Query 032497
Match_columns 139
No_of_seqs 149 out of 1708
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 14:51:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032497.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032497hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG3620 Predicted transcriptio 99.4 5.9E-13 1.3E-17 95.3 6.9 125 5-139 10-140 (187)
2 PF00571 CBS: CBS domain CBS d 99.4 4.9E-12 1.1E-16 75.4 8.1 56 56-120 1-56 (57)
3 COG3448 CBS-domain-containing 99.1 1.6E-10 3.4E-15 90.2 7.0 80 51-139 242-325 (382)
4 COG2524 Predicted transcriptio 99.1 6.3E-10 1.4E-14 85.2 7.4 62 50-120 230-291 (294)
5 COG2524 Predicted transcriptio 99.0 5.3E-10 1.2E-14 85.6 6.9 75 52-139 170-244 (294)
6 COG2905 Predicted signal-trans 99.0 7.5E-10 1.6E-14 92.4 6.7 77 53-139 148-224 (610)
7 cd04608 CBS_pair_PALP_assoc Th 99.0 4.7E-09 1E-13 71.8 8.4 66 70-138 3-68 (124)
8 PRK10892 D-arabinose 5-phospha 98.9 1.1E-08 2.3E-13 81.1 8.9 79 52-138 200-278 (326)
9 cd04603 CBS_pair_KefB_assoc Th 98.9 7.9E-09 1.7E-13 68.9 6.2 55 54-117 56-110 (111)
10 PRK11543 gutQ D-arabinose 5-ph 98.9 1.2E-08 2.5E-13 80.6 8.0 75 53-138 196-272 (321)
11 cd04630 CBS_pair_17 The CBS do 98.8 3E-08 6.5E-13 66.1 8.1 67 70-138 2-69 (114)
12 cd04619 CBS_pair_6 The CBS dom 98.8 2.8E-08 6E-13 66.5 7.1 57 52-117 57-113 (114)
13 TIGR01137 cysta_beta cystathio 98.8 3.3E-08 7.3E-13 81.4 8.7 77 52-138 333-409 (454)
14 cd04597 CBS_pair_DRTGG_assoc2 98.7 3.3E-08 7.1E-13 66.8 6.5 55 54-117 58-112 (113)
15 cd04623 CBS_pair_10 The CBS do 98.7 9.7E-08 2.1E-12 62.9 8.4 67 70-138 2-68 (113)
16 TIGR00393 kpsF KpsF/GutQ famil 98.7 4.1E-08 8.8E-13 75.5 7.2 74 54-138 155-229 (268)
17 cd04600 CBS_pair_HPP_assoc Thi 98.7 7E-08 1.5E-12 64.9 6.6 56 53-117 68-123 (124)
18 PRK01862 putative voltage-gate 98.7 6.5E-08 1.4E-12 82.2 7.8 78 51-138 444-521 (574)
19 COG3448 CBS-domain-containing 98.7 5.6E-08 1.2E-12 76.1 6.7 62 51-121 312-373 (382)
20 cd04619 CBS_pair_6 The CBS dom 98.7 1.6E-07 3.4E-12 62.7 8.0 66 71-138 3-68 (114)
21 cd04593 CBS_pair_EriC_assoc_ba 98.7 1.6E-07 3.5E-12 62.5 8.0 65 70-137 2-66 (115)
22 cd04607 CBS_pair_NTP_transfera 98.7 1.2E-07 2.6E-12 62.9 7.2 56 53-117 57-112 (113)
23 cd04624 CBS_pair_11 The CBS do 98.6 2.4E-07 5.2E-12 61.2 8.2 65 70-138 2-66 (112)
24 cd04643 CBS_pair_30 The CBS do 98.6 1.6E-07 3.5E-12 62.3 7.4 66 70-137 2-71 (116)
25 cd04630 CBS_pair_17 The CBS do 98.6 1.4E-07 3E-12 62.8 6.6 55 53-117 59-113 (114)
26 cd04620 CBS_pair_7 The CBS dom 98.6 1.7E-07 3.6E-12 62.3 7.0 56 53-117 57-114 (115)
27 cd04606 CBS_pair_Mg_transporte 98.6 1.8E-07 4E-12 61.8 6.9 57 53-118 52-108 (109)
28 cd04613 CBS_pair_SpoIVFB_EriC_ 98.6 2.3E-07 5E-12 61.2 7.3 66 70-138 2-67 (114)
29 cd04596 CBS_pair_DRTGG_assoc T 98.6 2.4E-07 5.1E-12 61.1 7.2 56 53-117 52-107 (108)
30 cd04618 CBS_pair_5 The CBS dom 98.6 8.7E-08 1.9E-12 63.1 5.1 55 54-117 41-97 (98)
31 cd04617 CBS_pair_4 The CBS dom 98.6 1.6E-07 3.4E-12 63.1 6.4 59 52-117 56-117 (118)
32 cd04615 CBS_pair_2 The CBS dom 98.6 2.7E-07 5.9E-12 61.0 7.4 66 70-138 2-67 (113)
33 cd04627 CBS_pair_14 The CBS do 98.6 1.7E-07 3.7E-12 63.3 6.4 45 70-116 77-121 (123)
34 cd04625 CBS_pair_12 The CBS do 98.6 1.9E-07 4.1E-12 61.7 6.4 55 53-117 57-111 (112)
35 cd04610 CBS_pair_ParBc_assoc T 98.6 2.6E-07 5.6E-12 60.4 6.8 56 53-117 51-106 (107)
36 cd04587 CBS_pair_CAP-ED_DUF294 98.6 1.8E-07 3.8E-12 61.8 5.9 55 54-117 58-112 (113)
37 cd04593 CBS_pair_EriC_assoc_ba 98.6 2.3E-07 4.9E-12 61.8 6.4 56 53-117 57-114 (115)
38 cd04604 CBS_pair_KpsF_GutQ_ass 98.6 3.4E-07 7.3E-12 60.5 7.2 55 54-117 59-113 (114)
39 cd04617 CBS_pair_4 The CBS dom 98.6 4.4E-07 9.6E-12 60.9 7.8 64 70-136 2-65 (118)
40 cd04615 CBS_pair_2 The CBS dom 98.6 3.5E-07 7.6E-12 60.5 7.2 57 52-117 56-112 (113)
41 cd04631 CBS_pair_18 The CBS do 98.6 2.7E-07 5.9E-12 62.1 6.7 56 53-117 69-124 (125)
42 cd04595 CBS_pair_DHH_polyA_Pol 98.6 4E-07 8.6E-12 60.0 7.3 56 52-117 54-109 (110)
43 cd04629 CBS_pair_16 The CBS do 98.5 3.4E-07 7.4E-12 60.5 6.9 66 70-137 2-68 (114)
44 cd04635 CBS_pair_22 The CBS do 98.5 3.2E-07 6.9E-12 61.5 6.7 56 53-117 66-121 (122)
45 PRK10892 D-arabinose 5-phospha 98.5 2.9E-07 6.2E-12 72.9 7.4 56 53-118 268-323 (326)
46 PRK11543 gutQ D-arabinose 5-ph 98.5 4E-07 8.7E-12 71.8 8.2 57 53-118 262-318 (321)
47 cd04585 CBS_pair_ACT_assoc2 Th 98.5 3.9E-07 8.5E-12 60.6 7.0 56 53-117 66-121 (122)
48 cd04582 CBS_pair_ABC_OpuCA_ass 98.5 4.2E-07 9.2E-12 59.4 7.0 54 55-117 52-105 (106)
49 cd04641 CBS_pair_28 The CBS do 98.5 4.7E-07 1E-11 60.8 7.4 48 70-119 2-49 (120)
50 cd04603 CBS_pair_KefB_assoc Th 98.5 4.9E-07 1.1E-11 60.1 7.2 64 70-138 2-65 (111)
51 cd04640 CBS_pair_27 The CBS do 98.5 5.4E-07 1.2E-11 61.2 7.6 66 70-137 2-72 (126)
52 cd04586 CBS_pair_BON_assoc Thi 98.5 2.6E-07 5.5E-12 63.5 5.9 55 53-117 80-134 (135)
53 cd04583 CBS_pair_ABC_OpuCA_ass 98.5 4.6E-07 1E-11 59.3 6.8 55 54-117 54-108 (109)
54 cd04621 CBS_pair_8 The CBS dom 98.5 5.3E-07 1.2E-11 62.5 7.3 49 70-120 2-50 (135)
55 cd04801 CBS_pair_M50_like This 98.5 2.7E-07 5.8E-12 61.3 5.6 58 53-117 56-113 (114)
56 cd04611 CBS_pair_PAS_GGDEF_DUF 98.5 5.8E-07 1.3E-11 59.0 7.2 57 52-117 54-110 (111)
57 cd04602 CBS_pair_IMPDH_2 This 98.5 4.9E-07 1.1E-11 60.2 6.8 55 54-117 57-113 (114)
58 cd04629 CBS_pair_16 The CBS do 98.5 3.2E-07 6.9E-12 60.7 5.7 55 53-117 59-113 (114)
59 cd04587 CBS_pair_CAP-ED_DUF294 98.5 9.4E-07 2E-11 58.3 8.0 66 70-138 2-67 (113)
60 cd04609 CBS_pair_PALP_assoc2 T 98.5 7.3E-07 1.6E-11 58.4 7.3 64 70-137 2-65 (110)
61 cd04622 CBS_pair_9 The CBS dom 98.5 1E-06 2.2E-11 58.2 8.0 65 70-137 2-66 (113)
62 TIGR03520 GldE gliding motilit 98.5 2.8E-07 6.1E-12 75.6 6.3 78 50-138 187-264 (408)
63 cd04621 CBS_pair_8 The CBS dom 98.5 6.1E-07 1.3E-11 62.2 7.2 55 53-117 80-134 (135)
64 cd04641 CBS_pair_28 The CBS do 98.5 4.3E-07 9.3E-12 61.0 6.3 46 70-117 74-119 (120)
65 cd04803 CBS_pair_15 The CBS do 98.5 7.6E-07 1.6E-11 59.6 7.4 56 53-117 66-121 (122)
66 cd04592 CBS_pair_EriC_assoc_eu 98.5 8.5E-07 1.8E-11 61.8 7.9 50 70-121 2-51 (133)
67 cd04639 CBS_pair_26 The CBS do 98.5 5.9E-07 1.3E-11 59.2 6.7 56 53-117 55-110 (111)
68 cd04632 CBS_pair_19 The CBS do 98.5 6.2E-07 1.3E-11 60.8 7.0 58 53-117 70-127 (128)
69 cd04800 CBS_pair_CAP-ED_DUF294 98.5 6.3E-07 1.4E-11 59.1 6.8 55 53-117 56-110 (111)
70 cd04599 CBS_pair_GGDEF_assoc2 98.5 6.3E-07 1.4E-11 58.4 6.7 54 53-116 50-103 (105)
71 cd04618 CBS_pair_5 The CBS dom 98.5 5.4E-07 1.2E-11 59.3 6.4 48 70-119 2-50 (98)
72 cd04623 CBS_pair_10 The CBS do 98.5 6.3E-07 1.4E-11 58.9 6.7 55 53-117 58-112 (113)
73 cd04601 CBS_pair_IMPDH This cd 98.5 7.4E-07 1.6E-11 58.4 6.9 56 53-117 53-109 (110)
74 cd04607 CBS_pair_NTP_transfera 98.5 1.1E-06 2.4E-11 58.2 7.8 65 70-138 3-67 (113)
75 cd04613 CBS_pair_SpoIVFB_EriC_ 98.5 4.5E-07 9.7E-12 59.8 5.8 55 54-117 58-113 (114)
76 PRK15094 magnesium/cobalt effl 98.5 3.7E-07 8.1E-12 71.8 6.3 79 50-138 63-142 (292)
77 PRK07107 inosine 5-monophospha 98.5 6.5E-07 1.4E-11 75.2 8.0 60 52-118 159-218 (502)
78 cd04588 CBS_pair_CAP-ED_DUF294 98.5 9.2E-07 2E-11 58.2 7.3 55 54-117 55-109 (110)
79 TIGR00400 mgtE Mg2+ transporte 98.5 7.6E-07 1.7E-11 73.8 8.4 61 52-121 193-253 (449)
80 cd04640 CBS_pair_27 The CBS do 98.5 3.5E-07 7.5E-12 62.2 5.3 56 53-117 63-125 (126)
81 cd04605 CBS_pair_MET2_assoc Th 98.5 1.3E-06 2.9E-11 57.4 8.0 48 70-119 3-50 (110)
82 cd04622 CBS_pair_9 The CBS dom 98.5 6.6E-07 1.4E-11 59.0 6.5 55 54-117 58-112 (113)
83 cd04632 CBS_pair_19 The CBS do 98.5 9.8E-07 2.1E-11 59.8 7.3 48 70-119 2-49 (128)
84 cd04589 CBS_pair_CAP-ED_DUF294 98.4 1.6E-06 3.4E-11 57.2 8.1 64 70-137 2-65 (111)
85 cd04643 CBS_pair_30 The CBS do 98.4 5.9E-07 1.3E-11 59.6 6.0 54 53-117 62-115 (116)
86 cd04600 CBS_pair_HPP_assoc Thi 98.4 1.1E-06 2.4E-11 58.9 7.5 49 70-120 3-51 (124)
87 PRK14869 putative manganese-de 98.4 8.4E-07 1.8E-11 75.0 8.1 59 54-121 68-126 (546)
88 cd04626 CBS_pair_13 The CBS do 98.4 8.2E-07 1.8E-11 58.6 6.5 55 53-117 56-110 (111)
89 cd04583 CBS_pair_ABC_OpuCA_ass 98.4 1.7E-06 3.6E-11 56.6 7.9 48 70-119 3-50 (109)
90 cd04624 CBS_pair_11 The CBS do 98.4 1.5E-06 3.3E-11 57.3 7.7 56 53-117 56-111 (112)
91 cd04614 CBS_pair_1 The CBS dom 98.4 6.7E-07 1.4E-11 58.4 5.9 56 54-117 40-95 (96)
92 cd04605 CBS_pair_MET2_assoc Th 98.4 1.3E-06 2.8E-11 57.5 7.3 55 54-117 55-109 (110)
93 PRK07807 inosine 5-monophospha 98.4 5.3E-07 1.2E-11 75.3 6.6 70 53-138 88-157 (479)
94 cd04636 CBS_pair_23 The CBS do 98.4 8.1E-07 1.8E-11 60.7 6.5 54 54-117 78-131 (132)
95 cd04633 CBS_pair_20 The CBS do 98.4 7.1E-07 1.5E-11 59.7 6.1 55 53-117 66-120 (121)
96 PRK07807 inosine 5-monophospha 98.4 9.4E-07 2E-11 73.9 7.9 57 54-119 148-204 (479)
97 cd04612 CBS_pair_SpoIVFB_EriC_ 98.4 1.4E-06 3E-11 57.2 7.3 55 54-117 56-110 (111)
98 cd04626 CBS_pair_13 The CBS do 98.4 1.4E-06 3.1E-11 57.4 7.4 65 70-138 2-66 (111)
99 cd04802 CBS_pair_3 The CBS dom 98.4 1.2E-06 2.5E-11 57.9 6.9 55 53-117 57-111 (112)
100 cd04636 CBS_pair_23 The CBS do 98.4 1.2E-06 2.5E-11 59.9 7.1 49 70-120 2-50 (132)
101 cd04608 CBS_pair_PALP_assoc Th 98.4 2.1E-07 4.6E-12 63.6 3.3 58 52-118 57-123 (124)
102 cd04614 CBS_pair_1 The CBS dom 98.4 1.2E-06 2.6E-11 57.2 6.7 47 70-118 2-48 (96)
103 cd04589 CBS_pair_CAP-ED_DUF294 98.4 1E-06 2.3E-11 58.1 6.5 55 53-117 56-110 (111)
104 TIGR01303 IMP_DH_rel_1 IMP deh 98.4 1.1E-06 2.3E-11 73.5 7.9 57 54-119 146-202 (475)
105 cd04639 CBS_pair_26 The CBS do 98.4 1.6E-06 3.4E-11 57.1 7.3 63 70-137 2-64 (111)
106 cd04642 CBS_pair_29 The CBS do 98.4 8.8E-07 1.9E-11 60.1 6.2 46 70-117 80-125 (126)
107 cd04800 CBS_pair_CAP-ED_DUF294 98.4 1.8E-06 4E-11 56.8 7.6 64 70-137 2-65 (111)
108 cd04582 CBS_pair_ABC_OpuCA_ass 98.4 1.7E-06 3.7E-11 56.5 7.3 47 70-118 2-48 (106)
109 cd04637 CBS_pair_24 The CBS do 98.4 1.4E-06 3.1E-11 58.4 7.0 55 54-117 67-121 (122)
110 COG4109 Predicted transcriptio 98.4 1.5E-06 3.2E-11 69.6 8.0 66 51-125 246-311 (432)
111 TIGR00400 mgtE Mg2+ transporte 98.4 8.8E-07 1.9E-11 73.4 7.1 74 49-138 126-204 (449)
112 cd04801 CBS_pair_M50_like This 98.4 1.4E-06 3.1E-11 57.8 6.8 62 70-136 2-64 (114)
113 cd04590 CBS_pair_CorC_HlyC_ass 98.4 1.2E-06 2.7E-11 57.6 6.5 54 54-117 57-110 (111)
114 cd04802 CBS_pair_3 The CBS dom 98.4 2.6E-06 5.6E-11 56.2 8.1 65 70-137 2-66 (112)
115 cd04594 CBS_pair_EriC_assoc_ar 98.4 9.1E-07 2E-11 58.1 5.8 54 54-117 50-103 (104)
116 smart00116 CBS Domain in cysta 98.4 1.8E-06 4E-11 47.7 6.3 46 71-118 2-47 (49)
117 PRK01862 putative voltage-gate 98.4 1.3E-06 2.8E-11 74.3 8.1 60 54-120 512-571 (574)
118 cd04584 CBS_pair_ACT_assoc Thi 98.4 1.6E-06 3.5E-11 57.8 6.8 56 52-117 65-120 (121)
119 COG0517 FOG: CBS domain [Gener 98.4 1.3E-06 2.8E-11 57.9 6.3 52 55-115 63-116 (117)
120 cd04625 CBS_pair_12 The CBS do 98.4 2.8E-06 6.1E-11 56.0 7.8 66 70-138 2-67 (112)
121 cd04803 CBS_pair_15 The CBS do 98.4 1.9E-06 4.1E-11 57.7 7.0 49 70-120 2-50 (122)
122 cd04604 CBS_pair_KpsF_GutQ_ass 98.4 2E-06 4.4E-11 56.7 6.9 66 70-138 3-68 (114)
123 cd04596 CBS_pair_DRTGG_assoc T 98.4 1.6E-06 3.4E-11 57.1 6.3 59 70-137 3-61 (108)
124 cd04588 CBS_pair_CAP-ED_DUF294 98.4 3E-06 6.5E-11 55.7 7.6 62 70-137 2-63 (110)
125 PLN02274 inosine-5'-monophosph 98.3 2E-06 4.4E-11 72.3 8.2 62 52-120 161-222 (505)
126 PRK14869 putative manganese-de 98.3 1.4E-06 3E-11 73.7 7.3 57 53-118 245-302 (546)
127 COG0517 FOG: CBS domain [Gener 98.3 2.6E-06 5.6E-11 56.4 7.1 63 70-137 8-70 (117)
128 COG2905 Predicted signal-trans 98.3 1.1E-06 2.4E-11 73.8 6.2 58 52-119 212-269 (610)
129 cd04631 CBS_pair_18 The CBS do 98.3 2.2E-06 4.7E-11 57.6 6.6 49 70-120 2-51 (125)
130 cd04591 CBS_pair_EriC_assoc_eu 98.3 1.5E-06 3.2E-11 57.6 5.7 49 59-117 56-104 (105)
131 cd04612 CBS_pair_SpoIVFB_EriC_ 98.3 3.4E-06 7.4E-11 55.3 7.2 63 70-137 2-64 (111)
132 cd04611 CBS_pair_PAS_GGDEF_DUF 98.3 4.5E-06 9.7E-11 54.7 7.5 63 70-137 2-64 (111)
133 cd04586 CBS_pair_BON_assoc Thi 98.3 2.8E-06 6.1E-11 58.3 6.6 48 70-119 3-50 (135)
134 cd04595 CBS_pair_DHH_polyA_Pol 98.3 5.3E-06 1.1E-10 54.6 7.6 63 70-138 3-65 (110)
135 PRK05567 inosine 5'-monophosph 98.3 2.1E-06 4.6E-11 71.8 6.9 68 54-136 87-154 (486)
136 cd04590 CBS_pair_CorC_HlyC_ass 98.3 5.4E-06 1.2E-10 54.5 7.5 49 70-120 2-51 (111)
137 PRK11573 hypothetical protein; 98.3 3.5E-06 7.7E-11 69.2 7.9 64 50-119 183-246 (413)
138 COG3620 Predicted transcriptio 98.3 2.4E-06 5.2E-11 61.6 6.0 92 10-119 92-183 (187)
139 cd04620 CBS_pair_7 The CBS dom 98.3 6E-06 1.3E-10 54.7 7.6 65 70-138 2-67 (115)
140 cd04635 CBS_pair_22 The CBS do 98.3 3.2E-06 6.8E-11 56.6 6.2 47 70-118 2-48 (122)
141 cd04634 CBS_pair_21 The CBS do 98.3 4.4E-06 9.5E-11 58.2 7.0 48 70-120 2-49 (143)
142 cd02205 CBS_pair The CBS domai 98.2 1.1E-05 2.5E-10 52.0 8.2 49 70-120 2-50 (113)
143 cd04642 CBS_pair_29 The CBS do 98.2 4.2E-06 9.1E-11 56.7 6.3 48 70-119 2-49 (126)
144 cd04633 CBS_pair_20 The CBS do 98.2 5.6E-06 1.2E-10 55.3 6.8 48 70-120 2-49 (121)
145 cd04627 CBS_pair_14 The CBS do 98.2 5.9E-06 1.3E-10 55.7 6.9 49 70-120 2-51 (123)
146 cd04602 CBS_pair_IMPDH_2 This 98.2 6.8E-06 1.5E-10 54.6 7.1 60 70-137 3-65 (114)
147 PRK07107 inosine 5-monophospha 98.2 3.3E-06 7E-11 71.0 6.5 73 54-137 94-169 (502)
148 TIGR01302 IMP_dehydrog inosine 98.2 3.5E-06 7.5E-11 70.0 6.5 68 54-136 80-150 (450)
149 cd04598 CBS_pair_GGDEF_assoc T 98.2 4.9E-06 1.1E-10 55.4 6.1 56 53-117 60-118 (119)
150 COG4109 Predicted transcriptio 98.2 1.8E-06 4E-11 69.1 4.6 72 53-138 187-258 (432)
151 cd04585 CBS_pair_ACT_assoc2 Th 98.2 9.5E-06 2.1E-10 53.8 7.4 47 70-119 2-48 (122)
152 PRK15094 magnesium/cobalt effl 98.2 4.5E-06 9.8E-11 65.7 6.6 58 54-121 133-190 (292)
153 cd02205 CBS_pair The CBS domai 98.2 8.1E-06 1.8E-10 52.7 6.8 53 56-117 60-112 (113)
154 cd04601 CBS_pair_IMPDH This cd 98.2 5.4E-06 1.2E-10 54.3 5.9 60 70-137 3-62 (110)
155 cd04638 CBS_pair_25 The CBS do 98.2 7.2E-06 1.6E-10 53.6 6.2 54 54-117 52-105 (106)
156 cd04599 CBS_pair_GGDEF_assoc2 98.2 7.5E-06 1.6E-10 53.2 6.2 45 70-117 2-46 (105)
157 cd04598 CBS_pair_GGDEF_assoc T 98.2 5.5E-06 1.2E-10 55.2 5.6 66 70-138 2-70 (119)
158 cd04634 CBS_pair_21 The CBS do 98.1 1E-05 2.2E-10 56.4 6.9 55 53-117 88-142 (143)
159 PTZ00314 inosine-5'-monophosph 98.1 7.3E-06 1.6E-10 68.8 7.1 60 53-119 158-217 (495)
160 cd04609 CBS_pair_PALP_assoc2 T 98.1 1E-05 2.2E-10 52.9 6.4 54 53-117 56-109 (110)
161 PLN02274 inosine-5'-monophosph 98.1 6.7E-06 1.4E-10 69.2 6.5 61 70-138 109-172 (505)
162 TIGR01303 IMP_DH_rel_1 IMP deh 98.1 7.9E-06 1.7E-10 68.3 6.9 69 53-138 87-155 (475)
163 TIGR01302 IMP_dehydrog inosine 98.1 9E-06 1.9E-10 67.5 7.2 58 53-119 142-200 (450)
164 PTZ00314 inosine-5'-monophosph 98.1 6.1E-06 1.3E-10 69.3 6.0 60 70-137 105-167 (495)
165 COG2239 MgtE Mg/Co/Ni transpor 98.1 1.5E-05 3.3E-10 66.1 7.6 64 48-120 190-253 (451)
166 cd04637 CBS_pair_24 The CBS do 98.1 2.3E-05 5.1E-10 52.4 7.1 47 70-119 2-48 (122)
167 PRK05567 inosine 5'-monophosph 98.1 1.6E-05 3.5E-10 66.6 7.6 58 53-119 146-204 (486)
168 cd04594 CBS_pair_EriC_assoc_ar 98.0 2.4E-05 5.3E-10 51.2 6.8 43 72-117 4-46 (104)
169 TIGR00393 kpsF KpsF/GutQ famil 98.0 1.7E-05 3.6E-10 60.9 6.7 50 53-111 219-268 (268)
170 cd04584 CBS_pair_ACT_assoc Thi 98.0 2.7E-05 5.9E-10 51.8 6.7 48 70-119 2-49 (121)
171 TIGR03520 GldE gliding motilit 98.0 2.6E-05 5.7E-10 64.0 7.4 58 55-122 256-313 (408)
172 cd04606 CBS_pair_Mg_transporte 98.0 1.6E-05 3.5E-10 52.3 5.1 55 74-137 2-61 (109)
173 cd04610 CBS_pair_ParBc_assoc T 97.9 4.2E-05 9.1E-10 49.8 6.4 58 70-137 3-60 (107)
174 COG1253 TlyC Hemolysins and re 97.8 4.8E-05 1E-09 62.8 6.7 67 50-122 202-268 (429)
175 COG2239 MgtE Mg/Co/Ni transpor 97.8 3.7E-05 8E-10 63.9 5.3 75 48-138 126-205 (451)
176 TIGR01186 proV glycine betaine 97.8 0.00011 2.4E-09 59.6 7.7 56 55-120 303-358 (363)
177 cd04591 CBS_pair_EriC_assoc_eu 97.7 0.00012 2.6E-09 48.3 6.1 48 70-119 3-53 (105)
178 cd04638 CBS_pair_25 The CBS do 97.7 0.0002 4.3E-09 46.7 7.1 46 70-117 2-47 (106)
179 PRK10070 glycine betaine trans 97.6 0.0003 6.5E-09 57.7 7.8 59 55-123 338-396 (400)
180 TIGR01137 cysta_beta cystathio 97.6 0.00021 4.5E-09 59.0 6.7 55 53-119 399-453 (454)
181 KOG1764 5'-AMP-activated prote 97.4 0.001 2.2E-08 54.4 8.2 52 70-123 311-362 (381)
182 PRK11573 hypothetical protein; 97.3 0.00076 1.6E-08 55.6 6.8 51 70-122 263-313 (413)
183 COG4535 CorC Putative Mg2+ and 97.0 0.00046 1E-08 52.9 2.1 62 53-120 66-127 (293)
184 COG1253 TlyC Hemolysins and re 96.9 0.0028 6.1E-08 52.4 6.6 50 70-121 280-329 (429)
185 KOG2550 IMP dehydrogenase/GMP 96.9 0.0015 3.2E-08 53.6 4.6 58 52-118 169-226 (503)
186 KOG0474 Cl- channel CLC-7 and 96.9 0.0012 2.5E-08 56.7 4.1 47 70-118 699-745 (762)
187 cd04592 CBS_pair_EriC_assoc_eu 96.9 0.0013 2.8E-08 45.6 3.6 30 70-99 87-116 (133)
188 KOG1764 5'-AMP-activated prote 96.8 0.0025 5.4E-08 52.1 5.3 50 70-121 238-287 (381)
189 COG4536 CorB Putative Mg2+ and 96.8 0.0011 2.4E-08 53.8 2.8 67 50-122 196-262 (423)
190 KOG2550 IMP dehydrogenase/GMP 96.5 0.0027 5.9E-08 52.1 3.3 63 70-138 117-180 (503)
191 COG1125 OpuBA ABC-type proline 96.4 0.012 2.6E-07 46.0 6.2 80 31-117 228-307 (309)
192 COG4536 CorB Putative Mg2+ and 96.2 0.03 6.6E-07 45.6 7.7 51 70-122 276-326 (423)
193 TIGR03415 ABC_choXWV_ATP choli 95.9 0.023 5E-07 46.5 6.2 47 70-120 334-380 (382)
194 KOG0475 Cl- channel CLC-3 and 94.9 0.056 1.2E-06 46.7 5.4 57 53-119 638-694 (696)
195 KOG0476 Cl- channel CLC-2 and 94.8 0.027 5.7E-07 49.6 3.2 62 51-119 585-646 (931)
196 COG4535 CorC Putative Mg2+ and 94.2 0.25 5.5E-06 38.2 6.9 58 54-121 133-190 (293)
197 KOG0474 Cl- channel CLC-7 and 94.1 0.028 6E-07 48.6 1.8 61 52-119 580-643 (762)
198 PRK10070 glycine betaine trans 93.5 0.28 6E-06 40.4 6.6 60 54-119 274-333 (400)
199 COG4175 ProV ABC-type proline/ 93.1 0.27 5.9E-06 39.7 5.6 48 70-120 336-383 (386)
200 TIGR01186 proV glycine betaine 92.0 0.94 2E-05 36.8 7.7 48 70-119 251-298 (363)
201 KOG0475 Cl- channel CLC-3 and 89.7 0.74 1.6E-05 40.0 5.2 50 71-120 558-608 (696)
202 PF08220 HTH_DeoR: DeoR-like h 88.1 0.34 7.3E-06 28.7 1.6 35 2-36 3-37 (57)
203 KOG0476 Cl- channel CLC-2 and 82.8 2.4 5.3E-05 37.8 4.8 48 70-120 811-858 (931)
204 PF08279 HTH_11: HTH domain; 81.4 0.95 2.1E-05 26.1 1.3 33 2-34 3-36 (55)
205 PF05198 IF3_N: Translation in 71.8 11 0.00024 23.7 4.4 30 92-123 12-41 (76)
206 COG1349 GlpR Transcriptional r 70.8 2.6 5.6E-05 32.5 1.6 35 2-36 8-42 (253)
207 PRK10681 DNA-binding transcrip 65.6 4.4 9.6E-05 31.1 1.9 35 2-36 10-44 (252)
208 COG1476 Predicted transcriptio 64.0 5.3 0.00011 24.8 1.6 31 1-31 2-32 (68)
209 PF13412 HTH_24: Winged helix- 57.0 9.3 0.0002 21.2 1.8 30 2-31 6-35 (48)
210 PRK10434 srlR DNA-bindng trans 52.3 8.5 0.00019 29.6 1.4 35 2-36 8-42 (256)
211 cd02958 UAS UAS family; UAS is 49.1 28 0.0006 22.8 3.4 63 48-119 37-107 (114)
212 PF05225 HTH_psq: helix-turn-h 49.0 9.2 0.0002 21.4 0.9 30 1-31 5-34 (45)
213 PRK04424 fatty acid biosynthes 48.7 11 0.00024 27.6 1.5 35 2-36 10-44 (185)
214 smart00550 Zalpha Z-DNA-bindin 48.3 17 0.00038 22.0 2.1 33 2-34 9-43 (68)
215 COG0290 InfC Translation initi 47.4 55 0.0012 24.1 4.8 31 92-124 18-48 (176)
216 KOG2118 Predicted membrane pro 46.8 11 0.00024 32.1 1.4 57 52-113 202-259 (498)
217 CHL00199 infC translation init 46.3 38 0.00082 25.1 3.9 37 78-115 40-76 (182)
218 PRK09802 DNA-binding transcrip 45.1 13 0.00029 28.8 1.5 35 2-36 20-54 (269)
219 PRK10411 DNA-binding transcrip 44.9 16 0.00034 27.9 1.8 35 2-36 7-41 (240)
220 TIGR02844 spore_III_D sporulat 44.6 20 0.00042 22.9 2.0 34 2-36 9-42 (80)
221 PF03948 Ribosomal_L9_C: Ribos 44.2 20 0.00043 23.0 2.0 22 101-122 23-44 (87)
222 PF14827 Cache_3: Sensory doma 43.4 30 0.00065 22.9 2.9 17 94-112 93-109 (116)
223 PRK04140 hypothetical protein; 42.5 44 0.00095 26.9 4.1 94 3-98 129-226 (317)
224 PRK10906 DNA-binding transcrip 41.7 16 0.00034 28.1 1.5 35 2-36 8-42 (252)
225 PF14044 NETI: NETI protein 41.3 38 0.00082 20.2 2.7 25 72-98 2-26 (57)
226 TIGR00168 infC translation ini 41.2 43 0.00094 24.2 3.6 38 78-116 23-60 (165)
227 COG2216 KdpB High-affinity K+ 41.2 39 0.00084 29.4 3.7 40 78-120 413-452 (681)
228 TIGR03070 couple_hipB transcri 39.1 20 0.00044 20.0 1.3 27 3-29 5-31 (58)
229 PRK00028 infC translation init 39.0 55 0.0012 24.0 3.9 39 77-116 34-72 (177)
230 PRK13509 transcriptional repre 38.3 23 0.00049 27.2 1.8 35 2-36 8-42 (251)
231 smart00594 UAS UAS domain. 36.6 44 0.00096 22.3 2.9 62 48-118 47-120 (122)
232 TIGR00158 L9 ribosomal protein 35.2 59 0.0013 23.1 3.5 25 101-125 84-108 (148)
233 COG0359 RplI Ribosomal protein 35.0 1.6E+02 0.0034 21.1 5.6 25 100-124 83-107 (148)
234 PF01381 HTH_3: Helix-turn-hel 34.6 23 0.00049 19.9 1.0 26 5-30 1-26 (55)
235 COG1623 Predicted nucleic-acid 31.1 36 0.00079 27.3 1.9 29 71-99 15-43 (349)
236 smart00420 HTH_DEOR helix_turn 30.7 46 0.00099 18.0 1.9 33 2-34 3-35 (53)
237 PF13404 HTH_AsnC-type: AsnC-t 29.9 44 0.00096 18.3 1.7 29 2-30 6-34 (42)
238 PHA01976 helix-turn-helix prot 29.6 35 0.00076 20.0 1.3 27 4-30 6-32 (67)
239 PF13365 Trypsin_2: Trypsin-li 29.5 31 0.00068 22.0 1.2 19 89-109 102-120 (120)
240 PRK13482 DNA integrity scannin 29.0 64 0.0014 26.4 3.1 29 71-99 9-37 (352)
241 PRK00137 rplI 50S ribosomal pr 27.8 82 0.0018 22.2 3.2 24 101-124 84-107 (147)
242 PF12840 HTH_20: Helix-turn-he 27.1 45 0.00097 19.4 1.5 29 3-31 14-42 (61)
243 PF04703 FaeA: FaeA-like prote 27.1 62 0.0013 19.5 2.1 29 2-30 3-32 (62)
244 PRK10072 putative transcriptio 26.6 39 0.00085 22.2 1.2 25 5-29 38-62 (96)
245 PF02743 Cache_1: Cache domain 26.3 76 0.0016 19.2 2.5 22 94-117 18-43 (81)
246 PRK00441 argR arginine repress 26.3 52 0.0011 23.3 1.9 35 2-36 7-46 (149)
247 PF09012 FeoC: FeoC like trans 26.2 38 0.00083 20.4 1.1 30 2-31 3-32 (69)
248 PF01022 HTH_5: Bacterial regu 26.1 37 0.0008 18.7 0.9 29 3-32 6-34 (47)
249 CHL00160 rpl9 ribosomal protei 26.0 81 0.0018 22.5 2.9 22 101-122 90-111 (153)
250 COG2378 Predicted transcriptio 24.9 42 0.0009 26.7 1.3 34 3-36 12-45 (311)
251 cd06404 PB1_aPKC PB1 domain is 24.0 94 0.002 20.0 2.6 29 69-97 50-78 (83)
252 PRK05472 redox-sensing transcr 23.8 44 0.00096 24.7 1.2 35 2-36 19-55 (213)
253 COG4175 ProV ABC-type proline/ 22.7 42 0.00091 27.5 1.0 58 54-118 274-331 (386)
254 PRK09954 putative kinase; Prov 22.7 61 0.0013 25.8 1.9 34 2-35 6-39 (362)
255 PF13560 HTH_31: Helix-turn-he 22.3 49 0.0011 19.3 1.0 27 4-30 5-31 (64)
256 PF00944 Peptidase_S3: Alphavi 21.7 1E+02 0.0022 22.0 2.6 21 89-111 104-124 (158)
257 PRK03341 arginine repressor; P 21.3 67 0.0015 23.3 1.7 34 2-35 18-56 (168)
258 TIGR02612 mob_myst_A mobile my 21.1 65 0.0014 22.9 1.6 28 2-29 27-54 (150)
259 PRK09726 antitoxin HipB; Provi 20.8 60 0.0013 20.5 1.2 27 4-30 16-42 (88)
260 PF13098 Thioredoxin_2: Thiore 20.6 1.2E+02 0.0027 19.1 2.8 30 87-118 78-111 (112)
No 1
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=99.41 E-value=5.9e-13 Score=95.25 Aligned_cols=125 Identities=22% Similarity=0.331 Sum_probs=93.3
Q ss_pred HHHHhhcCCCchHHHHhhhCCccccccchhhhhhcccc---h---hhhhhcCCccCcHHHHhhhcCCCCCCCcEEecCCC
Q 032497 5 IQSFLSHGNIVKSAVLQRIRLVNPMLRPVVSSRFESVS---S---ARMEEHGFESTTISDILKAKGKGADGSWLWCTTDD 78 (139)
Q Consensus 5 ~~~~~~~~~i~~~~v~~~~~~~~~~~~~d~~~~~~~~~---~---~~~~~~~~~~~~v~dvm~~~~~~~~~~~~~v~~~~ 78 (139)
|+..|...+|+++.+|+.-+++...+..--.-.+.... . +.+.+..-...++..+|++ +.+.+.|++
T Consensus 10 lrk~Rk~LGitQ~dLA~~aGVSQ~~IArlE~G~vdPrlSt~k~Il~aL~e~e~~~ita~~iM~s-------pvv~v~pdD 82 (187)
T COG3620 10 LRKRRKELGITQKDLARRAGVSQPYIARLEAGKVDPRLSTVKRILEALEEAEKTRITAKTIMHS-------PVVSVSPDD 82 (187)
T ss_pred HHHHHHHcCCCHHHHHHHcCccHHHHHHHhcCCCCccHHHHHHHHHHHHHhhcceEeHhhhccC-------CeeEECchh
Confidence 67788999999999999988876543211111111111 0 1111222246789999999 899999999
Q ss_pred CHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCCCCccCccccccccCC
Q 032497 79 TVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEEV 139 (139)
Q Consensus 79 tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~~~~~~~v~~im~~~v 139 (139)
++.+++++|.++|++++||+ ++++++|-||..++.++.+.......+..|.++|..|+
T Consensus 83 si~~vv~lM~~~g~SQlPVi---~~~k~VGsItE~~iv~~~le~~e~i~~~~vr~vM~e~f 140 (187)
T COG3620 83 SISDVVNLMRDKGISQLPVI---EEDKVVGSITENDIVRALLEGMESIRSLRVREVMGEPF 140 (187)
T ss_pred hHHHHHHHHHHcCCccCcee---eCCeeeeeecHHHHHHHHhccccchhhhhHHHHhcCCC
Confidence 99999999999999999999 45999999999999998865445555677889998653
No 2
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=99.37 E-value=4.9e-12 Score=75.40 Aligned_cols=56 Identities=27% Similarity=0.510 Sum_probs=52.6
Q ss_pred HHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHH
Q 032497 56 ISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII 120 (139)
Q Consensus 56 v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~ 120 (139)
|+++|++ ++.++++++++.++++.|.+++++++||+ |++++++|++|.+||++++.
T Consensus 1 v~~~m~~-------~~~~v~~~~~l~~~~~~~~~~~~~~~~V~--d~~~~~~G~is~~dl~~~l~ 56 (57)
T PF00571_consen 1 VGDIMTP-------PPITVSPDDSLEEALEIMRKNGISRLPVV--DEDGKLVGIISRSDLLKALL 56 (57)
T ss_dssp HHHHSBS-------SSEEEETTSBHHHHHHHHHHHTSSEEEEE--STTSBEEEEEEHHHHHHHHH
T ss_pred CeECCcC-------CCEEEcCcCcHHHHHHHHHHcCCcEEEEE--ecCCEEEEEEEHHHHHhhhh
Confidence 6789998 89999999999999999999999999999 78899999999999998763
No 3
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=99.12 E-value=1.6e-10 Score=90.20 Aligned_cols=80 Identities=30% Similarity=0.410 Sum_probs=65.5
Q ss_pred CccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHc----CCCC
Q 032497 51 FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQ----GRSS 126 (139)
Q Consensus 51 ~~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~----~~~~ 126 (139)
+.+.++.|||++ +++++.+++++.+|.++|.+++++.+||+ |++.+++||||.+|+++..-.. =+..
T Consensus 242 ~~~LtcadIMSr-------dVvtv~~~ts~dhA~~ll~~H~ikaLPV~--d~~~rl~GiVt~~dl~~~a~~~p~qrlr~~ 312 (382)
T COG3448 242 MGELTCADIMSR-------DVVTVSTDTSIDHARKLLQEHRIKALPVL--DEHRRLVGIVTQRDLLKHARPSPFQRLRFL 312 (382)
T ss_pred hccccHHHhcCc-------cceecCCcCChHHHHHHHHHcCccccccc--ccccceeeeeeHHHHhhccCcchHHHhhcc
Confidence 456899999999 89999999999999999999999999999 8899999999999997732100 0112
Q ss_pred ccCccccccccCC
Q 032497 127 KSTKVGDIMTEEV 139 (139)
Q Consensus 127 ~~~~v~~im~~~v 139 (139)
....++.+|++++
T Consensus 313 ~~~~vk~imt~~v 325 (382)
T COG3448 313 RPPTVKGIMTTPV 325 (382)
T ss_pred CCCcccccccCcc
Confidence 3456888998664
No 4
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=99.05 E-value=6.3e-10 Score=85.21 Aligned_cols=62 Identities=32% Similarity=0.546 Sum_probs=57.5
Q ss_pred CCccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHH
Q 032497 50 GFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII 120 (139)
Q Consensus 50 ~~~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~ 120 (139)
+-...+|+|+|++ ++++++.++.+.||+++|..++++.+.|+ |.+|+++||+|+.|+++.+.
T Consensus 230 g~~~~kV~~~M~k-------~vitI~eDe~i~dAir~M~~~nVGRLlV~--ds~gkpvGiITrTDIL~~ia 291 (294)
T COG2524 230 GNLDAKVSDYMRK-------NVITINEDEDIYDAIRLMNKNNVGRLLVT--DSNGKPVGIITRTDILTRIA 291 (294)
T ss_pred CCccccHHHHhcc-------CCceEcCchhHHHHHHHHHhcCcceEEEE--ccCCcEEEEEehHHHHHHhh
Confidence 3356889999999 89999999999999999999999999999 78999999999999999874
No 5
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=99.05 E-value=5.3e-10 Score=85.61 Aligned_cols=75 Identities=25% Similarity=0.403 Sum_probs=66.0
Q ss_pred ccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCCCCccCcc
Q 032497 52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKV 131 (139)
Q Consensus 52 ~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~~~~~~~v 131 (139)
...+|.++|++ ++.++.+++|+.+|.+++.++++++.||+ | +++++|++|..|+..+++ +|. .+..|
T Consensus 170 Pk~~V~~~~s~-------~~i~v~~d~tl~eaak~f~~~~i~GaPVv--d-~dk~vGiit~~dI~~aia-~g~--~~~kV 236 (294)
T COG2524 170 PKEKVKNLMSK-------KLITVRPDDTLREAAKLFYEKGIRGAPVV--D-DDKIVGIITLSDIAKAIA-NGN--LDAKV 236 (294)
T ss_pred CcchhhhhccC-------CceEecCCccHHHHHHHHHHcCccCCcee--c-CCceEEEEEHHHHHHHHH-cCC--ccccH
Confidence 35789999999 89999999999999999999999999999 4 459999999999988774 553 58899
Q ss_pred ccccccCC
Q 032497 132 GDIMTEEV 139 (139)
Q Consensus 132 ~~im~~~v 139 (139)
+++|++.+
T Consensus 237 ~~~M~k~v 244 (294)
T COG2524 237 SDYMRKNV 244 (294)
T ss_pred HHHhccCC
Confidence 99998764
No 6
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=99.01 E-value=7.5e-10 Score=92.41 Aligned_cols=77 Identities=29% Similarity=0.504 Sum_probs=71.7
Q ss_pred cCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCCCCccCccc
Q 032497 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVG 132 (139)
Q Consensus 53 ~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~~~~~~~v~ 132 (139)
..+++++++. ++++|++..++.+|...|.++|++++.++ ++++.+.||||++|+.+++++.|.+ ...+|+
T Consensus 148 ~trv~~~~~~-------~~~~v~~~~~i~~aa~km~~~gv~s~v~l--~~~~~~~GIvT~~dl~~~v~~~g~~-~~~~V~ 217 (610)
T COG2905 148 LTRVGEVKTL-------PAVTVSPQASIQDAARKMKDEGVSSLVVL--DDSGPLLGIVTRKDLRSRVIADGRS-KTQKVS 217 (610)
T ss_pred HHHHHHHhcC-------CCcccCccCcHHHHHHHHHhcCCCeEEEE--cCCCCccceeehHHHHHHHHhcCCC-cccchh
Confidence 4679999998 89999999999999999999999999999 7899999999999999999998887 788999
Q ss_pred cccccCC
Q 032497 133 DIMTEEV 139 (139)
Q Consensus 133 ~im~~~v 139 (139)
++|+.|+
T Consensus 218 evmT~p~ 224 (610)
T COG2905 218 EVMTSPV 224 (610)
T ss_pred hhhccCc
Confidence 9999885
No 7
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=98.96 E-value=4.7e-09 Score=71.83 Aligned_cols=66 Identities=17% Similarity=0.199 Sum_probs=56.9
Q ss_pred CcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCCCCccCccccccccC
Q 032497 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEE 138 (139)
Q Consensus 70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~~~~~~~v~~im~~~ 138 (139)
++.++.+++++.++++.|.+++.+++||+ |++++++|++|.+|+++.+...... .+.+++++|+++
T Consensus 3 ~~~~v~~~~~v~~a~~~m~~~~~~~~~Vv--d~~~~~~Gii~~~dl~~~~~~~~~~-~~~~v~~im~~~ 68 (124)
T cd04608 3 APVTVLPTVTCAEAIEILKEKGFDQLPVV--DESGKILGMVTLGNLLSSLSSGKVQ-PSDPVSKALYKQ 68 (124)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEE--cCCCCEEEEEEHHHHHHHHHHhccC-CCCcHHHHhhcc
Confidence 68999999999999999999999999999 6789999999999998876543333 577899999765
No 8
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=98.88 E-value=1.1e-08 Score=81.11 Aligned_cols=79 Identities=23% Similarity=0.365 Sum_probs=63.9
Q ss_pred ccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCCCCccCcc
Q 032497 52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKV 131 (139)
Q Consensus 52 ~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~~~~~~~v 131 (139)
...+|+|+|++.. ++.++++++|+.+|++.|.+++.+.+||+ |++|+++|+||.+|+.+.. ..+....+.+|
T Consensus 200 ~~~~V~dim~~~~-----~~~~v~~~~sl~~a~~~~~~~~~~~~vVv--d~~g~lvGivt~~Dl~~~~-~~~~~~~~~~v 271 (326)
T PRK10892 200 LLLRVSDIMHTGD-----EIPHVSKTASLRDALLEITRKNLGMTVIC--DDNMKIEGIFTDGDLRRVF-DMGIDLRQASI 271 (326)
T ss_pred ccCcHHHHhCCCC-----CCeEECCCCCHHHHHHHHHhcCCCeEEEE--cCCCcEEEEEecHHHHHHH-hcCCCcccCCH
Confidence 4578999998511 48999999999999999999998888888 6789999999999997643 34433345689
Q ss_pred ccccccC
Q 032497 132 GDIMTEE 138 (139)
Q Consensus 132 ~~im~~~ 138 (139)
+++|+++
T Consensus 272 ~~im~~~ 278 (326)
T PRK10892 272 ADVMTPG 278 (326)
T ss_pred HHhcCCC
Confidence 9999875
No 9
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.85 E-value=7.9e-09 Score=68.89 Aligned_cols=55 Identities=20% Similarity=0.310 Sum_probs=50.5
Q ss_pred CcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHH
Q 032497 54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (139)
Q Consensus 54 ~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~ 117 (139)
.++.++|.. ++.++.+++++.+|++.|.+++.+.+||+ |++++++|+||.+|+++
T Consensus 56 ~~v~~~~~~-------~~~~v~~~~~l~~al~~m~~~~~~~lpVv--d~~~~~~Giit~~di~~ 110 (111)
T cd04603 56 LKVCEVYIV-------PVPIVYCDSKVTDLLRIFRETEPPVVAVV--DKEGKLVGTIYERELLR 110 (111)
T ss_pred cChhheeec-------CCcEECCCCcHHHHHHHHHHcCCCeEEEE--cCCCeEEEEEEhHHhhc
Confidence 469999987 78899999999999999999999999999 67799999999999864
No 10
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=98.85 E-value=1.2e-08 Score=80.60 Aligned_cols=75 Identities=21% Similarity=0.372 Sum_probs=63.6
Q ss_pred cCcHHHHhhhcCCCCCCC--cEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCCCCccCc
Q 032497 53 STTISDILKAKGKGADGS--WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTK 130 (139)
Q Consensus 53 ~~~v~dvm~~~~~~~~~~--~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~~~~~~~ 130 (139)
..+|+++|.+ + +.++++++++.+|++.|.+++...+||+ |++|+++|+||.+|+.+.+. .+.. .+.+
T Consensus 196 ~~~V~~im~~-------~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vv--d~~g~~iG~vt~~dl~~~~~-~~~~-~~~~ 264 (321)
T PRK11543 196 LNKVHHLMRR-------DDAIPQVALTASVMDAMLELSRTGLGLVAVC--DAQQQVQGVFTDGDLRRWLV-GGGA-LTTP 264 (321)
T ss_pred HhHHHHHhcc-------CCCCcEeCCCCCHHHHHHHHHHcCCCEEEEE--cCCCcEEEEecHHHHHHHHh-CCCC-cCCc
Confidence 4689999999 6 8999999999999999999999999999 78899999999999987653 3332 3566
Q ss_pred cccccccC
Q 032497 131 VGDIMTEE 138 (139)
Q Consensus 131 v~~im~~~ 138 (139)
+.++|+++
T Consensus 265 v~~im~~~ 272 (321)
T PRK11543 265 VNEAMTRG 272 (321)
T ss_pred HHHhcCCC
Confidence 88998765
No 11
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.82 E-value=3e-08 Score=66.11 Aligned_cols=67 Identities=33% Similarity=0.466 Sum_probs=54.7
Q ss_pred CcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCC-CceEEEEeHHHHHHHHHHcCCCCccCccccccccC
Q 032497 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQ-KSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEE 138 (139)
Q Consensus 70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~-~~lvGivt~~dll~~~~~~~~~~~~~~v~~im~~~ 138 (139)
++.++.+++++.+|++.|.+++++.+||+ |++ ++++|++|.+|+++++...+......++.++|..+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~--~~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~~~~~~ 69 (114)
T cd04630 2 NVVTIDGLATVAEALQLMKEHGVSSLVVE--KRRESDAYGIVTMRDILKKVVAEGRDPDRVNVYEIMTKP 69 (114)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCEEEEE--ECCCCcEEEEEehHHHHHHHHhCCCCCCccCHHHHhcCC
Confidence 58899999999999999999999999999 566 89999999999988765544332345678887543
No 12
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.79 E-value=2.8e-08 Score=66.46 Aligned_cols=57 Identities=21% Similarity=0.401 Sum_probs=51.8
Q ss_pred ccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHH
Q 032497 52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (139)
Q Consensus 52 ~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~ 117 (139)
...++.++|.+ ++.++.+++++.+|++.|.+++.+.+||+ |++++++|+||.+|+++
T Consensus 57 ~~~~v~~~~~~-------~~~~v~~~~~l~~a~~~m~~~~~~~lpVv--d~~~~~~Gvi~~~dl~~ 113 (114)
T cd04619 57 CTAPVENVMTR-------AVVSCRPGDLLHDVWQVMKQRGLKNIPVV--DENARPLGVLNARDALK 113 (114)
T ss_pred ccCCHHHHhcC-------CCeeECCCCCHHHHHHHHHHcCCCeEEEE--CCCCcEEEEEEhHhhcc
Confidence 34679999988 78999999999999999999999999999 67789999999999853
No 13
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=98.77 E-value=3.3e-08 Score=81.44 Aligned_cols=77 Identities=22% Similarity=0.310 Sum_probs=64.1
Q ss_pred ccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCCCCccCcc
Q 032497 52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKV 131 (139)
Q Consensus 52 ~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~~~~~~~v 131 (139)
...+++++|.+ ++.++.+++++.++++.|.+++++.+||+ |++++++|+||.+|+++.+...+.. .+.++
T Consensus 333 ~~~~v~~im~~-------~~~~v~~~~tl~ea~~~m~~~~~~~~~Vv--d~~~~~~Givt~~dl~~~~~~~~~~-~~~~v 402 (454)
T TIGR01137 333 KNATVKDLHLP-------APVTVHPTETVGDAIEILREYGFDQLPVV--TEAGKVLGSVTLRELLSALFAGKAN-PDDAV 402 (454)
T ss_pred ccCCHHHhCcC-------CCeEECCCCcHHHHHHHHHHcCCCEEEEE--cCCCeEEEEEEHHHHHHHHhccCCC-cCCCH
Confidence 35789999988 89999999999999999999999999999 6778999999999998866432222 34578
Q ss_pred ccccccC
Q 032497 132 GDIMTEE 138 (139)
Q Consensus 132 ~~im~~~ 138 (139)
.++|.++
T Consensus 403 ~~im~~~ 409 (454)
T TIGR01137 403 SKVMSKK 409 (454)
T ss_pred HHhcCCC
Confidence 8888754
No 14
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.74 E-value=3.3e-08 Score=66.76 Aligned_cols=55 Identities=27% Similarity=0.413 Sum_probs=50.7
Q ss_pred CcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHH
Q 032497 54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (139)
Q Consensus 54 ~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~ 117 (139)
.++.++|.+ ++.++.+++++.++++.|.+++...+||+ |++++++|+||.+|+.+
T Consensus 58 ~~v~dim~~-------~~~~v~~~~~l~~a~~~~~~~~~~~lpVv--d~~~~l~Givt~~dl~~ 112 (113)
T cd04597 58 PRVRDVINR-------KPVTARPNDPLREALNLMHEHNIRTLPVV--DDDGTPAGIITLLDLAE 112 (113)
T ss_pred hhHHHhcCC-------CCCEECCcCcHHHHHHHHHHcCCCEEEEE--CCCCeEEEEEEHHHhhc
Confidence 679999998 78999999999999999999999999999 77899999999999853
No 15
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.73 E-value=9.7e-08 Score=62.90 Aligned_cols=67 Identities=39% Similarity=0.587 Sum_probs=54.0
Q ss_pred CcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCCCCccCccccccccC
Q 032497 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEE 138 (139)
Q Consensus 70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~~~~~~~v~~im~~~ 138 (139)
++.++.+++++.++++.|.+++++.+||+ |++++++|+++.+|+++.+...+......++.++|.++
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~--~~~~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 68 (113)
T cd04623 2 DVITVRPDATVAEAAKLMAEKNIGAVVVV--DDGGRLVGIFSERDIVRKVALRGASALDTPVSEIMTRN 68 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEE--CCCCCEEEEEehHHHHHHHhhcCCCccccCHHHhcCCC
Confidence 57889999999999999999999999999 67789999999999988765433322245677777543
No 16
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=98.72 E-value=4.1e-08 Score=75.46 Aligned_cols=74 Identities=23% Similarity=0.434 Sum_probs=62.8
Q ss_pred CcHHHHhhhcCCCCCCC-cEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCCCCccCccc
Q 032497 54 TTISDILKAKGKGADGS-WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVG 132 (139)
Q Consensus 54 ~~v~dvm~~~~~~~~~~-~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~~~~~~~v~ 132 (139)
.+|+++|.+ + +.++.+++++.++++.|.+.+.+.+||+ |++++++|+|+..|+++.+. .+.. ...++.
T Consensus 155 ~~v~~im~~-------~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vv--d~~g~~~Givt~~dl~~~~~-~~~~-~~~~v~ 223 (268)
T TIGR00393 155 VKVKDLMQT-------TDLPLIAPTTSFKDALLEMSEKRLGSAIVC--DENNQLVGVFTDGDLRRALL-GGGS-LKSEVR 223 (268)
T ss_pred hhHHHHhCC-------CCCCcCCCCCcHHHHHHHHhhcCCcEEEEE--eCCCCEEEEEEcHHHHHHHh-cCCc-ccCcHH
Confidence 789999998 7 8999999999999999999999999999 67899999999999987543 2332 456788
Q ss_pred cccccC
Q 032497 133 DIMTEE 138 (139)
Q Consensus 133 ~im~~~ 138 (139)
++|.++
T Consensus 224 ~im~~~ 229 (268)
T TIGR00393 224 DFMTLG 229 (268)
T ss_pred HhCCCC
Confidence 888765
No 17
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.68 E-value=7e-08 Score=64.93 Aligned_cols=56 Identities=21% Similarity=0.368 Sum_probs=51.5
Q ss_pred cCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHH
Q 032497 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (139)
Q Consensus 53 ~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~ 117 (139)
..++.++|.+ ++.++++++++.++++.|.+++.+.+||+ +++|+++|++|..|+++
T Consensus 68 ~~~i~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv--~~~g~~~Gvit~~di~~ 123 (124)
T cd04600 68 PETVGDIMSP-------PVVTVRPDTPIAELVPLLADGGHHHVPVV--DEDRRLVGIVTQTDLIA 123 (124)
T ss_pred cccHHHhccC-------CCeeeCCCCcHHHHHHHHHhcCCCceeEE--cCCCCEEEEEEhHHhhc
Confidence 4579999988 79999999999999999999999999999 67899999999999864
No 18
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=98.68 E-value=6.5e-08 Score=82.21 Aligned_cols=78 Identities=13% Similarity=0.231 Sum_probs=64.2
Q ss_pred CccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCCCCccCc
Q 032497 51 FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTK 130 (139)
Q Consensus 51 ~~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~~~~~~~ 130 (139)
+...+++|+|++ ++.++++++++.++.+.|.+++.+.+||+ |++++++|+||.+|+.+.+...+ ...+.+
T Consensus 444 L~~~~V~dim~~-------~~~~v~~~~tl~ea~~~l~~~~~~~~~Vv--D~~g~lvGiVt~~dL~~~l~~~~-~~~~~~ 513 (574)
T PRK01862 444 LRTTQMRELIQP-------AQTVVPPTASVADMTRVFLEYPVKYLYVV--DDDGRFRGAVALKDITSDLLDKR-DTTDKT 513 (574)
T ss_pred HhhCcHHHHhcC-------CCceeCCCCCHHHHHHHHHhCCCceEEEE--cCCCeEEEEEEHHHHHHHhhccc-ccccch
Confidence 346799999998 78899999999999999999999999999 78899999999999987654322 212456
Q ss_pred cccccccC
Q 032497 131 VGDIMTEE 138 (139)
Q Consensus 131 v~~im~~~ 138 (139)
+.++|+++
T Consensus 514 v~dim~~~ 521 (574)
T PRK01862 514 AADYAHTP 521 (574)
T ss_pred HHHhccCC
Confidence 78888764
No 19
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=98.68 E-value=5.6e-08 Score=76.15 Aligned_cols=62 Identities=16% Similarity=0.321 Sum_probs=57.3
Q ss_pred CccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHH
Q 032497 51 FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIV 121 (139)
Q Consensus 51 ~~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~ 121 (139)
+...+++.+|++ +..++.++++..+++-.+.+.+..++||+ |++|+++||||..|++.++..
T Consensus 312 ~~~~~vk~imt~-------~v~tv~pdtpa~~lvp~lad~g~H~lpvl--d~~g~lvGIvsQtDliaal~r 373 (382)
T COG3448 312 LRPPTVKGIMTT-------PVVTVRPDTPAVELVPRLADEGLHALPVL--DAAGKLVGIVSQTDLIAALYR 373 (382)
T ss_pred cCCCcccccccC-------cceeecCCCcHHHHHHHhhcCCcceeeEE--cCCCcEEEEeeHHHHHHHHHH
Confidence 456789999998 79999999999999999999999999999 899999999999999988764
No 20
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.67 E-value=1.6e-07 Score=62.74 Aligned_cols=66 Identities=21% Similarity=0.306 Sum_probs=53.0
Q ss_pred cEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCCCCccCccccccccC
Q 032497 71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEE 138 (139)
Q Consensus 71 ~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~~~~~~~v~~im~~~ 138 (139)
+.++.+++++.+|++.|.+++.+.+||+ |++|+++|++|..|+++.+...+......++.++|..+
T Consensus 3 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vv--d~~g~~~G~vt~~dl~~~~~~~~~~~~~~~v~~~~~~~ 68 (114)
T cd04619 3 LAKIDVNATLQRAAKILGEPGIDLVVVC--DPHGKLAGVLTKTDVVRQMGRCGGPGCTAPVENVMTRA 68 (114)
T ss_pred eEEECCCCcHHHHHHHHHhcCCCEEEEE--CCCCCEEEEEehHHHHHHHhhcCCCcccCCHHHHhcCC
Confidence 6788999999999999999999999999 78899999999999987653312222356677777543
No 21
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=98.67 E-value=1.6e-07 Score=62.49 Aligned_cols=65 Identities=22% Similarity=0.315 Sum_probs=52.0
Q ss_pred CcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCCCCccCcccccccc
Q 032497 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTE 137 (139)
Q Consensus 70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~~~~~~~v~~im~~ 137 (139)
++.++.+++++.++++.|.+.+.+.+||+ |++++++|+++.+|+++.+. ++......++.++|..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~--d~~~~~~G~v~~~dl~~~~~-~~~~~~~~~~~~~~~~ 66 (115)
T cd04593 2 PPPVLSATTPLREAAEQLIESKHGSALVV--DRDGGVVGIITLPDLLRALE-ADEAGEPSAVDEVATP 66 (115)
T ss_pred CCcEeCCCCCHHHHHHHHHhCCCcEEEEE--cCCCCEEEEEEHHHHHHHHh-cccccccccHHHhccC
Confidence 67899999999999999999999999999 67899999999999987664 2222123446666654
No 22
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.66 E-value=1.2e-07 Score=62.94 Aligned_cols=56 Identities=16% Similarity=0.293 Sum_probs=50.9
Q ss_pred cCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHH
Q 032497 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (139)
Q Consensus 53 ~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~ 117 (139)
..++.++|.. ++.++++++++.++++.|.+++.+.+||+ +++++++|+||.+|++.
T Consensus 57 ~~~v~~~~~~-------~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv--~~~~~~~Gvit~~di~~ 112 (113)
T cd04607 57 DDPVSEVMNR-------NPITAKVGSSREEILALMRERSIRHLPIL--DEEGRVVGLATLDDLLS 112 (113)
T ss_pred CCCHHHhhcC-------CCEEEcCCCCHHHHHHHHHHCCCCEEEEE--CCCCCEEEEEEhHHhcc
Confidence 3579999987 78899999999999999999999999999 67899999999999863
No 23
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.64 E-value=2.4e-07 Score=61.18 Aligned_cols=65 Identities=35% Similarity=0.539 Sum_probs=52.9
Q ss_pred CcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCCCCccCccccccccC
Q 032497 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEE 138 (139)
Q Consensus 70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~~~~~~~v~~im~~~ 138 (139)
++.++.+++++.++++.|.+.+.+.+||+ |++++++|+++..|+++.+. .+.. ...++.++|..+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~--d~~~~~~G~v~~~~l~~~~~-~~~~-~~~~v~~~~~~~ 66 (112)
T cd04624 2 PVVTVDPDTSIREAAKLMAEENVGSVVVV--DPDERPIGIVTERDIVRAVA-AGID-LDTPVSEIMTRD 66 (112)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCCEEEEE--CCCCCEEEEeeHHHHHHHHh-ccCC-CccCHHHhccCC
Confidence 57889999999999999999999999999 67799999999999987654 3322 345677777543
No 24
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.64 E-value=1.6e-07 Score=62.32 Aligned_cols=66 Identities=23% Similarity=0.266 Sum_probs=52.1
Q ss_pred CcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCCCCc----cCcccccccc
Q 032497 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSK----STKVGDIMTE 137 (139)
Q Consensus 70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~~~~----~~~v~~im~~ 137 (139)
.+.++++++++.++++.|.+++++.+||+ |++++++|+++.+|+++.+........ ..++.++|.+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~--d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~v~~~~~~ 71 (116)
T cd04643 2 EVAYVQDTNTLRHALLVLTKHGYSAIPVL--DKEGKYVGTISLTDILWKLKGLENLDLERLVDLKVIDVMNT 71 (116)
T ss_pred CcEEECCCCcHHHHHHHHHHCCCceeeeE--CCCCcEEEEEeHHHHHHHhhccCchhHHHHhCCcHHHHhcC
Confidence 57889999999999999999999999999 778999999999999876532211101 3567777764
No 25
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.62 E-value=1.4e-07 Score=62.84 Aligned_cols=55 Identities=18% Similarity=0.281 Sum_probs=50.1
Q ss_pred cCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHH
Q 032497 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (139)
Q Consensus 53 ~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~ 117 (139)
..++.++|.. ++.++++++++.+|++.|.+++...+||+ ++ ++++|+||..|+++
T Consensus 59 ~~~v~~~~~~-------~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv--d~-~~~~Gvi~~~dl~~ 113 (114)
T cd04630 59 RVNVYEIMTK-------PLISVSPDMDIKYCARLMERTNIRRAPVV--EN-NELIGIISLTDIFL 113 (114)
T ss_pred ccCHHHHhcC-------CCeeECCCCCHHHHHHHHHHcCCCEeeEe--eC-CEEEEEEEHHHhhc
Confidence 4679999987 78999999999999999999999999999 55 99999999999864
No 26
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.62 E-value=1.7e-07 Score=62.33 Aligned_cols=56 Identities=16% Similarity=0.347 Sum_probs=49.7
Q ss_pred cCcHHHHhhhcCCCCCCCcEEecCC--CCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHH
Q 032497 53 STTISDILKAKGKGADGSWLWCTTD--DTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (139)
Q Consensus 53 ~~~v~dvm~~~~~~~~~~~~~v~~~--~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~ 117 (139)
..++.++|.. ++.++.++ +++.+|++.|.+++.+.+||+ |++|+++|+||.+|+++
T Consensus 57 ~~~i~~~~~~-------~~~~v~~~~~~~l~~a~~~~~~~~~~~~pVv--d~~~~~~Gvit~~dl~~ 114 (115)
T cd04620 57 DLPIGEVMTQ-------PVVTLQESEIQDIFTALSLFRQHQIRHLPVL--DDQGQLIGLVTAESIRQ 114 (115)
T ss_pred ccCHHHhcCC-------CcEEEecccccCHHHHHHHHHHhCCceEEEE--cCCCCEEEEEEhHHhhc
Confidence 3679999987 67888877 789999999999999999999 67799999999999865
No 27
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.61 E-value=1.8e-07 Score=61.76 Aligned_cols=57 Identities=28% Similarity=0.389 Sum_probs=51.8
Q ss_pred cCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHH
Q 032497 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRK 118 (139)
Q Consensus 53 ~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~ 118 (139)
..++.++|.+ ++.++.+++++.++++.|.+++...+||+ +++++++|++|..|+++.
T Consensus 52 ~~~v~~~~~~-------~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv--~~~~~~~Gvit~~dll~~ 108 (109)
T cd04606 52 DTPVSDIMDT-------DVISVSADDDQEEVARLFEKYDLLALPVV--DEEGRLVGIITVDDVIDV 108 (109)
T ss_pred cchHHHHhCC-------CCeEEcCCCCHHHHHHHHHHcCCceeeeE--CCCCcEEEEEEhHHhhhh
Confidence 4579999987 78999999999999999999999999999 678999999999999764
No 28
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=98.61 E-value=2.3e-07 Score=61.16 Aligned_cols=66 Identities=15% Similarity=0.205 Sum_probs=53.2
Q ss_pred CcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCCCCccCccccccccC
Q 032497 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEE 138 (139)
Q Consensus 70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~~~~~~~v~~im~~~ 138 (139)
++.++.+++++.++++.|.+++++.+||+ |++++++|+++..|+.+... .+......++.++|.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~~~~G~v~~~~l~~~~~-~~~~~~~~~v~~~~~~~ 67 (114)
T cd04613 2 DVVTIPEDTPLNELLDVIAHSPENNFPVV--DDDGRLVGIVSLDDIREILF-DPSLYDLVVASDIMTKP 67 (114)
T ss_pred CceeeCCCCcHHHHHHHHHhCCCcceeEE--CCCCCEEEEEEHHHHHHHHh-cccccccEEHHHhccCC
Confidence 57889999999999999999999999999 67789999999999987553 33322236677887654
No 29
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.60 E-value=2.4e-07 Score=61.11 Aligned_cols=56 Identities=25% Similarity=0.375 Sum_probs=51.2
Q ss_pred cCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHH
Q 032497 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (139)
Q Consensus 53 ~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~ 117 (139)
..++.++|.. ++.++.+++++.++++.|.+++...+||+ +++++++|++|..|+++
T Consensus 52 ~~~v~~~~~~-------~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv--~~~~~~~G~it~~di~~ 107 (108)
T cd04596 52 DTTIEKVMTK-------NPITVNPKTSVASVAHMMIWEGIEMLPVV--DDNKKLLGIISRQDVLK 107 (108)
T ss_pred cccHHHHhcC-------CCeEECCCCCHHHHHHHHHHcCCCeeeEE--cCCCCEEEEEEHHHhhc
Confidence 4579999987 78999999999999999999999999999 67889999999999864
No 30
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.60 E-value=8.7e-08 Score=63.08 Aligned_cols=55 Identities=20% Similarity=0.286 Sum_probs=46.9
Q ss_pred CcHHHHhhhcCCCCCCC-cEEecCCCCHHHHHHHHHHcCCCEEEEEecCCC-CceEEEEeHHHHHH
Q 032497 54 TTISDILKAKGKGADGS-WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQ-KSVAGIITERDYLR 117 (139)
Q Consensus 54 ~~v~dvm~~~~~~~~~~-~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~-~~lvGivt~~dll~ 117 (139)
.+..|+... - +.++.+++++.+|++.|.+++++.+||+ +++ |+++|++|.+|++.
T Consensus 41 vt~~Dl~~~-------~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv--d~~~~~~~giit~~d~~~ 97 (98)
T cd04618 41 LTITDFILI-------LRLVSIHPERSLFDAALLLLKNKIHRLPVI--DPSTGTGLYILTSRRILK 97 (98)
T ss_pred EEHHHHhhh-------eeeEEeCCCCcHHHHHHHHHHCCCCEeeEE--ECCCCCceEEeehhhhhc
Confidence 456666544 2 6889999999999999999999999999 555 89999999999864
No 31
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.60 E-value=1.6e-07 Score=63.13 Aligned_cols=59 Identities=24% Similarity=0.337 Sum_probs=50.0
Q ss_pred ccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCC---CceEEEEeHHHHHH
Q 032497 52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQ---KSVAGIITERDYLR 117 (139)
Q Consensus 52 ~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~---~~lvGivt~~dll~ 117 (139)
...++.++|.+.. ++.++.+++++.++++.|.+++...+||+ |++ ++++|+||..|+++
T Consensus 56 ~~~~~~~~~~~~~-----~~~~v~~~~~l~~~~~~~~~~~~~~lpVv--d~~~~~~~l~Gvit~~~l~~ 117 (118)
T cd04617 56 QKVPVGVIMTRMP-----NITTTTPEESVLEAAKKLIEHQVDSLPVV--EKVDEGLEVIGRITKTNITK 117 (118)
T ss_pred cCCCHHHHhCCCC-----CcEEECCCCcHHHHHHHHHHcCCCEeeEE--eCCCccceEEEEEEhhheec
Confidence 3567999997411 47899999999999999999999999999 454 79999999999854
No 32
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.60 E-value=2.7e-07 Score=61.03 Aligned_cols=66 Identities=27% Similarity=0.301 Sum_probs=52.5
Q ss_pred CcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCCCCccCccccccccC
Q 032497 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEE 138 (139)
Q Consensus 70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~~~~~~~v~~im~~~ 138 (139)
++.++.+++++.++++.|.+++.+.+||+ |++++++|+++.+|+++.....+. ....++.++|.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vv--d~~~~~~G~v~~~dl~~~~~~~~~-~~~~~i~~~~~~~ 67 (113)
T cd04615 2 KPSCVVLNTDIARAVAEMYTSGSRALPVV--DDKKRLVGIITRYDVLSYALESEE-LKDAKVREVMNSP 67 (113)
T ss_pred CCEEeeCCCcHHHHHHHHHHcCCceEeEE--cCCCCEEEEEEHHHHHHhhhhhhh-hcCCcHHHhccCC
Confidence 46888999999999999999999999999 678999999999999875443222 2345677777543
No 33
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.59 E-value=1.7e-07 Score=63.31 Aligned_cols=45 Identities=22% Similarity=0.311 Sum_probs=42.3
Q ss_pred CcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHH
Q 032497 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYL 116 (139)
Q Consensus 70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll 116 (139)
++.++.+++++.+|++.|.+++.+.+||+ |++++++|+||.+|+.
T Consensus 77 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVv--d~~~~~vGiit~~di~ 121 (123)
T cd04627 77 DVISINGDQPLIDALHLMHNEGISSVAVV--DNQGNLIGNISVTDVR 121 (123)
T ss_pred CceEeCCCCCHHHHHHHHHHcCCceEEEE--CCCCcEEEEEeHHHhh
Confidence 78999999999999999999999999999 6778999999999983
No 34
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.58 E-value=1.9e-07 Score=61.67 Aligned_cols=55 Identities=20% Similarity=0.347 Sum_probs=49.8
Q ss_pred cCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHH
Q 032497 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (139)
Q Consensus 53 ~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~ 117 (139)
..++.++|.. ++.++.+++++.+|++.|.+++...+||+ + +++++|++|.+|+++
T Consensus 57 ~~~v~~~~~~-------~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv--~-~~~~~Gvvt~~dl~~ 111 (112)
T cd04625 57 DTTVRAIMNP-------EPIVASPDDSIDEVRRLMVERHLRYLPVL--D-GGTLLGVISFHDVAK 111 (112)
T ss_pred cCCHHHHhCC-------CCeEECCCCCHHHHHHHHHHcCCCeeeEE--E-CCEEEEEEEHHHhhc
Confidence 4579999987 78899999999999999999999999999 4 589999999999864
No 35
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.57 E-value=2.6e-07 Score=60.44 Aligned_cols=56 Identities=27% Similarity=0.472 Sum_probs=50.6
Q ss_pred cCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHH
Q 032497 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (139)
Q Consensus 53 ~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~ 117 (139)
...+.++|.. ++.++.+++++.++++.|.+++...+||+ +++|+++|+++..|+++
T Consensus 51 ~~~~~~~~~~-------~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv--~~~g~~~Gvi~~~di~~ 106 (107)
T cd04610 51 DETVEEIMSK-------DLVVAVPEMDIMDAARVMFRTGISKLPVV--DENNNLVGIITNTDVIR 106 (107)
T ss_pred cccHHHhCCC-------CCeEECCCCCHHHHHHHHHHhCCCeEeEE--CCCCeEEEEEEHHHhhc
Confidence 3569999987 78999999999999999999999999999 67889999999999864
No 36
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=98.57 E-value=1.8e-07 Score=61.84 Aligned_cols=55 Identities=22% Similarity=0.323 Sum_probs=50.2
Q ss_pred CcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHH
Q 032497 54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (139)
Q Consensus 54 ~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~ 117 (139)
.++.++|.+ ++.++.+++++.++++.|.+++...+||+ +++++++|+||..|++.
T Consensus 58 ~~v~~i~~~-------~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv--~~~~~~~Gvvs~~dl~~ 112 (113)
T cd04587 58 TLVERVMTP-------NPVCATSDTPVLEALHLMVQGKFRHLPVV--DKSGQVVGLLDVTKLTH 112 (113)
T ss_pred CCHHHhcCC-------CCeEEcCCCCHHHHHHHHHHcCCCcccEE--CCCCCEEEEEEHHHhcc
Confidence 579999987 78899999999999999999999999999 66799999999999864
No 37
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=98.57 E-value=2.3e-07 Score=61.80 Aligned_cols=56 Identities=20% Similarity=0.347 Sum_probs=50.0
Q ss_pred cCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCC--CceEEEEeHHHHHH
Q 032497 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQ--KSVAGIITERDYLR 117 (139)
Q Consensus 53 ~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~--~~lvGivt~~dll~ 117 (139)
..++.++|.+ ++.++.+++++.++++.|.+++...+||+ |++ |+++|+||.+|+++
T Consensus 57 ~~~~~~~~~~-------~~~~v~~~~~l~~~l~~~~~~~~~~~~Vv--d~~~~~~~~Gvit~~di~~ 114 (115)
T cd04593 57 PSAVDEVATP-------PLLTVHPDEPLAHALDRMASRGLRQLPVV--DRGNPGQVLGLLTRENVLL 114 (115)
T ss_pred cccHHHhccC-------CceEECCCCCHHHHHHHHHHcCCceeeEE--eCCCCCeEEEEEEhHHhhc
Confidence 3458899988 79999999999999999999999999999 454 79999999999865
No 38
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=98.56 E-value=3.4e-07 Score=60.47 Aligned_cols=55 Identities=22% Similarity=0.333 Sum_probs=50.5
Q ss_pred CcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHH
Q 032497 54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (139)
Q Consensus 54 ~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~ 117 (139)
.++.++|.+ ++.++.+++++.++++.|..++...+||+ +++++++|+||..||++
T Consensus 59 ~~v~~~~~~-------~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv--~~~~~~iG~it~~di~~ 113 (114)
T cd04604 59 LPVADVMTR-------NPKTIDPDALAAEALELMEENKITALPVV--DDNGRPVGVLHIHDLLR 113 (114)
T ss_pred CCHHHhhcc-------CCeEECCCCcHHHHHHHHHHcCCCEEEEE--CCCCCEEEEEEHHHhhc
Confidence 479999988 78899999999999999999999999999 66899999999999864
No 39
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.56 E-value=4.4e-07 Score=60.90 Aligned_cols=64 Identities=31% Similarity=0.518 Sum_probs=52.3
Q ss_pred CcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCCCCccCccccccc
Q 032497 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMT 136 (139)
Q Consensus 70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~~~~~~~v~~im~ 136 (139)
++.++.+++++.+|++.|..++.+++||+ |++++++|+||..|++++... +......+++++|.
T Consensus 2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~--d~~~~~~Givt~~dl~~~~~~-~~~~~~~~~~~~~~ 65 (118)
T cd04617 2 PPVVVRENTSVYDAIVTLFLEDVGSLFVV--DEDGDLVGVVSRKDLLKASIG-GADLQKVPVGVIMT 65 (118)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEE--cCCCCEEEEEEHHHHHHHHHc-CCCccCCCHHHHhC
Confidence 57899999999999999999999999999 678999999999999887643 22223455667775
No 40
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.56 E-value=3.5e-07 Score=60.48 Aligned_cols=57 Identities=25% Similarity=0.458 Sum_probs=51.3
Q ss_pred ccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHH
Q 032497 52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (139)
Q Consensus 52 ~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~ 117 (139)
...++.++|.. ++.++.+++++.++++.|.+++...+||+ +++|+++|++|..|+++
T Consensus 56 ~~~~i~~~~~~-------~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv--d~~g~~~Gvvt~~dl~~ 112 (113)
T cd04615 56 KDAKVREVMNS-------PVITIDANDSIAKARWLMSNNNISRLPVL--DDKGKVGGIVTEDDILR 112 (113)
T ss_pred cCCcHHHhccC-------CceEECCCCcHHHHHHHHHHcCCCeeeEE--CCCCeEEEEEEHHHhhc
Confidence 34679999987 78999999999999999999999999999 67889999999999864
No 41
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.56 E-value=2.7e-07 Score=62.08 Aligned_cols=56 Identities=34% Similarity=0.557 Sum_probs=50.8
Q ss_pred cCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHH
Q 032497 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (139)
Q Consensus 53 ~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~ 117 (139)
..++.++|.+ ++.++.+++++.++++.|.+.+.+.+||+ +++++++|+||..|+++
T Consensus 69 ~~~~~~~~~~-------~~~~v~~~~~l~~~~~~~~~~~~~~~~V~--~~~~~~~Gvit~~di~~ 124 (125)
T cd04631 69 NEPVRSIMTR-------NVITITPDDSIKDAAELMLEKRVGGLPVV--DDDGKLVGIVTERDLLK 124 (125)
T ss_pred hcCHHHHhcC-------CceEeCCCCcHHHHHHHHHHcCCceEEEE--cCCCcEEEEEEHHHhhc
Confidence 3579999987 79999999999999999999999999999 56689999999999865
No 42
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.55 E-value=4e-07 Score=60.04 Aligned_cols=56 Identities=23% Similarity=0.433 Sum_probs=50.9
Q ss_pred ccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHH
Q 032497 52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (139)
Q Consensus 52 ~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~ 117 (139)
...++.++|.. ++.++.+++++.++++.|.+++.+.+||+ + +|+++|+||..|+++
T Consensus 54 ~~~~~~~~~~~-------~~~~v~~~~~l~~~~~~~~~~~~~~~~V~--~-~~~~~Gvvt~~di~~ 109 (110)
T cd04595 54 GHAPVKDYMST-------DVVTVPPDTPLSEVQELMVEHDIGRVPVV--E-DGRLVGIVTRTDLLR 109 (110)
T ss_pred ccCcHHHHhcC-------CCEEECCCCcHHHHHHHHHHcCCCeeEEE--e-CCEEEEEEEhHHhhc
Confidence 45689999988 78999999999999999999999999999 5 789999999999864
No 43
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.55 E-value=3.4e-07 Score=60.54 Aligned_cols=66 Identities=24% Similarity=0.369 Sum_probs=52.6
Q ss_pred CcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCC-CCccCcccccccc
Q 032497 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGR-SSKSTKVGDIMTE 137 (139)
Q Consensus 70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~-~~~~~~v~~im~~ 137 (139)
++.++.+++++.+|++.|.+++.+.+||+ +++++++|+++..|+++.+..... .....++.++|..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~--~~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~v~~~~~~ 68 (114)
T cd04629 2 NPVTFTPDMSVTEAVEKLLKSKISGGPVV--DDNGNLVGFLSEQDCLKQLLESSYHCDGVATVRDIMTT 68 (114)
T ss_pred CCeEeCCCCCHHHHHHHHHhcCCCCccEE--CCCCeEEEEeehHHHHHHhhhhhhccCCCccHHHHhcc
Confidence 57889999999999999999999999999 778999999999999886653221 1124567777754
No 44
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.54 E-value=3.2e-07 Score=61.51 Aligned_cols=56 Identities=34% Similarity=0.560 Sum_probs=51.1
Q ss_pred cCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHH
Q 032497 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (139)
Q Consensus 53 ~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~ 117 (139)
..++.++|.. ++.++.+++++.++++.|.+++.+.+||+ +++|+++|++|..|+++
T Consensus 66 ~~~~~~~~~~-------~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv--d~~g~~~Gvit~~dl~~ 121 (122)
T cd04635 66 SPTVEKIMST-------PVYSVTPDDSIATAVELMLEHDIGRLPVV--NEKDQLVGIVDRHDVLK 121 (122)
T ss_pred cCcHHHHhcC-------CCeeECCCCCHHHHHHHHHHcCCCeeeEE--cCCCcEEEEEEhHHhhc
Confidence 4678999987 78999999999999999999999999999 67799999999999864
No 45
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=98.54 E-value=2.9e-07 Score=72.92 Aligned_cols=56 Identities=18% Similarity=0.361 Sum_probs=51.4
Q ss_pred cCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHH
Q 032497 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRK 118 (139)
Q Consensus 53 ~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~ 118 (139)
..++.++|++ ++.++.+++++.+|++.|.+++.+.+||+ ++++++|+||+.|++++
T Consensus 268 ~~~v~~im~~-------~~~~v~~~~~l~~a~~~m~~~~~~~lpVv---~~~~lvGiit~~dil~~ 323 (326)
T PRK10892 268 QASIADVMTP-------GGIRVRPGILAVDALNLMQSRHITSVLVA---DGDHLLGVLHMHDLLRA 323 (326)
T ss_pred cCCHHHhcCC-------CCEEECCCCCHHHHHHHHHHCCCcEEEEe---eCCEEEEEEEhHHhHhc
Confidence 4689999998 89999999999999999999999999999 36799999999999764
No 46
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=98.54 E-value=4e-07 Score=71.84 Aligned_cols=57 Identities=18% Similarity=0.279 Sum_probs=52.3
Q ss_pred cCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHH
Q 032497 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRK 118 (139)
Q Consensus 53 ~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~ 118 (139)
..++.++|++ ++.++.+++++.+|++.|.+++...+||+ |++++++|+||++|++++
T Consensus 262 ~~~v~~im~~-------~~~~v~~~~~l~~a~~~m~~~~~~~lpVv--d~~~~lvGvIt~~di~~~ 318 (321)
T PRK11543 262 TTPVNEAMTR-------GGTTLQAQSRAIDAKEILMKRKITAAPVV--DENGKLTGAINLQDFYQA 318 (321)
T ss_pred CCcHHHhcCC-------CCEEECCCCCHHHHHHHHHHcCCCEEEEE--cCCCeEEEEEEHHHHHhc
Confidence 4569999998 78999999999999999999999999999 677899999999999764
No 47
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=98.54 E-value=3.9e-07 Score=60.64 Aligned_cols=56 Identities=32% Similarity=0.479 Sum_probs=51.1
Q ss_pred cCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHH
Q 032497 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (139)
Q Consensus 53 ~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~ 117 (139)
..++.++|.+ ++.++++++++.++++.|.+.+.+.+||+ +++|+++|+||..|+++
T Consensus 66 ~~~~~~~~~~-------~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv--~~~~~~~Gvvt~~di~~ 121 (122)
T cd04585 66 KIKVSDIMTR-------DPITVSPDASVEEAAELMLERKISGLPVV--DDQGRLVGIITESDLFR 121 (122)
T ss_pred ccCHHHhccC-------CCeEeCCCCcHHHHHHHHHHcCCCceeEE--CCCCcEEEEEEHHHhhh
Confidence 4679999988 78999999999999999999999999999 66789999999999864
No 48
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=98.54 E-value=4.2e-07 Score=59.42 Aligned_cols=54 Identities=20% Similarity=0.206 Sum_probs=49.0
Q ss_pred cHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHH
Q 032497 55 TISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (139)
Q Consensus 55 ~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~ 117 (139)
++.++|.+ .+.++.+++++.++++.|.+++.+.+||+ |++++++|++|.+++++
T Consensus 52 ~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~Vv--~~~~~~~Gvi~~~~l~~ 105 (106)
T cd04582 52 CCGDHAEP-------FKVTVSVDDDLRIVLSRMFAHDMSWLPCV--DEDGRYVGEVTQRSIAD 105 (106)
T ss_pred chhhhccc-------CCEEECCCCCHHHHHHHHHHCCCCeeeEE--CCCCcEEEEEEHHHhhc
Confidence 58888887 67889999999999999999999999999 67789999999999864
No 49
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.53 E-value=4.7e-07 Score=60.84 Aligned_cols=48 Identities=19% Similarity=0.270 Sum_probs=44.5
Q ss_pred CcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHH
Q 032497 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKI 119 (139)
Q Consensus 70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~ 119 (139)
++.++++++++.+|++.|.+++++.+||+ |++++++|+++.+|+++..
T Consensus 2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv--~~~~~~~Giv~~~dl~~~~ 49 (120)
T cd04641 2 NIATARPDTPLIDVLDMLVERRVSALPIV--DENGKVVDVYSRFDVINLA 49 (120)
T ss_pred CcEEEcCCCCHHHHHHHHHHcCCCeeeEE--CCCCeEEEEEeHHHHHHHH
Confidence 58899999999999999999999999999 6789999999999998654
No 50
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.53 E-value=4.9e-07 Score=60.12 Aligned_cols=64 Identities=22% Similarity=0.276 Sum_probs=51.2
Q ss_pred CcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCCCCccCccccccccC
Q 032497 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEE 138 (139)
Q Consensus 70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~~~~~~~v~~im~~~ 138 (139)
++.++++++++.+|++.|.+.+.+.+||+ |++++++|++|..|+.+.. .+ ...+.++.++|..+
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~V~--d~~~~~~G~v~~~dl~~~~--~~-~~~~~~v~~~~~~~ 65 (111)
T cd04603 2 QTVSVNCENPLREAIKMINELGARAVVVV--DEENKVLGQVTLSDLLEIG--PN-DYETLKVCEVYIVP 65 (111)
T ss_pred ceEEeCCCCcHHHHHHHHHHcCCCEEEEE--cCCCCEEEEEEHHHHHhhc--cc-cccccChhheeecC
Confidence 47889999999999999999999999999 7789999999999997632 11 11245677888654
No 51
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.52 E-value=5.4e-07 Score=61.22 Aligned_cols=66 Identities=30% Similarity=0.407 Sum_probs=51.6
Q ss_pred CcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHH-----HHHcCCCCccCcccccccc
Q 032497 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRK-----IIVQGRSSKSTKVGDIMTE 137 (139)
Q Consensus 70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~-----~~~~~~~~~~~~v~~im~~ 137 (139)
++.++.+++++.+|++.|.+++...+||+ |++++++|+++..|+.+. +...+....+.++.++|++
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~--d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~v~~im~~ 72 (126)
T cd04640 2 KPIVIPADTSIDEALELMIKHGVRLLLVV--DSDDNFIGVITAVDLLGEEPIKRIQEGGISRSELTVADVMTP 72 (126)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCcEEEEE--cCCCcEEEEEEHHHHhhChhhHHHHHcCCCchheEHHHhcCc
Confidence 57889999999999999999999999999 678999999999999752 2221112234567888864
No 52
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.52 E-value=2.6e-07 Score=63.49 Aligned_cols=55 Identities=20% Similarity=0.385 Sum_probs=50.6
Q ss_pred cCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHH
Q 032497 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (139)
Q Consensus 53 ~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~ 117 (139)
..++.++|.+ ++..+.+++++.++++.|.+++.+.+||+ | +|+++|++|..|+++
T Consensus 80 ~~~v~~~~~~-------~~~~v~~~~~~~~~~~~~~~~~~~~l~Vv--d-~g~~~Gvit~~di~~ 134 (135)
T cd04586 80 GRKVADVMTR-------PVVTVGEDTPLAEVAELMEEHRIKRVPVV--R-GGRLVGIVSRADLLR 134 (135)
T ss_pred CCCHHHHhCC-------CceEeCCCCcHHHHHHHHHHcCCCccCEe--c-CCEEEEEEEhHhhhc
Confidence 4679999987 78999999999999999999999999999 6 799999999999864
No 53
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=98.52 E-value=4.6e-07 Score=59.32 Aligned_cols=55 Identities=18% Similarity=0.292 Sum_probs=50.2
Q ss_pred CcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHH
Q 032497 54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (139)
Q Consensus 54 ~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~ 117 (139)
.++.++|.. .+.++++++++.++++.|.+++...+||+ +++|+++|++|.+|+++
T Consensus 54 ~~v~~~~~~-------~~~~v~~~~~~~~~~~~~~~~~~~~~~vv--~~~g~~~Gvit~~~l~~ 108 (109)
T cd04583 54 KSLEDIMLE-------DVFTVQPDASLRDVLGLVLKRGPKYVPVV--DEDGKLVGLITRSSLVD 108 (109)
T ss_pred CcHhHhhcC-------CceEECCCCcHHHHHHHHHHcCCceeeEE--CCCCeEEEEEehHHhhc
Confidence 568899987 78999999999999999999999999999 67889999999999864
No 54
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.51 E-value=5.3e-07 Score=62.50 Aligned_cols=49 Identities=22% Similarity=0.344 Sum_probs=44.7
Q ss_pred CcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHH
Q 032497 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII 120 (139)
Q Consensus 70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~ 120 (139)
++.++.+++++.+|++.|.+.+.+.+||+ |++++++|+++..|+++...
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~l~V~--d~~~~~~Giv~~~dl~~~~~ 50 (135)
T cd04621 2 DIATVHPEHSLLHVVDEMEKNGVGRVIVV--DDNGKPVGVITYRDLAFAEF 50 (135)
T ss_pred CceEeCCCCcHHHHHHHHHHcCCCcceEE--CCCCCEEEEEeHHHHHHHhh
Confidence 57889999999999999999999999999 77899999999999988653
No 55
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.51 E-value=2.7e-07 Score=61.34 Aligned_cols=58 Identities=24% Similarity=0.454 Sum_probs=49.4
Q ss_pred cCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHH
Q 032497 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (139)
Q Consensus 53 ~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~ 117 (139)
..++.++|.+.. .+.++.+++++.+|++.|.+++.+.+||+ +++++++|++|.+|+++
T Consensus 56 ~~~v~~~~~~~~-----~~~~v~~~~~l~~a~~~~~~~~~~~l~Vv--~~~~~~~Gvl~~~di~~ 113 (114)
T cd04801 56 QTTVIQVMTPAA-----KLVTVLSEESLAEVLKLLEEQGLDELAVV--EDSGQVIGLITEADLLR 113 (114)
T ss_pred ccchhhhhcccc-----cceEECCCCcHHHHHHHHHHCCCCeeEEE--cCCCcEEEEEeccceec
Confidence 457889997511 35689999999999999999999999999 66789999999999853
No 56
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=98.51 E-value=5.8e-07 Score=59.04 Aligned_cols=57 Identities=26% Similarity=0.533 Sum_probs=51.1
Q ss_pred ccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHH
Q 032497 52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (139)
Q Consensus 52 ~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~ 117 (139)
...++.++|.+ ++.++.+++++.++++.|.+.+...+||+ |++|+++|++|.+|+++
T Consensus 54 ~~~~v~~~~~~-------~~~~~~~~~~l~~~l~~~~~~~~~~~~Vv--~~~~~~~Gvi~~~di~~ 110 (111)
T cd04611 54 LQTPVGEVMSS-------PLLTVPADTSLYDARQLMREHGIRHLVVV--DDDGELLGLLSQTDLLQ 110 (111)
T ss_pred CCcCHHHhcCC-------CceEECCCCCHHHHHHHHHHcCCeEEEEE--CCCCcEEEEEEhHHhhc
Confidence 34679999987 78999999999999999999999999999 67789999999999864
No 57
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=98.50 E-value=4.9e-07 Score=60.23 Aligned_cols=55 Identities=16% Similarity=0.314 Sum_probs=48.4
Q ss_pred CcHHHHhhhcCCCCCCCcEEecC--CCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHH
Q 032497 54 TTISDILKAKGKGADGSWLWCTT--DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (139)
Q Consensus 54 ~~v~dvm~~~~~~~~~~~~~v~~--~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~ 117 (139)
.++.++|.. ++.++.. ++++.++++.|.+++...+||+ +++++++|+||.+|+++
T Consensus 57 ~~v~~~~~~-------~~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv--~~~~~~~Gvit~~di~~ 113 (114)
T cd04602 57 TPLSEVMTP-------REVLVVAPTGITLEEANEILRESKKGKLPIV--NDDGELVALVTRSDLKK 113 (114)
T ss_pred CCHHHhcCC-------CceEEECCCCCCHHHHHHHHHhcCCCceeEE--CCCCeEEEEEEHHHhhc
Confidence 469999987 6667755 9999999999999999999999 67889999999999853
No 58
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.50 E-value=3.2e-07 Score=60.70 Aligned_cols=55 Identities=29% Similarity=0.426 Sum_probs=49.8
Q ss_pred cCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHH
Q 032497 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (139)
Q Consensus 53 ~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~ 117 (139)
..++.++|.. ++.++.+++++.++++.|.+++.+.+||+ ++ |+++|++|.+|+++
T Consensus 59 ~~~v~~~~~~-------~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv--~~-~~~~Gvit~~di~~ 113 (114)
T cd04629 59 VATVRDIMTT-------EVLTVSPDDSIVDLAQLMLKAKPKRYPVV--DD-GKLVGQISRRDVLR 113 (114)
T ss_pred CccHHHHhcc-------CceEECCCCcHHHHHHHHHHhCCCccCEE--EC-CEEEEEEEHHHHhc
Confidence 4679999987 78999999999999999999999999999 45 89999999999864
No 59
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=98.50 E-value=9.4e-07 Score=58.30 Aligned_cols=66 Identities=27% Similarity=0.381 Sum_probs=52.2
Q ss_pred CcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCCCCccCccccccccC
Q 032497 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEE 138 (139)
Q Consensus 70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~~~~~~~v~~im~~~ 138 (139)
++.++.+++++.++++.|.+++.+.+||+ ++ ++++|+++..|+++.+...+......++.++|..+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~--~~-~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~i~~~~ 67 (113)
T cd04587 2 KPATVSPTTTVQEAAKLMREKRVSCVLVM--DG-NKLVGIFTSKDIALRVVAQGLDPESTLVERVMTPN 67 (113)
T ss_pred CCeEeCCCCCHHHHHHHHHHcCCCeEEEE--EC-CEEEEEEEhHHHHHHHHhcCCCcCcCCHHHhcCCC
Confidence 57889999999999999999999999999 55 99999999999986655444332225677777543
No 60
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=98.49 E-value=7.3e-07 Score=58.38 Aligned_cols=64 Identities=34% Similarity=0.455 Sum_probs=50.8
Q ss_pred CcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCCCCccCcccccccc
Q 032497 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTE 137 (139)
Q Consensus 70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~~~~~~~v~~im~~ 137 (139)
++.++.+++++.++++.|.+++.+.+||+ ++ ++++|++|..|+.+.+.. +......++.++|.+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~--~~-~~~~G~v~~~dl~~~~~~-~~~~~~~~~~~~~~~ 65 (110)
T cd04609 2 DVVSVAPDDTVSQAIERMREYGVSQLPVV--DD-GRVVGSIDESDLLDALIE-GKAKFSLPVREVMGE 65 (110)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCceeeEe--eC-CeeEEEEeHHHHHHHHhc-cccccCcCHHHHhcC
Confidence 57889999999999999999999999999 55 899999999999886532 222123456666654
No 61
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.49 E-value=1e-06 Score=58.17 Aligned_cols=65 Identities=37% Similarity=0.652 Sum_probs=50.9
Q ss_pred CcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCCCCccCcccccccc
Q 032497 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTE 137 (139)
Q Consensus 70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~~~~~~~v~~im~~ 137 (139)
++.++.+++++.+|.+.|.+.+.+++||+ ++ ++++|+++..|++......+......++.++|..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~--~~-~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~ 66 (113)
T cd04622 2 DVVTVSPDDTIREAARLMREHDVGALPVC--EN-DRLVGIVTDRDIVVRAVAEGRDPDTTTVGDVMTR 66 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEe--eC-CEEEEEEEhHHHHHHHhhccCCcccCCHHHhccC
Confidence 57889999999999999999999999999 55 9999999999987444434433222347777754
No 62
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=98.49 E-value=2.8e-07 Score=75.56 Aligned_cols=78 Identities=12% Similarity=0.249 Sum_probs=62.0
Q ss_pred CCccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCCCCccC
Q 032497 50 GFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKST 129 (139)
Q Consensus 50 ~~~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~~~~~~ 129 (139)
.+...+|+|+|++.. ++.+++.++++.++++.+.+++++.+||++ ++.++++|+|+.+|++.... + ...
T Consensus 187 ~l~~~~v~diMtpr~-----~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~-~~~d~ivGiv~~kDll~~~~--~---~~~ 255 (408)
T TIGR03520 187 SFGNTDTKQVMRPRL-----DIFALDIETSFSEIIPKIIENGYSRIPVYK-ETIDNITGVLYIKDLLPHLN--K---KNF 255 (408)
T ss_pred ccCCCEeeeeCCchH-----hEEEEECCCCHHHHHHHHHhCCCCEEEEEc-CCCCceEEEEEHHHHHhHhc--c---CCC
Confidence 456789999999854 689999999999999999999999999994 23479999999999986431 1 123
Q ss_pred ccccccccC
Q 032497 130 KVGDIMTEE 138 (139)
Q Consensus 130 ~v~~im~~~ 138 (139)
++.++|+++
T Consensus 256 ~l~~~~~~~ 264 (408)
T TIGR03520 256 DWQSLLREP 264 (408)
T ss_pred CHHHHcCCC
Confidence 456666654
No 63
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.49 E-value=6.1e-07 Score=62.20 Aligned_cols=55 Identities=31% Similarity=0.471 Sum_probs=49.8
Q ss_pred cCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHH
Q 032497 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (139)
Q Consensus 53 ~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~ 117 (139)
..++.++|.+ ++..+.+++++.++++.|.+++.+.+||+ ++ ++++|+||..|+++
T Consensus 80 ~~~v~~~~~~-------~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv--~~-~~~~Gvit~~di~~ 134 (135)
T cd04621 80 PLVAEDIMTE-------EIITVSPNDDVVDAAKLMLEANISGLPVV--DN-DNIVGVITKTDICR 134 (135)
T ss_pred cccHHHhcCC-------CCeEECCCCCHHHHHHHHHHcCCCEEEEE--eC-CEEEEEEEHHHHhh
Confidence 4579999987 78899999999999999999999999999 44 89999999999864
No 64
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.49 E-value=4.3e-07 Score=61.04 Aligned_cols=46 Identities=35% Similarity=0.467 Sum_probs=42.7
Q ss_pred CcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHH
Q 032497 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (139)
Q Consensus 70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~ 117 (139)
++.++.+++++.++++.|.+++.+.+||+ |++++++|+||..|+++
T Consensus 74 ~~~~v~~~~~l~~~~~~m~~~~~~~l~Vv--d~~~~~~Givt~~di~~ 119 (120)
T cd04641 74 GVRTCSPDDCLRTIFDLIVKARVHRLVVV--DENKRVEGIISLSDILQ 119 (120)
T ss_pred CCeEEcCCCcHHHHHHHHHhcCccEEEEE--CCCCCEEEEEEHHHhhc
Confidence 57899999999999999999999999999 66789999999999864
No 65
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.49 E-value=7.6e-07 Score=59.64 Aligned_cols=56 Identities=30% Similarity=0.579 Sum_probs=50.8
Q ss_pred cCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHH
Q 032497 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (139)
Q Consensus 53 ~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~ 117 (139)
..++.++|.. ++.++.+++++.++++.|.+++.+.+||+ +++++++|++|..|+++
T Consensus 66 ~~~v~~~~~~-------~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv--~~~~~~~Gvit~~dl~~ 121 (122)
T cd04803 66 DVPVAEVMKT-------DVLTVTPDTPLREAAEIMVENKIGCLPVV--DDKGTLVGIITRSDFLR 121 (122)
T ss_pred CcCHHHhhCC-------CCeEeCCCCcHHHHHHHHHHcCCCeEEEE--cCCCCEEEEEEHHHhhc
Confidence 4679999987 78999999999999999999999999999 66689999999999864
No 66
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=98.49 E-value=8.5e-07 Score=61.78 Aligned_cols=50 Identities=20% Similarity=0.323 Sum_probs=46.0
Q ss_pred CcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHH
Q 032497 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIV 121 (139)
Q Consensus 70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~ 121 (139)
++.++.+++++.+|++.|.+++.+.+||+ |++++++|++|.+|+++++..
T Consensus 2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~Vv--D~~g~l~Givt~~Dl~~~~~~ 51 (133)
T cd04592 2 KYIKVSPTTTLKEALNLMLDEKQSCVLVV--DSDDFLEGILTLGDIQRFLFT 51 (133)
T ss_pred CceEECCCCCHHHHHHHHHHcCCCEEEEE--CCCCeEEEEEEHHHHHHHHhh
Confidence 58899999999999999999999999999 778999999999999987753
No 67
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.49 E-value=5.9e-07 Score=59.21 Aligned_cols=56 Identities=14% Similarity=0.237 Sum_probs=50.3
Q ss_pred cCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHH
Q 032497 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (139)
Q Consensus 53 ~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~ 117 (139)
..++.++|.. ++.++.+++++.+|++.|.+++...+||+ +++++++|++|..|+..
T Consensus 55 ~~~v~~~~~~-------~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv--~~~~~~~G~it~~dl~~ 110 (111)
T cd04639 55 DAPVRGVMRR-------DFPTVSPSATLDAVLRLMQQGGAPAVPVV--DGSGRLVGLVTLENVGE 110 (111)
T ss_pred CCcHHHHhcC-------CCcEECCCCcHHHHHHHHHhcCCceeeEE--cCCCCEEEEEEHHHhhc
Confidence 3479999987 78999999999999999999999999999 66689999999999853
No 68
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.48 E-value=6.2e-07 Score=60.85 Aligned_cols=58 Identities=31% Similarity=0.543 Sum_probs=50.3
Q ss_pred cCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHH
Q 032497 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (139)
Q Consensus 53 ~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~ 117 (139)
..++.++|.+ ++.++.+++++.++++.|.+.+...+||++.+++++++|+||.+|+++
T Consensus 70 ~~~~~~~~~~-------~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~~ 127 (128)
T cd04632 70 DLPVYDAMSS-------PVITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVLR 127 (128)
T ss_pred cCcHHHHhcC-------CCceECCCCcHHHHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhhc
Confidence 4579999988 789999999999999999999999999983224689999999999864
No 69
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=98.48 E-value=6.3e-07 Score=59.07 Aligned_cols=55 Identities=29% Similarity=0.479 Sum_probs=49.9
Q ss_pred cCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHH
Q 032497 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (139)
Q Consensus 53 ~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~ 117 (139)
..++.++|.. ++.++++++++.++++.|.+++.+++||+ ++ ++++|++|.+|+++
T Consensus 56 ~~~i~~~~~~-------~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv--~~-~~~~Giit~~di~~ 110 (111)
T cd04800 56 DTPVSEVMTA-------PPITIPPDATVFEALLLMLERGIHHLPVV--DD-GRLVGVISATDLLR 110 (111)
T ss_pred cCCHHHHhCC-------CCeEECCCCcHHHHHHHHHHcCCCeeeEe--EC-CEEEEEEEHHHhhc
Confidence 3679999988 78999999999999999999999999999 44 89999999999864
No 70
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.48 E-value=6.3e-07 Score=58.40 Aligned_cols=54 Identities=19% Similarity=0.341 Sum_probs=49.1
Q ss_pred cCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHH
Q 032497 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYL 116 (139)
Q Consensus 53 ~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll 116 (139)
..++.++|.+ ++.++++++++.++++.|.+++.+.+||+ ++ ++++|++|..|++
T Consensus 50 ~~~~~~~~~~-------~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv--~~-~~~~G~it~~~l~ 103 (105)
T cd04599 50 NRLVADAMTR-------EVVTISPEASLLEAKRLMEEKKIERLPVL--RE-RKLVGIITKGTIA 103 (105)
T ss_pred cCCHHHHccC-------CCEEECCCCCHHHHHHHHHHcCCCEeeEE--EC-CEEEEEEEHHHhc
Confidence 3568999987 78999999999999999999999999999 45 9999999999985
No 71
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.48 E-value=5.4e-07 Score=59.27 Aligned_cols=48 Identities=13% Similarity=0.244 Sum_probs=43.2
Q ss_pred CcEEecCCCCHHHHHHHHHHcCCCEEEEEecCC-CCceEEEEeHHHHHHHH
Q 032497 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGE-QKSVAGIITERDYLRKI 119 (139)
Q Consensus 70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~-~~~lvGivt~~dll~~~ 119 (139)
.+.++++++++.+|.+.|.+++++++||+ |+ +++++|++|..|+.+.+
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv--d~~~~~~~Givt~~Dl~~~~ 50 (98)
T cd04618 2 KLVVFDTKLPVKKAFNALVENGIRSAPLW--DSRKQQFVGMLTITDFILIL 50 (98)
T ss_pred eEEEECCCCcHHHHHHHHHHcCCceEEEE--eCCCCEEEEEEEHHHHhhhe
Confidence 47899999999999999999999999999 55 48999999999997754
No 72
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.48 E-value=6.3e-07 Score=58.94 Aligned_cols=55 Identities=31% Similarity=0.430 Sum_probs=49.7
Q ss_pred cCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHH
Q 032497 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (139)
Q Consensus 53 ~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~ 117 (139)
..++.++|.+ ++.++.+++++.++++.|.+.+...+||+ ++ ++++|+||..|+++
T Consensus 58 ~~~~~~~~~~-------~~~~v~~~~~~~~~l~~~~~~~~~~~~Vv--~~-~~~~Gvit~~di~~ 112 (113)
T cd04623 58 DTPVSEIMTR-------NVITVTPDDTVDEAMALMTERRFRHLPVV--DG-GKLVGIVSIGDVVK 112 (113)
T ss_pred ccCHHHhcCC-------CcEEECCCCcHHHHHHHHHHcCCCEeEEE--eC-CEEEEEEEHHHhhc
Confidence 4579999987 78999999999999999999999999999 44 89999999999864
No 73
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=98.47 E-value=7.4e-07 Score=58.42 Aligned_cols=56 Identities=21% Similarity=0.424 Sum_probs=48.9
Q ss_pred cCcHHHHhhhcCCCCCCCcEEecC-CCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHH
Q 032497 53 STTISDILKAKGKGADGSWLWCTT-DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (139)
Q Consensus 53 ~~~v~dvm~~~~~~~~~~~~~v~~-~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~ 117 (139)
..++.++|.. .+..+.+ ++++.++++.|.+++.+.+||+ +++++++|+||.+|+++
T Consensus 53 ~~~v~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv--~~~~~~~Gvi~~~dil~ 109 (110)
T cd04601 53 DKPVSEVMTP-------ENLLTTVEGTSLEEALELLHEHKIEKLPVV--DDEGKLKGLITVKDIEK 109 (110)
T ss_pred CCCHHHhccc-------CceEEecCCCCHHHHHHHHHHhCCCeeeEE--cCCCCEEEEEEhhhhhc
Confidence 4579999977 5666666 9999999999999999999999 67789999999999864
No 74
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.47 E-value=1.1e-06 Score=58.19 Aligned_cols=65 Identities=23% Similarity=0.455 Sum_probs=52.6
Q ss_pred CcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCCCCccCccccccccC
Q 032497 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEE 138 (139)
Q Consensus 70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~~~~~~~v~~im~~~ 138 (139)
.+.++.+++++.++++.|.+.+.+.++|+ +++++++|++|.+|+++.+. .+.. ...++.++|.++
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~--d~~~~~~G~v~~~dl~~~~~-~~~~-~~~~v~~~~~~~ 67 (113)
T cd04607 3 KQLLVSPDASILDALRKIDKNALRIVLVV--DENGRLLGTVTDGDIRRALL-KGLS-LDDPVSEVMNRN 67 (113)
T ss_pred cceEECCCCCHHHHHHHHHhcCcCEEEEE--CCCCCEEEEEEcHHHHHHHh-cCCC-cCCCHHHhhcCC
Confidence 46889999999999999999999999999 67899999999999987654 3332 245677777643
No 75
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=98.47 E-value=4.5e-07 Score=59.77 Aligned_cols=55 Identities=25% Similarity=0.381 Sum_probs=50.5
Q ss_pred CcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCC-CCceEEEEeHHHHHH
Q 032497 54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGE-QKSVAGIITERDYLR 117 (139)
Q Consensus 54 ~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~-~~~lvGivt~~dll~ 117 (139)
.++.++|.+ ++.++.+++++.++++.|...+.+.+||+ ++ .++++|++|..|++.
T Consensus 58 ~~v~~~~~~-------~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv--~~~~~~~~Gvvt~~di~~ 113 (114)
T cd04613 58 VVASDIMTK-------PPVVVYPEDSLEDALKKFEDSDYEQLPVV--DDDPGKLLGILSRSDLLS 113 (114)
T ss_pred EEHHHhccC-------CCcEEcCCCCHHHHHHHHhhCCccEeeEE--eCCCCEEEEEEEhHHhhc
Confidence 689999998 79999999999999999999999999999 55 789999999999864
No 76
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=98.47 E-value=3.7e-07 Score=71.79 Aligned_cols=79 Identities=11% Similarity=0.287 Sum_probs=62.3
Q ss_pred CCccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCC-CceEEEEeHHHHHHHHHHcCCCCcc
Q 032497 50 GFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQ-KSVAGIITERDYLRKIIVQGRSSKS 128 (139)
Q Consensus 50 ~~~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~-~~lvGivt~~dll~~~~~~~~~~~~ 128 (139)
.+...+|+++|++.. ++.++++++++.++++.+.+++++.+||+ +++ ++++|+|+.+|++.... .+.. .
T Consensus 63 ~l~~~~V~diMtpr~-----~i~~l~~~~sl~e~~~~i~~~~~sr~PV~--~~~~d~iiGiv~~kDll~~~~-~~~~--~ 132 (292)
T PRK15094 63 DIADQRVRDIMIPRS-----QMITLKRNQTLDECLDVIIESAHSRFPVI--SEDKDHIEGILMAKDLLPFMR-SDAE--A 132 (292)
T ss_pred ccCCCEEeEEccchH-----HEEEEeCCCCHHHHHHHHHhcCCcEEEEe--cCCCCcEEEEEEHHHHHhHhh-ccCC--c
Confidence 456789999999843 48999999999999999999999999999 444 79999999999986542 2211 2
Q ss_pred CccccccccC
Q 032497 129 TKVGDIMTEE 138 (139)
Q Consensus 129 ~~v~~im~~~ 138 (139)
..+.++|.++
T Consensus 133 ~~l~~l~r~~ 142 (292)
T PRK15094 133 FSMDKVLRQA 142 (292)
T ss_pred CCHHHHcCCC
Confidence 3467777654
No 77
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=98.47 E-value=6.5e-07 Score=75.22 Aligned_cols=60 Identities=15% Similarity=0.248 Sum_probs=53.4
Q ss_pred ccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHH
Q 032497 52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRK 118 (139)
Q Consensus 52 ~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~ 118 (139)
...++.++|++.. ++.++++++++.+|+++|.++++..+||+ |++++++|+||.+|+++.
T Consensus 159 ~~~~V~dIMt~~~-----~~itv~~d~~l~eAl~lM~e~~i~~LPVV--D~~g~LvGIIT~~Dilk~ 218 (502)
T PRK07107 159 LDTKVKDFMTPFE-----KLVTANEGTTLKEANDIIWDHKLNTLPIV--DKNGNLVYLVFRKDYDSH 218 (502)
T ss_pred CCCCHHHHhCCCC-----CeEEECCCCcHHHHHHHHHHcCCCEEEEE--cCCCeEEEEEEhHHHHhc
Confidence 4568999999622 57889999999999999999999999999 778899999999999875
No 78
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=98.47 E-value=9.2e-07 Score=58.16 Aligned_cols=55 Identities=35% Similarity=0.640 Sum_probs=50.1
Q ss_pred CcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHH
Q 032497 54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (139)
Q Consensus 54 ~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~ 117 (139)
.++.++|.. ++.++.+++++.++++.|.+.+...+||+ +++++++|++|..|+++
T Consensus 55 ~~v~~~~~~-------~~~~v~~~~~~~~~~~~~~~~~~~~~~V~--~~~~~~~G~i~~~dl~~ 109 (110)
T cd04588 55 AKVKDVMTK-------DVITIDEDEQLYDAIRLMNKHNVGRLIVT--DDEGRPVGIITRTDILR 109 (110)
T ss_pred cCHHHHhcC-------CceEECCCCCHHHHHHHHHhcCCCEEEEE--CCCCCEEEEEEhHHhhc
Confidence 579999987 78999999999999999999999999999 66789999999999864
No 79
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=98.47 E-value=7.6e-07 Score=73.77 Aligned_cols=61 Identities=18% Similarity=0.231 Sum_probs=55.6
Q ss_pred ccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHH
Q 032497 52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIV 121 (139)
Q Consensus 52 ~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~ 121 (139)
...+++++|.+ ++.++++++++.+|++.|.+++...+||+ |++|+++|+||.+|+++.+..
T Consensus 193 ~~~~v~~im~~-------~~~~v~~~~~~~eal~~m~~~~~~~lpVV--D~~g~lvGiIt~~Dil~~l~~ 253 (449)
T TIGR00400 193 PEEILSSIMRS-------SVFSIVGVNDQEEVARLIQKYDFLAVPVV--DNEGRLVGIVTVDDIIDVIQS 253 (449)
T ss_pred CCCcHHHHhCC-------CCeeECCCCCHHHHHHHHHHcCCCEEeEE--cCCCeEEEEEEHHHHHHHHHh
Confidence 34679999998 78999999999999999999999999999 788999999999999987754
No 80
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.46 E-value=3.5e-07 Score=62.20 Aligned_cols=56 Identities=21% Similarity=0.322 Sum_probs=46.6
Q ss_pred cCcHHHHhhhcCCCCCCCcEE--e----cCCCCHHHHHHHHHHcCCCEEEEEecCCC-CceEEEEeHHHHHH
Q 032497 53 STTISDILKAKGKGADGSWLW--C----TTDDTVYDAVKSMTQHNVGALVVVKPGEQ-KSVAGIITERDYLR 117 (139)
Q Consensus 53 ~~~v~dvm~~~~~~~~~~~~~--v----~~~~tl~~a~~~m~~~~~~~lpVv~~d~~-~~lvGivt~~dll~ 117 (139)
..++.++|.+ ++.. + .+++++.++++.|.+++.+.+||+ |++ ++++|+||.+|+++
T Consensus 63 ~~~v~~im~~-------~~~~~~~~~~~~~~~~l~~~l~~m~~~~~~~lpVv--d~~~~~~~G~it~~di~~ 125 (126)
T cd04640 63 ELTVADVMTP-------KEDLKALDLEELENASVGDVVETLKASGRQHALVV--DREHHQIRGIISTSDIAR 125 (126)
T ss_pred heEHHHhcCc-------hhhhccccHHHhccCcHHHHHHHHHHCCCceEEEE--ECCCCEEEEEEeHHHHhh
Confidence 4679999987 4433 3 368999999999999999999999 555 79999999999864
No 81
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.46 E-value=1.3e-06 Score=57.36 Aligned_cols=48 Identities=27% Similarity=0.405 Sum_probs=44.2
Q ss_pred CcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHH
Q 032497 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKI 119 (139)
Q Consensus 70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~ 119 (139)
++.++.+++++.++++.|.+++.+.+||+ |++|+++|++|.+|+++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~--d~~~~~~G~v~~~~l~~~~ 50 (110)
T cd04605 3 PVVTISEDASIKEAAKLMIEENINHLPVV--DEDGRLVGIVTSWDISKAV 50 (110)
T ss_pred CCEEECCCCCHHHHHHHHHhCCCceEEEE--CCCCcEEEEEeHHHHHHHH
Confidence 67889999999999999999999999999 6789999999999998755
No 82
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.46 E-value=6.6e-07 Score=59.05 Aligned_cols=55 Identities=33% Similarity=0.486 Sum_probs=49.9
Q ss_pred CcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHH
Q 032497 54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (139)
Q Consensus 54 ~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~ 117 (139)
.++.++|.. .+.++.+++++.++++.|...+.+.+||+ +++++++|++|..|+++
T Consensus 58 ~~~~~~~~~-------~~~~v~~~~~~~~~~~~~~~~~~~~~~V~--~~~~~~~G~it~~di~~ 112 (113)
T cd04622 58 TTVGDVMTR-------GVVTVTEDDDVDEAARLMREHQVRRLPVV--DDDGRLVGIVSLGDLAR 112 (113)
T ss_pred CCHHHhccC-------CccEECCCCCHHHHHHHHHHcCCCeeeEE--CCCCcEEEEEEHHHhhc
Confidence 359999988 78999999999999999999999999999 66799999999999864
No 83
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.45 E-value=9.8e-07 Score=59.84 Aligned_cols=48 Identities=25% Similarity=0.439 Sum_probs=43.8
Q ss_pred CcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHH
Q 032497 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKI 119 (139)
Q Consensus 70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~ 119 (139)
++..+.+++++.+|++.|.+.+.+.+||+ |++++++|++|.+|+.+.+
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv--~~~~~~~G~it~~dl~~~~ 49 (128)
T cd04632 2 DVITVREDDSVGKAINVLREHGISRLPVV--DDNGKLTGIVTRHDIVDFV 49 (128)
T ss_pred CceEeCCCCCHHHHHHHHHHcCCCEEEEE--CCCCcEEEEEEHHHHHHHH
Confidence 57889999999999999999999999999 6789999999999998654
No 84
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=98.45 E-value=1.6e-06 Score=57.21 Aligned_cols=64 Identities=30% Similarity=0.383 Sum_probs=51.0
Q ss_pred CcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCCCCccCcccccccc
Q 032497 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTE 137 (139)
Q Consensus 70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~~~~~~~v~~im~~ 137 (139)
++.++.+++++.++++.|.+++.+.++|+ |+ ++++|+++..|+++... .+....+.++.++|.+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~--d~-~~~~G~v~~~~l~~~~~-~~~~~~~~~i~~~~~~ 65 (111)
T cd04589 2 PPLIVDASTSIRDAARLMREHGADALLVR--DG-DPRLGIVTRTDLLDAVL-LDGLPSSTPVGEIATF 65 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEe--cC-CeEEEEEEHHHHHHHHH-cCCCCCCCCHHHHhCC
Confidence 57889999999999999999999999999 56 89999999999987653 2222235567777764
No 85
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.45 E-value=5.9e-07 Score=59.55 Aligned_cols=54 Identities=20% Similarity=0.322 Sum_probs=47.6
Q ss_pred cCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHH
Q 032497 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (139)
Q Consensus 53 ~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~ 117 (139)
..++.++|.+ ++.++.+++++.+|++.|.+.+ .+||+ +++++++|++|..|+++
T Consensus 62 ~~~v~~~~~~-------~~~~v~~~~~l~~a~~~~~~~~--~~~Vv--~~~~~~~Gvit~~dil~ 115 (116)
T cd04643 62 DLKVIDVMNT-------DVPVIIDDADIEEILHLLIDQP--FLPVV--DDDGIFIGIITRREILK 115 (116)
T ss_pred CCcHHHHhcC-------CCceecCCCCHHHHHHHHhcCC--ceeEE--eCCCeEEEEEEHHHhhc
Confidence 4579999998 7899999999999999998865 58999 67899999999999864
No 86
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.45 E-value=1.1e-06 Score=58.95 Aligned_cols=49 Identities=31% Similarity=0.449 Sum_probs=44.6
Q ss_pred CcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHH
Q 032497 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII 120 (139)
Q Consensus 70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~ 120 (139)
++.++.+++++.++.+.|.+++++++||+ +++|+++|+++..|+++.+.
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~--~~~~~~~Giv~~~~l~~~~~ 51 (124)
T cd04600 3 DVVTVTPDTSLEEAWALLRRHRIKALPVV--DGDRRLVGIVTQRDLLRHAR 51 (124)
T ss_pred CcEEeCCCCCHHHHHHHHHHcCCceeeEE--CCCCCEEEEEEHHHHHhhhc
Confidence 68899999999999999999999999999 66799999999999987653
No 87
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=98.44 E-value=8.4e-07 Score=74.97 Aligned_cols=59 Identities=22% Similarity=0.301 Sum_probs=54.7
Q ss_pred CcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHH
Q 032497 54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIV 121 (139)
Q Consensus 54 ~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~ 121 (139)
.+|+|+|.+ ++.++++++++.+|++.|.+++++.+||+ |++|+++|+||..|+.+.+..
T Consensus 68 ~~V~dim~~-------~~~~v~~~~~l~~a~~~m~~~~~~~lpVv--d~~g~l~Givt~~di~~~~~~ 126 (546)
T PRK14869 68 PQVRDLEID-------KPVTVSPDTSLKEAWNLMDENNVKTLPVV--DEEGKLLGLVSLSDLARAYMD 126 (546)
T ss_pred CcHHHhcCC-------CCcEECCCCcHHHHHHHHHHcCCCEEEEE--cCCCEEEEEEEHHHHHHHHHh
Confidence 689999998 89999999999999999999999999999 778999999999999887653
No 88
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.44 E-value=8.2e-07 Score=58.59 Aligned_cols=55 Identities=22% Similarity=0.495 Sum_probs=49.4
Q ss_pred cCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHH
Q 032497 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (139)
Q Consensus 53 ~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~ 117 (139)
..++.++|.+ ++.++.+++++.+|++.|.+++...+||+ ++ ++++|+||..|++.
T Consensus 56 ~~~v~~~~~~-------~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv--~~-~~~~G~it~~di~~ 110 (111)
T cd04626 56 EKKVFNIVSQ-------DVFYVNEEDTIDEALDIMREKQIGRLPVV--DD-NKLIGVVRTKDILD 110 (111)
T ss_pred cCcHHHHhcC-------CcEEEcCCCcHHHHHHHHHHcCCCeeeEe--EC-CEEEEEEEhHHhcc
Confidence 3579999987 78999999999999999999999999999 45 89999999999853
No 89
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=98.44 E-value=1.7e-06 Score=56.62 Aligned_cols=48 Identities=25% Similarity=0.347 Sum_probs=43.5
Q ss_pred CcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHH
Q 032497 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKI 119 (139)
Q Consensus 70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~ 119 (139)
++.++.+++++.++++.|.+++..++||+ +++++++|+++..|+++..
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~--d~~~~~~G~v~~~dl~~~~ 50 (109)
T cd04583 3 NPVTITPDRTLAEAIKLMRDKKVDSLLVV--DKDNKLLGIVSLESLEQAY 50 (109)
T ss_pred CCEEECCCCCHHHHHHHHHHCCCceEEEE--cCCCcEEEEEEHHHHHHHh
Confidence 68889999999999999999999999999 6779999999999997643
No 90
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.43 E-value=1.5e-06 Score=57.28 Aligned_cols=56 Identities=29% Similarity=0.471 Sum_probs=50.4
Q ss_pred cCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHH
Q 032497 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (139)
Q Consensus 53 ~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~ 117 (139)
..++.++|.+ ++.++.+++++.++++.|.+++...+||+ +++|+++|++|..|+++
T Consensus 56 ~~~v~~~~~~-------~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv--~~~g~~~Gilt~~dl~~ 111 (112)
T cd04624 56 DTPVSEIMTR-------DLVTVDPDEPVAEAAKLMRKNNIRHHLVV--DKGGELVGVISIRDLVR 111 (112)
T ss_pred ccCHHHhccC-------CCEEECCCCcHHHHHHHHHHcCccEEEEE--cCCCcEEEEEEHHHhcc
Confidence 4578999988 78999999999999999999999999999 67799999999999863
No 91
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.43 E-value=6.7e-07 Score=58.40 Aligned_cols=56 Identities=16% Similarity=0.367 Sum_probs=48.5
Q ss_pred CcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHH
Q 032497 54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (139)
Q Consensus 54 ~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~ 117 (139)
.+..+++... .+.++.+++++.+|++.|.+++.+.+||+ +++++++|++|.+|+++
T Consensus 40 v~~~dl~~~~------~~~~v~~~~~l~~a~~~m~~~~~~~lpVv--~~~~~~~Giit~~di~~ 95 (96)
T cd04614 40 ITERDLIAKS------EVVTATKRTTVSECAQKMKRNRIEQIPII--NGNDKLIGLLRDHDLLK 95 (96)
T ss_pred EEHHHHhcCC------CcEEecCCCCHHHHHHHHHHhCCCeeeEE--CCCCcEEEEEEHHHhhc
Confidence 4677776542 47899999999999999999999999999 66789999999999864
No 92
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.43 E-value=1.3e-06 Score=57.47 Aligned_cols=55 Identities=33% Similarity=0.513 Sum_probs=49.6
Q ss_pred CcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHH
Q 032497 54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (139)
Q Consensus 54 ~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~ 117 (139)
.++.++|.. ++.++.+++++.+|++.|.+++...+||+ +++|+++|++|..|+++
T Consensus 55 ~~~~~~~~~-------~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv--~~~~~~~G~v~~~di~~ 109 (110)
T cd04605 55 KSVEDIMTR-------NVITATPDEPIDVAARKMERHNISALPVV--DAENRVIGIITSEDISK 109 (110)
T ss_pred cCHHHhcCC-------CCeEECCCCcHHHHHHHHHHhCCCEEeEE--CCCCcEEEEEEHHHhhh
Confidence 358899977 78999999999999999999999999999 67899999999999853
No 93
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=98.43 E-value=5.3e-07 Score=75.34 Aligned_cols=70 Identities=30% Similarity=0.386 Sum_probs=59.2
Q ss_pred cCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCCCCccCccc
Q 032497 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVG 132 (139)
Q Consensus 53 ~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~~~~~~~v~ 132 (139)
..++.++|.+ ++.++.+++++.+|++.|.+++++++||+ |++++++|+||.+|+... . ...++.
T Consensus 88 ~VKv~~iMi~-------~pvtv~~d~tv~eA~~~m~~~~~s~l~VV--D~~gklvGIVT~rDL~~~------~-~~~~V~ 151 (479)
T PRK07807 88 WVKSRDLVFD-------TPVTLSPDDTVGDALALLPKRAHGAVVVV--DEEGRPVGVVTEADCAGV------D-RFTQVR 151 (479)
T ss_pred hccccccccc-------CCeEECCCCCHHHHHHHHHhcCCceEEEE--CCCCeEEEEEeHHHHhcC------c-cCCCHH
Confidence 4667888888 89999999999999999999999999999 788999999999998421 1 245688
Q ss_pred cccccC
Q 032497 133 DIMTEE 138 (139)
Q Consensus 133 ~im~~~ 138 (139)
++|+++
T Consensus 152 diMt~~ 157 (479)
T PRK07807 152 DVMSTD 157 (479)
T ss_pred HhccCC
Confidence 888764
No 94
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.43 E-value=8.1e-07 Score=60.74 Aligned_cols=54 Identities=26% Similarity=0.468 Sum_probs=49.3
Q ss_pred CcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHH
Q 032497 54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (139)
Q Consensus 54 ~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~ 117 (139)
.++.++|.+ ++..+.+++++.++++.|.+.+.+.+||+ ++ ++++|++|..|+++
T Consensus 78 ~~v~~~~~~-------~~~~v~~~~~l~~~~~~~~~~~~~~~~V~--~~-~~~iGvit~~dl~~ 131 (132)
T cd04636 78 KKVEEIMTK-------KVITVDEDTTIEDVARIMSKKNIKRLPVV--DD-GKLVGIISRGDIIR 131 (132)
T ss_pred CCHHHhccC-------CceEECCCCcHHHHHHHHHHCCCCeeEEE--EC-CEEEEEEEHHHhhc
Confidence 379999988 78999999999999999999999999999 55 99999999999864
No 95
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.43 E-value=7.1e-07 Score=59.69 Aligned_cols=55 Identities=33% Similarity=0.512 Sum_probs=50.0
Q ss_pred cCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHH
Q 032497 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (139)
Q Consensus 53 ~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~ 117 (139)
..++.++|.. ++.++.+++++.++++.|.+.+.+.+||+ ++ ++++|++|..|+++
T Consensus 66 ~~~~~~~~~~-------~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv--~~-~~~~Gvi~~~dl~~ 120 (121)
T cd04633 66 NLPVSDIMTR-------PVITIEPDTSVSDVASLMLENNIGGLPVV--DD-GKLVGIVTRTDILR 120 (121)
T ss_pred ccCHHHHccC-------CceEECCCCcHHHHHHHHHHcCCCcccEE--EC-CEEEEEEEHHHhhc
Confidence 4579999987 78999999999999999999999999999 55 89999999999864
No 96
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=98.42 E-value=9.4e-07 Score=73.87 Aligned_cols=57 Identities=18% Similarity=0.256 Sum_probs=53.2
Q ss_pred CcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHH
Q 032497 54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKI 119 (139)
Q Consensus 54 ~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~ 119 (139)
.++.++|++ ++.++++++++.+|++.|.+++...+||+ |++++++|+||.+||++..
T Consensus 148 ~~V~diMt~-------~~itV~~d~sL~eAl~lM~~~~i~~LPVV--D~~g~lvGIIT~~DIl~~~ 204 (479)
T PRK07807 148 TQVRDVMST-------DLVTLPAGTDPREAFDLLEAARVKLAPVV--DADGRLVGVLTRTGALRAT 204 (479)
T ss_pred CCHHHhccC-------CceEECCCCcHHHHHHHHHhcCCCEEEEE--cCCCeEEEEEEHHHHHHHh
Confidence 569999998 89999999999999999999999999999 6788999999999998864
No 97
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=98.42 E-value=1.4e-06 Score=57.22 Aligned_cols=55 Identities=29% Similarity=0.546 Sum_probs=50.1
Q ss_pred CcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHH
Q 032497 54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (139)
Q Consensus 54 ~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~ 117 (139)
.++.++|.+ ++.++.+++++.++++.|.+++.+.+||+ +++++++|++|..|+++
T Consensus 56 ~~~~~~~~~-------~~~~v~~~~~~~~~~~~~~~~~~~~~~V~--~~~~~~~G~it~~di~~ 110 (111)
T cd04612 56 VLVGDVMTR-------DPVTASPDETLRDALKRMAERDIGRLPVV--DDSGRLVGIVSRSDLLR 110 (111)
T ss_pred cCHHHhccC-------CCeEECCCCCHHHHHHHHHhCCCCeeeEE--cCCCCEEEEEEHHHhhh
Confidence 368899988 89999999999999999999999999999 66799999999999864
No 98
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.42 E-value=1.4e-06 Score=57.42 Aligned_cols=65 Identities=18% Similarity=0.280 Sum_probs=51.2
Q ss_pred CcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCCCCccCccccccccC
Q 032497 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEE 138 (139)
Q Consensus 70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~~~~~~~v~~im~~~ 138 (139)
++.++++++++.++++.|.+++.+.+||+ |++++++|+++.+|+++... .+.. .+.++.++|.++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~--d~~~~~~G~v~~~dl~~~~~-~~~~-~~~~v~~~~~~~ 66 (111)
T cd04626 2 DFPTIDEDASIREALHEMLKYNTNEIIVK--DNEEKLKGVVTFTDILDLDL-FESF-LEKKVFNIVSQD 66 (111)
T ss_pred CceEECCCccHHHHHHHHHHhCCCeEEEE--cCCCCEEEEEehHHhHHHHh-hccc-ccCcHHHHhcCC
Confidence 57889999999999999999999999999 67899999999999976542 2211 234566776543
No 99
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.42 E-value=1.2e-06 Score=57.86 Aligned_cols=55 Identities=20% Similarity=0.427 Sum_probs=49.1
Q ss_pred cCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHH
Q 032497 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (139)
Q Consensus 53 ~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~ 117 (139)
..++.++|.+ ++..+.+++++.++++.|.+++.+.+||+ +++ +++|+||..|+++
T Consensus 57 ~~~~~~~~~~-------~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv--~~~-~~~Gvi~~~di~~ 111 (112)
T cd04802 57 EVPVGEVMST-------PLITIDPNASLNEAAKLMAKHGIKRLPVV--DDD-ELVGIVTTTDIVM 111 (112)
T ss_pred cCCHHHhcCC-------CcEEECCCCCHHHHHHHHHHcCCCeeEEe--eCC-EEEEEEEhhhhhc
Confidence 4579999987 78999999999999999999999999999 444 9999999999864
No 100
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.42 E-value=1.2e-06 Score=59.95 Aligned_cols=49 Identities=31% Similarity=0.477 Sum_probs=44.7
Q ss_pred CcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHH
Q 032497 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII 120 (139)
Q Consensus 70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~ 120 (139)
++.++.+++++.++++.|.+.+.+++||+ |++++++|+++..|+++.+.
T Consensus 2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~--d~~~~~~G~i~~~~l~~~~~ 50 (132)
T cd04636 2 DVITVKKDDTLRDVVEILLTGKISGVPVV--DNEGRVVGIVSEGDLIRKIY 50 (132)
T ss_pred CCeEeCCCCcHHHHHHHHHHhCCCccceE--CCCCCEEEEEeHHHHHHHHh
Confidence 68899999999999999999999999999 67899999999999987653
No 101
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=98.42 E-value=2.1e-07 Score=63.57 Aligned_cols=58 Identities=21% Similarity=0.232 Sum_probs=49.1
Q ss_pred ccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHH---------HcCCCEEEEEecCCCCceEEEEeHHHHHHH
Q 032497 52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMT---------QHNVGALVVVKPGEQKSVAGIITERDYLRK 118 (139)
Q Consensus 52 ~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~---------~~~~~~lpVv~~d~~~~lvGivt~~dll~~ 118 (139)
...++.++|++ ++.++.+++++.++.+++. +.+..++||+ +++|+++||||.+|++++
T Consensus 57 ~~~~v~~im~~-------~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~--~~~~~~~Givt~~Dl~~~ 123 (124)
T cd04608 57 PSDPVSKALYK-------QFKRVNKNDTLGKLSRILETDAFLLVFFEQISSAAIGK--EKQEKPIGIVTKIDLLSY 123 (124)
T ss_pred CCCcHHHHhhc-------cceecCCCCCHHHHHhhcccCCceEEEecccccccccc--ccccceEEEEehhHhhhh
Confidence 45789999998 8999999999999999653 3357778888 677999999999999864
No 102
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.41 E-value=1.2e-06 Score=57.20 Aligned_cols=47 Identities=34% Similarity=0.377 Sum_probs=43.3
Q ss_pred CcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHH
Q 032497 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRK 118 (139)
Q Consensus 70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~ 118 (139)
++.++.+++++.+|++.|.+++++.+||+ |++++++|+++..|+.+.
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~--d~~~~~~Giv~~~dl~~~ 48 (96)
T cd04614 2 NVPTVWEETPLPVAVRIMELANVKALPVL--DDDGKLSGIITERDLIAK 48 (96)
T ss_pred CccEeCCCCcHHHHHHHHHHcCCCeEEEE--CCCCCEEEEEEHHHHhcC
Confidence 68899999999999999999999999999 778999999999998753
No 103
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=98.41 E-value=1e-06 Score=58.08 Aligned_cols=55 Identities=27% Similarity=0.440 Sum_probs=49.6
Q ss_pred cCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHH
Q 032497 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (139)
Q Consensus 53 ~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~ 117 (139)
..++.++|.. ++..+++++++.++++.|.+++...+||+ + +++++|++|..|+++
T Consensus 56 ~~~i~~~~~~-------~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv--~-~~~~~G~it~~dl~~ 110 (111)
T cd04589 56 STPVGEIATF-------PLITVDPDDFLFNALLLMTRHRIHRVVVR--E-GGEVVGVLEQTDLLS 110 (111)
T ss_pred CCCHHHHhCC-------CcEEECCCCcHHHHHHHHHHhCccEEEEe--e-CCEEEEEEEhHHhhc
Confidence 4579999987 78999999999999999999999999999 4 489999999999864
No 104
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=98.41 E-value=1.1e-06 Score=73.50 Aligned_cols=57 Identities=21% Similarity=0.289 Sum_probs=53.3
Q ss_pred CcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHH
Q 032497 54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKI 119 (139)
Q Consensus 54 ~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~ 119 (139)
.++.++|++ ++.++++++++.+|+++|.+++...+||+ |++++++|+||.+||++..
T Consensus 146 ~~V~dIMt~-------~litv~~~~sL~eAl~lM~~~~i~~LPVV--D~~g~LvGIIT~~DLl~~~ 202 (475)
T TIGR01303 146 TQVRDIMST-------DLVTAPADTEPRKAFDLLEHAPRDVAPLV--DADGTLAGILTRTGALRAT 202 (475)
T ss_pred CCHHHHccC-------CceEeCCCCcHHHHHHHHHHcCCCEEEEE--cCCCeEEEEEEHHHHHHHH
Confidence 579999998 89999999999999999999999999999 7789999999999998864
No 105
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.41 E-value=1.6e-06 Score=57.12 Aligned_cols=63 Identities=21% Similarity=0.341 Sum_probs=51.2
Q ss_pred CcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCCCCccCcccccccc
Q 032497 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTE 137 (139)
Q Consensus 70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~~~~~~~v~~im~~ 137 (139)
++.++.+++++.++++.|.+.+.+.+||+ +++++++|+++..|+.+.+. .+. ...++.++|..
T Consensus 2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~--~~~~~~~G~v~~~~l~~~~~-~~~--~~~~v~~~~~~ 64 (111)
T cd04639 2 HFETLSPADTLDDAADALLATTQHEFPVV--DGDGHLVGLLTRDDLIRALA-EGG--PDAPVRGVMRR 64 (111)
T ss_pred CceEcCCCCcHHHHHHHHHHcCCCcceEE--CCCCcEEEEeeHHHHHHHHH-hcC--CCCcHHHHhcC
Confidence 57889999999999999998999999999 67799999999999987654 222 23467777654
No 106
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.41 E-value=8.8e-07 Score=60.10 Aligned_cols=46 Identities=24% Similarity=0.407 Sum_probs=42.8
Q ss_pred CcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHH
Q 032497 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (139)
Q Consensus 70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~ 117 (139)
++.++++++++.+|++.|.+++.+.+||+ |++++++|+||..|+++
T Consensus 80 ~~~~v~~~~~l~~a~~~~~~~~~~~l~Vv--d~~~~~~Giit~~dil~ 125 (126)
T cd04642 80 PLITCTPSSTLKEVITKLVANKVHRVWVV--DEEGKPIGVITLTDIIS 125 (126)
T ss_pred CCeEECCCCcHHHHHHHHHHhCCcEEEEE--CCCCCEEEEEEHHHHhc
Confidence 68999999999999999999999999999 67799999999999864
No 107
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=98.41 E-value=1.8e-06 Score=56.81 Aligned_cols=64 Identities=33% Similarity=0.610 Sum_probs=50.5
Q ss_pred CcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCCCCccCcccccccc
Q 032497 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTE 137 (139)
Q Consensus 70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~~~~~~~v~~im~~ 137 (139)
++.++++++++.++.+.|.+++.+.+||+ |+ ++++|+++..|+++.+...+.. ...++.++|..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~--~~-~~~~G~v~~~~l~~~~~~~~~~-~~~~i~~~~~~ 65 (111)
T cd04800 2 PPVTCSPDTTIREAARLMTEHRVSSLLVV--DD-GRLVGIVTDRDLRNRVVAEGLD-PDTPVSEVMTA 65 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEE--EC-CEEEEEEEhHHHHHHHhccCCC-ccCCHHHHhCC
Confidence 57889999999999999999999999999 45 9999999999998755433322 23556676644
No 108
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=98.40 E-value=1.7e-06 Score=56.49 Aligned_cols=47 Identities=28% Similarity=0.354 Sum_probs=42.9
Q ss_pred CcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHH
Q 032497 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRK 118 (139)
Q Consensus 70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~ 118 (139)
++.++++++++.+|++.|.+++.+.+||+ |++|+++|++|..|+++.
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~~~v~--d~~g~~~Giv~~~dl~~~ 48 (106)
T cd04582 2 EPITVRPDDPLSDALGLMDDSDLRALTVV--DADGQPLGFVTRREAARA 48 (106)
T ss_pred CCcEecCCCcHHHHHHHHHhcCCCEEEEE--CCCCCEEEEEeHHHHHHh
Confidence 57889999999999999999999999999 678999999999999764
No 109
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.40 E-value=1.4e-06 Score=58.39 Aligned_cols=55 Identities=27% Similarity=0.380 Sum_probs=50.2
Q ss_pred CcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHH
Q 032497 54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (139)
Q Consensus 54 ~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~ 117 (139)
.++.++|.. ++.++.+++++.++++.|.+++...+||+ +++++++|++|..|+++
T Consensus 67 ~~~~~~~~~-------~~~~v~~~~~l~~~~~~~~~~~~~~~~vv--~~~~~~~Gvit~~dll~ 121 (122)
T cd04637 67 RRAHQIMTR-------DPITVSPDTPVDEASKLLLENSISCLPVV--DENGQLIGIITWKDLLK 121 (122)
T ss_pred hHHHHhhcC-------CCeeeCCCCcHHHHHHHHHHcCCCeEeEE--CCCCCEEEEEEHHHhhh
Confidence 468899987 79999999999999999999999999999 67789999999999864
No 110
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=98.40 E-value=1.5e-06 Score=69.62 Aligned_cols=66 Identities=24% Similarity=0.322 Sum_probs=59.7
Q ss_pred CccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCCC
Q 032497 51 FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRS 125 (139)
Q Consensus 51 ~~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~~ 125 (139)
....++..+|++ +|.++.+.+|+..+.+.|...++.-+||+ +++.+++|+||++|+++++-..++.
T Consensus 246 ~~~t~ieKVMtk-------np~tv~~~tsVAsvaq~MiwE~iem~PVv--~~n~~llGiitR~dvlk~lq~~q~q 311 (432)
T COG4109 246 KPSTTIEKVMTK-------NPITVRAKTSVASVAQMMIWEGIEMLPVV--DSNNTLLGIITRQDVLKSLQMIQRQ 311 (432)
T ss_pred CCCccHHHHhcc-------CCeeecccchHHHHHHHHHhccceeeeEE--cCCceEEEEEEHHHHHHHHHHhccC
Confidence 346789999999 99999999999999999999999999999 7899999999999999988655443
No 111
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=98.40 E-value=8.8e-07 Score=73.41 Aligned_cols=74 Identities=19% Similarity=0.325 Sum_probs=60.7
Q ss_pred cCCccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHH-----cCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcC
Q 032497 49 HGFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQ-----HNVGALVVVKPGEQKSVAGIITERDYLRKIIVQG 123 (139)
Q Consensus 49 ~~~~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~-----~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~ 123 (139)
..+...+++++|++ ++.++++++|+.+|++.|.+ ++...++|+ |++++++|+|+.+|++.+
T Consensus 126 l~~~e~tvg~iMt~-------~~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vv--d~~~~l~GvV~l~dLl~a----- 191 (449)
T TIGR00400 126 LSYSDDSAGRIMTI-------EYVELKEDYTVGKALDYIRRVAKTKEDIYTLYVT--NESKHLKGVLSIRDLILA----- 191 (449)
T ss_pred hCCCcchHHHhCcC-------ceEEECCCCcHHHHHHHHHhcCCCccceeEEEEE--CCCCeEEEEEEHHHHhcC-----
Confidence 34567899999998 89999999999999999985 456788998 778999999999998642
Q ss_pred CCCccCccccccccC
Q 032497 124 RSSKSTKVGDIMTEE 138 (139)
Q Consensus 124 ~~~~~~~v~~im~~~ 138 (139)
. .+.+++++|+++
T Consensus 192 ~--~~~~v~~im~~~ 204 (449)
T TIGR00400 192 K--PEEILSSIMRSS 204 (449)
T ss_pred C--CCCcHHHHhCCC
Confidence 1 345788888764
No 112
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.39 E-value=1.4e-06 Score=57.80 Aligned_cols=62 Identities=21% Similarity=0.168 Sum_probs=49.6
Q ss_pred CcEEecCCCCHHHHHHHHHHcC-CCEEEEEecCCCCceEEEEeHHHHHHHHHHcCCCCccCccccccc
Q 032497 70 SWLWCTTDDTVYDAVKSMTQHN-VGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMT 136 (139)
Q Consensus 70 ~~~~v~~~~tl~~a~~~m~~~~-~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~~~~~~~v~~im~ 136 (139)
++.++++++++.+|++.|.+++ .+.+||+ |++++++|+++.+|+++... ... ...++.++|.
T Consensus 2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~--d~~~~~~G~v~~~dl~~~~~-~~~--~~~~v~~~~~ 64 (114)
T cd04801 2 DFPTVPAHLTLREFVREYVLGSNQRRFVVV--DNEGRYVGIISLADLRAIPT-SQW--AQTTVIQVMT 64 (114)
T ss_pred CcceeCCCCCHHHHHHHHhccCCceeEEEE--cCCCcEEEEEEHHHHHHHHH-hhc--cccchhhhhc
Confidence 5788999999999999998765 8899999 67899999999999987653 211 2456677775
No 113
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=98.39 E-value=1.2e-06 Score=57.63 Aligned_cols=54 Identities=24% Similarity=0.380 Sum_probs=47.0
Q ss_pred CcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHH
Q 032497 54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (139)
Q Consensus 54 ~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~ 117 (139)
..+.++|. ++.++.+++++.++++.|.+++.+.+||+ +++++++|++|..|+++
T Consensus 57 ~~~~~~~~--------~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv--~~~~~~~Gvit~~di~~ 110 (111)
T cd04590 57 LDLRDLLR--------PPLFVPESTPLDDLLEEMRKERSHMAIVV--DEYGGTAGLVTLEDILE 110 (111)
T ss_pred CCHHHHhc--------CCeecCCCCcHHHHHHHHHhcCCcEEEEE--ECCCCEEEEeEHHHhhc
Confidence 45666663 47889999999999999999999999999 67799999999999853
No 114
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.39 E-value=2.6e-06 Score=56.16 Aligned_cols=65 Identities=35% Similarity=0.638 Sum_probs=50.7
Q ss_pred CcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCCCCccCcccccccc
Q 032497 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTE 137 (139)
Q Consensus 70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~~~~~~~v~~im~~ 137 (139)
++.++++++++.++++.|.+++.+.+||+ |+ ++++|+++..|+++.+...+......++.++|.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~-~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~ 66 (112)
T cd04802 2 NVITVDPDTTVYEAANIMTENNIGRLIVV--DN-EKPVGIITERDLVKKVVSRNLKPREVPVGEVMST 66 (112)
T ss_pred CcEEECCCCCHHHHHHHHHHCCCCEEEEE--EC-CEEEEEEEHHHHHHHHhhccCCcccCCHHHhcCC
Confidence 57889999999999999999999999999 44 4999999999998866433222234567777754
No 115
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=98.39 E-value=9.1e-07 Score=58.06 Aligned_cols=54 Identities=19% Similarity=0.187 Sum_probs=48.4
Q ss_pred CcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHH
Q 032497 54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (139)
Q Consensus 54 ~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~ 117 (139)
.++.++|.+ .+.+++++.++.++++.|.+++...+||+ + +++++|++|..|+++
T Consensus 50 ~~~~~~~~~-------~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv--~-~~~~iGvit~~dl~~ 103 (104)
T cd04594 50 GDVVDYIVR-------GIPYVRLTSTAEEAWEVMMKNKTRWCPVV--D-DGKFKGIVTLDSILD 103 (104)
T ss_pred cchhhhhhc-------CCcEEcCCCCHHHHHHHHHHcCcceEEEE--E-CCEEEEEEEHHHhhc
Confidence 357888887 78999999999999999999999999999 4 589999999999864
No 116
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=98.39 E-value=1.8e-06 Score=47.70 Aligned_cols=46 Identities=28% Similarity=0.488 Sum_probs=41.6
Q ss_pred cEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHH
Q 032497 71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRK 118 (139)
Q Consensus 71 ~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~ 118 (139)
+.++.+++++.++++.|..++...+||+ +++++++|+++..++.+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~~~~g~i~~~~l~~~ 47 (49)
T smart00116 2 VVTVSPDTTLEEALELLREHGIRRLPVV--DEEGRLVGIVTRRDIIKA 47 (49)
T ss_pred ceEecCCCcHHHHHHHHHHhCCCcccEE--CCCCeEEEEEEHHHHHHh
Confidence 5778999999999999999999999999 667899999999999764
No 117
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=98.39 E-value=1.3e-06 Score=74.28 Aligned_cols=60 Identities=20% Similarity=0.240 Sum_probs=52.3
Q ss_pred CcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHH
Q 032497 54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII 120 (139)
Q Consensus 54 ~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~ 120 (139)
.++.|+|++ ++.++++++++.+|++.|.+++.+.+||++++++++++|+||++|+++.+.
T Consensus 512 ~~v~dim~~-------~~~~v~~d~~L~~al~~m~~~~~~~lpVVd~~~~~~liGvIt~~DIl~~l~ 571 (574)
T PRK01862 512 KTAADYAHT-------PFPLLTPDMPLGDALEHFMAFQGERLPVVESEASPTLAGVVYKTSLLDAYR 571 (574)
T ss_pred chHHHhccC-------CCeeECCCCCHHHHHHHHHhcCCCeeeeEeCCCCCeEEEEEEHHHHHHHHH
Confidence 579999988 789999999999999999999999999994222268999999999998763
No 118
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=98.37 E-value=1.6e-06 Score=57.85 Aligned_cols=56 Identities=34% Similarity=0.470 Sum_probs=50.3
Q ss_pred ccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHH
Q 032497 52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (139)
Q Consensus 52 ~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~ 117 (139)
...++.++|.. ++.++.+++++.++++.|.+++...+||+ ++ ++++|++|..|+++
T Consensus 65 ~~~~v~~~~~~-------~~~~i~~~~~l~~~~~~~~~~~~~~~~V~--~~-~~~~Gvv~~~di~~ 120 (121)
T cd04584 65 LKMPVKEIMTK-------DVITVHPLDTVEEAALLMREHRIGCLPVV--ED-GRLVGIITETDLLR 120 (121)
T ss_pred cCcCHHHHhhC-------CCeEECCCCcHHHHHHHHHHcCCCeEEEe--eC-CEEEEEEEHHHhhc
Confidence 34679999988 78999999999999999999999999999 44 89999999999864
No 119
>COG0517 FOG: CBS domain [General function prediction only]
Probab=98.37 E-value=1.3e-06 Score=57.85 Aligned_cols=52 Identities=23% Similarity=0.410 Sum_probs=48.2
Q ss_pred cHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHH-cCCCEEEEEecCCCC-ceEEEEeHHHH
Q 032497 55 TISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQ-HNVGALVVVKPGEQK-SVAGIITERDY 115 (139)
Q Consensus 55 ~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~-~~~~~lpVv~~d~~~-~lvGivt~~dl 115 (139)
++.++|+. ++.++.++.++.++.+.|.+ ++.+.+||+ ++++ +++|++|.+|+
T Consensus 63 ~v~~v~~~-------~~~~~~~~~~~~~~~~~m~~~~~~~~lpVv--~~~~~~lvGivt~~di 116 (117)
T COG0517 63 PVKEVMTK-------PVVTVDPDTPLEEALELMVERHKIRRLPVV--DDDGGKLVGIITLSDI 116 (117)
T ss_pred cHHHhccC-------CcEEECCCCCHHHHHHHHHHHcCcCeEEEE--ECCCCeEEEEEEHHHc
Confidence 69999998 78999999999999999999 799999999 5675 99999999997
No 120
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.37 E-value=2.8e-06 Score=55.97 Aligned_cols=66 Identities=27% Similarity=0.455 Sum_probs=50.3
Q ss_pred CcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCCCCccCccccccccC
Q 032497 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEE 138 (139)
Q Consensus 70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~~~~~~~v~~im~~~ 138 (139)
.+.++.+++++.++++.|.+++...++|. ++++++|+++.+|+++.+...+......++.++|..+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~---~~~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~~~~~~ 67 (112)
T cd04625 2 TIYTVAPETLLSEAVATMAEQDLGSLVVM---ERGELVGLLTFREVLQAMAQHGAGVLDTTVRAIMNPE 67 (112)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCeEEEe---eCCEEEEEEEHHHHHHHHHhcCCchhcCCHHHHhCCC
Confidence 57889999999999999988888788776 4589999999999987764322221245677777543
No 121
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.37 E-value=1.9e-06 Score=57.68 Aligned_cols=49 Identities=33% Similarity=0.512 Sum_probs=44.5
Q ss_pred CcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHH
Q 032497 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII 120 (139)
Q Consensus 70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~ 120 (139)
++.++.+++++.++.+.|.+.+++.+||+ +++|+++|+++..|+++.+.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~--~~~~~~~G~v~~~~l~~~~~ 50 (122)
T cd04803 2 PVVTLSEDDSLADAEELMREHRIRHLPVV--NEDGKLVGLLTQRDLLRAAL 50 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCcccccEE--CCCCCEEEEEEHHHHHHHhc
Confidence 57889999999999999999999999999 67799999999999987653
No 122
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=98.36 E-value=2e-06 Score=56.67 Aligned_cols=66 Identities=27% Similarity=0.422 Sum_probs=52.3
Q ss_pred CcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCCCCccCccccccccC
Q 032497 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEE 138 (139)
Q Consensus 70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~~~~~~~v~~im~~~ 138 (139)
++.++++++++.++++.|.+.+.+.+||+ +++++++|+++..++++.+. ........++.++|.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--d~~~~~~G~v~~~~i~~~~~-~~~~~~~~~v~~~~~~~ 68 (114)
T cd04604 3 ALPLVSPDTSLKDALLEMSRKGLGMTAVV--DEDGRLVGIFTDGDLRRALE-KGLDILTLPVADVMTRN 68 (114)
T ss_pred cccccCCCCcHHHHHHHHHhcCccEEEEE--cCCCCEEEEechHHHHHHHh-ccCccccCCHHHhhccC
Confidence 46778999999999999998889999999 67899999999999987654 33222234677877643
No 123
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.36 E-value=1.6e-06 Score=57.14 Aligned_cols=59 Identities=31% Similarity=0.325 Sum_probs=49.0
Q ss_pred CcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCCCCccCcccccccc
Q 032497 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTE 137 (139)
Q Consensus 70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~~~~~~~v~~im~~ 137 (139)
++.++.+++++.+|++.|.+++.+.+||+ |++++++|+++..|++... ...++.++|..
T Consensus 3 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~--d~~~~~~G~v~~~~l~~~~-------~~~~v~~~~~~ 61 (108)
T cd04596 3 DTGYLTTTDTVKDWHELNKETGHSRFPVV--DEKNKVVGIVTSKDVAGKD-------PDTTIEKVMTK 61 (108)
T ss_pred ccEEeCCCCCHHHHHHHHHHcCCCceeEE--CCCCeEEEEecHHHHhccc-------ccccHHHHhcC
Confidence 68899999999999999999999999999 7789999999999996421 23456666653
No 124
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=98.35 E-value=3e-06 Score=55.67 Aligned_cols=62 Identities=26% Similarity=0.396 Sum_probs=49.8
Q ss_pred CcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCCCCccCcccccccc
Q 032497 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTE 137 (139)
Q Consensus 70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~~~~~~~v~~im~~ 137 (139)
++.++++++++.++++.|.+++++++||+ ++ ++++|+++..|+++.. ..+.. ..++.++|..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~-~~~~G~v~~~~l~~~~-~~~~~--~~~v~~~~~~ 63 (110)
T cd04588 2 PLITLNPNATLREAARLFNTHHIHGAPVV--DD-GKLVGIVTLSDIAHAI-ARGLE--LAKVKDVMTK 63 (110)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCEEEEe--eC-CEEEEEEEHHHHHHHH-hcccc--ccCHHHHhcC
Confidence 68889999999999999999999999999 56 8999999999998754 23322 2456666643
No 125
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=98.35 E-value=2e-06 Score=72.33 Aligned_cols=62 Identities=16% Similarity=0.238 Sum_probs=54.5
Q ss_pred ccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHH
Q 032497 52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII 120 (139)
Q Consensus 52 ~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~ 120 (139)
...+|.++|++.. ++.++++++++.+|++.|.+++...+||+ |++++++|+||++|+++.+.
T Consensus 161 ~~~~V~eIMt~~~-----~lvtv~~~~sL~eAl~~m~~~~~~~LPVV--D~~g~LvGvITr~DIlk~~~ 222 (505)
T PLN02274 161 RETKLSEVMTSDD-----DLVTAPAGIDLEEAEAVLKDSKKGKLPLV--NEDGELVDLVTRTDVKRVKG 222 (505)
T ss_pred cCCcHHHHhccCC-----CcEEECCCCCHHHHHHHHHHcCCCEEEEE--cCCCeEEEEEEHHHHHHHhh
Confidence 3567999999721 27899999999999999999999999999 77899999999999988763
No 126
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=98.35 E-value=1.4e-06 Score=73.67 Aligned_cols=57 Identities=25% Similarity=0.311 Sum_probs=53.4
Q ss_pred cCcHHHHhh-hcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHH
Q 032497 53 STTISDILK-AKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRK 118 (139)
Q Consensus 53 ~~~v~dvm~-~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~ 118 (139)
..+|+++|+ + ++.++++++++.++.+.|.+++++.+||+ |++|+++|++|.+|+++.
T Consensus 245 ~~~V~~iM~~~-------~~~~~~~~~~~~~~~~~m~~~~~~~~PVv--d~~g~lvGiit~~dl~~~ 302 (546)
T PRK14869 245 SIPVSYIMTTE-------DLVTFSKDDYLEDVKEVMLKSRYRSYPVV--DEDGKVVGVISRYHLLSP 302 (546)
T ss_pred CCCHHHhccCC-------CcEEECCCCcHHHHHHHHHhcCCCceEEE--cCCCCEEEEEEHHHhhcc
Confidence 578999999 7 79999999999999999999999999999 788999999999999874
No 127
>COG0517 FOG: CBS domain [General function prediction only]
Probab=98.34 E-value=2.6e-06 Score=56.41 Aligned_cols=63 Identities=35% Similarity=0.511 Sum_probs=51.7
Q ss_pred CcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCCCCccCcccccccc
Q 032497 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTE 137 (139)
Q Consensus 70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~~~~~~~v~~im~~ 137 (139)
++.++.++.++.+|...|.++++..+||+ +.++++|++|.+|+++++...+.. ..++.++|+.
T Consensus 8 ~~~~v~~~~~~~~a~~~m~~~~~~~~~v~---~~~~l~Giit~~di~~~~~~~~~~--~~~v~~v~~~ 70 (117)
T COG0517 8 DVITVKPDTSVRDALLLMSENGVSAVPVV---DDGKLVGIITERDILRALAAGGKR--LLPVKEVMTK 70 (117)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEe---eCCEEEEEEEHHHHHHHHhccCCc--cccHHHhccC
Confidence 78999999999999999999999999999 344899999999999987543322 2257777764
No 128
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=98.33 E-value=1.1e-06 Score=73.78 Aligned_cols=58 Identities=22% Similarity=0.378 Sum_probs=54.4
Q ss_pred ccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHH
Q 032497 52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKI 119 (139)
Q Consensus 52 ~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~ 119 (139)
...+|+++|+. ++.++.+++-+-+|+-.|..++++++||+ ++|+++|++|..||++..
T Consensus 212 ~~~~V~evmT~-------p~~svd~~~~~feAml~m~r~~I~hl~V~---e~gq~~Gilt~~dIl~l~ 269 (610)
T COG2905 212 KTQKVSEVMTS-------PVISVDRGDFLFEAMLMMLRNRIKHLPVT---EDGQPLGILTLTDILRLF 269 (610)
T ss_pred cccchhhhhcc-------CceeecCcchHHHHHHHHHHhCCceeeee---cCCeeeEEeeHHHHHHhh
Confidence 35789999999 89999999999999999999999999998 789999999999999864
No 129
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.33 E-value=2.2e-06 Score=57.64 Aligned_cols=49 Identities=27% Similarity=0.330 Sum_probs=43.9
Q ss_pred CcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCC-CceEEEEeHHHHHHHHH
Q 032497 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQ-KSVAGIITERDYLRKII 120 (139)
Q Consensus 70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~-~~lvGivt~~dll~~~~ 120 (139)
++.++.++.++.+|++.|.+++.+.+||+ +++ ++++|+|+..|+++.+.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~--d~~~~~~~G~v~~~dl~~~~~ 51 (125)
T cd04631 2 DVVTVPPTTPIMEAAKIMVRNGFRRLPVV--DEGTGKLVGIITATDILKYLG 51 (125)
T ss_pred CceEeCCCCcHHHHHHHHHHcCcccceeE--eCCCCEEEEEEEHHHHHHHhh
Confidence 57889999999999999999999999999 565 99999999999987653
No 130
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=98.33 E-value=1.5e-06 Score=57.59 Aligned_cols=49 Identities=20% Similarity=0.335 Sum_probs=44.8
Q ss_pred HhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHH
Q 032497 59 ILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (139)
Q Consensus 59 vm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~ 117 (139)
+|.+ ++.++++++++.++++.|.+++.+.+||+ ++|+++|+||++|+++
T Consensus 56 ~m~~-------~~~~v~~~~~l~~~~~~~~~~~~~~~pVv---~~~~~~Gvvt~~dl~~ 104 (105)
T cd04591 56 YIDP-------SPFTVSPRTSLEKVHQLFRKLGLRHLLVV---DEGRLVGIITRKDLLK 104 (105)
T ss_pred hccC-------CCceECCCCcHHHHHHHHHHcCCCEEEEE---ECCeEEEEEEhhhhhc
Confidence 7776 78999999999999999999999999999 4789999999999864
No 131
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=98.31 E-value=3.4e-06 Score=55.29 Aligned_cols=63 Identities=29% Similarity=0.326 Sum_probs=48.9
Q ss_pred CcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCCCCccCcccccccc
Q 032497 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTE 137 (139)
Q Consensus 70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~~~~~~~v~~im~~ 137 (139)
++.++.+++++.++++.|.+.+.+.+||+ ++ ++++|+++.+|+.+... .+.. ...++.++|.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~-~~~~G~v~~~dl~~~~~-~~~~-~~~~~~~~~~~ 64 (111)
T cd04612 2 DVVTVPVDLTVDEVLALMFGERHRGYPVV--DD-GRLVGIVTLADIRRVPA-EGRE-ATVLVGDVMTR 64 (111)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCCCcceEe--eC-CeEEEEEEHHHHHHHHh-cCcc-cccCHHHhccC
Confidence 68899999999999999999999999999 56 99999999999987542 2221 11245555544
No 132
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=98.30 E-value=4.5e-06 Score=54.72 Aligned_cols=63 Identities=33% Similarity=0.581 Sum_probs=50.6
Q ss_pred CcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCCCCccCcccccccc
Q 032497 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTE 137 (139)
Q Consensus 70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~~~~~~~v~~im~~ 137 (139)
++.++.+++++.+|++.|.+.+.+.+||+ ++ ++++|+++.+|+.+... .+.. ...+++++|.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~--~~-~~~~G~v~~~~l~~~~~-~~~~-~~~~v~~~~~~ 64 (111)
T cd04611 2 QILTCPPDTSLAEAASRMRERRISSIVVV--DD-GRPLGIVTERDILRLLA-SGPD-LQTPVGEVMSS 64 (111)
T ss_pred CceEECCCCcHHHHHHHHHHcCCCEEEEe--eC-CEEEEEEeHHHHHHHHh-cCCC-CCcCHHHhcCC
Confidence 46789999999999999999999999999 44 89999999999987653 3332 35667777754
No 133
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.29 E-value=2.8e-06 Score=58.25 Aligned_cols=48 Identities=25% Similarity=0.457 Sum_probs=44.0
Q ss_pred CcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHH
Q 032497 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKI 119 (139)
Q Consensus 70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~ 119 (139)
++.++++++++.++++.|.++++.++||+ |++++++|+++..|+++..
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv--d~~~~~~Gvi~~~dl~~~~ 50 (135)
T cd04586 3 DVVTVSPETSVAEAARLMLDNHISGLPVV--DDDGRLVGIVSEGDLLRRA 50 (135)
T ss_pred CCEEeCCCCCHHHHHHHHHHcCCCCceEE--CCCCCEEEEeeHHHHHHHh
Confidence 68889999999999999999999999999 7789999999999997654
No 134
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.28 E-value=5.3e-06 Score=54.58 Aligned_cols=63 Identities=25% Similarity=0.286 Sum_probs=51.2
Q ss_pred CcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCCCCccCccccccccC
Q 032497 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEE 138 (139)
Q Consensus 70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~~~~~~~v~~im~~~ 138 (139)
++.++++++++.+|.+.|.+.+.+.+||+ |+ ++++|+++..|+++.. ..+. ...++.++|.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~--d~-~~~~G~v~~~dl~~~~-~~~~--~~~~~~~~~~~~ 65 (110)
T cd04595 3 PVKTVRPEATIEEARELLLRYGHTALPVV--EG-GRVVGIISRRDVEKAL-RHGL--GHAPVKDYMSTD 65 (110)
T ss_pred CceEeCCCCcHHHHHHHHHHcCCCeeeEe--eC-CEEEEEEEHHHHHHHH-hccc--ccCcHHHHhcCC
Confidence 67899999999999999999999999999 56 9999999999997754 2322 356677777543
No 135
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=98.28 E-value=2.1e-06 Score=71.84 Aligned_cols=68 Identities=26% Similarity=0.305 Sum_probs=57.2
Q ss_pred CcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCCCCccCcccc
Q 032497 54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGD 133 (139)
Q Consensus 54 ~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~~~~~~~v~~ 133 (139)
..++++|.+ ++.++++++++.++++.|.+++++.+||+ |++++++|+||.+|+... . . ...++.+
T Consensus 87 k~~~dim~~-------~~v~i~~~~tv~ea~~~m~~~~~~~lpVv--d~~g~lvGiVt~~DL~~~---~--~-~~~~V~d 151 (486)
T PRK05567 87 KRSESGVVT-------DPVTVTPDTTLAEALALMARYGISGVPVV--DENGKLVGIITNRDVRFE---T--D-LSQPVSE 151 (486)
T ss_pred hhhhhcccC-------CCeEeCCCCCHHHHHHHHHHhCCCEEEEE--ccCCEEEEEEEHHHhhhc---c--c-CCCcHHH
Confidence 357788887 89999999999999999999999999999 778999999999999542 1 1 2456778
Q ss_pred ccc
Q 032497 134 IMT 136 (139)
Q Consensus 134 im~ 136 (139)
+|+
T Consensus 152 im~ 154 (486)
T PRK05567 152 VMT 154 (486)
T ss_pred HcC
Confidence 876
No 136
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=98.28 E-value=5.4e-06 Score=54.50 Aligned_cols=49 Identities=16% Similarity=0.323 Sum_probs=44.2
Q ss_pred CcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCC-CceEEEEeHHHHHHHHH
Q 032497 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQ-KSVAGIITERDYLRKII 120 (139)
Q Consensus 70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~-~~lvGivt~~dll~~~~ 120 (139)
++.++++++++.+|++.|.+++.+++||+ +++ ++++|+++..|+++...
T Consensus 2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~--~~~~~~~~G~v~~~~l~~~~~ 51 (111)
T cd04590 2 DIVALDADDTLEEILELIAESGHSRFPVY--DGDLDNIIGVVHVKDLLRALA 51 (111)
T ss_pred ceEEEcCCCCHHHHHHHHhhCCCceEEEE--CCCCceEEEEEEHHHHHHHHH
Confidence 57889999999999999999999999999 666 89999999999988653
No 137
>PRK11573 hypothetical protein; Provisional
Probab=98.27 E-value=3.5e-06 Score=69.24 Aligned_cols=64 Identities=16% Similarity=0.304 Sum_probs=56.7
Q ss_pred CCccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHH
Q 032497 50 GFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKI 119 (139)
Q Consensus 50 ~~~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~ 119 (139)
.+...+|+|+|++.. +..+++.++++.++++.+.+++++.+||.+ ++.+.++|++..+|++...
T Consensus 183 ~l~~~~v~eiMtPr~-----~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~-~~~D~IiGiv~~kDll~~~ 246 (413)
T PRK11573 183 DLEKVTVDDIMVPRN-----EIVGIDINDDWKSILRQLTHSPHGRIVLYR-DSLDDAISMLRVREAYRLM 246 (413)
T ss_pred ccCCCChhhcCCccc-----eEEEEECCCCHHHHHHHHHhCCCceEEEEc-CCCCceEEEEEHHHHHHHh
Confidence 456789999999976 789999999999999999999999999995 3458999999999998754
No 138
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=98.27 E-value=2.4e-06 Score=61.58 Aligned_cols=92 Identities=18% Similarity=0.276 Sum_probs=63.6
Q ss_pred hcCCCchHHHHhhhCCccccccchhhhhhcccchhhhhhcCCccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHH
Q 032497 10 SHGNIVKSAVLQRIRLVNPMLRPVVSSRFESVSSARMEEHGFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQ 89 (139)
Q Consensus 10 ~~~~i~~~~v~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~ 89 (139)
...++++.+|.+.--+.+ .+..+.+.+...+.. ......+|+++|.. ++++++++.++...-+++..
T Consensus 92 ~~~g~SQlPVi~~~k~VG-sItE~~iv~~~le~~-----e~i~~~~vr~vM~e-------~fP~Vs~~~~l~vI~~LL~~ 158 (187)
T COG3620 92 RDKGISQLPVIEEDKVVG-SITENDIVRALLEGM-----ESIRSLRVREVMGE-------PFPTVSPDESLNVISQLLEE 158 (187)
T ss_pred HHcCCccCceeeCCeeee-eecHHHHHHHHhccc-----cchhhhhHHHHhcC-------CCCcCCCCCCHHHHHHHHhh
Confidence 345666777766633333 333334333221110 12235789999999 89999999999888777776
Q ss_pred cCCCEEEEEecCCCCceEEEEeHHHHHHHH
Q 032497 90 HNVGALVVVKPGEQKSVAGIITERDYLRKI 119 (139)
Q Consensus 90 ~~~~~lpVv~~d~~~~lvGivt~~dll~~~ 119 (139)
+ .++.|+ ++|+++||||..|+++.+
T Consensus 159 ~--~AVlV~---e~G~~vGIITk~DI~k~~ 183 (187)
T COG3620 159 H--PAVLVV---ENGKVVGIITKADIMKLL 183 (187)
T ss_pred C--CeEEEE---eCCceEEEEeHHHHHHHH
Confidence 5 478887 689999999999998865
No 139
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.27 E-value=6e-06 Score=54.73 Aligned_cols=65 Identities=32% Similarity=0.459 Sum_probs=49.1
Q ss_pred CcEEecCCCCHHHHHHHHHHcC-CCEEEEEecCCCCceEEEEeHHHHHHHHHHcCCCCccCccccccccC
Q 032497 70 SWLWCTTDDTVYDAVKSMTQHN-VGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEE 138 (139)
Q Consensus 70 ~~~~v~~~~tl~~a~~~m~~~~-~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~~~~~~~v~~im~~~ 138 (139)
++.++.+++++.++++.|.+++ ...+||+ + +++++|+++..|+++... .+......++.++|..+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~-~~~~~G~v~~~dl~~~~~-~~~~~~~~~i~~~~~~~ 67 (115)
T cd04620 2 HPLTVTPDTPVADAIALMSQQGDSSCVLVV--E-KGRLLGIFTERDIVRLTA-IGKDLSDLPIGEVMTQP 67 (115)
T ss_pred CCeEeCCCCcHHHHHHHHHhcCCCceEEEc--C-CCcEEEEEeHHHHHHHHh-cCCCccccCHHHhcCCC
Confidence 5788999999999999998888 6677777 4 589999999999987553 32222235677777543
No 140
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.26 E-value=3.2e-06 Score=56.58 Aligned_cols=47 Identities=34% Similarity=0.439 Sum_probs=43.4
Q ss_pred CcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHH
Q 032497 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRK 118 (139)
Q Consensus 70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~ 118 (139)
++.++++++++.++++.|.+.+.+++||+ |++++++|+++..|+++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~--d~~~~~~G~v~~~~l~~~ 48 (122)
T cd04635 2 EPVTCTPDDPVSKVWDLMLESGFTGLPVV--QKAGELIGIITRRDIIRA 48 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCCCcccEE--CCCCcEEEEEEcHHHHhh
Confidence 57889999999999999999999999999 778999999999999764
No 141
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.25 E-value=4.4e-06 Score=58.21 Aligned_cols=48 Identities=25% Similarity=0.518 Sum_probs=43.6
Q ss_pred CcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHH
Q 032497 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII 120 (139)
Q Consensus 70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~ 120 (139)
++.++++++++.++++.|.+.+++.+||+ |+ ++++|++|..|+++.+.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv--d~-~~~~G~v~~~dl~~~~~ 49 (143)
T cd04634 2 NPITCNADDTISDAARLLRENKISGAPVL--DG-GKLVGIVSESDILKLLV 49 (143)
T ss_pred CcEEecCCCCHHHHHHHHHHcCCCcceEe--EC-CeEEEEecHHHHHHHHH
Confidence 68899999999999999999999999999 55 89999999999987653
No 142
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=98.23 E-value=1.1e-05 Score=52.04 Aligned_cols=49 Identities=37% Similarity=0.588 Sum_probs=44.3
Q ss_pred CcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHH
Q 032497 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII 120 (139)
Q Consensus 70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~ 120 (139)
++.+++++.++.++.+.|..++...+||+ +++++++|+++.+|+++...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~~~~G~v~~~~l~~~~~ 50 (113)
T cd02205 2 DVVTVSPDDTVAEALRLMLEHGISGLPVV--DDDGRLVGIVTERDLLRALA 50 (113)
T ss_pred CceEecCCCCHHHHHHHHHhcCCceEEEE--CCCCCEEEEEeHHHHHHHHH
Confidence 57889999999999999999999999999 67799999999999987664
No 143
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.23 E-value=4.2e-06 Score=56.70 Aligned_cols=48 Identities=29% Similarity=0.387 Sum_probs=44.1
Q ss_pred CcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHH
Q 032497 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKI 119 (139)
Q Consensus 70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~ 119 (139)
.+.++++++++.+|++.|.+++++.+||+ |++++++|+++..|+++..
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~i~V~--d~~~~~~Giv~~~dl~~~~ 49 (126)
T cd04642 2 KVVSIDSDERVLDAFKLMRKNNISGLPVV--DEKGKLIGNISASDLKGLL 49 (126)
T ss_pred CeEEECCCccHHHHHHHHHHhCCCcccEE--CCCCcEEEEEEHHHhhhhh
Confidence 57889999999999999999999999999 6789999999999998754
No 144
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.23 E-value=5.6e-06 Score=55.27 Aligned_cols=48 Identities=27% Similarity=0.410 Sum_probs=43.0
Q ss_pred CcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHH
Q 032497 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII 120 (139)
Q Consensus 70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~ 120 (139)
++.++.+++++.++++.|.+++.+.+||+ ++ ++++|++|..|+++.+.
T Consensus 2 ~~~~i~~~~~~~~~~~~l~~~~~~~i~V~--~~-~~~~G~v~~~~l~~~~~ 49 (121)
T cd04633 2 PVITVSPDDRVSHARRLMLDHDISRLPVI--EG-GKLVGIVTEKDIADALR 49 (121)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeeEEE--EC-CEEEEEEchHHHHHhhh
Confidence 57889999999999999999999999999 44 99999999999987543
No 145
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.22 E-value=5.9e-06 Score=55.66 Aligned_cols=49 Identities=14% Similarity=0.353 Sum_probs=44.1
Q ss_pred CcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCC-CceEEEEeHHHHHHHHH
Q 032497 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQ-KSVAGIITERDYLRKII 120 (139)
Q Consensus 70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~-~~lvGivt~~dll~~~~ 120 (139)
++.++.+++++.+|++.|.++++.++||+ |++ ++++|+|+..|+++.+.
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~--d~~~~~~~Giv~~~dl~~~~~ 51 (123)
T cd04627 2 PFIPVPSTASLFQAIEILGSGGIHRVAVT--EEESGEVIGILSQRRLVEFLW 51 (123)
T ss_pred CceecCCCCCHHHHHHHHhhCCcceEEEE--eCCCCcEEEEEEHHHHHHHHH
Confidence 67889999999999999999999999999 666 89999999999987653
No 146
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=98.22 E-value=6.8e-06 Score=54.61 Aligned_cols=60 Identities=22% Similarity=0.253 Sum_probs=48.1
Q ss_pred CcEEecCCCCHHHHHHHHHHcCCCEEEEEecCC---CCceEEEEeHHHHHHHHHHcCCCCccCcccccccc
Q 032497 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGE---QKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTE 137 (139)
Q Consensus 70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~---~~~lvGivt~~dll~~~~~~~~~~~~~~v~~im~~ 137 (139)
++.++.+++++.++++.|.+++.+.+||+ |+ +++++|+++.+|++... . ...++.++|..
T Consensus 3 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~--d~~~~~~~~~G~v~~~dl~~~~--~----~~~~v~~~~~~ 65 (114)
T cd04602 3 DPSVLSPDHTVADVLEIKEKKGFSGIPVT--EDGKSGGKLLGIVTSRDIDFLT--D----SETPLSEVMTP 65 (114)
T ss_pred CCeEcCCCCCHHHHHHHHHHcCCCceEEe--eCCCcCCEEEEEEEhHHhhhhh--c----cCCCHHHhcCC
Confidence 57889999999999999999999999999 54 78999999999986421 1 13456777754
No 147
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=98.21 E-value=3.3e-06 Score=71.04 Aligned_cols=73 Identities=26% Similarity=0.247 Sum_probs=57.8
Q ss_pred CcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCC---CCceEEEEeHHHHHHHHHHcCCCCccCc
Q 032497 54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGE---QKSVAGIITERDYLRKIIVQGRSSKSTK 130 (139)
Q Consensus 54 ~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~---~~~lvGivt~~dll~~~~~~~~~~~~~~ 130 (139)
.+|+++|.... .++.++++++|+.+|++.|.+++++.+||+ |+ +++++|+||.+|+... .. ..+.+
T Consensus 94 ~kVk~~~~g~i----~~~~tV~pd~tl~eAl~~m~~~~~~~vpVV--D~~~~~gkLvGIVT~~DLr~~---~~--~~~~~ 162 (502)
T PRK07107 94 RRVKNYKAGFV----VSDSNLTPDNTLADVLDLKEKTGHSTVAVT--EDGTAHGKLLGIVTSRDYRIS---RM--SLDTK 162 (502)
T ss_pred HHHHHHhcCCc----CCCCEeCCCCcHHHHHHHHHhcCCCeEEEE--eCCCcCCEEEEEEEcHHhhcc---cc--CCCCC
Confidence 35788886321 146799999999999999999999999999 44 6899999999999532 11 24678
Q ss_pred ccccccc
Q 032497 131 VGDIMTE 137 (139)
Q Consensus 131 v~~im~~ 137 (139)
|+++|++
T Consensus 163 V~dIMt~ 169 (502)
T PRK07107 163 VKDFMTP 169 (502)
T ss_pred HHHHhCC
Confidence 9999985
No 148
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=98.20 E-value=3.5e-06 Score=69.96 Aligned_cols=68 Identities=24% Similarity=0.310 Sum_probs=55.6
Q ss_pred CcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCC---CceEEEEeHHHHHHHHHHcCCCCccCc
Q 032497 54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQ---KSVAGIITERDYLRKIIVQGRSSKSTK 130 (139)
Q Consensus 54 ~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~---~~lvGivt~~dll~~~~~~~~~~~~~~ 130 (139)
.++++.|.+ ++.++++++|+.++++.|.+++++.+||+ |++ ++++|+||.+|++... . ...+
T Consensus 80 k~~~~~~~~-------~~vtl~~~~tv~eal~~m~~~~~s~lpVv--d~~~~~~~lvGIVt~rDL~~~~---~---~~~~ 144 (450)
T TIGR01302 80 KRAENGIIS-------DPVTISPETTVADVLELMERKGISGIPVV--EDGDMTGKLVGIITKRDIRFVK---D---KGKP 144 (450)
T ss_pred ccccCceec-------CceEeCCCCCHHHHHHHHHHcCCCEEEEE--eCCCCCCeEEEEEEHHHHhhhh---c---CCCC
Confidence 345666666 79999999999999999999999999999 555 7999999999996421 1 2457
Q ss_pred cccccc
Q 032497 131 VGDIMT 136 (139)
Q Consensus 131 v~~im~ 136 (139)
+.++|+
T Consensus 145 V~dvm~ 150 (450)
T TIGR01302 145 VSEVMT 150 (450)
T ss_pred HHHhhC
Confidence 888887
No 149
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.20 E-value=4.9e-06 Score=55.38 Aligned_cols=56 Identities=21% Similarity=0.278 Sum_probs=47.9
Q ss_pred cCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCC---EEEEEecCCCCceEEEEeHHHHHH
Q 032497 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVG---ALVVVKPGEQKSVAGIITERDYLR 117 (139)
Q Consensus 53 ~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~---~lpVv~~d~~~~lvGivt~~dll~ 117 (139)
..++.++|.+ ++..+.+++++.++++.|.+++.. ..||+ +++++++|+||..|+++
T Consensus 60 ~~~v~~~~~~-------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv--~~~~~~~Gvvs~~di~~ 118 (119)
T cd04598 60 KKPVSEVMDP-------DPLIVEADTPLEEVSRLATGRDSQNLYDGFIV--TEEGRYLGIGTVKDLLR 118 (119)
T ss_pred CCcHHHhcCC-------CcEEecCCCCHHHHHHHHHcCCcccccccEEE--eeCCeEEEEEEHHHHhc
Confidence 4579999988 789999999999999999988753 44677 57899999999999864
No 150
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=98.20 E-value=1.8e-06 Score=69.07 Aligned_cols=72 Identities=28% Similarity=0.360 Sum_probs=63.1
Q ss_pred cCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCCCCccCccc
Q 032497 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVG 132 (139)
Q Consensus 53 ~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~~~~~~~v~ 132 (139)
-.+|.|+|+|-. +..++.+++++.+..++..+.+.+.+||+ |...+++|+||.+|+..+ ..+.++.
T Consensus 187 I~~Vedi~~P~~-----~~~yL~~~d~v~d~~~l~~kt~~sRfPVv--n~~~kvvGvVt~rDv~~~-------~~~t~ie 252 (432)
T COG4109 187 IITVEDIMTPLE-----DTSYLRETDTVEDWLDLVEKTGHSRFPVV--NRSMKVVGVVTMRDVLDK-------KPSTTIE 252 (432)
T ss_pred eeeHHHhccccc-----cceeccccccHHHHHHHHHHcCCCcccee--cccceEEEEEEehhhhcC-------CCCccHH
Confidence 468999999633 68899999999999999999999999999 789999999999999653 2578899
Q ss_pred cccccC
Q 032497 133 DIMTEE 138 (139)
Q Consensus 133 ~im~~~ 138 (139)
.+|+++
T Consensus 253 KVMtkn 258 (432)
T COG4109 253 KVMTKN 258 (432)
T ss_pred HHhccC
Confidence 999874
No 151
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=98.20 E-value=9.5e-06 Score=53.84 Aligned_cols=47 Identities=28% Similarity=0.395 Sum_probs=42.9
Q ss_pred CcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHH
Q 032497 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKI 119 (139)
Q Consensus 70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~ 119 (139)
++.++++++++.++++.|.+.+.+.+||+ |+ ++++|+++..|+++..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~--d~-~~~~G~i~~~~l~~~~ 48 (122)
T cd04585 2 NPITVTPDTSLMEALKLMKENSIRRLPVV--DR-GKLVGIVTDRDLKLAS 48 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHhCCcceeeEe--cC-CeEEEEEeHHHHHHhh
Confidence 57889999999999999999999999999 55 9999999999998765
No 152
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=98.19 E-value=4.5e-06 Score=65.69 Aligned_cols=58 Identities=19% Similarity=0.287 Sum_probs=52.0
Q ss_pred CcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHH
Q 032497 54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIV 121 (139)
Q Consensus 54 ~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~ 121 (139)
.++.++|.+ +.++++++++.++++.|.+++.+.+||+ |+.|.++|+||..|++..++.
T Consensus 133 ~~l~~l~r~--------~~~V~e~~~l~~~L~~m~~~~~~~a~Vv--De~G~viGiVTleDIle~ivG 190 (292)
T PRK15094 133 FSMDKVLRQ--------AVVVPESKRVDRMLKEFRSQRYHMAIVI--DEFGGVSGLVTIEDILELIVG 190 (292)
T ss_pred CCHHHHcCC--------CcCcCCCCcHHHHHHHHHhcCCEEEEEE--eCCCCEEEEeEHHHHHHHHhC
Confidence 458888876 5689999999999999999999999999 778899999999999998864
No 153
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=98.19 E-value=8.1e-06 Score=52.74 Aligned_cols=53 Identities=26% Similarity=0.484 Sum_probs=48.3
Q ss_pred HHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHH
Q 032497 56 ISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (139)
Q Consensus 56 v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~ 117 (139)
+.++|.. ++..+.+++++.++++.|.+.+.+.+||+ +++++++|+++..|+++
T Consensus 60 ~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~V~--~~~~~~~G~i~~~dl~~ 112 (113)
T cd02205 60 VGDVMTR-------DVVTVSPDTSLEEAAELMLEHGIRRLPVV--DDEGRLVGIVTRSDILR 112 (113)
T ss_pred HHHHhcC-------CceecCCCcCHHHHHHHHHHcCCCEEEEE--cCCCcEEEEEEHHHhhc
Confidence 7788887 78999999999999999999999999999 67799999999999864
No 154
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=98.18 E-value=5.4e-06 Score=54.26 Aligned_cols=60 Identities=27% Similarity=0.384 Sum_probs=48.7
Q ss_pred CcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCCCCccCcccccccc
Q 032497 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTE 137 (139)
Q Consensus 70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~~~~~~~v~~im~~ 137 (139)
++.++++++++.++++.|.+++.+.+||+ |++|+++|+++.+++++.. . ...++.++|..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~--d~~~~~~G~v~~~~l~~~~-----~-~~~~v~~~~~~ 62 (110)
T cd04601 3 DPITVSPDATVAEALELMAEYGISGLPVV--DDDGKLVGIVTNRDLRFET-----D-LDKPVSEVMTP 62 (110)
T ss_pred CCeEeCCCCcHHHHHHHHHHcCCceEEEE--cCCCEEEEEEEhhHeeecc-----c-CCCCHHHhccc
Confidence 68899999999999999999999999999 6779999999999985421 1 24456666643
No 155
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.16 E-value=7.2e-06 Score=53.64 Aligned_cols=54 Identities=26% Similarity=0.363 Sum_probs=47.9
Q ss_pred CcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHH
Q 032497 54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (139)
Q Consensus 54 ~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~ 117 (139)
.++.++|.. ++.++.+++++.++++.|.+++...+||+ + +++++|++|..|+++
T Consensus 52 ~~~~~~~~~-------~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv--d-~~~~~G~it~~d~~~ 105 (106)
T cd04638 52 EQLALLMTR-------DPPTVSPDDDVKEAAKLMVENNIRRVPVV--D-DGKLVGIVTVADIVR 105 (106)
T ss_pred chHHHHhcC-------CCceECCCCCHHHHHHHHHHcCCCEEEEE--E-CCEEEEEEEHHHhhc
Confidence 467888887 78999999999999999999999999999 4 479999999999864
No 156
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.16 E-value=7.5e-06 Score=53.21 Aligned_cols=45 Identities=36% Similarity=0.434 Sum_probs=40.9
Q ss_pred CcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHH
Q 032497 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (139)
Q Consensus 70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~ 117 (139)
++.++.+++++.++++.|.+++.+.+||+ | +++++|+++..|+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~--d-~~~~~Giv~~~~l~~ 46 (105)
T cd04599 2 DPITIDPLDSVGRAARLMEKHRIGGLPVV--E-DGKLVGIITSRDVRR 46 (105)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEE--E-CCEEEEEEehHHhhc
Confidence 57889999999999999999999999999 5 589999999999975
No 157
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.15 E-value=5.5e-06 Score=55.15 Aligned_cols=66 Identities=18% Similarity=0.261 Sum_probs=49.3
Q ss_pred CcEEecCCCCHHHHHHHHHHcC-CCEEEEEecCCCCceEEEEeHHHHHHHHHHc--CCCCccCccccccccC
Q 032497 70 SWLWCTTDDTVYDAVKSMTQHN-VGALVVVKPGEQKSVAGIITERDYLRKIIVQ--GRSSKSTKVGDIMTEE 138 (139)
Q Consensus 70 ~~~~v~~~~tl~~a~~~m~~~~-~~~lpVv~~d~~~~lvGivt~~dll~~~~~~--~~~~~~~~v~~im~~~ 138 (139)
++.++++++++.++++.|...+ .+.+||+ |+ ++++|+++..|+++.+... .......++.++|.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vv--d~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~ 70 (119)
T cd04598 2 PAPTVSPDTTVNDVLERFERDPDLSALAVV--DD-GRPVGLIMREALMELLSTPYGRALYGKKPVSEVMDPD 70 (119)
T ss_pred CcCccCCCCcHHHHHHHHHhCCCccEEEEE--EC-CeeEEEEEHHHHHHHHhchhhHHHHcCCcHHHhcCCC
Confidence 5678899999999999998877 8899999 66 9999999999997654210 0001244577777643
No 158
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.14 E-value=1e-05 Score=56.38 Aligned_cols=55 Identities=25% Similarity=0.437 Sum_probs=49.5
Q ss_pred cCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHH
Q 032497 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (139)
Q Consensus 53 ~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~ 117 (139)
..++.++|.+ ++.++.+++++.++++.|.+.+...+||+ ++ ++++|++|.+|++.
T Consensus 88 ~~~v~~~~~~-------~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv--~~-~~~~Gvvt~~dl~~ 142 (143)
T cd04634 88 KMKVRDIMTK-------KVITISPDASIEDAAELMVRHKIKRLPVV--ED-GRLVGIVTRGDIIE 142 (143)
T ss_pred cCCHHHHcCC-------CCeEECCCCcHHHHHHHHHHcCCCEEEEE--EC-CEEEEEEEHHHhhc
Confidence 4578999988 79999999999999999999999999999 45 89999999999853
No 159
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=98.13 E-value=7.3e-06 Score=68.84 Aligned_cols=60 Identities=15% Similarity=0.302 Sum_probs=53.3
Q ss_pred cCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHH
Q 032497 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKI 119 (139)
Q Consensus 53 ~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~ 119 (139)
..++.++|+++. ++.+++++.++.+|+++|.+++...+||+ |++++++|+||.+|+++..
T Consensus 158 ~~~V~diMt~~~-----~lvtv~~~~sl~eAl~lm~e~~i~~LPVV--d~~g~liGIIT~~DIl~~~ 217 (495)
T PTZ00314 158 STPVSEVMTPRE-----KLVVGNTPISLEEANEVLRESRKGKLPIV--NDNGELVALVSRSDLKKNR 217 (495)
T ss_pred CCCHHHhhCCcC-----CceEeCCCCCHHHHHHHHHHcCCCeEEEE--cCCCcEEEEEEehHhhhcc
Confidence 467999998632 57899999999999999999999999999 7889999999999998763
No 160
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=98.13 E-value=1e-05 Score=52.86 Aligned_cols=54 Identities=22% Similarity=0.337 Sum_probs=45.8
Q ss_pred cCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHH
Q 032497 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (139)
Q Consensus 53 ~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~ 117 (139)
..++.++|.+ ++.++++++++.++.+.|.+ . ..+||+ +++++++|++|.+|+++
T Consensus 56 ~~~~~~~~~~-------~~~~v~~~~~l~~~~~~~~~-~-~~~~vv--~~~~~~~Gvvt~~di~~ 109 (110)
T cd04609 56 SLPVREVMGE-------PLPTVDPDAPIEELSELLDR-G-NVAVVV--DEGGKFVGIITRADLLK 109 (110)
T ss_pred CcCHHHHhcC-------CCceeCCCCcHHHHHHHHHh-C-CceeEE--ecCCeEEEEEeHHHhhc
Confidence 3579999987 78999999999999999988 3 347888 67799999999999864
No 161
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=98.12 E-value=6.7e-06 Score=69.23 Aligned_cols=61 Identities=16% Similarity=0.245 Sum_probs=51.4
Q ss_pred CcEEecCCCCHHHHHHHHHHcCCCEEEEEecCC---CCceEEEEeHHHHHHHHHHcCCCCccCccccccccC
Q 032497 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGE---QKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEE 138 (139)
Q Consensus 70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~---~~~lvGivt~~dll~~~~~~~~~~~~~~v~~im~~~ 138 (139)
++.++++++|+.+|++.|.+++++.+||+ |+ +++++|+||.+|+... . ..+.+|.++|+++
T Consensus 109 dpvtV~pd~tV~dA~~lm~~~~~~~lpVv--D~~~~~GklvGIVT~~DL~~v---~---~~~~~V~eIMt~~ 172 (505)
T PLN02274 109 DPVVKSPSSTISSLDELKASRGFSSVCVT--ETGTMGSKLLGYVTKRDWDFV---N---DRETKLSEVMTSD 172 (505)
T ss_pred CCeeeCCCCcHHHHHHHHHhcCCceEEEE--eCCCcCCeEEEEEEHHHHhhc---c---ccCCcHHHHhccC
Confidence 79999999999999999999999999999 44 4899999999999532 1 2367788898753
No 162
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=98.12 E-value=7.9e-06 Score=68.31 Aligned_cols=69 Identities=28% Similarity=0.365 Sum_probs=57.2
Q ss_pred cCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCCCCccCccc
Q 032497 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVG 132 (139)
Q Consensus 53 ~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~~~~~~~v~ 132 (139)
..++.++|.+ ++.++.+++++.++++.|.+++++.+||+ | +++++|+||.+|+.. .. ...++.
T Consensus 87 ~VKv~eim~~-------~pvtv~p~~tI~eA~~lm~~~~~~~~vVv--D-~gklvGIVT~rDL~~------~~-~~~~V~ 149 (475)
T TIGR01303 87 FVKSRDLVLD-------TPITLAPHDTVSDAMALIHKRAHGAAVVI--L-EDRPVGLVTDSDLLG------VD-RFTQVR 149 (475)
T ss_pred hcchhhcccc-------CCeEECCCCCHHHHHHHHHhcCCeEEEEE--E-CCEEEEEEEHHHhhc------CC-CCCCHH
Confidence 4678888888 89999999999999999999999999998 4 478999999999842 12 246788
Q ss_pred cccccC
Q 032497 133 DIMTEE 138 (139)
Q Consensus 133 ~im~~~ 138 (139)
++|+++
T Consensus 150 dIMt~~ 155 (475)
T TIGR01303 150 DIMSTD 155 (475)
T ss_pred HHccCC
Confidence 888765
No 163
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=98.12 E-value=9e-06 Score=67.52 Aligned_cols=58 Identities=19% Similarity=0.380 Sum_probs=53.3
Q ss_pred cCcHHHHhh-hcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHH
Q 032497 53 STTISDILK-AKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKI 119 (139)
Q Consensus 53 ~~~v~dvm~-~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~ 119 (139)
..++.++|+ . ++.++++++++.++++.|.+++...+||+ |++++++|+||.+|+++..
T Consensus 142 ~~~V~dvm~~~-------~~~~V~~~~sl~eal~~m~~~~~~~lpVV--De~G~lvGiVT~~DIl~~~ 200 (450)
T TIGR01302 142 GKPVSEVMTRE-------EVITVPEGIDLEEALKVLHEHRIEKLPVV--DKNGELVGLITMKDIVKRR 200 (450)
T ss_pred CCCHHHhhCCC-------CCEEECCCCcHHHHHHHHHHcCCCeEEEE--cCCCcEEEEEEhHHhhhcc
Confidence 467999998 4 68999999999999999999999999999 7899999999999998865
No 164
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=98.10 E-value=6.1e-06 Score=69.32 Aligned_cols=60 Identities=23% Similarity=0.307 Sum_probs=50.5
Q ss_pred CcEEecCCCCHHHHHHHHHHcCCCEEEEEecCC---CCceEEEEeHHHHHHHHHHcCCCCccCcccccccc
Q 032497 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGE---QKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTE 137 (139)
Q Consensus 70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~---~~~lvGivt~~dll~~~~~~~~~~~~~~v~~im~~ 137 (139)
++.++++++|+.+|+++|.+++++.+||+ |+ +++++|+||.+|+... . . .+.++.++|++
T Consensus 105 dpvtv~pd~tv~eA~~lm~~~~~s~vpVv--d~~~~~gkLvGIVt~~DL~~~---~--~-~~~~V~diMt~ 167 (495)
T PTZ00314 105 DPYVLSPNHTVADVLEIKEKKGFSSILIT--VDGKVGGKLLGIVTSRDIDFV---K--D-KSTPVSEVMTP 167 (495)
T ss_pred CCeecCCCCCHHHHHHHHHHcCCcEEEEE--eCCccCCeEEEEEEHHHHhhc---c--c-CCCCHHHhhCC
Confidence 89999999999999999999999999999 44 4899999999998521 1 1 35678888875
No 165
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=98.07 E-value=1.5e-05 Score=66.15 Aligned_cols=64 Identities=20% Similarity=0.244 Sum_probs=57.9
Q ss_pred hcCCccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHH
Q 032497 48 EHGFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII 120 (139)
Q Consensus 48 ~~~~~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~ 120 (139)
..+.....++++|.+ .++++.+++...++.+.+.+++.-++||| |++++++|++|..|++.-+-
T Consensus 190 l~a~~~~~i~~im~~-------~~~~V~~~~dqeevA~~~~~ydl~a~PVV--d~~~~LiG~itiDDiidvi~ 253 (451)
T COG2239 190 LTAEPDELLKDLMED-------DVVSVLADDDQEEVARLFEKYDLLAVPVV--DEDNRLIGIITIDDIIDVIE 253 (451)
T ss_pred hcCCcHhHHHHHhcc-------cceeecccCCHHHHHHHHHHhCCeecceE--CCCCceeeeeeHHHHHHHHH
Confidence 334467889999999 89999999999999999999999999999 89999999999999988654
No 166
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.06 E-value=2.3e-05 Score=52.36 Aligned_cols=47 Identities=28% Similarity=0.524 Sum_probs=42.7
Q ss_pred CcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHH
Q 032497 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKI 119 (139)
Q Consensus 70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~ 119 (139)
++.++.+++++.++.+.|.+++++.+||+ |+ ++++|+++..|+.+.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~--d~-~~~~G~v~~~~l~~~~ 48 (122)
T cd04637 2 RVVTVEMDDRLEEVREIFEKHKFHHLLVV--ED-NELVGVISDRDYLKAI 48 (122)
T ss_pred CceEeCCCCCHHHHHHHHHhCCCCEEEEE--eC-CeEEEEEEHHHHHHHH
Confidence 57889999999999999999999999999 55 8999999999998754
No 167
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=98.05 E-value=1.6e-05 Score=66.59 Aligned_cols=58 Identities=21% Similarity=0.369 Sum_probs=53.3
Q ss_pred cCcHHHHhh-hcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHH
Q 032497 53 STTISDILK-AKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKI 119 (139)
Q Consensus 53 ~~~v~dvm~-~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~ 119 (139)
..++.++|. . ++.++++++++.++++.|.+++.+.+||+ |++++++|+||.+|+++.+
T Consensus 146 ~~~V~dim~~~-------~~v~v~~~~sl~eal~~m~~~~~~~lpVV--De~g~lvGiIT~~DLl~~~ 204 (486)
T PRK05567 146 SQPVSEVMTKE-------RLVTVPEGTTLEEALELLHEHRIEKLPVV--DDNGRLKGLITVKDIEKAE 204 (486)
T ss_pred CCcHHHHcCCC-------CCEEECCCCCHHHHHHHHHHcCCCEEEEE--cCCCcEEEEEEhHHhhhhh
Confidence 357999998 5 68999999999999999999999999999 7889999999999998875
No 168
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=98.04 E-value=2.4e-05 Score=51.15 Aligned_cols=43 Identities=23% Similarity=0.302 Sum_probs=39.5
Q ss_pred EEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHH
Q 032497 72 LWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (139)
Q Consensus 72 ~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~ 117 (139)
.++++++++.++++.|.+.+.+.+||+ |+ ++++|+++.+|+++
T Consensus 4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~--d~-~~~~G~v~~~~l~~ 46 (104)
T cd04594 4 IKVKDYDKVYEAKRIMIENDLLSLPVV--DY-NKFLGAVYLKDIEN 46 (104)
T ss_pred eEECCCCCHHHHHHHHHHcCCcEEEEE--EC-CEEEEEEEHHHHhh
Confidence 678999999999999999999999999 56 99999999999875
No 169
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=98.02 E-value=1.7e-05 Score=60.92 Aligned_cols=50 Identities=18% Similarity=0.348 Sum_probs=46.1
Q ss_pred cCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEe
Q 032497 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIIT 111 (139)
Q Consensus 53 ~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt 111 (139)
..++.++|.+ ++.++.+++++.+|++.|.+++...+||+ |++|+++|+|+
T Consensus 219 ~~~v~~im~~-------~~~~v~~~~~l~~a~~~m~~~~~~~lpVv--d~~g~l~GvI~ 268 (268)
T TIGR00393 219 KSEVRDFMTL-------GPKTFKLDALLLEALEFLERRKITSLVVV--DDHNKVLGVLH 268 (268)
T ss_pred cCcHHHhCCC-------CCeEECCCCcHHHHHHHHHHcCCcEEEEE--CCCCeEEEEEC
Confidence 4679999988 78999999999999999999999999999 67889999985
No 170
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=98.01 E-value=2.7e-05 Score=51.80 Aligned_cols=48 Identities=29% Similarity=0.415 Sum_probs=43.4
Q ss_pred CcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHH
Q 032497 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKI 119 (139)
Q Consensus 70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~ 119 (139)
++.++++++++.+|++.|.+.+.+++||+ |++++++|+++..|+.+..
T Consensus 2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~--d~~~~~~G~v~~~~l~~~~ 49 (121)
T cd04584 2 DVVTITPTTTIAEALELMREHKIRHLPVV--DEEGRLVGIVTDRDLRDAS 49 (121)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCcccEE--CCCCcEEEEEEHHHHHHHh
Confidence 57889999999999999999999999999 6779999999999997643
No 171
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=97.98 E-value=2.6e-05 Score=64.02 Aligned_cols=58 Identities=16% Similarity=0.312 Sum_probs=51.5
Q ss_pred cHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHc
Q 032497 55 TISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQ 122 (139)
Q Consensus 55 ~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~ 122 (139)
++.++|++ +.++++++++.++++.|++++.+..+|+ |+.|..+|+||..|++..++.+
T Consensus 256 ~l~~~~~~--------~~~Vpe~~~l~~ll~~m~~~~~~~aiVv--DE~G~~~GiVT~eDileeivge 313 (408)
T TIGR03520 256 DWQSLLRE--------PYFVPENKKLDDLLRDFQEKKNHLAIVV--DEYGGTSGLVTLEDIIEEIVGD 313 (408)
T ss_pred CHHHHcCC--------CeEeCCCCcHHHHHHHHHhcCceEEEEE--cCCCCEEEEEEHHHHHHHHhCC
Confidence 46666655 7899999999999999999999999999 7889999999999999998644
No 172
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.98 E-value=1.6e-05 Score=52.30 Aligned_cols=55 Identities=29% Similarity=0.387 Sum_probs=42.8
Q ss_pred ecCCCCHHHHHHHHHHcC-----CCEEEEEecCCCCceEEEEeHHHHHHHHHHcCCCCccCcccccccc
Q 032497 74 CTTDDTVYDAVKSMTQHN-----VGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTE 137 (139)
Q Consensus 74 v~~~~tl~~a~~~m~~~~-----~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~~~~~~~v~~im~~ 137 (139)
+.+++++.++++.|.+++ +..+||+ |++++++|+++.+++++. . .+.++.++|.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv--d~~~~~~G~v~~~~l~~~------~-~~~~v~~~~~~ 61 (109)
T cd04606 2 VREDWTVGEALEYLRRNADDPETIYYIYVV--DEEGRLLGVVSLRDLLLA------D-PDTPVSDIMDT 61 (109)
T ss_pred ccccCcHHHHHHHHHhccCcccceeEEEEE--CCCCCEEEEEEHHHHhcC------C-CcchHHHHhCC
Confidence 568999999999998877 4789999 678999999999998642 1 23456666654
No 173
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.93 E-value=4.2e-05 Score=49.77 Aligned_cols=58 Identities=29% Similarity=0.458 Sum_probs=46.6
Q ss_pred CcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCCCCccCcccccccc
Q 032497 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTE 137 (139)
Q Consensus 70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~~~~~~~v~~im~~ 137 (139)
++.++++++++.++++.|.+.+.+.+||+ ++ ++++|+++..|++.. . .+.++.++|..
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~--d~-~~~~g~v~~~~l~~~------~-~~~~~~~~~~~ 60 (107)
T cd04610 3 DVITVSPDNTVKDVIKLIKETGHDGFPVV--DN-GKVVGIVSARDLLGK------D-PDETVEEIMSK 60 (107)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCeeeEe--EC-CEEEEEEEHHHhhcc------C-ccccHHHhCCC
Confidence 57889999999999999998888899999 55 899999999998642 1 23456666643
No 174
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=97.84 E-value=4.8e-05 Score=62.77 Aligned_cols=67 Identities=18% Similarity=0.363 Sum_probs=59.3
Q ss_pred CCccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHc
Q 032497 50 GFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQ 122 (139)
Q Consensus 50 ~~~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~ 122 (139)
.+...+|+++|++.. +..+++.+.++.++.+.+.+++++.+||++ ++.+.++|+++.+|++......
T Consensus 202 ~l~~~~v~eiMtPR~-----~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~-~~~D~iiGiv~~Kdll~~~~~~ 268 (429)
T COG1253 202 DLDDRTVREIMTPRT-----DIVALDLTDTVEELIELILESGHSRIPVYD-GDLDNIIGIVHVKDLLRALLDG 268 (429)
T ss_pred ccCCcEeeeEeeecc-----cEEEEcCCCCHHHHHHHHHhCCCCeeeEEc-CCCCcEEEEEEHHHHHHHHhcC
Confidence 456789999999965 789999999999999999999999999995 4778999999999999987544
No 175
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=97.80 E-value=3.7e-05 Score=63.90 Aligned_cols=75 Identities=21% Similarity=0.352 Sum_probs=61.5
Q ss_pred hcCCccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHH-----cCCCEEEEEecCCCCceEEEEeHHHHHHHHHHc
Q 032497 48 EHGFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQ-----HNVGALVVVKPGEQKSVAGIITERDYLRKIIVQ 122 (139)
Q Consensus 48 ~~~~~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~-----~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~ 122 (139)
..++..-+++.+|+. .++++.++.|+.+++..+++ .....+.|+ |++++++|+++.++++.+
T Consensus 126 ~l~y~e~taG~~Mt~-------e~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVv--D~~~~L~Gvvsl~~Ll~a---- 192 (451)
T COG2239 126 LLSYPEDTAGRIMTT-------EFVTLPEDVTVDEALDRIRERAEDAETIYYLYVV--DEKGKLLGVVSLRDLLTA---- 192 (451)
T ss_pred hcCCChhhhhcccee-------eeEEeccCcCHHHHHHHHHHhcccccccceEEEE--CCccceEEEeeHHHHhcC----
Confidence 335567899999999 89999999999999999994 445778899 789999999999998642
Q ss_pred CCCCccCccccccccC
Q 032497 123 GRSSKSTKVGDIMTEE 138 (139)
Q Consensus 123 ~~~~~~~~v~~im~~~ 138 (139)
.++.++.++|.+.
T Consensus 193 ---~~~~~i~~im~~~ 205 (451)
T COG2239 193 ---EPDELLKDLMEDD 205 (451)
T ss_pred ---CcHhHHHHHhccc
Confidence 2467788888654
No 176
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=97.78 E-value=0.00011 Score=59.55 Aligned_cols=56 Identities=16% Similarity=0.315 Sum_probs=50.3
Q ss_pred cHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHH
Q 032497 55 TISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII 120 (139)
Q Consensus 55 ~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~ 120 (139)
.+.+.+.. ...++.+++++.+++..|.+++.. +||+ |++|+++|+||..++++++.
T Consensus 303 ~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~-~~v~--~~~~~~~g~i~~~~~~~~~~ 358 (363)
T TIGR01186 303 GLQDVLID-------DIYTVDAGTLLRETVRKVLKAGIK-VPVV--DEDQRLVGIVTRGSLVDALY 358 (363)
T ss_pred chhhhhcc-------CCceECCCCcHHHHHHHHHhCCCC-EEEE--CCCCcEEEEEEHHHHHHHHH
Confidence 46677766 678999999999999999999998 9999 78999999999999998874
No 177
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=97.73 E-value=0.00012 Score=48.29 Aligned_cols=48 Identities=15% Similarity=0.135 Sum_probs=42.7
Q ss_pred CcEEecCCCCHHHHHHHHHHcCCCEEEEEecCC---CCceEEEEeHHHHHHHH
Q 032497 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGE---QKSVAGIITERDYLRKI 119 (139)
Q Consensus 70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~---~~~lvGivt~~dll~~~ 119 (139)
....+.+++++.++.+.+.+++...+||+ ++ +++++|+|+.+|+.+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~--~~~~~~~~~~G~v~~~dl~~~~ 53 (105)
T cd04591 3 LVVLLPEGMTVEDLESLLSTTSHNGFPVV--DSTEESPRLVGYILRSQLVVAL 53 (105)
T ss_pred ceEEecccccHHHHHHHHHhCCCCCcceE--cCCCCCCEEEEEEeHHHHHHHH
Confidence 46788999999999999999989999999 56 68999999999997755
No 178
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.73 E-value=0.0002 Score=46.66 Aligned_cols=46 Identities=28% Similarity=0.417 Sum_probs=41.4
Q ss_pred CcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHH
Q 032497 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (139)
Q Consensus 70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~ 117 (139)
+..++.+++++.+++..|.+.+.+.+||+ +++++++|+++.+++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~~~~g~v~~~~l~~ 47 (106)
T cd04638 2 NVVYVTLPGTRDDVLELLKEYKVSGVPVV--KKSGELVGIITRKDLLR 47 (106)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCeEEEE--cCCCcEEEEEEHHHHHh
Confidence 57888999999999999999899999999 66799999999999864
No 179
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=97.60 E-value=0.0003 Score=57.73 Aligned_cols=59 Identities=20% Similarity=0.255 Sum_probs=50.8
Q ss_pred cHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcC
Q 032497 55 TISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQG 123 (139)
Q Consensus 55 ~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~ 123 (139)
.+.+.+.+ ...++.+++++.+++..+.+.... +||+ |++|+++|+||..++++++...|
T Consensus 338 ~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~-~~v~--~~~~~~~g~~~~~~~~~~~~~~~ 396 (400)
T PRK10070 338 GLDAALID-------APLAVDAQTPLSELLSHVGQAPCA-VPVV--DEDQQYVGIISKGMLLRALDREG 396 (400)
T ss_pred chhhhhcc-------CCceeCCCCCHHHHHHHHHhCCCc-EEEE--CCCCcEEEEEEHHHHHHHHHhcC
Confidence 46666666 688999999999999999997766 9999 78999999999999999886544
No 180
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=97.58 E-value=0.00021 Score=59.01 Aligned_cols=55 Identities=16% Similarity=0.343 Sum_probs=45.6
Q ss_pred cCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHH
Q 032497 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKI 119 (139)
Q Consensus 53 ~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~ 119 (139)
..++.++|.+ ++.++++++++.++++.|.+++ . ||| +++++++|+||.+|+++++
T Consensus 399 ~~~v~~im~~-------~~~~v~~~~~l~~a~~~~~~~~--~-~vV--~~~g~liGvvt~~dll~~l 453 (454)
T TIGR01137 399 DDAVSKVMSK-------KFIQIGEGEKLSDLSKFLEKNS--S-AIV--TEEGKPIGVVTKIDLLSFL 453 (454)
T ss_pred CCCHHHhcCC-------CCeEECCcCcHHHHHHHHHHCC--e-eEE--EECCEEEEEEEHHHHHHhh
Confidence 3579999987 7889999999999999998764 3 445 3568999999999998764
No 181
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=97.38 E-value=0.001 Score=54.37 Aligned_cols=52 Identities=23% Similarity=0.408 Sum_probs=48.3
Q ss_pred CcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcC
Q 032497 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQG 123 (139)
Q Consensus 70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~ 123 (139)
.+++|.++.|+.++++.|..++++.+.|| |++|.++|+||..|++..+....
T Consensus 311 ~vvtc~~~ssL~~vi~~lv~~~vHRl~VV--d~~~~l~GvvSLsDil~~l~~~p 362 (381)
T KOG1764|consen 311 GVVTCRPTSTLAEVIDKLVAHRVHRLWVV--DEDGVLVGVISLSDILSYLVLTP 362 (381)
T ss_pred ccEEEeecchHHHHHHHHHhcCceEEEEE--cCCCcEEEEeeHHHHHHHHHhCc
Confidence 57999999999999999999999999999 78899999999999999987653
No 182
>PRK11573 hypothetical protein; Provisional
Probab=97.31 E-value=0.00076 Score=55.56 Aligned_cols=51 Identities=16% Similarity=0.268 Sum_probs=46.8
Q ss_pred CcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHc
Q 032497 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQ 122 (139)
Q Consensus 70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~ 122 (139)
++.+++++.++.++++.|++++.+-..|+ |+-|...|+||..|++..++.+
T Consensus 263 ~~~~Vpe~~~l~~lL~~~~~~~~~~AiVv--DEyG~~~GiVTleDilEeivGe 313 (413)
T PRK11573 263 EIYFVPEGTPLSTQLVKFQRNKKKVGLVV--DEYGDIQGLVTVEDILEEIVGD 313 (413)
T ss_pred CCeEeCCCCcHHHHHHHHHhcCCeEEEEE--ecCCCeEEEeeHHHHHHHHhCC
Confidence 48899999999999999999999888899 7889999999999999998754
No 183
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=96.96 E-value=0.00046 Score=52.92 Aligned_cols=62 Identities=15% Similarity=0.297 Sum_probs=54.6
Q ss_pred cCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHH
Q 032497 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII 120 (139)
Q Consensus 53 ~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~ 120 (139)
..+|+|+|.+.. ...+++.+.++.+.+..+.+...+.+||+. ++...+.||+-.+||++.+.
T Consensus 66 dl~vrDiMIPRS-----QM~~l~~~~~l~~~l~~iiesaHSRfPVi~-edkD~v~GIL~AKDLL~~~~ 127 (293)
T COG4535 66 DLRVRDIMIPRS-----QMITLKRNQTLDECLDVIIESAHSRFPVIS-EDKDHVEGILLAKDLLPFMR 127 (293)
T ss_pred HhhHhhhcccHH-----HheeccccCCHHHHHHHHHHhccccCCccc-CCchhhhhhhhHHHHHHHhc
Confidence 578999998854 578899999999999999999999999995 35678999999999999763
No 184
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=96.92 E-value=0.0028 Score=52.37 Aligned_cols=50 Identities=20% Similarity=0.315 Sum_probs=46.5
Q ss_pred CcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHH
Q 032497 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIV 121 (139)
Q Consensus 70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~ 121 (139)
++..+++..++.++++.|++.+.+-..|+ |+-|...|+||..|++..++.
T Consensus 280 ~~~~Vpet~~~~~lL~~~r~~~~hmAiVv--DEyG~~~GlVTleDIiEeIvG 329 (429)
T COG1253 280 PPLFVPETLSLSDLLEEFREERTHMAIVV--DEYGGVEGLVTLEDIIEEIVG 329 (429)
T ss_pred CCeEecCCCcHHHHHHHHHHhCCeEEEEE--EcCCCeEEEeEHHHHHHHHhC
Confidence 68999999999999999999998888999 788999999999999999865
No 185
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=96.89 E-value=0.0015 Score=53.61 Aligned_cols=58 Identities=17% Similarity=0.289 Sum_probs=53.1
Q ss_pred ccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHH
Q 032497 52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRK 118 (139)
Q Consensus 52 ~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~ 118 (139)
....+.|+|++ ++++.+.+-++.++-+++.+++...+||| |++++++-++++.||.+.
T Consensus 169 ~~~~~~~vmt~-------~~~~~~~gi~l~~~neiL~~~kkGkl~iv--~~~gelva~~~rtDl~k~ 226 (503)
T KOG2550|consen 169 NSLLVSDVMTK-------NPVTGAQGITLKEANEILKKIKKGKLPVV--DDKGELVAMLSRTDLMKN 226 (503)
T ss_pred ccchhhhhccc-------ccccccccccHHHHHHHHHhhhcCCccee--ccCCceeeeeehhhhhhh
Confidence 45679999999 78889999999999999999999999999 789999999999999764
No 186
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=96.89 E-value=0.0012 Score=56.73 Aligned_cols=47 Identities=26% Similarity=0.247 Sum_probs=43.5
Q ss_pred CcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHH
Q 032497 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRK 118 (139)
Q Consensus 70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~ 118 (139)
.|.++.+++++..+..+++.-|++++.|+ +...+++|++|++|+.+.
T Consensus 699 sPytV~~~mSl~k~~~lFR~lGLRhLlVv--~~~~~~~gilTR~D~~~~ 745 (762)
T KOG0474|consen 699 SPYTVPETMSLAKAFILFRQLGLRHLLVV--PKTNRVVGILTRKDLARY 745 (762)
T ss_pred CCcccCcccchHHHHHHHHHhcceeEEEe--cCCCceeEEEehhhhhhH
Confidence 79999999999999999999999999999 677788999999999754
No 187
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=96.86 E-value=0.0013 Score=45.61 Aligned_cols=30 Identities=37% Similarity=0.394 Sum_probs=28.6
Q ss_pred CcEEecCCCCHHHHHHHHHHcCCCEEEEEe
Q 032497 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVK 99 (139)
Q Consensus 70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~ 99 (139)
++.++.+++++.+|++.|.+++++++||++
T Consensus 87 ~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd 116 (133)
T cd04592 87 GLWTCTPDTDLTTAKKLMEAKGVKQLPVVK 116 (133)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCcCCEec
Confidence 688999999999999999999999999995
No 188
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=96.80 E-value=0.0025 Score=52.10 Aligned_cols=50 Identities=24% Similarity=0.251 Sum_probs=45.0
Q ss_pred CcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHH
Q 032497 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIV 121 (139)
Q Consensus 70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~ 121 (139)
+...+..++++.+|++.|.+++++++||+ +..|..+|..+..|+......
T Consensus 238 ~i~~i~~~~~v~~al~~m~~~~is~lpvV--~~~g~~v~~~s~~Dv~~l~~~ 287 (381)
T KOG1764|consen 238 NIASISEDTPVIEALKIMSERRISALPVV--DENGKKVGNYSRFDVIHLARE 287 (381)
T ss_pred hheeecCCCcHHHHHHHHHhcCcCcceEE--cCCCceecceehhhhhhhhhc
Confidence 57889999999999999999999999999 788888999999999776543
No 189
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=96.76 E-value=0.0011 Score=53.82 Aligned_cols=67 Identities=19% Similarity=0.336 Sum_probs=57.8
Q ss_pred CCccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHc
Q 032497 50 GFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQ 122 (139)
Q Consensus 50 ~~~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~ 122 (139)
.+..++|.|+|.+.. +...++.+++..+.++.+.+..+..+|+.. |+-+.++|++..+|+++++...
T Consensus 196 DLe~~tV~DIMvpR~-----~i~~id~d~~~e~iv~ql~~s~HtRiplyr-~~~DnIiGvlh~r~llr~l~e~ 262 (423)
T COG4536 196 DLENLTVSDIMVPRN-----EIIGIDIDDPWEEIVRQLLHSPHTRIPLYR-DDLDNIIGVLHVRDLLRLLNEK 262 (423)
T ss_pred ccccceeeeeecccc-----ceeeecCCCCHHHHHHHHhhCCCCceeeec-CChhHhhhhhhHHHHHHHhhcc
Confidence 446799999999865 688899999999999999999999999996 4445699999999999987543
No 190
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=96.46 E-value=0.0027 Score=52.12 Aligned_cols=63 Identities=25% Similarity=0.380 Sum_probs=50.8
Q ss_pred CcEEecCCCCHHHHHHHHHHcCCCEEEEEecC-CCCceEEEEeHHHHHHHHHHcCCCCccCccccccccC
Q 032497 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPG-EQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEE 138 (139)
Q Consensus 70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d-~~~~lvGivt~~dll~~~~~~~~~~~~~~v~~im~~~ 138 (139)
+|.++.|+.++.++++.-..+++..+||.+.+ -..+|+|+||-+|+ ..+ + + ...++.++|++.
T Consensus 117 ~p~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g~~~~KLvG~vtsrdi-~f~--~--~-~~~~~~~vmt~~ 180 (503)
T KOG2550|consen 117 NPIVISPTTTVGEVKEAKEKHGFSGIPVTEDGKRGSKLVGIITSRDI-QFL--E--D-NSLLVSDVMTKN 180 (503)
T ss_pred CCcccCCcccchhhhhhcccccccccccccCCcccceeEEEEehhhh-hhh--h--c-ccchhhhhcccc
Confidence 68899999999999999999999999999311 24689999999998 444 2 1 357788888764
No 191
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=96.37 E-value=0.012 Score=46.03 Aligned_cols=80 Identities=16% Similarity=0.095 Sum_probs=54.3
Q ss_pred cchhhhhhcccchhhhhhcCCccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEE
Q 032497 31 RPVVSSRFESVSSARMEEHGFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGII 110 (139)
Q Consensus 31 ~~d~~~~~~~~~~~~~~~~~~~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGiv 110 (139)
..||+..|++...+..+ .+...++.+.|.+.... +--.+.....-.+++..+...+...+||+ |++|+++|.+
T Consensus 228 an~FV~~f~g~~~~~~~--~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ls~~~~~~~~~~~Vv--d~~g~~~G~v 300 (309)
T COG1125 228 ANDFVEDFFGESERGLR--LLSLVSVADAVRRGEPA---DGEPLLEGFVDRDALSDFLARGRSVLPVV--DEDGRPLGTV 300 (309)
T ss_pred cHHHHHHHhcccccccc--ccchhhHHHhhcccccc---cCCccccchhhHHHHHHHHhcCCceeEEE--CCCCcEeeEE
Confidence 44666678776433221 22346788887763211 12233445556678888888999999999 8999999999
Q ss_pred eHHHHHH
Q 032497 111 TERDYLR 117 (139)
Q Consensus 111 t~~dll~ 117 (139)
|..+++.
T Consensus 301 t~~~l~~ 307 (309)
T COG1125 301 TRADLLD 307 (309)
T ss_pred EHHHHhh
Confidence 9999865
No 192
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=96.17 E-value=0.03 Score=45.65 Aligned_cols=51 Identities=18% Similarity=0.292 Sum_probs=45.8
Q ss_pred CcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHc
Q 032497 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQ 122 (139)
Q Consensus 70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~ 122 (139)
.|.++++++++.+-+..|.+++-+--.|| |+=|.+.|+||..|++..+...
T Consensus 276 epyFVPe~Tpl~~QL~~F~~~k~hialVV--DEYG~i~GLVTLEDIlEEIVGd 326 (423)
T COG4536 276 EPYFVPEGTPLSDQLVAFQRNKKHIALVV--DEYGDIQGLVTLEDILEEIVGD 326 (423)
T ss_pred CCeecCCCCcHHHHHHHHHHhcceEEEEE--eccCcEEeeeeHHHHHHHHhcc
Confidence 48899999999999999999988888899 7899999999999999988643
No 193
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=95.94 E-value=0.023 Score=46.46 Aligned_cols=47 Identities=13% Similarity=0.250 Sum_probs=40.4
Q ss_pred CcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHH
Q 032497 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII 120 (139)
Q Consensus 70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~ 120 (139)
+..++++++++.+++..+.+.+. -++|+ |+ |+++|+|+..+++.++.
T Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~-~~~v~--~~-~~~~g~~~~~~~~~~~~ 380 (382)
T TIGR03415 334 APTVINPDTLMRDVLAARHRTGG-AILLV--EN-GRIVGVIGDDNIYHALL 380 (382)
T ss_pred cCcccCCCCcHHHHHHHHhcCCC-CeEEe--eC-CeEEEEEeHHHHHHHHh
Confidence 57889999999999998888765 47788 44 99999999999998763
No 194
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=94.93 E-value=0.056 Score=46.66 Aligned_cols=57 Identities=23% Similarity=0.304 Sum_probs=50.7
Q ss_pred cCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHH
Q 032497 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKI 119 (139)
Q Consensus 53 ~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~ 119 (139)
....+++|.. .|.++....+..-.++++++-++.++.|. .+|++.|+||.+|+++..
T Consensus 638 ~~~lk~il~~-------tp~tv~d~tp~~~v~~~F~~lg~~~~~v~---~~G~l~Giitkkd~l~~~ 694 (696)
T KOG0475|consen 638 RLDLKDILDM-------TPFTVTDLTPMETVVDLFRKLGLRQILVT---KNGILLGIITKKDCLRHT 694 (696)
T ss_pred CcCceeeccC-------CcccccccCcHHHHHHHHHhhCceEEEEc---cCCeeEeeeehHHHHHhh
Confidence 3567788877 89999999999999999999999999996 899999999999998753
No 195
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=94.83 E-value=0.027 Score=49.60 Aligned_cols=62 Identities=13% Similarity=0.220 Sum_probs=54.0
Q ss_pred CccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHH
Q 032497 51 FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKI 119 (139)
Q Consensus 51 ~~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~ 119 (139)
...+.|.++|.+ ++.++..++|..|..+.+....+..+|+|++-++.-++|.|.++.|...+
T Consensus 585 ~h~v~VE~iMV~-------dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s~esmiLlGSV~R~~L~~ll 646 (931)
T KOG0476|consen 585 VHTVKVEHIMVT-------DVKYITKDTTYRELREALQTTTLRSFPLVESKESMILLGSVARRYLTALL 646 (931)
T ss_pred eeEEEeeeeccc-------cceeeeccCcHHHHHHHHHhCccceeccccCcccceeeehhHHHHHHHHH
Confidence 346889999999 89999999999999999998779999999644567899999999987655
No 196
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=94.18 E-value=0.25 Score=38.20 Aligned_cols=58 Identities=21% Similarity=0.310 Sum_probs=50.2
Q ss_pred CcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHH
Q 032497 54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIV 121 (139)
Q Consensus 54 ~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~ 121 (139)
..+.++..+ .+.++++-.+.-.++-++.+...-..|+ |+=|-+-|.||..|++..+..
T Consensus 133 F~i~~lLRP--------av~VPESKrvd~lLkeFR~~RnHMAIVi--DEfGgVsGLVTIEDiLEqIVG 190 (293)
T COG4535 133 FDIKELLRP--------AVVVPESKRVDRLLKEFRSQRNHMAIVI--DEFGGVSGLVTIEDILEQIVG 190 (293)
T ss_pred ccHHHhccc--------ceecccchhHHHHHHHHHhhcCceEEEE--eccCCeeeeEEHHHHHHHHhc
Confidence 457777665 8899999999999999999888888899 788999999999999988764
No 197
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=94.15 E-value=0.028 Score=48.59 Aligned_cols=61 Identities=15% Similarity=0.192 Sum_probs=52.0
Q ss_pred ccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCC---CceEEEEeHHHHHHHH
Q 032497 52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQ---KSVAGIITERDYLRKI 119 (139)
Q Consensus 52 ~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~---~~lvGivt~~dll~~~ 119 (139)
...+++|+|+. +.++++.-+.+...++.++....+.+||+++.+. +++.|+|-+..++..+
T Consensus 580 r~L~a~ev~~~-------pvi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~~~~~~~l~GlILRshl~vlL 643 (762)
T KOG0474|consen 580 RNLTAGEVMSK-------PVICLNRVEKVAVIVDVLKSTNHNGFPVVDEPPSNEAGRLHGLILRSHLLVLL 643 (762)
T ss_pred hhhhHhhhccC-------CeEEEechhhHHHHHHHHHhcCcCCCccccCCCCccchhhhHHHHHHHHHHHH
Confidence 35789999999 8999999999999999999999999999953222 5899999998886543
No 198
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=93.52 E-value=0.28 Score=40.43 Aligned_cols=60 Identities=12% Similarity=0.085 Sum_probs=46.5
Q ss_pred CcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHH
Q 032497 54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKI 119 (139)
Q Consensus 54 ~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~ 119 (139)
.++.++|..... ......++.+..+++..|...+.+.+.|+ |++++++|+++.+++.+..
T Consensus 274 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~~~~ 333 (400)
T PRK10070 274 FSAKDIARRTPN----GLIRKTPGFGPRSALKLLQDEDREYGYVI--ERGNKFVGAVSIDSLKTAL 333 (400)
T ss_pred cchhhhhhcCcc----cccccCCCCCHHHHHHHHHhcCCceEEEE--cCCCcEEEEEeHHHHHhhh
Confidence 467777754110 11234577889999999999999999999 7899999999999997543
No 199
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=93.09 E-value=0.27 Score=39.72 Aligned_cols=48 Identities=21% Similarity=0.304 Sum_probs=40.3
Q ss_pred CcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHH
Q 032497 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII 120 (139)
Q Consensus 70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~ 120 (139)
++..+.+++++.+.+....+.+ ..++|+ |++++++|++++..++.++.
T Consensus 336 ~~~~v~~d~~~~~~~~~~~~~~-~p~aVv--de~~r~vG~i~~~~vl~aL~ 383 (386)
T COG4175 336 DVLTVDADTPLSEILARIRQAP-CPVAVV--DEDGRYVGIISRGELLEALA 383 (386)
T ss_pred cccccCccchHHHHHHHHhcCC-CceeEE--cCCCcEEEEecHHHHHHHHh
Confidence 5678888998888888777665 468888 79999999999999998874
No 200
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=92.02 E-value=0.94 Score=36.83 Aligned_cols=48 Identities=21% Similarity=0.233 Sum_probs=41.0
Q ss_pred CcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHH
Q 032497 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKI 119 (139)
Q Consensus 70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~ 119 (139)
......++.+..++++.|...+.+.+.|+ |+++++.|.++..++.+..
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~~~~ 298 (363)
T TIGR01186 251 GPITKTADKGPRSALQLMRDERVDSLYVV--DRQNKLVGVVDVESIKQAR 298 (363)
T ss_pred cceeecCCCCHHHHHHHHHhcCCceEEEE--cCCCCEEEEEeHHHHHHHh
Confidence 34556778899999999999999999999 7889999999999987644
No 201
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=89.75 E-value=0.74 Score=40.01 Aligned_cols=50 Identities=18% Similarity=0.276 Sum_probs=42.3
Q ss_pred cEEec-CCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHH
Q 032497 71 WLWCT-TDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII 120 (139)
Q Consensus 71 ~~~v~-~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~ 120 (139)
..++. .++++.+....|.+..++.+||+-+++..+++|+|.++|+..++.
T Consensus 558 L~~i~~~s~tl~~le~~~~~t~~sgfpvvl~~~sq~lvGfv~rr~l~~~i~ 608 (696)
T KOG0475|consen 558 LIVITQDSMTLEDLESLMEDTDFSGFPVVLSEDSQRLVGFVLRRNLFLAIL 608 (696)
T ss_pred heeccccceeHHHHHHHHhhcccCCceEEEccccceeEEEEchHHHHHHHh
Confidence 44554 449999999999999999999997667789999999999988775
No 202
>PF08220 HTH_DeoR: DeoR-like helix-turn-helix domain; InterPro: IPR001034 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism. This family of prokaryotic regulators is named after the Escherichia coli protein DeoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerisation domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular
Probab=88.09 E-value=0.34 Score=28.70 Aligned_cols=35 Identities=9% Similarity=0.190 Sum_probs=32.2
Q ss_pred hhHHHHHhhcCCCchHHHHhhhCCccccccchhhh
Q 032497 2 QGAIQSFLSHGNIVKSAVLQRIRLVNPMLRPVVSS 36 (139)
Q Consensus 2 ~~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~d~~~ 36 (139)
+.|++.++.++.++-..+++.++++..+++.|+..
T Consensus 3 ~~Il~~l~~~~~~s~~ela~~~~VS~~TiRRDl~~ 37 (57)
T PF08220_consen 3 QQILELLKEKGKVSVKELAEEFGVSEMTIRRDLNK 37 (57)
T ss_pred HHHHHHHHHcCCEEHHHHHHHHCcCHHHHHHHHHH
Confidence 57999999999999999999999999999988843
No 203
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=82.80 E-value=2.4 Score=37.82 Aligned_cols=48 Identities=8% Similarity=0.140 Sum_probs=44.0
Q ss_pred CcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHH
Q 032497 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII 120 (139)
Q Consensus 70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~ 120 (139)
.|..+-+.+++.++-.++.--|+++.-|. +-|+++|+|..++|.+++.
T Consensus 811 aPfQLve~TSL~K~HtLFSLLgL~~AYVT---~~GrLvGVValkELRkAie 858 (931)
T KOG0476|consen 811 APFQLVEGTSLYKVHTLFSLLGLNHAYVT---SCGRLVGVVALKELRKAIE 858 (931)
T ss_pred CceeeeccchHHHHHHHHHHhccchhhhc---ccCcEEEEEEHHHHHHHHH
Confidence 57888999999999999999999999998 6899999999999988874
No 204
>PF08279 HTH_11: HTH domain; InterPro: IPR013196 Winged helix DNA-binding proteins share a related winged helix-turn-helix DNA-binding motif, where the "wings", or loops, are small beta-sheets. The winged helix motif consists of two wings (W1, W2), three alpha helices (H1, H2, H3) and three beta-sheets (S1, S2, S3) arranged in the order H1-S1-H2-H3-S2-W1-S3-W2 []. The DNA-recognition helix makes sequence-specific DNA contacts with the major groove of DNA, while the wings make different DNA contacts, often with the minor groove or the backbone of DNA. Several winged-helix proteins display an exposed patch of hydrophobic residues thought to mediate protein-protein interactions. This entry represents a subset of the winged helix domain superfamily which is predominantly found in bacterial proteins, though there are also some archaeal and eukaryotic examples. This domain is commonly found in the biotin (vitamin H) repressor protein BirA which regulates transcription of the biotin operon []. It is also found in other proteins including regulators of amino acid biosynthsis such as LysM [], and regulators of carbohydrate metabolisms such as LicR and FrvR [, ].; PDB: 1HXD_B 2EWN_B 1BIA_A 1BIB_A 1J5Y_A 3V7S_A 3V7C_A 3RKW_A 3RIR_A 3RKX_A ....
Probab=81.36 E-value=0.95 Score=26.07 Aligned_cols=33 Identities=9% Similarity=0.172 Sum_probs=26.9
Q ss_pred hhHHHHH-hhcCCCchHHHHhhhCCccccccchh
Q 032497 2 QGAIQSF-LSHGNIVKSAVLQRIRLVNPMLRPVV 34 (139)
Q Consensus 2 ~~~~~~~-~~~~~i~~~~v~~~~~~~~~~~~~d~ 34 (139)
+.|++.+ ..+++++...+++.++++..+++.++
T Consensus 3 ~~il~~L~~~~~~it~~eLa~~l~vS~rTi~~~i 36 (55)
T PF08279_consen 3 KQILKLLLESKEPITAKELAEELGVSRRTIRRDI 36 (55)
T ss_dssp HHHHHHHHHTTTSBEHHHHHHHCTS-HHHHHHHH
T ss_pred HHHHHHHHHcCCCcCHHHHHHHhCCCHHHHHHHH
Confidence 4688888 66667999999999999998887666
No 205
>PF05198 IF3_N: Translation initiation factor IF-3, N-terminal domain; InterPro: IPR019814 Initiation factor 3 (IF-3) (gene infC) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-3 is thought to function as a fidelity factor during the assembly of the ternary initiation complex which consist of the 30S ribosomal subunit, the initiator tRNA and the messenger RNA. IF-3 is a basic protein that binds to the 30S ribosomal subunit []. The chloroplast initiation factor IF-3(chl) is a protein that enhances the poly(A,U,G)-dependent binding of the initiator tRNA to chloroplast ribosomal 30s subunits in which the central section is evolutionary related to the sequence of bacterial IF-3 []. ; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 1TIF_A.
Probab=71.84 E-value=11 Score=23.70 Aligned_cols=30 Identities=20% Similarity=0.337 Sum_probs=18.7
Q ss_pred CCEEEEEecCCCCceEEEEeHHHHHHHHHHcC
Q 032497 92 VGALVVVKPGEQKSVAGIITERDYLRKIIVQG 123 (139)
Q Consensus 92 ~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~ 123 (139)
...+-|+ |++|..+|+++..+-++..-..+
T Consensus 12 ~~~VrlI--~~~g~~lGv~~~~eAl~~A~~~~ 41 (76)
T PF05198_consen 12 APEVRLI--DEDGEQLGVMSLREALRLAKEKG 41 (76)
T ss_dssp -SEEEEE---TTS-EEEEEEHHHHHHHHHHTT
T ss_pred CCEEEEE--CCCCcEeceEEHHHHHHHHHHcC
Confidence 3456667 67788888888888776554444
No 206
>COG1349 GlpR Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]
Probab=70.79 E-value=2.6 Score=32.46 Aligned_cols=35 Identities=9% Similarity=0.167 Sum_probs=33.2
Q ss_pred hhHHHHHhhcCCCchHHHHhhhCCccccccchhhh
Q 032497 2 QGAIQSFLSHGNIVKSAVLQRIRLVNPMLRPVVSS 36 (139)
Q Consensus 2 ~~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~d~~~ 36 (139)
+.|++++..++.++-..++++++++..++|.|+..
T Consensus 8 ~~Il~~l~~~g~v~v~eLa~~~~VS~~TIRRDL~~ 42 (253)
T COG1349 8 QKILELLKEKGKVSVEELAELFGVSEMTIRRDLNE 42 (253)
T ss_pred HHHHHHHHHcCcEEHHHHHHHhCCCHHHHHHhHHH
Confidence 57999999999999999999999999999999966
No 207
>PRK10681 DNA-binding transcriptional repressor DeoR; Provisional
Probab=65.60 E-value=4.4 Score=31.07 Aligned_cols=35 Identities=6% Similarity=0.067 Sum_probs=32.7
Q ss_pred hhHHHHHhhcCCCchHHHHhhhCCccccccchhhh
Q 032497 2 QGAIQSFLSHGNIVKSAVLQRIRLVNPMLRPVVSS 36 (139)
Q Consensus 2 ~~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~d~~~ 36 (139)
+.|++++..++.++-..+++.++++..++|.|+..
T Consensus 10 ~~I~~~l~~~~~v~v~eLa~~~~VS~~TIRRDL~~ 44 (252)
T PRK10681 10 GQLLQALKRSDKLHLKDAAALLGVSEMTIRRDLNA 44 (252)
T ss_pred HHHHHHHHHcCCCcHHHHHHHhCCCHHHHHHHHHH
Confidence 57999999999999999999999999999999865
No 208
>COG1476 Predicted transcriptional regulators [Transcription]
Probab=63.98 E-value=5.3 Score=24.79 Aligned_cols=31 Identities=3% Similarity=0.161 Sum_probs=26.5
Q ss_pred ChhHHHHHhhcCCCchHHHHhhhCCcccccc
Q 032497 1 MQGAIQSFLSHGNIVKSAVLQRIRLVNPMLR 31 (139)
Q Consensus 1 ~~~~~~~~~~~~~i~~~~v~~~~~~~~~~~~ 31 (139)
|+.-++.+|....+++.++|..+++++-++.
T Consensus 2 mknk~k~~R~~~~ltQ~elA~~vgVsRQTi~ 32 (68)
T COG1476 2 MKNKLKELRAELGLTQEELAKLVGVSRQTII 32 (68)
T ss_pred hhhHHHHHHHHhCcCHHHHHHHcCcCHHHHH
Confidence 4556888999999999999999999887653
No 209
>PF13412 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 1I1G_B 2IA0_B 3I4P_A 2GQQ_A 2L4A_A 2CFX_B 2DBB_B 2EFO_A 2EFQ_A 2PN6_A ....
Probab=57.01 E-value=9.3 Score=21.17 Aligned_cols=30 Identities=3% Similarity=0.196 Sum_probs=24.2
Q ss_pred hhHHHHHhhcCCCchHHHHhhhCCcccccc
Q 032497 2 QGAIQSFLSHGNIVKSAVLQRIRLVNPMLR 31 (139)
Q Consensus 2 ~~~~~~~~~~~~i~~~~v~~~~~~~~~~~~ 31 (139)
..|+..+..++.++...+++.++++....+
T Consensus 6 ~~Il~~l~~~~~~t~~ela~~~~is~~tv~ 35 (48)
T PF13412_consen 6 RKILNYLRENPRITQKELAEKLGISRSTVN 35 (48)
T ss_dssp HHHHHHHHHCTTS-HHHHHHHHTS-HHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHhCCCHHHHH
Confidence 468899999999999999999999777554
No 210
>PRK10434 srlR DNA-bindng transcriptional repressor SrlR; Provisional
Probab=52.28 E-value=8.5 Score=29.58 Aligned_cols=35 Identities=9% Similarity=0.115 Sum_probs=32.6
Q ss_pred hhHHHHHhhcCCCchHHHHhhhCCccccccchhhh
Q 032497 2 QGAIQSFLSHGNIVKSAVLQRIRLVNPMLRPVVSS 36 (139)
Q Consensus 2 ~~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~d~~~ 36 (139)
+.|++.+..++.++-..+++.++++..++|.|+..
T Consensus 8 ~~Il~~L~~~~~v~v~eLa~~l~VS~~TIRRDL~~ 42 (256)
T PRK10434 8 AAILEYLQKQGKTSVEELAQYFDTTGTTIRKDLVI 42 (256)
T ss_pred HHHHHHHHHcCCEEHHHHHHHHCCCHHHHHHHHHH
Confidence 57999999999999999999999999999999865
No 211
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=49.12 E-value=28 Score=22.84 Aligned_cols=63 Identities=11% Similarity=0.305 Sum_probs=40.4
Q ss_pred hcCCccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHc---CCCEEEEEecCC-CCce----EEEEeHHHHHHHH
Q 032497 48 EHGFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQH---NVGALVVVKPGE-QKSV----AGIITERDYLRKI 119 (139)
Q Consensus 48 ~~~~~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~---~~~~lpVv~~d~-~~~l----vGivt~~dll~~~ 119 (139)
..-+....|.+.+.. +++.+..+.+=.++.++.... ++..+.++ +. +|++ .|.++.++++..+
T Consensus 37 ~~vl~~~~v~~~l~~-------~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i--~~~~g~~l~~~~G~~~~~~f~~~L 107 (114)
T cd02958 37 RDLWSNESVKEFIRE-------NFIFWQCDIDSSEGQRFLQSYKVDKYPHIAII--DPRTGEVLKVWSGNITPEDLLSQL 107 (114)
T ss_pred HHHcCCHHHHHHHHh-------CEEEEEecCCCccHHHHHHHhCccCCCeEEEE--eCccCcEeEEEcCCCCHHHHHHHH
Confidence 344556778888887 676666555434555555544 45556667 45 5644 5889999887765
No 212
>PF05225 HTH_psq: helix-turn-helix, Psq domain; InterPro: IPR007889 This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster []. In pipsqueak this domain binds to GAGA sequence []. The pipsqueak family, which includes proteins from fungi, sea urchins, nematodes, insects, and vertebrates appear to be proteins essential for sequence-specific targeting of a polycomb group protein complex [].; GO: 0003677 DNA binding; PDB: 2COB_A.
Probab=49.03 E-value=9.2 Score=21.44 Aligned_cols=30 Identities=17% Similarity=0.213 Sum_probs=22.9
Q ss_pred ChhHHHHHhhcCCCchHHHHhhhCCcccccc
Q 032497 1 MQGAIQSFLSHGNIVKSAVLQRIRLVNPMLR 31 (139)
Q Consensus 1 ~~~~~~~~~~~~~i~~~~v~~~~~~~~~~~~ 31 (139)
|+.+|+-++.++ .+-...+..+++++.+++
T Consensus 5 l~~Ai~~v~~g~-~S~r~AA~~ygVp~sTL~ 34 (45)
T PF05225_consen 5 LQKAIEAVKNGK-MSIRKAAKKYGVPRSTLR 34 (45)
T ss_dssp HHHHHHHHHTTS-S-HHHHHHHHT--HHHHH
T ss_pred HHHHHHHHHhCC-CCHHHHHHHHCcCHHHHH
Confidence 578899999777 999999999999888766
No 213
>PRK04424 fatty acid biosynthesis transcriptional regulator; Provisional
Probab=48.65 E-value=11 Score=27.62 Aligned_cols=35 Identities=6% Similarity=-0.003 Sum_probs=32.6
Q ss_pred hhHHHHHhhcCCCchHHHHhhhCCccccccchhhh
Q 032497 2 QGAIQSFLSHGNIVKSAVLQRIRLVNPMLRPVVSS 36 (139)
Q Consensus 2 ~~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~d~~~ 36 (139)
+.|++.+..++.++-..+++.++++..++|.|+..
T Consensus 10 ~~Il~~l~~~~~~~~~~La~~~~vS~~TiRRDl~~ 44 (185)
T PRK04424 10 KALQELIEENPFITDEELAEKFGVSIQTIRLDRME 44 (185)
T ss_pred HHHHHHHHHCCCEEHHHHHHHHCcCHHHHHHHHHH
Confidence 57899999999999999999999999999999865
No 214
>smart00550 Zalpha Z-DNA-binding domain in adenosine deaminases. Helix-turn-helix-containing domain. Also known as Zab.
Probab=48.34 E-value=17 Score=22.01 Aligned_cols=33 Identities=9% Similarity=0.171 Sum_probs=27.4
Q ss_pred hhHHHHHhhcCC--CchHHHHhhhCCccccccchh
Q 032497 2 QGAIQSFLSHGN--IVKSAVLQRIRLVNPMLRPVV 34 (139)
Q Consensus 2 ~~~~~~~~~~~~--i~~~~v~~~~~~~~~~~~~d~ 34 (139)
+.|++.++..++ ++...++..++++....+.-+
T Consensus 9 ~~IL~~L~~~g~~~~ta~eLa~~lgl~~~~v~r~L 43 (68)
T smart00550 9 EKILEFLENSGDETSTALQLAKNLGLPKKEVNRVL 43 (68)
T ss_pred HHHHHHHHHCCCCCcCHHHHHHHHCCCHHHHHHHH
Confidence 468899999888 999999999999887665444
No 215
>COG0290 InfC Translation initiation factor 3 (IF-3) [Translation, ribosomal structure and biogenesis]
Probab=47.36 E-value=55 Score=24.07 Aligned_cols=31 Identities=19% Similarity=0.304 Sum_probs=22.0
Q ss_pred CCEEEEEecCCCCceEEEEeHHHHHHHHHHcCC
Q 032497 92 VGALVVVKPGEQKSVAGIITERDYLRKIIVQGR 124 (139)
Q Consensus 92 ~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~ 124 (139)
..-+-++ |.+|.-+||++..+-+......+.
T Consensus 18 ~~evrlI--g~~GeqlGiv~~~eAL~lA~e~~L 48 (176)
T COG0290 18 AREVRLI--GEDGEQLGIVSIEEALKLAEEAGL 48 (176)
T ss_pred ccEEEEE--CCCCcEEcceeHHHHHHHHHHcCC
Confidence 4456667 788888999999988776544443
No 216
>KOG2118 consensus Predicted membrane protein, contains two CBS domains [Function unknown]
Probab=46.75 E-value=11 Score=32.07 Aligned_cols=57 Identities=7% Similarity=0.233 Sum_probs=39.5
Q ss_pred ccCcHHHHhhhcCCCCCCCcEEecCCCCHH-HHHHHHHHcCCCEEEEEecCCCCceEEEEeHH
Q 032497 52 ESTTISDILKAKGKGADGSWLWCTTDDTVY-DAVKSMTQHNVGALVVVKPGEQKSVAGIITER 113 (139)
Q Consensus 52 ~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~-~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~ 113 (139)
....++++|++-. ++..+..+..+. +.+....++|++.+||.+.+....+.|.+...
T Consensus 202 ~ek~~~evmtpi~-----~~f~l~~n~~l~~~~~~~i~~~g~sripv~~~~~~~~i~~~L~~~ 259 (498)
T KOG2118|consen 202 TEKLVGEVMTPIE-----DVFALDANTKLDRETVGEIVKHGYSRIPVYEQEPKNKIGGLLVMN 259 (498)
T ss_pred HHHHHHHhccchh-----hheeeccccccchHHHhhHhhcCcceeeeccCcccchhhHHHHhh
Confidence 3577999999843 677778888875 66677779999999999532233444444333
No 217
>CHL00199 infC translation initiation factor 3; Provisional
Probab=46.31 E-value=38 Score=25.08 Aligned_cols=37 Identities=19% Similarity=0.216 Sum_probs=22.1
Q ss_pred CCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHH
Q 032497 78 DTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDY 115 (139)
Q Consensus 78 ~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dl 115 (139)
.+..+|++...+.+.+-+.|- ++....++=|++...+
T Consensus 40 ~~~~eAl~~A~~~~lDLVeVs-~~a~PPVCKImdygK~ 76 (182)
T CHL00199 40 FTSEQAIQLAANQGLDLVLVS-EKSDPPVCRIIDYGKY 76 (182)
T ss_pred eeHHHHHHHHHHcCCCEEEEC-CCCCCCeEEEeehHHH
Confidence 456677777777776665553 2234466666666554
No 218
>PRK09802 DNA-binding transcriptional regulator AgaR; Provisional
Probab=45.13 E-value=13 Score=28.80 Aligned_cols=35 Identities=11% Similarity=0.134 Sum_probs=32.2
Q ss_pred hhHHHHHhhcCCCchHHHHhhhCCccccccchhhh
Q 032497 2 QGAIQSFLSHGNIVKSAVLQRIRLVNPMLRPVVSS 36 (139)
Q Consensus 2 ~~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~d~~~ 36 (139)
+.|+++++.++.++-..+++.++++..++|.|+..
T Consensus 20 ~~Il~~L~~~~~vtv~eLa~~l~VS~~TIRRDL~~ 54 (269)
T PRK09802 20 EQIIQRLRQQGSVQVNDLSALYGVSTVTIRNDLAF 54 (269)
T ss_pred HHHHHHHHHcCCEeHHHHHHHHCCCHHHHHHHHHH
Confidence 47899999999999999999999999999999865
No 219
>PRK10411 DNA-binding transcriptional activator FucR; Provisional
Probab=44.89 E-value=16 Score=27.91 Aligned_cols=35 Identities=14% Similarity=0.349 Sum_probs=31.9
Q ss_pred hhHHHHHhhcCCCchHHHHhhhCCccccccchhhh
Q 032497 2 QGAIQSFLSHGNIVKSAVLQRIRLVNPMLRPVVSS 36 (139)
Q Consensus 2 ~~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~d~~~ 36 (139)
+.|++.++.++.++...+++.++++..++|.|+..
T Consensus 7 ~~Il~~l~~~~~~~~~eLa~~l~VS~~TiRRdL~~ 41 (240)
T PRK10411 7 QAIVDLLLNHTSLTTEALAEQLNVSKETIRRDLNE 41 (240)
T ss_pred HHHHHHHHHcCCCcHHHHHHHHCcCHHHHHHHHHH
Confidence 57999999999999999999999999998888864
No 220
>TIGR02844 spore_III_D sporulation transcriptional regulator SpoIIID. Members of this protein are the transcriptional regulator SpoIIID, or stage III sporulation protein D. It is present in genomes if and only if the species is capable of endospore formation as occurs in the model species Bacillus subtilis. SpoIIID is a DNA binding protein that, in B. subtilis, downregulates many genes but also turns on ten genes.
Probab=44.62 E-value=20 Score=22.89 Aligned_cols=34 Identities=3% Similarity=-0.040 Sum_probs=29.7
Q ss_pred hhHHHHHhhcCCCchHHHHhhhCCccccccchhhh
Q 032497 2 QGAIQSFLSHGNIVKSAVLQRIRLVNPMLRPVVSS 36 (139)
Q Consensus 2 ~~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~d~~~ 36 (139)
.+|.+++.. +.++=..|++..+++..+.+.++..
T Consensus 9 ~~I~e~l~~-~~~ti~dvA~~~gvS~~TVsr~L~~ 42 (80)
T TIGR02844 9 LEIGKYIVE-TKATVRETAKVFGVSKSTVHKDVTE 42 (80)
T ss_pred HHHHHHHHH-CCCCHHHHHHHhCCCHHHHHHHhcC
Confidence 468899999 9999999999999999988877743
No 221
>PF03948 Ribosomal_L9_C: Ribosomal protein L9, C-terminal domain; InterPro: IPR020069 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L9 is one of the proteins from the large ribosomal subunit. In Escherichia coli, L9 is known to bind directly to the 23S rRNA. It belongs to a family of ribosomal proteins grouped on the basis of sequence similarities [, ]. The crystal structure of Bacillus stearothermophilus L9 shows the 149-residue protein comprises two globular domains connected by a rigid linker []. Each domain contains an rRNA binding site, and the protein functions as a structural protein in the large subunit of the ribosome. The C-terminal domain consists of two loops, an alpha-helix and a three-stranded mixed parallel, anti-parallel beta-sheet packed against the central alpha-helix. The long central alpha-helix is exposed to solvent in the middle and participates in the hydrophobic cores of the two domains at both ends. ; PDB: 3D5B_I 3PYV_H 3F1H_I 3PYR_H 3MRZ_H 1VSP_G 3MS1_H 1VSA_G 3PYT_H 2WH4_I ....
Probab=44.21 E-value=20 Score=23.02 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=19.5
Q ss_pred CCCCceEEEEeHHHHHHHHHHc
Q 032497 101 GEQKSVAGIITERDYLRKIIVQ 122 (139)
Q Consensus 101 d~~~~lvGivt~~dll~~~~~~ 122 (139)
+++|++.|-||..|+..++...
T Consensus 23 g~~gklfGSVt~~dIa~~l~~~ 44 (87)
T PF03948_consen 23 GENGKLFGSVTSKDIAKALKEQ 44 (87)
T ss_dssp SSCSSBSSEBSHHHHHHHHHHC
T ss_pred cCCcceecCcCHHHHHHHHHHh
Confidence 5689999999999999988766
No 222
>PF14827 Cache_3: Sensory domain of two-component sensor kinase; PDB: 1OJG_A 3BY8_A 1P0Z_I 2V9A_A 2J80_B.
Probab=43.45 E-value=30 Score=22.93 Aligned_cols=17 Identities=18% Similarity=0.241 Sum_probs=12.5
Q ss_pred EEEEEecCCCCceEEEEeH
Q 032497 94 ALVVVKPGEQKSVAGIITE 112 (139)
Q Consensus 94 ~lpVv~~d~~~~lvGivt~ 112 (139)
..||. |.+|+++|+|+.
T Consensus 93 ~~PV~--d~~g~viG~V~V 109 (116)
T PF14827_consen 93 FAPVY--DSDGKVIGVVSV 109 (116)
T ss_dssp EEEEE---TTS-EEEEEEE
T ss_pred EEeeE--CCCCcEEEEEEE
Confidence 46999 789999999974
No 223
>PRK04140 hypothetical protein; Provisional
Probab=42.45 E-value=44 Score=26.85 Aligned_cols=94 Identities=7% Similarity=-0.005 Sum_probs=51.4
Q ss_pred hHHHHHhhcCCCchHHHHhhhCCccccccchhhhhhcccchhhhh---hcCCccCcHHHHhhhcCCCCCCCcEEec-CCC
Q 032497 3 GAIQSFLSHGNIVKSAVLQRIRLVNPMLRPVVSSRFESVSSARME---EHGFESTTISDILKAKGKGADGSWLWCT-TDD 78 (139)
Q Consensus 3 ~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~~~v~dvm~~~~~~~~~~~~~v~-~~~ 78 (139)
+.++..|...+++..++|+.+++++.+++.=.-..-....+.... ..+..-...-|++.....+ ....... .+.
T Consensus 129 erLk~lRe~~GlSq~eLA~~lGVSr~tIskyE~G~~~Ps~e~~~kLa~~Lgv~l~~~iD~l~~~~~~--~~~~~~~~~~~ 206 (317)
T PRK04140 129 DVLREAREELGLSLGELASELGVSRRTISKYENGGMNASIEVAIKLEEILDVPLTKPIDILEKVRDD--EVTPEDPEEDP 206 (317)
T ss_pred HHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCChHHHHHHhcccccc--ccccccCCCCH
Confidence 357888999999999999999997665432111000000001101 1111111233555542100 0112233 344
Q ss_pred CHHHHHHHHHHcCCCEEEEE
Q 032497 79 TVYDAVKSMTQHNVGALVVV 98 (139)
Q Consensus 79 tl~~a~~~m~~~~~~~lpVv 98 (139)
...++++.|...|++..|+.
T Consensus 207 ~~~~il~~l~~~G~~~~~~~ 226 (317)
T PRK04140 207 FEKEILNVLTRLGFDVLPTK 226 (317)
T ss_pred HHHHHHHHHHHCCCcEEEee
Confidence 45789999999999999997
No 224
>PRK10906 DNA-binding transcriptional repressor GlpR; Provisional
Probab=41.69 E-value=16 Score=28.08 Aligned_cols=35 Identities=9% Similarity=0.229 Sum_probs=32.3
Q ss_pred hhHHHHHhhcCCCchHHHHhhhCCccccccchhhh
Q 032497 2 QGAIQSFLSHGNIVKSAVLQRIRLVNPMLRPVVSS 36 (139)
Q Consensus 2 ~~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~d~~~ 36 (139)
+.|++.++.++.++-..+++.++++..++|.|+..
T Consensus 8 ~~Il~~l~~~~~~~~~ela~~l~vS~~TiRRdL~~ 42 (252)
T PRK10906 8 DAIIELVKQQGYVSTEELVEHFSVSPQTIRRDLND 42 (252)
T ss_pred HHHHHHHHHcCCEeHHHHHHHhCCCHHHHHHHHHH
Confidence 57999999999999999999999999999998765
No 225
>PF14044 NETI: NETI protein
Probab=41.27 E-value=38 Score=20.24 Aligned_cols=25 Identities=16% Similarity=0.275 Sum_probs=20.4
Q ss_pred EEecCCCCHHHHHHHHHHcCCCEEEEE
Q 032497 72 LWCTTDDTVYDAVKSMTQHNVGALVVV 98 (139)
Q Consensus 72 ~~v~~~~tl~~a~~~m~~~~~~~lpVv 98 (139)
..+.++.|+.+.++.|.+.|+ .||-
T Consensus 2 FeV~enETI~~CL~RM~~eGY--~Pvr 26 (57)
T PF14044_consen 2 FEVEENETISDCLARMKKEGY--MPVR 26 (57)
T ss_pred eeccCCCcHHHHHHHHHHcCC--Ccee
Confidence 357899999999999999886 5553
No 226
>TIGR00168 infC translation initiation factor IF-3. render its expression particularly sensitive to excess of its gene product IF-3 thereby regulating its own expression
Probab=41.20 E-value=43 Score=24.23 Aligned_cols=38 Identities=13% Similarity=0.249 Sum_probs=25.9
Q ss_pred CCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHH
Q 032497 78 DTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYL 116 (139)
Q Consensus 78 ~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll 116 (139)
.+..+|+++..+.+++-+.|- ++.+..++=|++...+.
T Consensus 23 ~~~~eAl~~A~~~~lDLVev~-~~a~PPVckImdy~k~~ 60 (165)
T TIGR00168 23 VSREEALEIAEEAGLDLVLIS-PNAKPPVCKIMDYGKYK 60 (165)
T ss_pred ccHHHHHHHHHHcCCcEEEEC-CCCCCCEEEEeeHHHHH
Confidence 457888888888888755443 34456677888776654
No 227
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=41.18 E-value=39 Score=29.42 Aligned_cols=40 Identities=28% Similarity=0.377 Sum_probs=32.3
Q ss_pred CCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHH
Q 032497 78 DTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII 120 (139)
Q Consensus 78 ~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~ 120 (139)
.-+..+.+.....|=.-++|+ .+++++|+|..+|+++-=+
T Consensus 413 ~~l~~~~~~vs~~GGTPL~V~---~~~~~~GVI~LkDivK~Gi 452 (681)
T COG2216 413 EDLDAAVDEVSRLGGTPLVVV---ENGRILGVIYLKDIVKPGI 452 (681)
T ss_pred HHHHHHHHHHHhcCCCceEEE---ECCEEEEEEEehhhcchhH
Confidence 346778888888887888888 6899999999999876533
No 228
>TIGR03070 couple_hipB transcriptional regulator, y4mF family. Members of this family belong to a clade of helix-turn-helix DNA-binding proteins, among the larger family pfam01381 (HTH_3; Helix-turn-helix). Members are similar in sequence to the HipB protein of E. coli. Genes for members of the seed alignment for this protein family were found to be closely linked to genes encoding proteins related to HipA. The HibBA operon appears to have some features in common with toxin-antitoxin post-segregational killing systems.
Probab=39.11 E-value=20 Score=19.97 Aligned_cols=27 Identities=0% Similarity=-0.124 Sum_probs=22.2
Q ss_pred hHHHHHhhcCCCchHHHHhhhCCcccc
Q 032497 3 GAIQSFLSHGNIVKSAVLQRIRLVNPM 29 (139)
Q Consensus 3 ~~~~~~~~~~~i~~~~v~~~~~~~~~~ 29 (139)
..|+..|...+++...+++.++++...
T Consensus 5 ~~l~~~r~~~gltq~~lA~~~gvs~~~ 31 (58)
T TIGR03070 5 MLVRARRKALGLTQADLADLAGVGLRF 31 (58)
T ss_pred HHHHHHHHHcCCCHHHHHHHhCCCHHH
Confidence 467888999999999999999876543
No 229
>PRK00028 infC translation initiation factor IF-3; Reviewed
Probab=39.02 E-value=55 Score=23.96 Aligned_cols=39 Identities=10% Similarity=0.178 Sum_probs=25.6
Q ss_pred CCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHH
Q 032497 77 DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYL 116 (139)
Q Consensus 77 ~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll 116 (139)
-.++.+|+....+.+.+-+.|- ++.+..++=|++...+.
T Consensus 34 v~~~~eAl~~A~~~~lDLV~v~-~~~~PPVckI~dy~k~~ 72 (177)
T PRK00028 34 IVSTREALELAEEAGLDLVEIS-PNAKPPVCKIMDYGKFK 72 (177)
T ss_pred ceeHHHHHHHHHHcCCCEEEEC-CCCCCCEEEEEeHHHHH
Confidence 3567788888888777666553 33455677777776653
No 230
>PRK13509 transcriptional repressor UlaR; Provisional
Probab=38.25 E-value=23 Score=27.16 Aligned_cols=35 Identities=14% Similarity=0.211 Sum_probs=32.0
Q ss_pred hhHHHHHhhcCCCchHHHHhhhCCccccccchhhh
Q 032497 2 QGAIQSFLSHGNIVKSAVLQRIRLVNPMLRPVVSS 36 (139)
Q Consensus 2 ~~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~d~~~ 36 (139)
+.|++.++.++.++..++++.++++..+.|.|+..
T Consensus 8 ~~Il~~l~~~~~~~~~ela~~l~vS~~TirRdL~~ 42 (251)
T PRK13509 8 QILLELLAQLGFVTVEKVIERLGISPATARRDINK 42 (251)
T ss_pred HHHHHHHHHcCCcCHHHHHHHHCcCHHHHHHHHHH
Confidence 57899999999999999999999999999988764
No 231
>smart00594 UAS UAS domain.
Probab=36.55 E-value=44 Score=22.34 Aligned_cols=62 Identities=8% Similarity=0.205 Sum_probs=37.3
Q ss_pred hcCCccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcC---CCEEEEEecCCCC---------ceEEEEeHHHH
Q 032497 48 EHGFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHN---VGALVVVKPGEQK---------SVAGIITERDY 115 (139)
Q Consensus 48 ~~~~~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~---~~~lpVv~~d~~~---------~lvGivt~~dl 115 (139)
..-+....|.+++.. +++....+.+-.+..+++...+ +..+.+++ .++ ++-|-++.+++
T Consensus 47 r~vl~~~~V~~~i~~-------~fv~~~~dv~~~eg~~l~~~~~~~~~P~~~~l~--~~~g~~~~~~~~~~~G~~~~~~l 117 (122)
T smart00594 47 RDVLCNEAVKSLIRE-------NFIFWQVDVDTSEGQRVSQFYKLDSFPYVAIVD--PRTGQRVIEWVGVVEGEISPEEL 117 (122)
T ss_pred HHHccCHHHHHHHHc-------CEEEEEecCCChhHHHHHHhcCcCCCCEEEEEe--cCCCceeEEEeccccCCCCHHHH
Confidence 334556678888887 6777655555555666655554 45555673 333 44566666666
Q ss_pred HHH
Q 032497 116 LRK 118 (139)
Q Consensus 116 l~~ 118 (139)
+..
T Consensus 118 ~~~ 120 (122)
T smart00594 118 MTF 120 (122)
T ss_pred HHh
Confidence 543
No 232
>TIGR00158 L9 ribosomal protein L9. Ribosomal protein L9 appears to be universal in, but restricted to, eubacteria and chloroplast.
Probab=35.22 E-value=59 Score=23.07 Aligned_cols=25 Identities=20% Similarity=0.364 Sum_probs=20.4
Q ss_pred CCCCceEEEEeHHHHHHHHHHcCCC
Q 032497 101 GEQKSVAGIITERDYLRKIIVQGRS 125 (139)
Q Consensus 101 d~~~~lvGivt~~dll~~~~~~~~~ 125 (139)
+++|++.|-||..||..++...|..
T Consensus 84 ge~gklfGSVt~~~I~~~l~~~g~~ 108 (148)
T TIGR00158 84 GDEGKLFGSITTKQIADALKAAGLD 108 (148)
T ss_pred CCCCeEEEeECHHHHHHHHHHcCCc
Confidence 6789999999999998888555543
No 233
>COG0359 RplI Ribosomal protein L9 [Translation, ribosomal structure and biogenesis]
Probab=35.03 E-value=1.6e+02 Score=21.05 Aligned_cols=25 Identities=24% Similarity=0.401 Sum_probs=21.1
Q ss_pred cCCCCceEEEEeHHHHHHHHHHcCC
Q 032497 100 PGEQKSVAGIITERDYLRKIIVQGR 124 (139)
Q Consensus 100 ~d~~~~lvGivt~~dll~~~~~~~~ 124 (139)
.+++|++.|-||-+|+..++-..|.
T Consensus 83 ag~~GklfGSVt~~dIa~~l~~~g~ 107 (148)
T COG0359 83 AGEDGKLFGSVTSKDIAEALKAAGF 107 (148)
T ss_pred cCCCCceeccccHHHHHHHHHHcCC
Confidence 3578999999999999999876654
No 234
>PF01381 HTH_3: Helix-turn-helix; InterPro: IPR001387 This is large family of DNA binding helix-turn helix proteins that include a bacterial plasmid copy control protein, bacterial methylases, various bacteriophage transcription control proteins and a vegetative specific protein from Dictyostelium discoideum (Slime mould).; GO: 0043565 sequence-specific DNA binding; PDB: 2AXU_A 2AWI_D 2AXV_D 2AXZ_C 2AW6_A 3KXA_C 3BS3_A 2CRO_A 1ZUG_A 3CRO_R ....
Probab=34.61 E-value=23 Score=19.88 Aligned_cols=26 Identities=4% Similarity=0.261 Sum_probs=19.5
Q ss_pred HHHHhhcCCCchHHHHhhhCCccccc
Q 032497 5 IQSFLSHGNIVKSAVLQRIRLVNPML 30 (139)
Q Consensus 5 ~~~~~~~~~i~~~~v~~~~~~~~~~~ 30 (139)
|+..|...+++..++++.++++...+
T Consensus 1 ik~~r~~~gls~~~la~~~gis~~~i 26 (55)
T PF01381_consen 1 IKELRKEKGLSQKELAEKLGISRSTI 26 (55)
T ss_dssp HHHHHHHTTS-HHHHHHHHTS-HHHH
T ss_pred CHHHHHHcCCCHHHHHHHhCCCcchh
Confidence 56778899999999999999765543
No 235
>COG1623 Predicted nucleic-acid-binding protein (contains the HHH domain) [General function prediction only]
Probab=31.10 E-value=36 Score=27.29 Aligned_cols=29 Identities=21% Similarity=0.355 Sum_probs=26.4
Q ss_pred cEEecCCCCHHHHHHHHHHcCCCEEEEEe
Q 032497 71 WLWCTTDDTVYDAVKSMTQHNVGALVVVK 99 (139)
Q Consensus 71 ~~~v~~~~tl~~a~~~m~~~~~~~lpVv~ 99 (139)
...+.|++++++.++.....+.+++.|+.
T Consensus 15 l~~vAPGT~LR~Gld~Ilra~tGaLIvlG 43 (349)
T COG1623 15 LKRVAPGTPLRDGLDNILRANTGALIVLG 43 (349)
T ss_pred HHHhCCCCchHHHHHHHHhccCCeEEEEe
Confidence 56688999999999999999999999993
No 236
>smart00420 HTH_DEOR helix_turn_helix, Deoxyribose operon repressor.
Probab=30.70 E-value=46 Score=17.97 Aligned_cols=33 Identities=9% Similarity=0.200 Sum_probs=24.2
Q ss_pred hhHHHHHhhcCCCchHHHHhhhCCccccccchh
Q 032497 2 QGAIQSFLSHGNIVKSAVLQRIRLVNPMLRPVV 34 (139)
Q Consensus 2 ~~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~d~ 34 (139)
+.+++.+..++.++...+++.+.++...++..+
T Consensus 3 ~~il~~l~~~~~~s~~~l~~~l~~s~~tv~~~l 35 (53)
T smart00420 3 QQILELLAQQGKVSVEELAELLGVSEMTIRRDL 35 (53)
T ss_pred HHHHHHHHHcCCcCHHHHHHHHCCCHHHHHHHH
Confidence 456777777788999999999888666554433
No 237
>PF13404 HTH_AsnC-type: AsnC-type helix-turn-helix domain; PDB: 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2VC1_B 2QZ8_A 2W29_C 2IVM_B 2VBX_B ....
Probab=29.93 E-value=44 Score=18.30 Aligned_cols=29 Identities=7% Similarity=0.178 Sum_probs=22.1
Q ss_pred hhHHHHHhhcCCCchHHHHhhhCCccccc
Q 032497 2 QGAIQSFLSHGNIVKSAVLQRIRLVNPML 30 (139)
Q Consensus 2 ~~~~~~~~~~~~i~~~~v~~~~~~~~~~~ 30 (139)
++|+..+...+..+-.++++.++++....
T Consensus 6 ~~Il~~Lq~d~r~s~~~la~~lglS~~~v 34 (42)
T PF13404_consen 6 RKILRLLQEDGRRSYAELAEELGLSESTV 34 (42)
T ss_dssp HHHHHHHHH-TTS-HHHHHHHHTS-HHHH
T ss_pred HHHHHHHHHcCCccHHHHHHHHCcCHHHH
Confidence 46889999999999999999999976644
No 238
>PHA01976 helix-turn-helix protein
Probab=29.62 E-value=35 Score=19.98 Aligned_cols=27 Identities=4% Similarity=0.044 Sum_probs=22.2
Q ss_pred HHHHHhhcCCCchHHHHhhhCCccccc
Q 032497 4 AIQSFLSHGNIVKSAVLQRIRLVNPML 30 (139)
Q Consensus 4 ~~~~~~~~~~i~~~~v~~~~~~~~~~~ 30 (139)
-|+..|...+++...+|+.++++...+
T Consensus 6 rl~~~R~~~glt~~~lA~~~gvs~~~v 32 (67)
T PHA01976 6 QLIKARNARAWSAPELSRRAGVRHSLI 32 (67)
T ss_pred HHHHHHHHcCCCHHHHHHHhCCCHHHH
Confidence 467788899999999999999876543
No 239
>PF13365 Trypsin_2: Trypsin-like peptidase domain; PDB: 1Y8T_A 2Z9I_A 3QO6_A 1L1J_A 1QY6_A 2O8L_A 3OTP_E 2ZLE_I 1KY9_A 3CS0_A ....
Probab=29.51 E-value=31 Score=22.02 Aligned_cols=19 Identities=21% Similarity=0.213 Sum_probs=16.1
Q ss_pred HcCCCEEEEEecCCCCceEEE
Q 032497 89 QHNVGALVVVKPGEQKSVAGI 109 (139)
Q Consensus 89 ~~~~~~lpVv~~d~~~~lvGi 109 (139)
..+.+.-||+ |.+|+++||
T Consensus 102 ~~G~SGgpv~--~~~G~vvGi 120 (120)
T PF13365_consen 102 RPGSSGGPVF--DSDGRVVGI 120 (120)
T ss_dssp STTTTTSEEE--ETTSEEEEE
T ss_pred CCCcEeHhEE--CCCCEEEeC
Confidence 4678888999 789999997
No 240
>PRK13482 DNA integrity scanning protein DisA; Provisional
Probab=29.03 E-value=64 Score=26.40 Aligned_cols=29 Identities=14% Similarity=0.298 Sum_probs=26.1
Q ss_pred cEEecCCCCHHHHHHHHHHcCCCEEEEEe
Q 032497 71 WLWCTTDDTVYDAVKSMTQHNVGALVVVK 99 (139)
Q Consensus 71 ~~~v~~~~tl~~a~~~m~~~~~~~lpVv~ 99 (139)
...+.|+++++++++.+...+.+++.|++
T Consensus 9 l~~~APGT~Lr~~l~~i~~~k~GALIVi~ 37 (352)
T PRK13482 9 LKLVAPGTPLREGLERILRARTGALIVLG 37 (352)
T ss_pred HHHhCCCchHHHHHHHHHHhCcceEEEEe
Confidence 44578999999999999999999999994
No 241
>PRK00137 rplI 50S ribosomal protein L9; Reviewed
Probab=27.80 E-value=82 Score=22.24 Aligned_cols=24 Identities=29% Similarity=0.436 Sum_probs=20.0
Q ss_pred CCCCceEEEEeHHHHHHHHHHcCC
Q 032497 101 GEQKSVAGIITERDYLRKIIVQGR 124 (139)
Q Consensus 101 d~~~~lvGivt~~dll~~~~~~~~ 124 (139)
+++|++.|-||..||...+...|.
T Consensus 84 g~~gklfGsVt~~~I~~~l~~~g~ 107 (147)
T PRK00137 84 GEDGKLFGSVTTKDIAEALKKQGI 107 (147)
T ss_pred CCCCeEEeeeCHHHHHHHHHHcCC
Confidence 578999999999999888865543
No 242
>PF12840 HTH_20: Helix-turn-helix domain; PDB: 1ULY_A 2CWE_A 1Y0U_B 2QUF_B 2QLZ_C 2OQG_B 2ZKZ_C 3PQK_A 3PQJ_D 3F6O_B ....
Probab=27.12 E-value=45 Score=19.40 Aligned_cols=29 Identities=10% Similarity=0.251 Sum_probs=23.5
Q ss_pred hHHHHHhhcCCCchHHHHhhhCCcccccc
Q 032497 3 GAIQSFLSHGNIVKSAVLQRIRLVNPMLR 31 (139)
Q Consensus 3 ~~~~~~~~~~~i~~~~v~~~~~~~~~~~~ 31 (139)
+|++.+...++.+..++++.++.+...++
T Consensus 14 ~Il~~L~~~~~~t~~ela~~l~~~~~t~s 42 (61)
T PF12840_consen 14 RILRLLASNGPMTVSELAEELGISQSTVS 42 (61)
T ss_dssp HHHHHHHHCSTBEHHHHHHHHTS-HHHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHCCCHHHHH
Confidence 57888889999999999999988666543
No 243
>PF04703 FaeA: FaeA-like protein; PDB: 2JT1_A 2HTJ_A.
Probab=27.08 E-value=62 Score=19.51 Aligned_cols=29 Identities=7% Similarity=0.098 Sum_probs=22.2
Q ss_pred hhHHHHHhh-cCCCchHHHHhhhCCccccc
Q 032497 2 QGAIQSFLS-HGNIVKSAVLQRIRLVNPML 30 (139)
Q Consensus 2 ~~~~~~~~~-~~~i~~~~v~~~~~~~~~~~ 30 (139)
++|++.+.. +.+++-.+||++++++....
T Consensus 3 e~Il~~i~~~~~p~~T~eiA~~~gls~~~a 32 (62)
T PF04703_consen 3 EKILEYIKEQNGPLKTREIADALGLSIYQA 32 (62)
T ss_dssp HCHHHHHHHHTS-EEHHHHHHHHTS-HHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHHhCCCHHHH
Confidence 357888888 89999999999999966543
No 244
>PRK10072 putative transcriptional regulator; Provisional
Probab=26.62 E-value=39 Score=22.19 Aligned_cols=25 Identities=4% Similarity=0.046 Sum_probs=20.4
Q ss_pred HHHHhhcCCCchHHHHhhhCCcccc
Q 032497 5 IQSFLSHGNIVKSAVLQRIRLVNPM 29 (139)
Q Consensus 5 ~~~~~~~~~i~~~~v~~~~~~~~~~ 29 (139)
|+.+|...+++...+|+.++++..+
T Consensus 38 ik~LR~~~glTQ~elA~~lGvS~~T 62 (96)
T PRK10072 38 FEQLRKGTGLKIDDFARVLGVSVAM 62 (96)
T ss_pred HHHHHHHcCCCHHHHHHHhCCCHHH
Confidence 6777888999999999999986443
No 245
>PF02743 Cache_1: Cache domain; InterPro: IPR004010 Cache is an extracellular domain that is predicted to have a role in small-molecule recognition in a wide range of proteins, including the animal dihydropyridine-sensitive voltage-gated Ca2+ channel; alpha-2delta subunit, and various bacterial chemotaxis receptors. The name Cache comes from CAlcium channels and CHEmotaxis receptors. This domain consists of an N-terminal part with three predicted strands and an alpha-helix, and a C-terminal part with a strand dyad followed by a relatively unstructured region. The N-terminal portion of the (unpermuted) Cache domain contains three predicted strands that could form a sheet analogous to that present in the core of the PAS domain structure. Cache domains are particularly widespread in bacteria, with Vibrio cholerae. The animal calcium channel alpha-2delta subunits might have acquired a part of their extracellular domains from a bacterial source []. The Cache domain appears to have arisen from the GAF-PAS fold despite their divergent functions [].; GO: 0016020 membrane; PDB: 3C8C_A 3LIB_D 3LIA_A 3LI8_A 3LI9_A.
Probab=26.33 E-value=76 Score=19.19 Aligned_cols=22 Identities=5% Similarity=0.282 Sum_probs=14.5
Q ss_pred EEEEEecCCCCceEEEE----eHHHHHH
Q 032497 94 ALVVVKPGEQKSVAGII----TERDYLR 117 (139)
Q Consensus 94 ~lpVv~~d~~~~lvGiv----t~~dll~ 117 (139)
+.||. +++++++|++ +...|.+
T Consensus 18 s~pi~--~~~g~~~Gvv~~di~l~~l~~ 43 (81)
T PF02743_consen 18 SVPIY--DDDGKIIGVVGIDISLDQLSE 43 (81)
T ss_dssp EEEEE--ETTTEEEEEEEEEEEHHHHHH
T ss_pred EEEEE--CCCCCEEEEEEEEeccceeee
Confidence 45788 5688888875 4555544
No 246
>PRK00441 argR arginine repressor; Provisional
Probab=26.26 E-value=52 Score=23.35 Aligned_cols=35 Identities=3% Similarity=0.054 Sum_probs=29.8
Q ss_pred hhHHHHHhhcCCCchHHHHhhh-----CCccccccchhhh
Q 032497 2 QGAIQSFLSHGNIVKSAVLQRI-----RLVNPMLRPVVSS 36 (139)
Q Consensus 2 ~~~~~~~~~~~~i~~~~v~~~~-----~~~~~~~~~d~~~ 36 (139)
+.|.++++.++..+...+++.+ .++..++|.|+..
T Consensus 7 ~~I~~ll~~~~~~~q~eL~~~L~~~G~~vSqaTisRDl~~ 46 (149)
T PRK00441 7 AKILEIINSKEIETQEELAEELKKMGFDVTQATVSRDIKE 46 (149)
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHhcCCCcCHHHHHHHHHH
Confidence 4688999999999999999997 8888888877754
No 247
>PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif. FeoC acts as a [Fe-S] dependent transcriptional repressor []. ; PDB: 1XN7_A 2K02_A.
Probab=26.20 E-value=38 Score=20.36 Aligned_cols=30 Identities=7% Similarity=0.121 Sum_probs=22.8
Q ss_pred hhHHHHHhhcCCCchHHHHhhhCCcccccc
Q 032497 2 QGAIQSFLSHGNIVKSAVLQRIRLVNPMLR 31 (139)
Q Consensus 2 ~~~~~~~~~~~~i~~~~v~~~~~~~~~~~~ 31 (139)
.+|-+.++.++.++-.+++.+++.+...+.
T Consensus 3 ~~i~~~l~~~~~~S~~eLa~~~~~s~~~ve 32 (69)
T PF09012_consen 3 QEIRDYLRERGRVSLAELAREFGISPEAVE 32 (69)
T ss_dssp HHHHHHHHHS-SEEHHHHHHHTT--HHHHH
T ss_pred HHHHHHHHHcCCcCHHHHHHHHCcCHHHHH
Confidence 567888999999999999999998766544
No 248
>PF01022 HTH_5: Bacterial regulatory protein, arsR family; InterPro: IPR001845 Bacterial transcription regulatory proteins that bind DNA via a helix-turn-helix (HTH) motif can be grouped into families on the basis of sequence similarities. One such group, termed arsR, includes several proteins that appear to dissociate from DNA in the presence of metal ions: arsR, which functions as a transcriptional repressor of an arsenic resistance operon; smtB from Synechococcus sp. (strain PCC 7942), which acts as a transcriptional repressor of the smtA gene that codes for a metallothionein; cadC, a protein required for cadmium-resistance; and hypothetical protein yqcJ from Bacillus subtilis. The HTH motif is thought to be located in the central part of these proteins []. The motif is characterised by a number of well-conserved residues: at its N-terminal extremity is a cysteine residue; a second Cys is found in arsR and cadC, but not in smtA; and at the C terminus lie one or two histidines. These residues may be involved in metal-binding (Zn in smtB; metal-oxyanions such as arsenite, antimonite and arsenate for arsR; and cadmium for cadC) []. It is believed that binding of a metal ion could induce a conformational change that would prevent the protein from binding DNA []. The crystal structure of the cyanobacterial smtB shows a fold of five alpha-helices (H) and a pair of antiparallel beta-strands (B) in the topology H1-H2-H3-H4-B1-B2-H5. Helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing as in other wHTH, such as the dtxR-type or the merR-type. Helix 4 is termed the recognition helix, like in other HTHs where it binds the DNA major groove. Most arsR/smtB-like metalloregulators form homodimers []. The dimer interface is formed by helix 5 and an N-terminal part []. Two distinct metal-binding sites have been identified. The first site comprises cysteine thiolates located in the HTH in helix 3 and for some cases in the N terminus, called the alpha3(N) site []. The second metal-binding site is located in helix 5 (and C terminus) and is called the alpha5(C) site. The alpha3N site binds large thiophilic, toxic metals including Cd, Pb, and Bi, as in S. aureus cadC. ArsR lacks the N-terminal arm and its alpha3 site coordinates smaller thiophilic ions like As and Sb. The alpha5 site contains carboxylate and imidazole ligands and interacts preferentially with biologically required metal ions including Zn, Co, and Ni. ArsR-type metalloregulators contain one of these sites, both, or other potential metal-binding sites [, ]. Binding of metal ions to these sites leads to allosteric changes that can derepress the operator/promotor DNA. The metal-inducible operons contain one or two imperfect 12-2-12 inverted repeats, which can be recognised by multimeric arsR-type metalloregulators. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3CUO_A 1U2W_C 3F72_C 3F6V_A 3JTH_B 2P4W_B 1KU9_B 2LKP_B 1SMT_A 1R22_B ....
Probab=26.08 E-value=37 Score=18.74 Aligned_cols=29 Identities=10% Similarity=0.209 Sum_probs=22.2
Q ss_pred hHHHHHhhcCCCchHHHHhhhCCccccccc
Q 032497 3 GAIQSFLSHGNIVKSAVLQRIRLVNPMLRP 32 (139)
Q Consensus 3 ~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~ 32 (139)
+|+..++. ++.+..++++.++++...++.
T Consensus 6 ~Il~~L~~-~~~~~~el~~~l~~s~~~vs~ 34 (47)
T PF01022_consen 6 RILKLLSE-GPLTVSELAEELGLSQSTVSH 34 (47)
T ss_dssp HHHHHHTT-SSEEHHHHHHHHTS-HHHHHH
T ss_pred HHHHHHHh-CCCchhhHHHhccccchHHHH
Confidence 46777777 889999999999997776543
No 249
>CHL00160 rpl9 ribosomal protein L9; Provisional
Probab=25.97 E-value=81 Score=22.55 Aligned_cols=22 Identities=27% Similarity=0.454 Sum_probs=18.8
Q ss_pred CCCCceEEEEeHHHHHHHHHHc
Q 032497 101 GEQKSVAGIITERDYLRKIIVQ 122 (139)
Q Consensus 101 d~~~~lvGivt~~dll~~~~~~ 122 (139)
+++|++.|-||..||..++...
T Consensus 90 ge~gklfGSVt~~dIa~~l~~~ 111 (153)
T CHL00160 90 GENNQIFGSVTEKEISQIIKNK 111 (153)
T ss_pred CCCCeEEcccCHHHHHHHHHHh
Confidence 5789999999999998887444
No 250
>COG2378 Predicted transcriptional regulator [Transcription]
Probab=24.94 E-value=42 Score=26.69 Aligned_cols=34 Identities=6% Similarity=0.114 Sum_probs=30.7
Q ss_pred hHHHHHhhcCCCchHHHHhhhCCccccccchhhh
Q 032497 3 GAIQSFLSHGNIVKSAVLQRIRLVNPMLRPVVSS 36 (139)
Q Consensus 3 ~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~d~~~ 36 (139)
.||+.++.++.++...+|+.++++..++..|+-.
T Consensus 12 ~ii~~L~~~~~vta~~lA~~~~VS~RTi~RDi~~ 45 (311)
T COG2378 12 QIIQILRAKETVTAAELADEFEVSVRTIYRDIAT 45 (311)
T ss_pred HHHHHHHhCccchHHHHHHhcCCCHHHHHHHHHH
Confidence 5899999999999999999999999998888764
No 251
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=23.98 E-value=94 Score=20.02 Aligned_cols=29 Identities=10% Similarity=0.051 Sum_probs=22.9
Q ss_pred CCcEEecCCCCHHHHHHHHHHcCCCEEEE
Q 032497 69 GSWLWCTTDDTVYDAVKSMTQHNVGALVV 97 (139)
Q Consensus 69 ~~~~~v~~~~tl~~a~~~m~~~~~~~lpV 97 (139)
.+++++..++-+.+|.++..-++-+.+.+
T Consensus 50 GDp~tiSS~~EL~EA~rl~~~n~~~~l~i 78 (83)
T cd06404 50 GDPCTISSQMELEEAFRLYELNKDSELNI 78 (83)
T ss_pred CCceeecCHHHHHHHHHHHHhcCcccEEE
Confidence 37899999999999999888776555543
No 252
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=23.77 E-value=44 Score=24.72 Aligned_cols=35 Identities=9% Similarity=0.173 Sum_probs=31.0
Q ss_pred hhHHHHHhhcC--CCchHHHHhhhCCccccccchhhh
Q 032497 2 QGAIQSFLSHG--NIVKSAVLQRIRLVNPMLRPVVSS 36 (139)
Q Consensus 2 ~~~~~~~~~~~--~i~~~~v~~~~~~~~~~~~~d~~~ 36 (139)
+.|++.+..++ .++...+++.++++...+|.|+..
T Consensus 19 ~~il~~l~~~~~~~vs~~~L~~~~~v~~~tirrDl~~ 55 (213)
T PRK05472 19 YRYLKELKEEGVERVSSKELAEALGVDSAQIRKDLSY 55 (213)
T ss_pred HHHHHHHHHcCCcEEeHHHHHHHhCcCHHHHHHHHHH
Confidence 46888999999 999999999999999888888755
No 253
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=22.72 E-value=42 Score=27.48 Aligned_cols=58 Identities=16% Similarity=0.164 Sum_probs=41.2
Q ss_pred CcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHH
Q 032497 54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRK 118 (139)
Q Consensus 54 ~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~ 118 (139)
.++.++|.+.. ....-.+...-..+.+.+.+.+...+.++ +.+++.+|+++..+...+
T Consensus 274 ltA~~IM~~~~-----~~~~~~~~~~~~~al~~~~~~~~~~~~~~--~~~~~~~g~v~~~~~~~~ 331 (386)
T COG4175 274 LTAKDIMRRPD-----LLIRKTPGDGPRVALKLLRDEGREYGYAV--DRGNKFVGVVSIDSLVKA 331 (386)
T ss_pred eeHHHhhcccc-----cccccccccccchhhhhhhhccchhhHHH--hccCceeeEEeccchhcc
Confidence 57999999621 22233344445678888888888788787 567789999999988663
No 254
>PRK09954 putative kinase; Provisional
Probab=22.67 E-value=61 Score=25.80 Aligned_cols=34 Identities=3% Similarity=0.086 Sum_probs=29.5
Q ss_pred hhHHHHHhhcCCCchHHHHhhhCCccccccchhh
Q 032497 2 QGAIQSFLSHGNIVKSAVLQRIRLVNPMLRPVVS 35 (139)
Q Consensus 2 ~~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~d~~ 35 (139)
++|++.++....+++..+++.+++++...+..+-
T Consensus 6 ~~il~~l~~~~~~s~~~la~~l~~s~~~v~~~i~ 39 (362)
T PRK09954 6 KEILAILRRNPLIQQNEIADILQISRSRVAAHIM 39 (362)
T ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHH
Confidence 4689999999999999999999999998765554
No 255
>PF13560 HTH_31: Helix-turn-helix domain; PDB: 3F51_C 3F52_A 3PXP_A 2OFY_A.
Probab=22.30 E-value=49 Score=19.34 Aligned_cols=27 Identities=4% Similarity=0.252 Sum_probs=20.4
Q ss_pred HHHHHhhcCCCchHHHHhhhCCccccc
Q 032497 4 AIQSFLSHGNIVKSAVLQRIRLVNPML 30 (139)
Q Consensus 4 ~~~~~~~~~~i~~~~v~~~~~~~~~~~ 30 (139)
.++..|...+++...+++.++++...+
T Consensus 5 ~lr~~R~~~gls~~~lA~~~g~s~s~v 31 (64)
T PF13560_consen 5 RLRRLRERAGLSQAQLADRLGVSQSTV 31 (64)
T ss_dssp HHHHHHHCHTS-HHHHHHHHTS-HHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHCcCHHHH
Confidence 467788888999999999999866543
No 256
>PF00944 Peptidase_S3: Alphavirus core protein ; InterPro: IPR000930 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. Togavirin, also known as Sindbis virus core endopeptidase, is a serine protease resident at the N terminus of the p130 polyprotein of togaviruses []. The endopeptidase signature identifies the peptidase as belonging to the MEROPS peptidase family S3 (togavirin family, clan PA(S)). The polyprotein also includes structural proteins for the nucleocapsid core and for the glycoprotein spikes []. Togavirin is only active while part of the polyprotein, cleavage at a Trp-Ser bond resulting in total lack of activity []. Mutagenesis studies have identified the location of the His-Asp-Ser catalytic triad, and X-ray studies have revealed the protein fold to be similar to that of chymotrypsin [, ].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis, 0016020 membrane; PDB: 2YEW_D 1EP5_A 3J0C_F 1EP6_C 1WYK_D 1DYL_A 1VCQ_B 1VCP_B 1LD4_D 1KXA_A ....
Probab=21.71 E-value=1e+02 Score=21.96 Aligned_cols=21 Identities=10% Similarity=0.124 Sum_probs=17.1
Q ss_pred HcCCCEEEEEecCCCCceEEEEe
Q 032497 89 QHNVGALVVVKPGEQKSVAGIIT 111 (139)
Q Consensus 89 ~~~~~~lpVv~~d~~~~lvGivt 111 (139)
..|-+.-|++ |+.|+++|||-
T Consensus 104 ~~GDSGRpi~--DNsGrVVaIVL 124 (158)
T PF00944_consen 104 KPGDSGRPIF--DNSGRVVAIVL 124 (158)
T ss_dssp STTSTTEEEE--STTSBEEEEEE
T ss_pred CCCCCCCccC--cCCCCEEEEEe
Confidence 3566778999 89999999983
No 257
>PRK03341 arginine repressor; Provisional
Probab=21.31 E-value=67 Score=23.33 Aligned_cols=34 Identities=3% Similarity=0.035 Sum_probs=27.6
Q ss_pred hhHHHHHhhcCCCchHHHHhhh-----CCccccccchhh
Q 032497 2 QGAIQSFLSHGNIVKSAVLQRI-----RLVNPMLRPVVS 35 (139)
Q Consensus 2 ~~~~~~~~~~~~i~~~~v~~~~-----~~~~~~~~~d~~ 35 (139)
+.|.++++.+...++..+++.+ .++.++++.|+.
T Consensus 18 ~~I~~li~~~~i~tQ~eL~~~L~~~Gi~vTQaTiSRDl~ 56 (168)
T PRK03341 18 ARIVAILSRQSVRSQAELAALLADEGIEVTQATLSRDLD 56 (168)
T ss_pred HHHHHHHHHCCCccHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 4578899999999999999999 666666666664
No 258
>TIGR02612 mob_myst_A mobile mystery protein A. Members of this protein family are found in mobization-related contexts more often than not, including within a CRISPR-associated gene region in Geobacter sulfurreducens PCA, and on plasmids in Agrobacterium tumefaciens and Coxiella burnetii, always together with mobile mystery protein B, a member of the Fic protein family (pfam02661). This protein is encoded by the upstream member of the gene pair and belongs to a family of helix-turn-helix DNA binding proteins (pfam01381).
Probab=21.12 E-value=65 Score=22.95 Aligned_cols=28 Identities=7% Similarity=0.132 Sum_probs=24.1
Q ss_pred hhHHHHHhhcCCCchHHHHhhhCCcccc
Q 032497 2 QGAIQSFLSHGNIVKSAVLQRIRLVNPM 29 (139)
Q Consensus 2 ~~~~~~~~~~~~i~~~~v~~~~~~~~~~ 29 (139)
++.|+.+|...+++...+++.++++...
T Consensus 27 ~~~Ir~~R~~lGmTq~eLAerlGVS~~t 54 (150)
T TIGR02612 27 EGWVRAIRKALGMSGAQLAGRLGVTPQR 54 (150)
T ss_pred HHHHHHHHHHcCCCHHHHHHHhCCCHHH
Confidence 4678999999999999999999986554
No 259
>PRK09726 antitoxin HipB; Provisional
Probab=20.79 E-value=60 Score=20.48 Aligned_cols=27 Identities=11% Similarity=0.229 Sum_probs=22.0
Q ss_pred HHHHHhhcCCCchHHHHhhhCCccccc
Q 032497 4 AIQSFLSHGNIVKSAVLQRIRLVNPML 30 (139)
Q Consensus 4 ~~~~~~~~~~i~~~~v~~~~~~~~~~~ 30 (139)
-|+.+|...+++...+|+.++++...+
T Consensus 16 ~lk~~R~~~gltq~elA~~~gvs~~ti 42 (88)
T PRK09726 16 AMKLVRQQNGWTQSELAKKIGIKQATI 42 (88)
T ss_pred HHHHHHHHcCCCHHHHHHHHCcCHHHH
Confidence 467778899999999999999875544
No 260
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=20.64 E-value=1.2e+02 Score=19.15 Aligned_cols=30 Identities=10% Similarity=0.319 Sum_probs=15.9
Q ss_pred HHHcCCCEEEEEecCCCCc----eEEEEeHHHHHHH
Q 032497 87 MTQHNVGALVVVKPGEQKS----VAGIITERDYLRK 118 (139)
Q Consensus 87 m~~~~~~~lpVv~~d~~~~----lvGivt~~dll~~ 118 (139)
+.-.++..+.++ |.+|+ +.|.++..++...
T Consensus 78 ~~v~gtPt~~~~--d~~G~~v~~~~G~~~~~~l~~~ 111 (112)
T PF13098_consen 78 YGVNGTPTIVFL--DKDGKIVYRIPGYLSPEELLKM 111 (112)
T ss_dssp TT--SSSEEEEC--TTTSCEEEEEESS--HHHHHHH
T ss_pred cCCCccCEEEEE--cCCCCEEEEecCCCCHHHHHhh
Confidence 333455555566 55554 5788888887653
Done!