~~vYTPQ~vV--nG 78 (202)
T PF06764_consen 2 VELFTSQGCSSCPPADRLLSELAAR-PDVIALAFHVDYWDYLGWKDPFASPEFTQRQRAYARRFGLRSVYTPQVVV--NG 78 (202)
T ss_dssp EEEEE-TT-TT-HHHHHHHHHHHHH-TSSEEEEEE-STT-SSSS--TT--HHHHHHHHHHHHHTT-S---SSEEEE--TT
T ss_pred eeEecCCCCCCCcHHHHHHHHhhcC-CCEEEEEecCCcccCCCCCCccCChhHHHHHHHHHHHhCCCCCcCCeEEE--CC
Confidence 3468899999999999999999988 477776666652 12234455543 5888888 88
Q ss_pred eEEEEEeCCChHHHHHHHHHHhhcc
Q 032496 110 QQVDKLVGANKPELQKKVAAAVDSV 134 (139)
Q Consensus 110 ~~~~~~~g~~~~~l~~~i~~~~~~~ 134 (139)
+... .|.+...+...|.+.....
T Consensus 79 ~~~~--~g~~~~~~~~ai~~~~~~~ 101 (202)
T PF06764_consen 79 REHR--VGSDRAAVEAAIQAARARP 101 (202)
T ss_dssp TEEE--ETT-HHHHHHHHHHHHHTT
T ss_pred eeee--eccCHHHHHHHHHHhhccC
Confidence 8654 4778899999999887663
No 233
>COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=96.22 E-value=0.05 Score=34.72 Aligned_cols=67 Identities=18% Similarity=0.094 Sum_probs=48.4
Q ss_pred ccCCCceEEeechhHHHHHHHHHhhCCCEEEEEEe-CCCChhhhhhhHhHHHHHHhCCCcEEEEEeCC
Q 032496 20 EFAGGNVSLVTTKDIWDQKMSEASKEGKIVIANFS-ATWCGPCRMIAPFFSELSEKYPSLMFLLVDVD 86 (139)
Q Consensus 20 ~~~~~~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~-~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~ 86 (139)
...|..+|++.....--..+.+....+|..++..+ +-+-+.|......+++.+.++.++.++.|..|
T Consensus 18 ~~vGd~ap~ftl~~~dL~~v~l~~~~gk~~vi~v~PSiDT~VC~~qvr~Fn~~aa~~~~~~Vl~IS~D 85 (158)
T COG2077 18 PQVGDKAPDFTLVGKDLNDVSLADFAGKKKVISVFPSIDTPVCATQVRKFNEEAAKLGNTVVLCISMD 85 (158)
T ss_pred CccCCcCCceEEEcCcccceeccccCCceEEEEEccCCCCchhhHHHHHHHHHHhccCCcEEEEEeCC
Confidence 45566677666444434445555566776666655 88999999999999999999988777777775
No 234
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=96.21 E-value=0.11 Score=38.66 Aligned_cols=95 Identities=14% Similarity=0.222 Sum_probs=61.3
Q ss_pred HHHHHHhhCCCEEEEEEeCCCChhhhhhhH-hH-HHHHHhCC--CcEEEEEeCC--cchhhhhhCCCcceeEEEEE-eCC
Q 032496 37 QKMSEASKEGKIVIANFSATWCGPCRMIAP-FF-SELSEKYP--SLMFLLVDVD--ELVEFSTSWDIKATPTFFFL-KDG 109 (139)
Q Consensus 37 ~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~-~l-~~~~~~~~--~v~~~~vd~~--~~~~~~~~~~v~~~Pt~~~~-~~g 109 (139)
..+..+ +.++.++|.|-+-.......+.. .+ .......- .+..+.|+.. ....+..-|.+..+|.++++ ..|
T Consensus 10 eAIa~a-K~kkalfVVyI~gddE~s~kl~r~~w~d~~vs~~ls~~fVaIkiqags~aa~qFs~IYp~v~vPs~ffIg~sG 88 (506)
T KOG2507|consen 10 EAIAEA-KGKKALFVVYISGDDEESDKLNRLTWTDASVSDSLSKYFVAIKIQAGSVAATQFSAIYPYVSVPSIFFIGFSG 88 (506)
T ss_pred HHHHHh-hcCCeEEEEEEecCchHhhHHhhccchhhhhhhhhhcceEEEEeccCchhhhhhhhhcccccccceeeecCCC
Confidence 345444 44556666666666666666552 22 22211111 2444444443 34567778889999999888 899
Q ss_pred eEEEEEeCC-ChHHHHHHHHHHhh
Q 032496 110 QQVDKLVGA-NKPELQKKVAAAVD 132 (139)
Q Consensus 110 ~~~~~~~g~-~~~~l~~~i~~~~~ 132 (139)
.++....|. +.++|...|++...
T Consensus 89 tpLevitg~v~adeL~~~i~Kv~~ 112 (506)
T KOG2507|consen 89 TPLEVITGFVTADELASSIEKVWL 112 (506)
T ss_pred ceeEEeeccccHHHHHHHHHHHHH
Confidence 999999999 88999888887654
No 235
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=95.99 E-value=0.13 Score=32.46 Aligned_cols=72 Identities=17% Similarity=0.324 Sum_probs=52.9
Q ss_pred EEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhhhhhCCCc----ceeEEEEEeCCeEEEEEeCC-ChHH
Q 032496 48 IVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIK----ATPTFFFLKDGQQVDKLVGA-NKPE 122 (139)
Q Consensus 48 ~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~----~~Pt~~~~~~g~~~~~~~g~-~~~~ 122 (139)
.-++.+++|.|+=|......++.. ++.+-.+..++-..+.++|||. +-=|.++ +|..+. |- ..+.
T Consensus 26 ~~~~vyksPnCGCC~~w~~~mk~~-----Gf~Vk~~~~~d~~alK~~~gIp~e~~SCHT~VI--~Gy~vE---GHVPa~a 95 (149)
T COG3019 26 TEMVVYKSPNCGCCDEWAQHMKAN-----GFEVKVVETDDFLALKRRLGIPYEMQSCHTAVI--NGYYVE---GHVPAEA 95 (149)
T ss_pred eeEEEEeCCCCccHHHHHHHHHhC-----CcEEEEeecCcHHHHHHhcCCChhhccccEEEE--cCEEEe---ccCCHHH
Confidence 447778899999999999888632 7777788888888888888873 3336666 776544 55 6777
Q ss_pred HHHHHHH
Q 032496 123 LQKKVAA 129 (139)
Q Consensus 123 l~~~i~~ 129 (139)
+.+++.+
T Consensus 96 I~~ll~~ 102 (149)
T COG3019 96 IARLLAE 102 (149)
T ss_pred HHHHHhC
Confidence 7777655
No 236
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=95.98 E-value=0.062 Score=29.46 Aligned_cols=67 Identities=10% Similarity=0.083 Sum_probs=37.7
Q ss_pred EEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhhhhhCCCcceeEEEEEeCCeEEEEEeCCChHHHHHHH
Q 032496 52 NFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKV 127 (139)
Q Consensus 52 ~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~l~~~i 127 (139)
.++.++|++|++.+-.+....- .+..+.++........+..+-..+|++.. .+|..+. ....|.++|
T Consensus 3 Ly~~~~~p~~~rvr~~L~~~gl---~~~~~~~~~~~~~~~~~~~~~~~vP~L~~-~~~~~l~-----es~aI~~yL 69 (71)
T cd03037 3 LYIYEHCPFCVKARMIAGLKNI---PVEQIILQNDDEATPIRMIGAKQVPILEK-DDGSFMA-----ESLDIVAFI 69 (71)
T ss_pred eEecCCCcHhHHHHHHHHHcCC---CeEEEECCCCchHHHHHhcCCCccCEEEe-CCCeEee-----hHHHHHHHH
Confidence 4678899999999887765521 23334444443333334445567898754 3354322 344555544
No 237
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=95.97 E-value=0.055 Score=29.72 Aligned_cols=57 Identities=11% Similarity=0.074 Sum_probs=37.7
Q ss_pred EEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCc-chhhhhhCCCcceeEEEEEeCCeE
Q 032496 51 ANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDE-LVEFSTSWDIKATPTFFFLKDGQQ 111 (139)
Q Consensus 51 v~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~-~~~~~~~~~v~~~Pt~~~~~~g~~ 111 (139)
..|+.++|++|++.+-.+.+..- .+.++.++... .+++.+......+|++.. .+|..
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~gl---~~e~~~v~~~~~~~~~~~~np~~~vP~L~~-~~g~~ 59 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAGI---TVELREVELKNKPAEMLAASPKGTVPVLVL-GNGTV 59 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcCC---CcEEEEeCCCCCCHHHHHHCCCCCCCEEEE-CCCcE
Confidence 35778999999999887765522 25555666543 345555567789999965 33544
No 238
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=95.82 E-value=0.19 Score=29.97 Aligned_cols=90 Identities=10% Similarity=0.172 Sum_probs=55.9
Q ss_pred EEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCC-CcEEEEEeCCcchhhhhhCCCcceeEEEE
Q 032496 27 SLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP-SLMFLLVDVDELVEFSTSWDIKATPTFFF 105 (139)
Q Consensus 27 ~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~-~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~ 105 (139)
..+.+.++.+..+ ..+++++|-|+...-. .....+.++++.+. ++.|.... ...+...+++ .|++++
T Consensus 3 ~~i~s~~~l~~f~----~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d~~F~~~~---~~~~~~~~~~--~~~ivl 70 (104)
T cd03069 3 VELRTEAEFEKFL----SDDDASVVGFFEDEDS---KLLSEFLKAADTLRESFRFAHTS---DKQLLEKYGY--GEGVVL 70 (104)
T ss_pred cccCCHHHHHHHh----ccCCcEEEEEEcCCCc---hHHHHHHHHHHhhhhcCEEEEEC---hHHHHHhcCC--CCceEE
Confidence 3445555555544 3466777777765443 35567777787774 57775543 3466678888 577777
Q ss_pred Ee---------CCeEEEEEeCC-ChHHHHHHHHHH
Q 032496 106 LK---------DGQQVDKLVGA-NKPELQKKVAAA 130 (139)
Q Consensus 106 ~~---------~g~~~~~~~g~-~~~~l~~~i~~~ 130 (139)
++ .+.. .+.|. +.+.|.+||...
T Consensus 71 ~~p~~~~~k~de~~~--~y~g~~~~~~l~~fi~~~ 103 (104)
T cd03069 71 FRPPRLSNKFEDSSV--KFDGDLDSSKIKKFIREN 103 (104)
T ss_pred EechhhhcccCcccc--cccCcCCHHHHHHHHHhh
Confidence 72 2222 35565 778899888653
No 239
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.81 E-value=0.043 Score=40.13 Aligned_cols=81 Identities=19% Similarity=0.358 Sum_probs=62.6
Q ss_pred CCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhhhhhCCCcceeEEEEEeCCeEEEEEeCC-ChHHH
Q 032496 45 EGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGA-NKPEL 123 (139)
Q Consensus 45 ~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~l 123 (139)
.+..-+=-|++-.|..|-.+...|+-+.-..|++.-..||-.-..+-.+.-+|+++||+++ ||+.... |. +.++|
T Consensus 115 ~g~~~FETy~SltC~nCPDVVQALN~msvlNp~I~H~~IdGa~Fq~Evear~IMaVPtvfl--nGe~fg~--GRmtleei 190 (520)
T COG3634 115 DGDFHFETYFSLTCHNCPDVVQALNLMSVLNPRIKHTAIDGALFQDEVEARNIMAVPTVFL--NGEEFGQ--GRMTLEEI 190 (520)
T ss_pred CCceeEEEEEEeeccCChHHHHHHHHHHhcCCCceeEEecchhhHhHHHhccceecceEEE--cchhhcc--cceeHHHH
Confidence 3555566778889999999999999998888999999999876666666678999999988 7765443 55 66666
Q ss_pred HHHHHH
Q 032496 124 QKKVAA 129 (139)
Q Consensus 124 ~~~i~~ 129 (139)
...|..
T Consensus 191 laki~~ 196 (520)
T COG3634 191 LAKIDT 196 (520)
T ss_pred HHHhcC
Confidence 655543
No 240
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=95.77 E-value=0.012 Score=35.31 Aligned_cols=32 Identities=13% Similarity=0.315 Sum_probs=24.9
Q ss_pred EEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCc
Q 032496 51 ANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDE 87 (139)
Q Consensus 51 v~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~ 87 (139)
..|+.++|++|++....|++. ++.|-.+|+.+
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~-----~i~~~~idi~~ 33 (105)
T cd02977 2 TIYGNPNCSTSRKALAWLEEH-----GIEYEFIDYLK 33 (105)
T ss_pred EEEECCCCHHHHHHHHHHHHc-----CCCcEEEeecc
Confidence 468899999999999888764 66666777654
No 241
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.68 E-value=0.11 Score=34.75 Aligned_cols=42 Identities=12% Similarity=0.119 Sum_probs=34.0
Q ss_pred hhhhCCCcceeEEEEEeCCeEEEEEeC--C-ChHHHHHHHHHHhh
Q 032496 91 FSTSWDIKATPTFFFLKDGQQVDKLVG--A-NKPELQKKVAAAVD 132 (139)
Q Consensus 91 ~~~~~~v~~~Pt~~~~~~g~~~~~~~g--~-~~~~l~~~i~~~~~ 132 (139)
++.++++.++||+++-.||+....-.| . +.+.+..++.+.+.
T Consensus 166 l~~rlg~~GfPTl~le~ng~~~~l~~g~y~~~~~~~~arl~~~~~ 210 (212)
T COG3531 166 LMQRLGAAGFPTLALERNGTMYVLGTGAYFGSPDAWLARLAQRLA 210 (212)
T ss_pred HHHHhccCCCCeeeeeeCCceEeccCCcccCCcHHHHHHHHHHHh
Confidence 466889999999999999998877667 3 77888888877654
No 242
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=95.58 E-value=0.17 Score=32.98 Aligned_cols=64 Identities=23% Similarity=0.247 Sum_probs=48.7
Q ss_pred hhhHhHHHHHHhCC-CcEEEEEeCCcchhhhhhCCCcceeEEEEEeCC-eEEEEEeC--CChHHHHHHHHHH
Q 032496 63 MIAPFFSELSEKYP-SLMFLLVDVDELVEFSTSWDIKATPTFFFLKDG-QQVDKLVG--ANKPELQKKVAAA 130 (139)
Q Consensus 63 ~~~~~l~~~~~~~~-~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g-~~~~~~~g--~~~~~l~~~i~~~ 130 (139)
.....+.++++.+. ++.|+.+. +.++++.+++.. |++++++++ +....+.| .+.+.|.+||...
T Consensus 7 ~~~~~f~~~A~~~~~~~~F~~~~---~~~~~~~~~~~~-p~i~~~k~~~~~~~~y~~~~~~~~~l~~fI~~~ 74 (184)
T PF13848_consen 7 ELFEIFEEAAEKLKGDYQFGVTF---NEELAKKYGIKE-PTIVVYKKFDEKPVVYDGDKFTPEELKKFIKKN 74 (184)
T ss_dssp HHHHHHHHHHHHHTTTSEEEEEE----HHHHHHCTCSS-SEEEEEECTTTSEEEESSSTTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCCcEEEEEc---HHHHHHHhCCCC-CcEEEeccCCCCceecccccCCHHHHHHHHHHh
Confidence 34567788888887 58888887 677889999999 999999663 33344556 3899999999875
No 243
>PHA03075 glutaredoxin-like protein; Provisional
Probab=95.47 E-value=0.034 Score=33.77 Aligned_cols=30 Identities=27% Similarity=0.559 Sum_probs=26.9
Q ss_pred CEEEEEEeCCCChhhhhhhHhHHHHHHhCC
Q 032496 47 KIVIANFSATWCGPCRMIAPFFSELSEKYP 76 (139)
Q Consensus 47 k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~ 76 (139)
|.+++.|..|.|+-|......+.++..+|.
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~ledeY~ 31 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKELEDEYD 31 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHHhhcccc
Confidence 568899999999999999999988888874
No 244
>KOG0852 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=95.15 E-value=0.17 Score=33.20 Aligned_cols=94 Identities=20% Similarity=0.230 Sum_probs=59.8
Q ss_pred HHHHHHhhCCCEEEEEEe-CCCChhhhhhhHhHHHHHHhCC--CcEEEEEeCC---------------------------
Q 032496 37 QKMSEASKEGKIVIANFS-ATWCGPCRMIAPFFSELSEKYP--SLMFLLVDVD--------------------------- 86 (139)
Q Consensus 37 ~~~~~~~~~~k~vlv~f~-~~~C~~C~~~~~~l~~~~~~~~--~v~~~~vd~~--------------------------- 86 (139)
+.+.+..+.+|.|++.|| ..+--.|-...-.+.+.+.++. +..++.+.+|
T Consensus 24 ~e~~L~dy~gkyvvlfFyplDftfVcPteIiafSd~~~eF~~~n~eVig~S~DS~fshlAW~ntprk~gGlg~~~iPlls 103 (196)
T KOG0852|consen 24 KEIKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSDRAPEFRKLNTEVLGISTDSVFSHLAWINTPRKQGGLGPLNIPLLS 103 (196)
T ss_pred eEEeehhhcccEEEEEecCCceeeECchhhhhhhhhHHHHHhcCCeEEEEeccchhhhhhHhcCchhhCCcCccccceee
Confidence 345555677899999998 5555567666666666666654 3444444443
Q ss_pred -cchhhhhhCCC----ccee---EEEEEeCCeEEEEE-----eCCChHHHHHHHHHH
Q 032496 87 -ELVEFSTSWDI----KATP---TFFFLKDGQQVDKL-----VGANKPELQKKVAAA 130 (139)
Q Consensus 87 -~~~~~~~~~~v----~~~P---t~~~~~~g~~~~~~-----~g~~~~~l~~~i~~~ 130 (139)
.+.++++.||| .+++ .+|+..+|...+.- .|.+.++....++.+
T Consensus 104 D~~~~IsrdyGvL~~~~G~~lRglfIId~~gi~R~it~NDlpvgRSVdE~lRLvqAf 160 (196)
T KOG0852|consen 104 DLNHEISRDYGVLKEDEGIALRGLFIIDPDGILRQITINDLPVGRSVDETLRLVQAF 160 (196)
T ss_pred ccchhhHHhcCceecCCCcceeeeEEEccccceEEeeecccCCCccHHHHHHHHHHH
Confidence 34667888987 3555 46666888776532 244777777766654
No 245
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=95.06 E-value=0.045 Score=34.27 Aligned_cols=33 Identities=18% Similarity=0.426 Sum_probs=24.8
Q ss_pred EEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCc
Q 032496 50 IANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDE 87 (139)
Q Consensus 50 lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~ 87 (139)
+..|+.++|+.|++....|.+. ++.|-.+|+.+
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~-----gi~~~~idi~~ 34 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEH-----DIPFTERNIFS 34 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc-----CCCcEEeeccC
Confidence 4567899999999998877654 56666667653
No 246
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=95.05 E-value=0.037 Score=33.57 Aligned_cols=33 Identities=18% Similarity=0.401 Sum_probs=25.6
Q ss_pred EEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcc
Q 032496 51 ANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDEL 88 (139)
Q Consensus 51 v~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~ 88 (139)
..|+.++|+.|++....|++. ++.|-.+|+.++
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~-----~i~~~~idi~~~ 34 (111)
T cd03036 2 KFYEYPKCSTCRKAKKWLDEH-----GVDYTAIDIVEE 34 (111)
T ss_pred EEEECCCCHHHHHHHHHHHHc-----CCceEEecccCC
Confidence 457899999999999888664 677777777644
No 247
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=94.86 E-value=0.052 Score=33.18 Aligned_cols=34 Identities=12% Similarity=0.377 Sum_probs=26.5
Q ss_pred EEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcch
Q 032496 51 ANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELV 89 (139)
Q Consensus 51 v~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~ 89 (139)
..|+.++|+.|+.....|++. ++.|..+|+.+++
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~-----~i~~~~idi~~~~ 35 (117)
T TIGR01617 2 KVYGSPNCTTCKKARRWLEAN-----GIEYQFIDIGEDG 35 (117)
T ss_pred EEEeCCCCHHHHHHHHHHHHc-----CCceEEEecCCCh
Confidence 457899999999999888763 6777777876543
No 248
>KOG2640 consensus Thioredoxin [Function unknown]
Probab=94.50 E-value=0.015 Score=41.31 Aligned_cols=86 Identities=21% Similarity=0.329 Sum_probs=62.0
Q ss_pred CCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEe-CCcchhhhhhCCCcceeEEEEEeCCeEEEEEeCC-ChHHH
Q 032496 46 GKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVD-VDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGA-NKPEL 123 (139)
Q Consensus 46 ~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd-~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~l 123 (139)
..++-+.||+.||+..+...+.+.-....++.+....++ .-.-+...++|++.+.|++++... ..-.++.|. ....|
T Consensus 76 ~~~vs~~fy~s~C~fsr~~~~~fd~~~sl~~~i~h~~vee~~~lpsv~s~~~~~~~ps~~~~n~-t~~~~~~~~r~l~sL 154 (319)
T KOG2640|consen 76 NDYVSLLFYASWCPFSRAVRPEFDVRSSLFSSIQHFAVEESQALPSVFSSYGIHSEPSNLMLNQ-TCPASYRGERDLASL 154 (319)
T ss_pred CCcccccchhcccCcccccCcccchhhhhccccccccHHHHhhcccchhccccccCCcceeecc-ccchhhcccccHHHH
Confidence 568889999999999999999998888888754444432 223456788999999999888632 222344455 67777
Q ss_pred HHHHHHHhh
Q 032496 124 QKKVAAAVD 132 (139)
Q Consensus 124 ~~~i~~~~~ 132 (139)
..+..+++.
T Consensus 155 v~fy~~i~~ 163 (319)
T KOG2640|consen 155 VNFYTEITP 163 (319)
T ss_pred HHHHHhhcc
Confidence 777776654
No 249
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=94.50 E-value=0.2 Score=34.86 Aligned_cols=38 Identities=11% Similarity=0.071 Sum_probs=31.3
Q ss_pred hCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEE
Q 032496 44 KEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFL 81 (139)
Q Consensus 44 ~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~ 81 (139)
..+|+.+++..+.|||+|...+=.|-....+|+++.+.
T Consensus 56 ~~Gk~~v~~igw~gCP~~A~~sW~L~~ALsrfGn~~l~ 93 (249)
T PF06053_consen 56 PNGKPEVIFIGWEGCPYCAAESWALYIALSRFGNFSLE 93 (249)
T ss_pred CCCeeEEEEEecccCccchhhHHHHHHHHHhcCCeeeE
Confidence 56899999999999999998877777777788876433
No 250
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=94.48 E-value=0.063 Score=32.27 Aligned_cols=33 Identities=6% Similarity=0.196 Sum_probs=25.2
Q ss_pred EEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcc
Q 032496 51 ANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDEL 88 (139)
Q Consensus 51 v~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~ 88 (139)
..|+.++|+.|++....|++- ++.|-.+|+.++
T Consensus 2 ~iy~~~~C~~crka~~~L~~~-----~i~~~~~di~~~ 34 (105)
T cd03035 2 TLYGIKNCDTVKKARKWLEAR-----GVAYTFHDYRKD 34 (105)
T ss_pred EEEeCCCCHHHHHHHHHHHHc-----CCCeEEEecccC
Confidence 468899999999999887655 666667776543
No 251
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=94.46 E-value=0.14 Score=27.16 Aligned_cols=55 Identities=15% Similarity=0.021 Sum_probs=35.1
Q ss_pred EEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcch--hhhhhCCCcceeEEEEEeCCeE
Q 032496 52 NFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELV--EFSTSWDIKATPTFFFLKDGQQ 111 (139)
Q Consensus 52 ~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~--~~~~~~~v~~~Pt~~~~~~g~~ 111 (139)
.|+.++|+.|.+.+-.+....- .+....++..... .+.+..+...+|++.. +|..
T Consensus 3 ly~~~~~~~~~~~~~~l~~~~i---~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~--~~~~ 59 (71)
T cd00570 3 LYYFPGSPRSLRVRLALEEKGL---PYELVPVDLGEGEQEEFLALNPLGKVPVLED--GGLV 59 (71)
T ss_pred EEeCCCCccHHHHHHHHHHcCC---CcEEEEeCCCCCCCHHHHhcCCCCCCCEEEE--CCEE
Confidence 5778899999998887766622 2444445443322 2455567788998876 4543
No 252
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=94.28 E-value=0.44 Score=25.94 Aligned_cols=69 Identities=12% Similarity=0.044 Sum_probs=40.7
Q ss_pred EEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcc-hhhhhhCCCcceeEEEEEeCCeEEEEEeCCChHHHHHHHHH
Q 032496 51 ANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDEL-VEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKVAA 129 (139)
Q Consensus 51 v~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~-~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~l~~~i~~ 129 (139)
..|+.++|++|++.+-.++...- ++....++.... +++.+......+|++. .+|..+. ....|...|.+
T Consensus 2 ~ly~~~~~~~~~~v~~~l~~~gi---~~~~~~v~~~~~~~~~~~~~p~~~vP~l~--~~~~~l~-----es~aI~~yL~~ 71 (73)
T cd03059 2 TLYSGPDDVYSHRVRIVLAEKGV---SVEIIDVDPDNPPEDLAELNPYGTVPTLV--DRDLVLY-----ESRIIMEYLDE 71 (73)
T ss_pred EEEECCCChhHHHHHHHHHHcCC---ccEEEEcCCCCCCHHHHhhCCCCCCCEEE--ECCEEEE-----cHHHHHHHHHh
Confidence 45778999999999887755522 233444454432 3444555677899774 2443222 45556665543
No 253
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=94.23 E-value=0.45 Score=32.72 Aligned_cols=43 Identities=21% Similarity=0.430 Sum_probs=36.7
Q ss_pred hCCCEEEEEEeCCCChhhhhhhHhHHHHHHh-----CCCcEEEEEeCC
Q 032496 44 KEGKIVIANFSATWCGPCRMIAPFFSELSEK-----YPSLMFLLVDVD 86 (139)
Q Consensus 44 ~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~-----~~~v~~~~vd~~ 86 (139)
..|+++||-+-..+|..|......|+.|..+ +++|.|+.||--
T Consensus 24 ~~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~ 71 (238)
T PF04592_consen 24 SLGHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQ 71 (238)
T ss_pred cCCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCC
Confidence 5689999999999999999999999888755 457999999864
No 254
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=94.13 E-value=0.51 Score=26.11 Aligned_cols=69 Identities=13% Similarity=0.135 Sum_probs=47.7
Q ss_pred EeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCc-chhhhhhCCCcceeEEEEEeCCeEEEEEeCCChHHHHHHHHHHh
Q 032496 53 FSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDE-LVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKVAAAV 131 (139)
Q Consensus 53 f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~-~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~l~~~i~~~~ 131 (139)
++.++|++|++++-.++...- .+.+..++..+ ...+.+..+-..+|++. .+|..+. +...|.+.|++.-
T Consensus 2 y~~~~Sp~~~kv~~~l~~~~i---~~~~~~v~~~~~~~~~~~~~p~~~vPvL~--~~g~~l~-----dS~~I~~yL~~~~ 71 (75)
T PF13417_consen 2 YGFPGSPYSQKVRLALEEKGI---PYELVPVDPEEKRPEFLKLNPKGKVPVLV--DDGEVLT-----DSAAIIEYLEERY 71 (75)
T ss_dssp EEETTSHHHHHHHHHHHHHTE---EEEEEEEBTTSTSHHHHHHSTTSBSSEEE--ETTEEEE-----SHHHHHHHHHHHS
T ss_pred CCcCCChHHHHHHHHHHHcCC---eEEEeccCcccchhHHHhhcccccceEEE--ECCEEEe-----CHHHHHHHHHHHc
Confidence 678999999999887766521 25555665554 35566666788999997 4576444 6677777777654
No 255
>PF07689 KaiB: KaiB domain; InterPro: IPR011649 The cyanobacterial clock proteins KaiA and KaiB are proposed as regulators of the circadian rhythm in cyanobacteria. Mutations in both proteins have been reported to alter or abolish circadian rhythmicity. KaiB adopts an alpha-beta meander motif and is found to be a dimer [].; GO: 0048511 rhythmic process; PDB: 1T4Y_A 1T4Z_A 1R5P_B 2QKE_F 1VGL_A 1WWJ_D.
Probab=94.09 E-value=0.023 Score=32.59 Aligned_cols=53 Identities=25% Similarity=0.233 Sum_probs=43.5
Q ss_pred EeCCCChhhhhhhHhHHHHHHhCC--CcEEEEEeCCcchhhhhhCCCcceeEEEE
Q 032496 53 FSATWCGPCRMIAPFFSELSEKYP--SLMFLLVDVDELVEFSTSWDIKATPTFFF 105 (139)
Q Consensus 53 f~~~~C~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~ 105 (139)
|-+...+.+......++.+.+.+- .+.+-.||+.+++++++.++|-.+||++-
T Consensus 3 yV~g~~~~s~~a~~~l~~l~~~~l~~~~~LeVIDv~~~P~lAe~~~ivAtPtLik 57 (82)
T PF07689_consen 3 YVAGRTPSSERAIENLRRLCEEYLGGRYELEVIDVLEQPELAEEDRIVATPTLIK 57 (82)
T ss_dssp EESSBHHHHHHHHHHHHHHHHCHCTTTEEEEEEETTTSHSHHTTTEEECHHHHHT
T ss_pred EECCCChHHHHHHHHHHHHHHhhCCCcEEEEEEEcccCHhHHhHCCeeecceEee
Confidence 445556677888888888877753 38899999999999999999999998764
No 256
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=93.93 E-value=0.13 Score=31.29 Aligned_cols=34 Identities=18% Similarity=0.368 Sum_probs=25.6
Q ss_pred EEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcc
Q 032496 50 IANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDEL 88 (139)
Q Consensus 50 lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~ 88 (139)
+..|+.++|+.|++....|++. ++.|-.+|+.++
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~-----gi~~~~idi~~~ 35 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEH-----QIPFEERNLFKQ 35 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC-----CCceEEEecCCC
Confidence 3467899999999999888664 666667777543
No 257
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=93.65 E-value=0.22 Score=30.17 Aligned_cols=49 Identities=27% Similarity=0.365 Sum_probs=40.7
Q ss_pred HHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCC--CcEEEEEeCCc
Q 032496 38 KMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP--SLMFLLVDVDE 87 (139)
Q Consensus 38 ~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~ 87 (139)
.+.+...++|++||.=.|+.|+.-. ....|+++.++|. ++.++..-+.+
T Consensus 13 ~v~l~~y~Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~~gl~ILaFPcnq 63 (108)
T PF00255_consen 13 PVSLSKYKGKVLLIVNVASKCGYTK-QYKQLNELYEKYKDKGLEILAFPCNQ 63 (108)
T ss_dssp EEEGGGGTTSEEEEEEEESSSTTHH-HHHHHHHHHHHHGGGTEEEEEEEBST
T ss_pred EECHHHcCCCEEEEEecccccCCcc-ccHHHHHHHHHHhcCCeEEEeeehHH
Confidence 3455668899999999999999988 8889999999997 57777777753
No 258
>PRK12559 transcriptional regulator Spx; Provisional
Probab=93.62 E-value=0.15 Score=31.97 Aligned_cols=32 Identities=13% Similarity=0.408 Sum_probs=23.6
Q ss_pred EEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCC
Q 032496 50 IANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVD 86 (139)
Q Consensus 50 lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~ 86 (139)
+..|+.++|+.|++....|++- ++.|-.+|+.
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~-----gi~~~~~di~ 33 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEEN-----QIDYTEKNIV 33 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc-----CCCeEEEEee
Confidence 4568899999999988777654 5555566654
No 259
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=93.53 E-value=0.54 Score=25.68 Aligned_cols=56 Identities=20% Similarity=0.168 Sum_probs=36.4
Q ss_pred EEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCc----chhhhhhCCCcceeEEEEEeCCeE
Q 032496 51 ANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDE----LVEFSTSWDIKATPTFFFLKDGQQ 111 (139)
Q Consensus 51 v~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~----~~~~~~~~~v~~~Pt~~~~~~g~~ 111 (139)
..|+.++|+.|++.+-.+.+..- ++....++..+ .+++.+......+|++.. +|..
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~gi---~~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~--~~~~ 61 (74)
T cd03045 2 DLYYLPGSPPCRAVLLTAKALGL---ELNLKEVNLMKGEHLKPEFLKLNPQHTVPTLVD--NGFV 61 (74)
T ss_pred EEEeCCCCCcHHHHHHHHHHcCC---CCEEEEecCccCCcCCHHHHhhCcCCCCCEEEE--CCEE
Confidence 35788999999988887766522 24445555432 245555566778999964 4543
No 260
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=93.42 E-value=0.72 Score=28.60 Aligned_cols=54 Identities=13% Similarity=0.102 Sum_probs=35.3
Q ss_pred CcEEEEEeCCcchh----------hhhhCCCcceeEEEEEeCCeEEEEEeCCChHHHHHHHHHHhh
Q 032496 77 SLMFLLVDVDELVE----------FSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKVAAAVD 132 (139)
Q Consensus 77 ~v~~~~vd~~~~~~----------~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~l~~~i~~~~~ 132 (139)
++.+.+.|..+++. +...-|....|.+++ ||+++..-..++.++|.+|+.--..
T Consensus 40 gv~v~RyNL~~~P~aF~~n~~V~~~L~~~G~e~LPitlV--dGeiv~~G~YPt~eEl~~~~~i~~~ 103 (123)
T PF06953_consen 40 GVEVERYNLAQNPQAFVENPEVNQLLQTEGAEALPITLV--DGEIVKTGRYPTNEELAEWLGISFS 103 (123)
T ss_dssp T-EEEEEETTT-TTHHHHSHHHHHHHHHH-GGG-SEEEE--TTEEEEESS---HHHHHHHHT--GG
T ss_pred CceEEEEccccCHHHHHhCHHHHHHHHHcCcccCCEEEE--CCEEEEecCCCCHHHHHHHhCCCcc
Confidence 79999999987654 234458899999999 9999887444499999988765433
No 261
>COG5429 Uncharacterized secreted protein [Function unknown]
Probab=93.28 E-value=0.41 Score=32.94 Aligned_cols=82 Identities=18% Similarity=0.328 Sum_probs=56.5
Q ss_pred CEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCC------------------cchhhhhhCCCcceeEEEEEeC
Q 032496 47 KIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVD------------------ELVEFSTSWDIKATPTFFFLKD 108 (139)
Q Consensus 47 k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~------------------~~~~~~~~~~v~~~Pt~~~~~~ 108 (139)
.-||=.|.+..|..|-.....|.+++++ +++.-...+.| ......+.|+-.+++|=-.+-|
T Consensus 42 ~~VVELfTSQGCsSCPPAd~~l~k~a~~-~~vlALsyhVdYWdYlGWkDtlar~enTeRQ~aY~~a~g~~~vyTPQavvn 120 (261)
T COG5429 42 LGVVELFTSQGCSSCPPADANLAKLADD-PGVLALSYHVDYWDYLGWKDTLARKENTERQRAYARAFGARGVYTPQAVVN 120 (261)
T ss_pred ceEEEEeecCCcCCCChHHHHHHHhccC-CCEEEEEEeecccccCCccccccchhhhHHHHHHHHhhccCCCCCchheee
Confidence 4556667799999999999999999877 35444444433 1234566777777666444448
Q ss_pred CeEEEEEeCCChHHHHHHHHHHh
Q 032496 109 GQQVDKLVGANKPELQKKVAAAV 131 (139)
Q Consensus 109 g~~~~~~~g~~~~~l~~~i~~~~ 131 (139)
|+.... |.+..+|.+.|...-
T Consensus 121 Gr~~~~--Gad~~~i~~~i~a~~ 141 (261)
T COG5429 121 GRVHAN--GADPGAIEDAIAAMA 141 (261)
T ss_pred chhhhc--CCCHHHHHHHHHHhh
Confidence 876554 668888888887764
No 262
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=93.27 E-value=1.3 Score=27.81 Aligned_cols=71 Identities=20% Similarity=0.206 Sum_probs=40.8
Q ss_pred hHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhhhhhCCCcceeEEEEEeCCe
Q 032496 33 DIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQ 110 (139)
Q Consensus 33 ~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~ 110 (139)
..+.+.+..+...+-++++.=+-.. .-+.....+.++..+-.. .++.=++.+.++|+|+.+|++++.+++.
T Consensus 12 ~~Lk~l~~~a~~~g~~~VlRG~~~~--~~~~T~~~i~~L~~~~~~-----~~v~IdP~lF~~f~I~~VPa~V~~~~~~ 82 (130)
T TIGR02742 12 PLLKQLLDQAEALGAPLVIRGLLDN--GFKATATRIQSLIKDGGK-----SGVQIDPQWFKQFDITAVPAFVVVKDGL 82 (130)
T ss_pred HHHHHHHHHHHHhCCeEEEeCCCCC--CHHHHHHHHHHHHhcCCC-----CcEEEChHHHhhcCceEcCEEEEECCCC
Confidence 3444555555454544444323333 123444455555444322 2222368899999999999999998774
No 263
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=92.98 E-value=0.41 Score=26.01 Aligned_cols=52 Identities=15% Similarity=0.174 Sum_probs=34.6
Q ss_pred EEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCC----cchhhhhhCCCcceeEEEE
Q 032496 51 ANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVD----ELVEFSTSWDIKATPTFFF 105 (139)
Q Consensus 51 v~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~----~~~~~~~~~~v~~~Pt~~~ 105 (139)
..|+.++|++|++.+-.+....- .+....++.. ..+++.+......+|++..
T Consensus 2 ~Ly~~~~s~~~~~~~~~L~~~~l---~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~ 57 (74)
T cd03051 2 KLYDSPTAPNPRRVRIFLAEKGI---DVPLVTVDLAAGEQRSPEFLAKNPAGTVPVLEL 57 (74)
T ss_pred EEEeCCCCcchHHHHHHHHHcCC---CceEEEeecccCccCCHHHHhhCCCCCCCEEEe
Confidence 35778899999999988866622 2344455542 2344555566778999975
No 264
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=92.34 E-value=0.31 Score=30.58 Aligned_cols=32 Identities=13% Similarity=0.392 Sum_probs=23.7
Q ss_pred EEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCC
Q 032496 50 IANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVD 86 (139)
Q Consensus 50 lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~ 86 (139)
+..|+.++|+.|+.....|++- ++.|-.+|+.
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~-----~i~~~~~d~~ 33 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNAH-----QLSYKEQNLG 33 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHHc-----CCCeEEEECC
Confidence 3467899999999988776553 5666667664
No 265
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=91.67 E-value=1.6 Score=25.09 Aligned_cols=53 Identities=9% Similarity=0.097 Sum_probs=34.6
Q ss_pred EEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcc-hhhhhhCCCcceeEEEE
Q 032496 50 IANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDEL-VEFSTSWDIKATPTFFF 105 (139)
Q Consensus 50 lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~-~~~~~~~~v~~~Pt~~~ 105 (139)
+..|+.+.|++|++.+-.+....- ++.++.++.... .++.+......+|++..
T Consensus 19 ~~Ly~~~~sp~~~kv~~~L~~~gl---~~~~~~v~~~~~~~~~~~~np~~~vPvL~~ 72 (89)
T cd03055 19 IRLYSMRFCPYAQRARLVLAAKNI---PHEVININLKDKPDWFLEKNPQGKVPALEI 72 (89)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCC---CCeEEEeCCCCCcHHHHhhCCCCCcCEEEE
Confidence 444668889999998877765421 245555555433 33555556778999875
No 266
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=90.93 E-value=2.3 Score=25.72 Aligned_cols=86 Identities=15% Similarity=0.197 Sum_probs=61.9
Q ss_pred CCEEEEEEeCCCChhhhhhhHhHHHHHHhCC---CcEEEEEeCCcchhhh----hhCCCc-ceeEEEEE--eCCeEEEE-
Q 032496 46 GKIVIANFSATWCGPCRMIAPFFSELSEKYP---SLMFLLVDVDELVEFS----TSWDIK-ATPTFFFL--KDGQQVDK- 114 (139)
Q Consensus 46 ~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~---~v~~~~vd~~~~~~~~----~~~~v~-~~Pt~~~~--~~g~~~~~- 114 (139)
+...++.|-.+..+.-..|.+.++++++++. +..|+.||.|+-+-+. +.|+|. .-|.+=++ .+..-+..
T Consensus 20 ~g~~IvAFaee~dpdG~eFl~ilk~vA~~nt~np~LsiIWIDPD~FPllv~yWektF~IDl~~PqIGVV~vtdadSvW~~ 99 (120)
T cd03074 20 DGIHIVAFAEEEDPDGYEFLEILKEVARDNTDNPDLSIIWIDPDDFPLLVPYWEKTFGIDLFRPQIGVVNVTDADSVWME 99 (120)
T ss_pred CCceEEEEeccCCccHHHHHHHHHHHHHhcCcCCCceEEEECCccCchhhHHHHhhcCcccCCCceeeEecccccceeEe
Confidence 4677888999999999999999999999985 5999999999877654 355653 34765555 33332322
Q ss_pred Ee---C-CChHHHHHHHHHHh
Q 032496 115 LV---G-ANKPELQKKVAAAV 131 (139)
Q Consensus 115 ~~---g-~~~~~l~~~i~~~~ 131 (139)
.. . .+.++|+++|+..+
T Consensus 100 m~~~~d~~t~~~Le~WiedVL 120 (120)
T cd03074 100 MDDDEDLPTAEELEDWIEDVL 120 (120)
T ss_pred cccccccCcHHHHHHHHHhhC
Confidence 11 2 27888999988754
No 267
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=90.63 E-value=2.6 Score=25.67 Aligned_cols=70 Identities=20% Similarity=0.203 Sum_probs=38.2
Q ss_pred hHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhhhhhCCCcceeEEEEEeC
Q 032496 33 DIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKD 108 (139)
Q Consensus 33 ~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~ 108 (139)
..+.+.+..+...+-++++.=+.+. .=......+.++..+.+.. .++.=++.+.++|+|..+|++++.++
T Consensus 11 ~~L~~l~~~a~~~~~~~V~RG~~~g--~~~~t~~~~~~l~~~~~~~----~~v~IdP~~F~~y~I~~VPa~V~~~~ 80 (113)
T PF09673_consen 11 ASLRNLLKQAERAGVVVVFRGFPDG--SFKPTAKAIQELLRKDDPC----PGVQIDPRLFRQYNITAVPAFVVVKD 80 (113)
T ss_pred HHHHHHHHHHHhCCcEEEEECCCCC--CHHHHHHHHHHHhhccCCC----cceeEChhHHhhCCceEcCEEEEEcC
Confidence 4444555555444333322222222 2233344444444443322 23333688899999999999999977
No 268
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=90.55 E-value=2.5 Score=25.37 Aligned_cols=71 Identities=7% Similarity=0.028 Sum_probs=43.2
Q ss_pred eEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhC-CCcEEEEEeCCcchhhhhhCCCcceeEEE
Q 032496 26 VSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKY-PSLMFLLVDVDELVEFSTSWDIKATPTFF 104 (139)
Q Consensus 26 ~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~-~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~ 104 (139)
+..+.+.++++..+. ..++++||-|+...-+ .....+.++++.+ .++.|.... +..+...+++.. |.++
T Consensus 2 v~~i~s~~ele~f~~---~~~~~~VVG~F~~~~~---~~~~~F~~vA~~~Rdd~~F~~t~---~~~~~~~~~~~~-~~vv 71 (107)
T cd03068 2 SKQLQTLKQVQEFLR---DGDDVIIIGVFSGEED---PAYQLYQDAANSLREDYKFHHTF---DSEIFKSLKVSP-GQLV 71 (107)
T ss_pred ceEcCCHHHHHHHHh---cCCCEEEEEEECCCCC---HHHHHHHHHHHhcccCCEEEEEC---hHHHHHhcCCCC-CceE
Confidence 345666666666552 2226777777765433 3556677888888 457775543 346667778764 5555
Q ss_pred EE
Q 032496 105 FL 106 (139)
Q Consensus 105 ~~ 106 (139)
++
T Consensus 72 l~ 73 (107)
T cd03068 72 VF 73 (107)
T ss_pred EE
Confidence 55
No 269
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=90.39 E-value=0.48 Score=31.42 Aligned_cols=35 Identities=20% Similarity=0.353 Sum_probs=25.8
Q ss_pred hhhhhhCCCcceeEEEEEeCCeEEEEEeCC-ChHHHHHHH
Q 032496 89 VEFSTSWDIKATPTFFFLKDGQQVDKLVGA-NKPELQKKV 127 (139)
Q Consensus 89 ~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~i 127 (139)
...+...||.++||+++ +|+. ...|. +.+.|.+.|
T Consensus 165 ~~~a~~~gv~G~Pt~vv--~g~~--~~~G~~~~~~~~~~i 200 (201)
T cd03024 165 EARARQLGISGVPFFVF--NGKY--AVSGAQPPEVFLQAL 200 (201)
T ss_pred HHHHHHCCCCcCCEEEE--CCeE--eecCCCCHHHHHHHh
Confidence 34566789999999999 6653 34577 788877765
No 270
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=90.30 E-value=2.8 Score=25.66 Aligned_cols=82 Identities=11% Similarity=0.090 Sum_probs=51.7
Q ss_pred EEEEEe-CCCChhhhhhhHhHHHHHHhCC--CcEEEEE-eCCcc-----------hhhhhhCCCccee-EEEEE-eCCeE
Q 032496 49 VIANFS-ATWCGPCRMIAPFFSELSEKYP--SLMFLLV-DVDEL-----------VEFSTSWDIKATP-TFFFL-KDGQQ 111 (139)
Q Consensus 49 vlv~f~-~~~C~~C~~~~~~l~~~~~~~~--~v~~~~v-d~~~~-----------~~~~~~~~v~~~P-t~~~~-~~g~~ 111 (139)
+||.|. +...+.-+.+...|......+. ++.++.+ +-... ..+.+.|++..-. +++++ ++|.+
T Consensus 12 ~lvv~aps~~d~~~~~q~~~L~~~~~~l~eRdi~v~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~~~~f~~vLiGKDG~v 91 (118)
T PF13778_consen 12 LLVVFAPSADDPRYQQQLEELQNNRCGLDERDIVVIVITGDGARSPGKPLSPEDIQALRKRLRIPPGGFTVVLIGKDGGV 91 (118)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhhhhccccCceEEEEEeCCccccccCcCCHHHHHHHHHHhCCCCCceEEEEEeCCCcE
Confidence 334344 4566666777777777444444 3555554 32222 2677888865222 34444 99999
Q ss_pred EEEEeCC-ChHHHHHHHHHH
Q 032496 112 VDKLVGA-NKPELQKKVAAA 130 (139)
Q Consensus 112 ~~~~~g~-~~~~l~~~i~~~ 130 (139)
..++... +.++|-+.|+.+
T Consensus 92 K~r~~~p~~~~~lf~~ID~M 111 (118)
T PF13778_consen 92 KLRWPEPIDPEELFDTIDAM 111 (118)
T ss_pred EEecCCCCCHHHHHHHHhCC
Confidence 9998777 899998888764
No 271
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=89.37 E-value=0.78 Score=30.13 Aligned_cols=27 Identities=30% Similarity=0.641 Sum_probs=24.6
Q ss_pred EEEEeCCCChhhhhhhHhHHHHHHhCC
Q 032496 50 IANFSATWCGPCRMIAPFFSELSEKYP 76 (139)
Q Consensus 50 lv~f~~~~C~~C~~~~~~l~~~~~~~~ 76 (139)
|.+|+.+.||+|....+.|.++.+.++
T Consensus 3 i~~~~D~~cp~c~~~~~~l~~l~~~~~ 29 (193)
T cd03025 3 LYYFIDPLCGWCYGFEPLLEKLKEEYG 29 (193)
T ss_pred EEEEECCCCchhhCchHHHHHHHHHhC
Confidence 568889999999999999999999984
No 272
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=88.98 E-value=2.4 Score=22.86 Aligned_cols=56 Identities=18% Similarity=0.262 Sum_probs=34.7
Q ss_pred EEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCc----chhhhhhCCCcceeEEEEEeCCeEE
Q 032496 52 NFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDE----LVEFSTSWDIKATPTFFFLKDGQQV 112 (139)
Q Consensus 52 ~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~----~~~~~~~~~v~~~Pt~~~~~~g~~~ 112 (139)
.|+.+.|+.|.+.+-.+....- .+....++... .+++.+......+|++.. +|..+
T Consensus 3 Ly~~~~~~~~~~v~~~l~~~~~---~~~~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~--~~~~i 62 (73)
T cd03056 3 LYGFPLSGNCYKVRLLLALLGI---PYEWVEVDILKGETRTPEFLALNPNGEVPVLEL--DGRVL 62 (73)
T ss_pred EEeCCCCccHHHHHHHHHHcCC---CcEEEEecCCCcccCCHHHHHhCCCCCCCEEEE--CCEEE
Confidence 5778899999998877766522 24444555422 234444445678999875 45443
No 273
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=88.51 E-value=0.8 Score=30.04 Aligned_cols=33 Identities=24% Similarity=0.391 Sum_probs=23.4
Q ss_pred hhhhhCCCcceeEEEEEeCCeEEEEEeCC-ChHHHHHHH
Q 032496 90 EFSTSWDIKATPTFFFLKDGQQVDKLVGA-NKPELQKKV 127 (139)
Q Consensus 90 ~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~i 127 (139)
..+.++||.++|++++ +|+ .+.|. ..+.+.+.|
T Consensus 158 ~~a~~~gi~gvPtfvv--~g~---~~~G~~~l~~~~~~l 191 (192)
T cd03022 158 EEAIARGVFGVPTFVV--DGE---MFWGQDRLDMLEEAL 191 (192)
T ss_pred HHHHHcCCCcCCeEEE--CCe---eecccccHHHHHHHh
Confidence 4466789999999999 775 44577 556555543
No 274
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=88.43 E-value=0.89 Score=27.69 Aligned_cols=32 Identities=9% Similarity=0.057 Sum_probs=23.3
Q ss_pred EEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCC
Q 032496 50 IANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVD 86 (139)
Q Consensus 50 lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~ 86 (139)
+..|+.+.|+.|++....|++- ++.|-.+|+.
T Consensus 2 i~iy~~p~C~~crkA~~~L~~~-----gi~~~~~d~~ 33 (113)
T cd03033 2 IIFYEKPGCANNARQKALLEAA-----GHEVEVRDLL 33 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHHc-----CCCcEEeehh
Confidence 3567899999999988777554 5556666654
No 275
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=86.91 E-value=1.1 Score=26.91 Aligned_cols=57 Identities=19% Similarity=0.338 Sum_probs=38.1
Q ss_pred EeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhhhhhCCCc--ceeEEEE-EeCCe
Q 032496 53 FSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIK--ATPTFFF-LKDGQ 110 (139)
Q Consensus 53 f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~--~~Pt~~~-~~~g~ 110 (139)
||-.+|+.|......+... .....+.|+.+.-....++...+++. ..-+.+. ..+|+
T Consensus 2 ~YDg~C~lC~~~~~~l~~~-d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~ 61 (114)
T PF04134_consen 2 FYDGDCPLCRREVRFLRRR-DRGGRLRFVDIQSEPDQALLASYGISPEDADSRLHLIDDGE 61 (114)
T ss_pred EECCCCHhHHHHHHHHHhc-CCCCCEEEEECCChhhhhHHHhcCcCHHHHcCeeEEecCCC
Confidence 7889999999999988887 22335777776545555555666654 3444444 47776
No 276
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=84.80 E-value=1.6 Score=26.56 Aligned_cols=32 Identities=9% Similarity=0.153 Sum_probs=24.1
Q ss_pred EEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCc
Q 032496 51 ANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDE 87 (139)
Q Consensus 51 v~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~ 87 (139)
..|+.+.|+.|++....|++. ++.+..+|+.+
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~~-----~i~~~~~di~~ 33 (114)
T TIGR00014 2 TIYHNPRCSKSRNTLALLEDK-----GIEPEVVKYLK 33 (114)
T ss_pred EEEECCCCHHHHHHHHHHHHC-----CCCeEEEeccC
Confidence 467899999999999887664 56666666643
No 277
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=84.08 E-value=6.9 Score=23.39 Aligned_cols=71 Identities=23% Similarity=0.285 Sum_probs=42.5
Q ss_pred HHHHHhhCCCEEEEEEeC---CCChhhhhhhHhHHHHHHhCCC-cEEEEEeCCcchhhhhhCC-CcceeEEE-EEeCCeE
Q 032496 38 KMSEASKEGKIVIANFSA---TWCGPCRMIAPFFSELSEKYPS-LMFLLVDVDELVEFSTSWD-IKATPTFF-FLKDGQQ 111 (139)
Q Consensus 38 ~~~~~~~~~k~vlv~f~~---~~C~~C~~~~~~l~~~~~~~~~-v~~~~vd~~~~~~~~~~~~-v~~~Pt~~-~~~~g~~ 111 (139)
.+.....+++++|..=.+ |.|+++.+....|... + +.|..+|+-+++++..... ...+||+= +|-+|..
T Consensus 7 ~I~~~i~~n~VvLFMKGtp~~P~CGFS~~~vqiL~~~-----g~v~~~~vnVL~d~eiR~~lk~~s~WPT~PQLyi~GEf 81 (105)
T COG0278 7 RIQKQIKENPVVLFMKGTPEFPQCGFSAQAVQILSAC-----GVVDFAYVDVLQDPEIRQGLKEYSNWPTFPQLYVNGEF 81 (105)
T ss_pred HHHHHhhcCceEEEecCCCCCCCCCccHHHHHHHHHc-----CCcceeEEeeccCHHHHhccHhhcCCCCCceeeECCEE
Confidence 344444556544444444 5677777666655444 4 8899999999988876544 23455532 2248766
Q ss_pred EE
Q 032496 112 VD 113 (139)
Q Consensus 112 ~~ 113 (139)
+.
T Consensus 82 vG 83 (105)
T COG0278 82 VG 83 (105)
T ss_pred ec
Confidence 54
No 278
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=83.96 E-value=1.8 Score=26.17 Aligned_cols=31 Identities=13% Similarity=0.197 Sum_probs=23.0
Q ss_pred EEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCC
Q 032496 51 ANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVD 86 (139)
Q Consensus 51 v~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~ 86 (139)
..|+.+.|..|++....|++. ++.|..+|+-
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~~-----~i~~~~~di~ 32 (112)
T cd03034 2 TIYHNPRCSKSRNALALLEEA-----GIEPEIVEYL 32 (112)
T ss_pred EEEECCCCHHHHHHHHHHHHC-----CCCeEEEecc
Confidence 467899999999998776554 5666666664
No 279
>COG3011 Predicted thiol-disulfide oxidoreductase [General function prediction only]
Probab=83.12 E-value=9 Score=24.27 Aligned_cols=67 Identities=10% Similarity=0.149 Sum_probs=48.4
Q ss_pred CCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhhhhhCCCcce--eEEEEEeCCeEEE
Q 032496 46 GKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKAT--PTFFFLKDGQQVD 113 (139)
Q Consensus 46 ~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~--Pt~~~~~~g~~~~ 113 (139)
+++-.+.+|---|+.|......|.+.-.. ..+.|+.+.......+.+..++..- =++++.++|+...
T Consensus 6 ~~p~~vvlyDG~C~lC~~~vrfLi~~D~~-~~i~f~~~q~e~g~~~l~~~~l~~~~~~s~~~~~~g~~~~ 74 (137)
T COG3011 6 KKPDLVVLYDGVCPLCDGWVRFLIRRDQG-GRIRFAALQSEPGQALLEAAGLDPEDVDSVLLVEAGQLLV 74 (137)
T ss_pred CCCCEEEEECCcchhHHHHHHHHHHhccC-CcEEEEeccCchhhhHHhhcCCChhhhheeeEecCCceEe
Confidence 56777889999999999977766554211 2499999988888888787776533 3566668887554
No 280
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=83.07 E-value=5.8 Score=21.76 Aligned_cols=57 Identities=9% Similarity=-0.074 Sum_probs=36.0
Q ss_pred EEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCc----chhhhhhCCCcceeEEEEEeCCeEE
Q 032496 51 ANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDE----LVEFSTSWDIKATPTFFFLKDGQQV 112 (139)
Q Consensus 51 v~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~----~~~~~~~~~v~~~Pt~~~~~~g~~~ 112 (139)
..|+.+.|+.|++++-.+.+..- .+.+..++... .+++.+.-....+|++.. +|..+
T Consensus 2 ~ly~~~~s~~s~rv~~~L~e~gl---~~e~~~v~~~~~~~~~~~~~~inP~g~vP~L~~--~g~~l 62 (73)
T cd03052 2 VLYHWTQSFSSQKVRLVIAEKGL---RCEEYDVSLPLSEHNEPWFMRLNPTGEVPVLIH--GDNII 62 (73)
T ss_pred EEecCCCCccHHHHHHHHHHcCC---CCEEEEecCCcCccCCHHHHHhCcCCCCCEEEE--CCEEE
Confidence 45778889999888866655522 35556666532 234555556778999863 66543
No 281
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=81.20 E-value=9.4 Score=28.17 Aligned_cols=75 Identities=15% Similarity=0.162 Sum_probs=41.5
Q ss_pred CCChhhh-hhhHhHHHHHHhCCC----cEEEEEeCC-cc--hhhhhhCCCccee-EEEEEeCCeEEEEEeCC-ChHHHHH
Q 032496 56 TWCGPCR-MIAPFFSELSEKYPS----LMFLLVDVD-EL--VEFSTSWDIKATP-TFFFLKDGQQVDKLVGA-NKPELQK 125 (139)
Q Consensus 56 ~~C~~C~-~~~~~l~~~~~~~~~----v~~~~vd~~-~~--~~~~~~~~v~~~P-t~~~~~~g~~~~~~~g~-~~~~l~~ 125 (139)
|.|+.|. .......++.+.+.+ +++..+.|- .. +.....+|+.+-+ .+++|.+|+++.+..+. -.++|.+
T Consensus 272 PgCgR~~~D~~~la~~vee~~~~~~~PlkIAVmGC~VNgpGEa~~aDIGIaG~~~~~~vf~~Gk~v~kv~~~~~~~~l~~ 351 (360)
T PRK00366 272 PTCGRTEFDVIQELAEVEQRLEHIKMPLKVAVMGCVVNGPGEAKEADIGIAGGNPKGPVFVDGEKIKTLPEENIVEELEA 351 (360)
T ss_pred CCCCCCcccHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCCchhhCcEeEecCCCceEEEECCEEeeeeChHhHHHHHHH
Confidence 3344443 234444555555542 677776663 21 2233466776544 68888999998876543 3344444
Q ss_pred HHHHH
Q 032496 126 KVAAA 130 (139)
Q Consensus 126 ~i~~~ 130 (139)
.|+++
T Consensus 352 ~i~~~ 356 (360)
T PRK00366 352 EIEAY 356 (360)
T ss_pred HHHHH
Confidence 44443
No 282
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=78.87 E-value=4.1 Score=25.00 Aligned_cols=22 Identities=23% Similarity=0.548 Sum_probs=18.2
Q ss_pred EEEEeCCCChhhhhhhHhHHHH
Q 032496 50 IANFSATWCGPCRMIAPFFSEL 71 (139)
Q Consensus 50 lv~f~~~~C~~C~~~~~~l~~~ 71 (139)
+..|+.+.|..|+.....|++-
T Consensus 3 itiy~~p~C~t~rka~~~L~~~ 24 (117)
T COG1393 3 ITIYGNPNCSTCRKALAWLEEH 24 (117)
T ss_pred EEEEeCCCChHHHHHHHHHHHc
Confidence 5568899999999999877665
No 283
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=78.00 E-value=3.3 Score=27.11 Aligned_cols=21 Identities=19% Similarity=0.363 Sum_probs=17.0
Q ss_pred hhhhhCCCcceeEEEEEeCCe
Q 032496 90 EFSTSWDIKATPTFFFLKDGQ 110 (139)
Q Consensus 90 ~~~~~~~v~~~Pt~~~~~~g~ 110 (139)
..+.++||.++||+++..++.
T Consensus 160 ~~a~~~gv~g~Ptfvv~~~~~ 180 (193)
T cd03025 160 KLARELGINGFPTLVLEDDNG 180 (193)
T ss_pred HHHHHcCCCccCEEEEEeCCe
Confidence 346678999999999996665
No 284
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=77.66 E-value=21 Score=24.96 Aligned_cols=56 Identities=13% Similarity=0.210 Sum_probs=34.1
Q ss_pred CCEEEEEEeCC-----CChhhhhhhHhHHHHHHhCC-CcEEEEEeCCcchhhhhh----CCCccee
Q 032496 46 GKIVIANFSAT-----WCGPCRMIAPFFSELSEKYP-SLMFLLVDVDELVEFSTS----WDIKATP 101 (139)
Q Consensus 46 ~k~vlv~f~~~-----~C~~C~~~~~~l~~~~~~~~-~v~~~~vd~~~~~~~~~~----~~v~~~P 101 (139)
+.+.|..|++. .-..-......|+++...-+ ++.+-.+|.+.+++..+. ||+...+
T Consensus 25 ~pV~i~~~~s~~l~~~~~~~~~~v~~lL~~y~~~s~g~i~v~~iDp~~~~~~~~~~~~~~Gi~~~~ 90 (271)
T PF09822_consen 25 EPVTITVYFSRELPPELSPLRKQVRDLLDEYARYSPGKIKVEFIDPDENPSEAEEKAKEYGIQPVQ 90 (271)
T ss_pred CCEEEEEEECCCcchhhhHHHHHHHHHHHHHHHhCCCceEEEEECCCCChHHHHHHHHhcCCCccc
Confidence 44444444454 23444455556666666656 599999999776665554 8877633
No 285
>PRK10387 glutaredoxin 2; Provisional
Probab=76.91 E-value=19 Score=23.87 Aligned_cols=70 Identities=11% Similarity=0.121 Sum_probs=38.2
Q ss_pred EEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhhhhhCCCcceeEEEEEeCCeEEEEEeCCChHHHHHHHHHH
Q 032496 52 NFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKVAAA 130 (139)
Q Consensus 52 ~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~l~~~i~~~ 130 (139)
.++.+.|++|.+++-.++...- ++.++.++........+..+...+|+++.. +|..+. +...|...|++.
T Consensus 3 Ly~~~~sp~~~kv~~~L~~~gi---~y~~~~~~~~~~~~~~~~~p~~~VPvL~~~-~g~~l~-----eS~aI~~yL~~~ 72 (210)
T PRK10387 3 LYIYDHCPFCVKARMIFGLKNI---PVELIVLANDDEATPIRMIGQKQVPILQKD-DGSYMP-----ESLDIVHYIDEL 72 (210)
T ss_pred EEeCCCCchHHHHHHHHHHcCC---CeEEEEcCCCchhhHHHhcCCcccceEEec-CCeEec-----CHHHHHHHHHHh
Confidence 3457789999998877655521 233334444333322333345678988543 454322 445555555543
No 286
>PRK10853 putative reductase; Provisional
Probab=76.56 E-value=4.4 Score=24.87 Aligned_cols=32 Identities=6% Similarity=0.232 Sum_probs=23.8
Q ss_pred EEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCC
Q 032496 50 IANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVD 86 (139)
Q Consensus 50 lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~ 86 (139)
+..|+.+.|..|++....|++- ++.+..+|+-
T Consensus 2 i~iy~~~~C~t~rkA~~~L~~~-----~i~~~~~d~~ 33 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLEAQ-----GIDYRFHDYR 33 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHHHc-----CCCcEEeehc
Confidence 4567799999999999887654 5666666664
No 287
>PF07315 DUF1462: Protein of unknown function (DUF1462); InterPro: IPR009190 There are currently no experimental data for members of this group of bacterial proteins or their homologues. A crystal structure of Q7A6J8 from SWISSPROT revealed a thioredoxin-like fold, its core consisting of three layers alpha/beta/alpha.; PDB: 1XG8_A.
Probab=75.82 E-value=13 Score=21.67 Aligned_cols=68 Identities=19% Similarity=0.443 Sum_probs=37.8
Q ss_pred CCChhhhhh------hHhH-HHHHHhCCC--cEEEEEeCCcch------hhhhhC--CCcceeEEEEEeCCeEEEEEeCC
Q 032496 56 TWCGPCRMI------APFF-SELSEKYPS--LMFLLVDVDELV------EFSTSW--DIKATPTFFFLKDGQQVDKLVGA 118 (139)
Q Consensus 56 ~~C~~C~~~------~~~l-~~~~~~~~~--v~~~~vd~~~~~------~~~~~~--~v~~~Pt~~~~~~g~~~~~~~g~ 118 (139)
.-|..|..+ ..-| ..+.++|++ +.|-.+|+...+ +++++. .-..+|.+++ +|+++.. |.
T Consensus 7 ~~CASCVn~PsSkeTyeWL~aal~RKyp~~~f~~~YiDi~~p~~~~~~~~~a~~I~ede~fYPlV~i--~~eiV~E--Gn 82 (93)
T PF07315_consen 7 VICASCVNAPSSKETYEWLEAALKRKYPDQPFEFTYIDIENPPENDHDQQFAERILEDELFYPLVVI--NDEIVAE--GN 82 (93)
T ss_dssp S--GGGSSS--HHHHHHHHHHHHHHH-TTS-EEEEEEETTT----HHHHHHHHHHHTTSS-SSEEEE--TTEEEEE--SS
T ss_pred ccchhhcCCCCchhHHHHHHHHHhCcCCCCceEEEEEecCCCCccHHHHHHHHHHHhcccccceEEE--CCEEEec--CC
Confidence 357777654 2223 345778986 888899986432 233322 2357898888 8888776 65
Q ss_pred -ChHHHHHHH
Q 032496 119 -NKPELQKKV 127 (139)
Q Consensus 119 -~~~~l~~~i 127 (139)
....+.++|
T Consensus 83 p~LK~I~~~~ 92 (93)
T PF07315_consen 83 PQLKDIYEEM 92 (93)
T ss_dssp --HHHHHHHH
T ss_pred ccHHHHHHhh
Confidence 555555444
No 288
>PRK13730 conjugal transfer pilus assembly protein TrbC; Provisional
Probab=75.74 E-value=22 Score=24.18 Aligned_cols=34 Identities=12% Similarity=0.221 Sum_probs=24.7
Q ss_pred chhhhhhCCCcceeEEEEEeCCeEEEEEeCC-ChHH
Q 032496 88 LVEFSTSWDIKATPTFFFLKDGQQVDKLVGA-NKPE 122 (139)
Q Consensus 88 ~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~ 122 (139)
++.+.++|+|..+|++++.+.. -..+..|. +...
T Consensus 151 DP~lF~~F~I~~VPafVv~C~~-~yD~I~GNIsl~~ 185 (212)
T PRK13730 151 DPTLFSQYGIRSVPALVVFCSQ-GYDIIRGNLRVGQ 185 (212)
T ss_pred CHHHHHhcCCccccEEEEEcCC-CCCEEEecccHHH
Confidence 6788999999999999998653 23455565 5333
No 289
>PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ.
Probab=75.56 E-value=19 Score=23.40 Aligned_cols=92 Identities=20% Similarity=0.363 Sum_probs=53.8
Q ss_pred HHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHh-CCC--cE-EEEEeCCcch-------------------------
Q 032496 39 MSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEK-YPS--LM-FLLVDVDELV------------------------- 89 (139)
Q Consensus 39 ~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~-~~~--v~-~~~vd~~~~~------------------------- 89 (139)
.......+|+-+|...+-....-....|.++.+... ++. +. +-.||.|...
T Consensus 30 W~s~~l~GKVrviq~iAGr~sake~N~~l~~aik~a~f~~d~yqtttIiN~dDAi~gt~~fVrss~e~~kk~~p~s~~vl 109 (160)
T PF09695_consen 30 WNSAQLPGKVRVIQHIAGRSSAKEMNAPLIEAIKAAKFPHDKYQTTTIINLDDAIWGTGGFVRSSAEDSKKEFPWSQFVL 109 (160)
T ss_pred cCccccCCCEEEEEEeccCCchhHhhHHHHHHHHHcCCCccceeEEEEEecccccccchHHHHHHHHHhhhhCCCcEEEE
Confidence 344445688777766665555555566677777555 553 22 2234554321
Q ss_pred ----hhhhhCCCcce-eEEEEE-eCCeEEEEEeCC-ChHHHHHHHHHH
Q 032496 90 ----EFSTSWDIKAT-PTFFFL-KDGQQVDKLVGA-NKPELQKKVAAA 130 (139)
Q Consensus 90 ----~~~~~~~v~~~-Pt~~~~-~~g~~~~~~~g~-~~~~l~~~i~~~ 130 (139)
.....|++..- -+++++ ++|++.....|. +.+++...|.-+
T Consensus 110 D~~G~~~~aW~L~~~~SaiiVlDK~G~V~F~k~G~Ls~~Ev~qVi~Ll 157 (160)
T PF09695_consen 110 DSNGVVRKAWQLQEESSAIIVLDKQGKVQFVKEGALSPAEVQQVIALL 157 (160)
T ss_pred cCCCceeccccCCCCCceEEEEcCCccEEEEECCCCCHHHHHHHHHHH
Confidence 11222332211 134444 999999999999 999988876543
No 290
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=74.54 E-value=25 Score=24.11 Aligned_cols=67 Identities=15% Similarity=0.160 Sum_probs=41.7
Q ss_pred CChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhh-hhhCCCcceeEEEEEeCCeEEEEEeCCChHHHHHHHHHHhhc
Q 032496 57 WCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEF-STSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKVAAAVDS 133 (139)
Q Consensus 57 ~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~-~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~l~~~i~~~~~~ 133 (139)
.|+.|+++.-.|. .+...+.+-.||....++- .+-..-...|.+.+ ++..+ .+.+.+.++|++.+..
T Consensus 20 dcpf~qr~~m~L~---~k~~~f~vttVd~~~kp~~f~~~sp~~~~P~l~~--d~~~~-----tDs~~Ie~~Lee~l~~ 87 (221)
T KOG1422|consen 20 DCPFCQRLFMTLE---LKGVPFKVTTVDLSRKPEWFLDISPGGKPPVLKF--DEKWV-----TDSDKIEEFLEEKLPP 87 (221)
T ss_pred CChhHHHHHHHHH---HcCCCceEEEeecCCCcHHHHhhCCCCCCCeEEe--CCcee-----ccHHHHHHHHHHhcCC
Confidence 5777776665554 3433577778888866554 45556677777766 33211 1667788887776543
No 291
>KOG0868 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=74.53 E-value=2.9 Score=27.80 Aligned_cols=62 Identities=18% Similarity=0.231 Sum_probs=38.8
Q ss_pred CCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcc-h----hhhhhCCCcceeEEEEEeCCeEEE
Q 032496 45 EGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDEL-V----EFSTSWDIKATPTFFFLKDGQQVD 113 (139)
Q Consensus 45 ~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~-~----~~~~~~~v~~~Pt~~~~~~g~~~~ 113 (139)
..|+++--+|.+.|.+-.+..=.|+.+ +..+..+|.-.. . ++.+--....+|++.+ +|..+.
T Consensus 3 ~~KpiLYSYWrSSCswRVRiALaLK~i-----DYey~PvnLlk~~~q~~~ef~~iNPm~kVP~L~i--~g~tl~ 69 (217)
T KOG0868|consen 3 AAKPILYSYWRSSCSWRVRIALALKGI-----DYEYKPVNLLKEEDQSDSEFKEINPMEKVPTLVI--DGLTLT 69 (217)
T ss_pred cccchhhhhhcccchHHHHHHHHHcCC-----CcceeehhhhcchhhhhhHHhhcCchhhCCeEEE--CCEEee
Confidence 458899999999999866655444433 455555555332 2 2222223678999988 766544
No 292
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=74.38 E-value=6.8 Score=24.36 Aligned_cols=31 Identities=10% Similarity=0.053 Sum_probs=22.6
Q ss_pred EEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeC
Q 032496 50 IANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDV 85 (139)
Q Consensus 50 lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~ 85 (139)
+..|+.+.|..|++....|++- ++.|-.+|+
T Consensus 3 i~iY~~p~Cst~RKA~~~L~~~-----gi~~~~~d~ 33 (126)
T TIGR01616 3 IIFYEKPGCANNARQKAALKAS-----GHDVEVQDI 33 (126)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC-----CCCcEEEec
Confidence 4567789999999998877655 555555555
No 293
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=73.18 E-value=6.8 Score=23.45 Aligned_cols=30 Identities=17% Similarity=0.514 Sum_probs=20.4
Q ss_pred EeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCc
Q 032496 53 FSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDE 87 (139)
Q Consensus 53 f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~ 87 (139)
|+.+.|..|+.....|++- ++.+-.+|+.+
T Consensus 1 Y~~~~C~t~rka~~~L~~~-----gi~~~~~d~~k 30 (110)
T PF03960_consen 1 YGNPNCSTCRKALKWLEEN-----GIEYEFIDYKK 30 (110)
T ss_dssp EE-TT-HHHHHHHHHHHHT-----T--EEEEETTT
T ss_pred CcCCCCHHHHHHHHHHHHc-----CCCeEeehhhh
Confidence 5678999999999888653 67777788865
No 294
>PRK10026 arsenate reductase; Provisional
Probab=72.82 E-value=7.1 Score=24.85 Aligned_cols=31 Identities=13% Similarity=0.215 Sum_probs=23.0
Q ss_pred EEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeC
Q 032496 50 IANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDV 85 (139)
Q Consensus 50 lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~ 85 (139)
+..|+.+.|+.|++....|++- ++.|-.+|+
T Consensus 4 i~iY~~p~Cst~RKA~~wL~~~-----gi~~~~~d~ 34 (141)
T PRK10026 4 ITIYHNPACGTSRNTLEMIRNS-----GTEPTIIHY 34 (141)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC-----CCCcEEEee
Confidence 4567799999999999877654 555555555
No 295
>PF05176 ATP-synt_10: ATP10 protein; InterPro: IPR007849 This entry represents the ATPase assembly factor ATP10 found in mitochondria, which is essential for the assembly of the mitochondrial F1-F0 complex. A yeast nuclear gene (ATP10) encodes a product that is essential for the assembly of a functional mitochondrial ATPase complex. Mutations in ATP10 induce a loss of rutamycin sensitivity in the mitochondrial ATPase, but do not affect the respiratory enzymes. ATP10 has an Mr of 30,293 and its primary structure is not related to any known subunit of the yeast or mammalian mitochondrial ATPase complexes. ATP10 is associated with the mitochondrial membrane. It is suggested that the ATP10 product is not a subunit of the ATPase complex but rather a protein required for the assembly of the F0 sector of the complex [].; GO: 0033615 mitochondrial proton-transporting ATP synthase complex assembly, 0005743 mitochondrial inner membrane
Probab=71.52 E-value=32 Score=24.16 Aligned_cols=84 Identities=13% Similarity=0.213 Sum_probs=49.4
Q ss_pred CCCEEEEEEe-CCCChhhhh-h-hHhHHHHHHhC-CCcEEEEEeCCcc--------------------------------
Q 032496 45 EGKIVIANFS-ATWCGPCRM-I-APFFSELSEKY-PSLMFLLVDVDEL-------------------------------- 88 (139)
Q Consensus 45 ~~k~vlv~f~-~~~C~~C~~-~-~~~l~~~~~~~-~~v~~~~vd~~~~-------------------------------- 88 (139)
.+++.||.++ +.|-..|.. + .|...++...- ..++++.|+..++
T Consensus 121 ~gkvSlV~l~s~~~ge~~~~sw~~p~~~~~~~~~~~~~q~v~In~~e~~~k~~l~~~~~~~lrk~ip~~~h~~Yf~~~~~ 200 (252)
T PF05176_consen 121 RGKVSLVCLFSSAWGEEMVDSWTSPFLEDFLQEPYGRVQIVEINLIENWLKSWLVKLFMGSLRKSIPEERHDRYFIVYRG 200 (252)
T ss_pred CCceEEEEEeehHHHHHHHHHHhhHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHHhhhhhccCCHHHCceEEEEeCC
Confidence 4666665555 444433332 1 23444443332 2588888888542
Q ss_pred ---hhhhhhCCCccee---EEEEEeCCeEEEEEeCC-ChHHHHHHHH
Q 032496 89 ---VEFSTSWDIKATP---TFFFLKDGQQVDKLVGA-NKPELQKKVA 128 (139)
Q Consensus 89 ---~~~~~~~~v~~~P---t~~~~~~g~~~~~~~g~-~~~~l~~~i~ 128 (139)
..+.+.+++...- .++++.+|++.+.-.|. +.++++....
T Consensus 201 ~~~~~iRe~Lgi~N~~~GYvyLVD~~grIRWagsG~At~~E~~~L~k 247 (252)
T PF05176_consen 201 QLSDDIREALGINNSYVGYVYLVDPNGRIRWAGSGPATPEELESLWK 247 (252)
T ss_pred cccHHHHHHhCCCCCCcCeEEEECCCCeEEeCccCCCCHHHHHHHHH
Confidence 2345556665444 35555899999998888 8888776543
No 296
>KOG1364 consensus Predicted ubiquitin regulatory protein, contains UAS and UBX domains [Posttranslational modification, protein turnover, chaperones]
Probab=70.91 E-value=6.9 Score=28.68 Aligned_cols=59 Identities=20% Similarity=0.356 Sum_probs=45.2
Q ss_pred cEEEEEeCCcchhhhhhCCCcceeEEEEE--eCCeEEEEEeCC-ChHHHHHHHHHHhhccCC
Q 032496 78 LMFLLVDVDELVEFSTSWDIKATPTFFFL--KDGQQVDKLVGA-NKPELQKKVAAAVDSVVP 136 (139)
Q Consensus 78 v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~--~~g~~~~~~~g~-~~~~l~~~i~~~~~~~~~ 136 (139)
.-.+..|..+...+..-|.+..+|.+.++ .-|+.+.++.|. .++.|...++++++.-++
T Consensus 133 wllV~~Dtseg~~~~~Fy~~~~~P~i~iiDp~Tge~v~~ws~vi~~~~fl~~l~~Fi~~~~~ 194 (356)
T KOG1364|consen 133 WLLVLDDTSEGQPFSAFYHISSLPHIAIIDPITGERVKRWSGVIEPEQFLSDLNEFIDSCPH 194 (356)
T ss_pred EEEEeeccCCCCchhhheeccCCceEEEECCchhhhhhhhccccCHHHHHHHHHHHHhcCCc
Confidence 33445566666778888899999987777 578888899888 888888888888876554
No 297
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=70.26 E-value=9.2 Score=24.93 Aligned_cols=32 Identities=3% Similarity=-0.036 Sum_probs=25.0
Q ss_pred EEeCCCChhhhhhhHhHHHHHHhCC-CcEEEEE
Q 032496 52 NFSATWCGPCRMIAPFFSELSEKYP-SLMFLLV 83 (139)
Q Consensus 52 ~f~~~~C~~C~~~~~~l~~~~~~~~-~v~~~~v 83 (139)
+|+..-||+|-...+.|+++...++ .+.+..+
T Consensus 3 ~~~D~~cP~cy~~~~~l~~~~~~~~~~i~~~p~ 35 (192)
T cd03022 3 FYFDFSSPYSYLAHERLPALAARHGATVRYRPI 35 (192)
T ss_pred EEEeCCChHHHHHHHHHHHHHHHhCCeeEEeee
Confidence 5678899999999999999998885 2444333
No 298
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=70.08 E-value=15 Score=19.74 Aligned_cols=57 Identities=7% Similarity=0.177 Sum_probs=32.0
Q ss_pred CCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhhhhhCCCcceeEEEEEeCCeEEEEEeCCChHHHHHHHH
Q 032496 56 TWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKVA 128 (139)
Q Consensus 56 ~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~l~~~i~ 128 (139)
++|++|.+.+-.++.. ++.|-.++.+... .-....+|++.. +|+.+. ....+.++|.
T Consensus 14 s~sp~~~~v~~~L~~~-----~i~~~~~~~~~~~----~~p~g~vP~l~~--~g~~l~-----es~~I~~yL~ 70 (72)
T cd03054 14 SLSPECLKVETYLRMA-----GIPYEVVFSSNPW----RSPTGKLPFLEL--NGEKIA-----DSEKIIEYLK 70 (72)
T ss_pred CCCHHHHHHHHHHHhC-----CCceEEEecCCcc----cCCCcccCEEEE--CCEEEc-----CHHHHHHHHh
Confidence 5899999998877653 5444444443211 112447898865 454332 3345555443
No 299
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=68.88 E-value=11 Score=24.86 Aligned_cols=25 Identities=12% Similarity=0.107 Sum_probs=22.4
Q ss_pred EEeCCCChhhhhhhHhHHHHHHhCC
Q 032496 52 NFSATWCGPCRMIAPFFSELSEKYP 76 (139)
Q Consensus 52 ~f~~~~C~~C~~~~~~l~~~~~~~~ 76 (139)
+|+..-||+|....+.|.++.+.++
T Consensus 3 ~~~D~~cP~cyl~~~~l~~~~~~~~ 27 (201)
T cd03024 3 IWSDVVCPWCYIGKRRLEKALAELG 27 (201)
T ss_pred EEecCcCccHHHHHHHHHHHHHhCC
Confidence 5678899999999999999999984
No 300
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=68.62 E-value=17 Score=19.67 Aligned_cols=69 Identities=12% Similarity=0.087 Sum_probs=40.8
Q ss_pred EEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCC----cchhhhhhCCCcceeEEEEEeCCeEEEEEeCCChHHHHH
Q 032496 50 IANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVD----ELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQK 125 (139)
Q Consensus 50 lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~----~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~l~~ 125 (139)
+..|+.+.|++|++.+-.+....- .+.+..++.. ..+++.+......+|++.. +|..+. ....+.+
T Consensus 2 ~~Ly~~~~s~~s~~v~~~l~~~~i---~~~~~~~~~~~~~~~~~~~~~~~P~~~vP~l~~--~g~~l~-----es~aI~~ 71 (76)
T cd03053 2 LKLYGAAMSTCVRRVLLCLEEKGV---DYELVPVDLTKGEHKSPEHLARNPFGQIPALED--GDLKLF-----ESRAITR 71 (76)
T ss_pred eEEEeCCCChhHHHHHHHHHHcCC---CcEEEEeCccccccCCHHHHhhCCCCCCCEEEE--CCEEEE-----cHHHHHH
Confidence 445667789999998887766522 2444455543 1245555666788998753 454322 4445555
Q ss_pred HHH
Q 032496 126 KVA 128 (139)
Q Consensus 126 ~i~ 128 (139)
+|.
T Consensus 72 yL~ 74 (76)
T cd03053 72 YLA 74 (76)
T ss_pred HHh
Confidence 543
No 301
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=67.58 E-value=22 Score=20.72 Aligned_cols=65 Identities=9% Similarity=0.133 Sum_probs=40.1
Q ss_pred CCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcc-hhhhhhCCCcceeEEEEEeCCeEEEEEeCCChHHHHHHHHHH
Q 032496 56 TWCGPCRMIAPFFSELSEKYPSLMFLLVDVDEL-VEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKVAAA 130 (139)
Q Consensus 56 ~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~-~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~l~~~i~~~ 130 (139)
.+|++|++++=.|.+. --.+.+..+|.... .++.+......+|+++- +|..+. +...|.+.|++.
T Consensus 20 g~cpf~~rvrl~L~eK---gi~ye~~~vd~~~~p~~~~~~nP~g~vPvL~~--~~~~i~-----eS~~I~eYLde~ 85 (91)
T cd03061 20 GNCPFCQRLFMVLWLK---GVVFNVTTVDMKRKPEDLKDLAPGTQPPFLLY--NGEVKT-----DNNKIEEFLEET 85 (91)
T ss_pred CCChhHHHHHHHHHHC---CCceEEEEeCCCCCCHHHHHhCCCCCCCEEEE--CCEEec-----CHHHHHHHHHHH
Confidence 5799999988777554 11245566665553 34555555778996653 554332 566677777665
No 302
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=67.42 E-value=8.8 Score=25.78 Aligned_cols=34 Identities=12% Similarity=0.246 Sum_probs=20.7
Q ss_pred hhhCCCcceeEEEEEeC-CeEEEEEeCC-ChHHHHHH
Q 032496 92 STSWDIKATPTFFFLKD-GQQVDKLVGA-NKPELQKK 126 (139)
Q Consensus 92 ~~~~~v~~~Pt~~~~~~-g~~~~~~~g~-~~~~l~~~ 126 (139)
+.+.||.++|++++-.+ |+ ...+.|. ..+.+.+.
T Consensus 172 A~~~Gv~GVP~fvv~~~~~~-~e~fwG~Drl~~~~~~ 207 (209)
T cd03021 172 ALKYGAFGLPWIVVTNDKGK-TEMFFGSDRFEQVADF 207 (209)
T ss_pred HHHcCCCCCCEEEEEcCCCC-ccceecCCcHHHHHHH
Confidence 45679999999999643 32 2245566 34444433
No 303
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=67.16 E-value=33 Score=25.27 Aligned_cols=75 Identities=11% Similarity=0.157 Sum_probs=41.1
Q ss_pred EeCCCChhhhh-hhHhHHHHHHhCC----CcEEEEEeCCcc---hhhhhhCCCcce--eEEEEEeCCeEEEEEeCCChHH
Q 032496 53 FSATWCGPCRM-IAPFFSELSEKYP----SLMFLLVDVDEL---VEFSTSWDIKAT--PTFFFLKDGQQVDKLVGANKPE 122 (139)
Q Consensus 53 f~~~~C~~C~~-~~~~l~~~~~~~~----~v~~~~vd~~~~---~~~~~~~~v~~~--Pt~~~~~~g~~~~~~~g~~~~~ 122 (139)
..=|.|+.|.. +....+++.+.+. .+++..+.|--| +.-...+||.+- -..++|++|+++.+. ..++
T Consensus 260 iSCPtCGR~~~dl~~~~~~ve~~l~~~~~~l~VAVMGCvVNGPGEak~ADiGIaggg~g~~~lF~~G~~~~kv---~~~~ 336 (346)
T TIGR00612 260 VACPSCGRTGFDVEKVVRRVQEALFHLKTPLKVAVMGCVVNGPGEAKHADIGISGGGTGSAILFKRGKPKAKQ---PETD 336 (346)
T ss_pred EECCCCCCcCCCHHHHHHHHHHHHhcCCCCCEEEEECceecCCchhhccCeeeecCCCCceEEEECCEEeEec---CHHH
Confidence 34566666652 3444455544432 377777766422 112235676643 357888999987764 4445
Q ss_pred HHHHHHHH
Q 032496 123 LQKKVAAA 130 (139)
Q Consensus 123 l~~~i~~~ 130 (139)
+.+.+.+.
T Consensus 337 ~~~~l~~~ 344 (346)
T TIGR00612 337 MADELIRL 344 (346)
T ss_pred HHHHHHHh
Confidence 55544443
No 304
>KOG2244 consensus Highly conserved protein containing a thioredoxin domain [General function prediction only]
Probab=66.50 E-value=6.6 Score=30.80 Aligned_cols=74 Identities=20% Similarity=0.217 Sum_probs=45.8
Q ss_pred HHHHHhhCCCEEEEEEeCCCChhhhhhhHhH---HHHHHhCC-CcEEEEEeCCcchhhhh--------hCCCcceeEEEE
Q 032496 38 KMSEASKEGKIVIANFSATWCGPCRMIAPFF---SELSEKYP-SLMFLLVDVDELVEFST--------SWDIKATPTFFF 105 (139)
Q Consensus 38 ~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l---~~~~~~~~-~v~~~~vd~~~~~~~~~--------~~~v~~~Pt~~~ 105 (139)
....+..++||+++-+.-..|.+|..|...- ++..+... ++.-+.||.++.+++-+ .+|-.++|.-++
T Consensus 104 af~kar~enkpifLsvgystchwchvmekesfeneet~~ilnenfv~ikVDREERPDVDK~YM~Fv~assg~GGWPmsV~ 183 (786)
T KOG2244|consen 104 AFNKARAENKPIFLSVGYSTCHWCHVMEKESFENEETGEILNENFVKIKVDREERPDVDKLYMAFVVASSGGGGWPMSVF 183 (786)
T ss_pred HHHHHHhcCCCEEEEcccccchheeeeecccccCHHHHHHHhhhhhhhccChhhcCchHHHHHHHHHhccCCCCCceeEE
Confidence 3445557899999999999999999886422 22222221 34444556666666533 346668887666
Q ss_pred E-eCCeE
Q 032496 106 L-KDGQQ 111 (139)
Q Consensus 106 ~-~~g~~ 111 (139)
+ .+=++
T Consensus 184 LTPdL~P 190 (786)
T KOG2244|consen 184 LTPDLKP 190 (786)
T ss_pred eCCCccc
Confidence 6 54333
No 305
>PF06491 Disulph_isomer: Disulphide isomerase; InterPro: IPR009474 This entry consists of several hypothetical bacterial proteins of unknown function.; PDB: 3FHK_F.
Probab=66.25 E-value=30 Score=21.78 Aligned_cols=107 Identities=17% Similarity=0.246 Sum_probs=57.8
Q ss_pred cCCCceEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhh--hhhHhHHHHHHh-CCCcEEEEEeCCcchhh---hhh
Q 032496 21 FAGGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCR--MIAPFFSELSEK-YPSLMFLLVDVDELVEF---STS 94 (139)
Q Consensus 21 ~~~~~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~--~~~~~l~~~~~~-~~~v~~~~vd~~~~~~~---~~~ 94 (139)
+...-+.++.+.++.+..+. .+...+||.+ .+-|+ |. ..+|........ ..--+++.|=...+.+. ++.
T Consensus 13 Lt~~Gf~eL~T~e~Vd~~~~---~~~GTtlVvV-NSVCG-CAag~ARPa~~~al~~~kkPD~lvTVFAGqDkEAt~~aR~ 87 (136)
T PF06491_consen 13 LTRAGFEELTTAEEVDEALK---NKEGTTLVVV-NSVCG-CAAGNARPAAAMALQNDKKPDHLVTVFAGQDKEATAKARE 87 (136)
T ss_dssp HHTTT-EE--SHHHHHHHHH---H--SEEEEEE-E-SSH-HHHHTHHHHHHHHHHHSS--SEEEEEETTTSHHHHHHHHH
T ss_pred HHHcCccccCCHHHHHHHHh---CCCCcEEEEE-ecccc-ccccccCHHHHHHHhCCCCCCceEEeccCCCHHHHHHHHH
Confidence 33445678888888888885 2345666644 45576 33 456655444332 22245555555444332 233
Q ss_pred CC---CcceeEEEEEeCCeEEEEEe-----CCChHHHHHHHHHHhh
Q 032496 95 WD---IKATPTFFFLKDGQQVDKLV-----GANKPELQKKVAAAVD 132 (139)
Q Consensus 95 ~~---v~~~Pt~~~~~~g~~~~~~~-----g~~~~~l~~~i~~~~~ 132 (139)
|= -.+-|++.+|++|++++.+. |.+.+.|..-|....+
T Consensus 88 yf~~~pPSSPS~ALfKdGelvh~ieRh~IEGr~a~~Ia~~L~~af~ 133 (136)
T PF06491_consen 88 YFEPYPPSSPSIALFKDGELVHFIERHHIEGRPAEEIAENLQDAFD 133 (136)
T ss_dssp TSTTS---SSEEEEEETTEEEEEE-GGGTTTS-HHHHHHHHHHHHH
T ss_pred hcCCCCCCCchheeeeCCEEEEEeehhhcCCCCHHHHHHHHHHHHH
Confidence 32 24678999999999998653 5577777777766654
No 306
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=65.16 E-value=55 Score=24.38 Aligned_cols=88 Identities=14% Similarity=0.179 Sum_probs=57.7
Q ss_pred CCEEEEEEeCCCChhhhhhhHhHHHHHHhCC---CcEEEEEeCCcchhhh----hhCCCc-ceeEEEEE--eCCeEEEEE
Q 032496 46 GKIVIANFSATWCGPCRMIAPFFSELSEKYP---SLMFLLVDVDELVEFS----TSWDIK-ATPTFFFL--KDGQQVDKL 115 (139)
Q Consensus 46 ~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~---~v~~~~vd~~~~~~~~----~~~~v~-~~Pt~~~~--~~g~~~~~~ 115 (139)
+...+|.|--...+.-..+...|+++++... +..++.||.|.-+-+. +.|+|. .-|.+-++ .+..-++.-
T Consensus 268 ~g~hIvaFaee~dpdG~efleilk~va~~nt~np~LsivwIDPD~fPllv~yWE~tF~Idl~~PqIGvVnvtdadsvW~d 347 (383)
T PF01216_consen 268 DGIHIVAFAEEEDPDGFEFLEILKQVARDNTDNPDLSIVWIDPDDFPLLVPYWEKTFGIDLSRPQIGVVNVTDADSVWMD 347 (383)
T ss_dssp SSEEEEEE--TTSHHHHHHHHHHHHHHHHCTT-TT--EEEE-GGG-HHHHHHHHHHHTT-TTS-EEEEEETTTSEEEEC-
T ss_pred CCceEEEEecCCCCchHHHHHHHHHHHHhcCcCCceeEEEECCCCCchhHHHHHhhcCccccCCceeEEeccccccchhc
Confidence 5677888999999999999999999999874 5999999999877653 456653 34877666 444444332
Q ss_pred eC----C-ChHHHHHHHHHHhhc
Q 032496 116 VG----A-NKPELQKKVAAAVDS 133 (139)
Q Consensus 116 ~g----~-~~~~l~~~i~~~~~~ 133 (139)
.. . +.++|++||+..+..
T Consensus 348 m~d~~d~pt~~~LedWieDVlsg 370 (383)
T PF01216_consen 348 MDDDDDLPTAEELEDWIEDVLSG 370 (383)
T ss_dssp STTTSS---HHHHHHHHHHHHCT
T ss_pred cCCcccCCcHHHHHHHHHHHhcC
Confidence 21 1 788999999998754
No 307
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=65.07 E-value=39 Score=22.57 Aligned_cols=59 Identities=17% Similarity=0.084 Sum_probs=37.1
Q ss_pred EEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcc-hhhhhhCCCcceeEEEEEeCCeE
Q 032496 48 IVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDEL-VEFSTSWDIKATPTFFFLKDGQQ 111 (139)
Q Consensus 48 ~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~-~~~~~~~~v~~~Pt~~~~~~g~~ 111 (139)
..+-.|+.+.|+.|.+.+-.|.+..- ++.+..+|.... +++.+......+|++.. +|..
T Consensus 9 ~~~~Ly~~~~s~~~~rv~~~L~e~gl---~~e~~~v~~~~~~~~~~~~nP~g~VPvL~~--~g~~ 68 (211)
T PRK09481 9 SVMTLFSGPTDIYSHQVRIVLAEKGV---SVEIEQVEKDNLPQDLIDLNPYQSVPTLVD--RELT 68 (211)
T ss_pred CeeEEeCCCCChhHHHHHHHHHHCCC---CCEEEeCCcccCCHHHHHhCCCCCCCEEEE--CCEE
Confidence 34555667889999999877765421 355556665433 34545445678999863 5543
No 308
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=63.78 E-value=21 Score=19.12 Aligned_cols=58 Identities=12% Similarity=0.049 Sum_probs=33.9
Q ss_pred EEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCc-chhhhhhCCCcceeEEEEEeCCeE
Q 032496 52 NFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDE-LVEFSTSWDIKATPTFFFLKDGQQ 111 (139)
Q Consensus 52 ~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~-~~~~~~~~~v~~~Pt~~~~~~g~~ 111 (139)
.|+.+.|++|.+.+-.+....... .+..+.+|... .+++.+......+|++.. .+|..
T Consensus 3 Ly~~~~s~~~~~~~~~l~~~~~~i-~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~-~~g~~ 61 (73)
T cd03049 3 LLYSPTSPYVRKVRVAAHETGLGD-DVELVLVNPWSDDESLLAVNPLGKIPALVL-DDGEA 61 (73)
T ss_pred EecCCCCcHHHHHHHHHHHhCCCC-CcEEEEcCcccCChHHHHhCCCCCCCEEEE-CCCCE
Confidence 467888999998887765521111 24455555332 344445556778997764 34543
No 309
>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B ....
Probab=63.50 E-value=22 Score=19.16 Aligned_cols=64 Identities=13% Similarity=0.144 Sum_probs=37.2
Q ss_pred CChhhhhhhHhHHHHHHhCCCcEEEEEeC-----CcchhhhhhCCCcceeEEEEEeCCeEEEEEeCCChHHHHHHHHH
Q 032496 57 WCGPCRMIAPFFSELSEKYPSLMFLLVDV-----DELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKVAA 129 (139)
Q Consensus 57 ~C~~C~~~~~~l~~~~~~~~~v~~~~vd~-----~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~l~~~i~~ 129 (139)
.||+|++..=.++...-.+ .+.+ ++. ...+++.+.-+...+|++.. .+|+++. +...|.+.|++
T Consensus 1 ~sP~a~Rv~i~l~~~gl~~-~~~~--v~~~~~~~~~~~~~~~~~p~~~VP~L~~-~~g~vi~-----eS~~I~~yL~~ 69 (70)
T PF13409_consen 1 FSPFAHRVRIALEEKGLPY-EIKV--VPLIPKGEQKPPEFLALNPRGKVPVLVD-PDGTVIN-----ESLAILEYLEE 69 (70)
T ss_dssp T-HHHHHHHHHHHHHTGTC-EEEE--EETTTTBCTTCHBHHHHSTT-SSSEEEE-TTTEEEE-----SHHHHHHHHHH
T ss_pred CchHhHHHHHHHHHhCCCC-EEEE--EeeecCccccChhhhccCcCeEEEEEEE-CCCCEee-----CHHHHHHHHhc
Confidence 5999999988887774333 2333 322 12245655556778999887 4676333 55666666553
No 310
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=63.23 E-value=43 Score=22.43 Aligned_cols=53 Identities=15% Similarity=0.124 Sum_probs=29.8
Q ss_pred EeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeC--CcchhhhhhCCCcceeEEEEEeCCeE
Q 032496 53 FSATWCGPCRMIAPFFSELSEKYPSLMFLLVDV--DELVEFSTSWDIKATPTFFFLKDGQQ 111 (139)
Q Consensus 53 f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~--~~~~~~~~~~~v~~~Pt~~~~~~g~~ 111 (139)
++...|++|++++-.+... ++.+-.++. +......+......+|++.. .+|..
T Consensus 3 y~~~~sp~~~kvr~~L~~~-----gl~~e~~~~~~~~~~~~~~~np~g~vP~l~~-~~g~~ 57 (209)
T TIGR02182 3 YIYDHCPFCVRARMIFGLK-----NIPVEKHVLLNDDEETPIRMIGAKQVPILQK-DDGRA 57 (209)
T ss_pred ecCCCCChHHHHHHHHHHc-----CCCeEEEECCCCcchhHHHhcCCCCcceEEe-eCCeE
Confidence 4567799999888776555 333333333 33323333334567897754 35543
No 311
>PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like.
Probab=62.79 E-value=47 Score=22.76 Aligned_cols=74 Identities=14% Similarity=0.298 Sum_probs=44.0
Q ss_pred CCCEEEEEEe-----CCCChhhhhhhHhHHHHHHhC--CCcEEEEEeCCcch---------------------hhhhhCC
Q 032496 45 EGKIVIANFS-----ATWCGPCRMIAPFFSELSEKY--PSLMFLLVDVDELV---------------------EFSTSWD 96 (139)
Q Consensus 45 ~~k~vlv~f~-----~~~C~~C~~~~~~l~~~~~~~--~~v~~~~vd~~~~~---------------------~~~~~~~ 96 (139)
..+.+|.+|. ...|+.|..+...+......+ .++.|+.|....-. ++...|+
T Consensus 67 r~qLivyhfM~~p~~~~~C~gCs~~~D~~~g~l~hL~~rd~tfa~vSraP~~~i~afk~rmGW~~pw~Ss~gs~Fn~D~~ 146 (211)
T PF05988_consen 67 RRQLIVYHFMFGPDWDEGCPGCSFWADHIDGALRHLHARDTTFAVVSRAPLEKIEAFKRRMGWTFPWYSSYGSDFNYDFG 146 (211)
T ss_pred CceEEEEeeccCCCCCCCCCchhhhHhhhhhhHHHHHhCCceEEEEeCCCHHHHHHHHHhcCCCceEEEcCCCccccccc
Confidence 3445555555 468999999998883333332 25888888765322 2233455
Q ss_pred C-----cceeEEEEE-e-CCeEEEEEeCC
Q 032496 97 I-----KATPTFFFL-K-DGQQVDKLVGA 118 (139)
Q Consensus 97 v-----~~~Pt~~~~-~-~g~~~~~~~g~ 118 (139)
+ ...|.+-+| + +|++...+...
T Consensus 147 ~~~~~~~~~~g~svF~Rdg~~VfhTyst~ 175 (211)
T PF05988_consen 147 VSFDEGGEMPGLSVFLRDGGRVFHTYSTY 175 (211)
T ss_pred ceeccCCCceeEEEEEEcCCEEEEEeecC
Confidence 5 466766666 4 45665655544
No 312
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=61.70 E-value=24 Score=19.01 Aligned_cols=68 Identities=9% Similarity=0.029 Sum_probs=38.8
Q ss_pred EEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcc-hhhhhhCCC-cceeEEEEEeCCeEEEEEeCCChHHHHHHHHH
Q 032496 52 NFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDEL-VEFSTSWDI-KATPTFFFLKDGQQVDKLVGANKPELQKKVAA 129 (139)
Q Consensus 52 ~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~-~~~~~~~~v-~~~Pt~~~~~~g~~~~~~~g~~~~~l~~~i~~ 129 (139)
.++.+.|++|.+.+-.+....- .+....++.... +++.+.... ..+|++.. +|..+. ....+.+.|++
T Consensus 3 Ly~~~~sp~~~~v~~~l~~~gl---~~~~~~~~~~~~~~~~~~~~p~~~~vP~l~~--~~~~l~-----eS~aI~~yL~~ 72 (74)
T cd03058 3 LLGAWASPFVLRVRIALALKGV---PYEYVEEDLGNKSELLLASNPVHKKIPVLLH--NGKPIC-----ESLIIVEYIDE 72 (74)
T ss_pred EEECCCCchHHHHHHHHHHcCC---CCEEEEeCcccCCHHHHHhCCCCCCCCEEEE--CCEEee-----hHHHHHHHHHh
Confidence 4567889999998887766522 244444554322 333333333 68998864 454322 44556665543
No 313
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=61.55 E-value=53 Score=24.27 Aligned_cols=78 Identities=14% Similarity=0.158 Sum_probs=48.8
Q ss_pred Chhhhh----hhHhHHHHHHhCC----CcEEEEEeCCcc---hhhhhhCCCcc--eeEEEEEeCCeEEEEEeCC-ChHHH
Q 032496 58 CGPCRM----IAPFFSELSEKYP----SLMFLLVDVDEL---VEFSTSWDIKA--TPTFFFLKDGQQVDKLVGA-NKPEL 123 (139)
Q Consensus 58 C~~C~~----~~~~l~~~~~~~~----~v~~~~vd~~~~---~~~~~~~~v~~--~Pt~~~~~~g~~~~~~~g~-~~~~l 123 (139)
||.|-+ +...++++.+.+. .+++..+.|--| +.....+|+.+ .|...+|.+|+++.+..+. -.++|
T Consensus 264 CP~CGR~~~dv~~~~~~~~~~~~~~~~pl~VAVMGCVVNGPGEak~AdiGia~~~~~~~~~f~~g~~~~~~~~~~~~eel 343 (361)
T COG0821 264 CPTCGRTEFDVIQTLNEVEQRLEHLKTPLKVAVMGCVVNGPGEAKHADIGIAGGGKGSGPVFVKGEIIKKLPEEDIVEEL 343 (361)
T ss_pred CCCCCceeehHHHHHHHHHHHhhccCCCceEEEEEeEecCCcchhccceeeecCCCCeeEEEECCeEEEecChhhHHHHH
Confidence 666654 3455556655553 256655555321 12223456543 6889999999999997777 57788
Q ss_pred HHHHHHHhhccC
Q 032496 124 QKKVAAAVDSVV 135 (139)
Q Consensus 124 ~~~i~~~~~~~~ 135 (139)
...+++.....-
T Consensus 344 ~~~i~~~~~~~~ 355 (361)
T COG0821 344 EALIEAYAEERD 355 (361)
T ss_pred HHHHHHHHHHhh
Confidence 888877765543
No 314
>COG5494 Predicted thioredoxin/glutaredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=61.43 E-value=51 Score=22.73 Aligned_cols=72 Identities=14% Similarity=0.266 Sum_probs=45.0
Q ss_pred EEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhhhhhCCCcceeEEEEEeCCeEEEEEeCC-ChHHHHHHHH
Q 032496 50 IANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGA-NKPELQKKVA 128 (139)
Q Consensus 50 lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~i~ 128 (139)
+=.|....|..|......++.- -..++|+|+ +...-+..+-+-+|.++|.+++ +|+.+.. +. ++++++..+.
T Consensus 13 VkI~~HktC~ssy~Lf~~L~nk-gll~~Vkii--~a~~p~f~~~~~~V~SvP~Vf~--DGel~~~--dpVdp~~ies~~~ 85 (265)
T COG5494 13 VKIFTHKTCVSSYMLFEYLENK-GLLGKVKII--DAELPPFLAFEKGVISVPSVFI--DGELVYA--DPVDPEEIESILS 85 (265)
T ss_pred EEEEEecchHHHHHHHHHHHhc-CCCCCceEE--EcCCChHHHhhcceeecceEEE--cCeEEEc--CCCCHHHHHHHHc
Confidence 3445677888888776665431 013457755 4444445455557999999877 8876543 55 7777766554
No 315
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=61.06 E-value=15 Score=22.36 Aligned_cols=51 Identities=14% Similarity=0.245 Sum_probs=33.7
Q ss_pred CChhhhhhhHhHHHHHHhCCCcEEEEEeCCcch-hhhhhCC--CcceeEEEEEe
Q 032496 57 WCGPCRMIAPFFSELSEKYPSLMFLLVDVDELV-EFSTSWD--IKATPTFFFLK 107 (139)
Q Consensus 57 ~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~-~~~~~~~--v~~~Pt~~~~~ 107 (139)
.|++|..+...|...-..-..+.+.+|+...-+ ++....| -++.|++++-.
T Consensus 23 ~Cp~c~~iEGlLa~~P~l~~~ldV~rV~f~RPR~~vi~llGE~~QslPvLVL~~ 76 (112)
T PF11287_consen 23 YCPHCAAIEGLLASFPDLRERLDVRRVDFPRPRQAVIALLGEANQSLPVLVLAD 76 (112)
T ss_pred ECCchHHHHhHHhhChhhhhcccEEEeCCCCchHHHHHHhChhccCCCEEEeCC
Confidence 499998887776544333334778888887543 3444444 46899988854
No 316
>PF00352 TBP: Transcription factor TFIID (or TATA-binding protein, TBP); InterPro: IPR000814 The TATA-box binding protein (TBP) is required for the initiation of transcription by RNA polymerases I, II and III, from promoters with or without a TATA box [, ]. TBP associates with a host of factors, including the general transcription factors TFIIA, -B, -D, -E, and -H, to form huge multi-subunit pre-initiation complexes on the core promoter. Through its association with different transcription factors, TBP can initiate transcription from different RNA polymerases. There are several related TBPs, including TBP-like (TBPL) proteins []. The C-terminal core of TBP (~180 residues) is highly conserved and contains two 77-amino acid repeats that produce a saddle-shaped structure that straddles the DNA; this region binds to the TATA box and interacts with transcription factors and regulatory proteins []. By contrast, the N-terminal region varies in both length and sequence.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0006367 transcription initiation from RNA polymerase II promoter; PDB: 1D3U_A 1PCZ_B 1AIS_A 1NGM_A 1TBP_A 1TBA_B 1YTB_A 1RM1_A 1YTF_A 1NH2_A ....
Probab=61.00 E-value=23 Score=20.24 Aligned_cols=60 Identities=17% Similarity=0.257 Sum_probs=35.2
Q ss_pred hHHHHHHhCCCcEEEEEeCCcchhhhhhCCCcceeEEEEEeCCeEEEEEeCC-ChHHHHHHHHHHhh
Q 032496 67 FFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGA-NKPELQKKVAAAVD 132 (139)
Q Consensus 67 ~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~i~~~~~ 132 (139)
.|.+++..+.++ ..+.+..+.+.-++. ..-.++.+|..|+++-. |. +.+++...++.++.
T Consensus 20 dL~~la~~~~~~---~YePe~fpgl~~r~~-~p~~t~~IF~sGki~it--Gaks~~~~~~a~~~i~~ 80 (86)
T PF00352_consen 20 DLEELAEELENV---EYEPERFPGLIYRLR-NPKATVLIFSSGKIVIT--GAKSEEEAKKAIEKILP 80 (86)
T ss_dssp -HHHHHHHSTTE---EEETTTESSEEEEET-TTTEEEEEETTSEEEEE--EESSHHHHHHHHHHHHH
T ss_pred CHHHHHhhccCc---EEeeccCCeEEEeec-CCcEEEEEEcCCEEEEE--ecCCHHHHHHHHHHHHH
Confidence 445555555433 334444444332222 12468899999998766 66 77777777766654
No 317
>PF14424 Toxin-deaminase: The BURPS668_1122 family of deaminases
Probab=59.96 E-value=41 Score=21.15 Aligned_cols=33 Identities=12% Similarity=0.288 Sum_probs=22.3
Q ss_pred EEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEe
Q 032496 49 VIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVD 84 (139)
Q Consensus 49 vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd 84 (139)
+-++--.+-|..|.. .++++..+||++.+..++
T Consensus 99 i~l~te~~pC~SC~~---vi~qF~~~~pni~~~v~~ 131 (133)
T PF14424_consen 99 IDLFTELPPCESCSN---VIEQFKKDFPNIKVNVVY 131 (133)
T ss_pred EEEEecCCcChhHHH---HHHHHHHHCCCcEEEEec
Confidence 333334678888886 566667889987766543
No 318
>PF08806 Sep15_SelM: Sep15/SelM redox domain; InterPro: IPR014912 Sep15 and SelM are eukaryotic selenoproteins that have a thioredoxin-like domain and a surface accessible active site redox motif []. This suggests that they function as thiol-disulphide isomerases involved in disulphide bond formation in the endoplasmic reticulum []. ; PDB: 2A4H_A 2A2P_A.
Probab=59.71 E-value=20 Score=20.29 Aligned_cols=32 Identities=22% Similarity=0.480 Sum_probs=20.6
Q ss_pred ceeEEEEE-eCCeEEEEEe--CCChHHHHHHHHHH
Q 032496 99 ATPTFFFL-KDGQQVDKLV--GANKPELQKKVAAA 130 (139)
Q Consensus 99 ~~Pt~~~~-~~g~~~~~~~--g~~~~~l~~~i~~~ 130 (139)
.-|+++++ .+|+.+.+.. +.+.+++.++|.+.
T Consensus 41 ~~P~L~l~d~~g~~~E~i~i~~w~~d~i~efL~~k 75 (78)
T PF08806_consen 41 APPELVLLDEDGEEVERINIEKWKTDEIEEFLNEK 75 (78)
T ss_dssp ---EEEEE-SSS--SEEEE-SSSSHCHHHHHHHHH
T ss_pred CCCEEEEEcCCCCEEEEEEcccCCHHHHHHHHHHh
Confidence 35788887 6888766543 45899999998775
No 319
>COG3411 Ferredoxin [Energy production and conversion]
Probab=56.84 E-value=31 Score=18.78 Aligned_cols=30 Identities=10% Similarity=0.208 Sum_probs=23.1
Q ss_pred eeEEEEEeCCeEEEEEeCC-ChHHHHHHHHHHhhc
Q 032496 100 TPTFFFLKDGQQVDKLVGA-NKPELQKKVAAAVDS 133 (139)
Q Consensus 100 ~Pt~~~~~~g~~~~~~~g~-~~~~l~~~i~~~~~~ 133 (139)
=|+++++.+| .|.+. +.+...+.+++++..
T Consensus 17 gPvl~vYpeg----vWY~~V~p~~a~rIv~~hl~~ 47 (64)
T COG3411 17 GPVLVVYPEG----VWYTRVDPEDARRIVQSHLLG 47 (64)
T ss_pred CCEEEEecCC----eeEeccCHHHHHHHHHHHHhC
Confidence 4899999998 33344 888888988888763
No 320
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=56.10 E-value=28 Score=23.36 Aligned_cols=36 Identities=6% Similarity=0.073 Sum_probs=26.2
Q ss_pred EEEEeCCCChhhhhhhHhHHHHHHhCC-CcEEEEEeC
Q 032496 50 IANFSATWCGPCRMIAPFFSELSEKYP-SLMFLLVDV 85 (139)
Q Consensus 50 lv~f~~~~C~~C~~~~~~l~~~~~~~~-~v~~~~vd~ 85 (139)
|=+|+..-||+|.-....|+++...++ .+.+..+..
T Consensus 3 Id~~~D~vcPwcylg~~~l~~~~~~~~v~i~~~P~~L 39 (209)
T cd03021 3 IELYYDVVSPYSYLAFEVLCRYQTAWNVDITYVPVFL 39 (209)
T ss_pred eEEEEeCCChHHHHHHHHHHHHHHHhCCeEEEEeeeh
Confidence 446778899999999999999887654 345445443
No 321
>PF05679 CHGN: Chondroitin N-acetylgalactosaminyltransferase; InterPro: IPR008428 This family represents Chondroitin N-acetylgalactosaminyltransferase. Proteins have a type II transmembrane topology. The enzyme is involved in the biosynthetic initiation and elongation of chondroitin sulphate and is the key enzyme responsible for the selective chain assembly of chondroitin/dermatan sulphate on the linkage region tetrasaccharide common to various proteoglycans containing chondroitin/dermatan sulphate or heparin/heparan sulphate chains. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0032580 Golgi cisterna membrane
Probab=55.46 E-value=82 Score=24.55 Aligned_cols=63 Identities=19% Similarity=0.233 Sum_probs=35.5
Q ss_pred CCEEEEEEeCCCC-hhhhhhhHhHHHHHHhCCC--cEEEEEe-CCcchhhhhhCCCccee--EEEEEeC
Q 032496 46 GKIVIANFSATWC-GPCRMIAPFFSELSEKYPS--LMFLLVD-VDELVEFSTSWDIKATP--TFFFLKD 108 (139)
Q Consensus 46 ~k~vlv~f~~~~C-~~C~~~~~~l~~~~~~~~~--v~~~~vd-~~~~~~~~~~~~v~~~P--t~~~~~~ 108 (139)
-..+||+|+.+.- ..=......+.++.++++. +.++.+. ..-....+-..|+...| +++++.+
T Consensus 281 ~~L~vV~~~~~~~~~~~~~ik~~l~~l~~k~~~~~i~~i~~~~~~fsr~~~Ld~g~~~~~~d~L~f~~D 349 (499)
T PF05679_consen 281 VFLTVVLFYDPSDSDSISQIKELLEELERKYPFSRIKWISVKTGEFSRGAALDVGAKKFPPDSLLFFCD 349 (499)
T ss_pred eEEEEEEecCcccchhHHHHHHHHHHHHHhCCccceEEEEecCCCccHHHHHHhhcccCCCCcEEEEEe
Confidence 3467777877433 3333456677888888875 6666665 33333444444555444 3555443
No 322
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=55.05 E-value=68 Score=23.90 Aligned_cols=75 Identities=16% Similarity=0.186 Sum_probs=38.7
Q ss_pred CCCChhhh-hhhHhHHHHHHhCC----CcEEEEEeCCcch---hhhhhCCCc-cee-EEEEEeCCeEEEEE-eCC-ChHH
Q 032496 55 ATWCGPCR-MIAPFFSELSEKYP----SLMFLLVDVDELV---EFSTSWDIK-ATP-TFFFLKDGQQVDKL-VGA-NKPE 122 (139)
Q Consensus 55 ~~~C~~C~-~~~~~l~~~~~~~~----~v~~~~vd~~~~~---~~~~~~~v~-~~P-t~~~~~~g~~~~~~-~g~-~~~~ 122 (139)
=|.|+.|. .+....+++.+... ++++..+.|--|- .....||+. +-| ..++|++|+++.+. ..- -.++
T Consensus 271 CPtCGRt~~Dl~~~~~~ie~~l~~l~~~lkIAVMGCiVNGPGEa~~AD~GiaGgg~g~~~lf~~g~~v~k~~~ee~~vd~ 350 (359)
T PF04551_consen 271 CPTCGRTEFDLQELVAEIEERLKHLKKGLKIAVMGCIVNGPGEAKDADIGIAGGGKGKGILFKKGEVVKKVIPEEEIVDE 350 (359)
T ss_dssp ----TT--SHHHHHHHHHHHHCCCHHCG-EEEEESSTCCCHHHCTTSSEEEE-E-TTCEEEECTTEEEEEE-CSTCHHHH
T ss_pred CCCCCCccchHHHHHHHHHHHHhcCCCCceEEEEeeeecCCchhhhCceeeecCCCCeEEEEECCEEEEecCCHHHHHHH
Confidence 34444443 23344455555554 4888888886431 112345665 434 47888999999986 333 3445
Q ss_pred HHHHHHH
Q 032496 123 LQKKVAA 129 (139)
Q Consensus 123 l~~~i~~ 129 (139)
|.+.|++
T Consensus 351 L~~~I~~ 357 (359)
T PF04551_consen 351 LIELIEE 357 (359)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 5555544
No 323
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=53.94 E-value=43 Score=19.52 Aligned_cols=35 Identities=17% Similarity=0.103 Sum_probs=21.8
Q ss_pred CcEEEEEeCCcchhhhhh----C----CCcceeEEEEEeCCeEEE
Q 032496 77 SLMFLLVDVDELVEFSTS----W----DIKATPTFFFLKDGQQVD 113 (139)
Q Consensus 77 ~v~~~~vd~~~~~~~~~~----~----~v~~~Pt~~~~~~g~~~~ 113 (139)
++.|-.+|++.+++..+. - +-..+|.+++ +++.+.
T Consensus 30 ~I~f~eiDI~~d~~~r~em~~~~~~~~g~~tvPQIFi--~~~~iG 72 (92)
T cd03030 30 KIEFEEVDISMNEENRQWMRENVPNENGKPLPPQIFN--GDEYCG 72 (92)
T ss_pred CCceEEEecCCCHHHHHHHHHhcCCCCCCCCCCEEEE--CCEEee
Confidence 688999999876654332 2 2356677665 655443
No 324
>KOG3286 consensus Selenoprotein T [General function prediction only]
Probab=53.80 E-value=64 Score=21.99 Aligned_cols=71 Identities=14% Similarity=0.137 Sum_probs=50.0
Q ss_pred EEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcch---hhhhhCCCcceeEEEEEeCCeEEEEEeCC
Q 032496 48 IVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELV---EFSTSWDIKATPTFFFLKDGQQVDKLVGA 118 (139)
Q Consensus 48 ~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~---~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~ 118 (139)
+.+-.+|--.|++=+.+....+-+.++||++.+...|..... -+++-..+-.+=.+.++-.|.-...+.|.
T Consensus 70 ptl~i~fCvSCgYk~af~~~~~~l~ekyPgl~IegaNy~Pp~~kr~lAk~v~v~k~gvIglii~G~~pF~~iGl 143 (226)
T KOG3286|consen 70 PTLEINFCVSCGYKQAFEQYKKFLKEKYPGLDIEGANYPPPAWKRYLAKVVSVVKMGVIGLIIGGKNPFEFIGL 143 (226)
T ss_pred CcEEEEEEEecCcHHHHHHHHHHHHhhCCCceeecCcCCCchHHHHHHHHHHHHhheeEEEEeccCCccceecC
Confidence 666677778899988888888888999999988888876532 33444344444445555566666677787
No 325
>PF12617 LdpA_C: Iron-Sulfur binding protein C terminal; InterPro: IPR021039 This entry represents the C-terminal region of the iron-sulphur protein LdpA (Light dependent period), which is found in phototropic organisms. LdpA was originally identified in cyanobacteria where it is involved in light-dependent modulation of the circadian clock. The presence of iron-sulphur clusters on LdpA suggests that it may modulate the circadian clock as an indirect function of light intensity by sensing changes in cellular physiology [].
Probab=50.33 E-value=59 Score=21.75 Aligned_cols=71 Identities=13% Similarity=0.255 Sum_probs=39.8
Q ss_pred hhhhHhHHHHHHhCCCcEEEEEeCCcchhhhhh----CC-CcceeEEEEE-eCCeEEEEEeCC-ChHHHHHHHHHHhh
Q 032496 62 RMIAPFFSELSEKYPSLMFLLVDVDELVEFSTS----WD-IKATPTFFFL-KDGQQVDKLVGA-NKPELQKKVAAAVD 132 (139)
Q Consensus 62 ~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~----~~-v~~~Pt~~~~-~~g~~~~~~~g~-~~~~l~~~i~~~~~ 132 (139)
..|...++.+....+.++++.|.|...+.+.+. |. +...|...+. -||++..-..|. +.-.-.++-++++.
T Consensus 21 ~~F~~lw~~l~~~~~~Lk~lAiSc~~~~~li~~L~~~~~~l~~l~~~~iWQ~DGRPMSGDIG~GTt~aaV~l~~~v~~ 98 (183)
T PF12617_consen 21 AAFERLWQALAPSVPQLKLLAISCPDGEGLIDYLWQLYEILRPLPCPLIWQLDGRPMSGDIGDGTTRAAVKLAQKVLS 98 (183)
T ss_pred HHHHHHHHHHHhhhhhccEEEEECCCCHHHHHHHHHHHHHHhccCCCeeEeeCCcccCCCCCCcHHHHHHHHHHHHhh
Confidence 455556666666666677778877766554332 33 2344544444 678777665565 44444444444443
No 326
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=49.91 E-value=41 Score=18.17 Aligned_cols=55 Identities=13% Similarity=0.022 Sum_probs=33.9
Q ss_pred EEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCC---cchhhhhhCCCcceeEEEEEeCCe
Q 032496 52 NFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVD---ELVEFSTSWDIKATPTFFFLKDGQ 110 (139)
Q Consensus 52 ~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~---~~~~~~~~~~v~~~Pt~~~~~~g~ 110 (139)
.|+.+.|+.|.+.+-.++...- .+.+..++.. ..+++.+......+|++... +|.
T Consensus 3 Ly~~~~~~~~~~~~~~l~~~gi---~~~~~~v~~~~~~~~~~~~~~nP~~~vP~L~~~-~g~ 60 (75)
T cd03044 3 LYTYPGNPRSLKILAAAKYNGL---DVEIVDFQPGKENKTPEFLKKFPLGKVPAFEGA-DGF 60 (75)
T ss_pred EecCCCCccHHHHHHHHHHcCC---ceEEEecccccccCCHHHHHhCCCCCCCEEEcC-CCC
Confidence 4567788888888777665421 2555555554 23445555567789998653 344
No 327
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=48.71 E-value=43 Score=18.05 Aligned_cols=55 Identities=13% Similarity=0.088 Sum_probs=34.3
Q ss_pred EEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCc----chhhhhhCCCcceeEEEEEeCCeE
Q 032496 52 NFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDE----LVEFSTSWDIKATPTFFFLKDGQQ 111 (139)
Q Consensus 52 ~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~----~~~~~~~~~v~~~Pt~~~~~~g~~ 111 (139)
.++.+.++.|+...-.+....- .+....++... .+++.+......+|++.. +|..
T Consensus 3 ly~~~~s~~~~~v~~~l~~~g~---~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~--~~~~ 61 (76)
T cd03050 3 LYYDLMSQPSRAVYIFLKLNKI---PFEECPIDLRKGEQLTPEFKKINPFGKVPAIVD--GDFT 61 (76)
T ss_pred EeeCCCChhHHHHHHHHHHcCC---CcEEEEecCCCCCcCCHHHHHhCcCCCCCEEEE--CCEE
Confidence 4667889999888776665532 24455555432 234555566788998863 5543
No 328
>PF14437 MafB19-deam: MafB19-like deaminase
Probab=48.52 E-value=72 Score=20.53 Aligned_cols=28 Identities=21% Similarity=0.405 Sum_probs=22.1
Q ss_pred CCEEEEEEeCCCChhhhhhhHhHHHHHHhCC
Q 032496 46 GKIVIANFSATWCGPCRMIAPFFSELSEKYP 76 (139)
Q Consensus 46 ~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~ 76 (139)
++.+.+++-.+-|.+|+ ..+..++++..
T Consensus 99 g~~~tm~Vdr~vC~~C~---~~i~~~a~~lG 126 (146)
T PF14437_consen 99 GRSMTMYVDRDVCGYCG---GDIPSMAEKLG 126 (146)
T ss_pred CCeEEEEECcccchHHH---HHHHHHHHHcC
Confidence 66778888899999999 66667777763
No 329
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=47.96 E-value=64 Score=22.35 Aligned_cols=53 Identities=19% Similarity=0.308 Sum_probs=33.9
Q ss_pred CCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhhhhhCC-CcceeEEE-EEeCCeEEE
Q 032496 56 TWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWD-IKATPTFF-FLKDGQQVD 113 (139)
Q Consensus 56 ~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~-v~~~Pt~~-~~~~g~~~~ 113 (139)
|-|+..+.+...|+.. ++.|...|+-.+.++..... ...+|||= +|-+|..+.
T Consensus 152 P~CGFS~~~v~iL~~~-----nV~~~~fdIL~DeelRqglK~fSdWPTfPQlyI~GEFiG 206 (227)
T KOG0911|consen 152 PKCGFSRQLVGILQSH-----NVNYTIFDVLTDEELRQGLKEFSDWPTFPQLYVKGEFIG 206 (227)
T ss_pred ccccccHHHHHHHHHc-----CCCeeEEeccCCHHHHHHhhhhcCCCCccceeECCEecc
Confidence 5777777777766554 67788899988888755443 23455532 223776544
No 330
>cd00652 TBP_TLF TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA. New members of the TBP family, called TBP-like proteins (TBLP, TLF, TLP) or TBP-related factors (TRF1, TRF2,TRP), are similar to the core domain of TBPs, with identical or chemically similar amino acids at many
Probab=46.55 E-value=83 Score=20.72 Aligned_cols=59 Identities=8% Similarity=0.069 Sum_probs=35.1
Q ss_pred HHHHHHhCCCcEEEEEeCCcchhhhhhCCCcceeEEEEEeCCeEEEEEeCC-ChHHHHHHHHHHhh
Q 032496 68 FSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGA-NKPELQKKVAAAVD 132 (139)
Q Consensus 68 l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~i~~~~~ 132 (139)
|.+++...+++ ..+.+..+.+.-++.- --.++++|..|+++-. |. +.+++...++++..
T Consensus 19 L~~la~~~~n~---~YePe~fpgli~R~~~-P~~t~lIf~sGKivit--Gaks~~~~~~a~~~~~~ 78 (174)
T cd00652 19 LRKIALAARNA---EYNPKRFPGVIMRLRE-PKTTALIFSSGKMVIT--GAKSEEDAKLAARKYAR 78 (174)
T ss_pred HHHHHhhCCCc---EECCCccceEEEEcCC-CcEEEEEECCCEEEEE--ecCCHHHHHHHHHHHHH
Confidence 45555554442 3444455554333322 2347889999998776 76 77777766666544
No 331
>cd03062 TRX_Fd_Sucrase TRX-like [2Fe-2S] Ferredoxin (Fd) family, Sucrase subfamily; composed of proteins with similarity to a novel plant enzyme, isolated from potato, which contains a Fd-like domain and exhibits sucrolytic activity. The putative active site of the Fd-like domain of the enzyme contains two cysteines and two histidines for possible binding to iron-sulfur clusters, compared to four cysteines present in the active site of Fd.
Probab=46.13 E-value=49 Score=19.38 Aligned_cols=31 Identities=13% Similarity=0.127 Sum_probs=23.7
Q ss_pred ceeEEEEEe--CCeEEEEEeCC-ChHHHHHHHHHHhhc
Q 032496 99 ATPTFFFLK--DGQQVDKLVGA-NKPELQKKVAAAVDS 133 (139)
Q Consensus 99 ~~Pt~~~~~--~g~~~~~~~g~-~~~~l~~~i~~~~~~ 133 (139)
.-|+++++. +| .+.+. +++++...|++.+..
T Consensus 52 ~gp~vvvyP~~~g----~wy~~v~p~~v~~Iv~~hl~~ 85 (97)
T cd03062 52 FAGNVIIYPKGDG----IWYGRVTPEHVPPIVDRLILG 85 (97)
T ss_pred cCCEEEEEeCCCe----eEEeecCHHHHHHHHHHHhcC
Confidence 458999998 65 44455 999999999888765
No 332
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=45.99 E-value=52 Score=18.20 Aligned_cols=66 Identities=6% Similarity=0.044 Sum_probs=36.3
Q ss_pred CCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhhhh---hCCCcceeEEEEEeCCeEEEEEeCCChHHHHHHHHH
Q 032496 55 ATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFST---SWDIKATPTFFFLKDGQQVDKLVGANKPELQKKVAA 129 (139)
Q Consensus 55 ~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~---~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~l~~~i~~ 129 (139)
.+||++|.+.+-.|....-. +.+..++......... .-....+|++.. .+|+.+. ....|.+.|++
T Consensus 13 ~~~Sp~~~kv~~~L~~~~i~---~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~-~~~~~l~-----eS~aI~~yL~~ 81 (84)
T cd03038 13 RAFSPNVWKTRLALNHKGLE---YKTVPVEFPDIPPILGELTSGGFYTVPVIVD-GSGEVIG-----DSFAIAEYLEE 81 (84)
T ss_pred CCcCChhHHHHHHHHhCCCC---CeEEEecCCCcccccccccCCCCceeCeEEE-CCCCEEe-----CHHHHHHHHHH
Confidence 46889999988877665222 3444555433222211 123567898754 3254332 55666666654
No 333
>PF07700 HNOB: Heme NO binding; InterPro: IPR011644 This ligand-binding domain is found in soluble guanylate cyclases. In soluble guanylate cyclases this domain binds heme via a covalent linkage to histidine []. Soluble guanylate cyclases are nitric oxide-responsive signaling proteins.; GO: 0020037 heme binding; PDB: 3TFE_A 2O0C_B 3TFA_A 2O09_B 2O0G_B 3L6J_A 3TFG_B 3TF8_A 3TFF_A 3TF9_B ....
Probab=45.82 E-value=82 Score=20.44 Aligned_cols=41 Identities=7% Similarity=0.216 Sum_probs=32.5
Q ss_pred CCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCC--cEEEEEeC
Q 032496 45 EGKIVIANFSATWCGPCRMIAPFFSELSEKYPS--LMFLLVDV 85 (139)
Q Consensus 45 ~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~--v~~~~vd~ 85 (139)
.++-+.+.++++.++.|.-+...++.+++.+.+ |.+-.+++
T Consensus 126 ~~~~l~l~Y~S~R~gl~~~~~Gli~g~A~~f~~~~v~i~~~~~ 168 (171)
T PF07700_consen 126 DDNELTLHYRSPRPGLCPYVIGLIRGAAKHFFELDVEIEHVEC 168 (171)
T ss_dssp ETTEEEEEEEESSSSTHHHHHHHHHHHHHHTTEEEEEEEEEEC
T ss_pred CCCEEEEEEECCCcCHHHHHHHHHHHHHHHhCCCCeEEEEecc
Confidence 345778888899999999999999999999875 55444443
No 334
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=45.41 E-value=18 Score=25.34 Aligned_cols=58 Identities=16% Similarity=0.083 Sum_probs=37.1
Q ss_pred HHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhhhhhCCCc
Q 032496 39 MSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIK 98 (139)
Q Consensus 39 ~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~ 98 (139)
+..+...+++++ -+.+.++.++.+....+++...........++.++-..+..+||+.
T Consensus 214 v~~A~~~g~pv~--~~~p~s~~a~~~~~la~ell~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (275)
T TIGR01287 214 VQKAEIRKMTVI--EYDPESEQANEYRELAKKIYENTEFVIPTPLTMDELEEILMKFGIM 271 (275)
T ss_pred HHHHHHcCCceE--EeCCCCHHHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHh
Confidence 344445666664 3467788888777777777665444445556666667777777753
No 335
>PF07511 DUF1525: Protein of unknown function (DUF1525); InterPro: IPR011090 This family of proteins is restricted to the Gammaproteobacteria. Members belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=45.31 E-value=67 Score=19.70 Aligned_cols=15 Identities=27% Similarity=0.277 Sum_probs=13.0
Q ss_pred hhhCCCcceeEEEEE
Q 032496 92 STSWDIKATPTFFFL 106 (139)
Q Consensus 92 ~~~~~v~~~Pt~~~~ 106 (139)
+-.|||..+|.++|.
T Consensus 76 Aw~lgi~k~PAVVfD 90 (114)
T PF07511_consen 76 AWSLGITKYPAVVFD 90 (114)
T ss_pred HHHhCccccCEEEEc
Confidence 457899999999995
No 336
>PLN00062 TATA-box-binding protein; Provisional
Probab=45.21 E-value=90 Score=20.74 Aligned_cols=59 Identities=8% Similarity=0.082 Sum_probs=33.4
Q ss_pred HHHHHHhCCCcEEEEEeCCcchhhhhhCCCcceeEEEEEeCCeEEEEEeCC-ChHHHHHHHHHHhh
Q 032496 68 FSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGA-NKPELQKKVAAAVD 132 (139)
Q Consensus 68 l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~i~~~~~ 132 (139)
|++++....+ +..+.+..+.+.-+..- .-.++++|..|+++.. |. +.+++...+.++..
T Consensus 19 L~~la~~~~n---~eYePe~fpgli~Rl~~-Pk~t~lIF~SGKiviT--Gaks~e~a~~a~~~~~~ 78 (179)
T PLN00062 19 LKKIALQARN---AEYNPKRFAAVIMRIRE-PKTTALIFASGKMVCT--GAKSEHDSKLAARKYAR 78 (179)
T ss_pred HHHHHhhCCC---CEECCccCcEEEEEeCC-CcEEEEEECCCeEEEE--ecCCHHHHHHHHHHHHH
Confidence 4444444333 34444445554333322 1247889999998776 76 77777666555543
No 337
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=44.82 E-value=36 Score=20.22 Aligned_cols=41 Identities=15% Similarity=-0.037 Sum_probs=18.9
Q ss_pred EEEeCCCChhhhhhhHhHHHHHHhC--CCcEEEEEeCCcchhh
Q 032496 51 ANFSATWCGPCRMIAPFFSELSEKY--PSLMFLLVDVDELVEF 91 (139)
Q Consensus 51 v~f~~~~C~~C~~~~~~l~~~~~~~--~~v~~~~vd~~~~~~~ 91 (139)
|.+|.+.+.....+...=+++..-+ .+|.|-.+|+..+++.
T Consensus 3 I~vy~ss~sg~~~ikk~q~~v~~iL~a~kI~fe~vDIa~~e~~ 45 (99)
T PF04908_consen 3 IKVYISSISGSREIKKRQQRVLMILEAKKIPFEEVDIAMDEEA 45 (99)
T ss_dssp EEEEE-SS-SSHHHHHHHHHHHHHHHHTT--EEEEETTT-HHH
T ss_pred EEEEEecccCCHHHHHHHHHHHHHHHHcCCCcEEEeCcCCHHH
Confidence 3344444444444444333332222 3699999999876553
No 338
>COG2101 SPT15 TATA-box binding protein (TBP), component of TFIID and TFIIIB [Transcription]
Probab=44.08 E-value=70 Score=21.30 Aligned_cols=32 Identities=16% Similarity=0.346 Sum_probs=24.9
Q ss_pred eEEEEEeCCeEEEEEeCC-ChHHHHHHHHHHhhcc
Q 032496 101 PTFFFLKDGQQVDKLVGA-NKPELQKKVAAAVDSV 134 (139)
Q Consensus 101 Pt~~~~~~g~~~~~~~g~-~~~~l~~~i~~~~~~~ 134 (139)
+++++|.-|+.+.. |. +.+++...+..++++.
T Consensus 54 ~a~LIF~SGK~VcT--GaKs~ed~~~av~~~~~~L 86 (185)
T COG2101 54 TAALIFRSGKVVCT--GAKSVEDVHRAVKKLAKKL 86 (185)
T ss_pred ceEEEEecCcEEEe--ccCcHHHHHHHHHHHHHHH
Confidence 37888899998776 87 8888888887776653
No 339
>COG2999 GrxB Glutaredoxin 2 [Posttranslational modification, protein turnover, chaperones]
Probab=43.87 E-value=39 Score=22.66 Aligned_cols=51 Identities=12% Similarity=0.008 Sum_probs=29.7
Q ss_pred EEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhhhhhCCCcceeEEEE
Q 032496 51 ANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFF 105 (139)
Q Consensus 51 v~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~ 105 (139)
+|.| ..||+|.+.+-.+.-. .-.+....++-|....-.+.-|-..+|.+.-
T Consensus 3 LYIY-dHCPfcvrarmi~Gl~---nipve~~vL~nDDe~Tp~rmiG~KqVPiL~K 53 (215)
T COG2999 3 LYIY-DHCPFCVRARMIFGLK---NIPVELHVLLNDDEETPIRMIGQKQVPILQK 53 (215)
T ss_pred eeEe-ccChHHHHHHHHhhcc---CCChhhheeccCcccChhhhhcccccceEEc
Confidence 3444 4599999887544222 0125555566665555556667778885543
No 340
>PF11453 DUF2950: Protein of unknown function (DUF2950); InterPro: IPR021556 This is a bacterial family of uncharacterised proteins.
Probab=43.37 E-value=35 Score=24.28 Aligned_cols=38 Identities=18% Similarity=0.286 Sum_probs=29.8
Q ss_pred hhCCCcceeEEEEEeCCeEEEEEeCCChHHHHHHHHHH
Q 032496 93 TSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKVAAA 130 (139)
Q Consensus 93 ~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~l~~~i~~~ 130 (139)
-+||.+++=||++-.+|++..+-.|.....+.+.|..+
T Consensus 225 a~YG~TGVmtF~Vn~~g~VYqkDLG~~t~~~A~ai~~F 262 (271)
T PF11453_consen 225 AEYGETGVMTFMVNQDGQVYQKDLGPDTAAKAAAITSF 262 (271)
T ss_pred hhhCCCceEEEEECCCCcEEecccCcchHHHhhhhhcc
Confidence 36788888899999999999998888666666655543
No 341
>PF07152 YaeQ: YaeQ protein; InterPro: IPR009822 This family consists of several hypothetical bacterial proteins of around 180 residues in length, which are often known as YaeQ. YaeQ is homologous to RfaH, a specialised transcription elongation protein. YaeQ is known to compensate for loss of RfaH function [].; PDB: 3C0U_B 2OT9_A 2G3W_B.
Probab=42.82 E-value=89 Score=20.73 Aligned_cols=90 Identities=10% Similarity=0.029 Sum_probs=43.1
Q ss_pred ccCCccCCCCCCCCCcccCCCceEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEE
Q 032496 4 CLSKRQHDEEDGEHPVEFAGGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLV 83 (139)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~v 83 (139)
++.+-+.++++..+...+.|.-..=|.-..--.+.+..+....+-|+|+-| -............-...++++.++.+
T Consensus 57 FtkGls~~dePdLw~k~~~g~i~lWIevG~Pd~kRi~kA~~~A~~V~vy~y---~~~~~~Ww~~~~~~l~r~~Nl~V~~l 133 (174)
T PF07152_consen 57 FTKGLSTDDEPDLWQKDLTGRIELWIEVGQPDEKRIKKASGRADQVVVYTY---GRAADVWWQQNKGKLSRLKNLSVFQL 133 (174)
T ss_dssp E--CCC-TTS-SEEEE-TTS-EEEEEEES---HHHHHHHHHHEEEEEEEE----CHHHHHHHHHHHHHHTT-TTEEEEE-
T ss_pred ecCCCCCCCCcceeeeCCCCCEEEEEEcCCCCHHHHHHHhccCCeEEEEEc---CcHHHHHHHHhHHHHhCCCCcEEEEc
Confidence 344555666666666667665444344333334555555455566777666 22223333444444455678999999
Q ss_pred eCCcchhhhhhCC
Q 032496 84 DVDELVEFSTSWD 96 (139)
Q Consensus 84 d~~~~~~~~~~~~ 96 (139)
+.+...+++....
T Consensus 134 ~~~~~~~La~l~~ 146 (174)
T PF07152_consen 134 DDEFLEALAALAE 146 (174)
T ss_dssp -HHHHHHHHTT--
T ss_pred CHHHHHHHHHHhh
Confidence 9887777766443
No 342
>TIGR03759 conj_TIGR03759 integrating conjugative element protein, PFL_4693 family. Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown.
Probab=42.69 E-value=72 Score=21.67 Aligned_cols=33 Identities=21% Similarity=0.255 Sum_probs=23.1
Q ss_pred EEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeC
Q 032496 50 IANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDV 85 (139)
Q Consensus 50 lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~ 85 (139)
+.+|....|+.|......+.. ....+.++.|+-
T Consensus 112 lalFvkd~C~~C~~~~~~l~a---~~~~~Diylvgs 144 (200)
T TIGR03759 112 LALFVKDDCVACDARVQRLLA---DNAPLDLYLVGS 144 (200)
T ss_pred EEEEeCCCChHHHHHHHHHhc---CCCceeEEEecC
Confidence 556777999999988776622 233578888874
No 343
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=42.53 E-value=1.5e+02 Score=22.65 Aligned_cols=36 Identities=22% Similarity=0.413 Sum_probs=27.9
Q ss_pred EEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeC
Q 032496 50 IANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDV 85 (139)
Q Consensus 50 lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~ 85 (139)
+|.|++-.=+.-....|.++++.+.+|++.++.--+
T Consensus 51 ~vWiHaaSVGEv~a~~pLv~~l~~~~P~~~ilvTt~ 86 (419)
T COG1519 51 LVWIHAASVGEVLAALPLVRALRERFPDLRILVTTM 86 (419)
T ss_pred eEEEEecchhHHHHHHHHHHHHHHhCCCCCEEEEec
Confidence 577888878888888899999988888866655443
No 344
>PRK13669 hypothetical protein; Provisional
Probab=42.37 E-value=65 Score=18.31 Aligned_cols=55 Identities=24% Similarity=0.327 Sum_probs=35.9
Q ss_pred HHHHHHhCCCcEEEEEeCCcchhhhhhCCCcceeEEEEEeCCeEEEEEeCCChHHHHHHHHHHhhc
Q 032496 68 FSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKVAAAVDS 133 (139)
Q Consensus 68 l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~l~~~i~~~~~~ 133 (139)
++.+ +++|++.++..++-..=..+. .-|--++ ||+++. +.++++|.+.|.+.+..
T Consensus 20 ~~~L-e~dP~~dVie~gCls~CG~C~-----~~~FAlV--ng~~V~---a~t~eeL~~kI~~~i~e 74 (78)
T PRK13669 20 FEKL-EKDPNLDVLEYGCLGYCGICS-----EGLFALV--NGEVVE---GETPEELVENIYAHLEE 74 (78)
T ss_pred HHHH-HhCCCceEEEcchhhhCcCcc-----cCceEEE--CCeEee---cCCHHHHHHHHHHHHhh
Confidence 4444 568888888877654333322 2343344 777655 66999999999888775
No 345
>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma
Probab=42.25 E-value=49 Score=17.60 Aligned_cols=54 Identities=11% Similarity=0.163 Sum_probs=29.3
Q ss_pred EeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcc--hhhhhhCCCcceeEEEEEeCCeE
Q 032496 53 FSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDEL--VEFSTSWDIKATPTFFFLKDGQQ 111 (139)
Q Consensus 53 f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~--~~~~~~~~v~~~Pt~~~~~~g~~ 111 (139)
++.+.|+.|+..+-.+....-. +....++..+. ..+.+......+|++.. +|..
T Consensus 4 y~~~~~~~~~~v~~~l~~~gi~---~e~~~~~~~~~~~~~~~~~~p~~~vP~L~~--~~~~ 59 (72)
T cd03039 4 TYFNIRGRGEPIRLLLADAGVE---YEDVRITYEEWPELDLKPTLPFGQLPVLEI--DGKK 59 (72)
T ss_pred EEEcCcchHHHHHHHHHHCCCC---cEEEEeCHHHhhhhhhccCCcCCCCCEEEE--CCEE
Confidence 3456788888877766555222 33444444322 12333344668898864 4543
No 346
>TIGR02743 TraW type-F conjugative transfer system protein TraW. This protein is an essential component of the F-type conjugative transfer sytem for plasmid DNA transfer and has been shown to be localized to the periplasm.
Probab=42.00 E-value=38 Score=23.02 Aligned_cols=26 Identities=19% Similarity=0.397 Sum_probs=20.2
Q ss_pred CcchhhhhhCCCcceeEEEEEeCCeEE
Q 032496 86 DELVEFSTSWDIKATPTFFFLKDGQQV 112 (139)
Q Consensus 86 ~~~~~~~~~~~v~~~Pt~~~~~~g~~~ 112 (139)
|....+.++|+|..+|+++. .+|+..
T Consensus 172 dQ~g~Lt~rF~I~~VPavV~-q~g~~l 197 (202)
T TIGR02743 172 DQHGKLTQKFGIKHVPARVS-QEGLRL 197 (202)
T ss_pred cCCchHhhccCceeeceEEE-ecCCEE
Confidence 45667899999999999987 555543
No 347
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=41.39 E-value=1.4e+02 Score=21.97 Aligned_cols=90 Identities=13% Similarity=0.025 Sum_probs=52.7
Q ss_pred hCCCEEEEEEeCCCChhhhh-hhHhH-HHHHHhCCCcEEEEEeCCcchhhhhhCC--CcceeEEEEEeCCeE-EEE-EeC
Q 032496 44 KEGKIVIANFSATWCGPCRM-IAPFF-SELSEKYPSLMFLLVDVDELVEFSTSWD--IKATPTFFFLKDGQQ-VDK-LVG 117 (139)
Q Consensus 44 ~~~k~vlv~f~~~~C~~C~~-~~~~l-~~~~~~~~~v~~~~vd~~~~~~~~~~~~--v~~~Pt~~~~~~g~~-~~~-~~g 117 (139)
..|.|.+++|..+......+ +...+ +++.++-..+.++..|...-..-...+| -...|.+.+..=... ..- +..
T Consensus 225 EEGlPflILf~~kdD~~s~k~F~~aI~ReL~~e~~~in~l~ADG~~f~hpL~HlgKs~~DLPviaIDsF~Hmylfp~f~d 304 (375)
T KOG0912|consen 225 EEGLPFLILFRKKDDKESEKIFKNAIARELDDETLAINFLTADGKVFKHPLRHLGKSPDDLPVIAIDSFRHMYLFPDFND 304 (375)
T ss_pred hcCCceEEEEecCCcccHHHHHHHHHHHHhhhhhhccceeecCcceecchHHHhCCCcccCcEEEeeccceeeecCchhh
Confidence 67899999999888776554 33333 4455444458888888875444334444 346676666422111 110 111
Q ss_pred C-ChHHHHHHHHHHhhc
Q 032496 118 A-NKPELQKKVAAAVDS 133 (139)
Q Consensus 118 ~-~~~~l~~~i~~~~~~ 133 (139)
. .+..|.+++..+-..
T Consensus 305 i~~pGkLkqFv~DL~sg 321 (375)
T KOG0912|consen 305 INIPGKLKQFVADLHSG 321 (375)
T ss_pred hcCccHHHHHHHHHhCc
Confidence 1 456788888776543
No 348
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=39.12 E-value=1.2e+02 Score=23.48 Aligned_cols=53 Identities=19% Similarity=0.219 Sum_probs=33.2
Q ss_pred hHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCc
Q 032496 33 DIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDE 87 (139)
Q Consensus 33 ~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~ 87 (139)
+.-++.+.....-+||++|..-+ .-|+.......-.++.++| ++.++.+||.+
T Consensus 167 eAEervI~ELk~igKPFvillNs-~~P~s~et~~L~~eL~ekY-~vpVlpvnc~~ 219 (492)
T PF09547_consen 167 EAEERVIEELKEIGKPFVILLNS-TKPYSEETQELAEELEEKY-DVPVLPVNCEQ 219 (492)
T ss_pred HHHHHHHHHHHHhCCCEEEEEeC-CCCCCHHHHHHHHHHHHHh-CCcEEEeehHH
Confidence 33445566665668888776553 2344444444445666777 78888999864
No 349
>cd04518 TBP_archaea archaeal TATA box binding protein (TBP): TBPs are transcription factors present in archaea and eukaryotes, that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=38.29 E-value=1e+02 Score=20.40 Aligned_cols=30 Identities=17% Similarity=0.392 Sum_probs=23.4
Q ss_pred EEEEEeCCeEEEEEeCC-ChHHHHHHHHHHhhc
Q 032496 102 TFFFLKDGQQVDKLVGA-NKPELQKKVAAAVDS 133 (139)
Q Consensus 102 t~~~~~~g~~~~~~~g~-~~~~l~~~i~~~~~~ 133 (139)
++++|..|+++-. |. +.+++...+..+...
T Consensus 140 ~~lIF~SGKvvit--Gaks~~~~~~a~~~i~~~ 170 (174)
T cd04518 140 VLLLFSSGKMVIT--GAKSEEDAKRAVEKLLSR 170 (174)
T ss_pred EEEEeCCCEEEEE--ecCCHHHHHHHHHHHHHH
Confidence 7888899998765 77 888888887776543
No 350
>COG0295 Cdd Cytidine deaminase [Nucleotide transport and metabolism]
Probab=37.11 E-value=53 Score=20.77 Aligned_cols=13 Identities=38% Similarity=0.907 Sum_probs=8.6
Q ss_pred CCChhhhhhhHhH
Q 032496 56 TWCGPCRMIAPFF 68 (139)
Q Consensus 56 ~~C~~C~~~~~~l 68 (139)
+=|+.|+.+..+|
T Consensus 86 sPCG~CRQ~i~Ef 98 (134)
T COG0295 86 SPCGACRQVLAEF 98 (134)
T ss_pred CCcHHHHHHHHHh
Confidence 3588888776544
No 351
>PF10865 DUF2703: Domain of unknown function (DUF2703); InterPro: IPR021219 This family of protein has no known function.
Probab=36.91 E-value=1e+02 Score=19.05 Aligned_cols=57 Identities=21% Similarity=0.415 Sum_probs=36.3
Q ss_pred CCChhhhhhhHhHHHHHHh----CC--C--cEEEEEeCCcchhhhhhCCCcceeEEEEEeCCeEEEEEeC
Q 032496 56 TWCGPCRMIAPFFSELSEK----YP--S--LMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVG 117 (139)
Q Consensus 56 ~~C~~C~~~~~~l~~~~~~----~~--~--v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g 117 (139)
..|..|......|.++.+. +. + +.+-.+.++.. +++..+ -..|++.+ ||+.+..+.|
T Consensus 13 ~tC~RC~~Tg~~L~~av~~l~~~L~~~Giev~l~~~~l~~~-~~~~~~--~~S~~I~i--nG~piE~~l~ 77 (120)
T PF10865_consen 13 KTCERCGDTGETLREAVKELAPVLAPLGIEVRLEEIELDEE-EFARQP--LESPTIRI--NGRPIEDLLG 77 (120)
T ss_pred CcCCchhhHHHHHHHHHHHHHHHHHhCCcEEEEEEEECChH-HHhhcc--cCCCeeeE--CCEehhHhhC
Confidence 3899999887777665554 32 3 55556666653 455555 56688887 8887744433
No 352
>TIGR00862 O-ClC intracellular chloride channel protein. These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.
Probab=36.78 E-value=1.4e+02 Score=20.67 Aligned_cols=66 Identities=6% Similarity=0.016 Sum_probs=42.6
Q ss_pred CCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcc-hhhhhhCCCcceeEEEEEeCCeEEEEEeCCChHHHHHHHHHHh
Q 032496 56 TWCGPCRMIAPFFSELSEKYPSLMFLLVDVDEL-VEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKVAAAV 131 (139)
Q Consensus 56 ~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~-~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~l~~~i~~~~ 131 (139)
..|++|++++-.+... --.+.+..+|.... +++.+.-....+|+++- +|..+. ....|...|++..
T Consensus 17 ~~cp~~~rv~i~L~ek---gi~~e~~~vd~~~~~~~fl~inP~g~vPvL~~--~g~~l~-----ES~aI~eYL~e~~ 83 (236)
T TIGR00862 17 GNCPFSQRLFMILWLK---GVVFNVTTVDLKRKPEDLQNLAPGTHPPFLTY--NTEVKT-----DVNKIEEFLEETL 83 (236)
T ss_pred CCCHhHHHHHHHHHHc---CCCcEEEEECCCCCCHHHHHHCcCCCCCEEEE--CCEEee-----cHHHHHHHHHHHc
Confidence 5699999988777652 11366777777653 55655556778998864 554332 4566666666554
No 353
>KOG3029 consensus Glutathione S-transferase-related protein [General function prediction only]
Probab=36.56 E-value=1.7e+02 Score=21.35 Aligned_cols=70 Identities=17% Similarity=0.241 Sum_probs=39.0
Q ss_pred EEEEEeCCCChhhhhhhHhHHHHHHhCCC--cEEEEEeCCcchhhhhhCCCcceeEEEEEeCCeEEEEEeCCChHHHHHH
Q 032496 49 VIANFSATWCGPCRMIAPFFSELSEKYPS--LMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKK 126 (139)
Q Consensus 49 vlv~f~~~~C~~C~~~~~~l~~~~~~~~~--v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~l~~~ 126 (139)
-++.|--..||.|-+++..| +|.+ ..++.||.-...++.-. ....+|.+++- |+. -.+..-|...
T Consensus 90 ~l~LyQyetCPFCcKVrAFL-----DyhgisY~VVEVnpV~r~eIk~S-sykKVPil~~~--Geq-----m~dSsvIIs~ 156 (370)
T KOG3029|consen 90 DLVLYQYETCPFCCKVRAFL-----DYHGISYAVVEVNPVLRQEIKWS-SYKKVPILLIR--GEQ-----MVDSSVIISL 156 (370)
T ss_pred eEEEEeeccCchHHHHHHHH-----hhcCCceEEEEecchhhhhcccc-ccccccEEEec--cce-----echhHHHHHH
Confidence 34445556799999998877 3445 44455554444443111 35678877773 542 1133445555
Q ss_pred HHHHh
Q 032496 127 VAAAV 131 (139)
Q Consensus 127 i~~~~ 131 (139)
|.-.|
T Consensus 157 laTyL 161 (370)
T KOG3029|consen 157 LATYL 161 (370)
T ss_pred HHHHh
Confidence 54444
No 354
>PF11072 DUF2859: Protein of unknown function (DUF2859); InterPro: IPR021300 This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=36.51 E-value=66 Score=20.59 Aligned_cols=18 Identities=6% Similarity=0.115 Sum_probs=15.0
Q ss_pred chhhhhhCCCcceeEEEE
Q 032496 88 LVEFSTSWDIKATPTFFF 105 (139)
Q Consensus 88 ~~~~~~~~~v~~~Pt~~~ 105 (139)
-.++++++++.-+|.+|.
T Consensus 120 gddLA~rL~l~HYPvLIt 137 (142)
T PF11072_consen 120 GDDLARRLGLSHYPVLIT 137 (142)
T ss_pred HHHHHHHhCCCcccEEee
Confidence 356889999999998875
No 355
>KOG4498 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.49 E-value=88 Score=21.13 Aligned_cols=41 Identities=24% Similarity=0.327 Sum_probs=29.2
Q ss_pred hCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCC--CcEEEEEe
Q 032496 44 KEGKIVIANFSATWCGPCRMIAPFFSELSEKYP--SLMFLLVD 84 (139)
Q Consensus 44 ~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~--~v~~~~vd 84 (139)
.+.+.+|...-.+.|--|+.....|.++..... ++.++.+-
T Consensus 49 ~~~~avV~~vRrpgCvlCR~~aadLa~l~~~ld~~Gv~Li~vg 91 (197)
T KOG4498|consen 49 KERSAVVAFVRRPGCVLCREEAADLASLKDLLDELGVVLIAVG 91 (197)
T ss_pred hcCCeEEEEeccCcEEEeHHHHHHHHHHHHHHHHhCCEEEEEe
Confidence 456777777779999999999988877743332 45555544
No 356
>PRK00394 transcription factor; Reviewed
Probab=36.28 E-value=1.1e+02 Score=20.27 Aligned_cols=29 Identities=21% Similarity=0.403 Sum_probs=22.3
Q ss_pred EEEEEeCCeEEEEEeCC-ChHHHHHHHHHHhh
Q 032496 102 TFFFLKDGQQVDKLVGA-NKPELQKKVAAAVD 132 (139)
Q Consensus 102 t~~~~~~g~~~~~~~g~-~~~~l~~~i~~~~~ 132 (139)
++++|..|+++-. |. +.+++.+.+..+..
T Consensus 141 ~~lIF~SGKvvit--Gaks~~~~~~a~~~i~~ 170 (179)
T PRK00394 141 VVLLFGSGKLVIT--GAKSEEDAEKAVEKILE 170 (179)
T ss_pred EEEEEcCCEEEEE--ecCCHHHHHHHHHHHHH
Confidence 7888899998765 77 78888877776644
No 357
>PF14307 Glyco_tran_WbsX: Glycosyltransferase WbsX
Probab=35.94 E-value=1.1e+02 Score=22.56 Aligned_cols=41 Identities=12% Similarity=0.115 Sum_probs=30.5
Q ss_pred CCCEEEEEEeCCCChhhhhhhHhHHHHHHhCC--CcEEEEEeC
Q 032496 45 EGKIVIANFSATWCGPCRMIAPFFSELSEKYP--SLMFLLVDV 85 (139)
Q Consensus 45 ~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~--~v~~~~vd~ 85 (139)
.||||++.|-...=+.++.+...+++.+++.+ ++.++.+..
T Consensus 157 dGKPv~~Iy~p~~~pd~~~~~~~wr~~a~~~G~~giyii~~~~ 199 (345)
T PF14307_consen 157 DGKPVFLIYRPGDIPDIKEMIERWREEAKEAGLPGIYIIAVQG 199 (345)
T ss_pred CCEEEEEEECcccccCHHHHHHHHHHHHHHcCCCceEEEEEec
Confidence 57899886666666788889999998888854 566665543
No 358
>PF03227 GILT: Gamma interferon inducible lysosomal thiol reductase (GILT); InterPro: IPR004911 This family includes the two characterised human gamma-interferon-inducible lysosomal thiol reductase (GILT) sequences [, ]. It also contains several other eukaryotic putative proteins with similarity to GILT []. The aligned region contains three conserved cysteine residues. In addition, the two GILT sequences possess a C-X(2)-C motif that is shared by some of the other sequences in the family. This motif is thought to be associated with disulphide bond reduction.
Probab=35.43 E-value=1e+02 Score=18.41 Aligned_cols=21 Identities=14% Similarity=0.404 Sum_probs=15.4
Q ss_pred EEEEeCCCChhhhhh-hHhHHH
Q 032496 50 IANFSATWCGPCRMI-APFFSE 70 (139)
Q Consensus 50 lv~f~~~~C~~C~~~-~~~l~~ 70 (139)
|-.||-+-||.|+++ ...|..
T Consensus 3 v~vyyESlCPd~~~fi~~~L~p 24 (108)
T PF03227_consen 3 VEVYYESLCPDCRRFITNQLFP 24 (108)
T ss_pred EEEEEEecCHhHHHHHHHHHHH
Confidence 456888999999986 445554
No 359
>PRK15113 glutathione S-transferase; Provisional
Probab=34.89 E-value=1.4e+02 Score=19.91 Aligned_cols=61 Identities=16% Similarity=0.120 Sum_probs=37.1
Q ss_pred CEEEEEEeCC--CChhhhhhhHhHHHHHHhCCCcEEEEEeCCc----chhhhhhCCCcceeEEEEEeCCeEE
Q 032496 47 KIVIANFSAT--WCGPCRMIAPFFSELSEKYPSLMFLLVDVDE----LVEFSTSWDIKATPTFFFLKDGQQV 112 (139)
Q Consensus 47 k~vlv~f~~~--~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~----~~~~~~~~~v~~~Pt~~~~~~g~~~ 112 (139)
++.+..++.+ .|++|++..-.+.+..- .+.++.+|... .+++.+......+|++.. +|..+
T Consensus 3 ~~~~~Ly~~~~~~s~~~~rv~~~l~e~gi---~~e~~~v~~~~~~~~~~~~~~~nP~g~VP~L~~--~~~~l 69 (214)
T PRK15113 3 KPAITLYSDAHFFSPYVMSAFVALQEKGL---PFELKTVDLDAGEHLQPTYQGYSLTRRVPTLQH--DDFEL 69 (214)
T ss_pred CCeEEEEeCCCCCCchHHHHHHHHHHcCC---CCeEEEeCCCCccccCHHHHhcCCCCCCCEEEE--CCEEE
Confidence 3445555654 69999888877765522 25556666643 245555555778999874 45433
No 360
>PRK11752 putative S-transferase; Provisional
Probab=34.80 E-value=1.6e+02 Score=20.60 Aligned_cols=54 Identities=11% Similarity=0.030 Sum_probs=34.6
Q ss_pred EeCCCChhhhhhhHhHHHH-HHhCC--CcEEEEEeCCc----chhhhhhCCCcceeEEEEE
Q 032496 53 FSATWCGPCRMIAPFFSEL-SEKYP--SLMFLLVDVDE----LVEFSTSWDIKATPTFFFL 106 (139)
Q Consensus 53 f~~~~C~~C~~~~~~l~~~-~~~~~--~v~~~~vd~~~----~~~~~~~~~v~~~Pt~~~~ 106 (139)
+|...|+.|++++-.|.++ ....+ .+.++.+|... .+++.+.-....+|+++..
T Consensus 47 Ly~~~s~~~~rV~i~L~e~~~~~~~gl~ye~~~v~~~~~~~~~~e~~~iNP~GkVP~Lv~~ 107 (264)
T PRK11752 47 LYSLGTPNGQKVTIMLEELLALGVKGAEYDAWLIRIGEGDQFSSGFVEINPNSKIPALLDR 107 (264)
T ss_pred EecCCCCchHHHHHHHHHHHhccCCCCceEEEEecCccccccCHHHHhhCCCCCCCEEEeC
Confidence 3445699999999888875 33333 35666666643 2445554556789999753
No 361
>cd04517 TLF TBP-like factors (TLF; also called TLP, TRF, TRP), which are found in most metazoans. TLFs and TBPs have well-conserved core domains; however, they only share about 60% similarity. TLFs, like TBPs, interact with TFIIA and TFIIB, which are part of the basal transcription machinery. Yet, in contrast to TBPs, TLFs seem not to interact with the TATA-box and even have a negative effect on the transcription of TATA-containing promoters. Recent results indicate that TLFs are involved in the transcription via TATA-less promoters.
Probab=34.66 E-value=1.3e+02 Score=19.87 Aligned_cols=58 Identities=12% Similarity=0.078 Sum_probs=32.8
Q ss_pred HHHHHHhCCCcEEEEEeCCcchhhhhhCCCcceeEEEEEeCCeEEEEEeCC-ChHHHHHHHHHHhh
Q 032496 68 FSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGA-NKPELQKKVAAAVD 132 (139)
Q Consensus 68 l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~i~~~~~ 132 (139)
|++++....+. ..+. ..+.+.-++.- .-.++++|..|+++-. |. +.+++...++.+.+
T Consensus 20 L~~la~~l~n~---eYeP-~fpgli~R~~~-Pk~t~lIF~sGKiviT--Gaks~~~~~~a~~~~~~ 78 (174)
T cd04517 20 LRKLALAGRNV---EYNP-RYPKVTMRLRE-PRATASVWSSGKITIT--GATSEEEAKQAARRAAR 78 (174)
T ss_pred HHHHHhhCCCC---EEeC-CCCEEEEEecC-CcEEEEEECCCeEEEE--ccCCHHHHHHHHHHHHH
Confidence 44444444332 3344 44444333322 1247888899998765 77 77777766655543
No 362
>cd04516 TBP_eukaryotes eukaryotic TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=34.26 E-value=1.3e+02 Score=19.92 Aligned_cols=58 Identities=9% Similarity=0.098 Sum_probs=31.6
Q ss_pred HHHHHHhCCCcEEEEEeCCcchhhhhhCCCcceeEEEEEeCCeEEEEEeCC-ChHHHHHHHHHHh
Q 032496 68 FSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGA-NKPELQKKVAAAV 131 (139)
Q Consensus 68 l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~i~~~~ 131 (139)
|++++....+ +..+.+..+.+.-++.- --.++++|..|+++.. |. +.+++...+.++.
T Consensus 19 L~~la~~~~n---~eYePe~fpgli~Rl~~-Pk~t~lIF~SGKiviT--Gaks~e~a~~a~~~i~ 77 (174)
T cd04516 19 LKKIALRARN---AEYNPKRFAAVIMRIRE-PKTTALIFSSGKMVCT--GAKSEDDSKLAARKYA 77 (174)
T ss_pred HHHHHhhCCC---CEECCccCcEEEEEeCC-CcEEEEEECCCeEEEE--ecCCHHHHHHHHHHHH
Confidence 4444444433 23344444444333221 1236788899998776 76 7777665555543
No 363
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=34.13 E-value=60 Score=25.83 Aligned_cols=58 Identities=9% Similarity=0.044 Sum_probs=39.7
Q ss_pred CcEEEEEeCCcchhhhhhCCCcceeEEEEEeCCeEEEEEeCC-ChHHHHHHHHHHhhccC
Q 032496 77 SLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGA-NKPELQKKVAAAVDSVV 135 (139)
Q Consensus 77 ~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~i~~~~~~~~ 135 (139)
++.+..+-.++...+.. ++.+..|+.+++++|.....+... +.+...+.|.+++....
T Consensus 215 ~v~vr~~~d~q~~~~~~-l~~~~~~~~llfrnG~~q~l~~~~~s~~~y~~~I~~~lg~~~ 273 (606)
T KOG1731|consen 215 QVGVRARLDTQNFPLFG-LKPDNFPLALLFRNGEQQPLWPSSSSRSAYVKKIDDLLGDKN 273 (606)
T ss_pred CcceEEEecchhccccc-cCCCCchhhhhhcCCcccccccccccHHHHHHHHHHHhcCcc
Confidence 44433333334444444 788999999999999877666555 77788888888887643
No 364
>PTZ00151 translationally controlled tumor-like protein; Provisional
Probab=33.96 E-value=66 Score=21.29 Aligned_cols=42 Identities=21% Similarity=0.453 Sum_probs=21.4
Q ss_pred HHHHHhCCCcEEEE---EeCCcchhhhhhCCCcceeEEEEEeCCe
Q 032496 69 SELSEKYPSLMFLL---VDVDELVEFSTSWDIKATPTFFFLKDGQ 110 (139)
Q Consensus 69 ~~~~~~~~~v~~~~---vd~~~~~~~~~~~~v~~~Pt~~~~~~g~ 110 (139)
..+...+.+..|+. .|.+.--.+...-.-..+|.++++++|=
T Consensus 123 K~il~~Fkd~qFf~GeSmd~dgmv~l~~Yredg~tP~~~f~KdGL 167 (172)
T PTZ00151 123 KHILENFDDFEFYLGESLDCEAGLIYGYYKGEELAPRFVYIKDGL 167 (172)
T ss_pred HHHHHhcCCceEeecCCCCCCccEEEEeecCCCcceEEEEEcccc
Confidence 34444555677664 2222222221111123589999999883
No 365
>TIGR03765 ICE_PFL_4695 integrating conjugative element protein, PFL_4695 family. This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=32.89 E-value=65 Score=19.46 Aligned_cols=37 Identities=16% Similarity=0.237 Sum_probs=24.6
Q ss_pred HhHHHHHHhCCCcEEEEEeCCcchhhhhhCCCcceeEEEE
Q 032496 66 PFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFF 105 (139)
Q Consensus 66 ~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~ 105 (139)
..++.+....+++.+.-++ -.++++++++.-+|.++.
T Consensus 63 ~~l~~Lr~lapgl~l~P~s---gddLa~rL~l~hYPvLit 99 (105)
T TIGR03765 63 AALQRLRALAPGLPLLPVS---GDDLAERLGLRHYPVLIT 99 (105)
T ss_pred HHHHHHHHHcCCCcccCCC---HHHHHHHhCCCcccEEEe
Confidence 4445555445555554444 457889999999998875
No 366
>COG3581 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.73 E-value=1.2e+02 Score=23.00 Aligned_cols=59 Identities=8% Similarity=0.103 Sum_probs=33.0
Q ss_pred eEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhh--hHhHHHHHHhC--CCcEEEEEeC
Q 032496 26 VSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMI--APFFSELSEKY--PSLMFLLVDV 85 (139)
Q Consensus 26 ~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~--~~~l~~~~~~~--~~v~~~~vd~ 85 (139)
.|.+.+.-++-..+...........+ |-...|+.|+.- -..++++.++. ++|.++.+|.
T Consensus 50 ~P~~ltiG~lid~~~~g~~d~~n~~v-lmt~TgGpCRfgnYi~~~rkaLk~aG~~~V~visLn~ 112 (420)
T COG3581 50 LPAILTIGQLIDAIESGEYDIENDAV-LMTQTGGPCRFGNYIELLRKALKDAGFRDVPVISLNS 112 (420)
T ss_pred chhhhhHHHHHHHHHhCCccccccEE-EEecCCCCcchhhHHHHHHHHHHHcCCCCCcEEEeec
Confidence 34444554444444322111123333 444599999964 45666666664 4799999994
No 367
>TIGR03757 conj_TIGR03757 integrating conjugative element protein, PFL_4709 family. Members of this protein belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=32.13 E-value=1.2e+02 Score=18.53 Aligned_cols=15 Identities=7% Similarity=0.089 Sum_probs=12.9
Q ss_pred hhhCCCcceeEEEEE
Q 032496 92 STSWDIKATPTFFFL 106 (139)
Q Consensus 92 ~~~~~v~~~Pt~~~~ 106 (139)
+-.|||..+|.+++.
T Consensus 77 Aw~lGi~k~PAVV~D 91 (113)
T TIGR03757 77 AWQLGVTKIPAVVVD 91 (113)
T ss_pred HHHcCCccCCEEEEc
Confidence 457899999999995
No 368
>KOG0854 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=32.07 E-value=1.6e+02 Score=19.81 Aligned_cols=42 Identities=21% Similarity=0.367 Sum_probs=32.1
Q ss_pred CCEEEEEEe--CCCChhhhhhhHhHHHHHHhCC--CcEEEEEeCCc
Q 032496 46 GKIVIANFS--ATWCGPCRMIAPFFSELSEKYP--SLMFLLVDVDE 87 (139)
Q Consensus 46 ~k~vlv~f~--~~~C~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~ 87 (139)
+....|.|. +..-|.|......+.+++-+|. +++.+.+.+|.
T Consensus 31 gdSW~vLFSHPaDFTPVCTTElgr~Akl~pEF~KRnvKlialS~d~ 76 (224)
T KOG0854|consen 31 GDSWGVLFSHPADFTPVCTTELGRFAKLAPEFDKRNVKLIALSVDD 76 (224)
T ss_pred ccceEEEecCcccCCcchhHHHHHHHhhChhhhhcCceEEEeehhh
Confidence 444556676 5678999999999988888875 58888888763
No 369
>COG0678 AHP1 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=31.41 E-value=53 Score=21.35 Aligned_cols=32 Identities=28% Similarity=0.517 Sum_probs=20.2
Q ss_pred hCCCEEEEEEeCC--CChhhhh-hhHhHHHHHHhCC
Q 032496 44 KEGKIVIANFSAT--WCGPCRM-IAPFFSELSEKYP 76 (139)
Q Consensus 44 ~~~k~vlv~f~~~--~C~~C~~-~~~~l~~~~~~~~ 76 (139)
.++|.|+| |..| ..|.|.. ..|-+.++...+.
T Consensus 35 f~gKkVvl-f~lPGAFTPTCS~~hlPgY~~~~d~f~ 69 (165)
T COG0678 35 FKGKKVVL-FSLPGAFTPTCSSSHLPGYLELADEFK 69 (165)
T ss_pred cCCCEEEE-EeCCCccCCCcccccCccHHHHHHHHH
Confidence 56776655 6644 4566665 6777777766653
No 370
>PRK13738 conjugal transfer pilus assembly protein TraW; Provisional
Probab=30.18 E-value=41 Score=23.02 Aligned_cols=28 Identities=14% Similarity=0.198 Sum_probs=21.1
Q ss_pred CcchhhhhhCCCcceeEEEEE-eCCeEEE
Q 032496 86 DELVEFSTSWDIKATPTFFFL-KDGQQVD 113 (139)
Q Consensus 86 ~~~~~~~~~~~v~~~Pt~~~~-~~g~~~~ 113 (139)
|....+.++|+|..+|+++.- .+|+...
T Consensus 170 dQ~G~Lt~rF~I~~VPAvV~~~q~G~~l~ 198 (209)
T PRK13738 170 DQNGVLCQRFGIDQVPARVSAVPGGRFLK 198 (209)
T ss_pred cCcchHHHhcCCeeeceEEEEcCCCCEEE
Confidence 445668999999999999873 5666543
No 371
>PHA02151 hypothetical protein
Probab=29.89 E-value=30 Score=22.55 Aligned_cols=11 Identities=27% Similarity=0.848 Sum_probs=9.4
Q ss_pred EEEEEeCCCCh
Q 032496 49 VIANFSATWCG 59 (139)
Q Consensus 49 vlv~f~~~~C~ 59 (139)
-.|+||..||.
T Consensus 206 ~~v~fy~kwct 216 (217)
T PHA02151 206 RYVHFYKKWCT 216 (217)
T ss_pred eEEEEehhhcc
Confidence 37899999995
No 372
>TIGR02652 conserved hypothetical protein TIGR02652, cyanobacterial. Members of this family of conserved hypothetical proteins are found, so far, only in the Cyanobacteria. Members are about 170 amino acids long and share a motif CxxCx(14)CxxH near the amino end.
Probab=29.56 E-value=20 Score=22.79 Aligned_cols=13 Identities=31% Similarity=0.654 Sum_probs=11.3
Q ss_pred CCChhhhhhhHhH
Q 032496 56 TWCGPCRMIAPFF 68 (139)
Q Consensus 56 ~~C~~C~~~~~~l 68 (139)
-.||+|+.+.|.|
T Consensus 10 i~CPhCRQ~ipAL 22 (163)
T TIGR02652 10 IRCPHCRQNIPAL 22 (163)
T ss_pred CcCchhhcccchh
Confidence 4799999999877
No 373
>PLN02378 glutathione S-transferase DHAR1
Probab=29.53 E-value=1.8e+02 Score=19.47 Aligned_cols=65 Identities=12% Similarity=0.059 Sum_probs=37.6
Q ss_pred CCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcc-hhhhhhCCCcceeEEEEEeCCeEEEEEeCCChHHHHHHHHHH
Q 032496 56 TWCGPCRMIAPFFSELSEKYPSLMFLLVDVDEL-VEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKVAAA 130 (139)
Q Consensus 56 ~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~-~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~l~~~i~~~ 130 (139)
.+|++|+++.-.++...- .+.+..+|.... +++.+......+|++.. +|..+. ....|...|.+.
T Consensus 18 ~~~p~~~rv~~~L~e~gl---~~e~~~v~~~~~~~~~l~inP~G~VPvL~~--~~~~l~-----ES~aI~~YL~~~ 83 (213)
T PLN02378 18 GDCPFSQRALLTLEEKSL---TYKIHLINLSDKPQWFLDISPQGKVPVLKI--DDKWVT-----DSDVIVGILEEK 83 (213)
T ss_pred CCCcchHHHHHHHHHcCC---CCeEEEeCcccCCHHHHHhCCCCCCCEEEE--CCEEec-----CHHHHHHHHHHh
Confidence 349999999877755522 355566666432 34555555678998853 443322 334455555443
No 374
>PF09654 DUF2396: Protein of unknown function (DUF2396); InterPro: IPR013472 These conserved hypothetical proteins have so far been found only in the Cyanobacteria. They are about 170 amino acids long and contain a CxxCx(14)CxxH motif near the N terminus.
Probab=29.19 E-value=20 Score=22.75 Aligned_cols=13 Identities=31% Similarity=0.682 Sum_probs=11.2
Q ss_pred CCChhhhhhhHhH
Q 032496 56 TWCGPCRMIAPFF 68 (139)
Q Consensus 56 ~~C~~C~~~~~~l 68 (139)
-.||+|+.+.|.|
T Consensus 7 i~CPhCRq~ipAL 19 (161)
T PF09654_consen 7 IQCPHCRQTIPAL 19 (161)
T ss_pred CcCchhhcccchh
Confidence 3699999999877
No 375
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=28.36 E-value=86 Score=22.92 Aligned_cols=37 Identities=16% Similarity=0.303 Sum_probs=28.9
Q ss_pred EEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCc
Q 032496 48 IVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDE 87 (139)
Q Consensus 48 ~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~ 87 (139)
.+||.+ .|+.|++....|+.+...-..+.++.+|+..
T Consensus 78 ~~lIEL---GsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~ 114 (319)
T TIGR03439 78 SMLVEL---GSGNLRKVGILLEALERQKKSVDYYALDVSR 114 (319)
T ss_pred CEEEEE---CCCchHHHHHHHHHHHhcCCCceEEEEECCH
Confidence 356655 6888999999998887555568999999985
No 376
>PF14639 YqgF: Holliday-junction resolvase-like of SPT6 ; PDB: 3PSI_A 3PSF_A.
Probab=27.87 E-value=1.6e+02 Score=18.84 Aligned_cols=41 Identities=12% Similarity=0.122 Sum_probs=23.0
Q ss_pred hCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCC------CcEEEEEeC
Q 032496 44 KEGKIVIANFSATWCGPCRMIAPFFSELSEKYP------SLMFLLVDV 85 (139)
Q Consensus 44 ~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~------~v~~~~vd~ 85 (139)
.+.+|-+|...+ ++..|+.....+.++..+.. .+.++.+|-
T Consensus 60 ~~~kP~vI~v~g-~~~~s~~l~~~v~~~v~~~~~~~~~~~i~V~~v~~ 106 (150)
T PF14639_consen 60 EKHKPDVIAVGG-NSRESRKLYDDVRDIVEELDEDEQMPPIPVVIVDD 106 (150)
T ss_dssp HHH--SEEEE---SSTHHHHHHHHHHHHHHHTTB-TTS-B--EEE---
T ss_pred HHcCCeEEEEcC-CChhHHHHHHHHHHHHHHhhhcccCCCceEEEECc
Confidence 445666666654 78999999998888877654 255555543
No 377
>PF13103 TonB_2: TonB C terminal; PDB: 1LR0_A.
Probab=25.90 E-value=1.3e+02 Score=16.64 Aligned_cols=35 Identities=20% Similarity=0.375 Sum_probs=20.9
Q ss_pred EEEEEeCCeEEEE-EeCC-ChHHHHHHHHHHhhccCC
Q 032496 102 TFFFLKDGQQVDK-LVGA-NKPELQKKVAAAVDSVVP 136 (139)
Q Consensus 102 t~~~~~~g~~~~~-~~g~-~~~~l~~~i~~~~~~~~~ 136 (139)
.+.+..+|+++.. .... ....+.+.+.+.+....+
T Consensus 31 ~i~i~~dG~v~~~~i~~sSG~~~~D~av~~ai~~~~p 67 (85)
T PF13103_consen 31 RITIDPDGRVISVRIVKSSGNPAFDAAVRRAIRRASP 67 (85)
T ss_dssp EEEE-TTSBEEEEEEEE--S-HHHHHHHHHHHHHH-B
T ss_pred EEEECCCCCEEEEEEecCCCCHHHHHHHHHHHHHcCC
Confidence 4555589998543 2233 677888888887765543
No 378
>cd06353 PBP1_BmpA_Med_like Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Med, a cell-surface localized protein, which regulates the competence transcription factor gene comK in Bacillus subtilis, lacks the DNA binding domain when compared with structures of transcription regulators from the LacI family. Nevertheless, Med has significant overall sequence homology to various periplasmic substrate-binding proteins. Moreover, the structure of Med shows a striking similarity to PnrA, a periplasmic nucleoside binding protein of an ATP-binding cassette transport system. Members of this group contain the type I periplasmic sugar-binding protein-like fold.
Probab=25.87 E-value=2.3e+02 Score=19.66 Aligned_cols=48 Identities=13% Similarity=0.044 Sum_probs=31.0
Q ss_pred hhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCC
Q 032496 32 KDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVD 86 (139)
Q Consensus 32 ~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~ 86 (139)
.+++.+.+.....++--+++ . .-..+.+.+.+++++||++.|+.+|..
T Consensus 43 ~~~~~~~i~~~~~~g~dlIi-~------~g~~~~~~~~~vA~~~p~~~F~~~d~~ 90 (258)
T cd06353 43 GADAERVLRELAAQGYDLIF-G------TSFGFMDAALKVAKEYPDVKFEHCSGY 90 (258)
T ss_pred hHhHHHHHHHHHHcCCCEEE-E------CchhhhHHHHHHHHHCCCCEEEECCCC
Confidence 45555666544344422222 2 445677888999999999999988763
No 379
>cd07973 Spt4 Transcription elongation factor Spt4. Spt4 is a transcription elongation factor. Three transcription-elongation factors Spt4, Spt5, and Spt6, are conserved among eukaryotes and are essential for transcription via the modulation of chromatin structure. It is known that Spt4, Spt5, and Spt6 are general transcription-elongation factors, controlling transcription both positively and negatively in important regulatory and developmental roles. Spt4 functions entirely in the context of the Spt4-Spt5 heterodimer and it has been found only as a complex to Spt5 in Yeast and Human. Spt4 is a small protein that has zinc finger at the N-terminus. Spt5 is a large protein that has several interesting structural features of an acidic N-terminus, a single NGN domain, five or six KOW domains, and a set of simple C-termianl repeats. Spt4 binds to Spt5 NGN domain. Unlike Spt5, Spt4 is not essential for viability in yeast, however Spt4 is critical for normal function of the Spt4-Spt5 compl
Probab=25.63 E-value=1.3e+02 Score=17.95 Aligned_cols=69 Identities=14% Similarity=0.203 Sum_probs=36.0
Q ss_pred EeCCCChhhhhhhH---h----HHHHHHhCCCcEEEEEeCCcchhhhhhCCCcceeEEEEEeCCeEEEEEeCCChHHHHH
Q 032496 53 FSATWCGPCRMIAP---F----FSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQK 125 (139)
Q Consensus 53 f~~~~C~~C~~~~~---~----l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~l~~ 125 (139)
|....|+.|..+.. . ....-..|.++..+ +| .+..++++..++.. +..|...-...|.-++++.+
T Consensus 18 f~~~gCpnC~~~l~~~g~~~~v~~~tT~~f~G~i~i-~d-P~~SwVAk~l~i~~------~~pG~YAi~V~g~lp~~i~~ 89 (98)
T cd07973 18 FERDGCPNCEGYLDMKGNHERVYDCTSPNFEGIIAL-MD-PEKSWVARWQRIDK------FVPGIYAISVSGRLPEDIVE 89 (98)
T ss_pred ccCCCCCCCcchhccCCCccccccccCCCcceEEEE-EC-CchhHHHHHhCCCC------CCCCeEEEEecCcCCHHHHH
Confidence 77889999963321 1 11122333344322 33 34567788888852 12333333444665666666
Q ss_pred HHHH
Q 032496 126 KVAA 129 (139)
Q Consensus 126 ~i~~ 129 (139)
.++.
T Consensus 90 ~l~~ 93 (98)
T cd07973 90 ELES 93 (98)
T ss_pred HHHH
Confidence 6554
No 380
>PF14421 LmjF365940-deam: A distinct subfamily of CDD/CDA-like deaminases
Probab=25.07 E-value=1.1e+02 Score=20.55 Aligned_cols=28 Identities=21% Similarity=0.428 Sum_probs=19.2
Q ss_pred CChhhhhhhHhHHHHHHhCCCcEEEEEeCCc
Q 032496 57 WCGPCRMIAPFFSELSEKYPSLMFLLVDVDE 87 (139)
Q Consensus 57 ~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~ 87 (139)
-|+.|..++..+ ++..|++.++..+-..
T Consensus 156 PCGaC~ewL~KI---Ae~np~f~v~mFd~t~ 183 (193)
T PF14421_consen 156 PCGACKEWLRKI---AEANPDFRVYMFDDTR 183 (193)
T ss_pred cchHHHHHHHHH---HHhCCCeEEEEecCCC
Confidence 588888776555 4456778888776543
No 381
>PHA02131 hypothetical protein
Probab=24.92 E-value=1.2e+02 Score=15.99 Aligned_cols=27 Identities=11% Similarity=0.268 Sum_probs=19.3
Q ss_pred cceeEEEEEeCCeEEEEEeCCChHHHH
Q 032496 98 KATPTFFFLKDGQQVDKLVGANKPELQ 124 (139)
Q Consensus 98 ~~~Pt~~~~~~g~~~~~~~g~~~~~l~ 124 (139)
.++-.++.|++|+++......+..++.
T Consensus 27 ~g~~c~imfk~~~v~dctfk~dtaqfr 53 (70)
T PHA02131 27 FGISCWIMFKNDQVIDCTFKNDTAQFR 53 (70)
T ss_pred cceEEEEEEcCCCEEEeeecCcHHHHh
Confidence 456789999999999875555444443
No 382
>PF02484 Rhabdo_NV: Rhabdovirus Non-virion protein; InterPro: IPR003490 Infectious hematopoietic necrosis virus (IHNV) is a member of the family Rhabdoviridae. The non-virion protein (NV) is coded for by one of the six genes of the IHNV genome [], but is absent in vesiculovirus-like rhabdovirus [].
Probab=24.24 E-value=1.3e+02 Score=17.64 Aligned_cols=40 Identities=18% Similarity=0.126 Sum_probs=27.9
Q ss_pred hhCCCcceeEEEEEeCCeEEEEEeCC-ChHHHHHHHHHHhh
Q 032496 93 TSWDIKATPTFFFLKDGQQVDKLVGA-NKPELQKKVAAAVD 132 (139)
Q Consensus 93 ~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~i~~~~~ 132 (139)
-+|.+...-.=++|.+|+++++..|- ....+-..+..++.
T Consensus 17 lryk~~va~hgflfddg~~vw~e~~d~~w~rl~~vv~al~s 57 (111)
T PF02484_consen 17 LRYKNEVARHGFLFDDGDIVWSEDDDETWNRLCDVVNALIS 57 (111)
T ss_pred HHHHhhccccceEecCCcEEEecCChHHHHHHHHHHHHHHh
Confidence 35666555566788999999987776 66666666665543
No 383
>PF07293 DUF1450: Protein of unknown function (DUF1450); InterPro: IPR009910 This entry consists of several hypothetical bacterial proteins of around 80 residues in length representing two families. Members contain four highly conserved cysteine residues and their function is unknown.
Probab=23.24 E-value=1.6e+02 Score=16.74 Aligned_cols=59 Identities=15% Similarity=0.246 Sum_probs=36.6
Q ss_pred hHhHHHHHHhCCCcEEEEEeCCcchhhhhhCCCcceeEEEEEeCCeEEEEEeCCChHHHHHHHHHHhhcc
Q 032496 65 APFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKVAAAVDSV 134 (139)
Q Consensus 65 ~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~l~~~i~~~~~~~ 134 (139)
...++.+. +.|++.++..++-..=..+. ..|-.++ ||+++. +.+.++|.+.|.+.++..
T Consensus 17 ~~~~~~Le-~~p~~~Vie~gCl~~Cg~C~-----~~pFAlV--nG~~V~---A~t~eeL~~kI~~~i~e~ 75 (78)
T PF07293_consen 17 DQVYEKLE-KDPDIDVIEYGCLSYCGPCA-----KKPFALV--NGEIVA---AETAEELLEKIKEKIEEN 75 (78)
T ss_pred HHHHHHHh-cCCCccEEEcChhhhCcCCC-----CCccEEE--CCEEEe---cCCHHHHHHHHHHHHhcc
Confidence 33455554 45888877777654332222 1233333 676655 669999999999888754
No 384
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=22.59 E-value=78 Score=16.98 Aligned_cols=14 Identities=36% Similarity=0.800 Sum_probs=11.3
Q ss_pred eeEEEEEeCCeEEE
Q 032496 100 TPTFFFLKDGQQVD 113 (139)
Q Consensus 100 ~Pt~~~~~~g~~~~ 113 (139)
.|++.+++||+.+.
T Consensus 12 ~P~v~W~kdg~~l~ 25 (67)
T cd05863 12 PPEFQWYKDGKLIS 25 (67)
T ss_pred CCEEEEEECCEECc
Confidence 46788899998875
No 385
>KOG2990 consensus C2C2-type Zn-finger protein [Function unknown]
Probab=22.48 E-value=82 Score=22.70 Aligned_cols=21 Identities=24% Similarity=0.707 Sum_probs=15.3
Q ss_pred CCEEEEEEeCC---CChhhhhhhH
Q 032496 46 GKIVIANFSAT---WCGPCRMIAP 66 (139)
Q Consensus 46 ~k~vlv~f~~~---~C~~C~~~~~ 66 (139)
....||-|-.| ||..|..+..
T Consensus 40 ~gilvIRFEMPynIWC~gC~nhIg 63 (317)
T KOG2990|consen 40 QGILVIRFEMPYNIWCDGCKNHIG 63 (317)
T ss_pred cceEEEEEecccchhhccHHHhhh
Confidence 45778888655 9999987654
No 386
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=22.39 E-value=2e+02 Score=20.44 Aligned_cols=36 Identities=14% Similarity=0.272 Sum_probs=18.7
Q ss_pred EEEEEEeCCCChhhh-hhhHhHHHHHHhCCCcEEEEE
Q 032496 48 IVIANFSATWCGPCR-MIAPFFSELSEKYPSLMFLLV 83 (139)
Q Consensus 48 ~vlv~f~~~~C~~C~-~~~~~l~~~~~~~~~v~~~~v 83 (139)
.+|+-|.+++-.... .....-+++.+.||+..+...
T Consensus 3 IllvsFGTs~~~ar~~ti~~ie~~~~~~fp~~~V~~A 39 (262)
T PF06180_consen 3 ILLVSFGTSYPEAREKTIDAIEKAVREAFPDYDVRRA 39 (262)
T ss_dssp EEEEE---S-CCCCHHHHHHHHHHHHHCSTTSEEEEE
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHHHHHCCCCcEEEE
Confidence 455666666666555 444455666666776555544
No 387
>COG4752 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.81 E-value=1.1e+02 Score=19.81 Aligned_cols=17 Identities=24% Similarity=0.413 Sum_probs=12.3
Q ss_pred hCCCEEEEEEeCCCChh
Q 032496 44 KEGKIVIANFSATWCGP 60 (139)
Q Consensus 44 ~~~k~vlv~f~~~~C~~ 60 (139)
..+||+++.|.+-|--+
T Consensus 131 e~dkp~LilfGTGwGlp 147 (190)
T COG4752 131 ERDKPWLILFGTGWGLP 147 (190)
T ss_pred hcCCcEEEEecCCCCCC
Confidence 45788888888777654
No 388
>cd06537 CIDE_N_B CIDE_N domain of CIDE-B proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45 and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=21.57 E-value=1.2e+02 Score=17.35 Aligned_cols=23 Identities=22% Similarity=0.257 Sum_probs=17.2
Q ss_pred hhhhCCCcceeEEEEEeCCeEEE
Q 032496 91 FSTSWDIKATPTFFFLKDGQQVD 113 (139)
Q Consensus 91 ~~~~~~v~~~Pt~~~~~~g~~~~ 113 (139)
.++.+++...+++++..+|.++.
T Consensus 30 ~~~~L~~~~~~~lvLeeDGT~Vd 52 (81)
T cd06537 30 ALETLLLSGVLTLVLEEDGTAVD 52 (81)
T ss_pred HHHHhCCCCceEEEEecCCCEEc
Confidence 35567777667788889998885
No 389
>COG5441 Uncharacterized conserved protein [Function unknown]
Probab=21.45 E-value=2.2e+02 Score=21.02 Aligned_cols=88 Identities=15% Similarity=0.164 Sum_probs=52.2
Q ss_pred CEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchh----hhhhCCCcceeEEEEEe-CCeEEEEEeCC---
Q 032496 47 KIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVE----FSTSWDIKATPTFFFLK-DGQQVDKLVGA--- 118 (139)
Q Consensus 47 k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~----~~~~~~v~~~Pt~~~~~-~g~~~~~~~g~--- 118 (139)
-.=+|+||++..-+-+--.. -++...+.+..+....+++.. +..+++...=|.-+++. .|-...-..|.
T Consensus 274 AlDMVnf~a~~tVPeqyr~R---~~~~HN~~vtlmrtspee~~ai~rwig~kLn~c~gpvrFliPe~GvsalD~~G~pf~ 350 (401)
T COG5441 274 ALDMVNFGAPETVPEQYRDR---LFYAHNPQVTLMRTSPEECRAIGRWIGAKLNLCAGPVRFLIPEGGVSALDAPGQPFH 350 (401)
T ss_pred ceeeecCCCcccChHHhcCc---chhhcCCceeEEeCCHHHHHHHHHHHHHHHhhccCceEEEecCCCcccccCCCCcCC
Confidence 34478888876554222111 123344568888887777654 45577777888766664 44333333333
Q ss_pred ChHHHHHHHHHHhhccCCC
Q 032496 119 NKPELQKKVAAAVDSVVPS 137 (139)
Q Consensus 119 ~~~~l~~~i~~~~~~~~~~ 137 (139)
+++.+..+++.+-....+.
T Consensus 351 dpeA~aa~~~ale~tv~~t 369 (401)
T COG5441 351 DPEADAALFEALERTVSGT 369 (401)
T ss_pred ChHHHHHHHHHHHHhhccc
Confidence 7777777777776555444
No 390
>PF07366 SnoaL: SnoaL-like polyketide cyclase; InterPro: IPR009959 This domain is found in SnoaL [] a polyketide cyclase involved in nogalamycin biosynthesis. This domain was formerly known as DUF1486. It adopts a distorted alpha-beta barrel fold []. Structural data together with site-directed mutagenesis experiments have shown that SnoaL has a different mechanism to that of the classical aldolase for catalysing intramolecular aldol condensation [].; PDB: 2GEY_C 3F9S_A 2GEX_A 3EHC_B 2F99_D 2F98_D 1SJW_A 3K0Z_B.
Probab=21.25 E-value=2e+02 Score=17.11 Aligned_cols=63 Identities=25% Similarity=0.454 Sum_probs=34.4
Q ss_pred hhhhHhHHHHHHhCCCcEEEEEeCCcchh-hhhhCC--------Cccee-----------EEEEEeCCeEEEEEeCCChH
Q 032496 62 RMIAPFFSELSEKYPSLMFLLVDVDELVE-FSTSWD--------IKATP-----------TFFFLKDGQQVDKLVGANKP 121 (139)
Q Consensus 62 ~~~~~~l~~~~~~~~~v~~~~vd~~~~~~-~~~~~~--------v~~~P-----------t~~~~~~g~~~~~~~g~~~~ 121 (139)
..+...+..+...+|+..+...++-...+ .+-++- ..++| +++-+++|+++..+.-.+.-
T Consensus 41 ~~~~~~~~~~~~afPD~~~~i~~~~~~gd~v~~~~~~~Gth~g~~~g~~ptgk~v~~~~~~~~~~~~gkI~e~~~~~D~~ 120 (126)
T PF07366_consen 41 EGFKEFLKELRAAFPDLRFEIEDVVAEGDRVAVRWTFTGTHTGEFMGIPPTGKPVEFRGMSIFRFEDGKIVEEWVYFDEL 120 (126)
T ss_dssp HHHHHHHHHHHHHSTTTEEEEEEEEEETTEEEEEEEEEEEESSEBTTBE-TTEEEEEEEEEEEEEETTEEEEEEEEECHH
T ss_pred HHHHHHHHHHHHHCCCCEEEEEEEEEECCEEEEEEEEEEeecCCcCCcCCCCCEEEEEEEEEEEEECCEEEEEEEEECHH
Confidence 35677788888999986654433321111 111110 11222 45666899999877655544
Q ss_pred HHH
Q 032496 122 ELQ 124 (139)
Q Consensus 122 ~l~ 124 (139)
.+.
T Consensus 121 ~~~ 123 (126)
T PF07366_consen 121 SLL 123 (126)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 391
>cd06538 CIDE_N_FSP27 CIDE_N domain of FSP27 proteins. The CIDE-N (cell death-inducing DFF45-like effector, N-terminal) domain is found in the FSP27/CIDE-C protein, which has been identified as a n adipocyte lipid droplet protein that negatively regulates lipolysis and promotes triglyceride accumulation. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. The CIDE-N domain of FSP27 is sufficient to increase apoptosis in vitro when overexpressed.
Probab=21.21 E-value=1.3e+02 Score=17.19 Aligned_cols=23 Identities=17% Similarity=0.280 Sum_probs=17.2
Q ss_pred hhhhCCCcceeEEEEEeCCeEEE
Q 032496 91 FSTSWDIKATPTFFFLKDGQQVD 113 (139)
Q Consensus 91 ~~~~~~v~~~Pt~~~~~~g~~~~ 113 (139)
.++.|++...+++++..+|.++.
T Consensus 30 ~~~~l~l~~~~~lvL~eDGT~Vd 52 (79)
T cd06538 30 VLDALLLDCISSLVLDEDGTGVD 52 (79)
T ss_pred HHHHcCCCCccEEEEecCCcEEc
Confidence 46678886656777779998874
No 392
>COG4312 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.14 E-value=3e+02 Score=19.25 Aligned_cols=41 Identities=12% Similarity=0.351 Sum_probs=26.4
Q ss_pred CCEEEEEEe-----CCCChhhhhhhHhHHHHHHhC--CCcEEEEEeCC
Q 032496 46 GKIVIANFS-----ATWCGPCRMIAPFFSELSEKY--PSLMFLLVDVD 86 (139)
Q Consensus 46 ~k~vlv~f~-----~~~C~~C~~~~~~l~~~~~~~--~~v~~~~vd~~ 86 (139)
++.+|-.|. ...|+.|..+...+.-....+ .++.++.|...
T Consensus 74 sqLIvYhfmF~P~~~~~C~gCS~laD~~dGa~~HL~~~dv~lv~VsRA 121 (247)
T COG4312 74 SQLIVYHFMFGPGWDHGCPGCSFLADHWDGAVAHLEHHDVTLVAVSRA 121 (247)
T ss_pred ceEEEEEEecCCCccCCCCchhhHHhhhhhhhhhHhhcCceEEEEecC
Confidence 345544442 347999999988885443333 26888887764
No 393
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=20.77 E-value=1.7e+02 Score=21.76 Aligned_cols=66 Identities=15% Similarity=0.171 Sum_probs=41.3
Q ss_pred CCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhhhhhCCCcceeEEEEEeCCeEEE
Q 032496 46 GKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVD 113 (139)
Q Consensus 46 ~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~ 113 (139)
+.+-|-..|.-.|..|......-.+-+++-+++-+=...-|-+-..+.=++-.+ .+.+..+|++|.
T Consensus 65 ~dpql~~~yrG~Ck~C~~erk~a~eQa~k~~~vFvPeC~~DG~f~qvQCh~ytG--CWCvtp~GrPIs 130 (421)
T KOG4578|consen 65 GDPQLSLKYRGSCKACLEERKFAREQAEKDPGVFVPECRKDGNFAQVQCHGYTG--CWCVTPQGRPIS 130 (421)
T ss_pred CCCceeEEecCcHHHHHHHHHHHHHhhhcCCceecccccCCCCeeeEEeccccc--eEEeCCCCcccC
Confidence 567788889999999999888776666665544322333333333333444445 566667777653
No 394
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....
Probab=20.43 E-value=3.4e+02 Score=19.55 Aligned_cols=97 Identities=14% Similarity=0.152 Sum_probs=50.2
Q ss_pred hhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcc-----hhhhhhCCCcceeEEEEE
Q 032496 32 KDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDEL-----VEFSTSWDIKATPTFFFL 106 (139)
Q Consensus 32 ~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~-----~~~~~~~~v~~~Pt~~~~ 106 (139)
.+.|...+........-+...++.+.|..-..=...+.++++.. ++-++.-+.... -++++.++. |++.+-
T Consensus 167 ~~~~~~i~~~l~~~~~~~~~~~~nTIC~aT~~RQ~a~~~La~~v-D~miVIGg~~SsNT~kL~eia~~~~~---~t~~Ie 242 (281)
T PF02401_consen 167 VEKFEEIVEALKKRFPELEGPVFNTICYATQNRQEAARELAKEV-DAMIVIGGKNSSNTRKLAEIAKEHGK---PTYHIE 242 (281)
T ss_dssp HHHHHHHHHHHHHHSTCEE-SCC-S--CHHHHHHHHHHHHHCCS-SEEEEES-TT-HHHHHHHHHHHHCTT---CEEEES
T ss_pred HHHHHHHHHHHHHhCccccCCCCCCCCHhHHHHHHHHHHHHhhC-CEEEEecCCCCccHHHHHHHHHHhCC---CEEEeC
Confidence 44555544444334444444588888888777777777777653 433332222221 235555544 555553
Q ss_pred ----------eCCeEEEEEeCC-ChHHHHHHHHHHhh
Q 032496 107 ----------KDGQQVDKLVGA-NKPELQKKVAAAVD 132 (139)
Q Consensus 107 ----------~~g~~~~~~~g~-~~~~l~~~i~~~~~ 132 (139)
++.+.+....|. +++.+.+.+...+.
T Consensus 243 ~~~el~~~~l~~~~~VGItaGASTP~~ii~eVi~~l~ 279 (281)
T PF02401_consen 243 TADELDPEWLKGVKKVGITAGASTPDWIIEEVIDRLE 279 (281)
T ss_dssp SGGG--HHHHTT-SEEEEEE-TTS-HHHHHHHHHHHH
T ss_pred CccccCHhHhCCCCEEEEEccCCCCHHHHHHHHHHHh
Confidence 244566777788 88888877766654
No 395
>PF04723 GRDA: Glycine reductase complex selenoprotein A; InterPro: IPR006812 Found in clostridia, this protein contains one active site selenocysteine and catalyses the reductive deamination of glycine, which is coupled to the esterification of orthophosphate resulting in the formation of ATP []. A member of this family may also exist in Treponema denticola [].; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=20.21 E-value=1.3e+02 Score=19.25 Aligned_cols=34 Identities=29% Similarity=0.398 Sum_probs=24.7
Q ss_pred EEEEeCCCChhhhhh-------hHhHHHHHHhCCCcEEEEE
Q 032496 50 IANFSATWCGPCRMI-------APFFSELSEKYPSLMFLLV 83 (139)
Q Consensus 50 lv~f~~~~C~~C~~~-------~~~l~~~~~~~~~v~~~~v 83 (139)
=|.|.++-|-.|... ...+++++++|+.-+++.+
T Consensus 32 evvfs~TeCFVctaagaMDLEnQ~rvk~~aEk~g~enlvVv 72 (150)
T PF04723_consen 32 EVVFSSTECFVCTAAGAMDLENQQRVKDLAEKYGAENLVVV 72 (150)
T ss_pred eEEEEeeeEEEecccccccHHHHHHHHHHHHhcCCccEEEE
Confidence 356899999999854 4677889999985444433
No 396
>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism]
Probab=20.05 E-value=2.1e+02 Score=20.01 Aligned_cols=32 Identities=16% Similarity=0.443 Sum_probs=22.7
Q ss_pred CEEEEEEeCCCChhhhhhhHhH-HHHHHhCCCc
Q 032496 47 KIVIANFSATWCGPCRMIAPFF-SELSEKYPSL 78 (139)
Q Consensus 47 k~vlv~f~~~~C~~C~~~~~~l-~~~~~~~~~v 78 (139)
...+|.|.++.--.|......+ +++++++|+.
T Consensus 4 ailiVsFGTty~dtre~tIda~e~~va~efpDy 36 (265)
T COG4822 4 AILIVSFGTTYNDTRELTIDAIEEKVADEFPDY 36 (265)
T ss_pred eEEEEEcCCccchhHHhhHHHHHHHHHHhCccH
Confidence 3667888888877777665555 5677788763
Done!