BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032497
(139 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FRY|A Chain A, The Structure Of A Putative Signal-Transduction Protein
With Cbs Domains From Burkholderia Ambifaria Mc40-6
pdb|4FRY|B Chain B, The Structure Of A Putative Signal-Transduction Protein
With Cbs Domains From Burkholderia Ambifaria Mc40-6
Length = 157
Score = 77.0 bits (188), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 44/91 (48%), Positives = 63/91 (69%), Gaps = 6/91 (6%)
Query: 50 GFESTTISDILKAKGKGADGSWLWCTT-DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAG 108
G STT++ ILKAK G ++ T +D VYDA+K M + +GAL+VV + +AG
Sbjct: 3 GSMSTTVAQILKAKPDS--GRTIYTVTKNDFVYDAIKLMAEKGIGALLVV---DGDDIAG 57
Query: 109 IITERDYLRKIIVQGRSSKSTKVGDIMTEEV 139
I+TERDY RK+++Q RSSK+T+V +IMT +V
Sbjct: 58 IVTERDYARKVVLQERSSKATRVEEIMTAKV 88
>pdb|2RC3|A Chain A, Crystal Structure Of Cbs Domain, Ne2398
pdb|2RC3|B Chain B, Crystal Structure Of Cbs Domain, Ne2398
pdb|2RC3|C Chain C, Crystal Structure Of Cbs Domain, Ne2398
pdb|2RC3|D Chain D, Crystal Structure Of Cbs Domain, Ne2398
Length = 135
Score = 53.5 bits (127), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 52/85 (61%), Gaps = 7/85 (8%)
Query: 55 TISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERD 114
T+ +L+ KG + + DD+V++A++ M N+GAL+V+K + + GI+TERD
Sbjct: 7 TVKHLLQEKGH----TVVAIGPDDSVFNAMQKMAADNIGALLVMK---DEKLVGILTERD 59
Query: 115 YLRKIIVQGRSSKSTKVGDIMTEEV 139
+ RK + + K T+V +IMT +V
Sbjct: 60 FSRKSYLLDKPVKDTQVKEIMTRQV 84
>pdb|3GHD|A Chain A, Crystal Structure Of A Cystathionine Beta-Synthase Domain
Protein Fused To A Zn-Ribbon-Like Domain
pdb|3GHD|B Chain B, Crystal Structure Of A Cystathionine Beta-Synthase Domain
Protein Fused To A Zn-Ribbon-Like Domain
Length = 70
Score = 38.9 bits (89), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 36/60 (60%), Gaps = 3/60 (5%)
Query: 78 DTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTE 137
DTV K ++++ G+ VV E + G++TERD L K++ +G++ K KV +I T+
Sbjct: 9 DTVDRVAKILSRNKAGSAVVX---EGDEILGVVTERDILDKVVAKGKNPKEVKVEEIXTK 65
>pdb|3FHM|A Chain A, Crystal Structure Of The Cbs-Domain Containing Protein
Atu1752 From Agrobacterium Tumefaciens
pdb|3FHM|B Chain B, Crystal Structure Of The Cbs-Domain Containing Protein
Atu1752 From Agrobacterium Tumefaciens
pdb|3FHM|C Chain C, Crystal Structure Of The Cbs-Domain Containing Protein
Atu1752 From Agrobacterium Tumefaciens
pdb|3FHM|D Chain D, Crystal Structure Of The Cbs-Domain Containing Protein
Atu1752 From Agrobacterium Tumefaciens
Length = 165
Score = 37.0 bits (84), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 6/87 (6%)
Query: 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITE 112
+T + D+L KG+ + D ++ +A ++ H +GA+VV V GI TE
Sbjct: 23 ATFVKDLLDRKGR----DVVTVGPDVSIGEAAGTLHAHKIGAVVVTDA--DGVVLGIFTE 76
Query: 113 RDYLRKIIVQGRSSKSTKVGDIMTEEV 139
RD ++ + QG +S V MT+ V
Sbjct: 77 RDLVKAVAGQGAASLQQSVSVAMTKNV 103
>pdb|3TSB|A Chain A, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Bacillus Anthracis Str. Ames
pdb|3TSB|B Chain B, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Bacillus Anthracis Str. Ames
pdb|3TSD|A Chain A, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Bacillus Anthracis Str. Ames
Complexed With Xmp
pdb|3TSD|B Chain B, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Bacillus Anthracis Str. Ames
Complexed With Xmp
Length = 511
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 6/67 (8%)
Query: 72 LWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKV 131
+ T + VYDA M ++ + + VV +++ + GIIT RD +R I S K+
Sbjct: 124 FFLTPEHQVYDAEHLMGKYRISGVPVVNNLDERKLVGIITNRD-MRFI-----QDYSIKI 177
Query: 132 GDIMTEE 138
D+MT+E
Sbjct: 178 SDVMTKE 184
>pdb|2XED|A Chain A, Nocardia Farcinica Maleate Cis-Trans Isomerase C194s
Mutant With A Covalently Bound Succinylcysteine
Intermediate
pdb|2XED|B Chain B, Nocardia Farcinica Maleate Cis-Trans Isomerase C194s
Mutant With A Covalently Bound Succinylcysteine
Intermediate
pdb|2XED|C Chain C, Nocardia Farcinica Maleate Cis-Trans Isomerase C194s
Mutant With A Covalently Bound Succinylcysteine
Intermediate
pdb|2XED|D Chain D, Nocardia Farcinica Maleate Cis-Trans Isomerase C194s
Mutant With A Covalently Bound Succinylcysteine
Intermediate
Length = 273
Score = 32.0 bits (71), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 46/98 (46%), Gaps = 15/98 (15%)
Query: 21 QRIRLVNPMLRPVVSSRFESVSSARMEEHGFESTTISD--ILKAKGKGADGSWLWCTTDD 78
QR+ LV P +RP+ A +E GF TISD L+ AD + + C +
Sbjct: 147 QRVALVTPYMRPLAEKVV-----AYLEAEGF---TISDWRALEV----ADNTEVGCIPGE 194
Query: 79 TVYDAVKSMTQHNVGALVVVKPGEQKSVAGIIT-ERDY 115
V A +S+ V ALV+ + S+ + T ER++
Sbjct: 195 QVMAAARSLDLSEVDALVISCAVQMPSLPLVETAEREF 232
>pdb|2XEC|A Chain A, Nocardia Farcinica Maleate Cis-Trans Isomerase Bound To
Tris
pdb|2XEC|B Chain B, Nocardia Farcinica Maleate Cis-Trans Isomerase Bound To
Tris
pdb|2XEC|C Chain C, Nocardia Farcinica Maleate Cis-Trans Isomerase Bound To
Tris
pdb|2XEC|D Chain D, Nocardia Farcinica Maleate Cis-Trans Isomerase Bound To
Tris
Length = 273
Score = 32.0 bits (71), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 14/79 (17%)
Query: 21 QRIRLVNPMLRPVVSSRFESVSSARMEEHGFESTTISD--ILKAKGKGADGSWLWCTTDD 78
QR+ LV P +RP+ A +E GF TISD L+ AD + + C +
Sbjct: 147 QRVALVTPYMRPLAEKVV-----AYLEAEGF---TISDWRALEV----ADNTEVGCIPGE 194
Query: 79 TVYDAVKSMTQHNVGALVV 97
V A +S+ V ALV+
Sbjct: 195 QVMAAARSLDLSEVDALVI 213
>pdb|4ESY|A Chain A, Crystal Structure Of The Cbs Domain Of Cbs Domain
Containing Membrane Protein From Sphaerobacter
Thermophilus
Length = 170
Score = 31.2 bits (69), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 77 DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117
DDT+ K+ +H +G VV + + GIITE D+LR
Sbjct: 34 DDTLDAVAKTXLEHQIGCAPVVD--QNGHLVGIITESDFLR 72
>pdb|2EF7|A Chain A, Crystal Structure Of St2348, A Hypothetical Protein With
Cbs Domains From Sulfolobus Tokodaii Strain7
pdb|2EF7|B Chain B, Crystal Structure Of St2348, A Hypothetical Protein With
Cbs Domains From Sulfolobus Tokodaii Strain7
Length = 133
Score = 31.2 bits (69), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 9/51 (17%)
Query: 72 LWCTTDDTVYDAVKSMTQHNVGALVVV---KPGEQKSVAGIITERDYLRKI 119
+ T D + D K T+ N+G+++VV KP GIITERD ++ I
Sbjct: 15 ISVTKDAKLNDIAKVXTEKNIGSVIVVDGNKP------VGIITERDIVKAI 59
>pdb|4ESY|B Chain B, Crystal Structure Of The Cbs Domain Of Cbs Domain
Containing Membrane Protein From Sphaerobacter
Thermophilus
Length = 170
Score = 30.8 bits (68), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 77 DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117
DDT+ K+ +H +G VV + + GIITE D+LR
Sbjct: 34 DDTLDAVAKTXLEHQIGXAPVVD--QNGHLVGIITESDFLR 72
>pdb|3P6A|A Chain A, Crystal Structure Of The DhPH DOMAINS OF P115-Rhogef
(R399e Mutant)
pdb|3P6A|B Chain B, Crystal Structure Of The DhPH DOMAINS OF P115-Rhogef
(R399e Mutant)
Length = 377
Score = 30.0 bits (66), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 6/77 (7%)
Query: 34 VSSRFESVSSARMEEHGFESTTISDILKAKGKGADGSWL------WCTTDDTVYDAVKSM 87
V S F R +E G+ I D+L A+ GA+GSW +C+ + +K+
Sbjct: 81 VHSLFLDRLMKRRQESGYLIEEIGDVLLARFDGAEGSWFQKISSRFCSRQSFALEQLKAK 140
Query: 88 TQHNVGALVVVKPGEQK 104
+ + V+ E +
Sbjct: 141 QRKDPRFCAFVQEAESR 157
>pdb|3ODO|A Chain A, Crystal Structure Of The DhPH DOMAINS OF P115-Rhogef
pdb|3ODO|B Chain B, Crystal Structure Of The DhPH DOMAINS OF P115-Rhogef
Length = 375
Score = 30.0 bits (66), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 6/77 (7%)
Query: 34 VSSRFESVSSARMEEHGFESTTISDILKAKGKGADGSWL------WCTTDDTVYDAVKSM 87
V S F R +E G+ I D+L A+ GA+GSW +C+ + +K+
Sbjct: 79 VHSLFLDRLMKRRQESGYLIEEIGDVLLARFDGAEGSWFQKISSRFCSRQSFALEQLKAK 138
Query: 88 TQHNVGALVVVKPGEQK 104
+ + V+ E +
Sbjct: 139 QRKDPRFCAFVQEAESR 155
>pdb|3ODX|A Chain A, Crystal Structure Of An N-Terminally Truncated Linker-DhPH
DOMAINS OF P115-Rhogef
pdb|3ODX|B Chain B, Crystal Structure Of An N-Terminally Truncated Linker-DhPH
DOMAINS OF P115-Rhogef
Length = 417
Score = 29.6 bits (65), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 33/78 (42%), Gaps = 6/78 (7%)
Query: 34 VSSRFESVSSARMEEHGFESTTISDILKAKGKGADGSWL------WCTTDDTVYDAVKSM 87
V S F R +E G+ I D+L A+ GA+GSW +C+ + +K+
Sbjct: 121 VHSLFLDRLMKRRQESGYLIEEIGDVLLARFDGAEGSWFQKISSRFCSRQSFALEQLKAK 180
Query: 88 TQHNVGALVVVKPGEQKS 105
+ + V+ E +
Sbjct: 181 QRKDPRFCAFVQEAESRP 198
>pdb|1PVM|A Chain A, Crystal Structure Of A Conserved Cbs Domain Protein Ta0289
Of Unknown Function From Thermoplasma Acidophilum
pdb|1PVM|B Chain B, Crystal Structure Of A Conserved Cbs Domain Protein Ta0289
Of Unknown Function From Thermoplasma Acidophilum
Length = 184
Score = 29.6 bits (65), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 15/61 (24%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 79 TVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEE 138
TV+DAVK M ++++ LVV + + G+++ER +++ I + + + +M +
Sbjct: 27 TVFDAVKIMNENHLYGLVV--KDDNGNDVGLLSERSIIKRFIPRNKKPDEVPIRLVMRKP 84
Query: 139 V 139
+
Sbjct: 85 I 85
>pdb|2QH1|A Chain A, Structure Of Ta289, A Cbs-Rubredoxin-Like Protein, In Its
Fe+2-Bound State
pdb|2QH1|B Chain B, Structure Of Ta289, A Cbs-Rubredoxin-Like Protein, In Its
Fe+2-Bound State
Length = 198
Score = 29.6 bits (65), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 15/61 (24%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 79 TVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEE 138
TV+DAVK M ++++ LVV + + G+++ER +++ I + + + +M +
Sbjct: 41 TVFDAVKIMNENHLYGLVV--KDDNGNDVGLLSERSIIKRFIPRNKKPDEVPIRLVMRKP 98
Query: 139 V 139
+
Sbjct: 99 I 99
>pdb|3USB|A Chain A, Crystal Structure Of Bacillus Anthracis Inosine
Monophosphate Dehydrogenase In The Complex With Imp
pdb|3USB|B Chain B, Crystal Structure Of Bacillus Anthracis Inosine
Monophosphate Dehydrogenase In The Complex With Imp
Length = 511
Score = 29.6 bits (65), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 6/67 (8%)
Query: 72 LWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKV 131
+ T + VYDA ++ + + VV +++ + GIIT RD R I S K+
Sbjct: 124 FFLTPEHQVYDAEHLXGKYRISGVPVVNNLDERKLVGIITNRD-XRFI-----QDYSIKI 177
Query: 132 GDIMTEE 138
D+ T+E
Sbjct: 178 SDVXTKE 184
>pdb|3ODW|A Chain A, Crystal Structure Of The Linker-DhPH DOMAINS OF
P115-Rhogef
pdb|3ODW|B Chain B, Crystal Structure Of The Linker-DhPH DOMAINS OF
P115-Rhogef
Length = 536
Score = 28.9 bits (63), Expect = 0.99, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 20/39 (51%)
Query: 34 VSSRFESVSSARMEEHGFESTTISDILKAKGKGADGSWL 72
V S F R +E G+ I D+L A+ GA+GSW
Sbjct: 234 VHSLFLDRLMKRRQESGYLIEEIGDVLLARFDGAEGSWF 272
>pdb|1ITX|A Chain A, Catalytic Domain Of Chitinase A1 From Bacillus Circulans
Wl-12
Length = 419
Score = 28.9 bits (63), Expect = 1.0, Method: Composition-based stats.
Identities = 25/115 (21%), Positives = 50/115 (43%), Gaps = 11/115 (9%)
Query: 12 GNIVKSAVLQRIRLVNPMLRPVVS-------SRFESVSSARMEEHGFESTTISDILKAKG 64
GNI + L +++ NP L+ ++S +RF V++ F ++ + + K
Sbjct: 108 GNINQ---LNKLKQTNPNLKTIISVGGWTWSNRFSDVAATAATREVFANSAVDFLRKYNF 164
Query: 65 KGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKI 119
G D W + + ++ + + N L++ K E+ AG + + YL I
Sbjct: 165 DGVDLDWEYPVSGGLDGNSKRPEDKQNY-TLLLSKIREKLDAAGAVDGKKYLLTI 218
>pdb|3FV6|A Chain A, Crystal Structure Of The Cbs Domains From The Bacillus
Subtilis Ccpn Repressor
pdb|3FV6|B Chain B, Crystal Structure Of The Cbs Domains From The Bacillus
Subtilis Ccpn Repressor
pdb|3FWR|A Chain A, Crystal Structure Of The Cbs Domains From The Bacillus
Subtilis Ccpn Repressor Complexed With Adp
pdb|3FWR|B Chain B, Crystal Structure Of The Cbs Domains From The Bacillus
Subtilis Ccpn Repressor Complexed With Adp
pdb|3FWS|A Chain A, Crystal Structure Of The Cbs Domains From The Bacillus
Subtilis Ccpn Repressor Complexed With Appnp, Phosphate
And Magnesium Ions
pdb|3FWS|B Chain B, Crystal Structure Of The Cbs Domains From The Bacillus
Subtilis Ccpn Repressor Complexed With Appnp, Phosphate
And Magnesium Ions
Length = 159
Score = 28.9 bits (63), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 79 TVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMT 136
+VYDA+ +M +VG L VV + G+++ +D LR I Q + S V IMT
Sbjct: 34 SVYDAICTMFLEDVGTLFVV--DRDAVLVGVLSRKDLLRASIGQQELT-SVPVHIIMT 88
>pdb|3PT5|A Chain A, Crystal Structure Of Nans
Length = 337
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/61 (21%), Positives = 27/61 (44%)
Query: 54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITER 113
+ +++I A D +W W Y+A+ Q+N+ A ++ +Q+ G+
Sbjct: 223 SQLNNITDAPWFCGDTTWYWKENFPHAYEAIYGNYQNNILANIIFVDFQQQGARGLTNAP 282
Query: 114 D 114
D
Sbjct: 283 D 283
>pdb|2IDA|A Chain A, Solution Nmr Structure Of Protein Rpa1320 From
Rhodopseudomonas Palustris. Northeast Structural
Genomics Consortium Target Rpt3; Ontario Center For
Structural Proteomics Target Rp1313
Length = 102
Score = 28.1 bits (61), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 63 KGKGADGSWLWCTTDDTVYDAVKSMTQHN 91
+G W WC D+ ++D MT HN
Sbjct: 67 EGYDPPEGWGWCYVDEVMFDLSDRMTPHN 95
>pdb|1ZU4|A Chain A, Crystal Structure Of Ftsy From Mycoplasma Mycoides- Space
Group P21212
pdb|1ZU5|A Chain A, Crystal Structure Of Ftsy From Mycoplasma Mycoides- Space
Group H32
pdb|1ZU5|B Chain B, Crystal Structure Of Ftsy From Mycoplasma Mycoides- Space
Group H32
Length = 320
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 7/74 (9%)
Query: 58 DILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117
D++KA AD + V+DA+K + N L++ G ++ ++ E + +
Sbjct: 165 DLVKANKLNADPA-------SVVFDAIKKAKEQNYDLLLIDTAGRLQNKTNLMAELEKMN 217
Query: 118 KIIVQGRSSKSTKV 131
KII Q S +V
Sbjct: 218 KIIQQVEKSAPHEV 231
>pdb|3J08|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J08|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 645
Score = 26.9 bits (58), Expect = 3.3, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 92 VGALVVVKPGEQKSVAGIITE-RDYLRKIIVQG 123
VG +V+V+PGE+ V G++ E Y+ + ++ G
Sbjct: 153 VGDIVIVRPGEKIPVDGVVVEGESYVDESMISG 185
>pdb|1QHQ|A Chain A, Auracyanin, A Blue Copper Protein From The Green
Thermophilic Photosynthetic Bacterium Chloroflexus
Aurantiacus
pdb|1OV8|A Chain A, Auracyanin B Structure In Space Group, P65
pdb|1OV8|B Chain B, Auracyanin B Structure In Space Group, P65
pdb|1OV8|C Chain C, Auracyanin B Structure In Space Group, P65
pdb|1OV8|D Chain D, Auracyanin B Structure In Space Group, P65
Length = 140
Score = 26.9 bits (58), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 21/50 (42%)
Query: 58 DILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVA 107
D + G +W+ D V AV + Q+N AL V P ++A
Sbjct: 46 DFVNQNNLGVQHNWVLVNGGDDVAAAVNTAAQNNADALFVPPPDTPNALA 95
>pdb|3KH5|A Chain A, Crystal Structure Of Protein Mj1225 From
Methanocaldococcus Jannaschii, A Putative Archaeal
Homolog Of G-Ampk.
pdb|3LFZ|A Chain A, Crystal Structure Of Protein Mj1225 From
Methanocaldococcus Jannaschii, A Putative Archaeal
Homolog Of G-Ampk
Length = 280
Score = 26.9 bits (58), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Query: 87 MTQHNVGALVVVKPGEQKSVAGIITERDYLR 117
M +++GAL VV E + GIITE+D L+
Sbjct: 249 MVTNDIGALPVV--DENLRIKGIITEKDVLK 277
>pdb|2C0H|A Chain A, X-Ray Structure Of Beta-Mannanase From Blue Mussel Mytilus
Edulis
Length = 353
Score = 26.9 bits (58), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 8/60 (13%)
Query: 31 RPVVSSRFESVSSARMEEHGFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQH 90
+P+V F +EHG ++ S A KG G+W W TD + + ++ M QH
Sbjct: 288 KPMVIGEFN-------QEHGAGMSSESMFEWAYTKGYSGAWTWSRTDVSWNNQLRGM-QH 339
>pdb|3NCP|A Chain A, Glnk2 From Archaeoglobus Fulgidus
pdb|3NCP|B Chain B, Glnk2 From Archaeoglobus Fulgidus
pdb|3NCP|C Chain C, Glnk2 From Archaeoglobus Fulgidus
pdb|3NCP|D Chain D, Glnk2 From Archaeoglobus Fulgidus
pdb|3NCQ|A Chain A, Glnk2 From Archaeoglobus Fulgidus, Atp Complex
pdb|3NCQ|B Chain B, Glnk2 From Archaeoglobus Fulgidus, Atp Complex
pdb|3NCQ|C Chain C, Glnk2 From Archaeoglobus Fulgidus, Atp Complex
pdb|3NCR|A Chain A, Glnk2 From Archaeoglubus Fulgidus, Adp Complex
pdb|3NCR|B Chain B, Glnk2 From Archaeoglubus Fulgidus, Adp Complex
pdb|3NCR|C Chain C, Glnk2 From Archaeoglubus Fulgidus, Adp Complex
Length = 119
Score = 26.2 bits (56), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
Query: 33 VVSSRFESVSSARMEEHGFESTTISDILKAKGKGADGSW 71
V + +F V +A +EE GF T++D+ KG+G G
Sbjct: 8 VRAEKFPEVKAA-LEERGFYGMTVTDV---KGRGQQGGM 42
>pdb|3NCX|A Chain A, Crystal Structure Of Ehec O157:h7 Intimin Mutant
pdb|3NCX|B Chain B, Crystal Structure Of Ehec O157:h7 Intimin Mutant
Length = 189
Score = 26.2 bits (56), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Query: 60 LKAKGKGADGSWLWCTTDDTV--YDAVKSMTQHNVGALVV-VKPGEQKSVAGIITERDYL 116
K K G DG++ W + + ++ DA +T + G++V+ G++++V+ I Y+
Sbjct: 38 FKLKASGGDGTYSWYSENTSIATVDASGKVTLNGKGSVVIKATSGDKQTVSYTIKAPSYM 97
Query: 117 RKI 119
K+
Sbjct: 98 IKV 100
>pdb|2ZWK|A Chain A, Crystal Structure Of Intimin-Tir90 Complex
pdb|2ZWK|C Chain C, Crystal Structure Of Intimin-Tir90 Complex
pdb|2ZWK|E Chain E, Crystal Structure Of Intimin-Tir90 Complex
Length = 184
Score = 26.2 bits (56), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Query: 60 LKAKGKGADGSWLWCTTDDTV--YDAVKSMTQHNVGALVV-VKPGEQKSVAGIITERDYL 116
K K G DG++ W + + ++ DA +T + G++V+ G++++V+ I Y+
Sbjct: 33 FKLKASGGDGTYSWYSENTSIATVDASGKVTLNGKGSVVIKATSGDKQTVSYTIKAPSYM 92
Query: 117 RKI 119
K+
Sbjct: 93 IKV 95
>pdb|2ZQK|A Chain A, Crystal Structure Of Intimin-Tir68 Complex
pdb|2ZQK|B Chain B, Crystal Structure Of Intimin-Tir68 Complex
pdb|3NCW|A Chain A, Crystal Structure Of Ehec O157:h7 Intimin
pdb|3NCW|B Chain B, Crystal Structure Of Ehec O157:h7 Intimin
pdb|3NCW|C Chain C, Crystal Structure Of Ehec O157:h7 Intimin
pdb|3NCW|D Chain D, Crystal Structure Of Ehec O157:h7 Intimin
Length = 189
Score = 26.2 bits (56), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Query: 60 LKAKGKGADGSWLWCTTDDTV--YDAVKSMTQHNVGALVV-VKPGEQKSVAGIITERDYL 116
K K G DG++ W + + ++ DA +T + G++V+ G++++V+ I Y+
Sbjct: 38 FKLKASGGDGTYSWYSENTSIATVDASGKVTLNGKGSVVIKATSGDKQTVSYTIKAPSYM 97
Query: 117 RKI 119
K+
Sbjct: 98 IKV 100
>pdb|3J09|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J09|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 723
Score = 25.8 bits (55), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 92 VGALVVVKPGEQKSVAGIITE-RDYLRKIIVQG 123
VG +V+V+PGE+ V G++ E Y+ + ++ G
Sbjct: 231 VGDIVIVRPGEKIPVDGVVVEGESYVDESMISG 263
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.129 0.361
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,601,275
Number of Sequences: 62578
Number of extensions: 121913
Number of successful extensions: 371
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 345
Number of HSP's gapped (non-prelim): 37
length of query: 139
length of database: 14,973,337
effective HSP length: 89
effective length of query: 50
effective length of database: 9,403,895
effective search space: 470194750
effective search space used: 470194750
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 46 (22.3 bits)