Query 032497
Match_columns 139
No_of_seqs 149 out of 1708
Neff 7.9
Searched_HMMs 29240
Date Tue Mar 26 00:31:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032497.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032497hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ghd_A A cystathionine beta-sy 99.6 2.8E-15 9.6E-20 93.3 7.3 66 71-139 2-67 (70)
2 3fio_A A cystathionine beta-sy 99.4 5.5E-13 1.9E-17 81.3 7.4 66 71-139 2-67 (70)
3 2yzi_A Hypothetical protein PH 99.3 3.7E-12 1.3E-16 86.7 8.4 78 51-138 4-81 (138)
4 4esy_A CBS domain containing m 99.3 3.4E-13 1.2E-17 95.7 2.4 59 51-118 15-73 (170)
5 3k6e_A CBS domain protein; str 99.3 4.4E-12 1.5E-16 89.4 7.9 79 54-139 15-96 (156)
6 3fhm_A Uncharacterized protein 99.3 8.7E-12 3E-16 87.8 9.3 82 50-138 20-102 (165)
7 2rc3_A CBS domain; in SITU pro 99.3 9.5E-12 3.2E-16 84.5 8.2 75 54-138 6-83 (135)
8 3hf7_A Uncharacterized CBS-dom 99.3 6.2E-12 2.1E-16 85.5 6.4 77 54-138 2-79 (130)
9 1pbj_A Hypothetical protein; s 99.3 1.2E-11 4.3E-16 82.5 7.8 74 54-138 1-74 (125)
10 2rih_A Conserved protein with 99.3 1.5E-11 5.2E-16 84.2 8.3 75 53-138 4-80 (141)
11 3lv9_A Putative transporter; C 99.3 1.5E-11 5.1E-16 85.0 8.2 75 51-136 20-95 (148)
12 1pvm_A Conserved hypothetical 99.3 1.8E-11 6.1E-16 87.8 8.6 80 50-138 5-84 (184)
13 3kpb_A Uncharacterized protein 99.3 1.7E-11 5.9E-16 81.6 7.9 71 54-138 1-71 (122)
14 1y5h_A Hypothetical protein RV 99.3 6E-12 2E-16 85.2 5.6 77 53-138 7-83 (133)
15 3lfr_A Putative metal ION tran 99.3 4.5E-12 1.5E-16 86.8 4.7 77 53-138 2-79 (136)
16 3fv6_A YQZB protein; CBS domai 99.2 1.4E-11 4.9E-16 86.2 7.0 76 51-137 14-89 (159)
17 2ef7_A Hypothetical protein ST 99.2 2.7E-11 9.1E-16 81.9 8.1 75 52-138 2-76 (133)
18 3k2v_A Putative D-arabinose 5- 99.2 1.5E-11 5.1E-16 85.1 6.8 78 53-138 27-104 (149)
19 3lqn_A CBS domain protein; csg 99.2 1.2E-11 4E-16 85.4 6.1 80 52-138 13-96 (150)
20 3nqr_A Magnesium and cobalt ef 99.2 7.3E-12 2.5E-16 84.6 4.8 76 53-138 2-78 (127)
21 2p9m_A Hypothetical protein MJ 99.2 2.1E-11 7.2E-16 82.8 6.7 76 52-138 6-82 (138)
22 3ctu_A CBS domain protein; str 99.2 3.3E-11 1.1E-15 83.8 7.9 80 52-138 13-95 (156)
23 3lhh_A CBS domain protein; str 99.2 2.6E-11 8.8E-16 86.2 7.3 75 51-136 39-114 (172)
24 3gby_A Uncharacterized protein 99.2 1.6E-11 5.6E-16 82.8 5.8 74 53-138 4-77 (128)
25 3i8n_A Uncharacterized protein 99.2 8.6E-12 2.9E-16 84.5 4.4 78 51-138 3-81 (130)
26 3jtf_A Magnesium and cobalt ef 99.2 1.7E-11 6E-16 83.0 5.7 75 52-138 3-78 (129)
27 2o16_A Acetoin utilization pro 99.2 3.4E-11 1.2E-15 84.5 6.8 77 53-138 4-87 (160)
28 3pc3_A CG1753, isoform A; CBS, 99.2 5.4E-11 1.9E-15 98.6 9.0 77 53-139 383-461 (527)
29 4fry_A Putative signal-transdu 99.2 5.9E-11 2E-15 82.6 7.9 81 54-138 7-87 (157)
30 3oco_A Hemolysin-like protein 99.2 4.5E-11 1.5E-15 83.2 5.7 76 51-136 17-93 (153)
31 1yav_A Hypothetical protein BS 99.1 9.3E-11 3.2E-15 81.8 7.0 81 51-138 11-95 (159)
32 3kxr_A Magnesium transporter, 99.1 1.2E-10 4.2E-15 85.6 7.5 73 50-138 50-125 (205)
33 2j9l_A Chloride channel protei 99.1 2.1E-10 7.2E-15 81.4 7.9 67 52-121 9-77 (185)
34 3oi8_A Uncharacterized protein 99.1 2.2E-11 7.6E-16 85.2 2.6 77 51-138 35-112 (156)
35 4esy_A CBS domain containing m 99.1 4.4E-11 1.5E-15 84.7 3.6 58 53-120 104-161 (170)
36 2emq_A Hypothetical conserved 99.1 1.8E-10 6E-15 79.9 6.3 81 51-138 8-92 (157)
37 2nyc_A Nuclear protein SNF4; b 99.1 1.5E-10 5.2E-15 78.8 5.5 77 52-137 6-85 (144)
38 3ocm_A Putative membrane prote 99.1 2.8E-10 9.4E-15 81.4 7.1 76 50-137 32-108 (173)
39 1o50_A CBS domain-containing p 99.1 2.6E-10 9E-15 79.5 6.7 78 50-137 12-104 (157)
40 4fry_A Putative signal-transdu 99.1 3.7E-10 1.3E-14 78.5 7.4 75 52-137 76-150 (157)
41 3sl7_A CBS domain-containing p 99.1 1.1E-10 3.7E-15 82.5 4.7 58 53-117 3-60 (180)
42 2pfi_A Chloride channel protei 99.1 3.4E-10 1.2E-14 78.8 7.1 76 52-137 11-92 (164)
43 3nqr_A Magnesium and cobalt ef 99.1 5.9E-10 2E-14 75.0 7.7 59 52-120 67-125 (127)
44 4gqw_A CBS domain-containing p 99.1 1.2E-10 4.2E-15 79.8 4.3 79 53-138 4-94 (152)
45 2d4z_A Chloride channel protei 99.0 3.1E-10 1.1E-14 86.2 6.7 63 51-120 10-72 (250)
46 3i8n_A Uncharacterized protein 99.0 7.8E-10 2.7E-14 74.7 8.0 59 52-120 70-128 (130)
47 3lv9_A Putative transporter; C 99.0 7.3E-10 2.5E-14 76.3 7.9 59 53-121 87-145 (148)
48 3kh5_A Protein MJ1225; AMPK, A 99.0 8.4E-10 2.9E-14 82.7 8.5 75 53-138 83-157 (280)
49 3hf7_A Uncharacterized CBS-dom 99.0 7.4E-10 2.5E-14 75.1 7.2 58 53-120 69-126 (130)
50 4gqw_A CBS domain-containing p 99.0 8.6E-10 2.9E-14 75.5 7.6 61 52-121 83-143 (152)
51 3jtf_A Magnesium and cobalt ef 99.0 9.8E-10 3.4E-14 74.2 7.7 59 53-121 68-126 (129)
52 3sl7_A CBS domain-containing p 99.0 9.3E-10 3.2E-14 77.6 7.6 61 52-121 96-156 (180)
53 3lhh_A CBS domain protein; str 99.0 1.2E-09 4.1E-14 77.5 7.9 59 53-121 106-164 (172)
54 3oco_A Hemolysin-like protein 99.0 1.1E-09 3.8E-14 76.0 7.4 59 53-121 85-143 (153)
55 3kpb_A Uncharacterized protein 99.0 9.2E-10 3.1E-14 73.1 6.5 57 54-119 62-118 (122)
56 3l2b_A Probable manganase-depe 99.0 9.8E-10 3.3E-14 81.9 7.0 60 53-121 6-65 (245)
57 2uv4_A 5'-AMP-activated protei 99.0 1.1E-09 3.7E-14 75.9 6.7 73 53-136 22-94 (152)
58 1pbj_A Hypothetical protein; s 99.0 1.4E-09 4.7E-14 72.4 6.6 59 52-120 63-121 (125)
59 3lfr_A Putative metal ION tran 99.0 1E-09 3.5E-14 74.8 5.9 59 52-120 68-126 (136)
60 2oux_A Magnesium transporter; 98.9 1.2E-09 4E-14 84.0 6.6 73 50-138 133-210 (286)
61 3gby_A Uncharacterized protein 98.9 6.4E-10 2.2E-14 74.9 4.6 58 54-120 68-125 (128)
62 2ef7_A Hypothetical protein ST 98.9 1.6E-09 5.6E-14 73.0 6.6 60 53-121 66-125 (133)
63 3fhm_A Uncharacterized protein 98.9 7E-10 2.4E-14 77.9 4.8 59 52-120 91-149 (165)
64 3k6e_A CBS domain protein; str 98.9 9.5E-10 3.3E-14 77.3 5.3 59 52-121 84-142 (156)
65 3kxr_A Magnesium transporter, 98.9 2E-09 6.7E-14 79.1 7.2 61 52-121 114-174 (205)
66 2p9m_A Hypothetical protein MJ 98.9 2.9E-09 1E-13 72.0 7.4 60 52-120 71-135 (138)
67 2nyc_A Nuclear protein SNF4; b 98.9 5.3E-09 1.8E-13 71.0 8.5 66 53-121 76-141 (144)
68 1vr9_A CBS domain protein/ACT 98.9 1.2E-09 4.2E-14 80.3 5.4 70 53-138 12-81 (213)
69 2rc3_A CBS domain; in SITU pro 98.9 1.8E-09 6.1E-14 73.1 5.7 59 52-120 72-130 (135)
70 2uv4_A 5'-AMP-activated protei 98.9 4.4E-09 1.5E-13 72.8 7.8 58 53-119 86-149 (152)
71 3ddj_A CBS domain-containing p 98.9 1.4E-09 4.6E-14 82.8 5.4 74 53-138 92-165 (296)
72 3lqn_A CBS domain protein; csg 98.9 3.9E-09 1.3E-13 72.6 7.1 59 52-121 85-143 (150)
73 3t4n_C Nuclear protein SNF4; C 98.9 9.4E-10 3.2E-14 84.6 4.2 77 52-137 185-264 (323)
74 2o16_A Acetoin utilization pro 98.9 4.6E-09 1.6E-13 73.4 7.4 59 52-120 76-134 (160)
75 2rih_A Conserved protein with 98.9 2.5E-09 8.6E-14 72.9 5.8 57 53-119 70-126 (141)
76 1y5h_A Hypothetical protein RV 98.9 2.7E-09 9.2E-14 71.9 5.8 58 52-119 72-129 (133)
77 2yvy_A MGTE, Mg2+ transporter 98.9 5.8E-09 2E-13 79.5 8.0 72 51-138 132-208 (278)
78 3l2b_A Probable manganase-depe 98.9 1.9E-09 6.6E-14 80.3 5.2 57 53-118 184-241 (245)
79 1o50_A CBS domain-containing p 98.9 7.1E-09 2.4E-13 72.1 7.6 59 52-120 94-152 (157)
80 2pfi_A Chloride channel protei 98.8 9.5E-09 3.3E-13 71.3 7.8 65 53-121 83-147 (164)
81 2yzq_A Putative uncharacterize 98.8 2.1E-09 7.3E-14 80.8 4.4 59 52-119 219-277 (282)
82 1vr9_A CBS domain protein/ACT 98.8 5.9E-09 2E-13 76.6 6.6 60 53-121 71-130 (213)
83 2yzi_A Hypothetical protein PH 98.8 5.9E-09 2E-13 70.6 6.0 59 52-120 70-128 (138)
84 2emq_A Hypothetical conserved 98.8 1E-08 3.5E-13 70.9 7.1 60 52-122 81-140 (157)
85 3oi8_A Uncharacterized protein 98.8 8.7E-09 3E-13 71.8 6.7 55 52-116 101-155 (156)
86 2yzq_A Putative uncharacterize 98.8 7.5E-09 2.6E-13 77.8 6.5 76 53-138 59-135 (282)
87 3kh5_A Protein MJ1225; AMPK, A 98.8 5E-09 1.7E-13 78.4 5.5 58 53-119 222-279 (280)
88 2j9l_A Chloride channel protei 98.8 7.1E-09 2.4E-13 73.4 6.0 61 52-122 106-166 (185)
89 3k2v_A Putative D-arabinose 5- 98.8 4.9E-09 1.7E-13 72.3 5.0 56 52-117 93-148 (149)
90 3ddj_A CBS domain-containing p 98.8 1.1E-08 3.9E-13 77.6 7.2 60 53-121 226-285 (296)
91 2oux_A Magnesium transporter; 98.8 1.4E-08 4.9E-13 77.9 7.4 61 52-121 199-259 (286)
92 3fv6_A YQZB protein; CBS domai 98.8 1E-08 3.5E-13 71.5 6.1 63 52-121 79-144 (159)
93 1yav_A Hypothetical protein BS 98.8 1.5E-08 5.1E-13 70.4 6.8 59 52-121 84-142 (159)
94 1pvm_A Conserved hypothetical 98.8 6.4E-09 2.2E-13 74.3 4.9 59 52-119 73-131 (184)
95 3ctu_A CBS domain protein; str 98.8 9.6E-09 3.3E-13 71.1 5.6 58 53-121 85-142 (156)
96 3t4n_C Nuclear protein SNF4; C 98.7 6.1E-08 2.1E-12 74.4 9.9 66 53-121 255-320 (323)
97 2yvy_A MGTE, Mg2+ transporter 98.7 1.2E-08 4E-13 77.8 5.3 60 52-120 197-256 (278)
98 3ocm_A Putative membrane prote 98.7 3.4E-08 1.2E-12 70.4 7.3 50 70-121 108-157 (173)
99 3org_A CMCLC; transporter, tra 98.7 4.7E-09 1.6E-13 88.8 2.6 61 52-119 451-512 (632)
100 2qrd_G Protein C1556.08C; AMPK 98.7 6.4E-08 2.2E-12 74.6 8.8 67 53-122 250-316 (334)
101 2qrd_G Protein C1556.08C; AMPK 98.7 1.8E-08 6E-13 77.8 5.6 76 53-137 181-259 (334)
102 2zy9_A Mg2+ transporter MGTE; 98.7 3E-08 1E-12 81.3 6.6 73 50-138 151-228 (473)
103 2v8q_E 5'-AMP-activated protei 98.6 1.5E-07 5.1E-12 72.5 8.1 66 53-121 258-323 (330)
104 2d4z_A Chloride channel protei 98.6 4.6E-08 1.6E-12 74.1 5.1 48 70-120 198-245 (250)
105 2zy9_A Mg2+ transporter MGTE; 98.6 8.4E-08 2.9E-12 78.6 6.9 61 52-121 217-277 (473)
106 2v8q_E 5'-AMP-activated protei 98.5 8.9E-08 3.1E-12 73.8 5.6 62 52-120 33-95 (330)
107 4fxs_A Inosine-5'-monophosphat 98.5 1.4E-07 4.8E-12 77.9 5.2 66 56-136 91-156 (496)
108 3usb_A Inosine-5'-monophosphat 98.4 1.1E-07 3.9E-12 78.6 4.3 73 56-137 109-183 (511)
109 1zfj_A Inosine monophosphate d 98.4 3E-07 1E-11 75.3 6.0 68 55-137 91-160 (491)
110 3pc3_A CG1753, isoform A; CBS, 98.4 1.3E-07 4.3E-12 78.3 2.4 60 52-122 449-512 (527)
111 3org_A CMCLC; transporter, tra 98.4 2.1E-07 7.2E-12 78.7 3.8 54 55-118 569-622 (632)
112 1vrd_A Inosine-5'-monophosphat 98.4 4.7E-08 1.6E-12 80.3 -0.3 68 55-137 96-163 (494)
113 3usb_A Inosine-5'-monophosphat 98.3 1.2E-06 4.2E-11 72.4 7.5 61 52-120 173-233 (511)
114 1me8_A Inosine-5'-monophosphat 98.3 1.3E-07 4.6E-12 78.0 1.2 59 53-120 160-220 (503)
115 4af0_A Inosine-5'-monophosphat 98.2 1.7E-07 5.8E-12 77.8 0.0 63 69-138 146-209 (556)
116 1me8_A Inosine-5'-monophosphat 98.2 1.6E-07 5.3E-12 77.6 -0.3 62 70-138 106-170 (503)
117 4avf_A Inosine-5'-monophosphat 98.2 1.1E-07 3.7E-12 78.4 -1.3 66 55-136 89-154 (490)
118 4avf_A Inosine-5'-monophosphat 98.2 2.1E-07 7.2E-12 76.7 0.0 60 53-119 146-205 (490)
119 1zfj_A Inosine monophosphate d 98.1 4E-06 1.4E-10 68.6 6.4 60 53-120 151-210 (491)
120 4af0_A Inosine-5'-monophosphat 98.0 5.7E-07 2E-11 74.6 0.0 58 53-119 199-256 (556)
121 1vrd_A Inosine-5'-monophosphat 98.0 9.3E-07 3.2E-11 72.6 0.3 61 53-120 154-214 (494)
122 1jcn_A Inosine monophosphate d 98.0 3E-07 1E-11 76.0 -2.9 70 55-137 109-181 (514)
123 2cu0_A Inosine-5'-monophosphat 98.0 9.1E-07 3.1E-11 72.6 0.0 58 53-119 149-206 (486)
124 4fxs_A Inosine-5'-monophosphat 97.9 1E-06 3.6E-11 72.6 -0.6 61 52-119 147-207 (496)
125 2cu0_A Inosine-5'-monophosphat 97.8 2.4E-06 8.4E-11 70.1 -0.6 64 56-137 95-158 (486)
126 1jcn_A Inosine monophosphate d 97.5 2.3E-06 7.7E-11 70.7 -4.2 60 53-119 172-231 (514)
127 1xn7_A Hypothetical protein YH 87.5 0.2 7E-06 30.9 1.3 35 2-36 5-39 (78)
128 2k02_A Ferrous iron transport 86.6 0.27 9.1E-06 31.1 1.5 36 1-36 4-39 (87)
129 1tif_A IF3-N, translation init 75.8 7.1 0.00024 23.9 5.1 30 93-124 14-43 (78)
130 2jt1_A PEFI protein; solution 57.6 3.8 0.00013 24.9 1.2 35 2-36 7-47 (77)
131 1xmk_A Double-stranded RNA-spe 55.9 5.6 0.00019 24.3 1.7 34 2-35 14-48 (79)
132 4a0z_A Transcription factor FA 54.6 5.9 0.0002 28.1 1.9 35 2-36 15-49 (190)
133 2htj_A P fimbrial regulatory p 54.5 6.8 0.00023 23.3 2.0 33 2-34 3-35 (81)
134 2heo_A Z-DNA binding protein 1 48.7 6.1 0.00021 23.0 1.0 32 3-34 14-46 (67)
135 1qbj_A Protein (double-strande 46.1 8.9 0.0003 23.4 1.5 33 2-34 13-48 (81)
136 3r8s_H 50S ribosomal protein L 43.2 30 0.001 23.6 4.0 26 99-124 83-108 (149)
137 2p5k_A Arginine repressor; DNA 42.7 14 0.00048 20.5 1.9 32 4-35 10-46 (64)
138 3fmy_A HTH-type transcriptiona 41.4 14 0.00047 21.4 1.8 27 4-30 15-41 (73)
139 3kz3_A Repressor protein CI; f 39.9 7 0.00024 22.9 0.3 29 2-30 14-42 (80)
140 1qgp_A Protein (double strande 39.1 11 0.00036 22.6 1.0 32 2-33 17-51 (77)
141 3k2t_A LMO2511 protein; lister 38.6 44 0.0015 19.0 3.6 35 76-112 11-45 (57)
142 1j5y_A Transcriptional regulat 36.8 16 0.00054 25.4 1.8 34 2-35 24-58 (187)
143 1bia_A BIRA bifunctional prote 36.4 15 0.0005 28.0 1.7 35 2-36 8-42 (321)
144 1b4a_A Arginine repressor; hel 35.8 18 0.00063 24.6 1.9 35 2-36 8-47 (149)
145 4ghj_A Probable transcriptiona 35.2 14 0.00048 23.3 1.2 27 4-30 40-66 (101)
146 3ka5_A Ribosome-associated pro 34.2 55 0.0019 19.1 3.6 35 76-112 11-45 (65)
147 1p0z_A Sensor kinase CITA; tra 32.7 37 0.0013 21.7 3.0 16 95-112 106-121 (131)
148 1div_A Ribosomal protein L9; r 32.6 40 0.0014 23.0 3.2 26 100-125 83-109 (149)
149 3tjo_A Serine protease HTRA1; 32.6 28 0.00096 24.9 2.6 21 90-112 186-206 (231)
150 1oyi_A Double-stranded RNA-bin 32.1 14 0.00048 22.8 0.8 32 2-34 20-51 (82)
151 3by8_A Sensor protein DCUS; hi 31.8 39 0.0013 22.0 3.1 19 95-115 111-129 (142)
152 1r69_A Repressor protein CI; g 30.7 22 0.00077 19.5 1.5 28 3-30 4-31 (69)
153 1zug_A Phage 434 CRO protein; 30.4 23 0.00078 19.6 1.5 28 3-30 6-33 (71)
154 3o9x_A Uncharacterized HTH-typ 30.2 25 0.00084 22.7 1.8 27 4-30 75-101 (133)
155 2xi8_A Putative transcription 30.0 20 0.0007 19.4 1.2 27 4-30 5-31 (66)
156 3qq6_A HTH-type transcriptiona 29.8 20 0.00068 20.9 1.2 27 4-30 14-40 (78)
157 3lgi_A Protease DEGS; stress-s 29.8 30 0.001 24.7 2.4 22 89-112 172-193 (237)
158 3b7h_A Prophage LP1 protein 11 29.5 24 0.00081 20.0 1.5 28 3-30 10-37 (78)
159 2k9q_A Uncharacterized protein 29.3 13 0.00045 21.4 0.3 28 3-30 5-32 (77)
160 1y7y_A C.AHDI; helix-turn-heli 29.3 24 0.00082 19.7 1.5 27 3-29 16-42 (74)
161 1svj_A Potassium-transporting 29.2 31 0.0011 23.5 2.2 33 80-115 121-153 (156)
162 3t76_A VANU, transcriptional r 29.0 21 0.00071 21.8 1.2 27 4-30 28-54 (88)
163 2b5a_A C.BCLI; helix-turn-heli 28.9 24 0.00084 19.9 1.5 28 3-30 13-40 (77)
164 3k6y_A Serine protease, possib 28.6 36 0.0012 24.2 2.6 22 90-113 180-201 (237)
165 2kpj_A SOS-response transcript 28.2 29 0.00099 20.8 1.8 28 3-30 12-39 (94)
166 3omt_A Uncharacterized protein 28.0 16 0.00054 20.7 0.5 27 4-30 12-38 (73)
167 2a6c_A Helix-turn-helix motif; 27.9 31 0.0011 20.2 1.9 28 3-30 21-48 (83)
168 3sti_A Protease DEGQ; serine p 27.9 37 0.0013 24.7 2.6 22 89-112 183-204 (245)
169 3lyv_A Ribosome-associated fac 27.2 57 0.002 19.1 2.8 35 76-112 12-46 (66)
170 2wiu_B HTH-type transcriptiona 27.1 27 0.00093 20.3 1.5 28 3-30 15-42 (88)
171 1neq_A DNA-binding protein NER 27.0 34 0.0012 20.1 1.9 29 3-32 13-41 (74)
172 2w5e_A Putative serine proteas 26.9 37 0.0013 23.2 2.3 23 88-112 122-144 (163)
173 3s8q_A R-M controller protein; 26.7 28 0.00096 20.1 1.5 28 3-30 14-41 (82)
174 2ewt_A BLDD, putative DNA-bind 26.6 29 0.00099 19.2 1.5 26 3-28 11-38 (71)
175 2r1j_L Repressor protein C2; p 25.7 22 0.00074 19.4 0.8 28 3-30 8-35 (68)
176 3bs3_A Putative DNA-binding pr 25.6 26 0.0009 19.7 1.2 27 4-30 14-40 (76)
177 2ef8_A C.ECOT38IS, putative tr 25.1 31 0.0011 19.8 1.5 28 3-30 13-40 (84)
178 1lmb_3 Protein (lambda repress 25.0 18 0.0006 21.5 0.3 28 3-30 20-47 (92)
179 1x57_A Endothelial differentia 25.0 38 0.0013 20.0 1.9 28 3-30 16-43 (91)
180 2vid_A Serine protease SPLB; h 24.8 48 0.0016 22.5 2.6 22 90-113 154-175 (204)
181 3eus_A DNA-binding protein; st 24.8 32 0.0011 20.3 1.5 27 3-29 17-43 (86)
182 3i4p_A Transcriptional regulat 24.7 33 0.0011 23.0 1.7 33 2-34 6-38 (162)
183 2ppx_A AGR_C_3184P, uncharacte 24.5 28 0.00095 21.2 1.2 27 4-30 34-60 (99)
184 1adr_A P22 C2 repressor; trans 24.2 24 0.00082 19.8 0.8 28 3-30 8-35 (76)
185 2l49_A C protein; P2 bacteriop 24.0 35 0.0012 20.4 1.6 28 3-30 7-34 (99)
186 3b73_A PHIH1 repressor-like pr 24.0 28 0.00095 22.4 1.2 30 2-31 16-47 (111)
187 2wus_R RODZ, putative uncharac 24.0 37 0.0013 21.6 1.8 28 3-30 10-37 (112)
188 3g5g_A Regulatory protein; tra 23.8 33 0.0011 21.1 1.5 28 3-30 31-58 (99)
189 3bd1_A CRO protein; transcript 23.8 31 0.001 19.9 1.2 29 1-31 1-29 (79)
190 1qtf_A Exfoliative toxin B; se 23.7 49 0.0017 23.6 2.6 23 89-113 182-204 (246)
191 1stz_A Heat-inducible transcri 23.6 34 0.0012 26.3 1.8 35 2-36 20-61 (338)
192 3fan_A Non-structural protein; 23.1 39 0.0013 24.6 1.8 25 89-115 123-147 (213)
193 3vk0_A NHTF, transcriptional r 23.0 31 0.001 21.6 1.2 28 3-30 24-51 (114)
194 3f6w_A XRE-family like protein 22.5 27 0.00092 20.2 0.8 27 3-29 17-43 (83)
195 2as9_A Serine protease; trypsi 22.3 47 0.0016 23.1 2.2 21 90-112 155-175 (210)
196 2dbb_A Putative HTH-type trans 21.9 44 0.0015 21.8 1.9 33 2-34 12-44 (151)
197 1agj_A Epidermolytic toxin A; 21.8 57 0.002 23.1 2.6 21 90-112 192-212 (242)
198 2cg4_A Regulatory protein ASNC 21.6 46 0.0016 21.8 1.9 33 2-34 11-43 (152)
199 2l0k_A Stage III sporulation p 21.5 39 0.0013 21.0 1.4 34 2-36 10-43 (93)
200 1nkw_F 50S ribosomal protein L 21.5 63 0.0022 21.9 2.6 24 100-124 82-105 (146)
201 2w7s_A Serine protease SPLA; h 21.1 56 0.0019 22.2 2.4 22 90-113 151-172 (200)
202 2p5v_A Transcriptional regulat 20.9 48 0.0016 22.1 1.9 33 2-34 13-45 (162)
203 1i1g_A Transcriptional regulat 20.6 50 0.0017 21.2 1.9 33 2-34 7-39 (141)
204 2cfx_A HTH-type transcriptiona 20.4 50 0.0017 21.5 1.9 33 2-34 8-40 (144)
205 1r7h_A NRDH-redoxin; thioredox 20.3 67 0.0023 17.6 2.3 45 71-118 28-72 (75)
206 2auw_A Hypothetical protein NE 20.3 42 0.0014 23.5 1.5 27 4-30 94-120 (170)
207 1l1j_A Heat shock protease HTR 20.2 57 0.002 23.5 2.3 22 89-112 179-200 (239)
208 2qkp_A Uncharacterized protein 20.2 59 0.002 21.4 2.2 17 93-111 109-125 (151)
209 3mlf_A Transcriptional regulat 20.1 39 0.0013 21.2 1.2 27 4-30 27-53 (111)
No 1
>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}
Probab=99.60 E-value=2.8e-15 Score=93.29 Aligned_cols=66 Identities=33% Similarity=0.557 Sum_probs=59.4
Q ss_pred cEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCCCCccCccccccccCC
Q 032497 71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEEV 139 (139)
Q Consensus 71 ~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~~~~~~~v~~im~~~v 139 (139)
++++.|++|+.+|+++|.+++++++||+ ++++++||+|.+|+++++...+..+.+.+|+++|++++
T Consensus 2 ~vtv~p~~tv~ea~~~M~~~~i~~~~V~---d~~~lvGIvT~~Di~~~~~~~~~~~~~~~V~~iMt~~~ 67 (70)
T 3ghd_A 2 AIVVQPKDTVDRVAKILSRNKAGSAVVM---EGDEILGVVTERDILDKVVAKGKNPKEVKVEEIMTKNP 67 (70)
T ss_dssp EEEECTTCBHHHHHHHHHHTTCSEEEEE---ETTEEEEEEEHHHHHHHTTTTTCCGGGCBGGGTCEECT
T ss_pred CEEECCCCcHHHHHHHHHHcCCCEEEEE---ECCEEEEEEEHHHHHHHHHhcCCCcccCCHHHhcCCCC
Confidence 6889999999999999999999999999 36899999999999988877777666789999999874
No 2
>3fio_A A cystathionine beta-synthase domain protein fused to A Zn-ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus} PDB: 3ghd_A
Probab=99.42 E-value=5.5e-13 Score=81.32 Aligned_cols=66 Identities=32% Similarity=0.536 Sum_probs=57.1
Q ss_pred cEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCCCCccCccccccccCC
Q 032497 71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEEV 139 (139)
Q Consensus 71 ~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~~~~~~~v~~im~~~v 139 (139)
+.++++++++.+|++.|.+++++++||+ |+ ++++|+||.+|+++++...+....+.+++++|++++
T Consensus 2 ~~~v~~~~~~~~a~~~m~~~~~~~~pV~--d~-~~l~Givt~~dl~~~~~~~~~~~~~~~v~~im~~~~ 67 (70)
T 3fio_A 2 AIVVQPKDTVDRVAKILSRNKAGSAVVM--EG-DEILGVVTERDILDKVVAKGKNPKEVKVEEIMTKNP 67 (70)
T ss_dssp EEEECTTCBHHHHHHHHHHTTCSEEEEE--ET-TEEEEEEEHHHHHHHTTTTTCCGGGCBGGGTCEECT
T ss_pred CeEECCCCcHHHHHHHHHHcCCCEEEEE--EC-CEEEEEEEHHHHHHHHHHcCCCcccCCHHHhcCCCC
Confidence 6789999999999999999999999999 45 899999999999988755554345788999998764
No 3
>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1
Probab=99.35 E-value=3.7e-12 Score=86.75 Aligned_cols=78 Identities=28% Similarity=0.420 Sum_probs=66.5
Q ss_pred CccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCCCCccCc
Q 032497 51 FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTK 130 (139)
Q Consensus 51 ~~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~~~~~~~ 130 (139)
+...+++++|++ ++.++++++++.+|++.|.+++++++||+ |++|+++|+||.+|+++.+...+.. ...+
T Consensus 4 l~~~~v~~im~~-------~~~~v~~~~~~~~a~~~~~~~~~~~~~Vv--d~~~~~~Givt~~dl~~~~~~~~~~-~~~~ 73 (138)
T 2yzi_A 4 DMKAPIKVYMTK-------KLLGVKPSTSVQEASRLMMEFDVGSLVVI--NDDGNVVGFFTKSDIIRRVIVPGLP-YDIP 73 (138)
T ss_dssp CTTSBGGGTCBC-------CCCEECTTSBHHHHHHHHHHHTCSEEEEE--CTTSCEEEEEEHHHHHHHTTTTCCC-TTSB
T ss_pred hhhhhHHHHhcC-------CCeEECCCCcHHHHHHHHHHcCCCEEEEE--cCCCcEEEEEeHHHHHHHHHhcCCc-ccCC
Confidence 456789999998 79999999999999999999999999999 6789999999999997555444432 4678
Q ss_pred cccccccC
Q 032497 131 VGDIMTEE 138 (139)
Q Consensus 131 v~~im~~~ 138 (139)
+.++|.++
T Consensus 74 v~~~m~~~ 81 (138)
T 2yzi_A 74 VERIMTRN 81 (138)
T ss_dssp GGGTCBCS
T ss_pred HHHHhhCC
Confidence 99999764
No 4
>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}
Probab=99.33 E-value=3.4e-13 Score=95.71 Aligned_cols=59 Identities=36% Similarity=0.549 Sum_probs=54.6
Q ss_pred CccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHH
Q 032497 51 FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRK 118 (139)
Q Consensus 51 ~~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~ 118 (139)
+...+|+|+|++ ++.++.+++|+.+|++.|.+++++++||+ |++|+++|+||.+|++++
T Consensus 15 l~~~~V~diM~~-------~v~~v~~~~tl~~a~~~m~~~~~~~~pVv--d~~g~lvGiit~~Dll~~ 73 (170)
T 4esy_A 15 IRQVPIRDILTS-------PVVTVREDDTLDAVAKTMLEHQIGCAPVV--DQNGHLVGIITESDFLRG 73 (170)
T ss_dssp HHTSBGGGGCCS-------CCCCEETTSBHHHHHHHHHHTTCSEEEEE--CTTSCEEEEEEGGGGGGG
T ss_pred HcCCCHHHhcCC-------CCcEECCcCcHHHHHHHHHHcCCeEEEEE--cCCccEEEEEEHHHHHHH
Confidence 345789999999 89999999999999999999999999999 789999999999999764
No 5
>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}
Probab=99.32 E-value=4.4e-12 Score=89.41 Aligned_cols=79 Identities=16% Similarity=0.143 Sum_probs=66.1
Q ss_pred CcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCCC---CccCc
Q 032497 54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRS---SKSTK 130 (139)
Q Consensus 54 ~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~~---~~~~~ 130 (139)
.+++++|++.. ++.++.+++|+.+|++.|.+++++++||+ |++++++|+||.+|+++++...+.. ....+
T Consensus 15 ~~~~~iM~P~~-----~v~~v~~~~t~~~a~~~m~~~~~s~~pVv--d~~~~lvGiit~~Di~~~~~~~~~~~~~~~~~~ 87 (156)
T 3k6e_A 15 GQEETFLTPAK-----NLAVLIDTHNADHATLLLSQMTYTRVPVV--TDEKQFVGTIGLRDIMAYQMEHDLSQEIMADTD 87 (156)
T ss_dssp TTGGGGEEETT-----SSCCEETTSBHHHHHHHHTTSSSSEEEEE--CC-CBEEEEEEHHHHHHHHHHHTCCHHHHTTSB
T ss_pred ccHHHhCcchh-----HeEEECCcCCHHHHHHHHHHcCCcEEEEE--cCCCcEEEEEEecchhhhhhhcccccccccccC
Confidence 57899999754 68999999999999999999999999999 7789999999999999887655432 13567
Q ss_pred cccccccCC
Q 032497 131 VGDIMTEEV 139 (139)
Q Consensus 131 v~~im~~~v 139 (139)
+.++|++++
T Consensus 88 v~~im~~~~ 96 (156)
T 3k6e_A 88 IVHMTKTDV 96 (156)
T ss_dssp GGGTCBCSC
T ss_pred HHHhhcCCc
Confidence 899998753
No 6
>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}
Probab=99.32 E-value=8.7e-12 Score=87.84 Aligned_cols=82 Identities=29% Similarity=0.381 Sum_probs=69.0
Q ss_pred CCccCcHHHHhhhc-CCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCCCCcc
Q 032497 50 GFESTTISDILKAK-GKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKS 128 (139)
Q Consensus 50 ~~~~~~v~dvm~~~-~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~~~~~ 128 (139)
.+..++|+++|+++ . ++.++.+++++.+|++.|.+++++++||+ |++|+++|+||.+|+++++...+.....
T Consensus 20 ~l~~~~v~dim~~~~~-----~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv--d~~~~~~Givt~~dl~~~~~~~~~~~~~ 92 (165)
T 3fhm_A 20 QGMATFVKDLLDRKGR-----DVVTVGPDVSIGEAAGTLHAHKIGAVVVT--DADGVVLGIFTERDLVKAVAGQGAASLQ 92 (165)
T ss_dssp SSSSCBHHHHHHHHCS-----CCCEECTTSBHHHHHHHHHHHTCSEEEEE--CTTSCEEEEEEHHHHHHHHHHHGGGGGT
T ss_pred hhhhcCHHHHhccCCC-----CCeEECCCCCHHHHHHHHHHcCCCEEEEE--cCCCeEEEEEEHHHHHHHHHhcCCcccc
Confidence 34568999999962 1 58999999999999999999999999999 7789999999999999887654323356
Q ss_pred CccccccccC
Q 032497 129 TKVGDIMTEE 138 (139)
Q Consensus 129 ~~v~~im~~~ 138 (139)
.++.++|.++
T Consensus 93 ~~v~~~m~~~ 102 (165)
T 3fhm_A 93 QSVSVAMTKN 102 (165)
T ss_dssp SBGGGTSBSS
T ss_pred CCHHHHhcCC
Confidence 7899999765
No 7
>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1
Probab=99.30 E-value=9.5e-12 Score=84.49 Aligned_cols=75 Identities=35% Similarity=0.605 Sum_probs=64.7
Q ss_pred CcHHHHhh---hcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCCCCccCc
Q 032497 54 TTISDILK---AKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTK 130 (139)
Q Consensus 54 ~~v~dvm~---~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~~~~~~~ 130 (139)
.+++++|+ + ++.++++++++.+|++.|.+++++++||+ | +++++|+||.+|+++.+...+......+
T Consensus 6 ~~v~~im~~~~~-------~~~~v~~~~~~~~a~~~~~~~~~~~~~Vv--d-~~~~~Givt~~dl~~~~~~~~~~~~~~~ 75 (135)
T 2rc3_A 6 KTVKHLLQEKGH-------TVVAIGPDDSVFNAMQKMAADNIGALLVM--K-DEKLVGILTERDFSRKSYLLDKPVKDTQ 75 (135)
T ss_dssp CBHHHHHHHHCC-------CCCEECTTSBHHHHHHHHHHHTCSEEEEE--E-TTEEEEEEEHHHHHHHGGGSSSCGGGSB
T ss_pred eeHHHHHhcCCC-------CcEEECCCCcHHHHHHHHHhcCCCEEEEE--E-CCEEEEEEehHHHHHHHHHcCCCcccCC
Confidence 48999999 6 78999999999999999999999999999 5 7899999999999876555544335778
Q ss_pred cccccccC
Q 032497 131 VGDIMTEE 138 (139)
Q Consensus 131 v~~im~~~ 138 (139)
+.++|.++
T Consensus 76 v~~~m~~~ 83 (135)
T 2rc3_A 76 VKEIMTRQ 83 (135)
T ss_dssp GGGTSBCS
T ss_pred HHHhccCC
Confidence 99999765
No 8
>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}
Probab=99.28 E-value=6.2e-12 Score=85.54 Aligned_cols=77 Identities=13% Similarity=0.203 Sum_probs=62.2
Q ss_pred CcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCC-CCceEEEEeHHHHHHHHHHcCCCCccCccc
Q 032497 54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGE-QKSVAGIITERDYLRKIIVQGRSSKSTKVG 132 (139)
Q Consensus 54 ~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~-~~~lvGivt~~dll~~~~~~~~~~~~~~v~ 132 (139)
.+|+++|++.. ++.++++++++.+|++.|.+++++++||+ ++ +++++|+||.+|+++++. .+......++.
T Consensus 2 ~~v~~iM~~~~-----~~~~v~~~~~v~~a~~~m~~~~~~~~pVv--~~~~~~lvGivt~~dl~~~~~-~~~~~~~~~v~ 73 (130)
T 3hf7_A 2 VSVNDIMVPRN-----EIVGIDINDDWKSIVRQLTHSPHGRIVLY--RDSLDDAISMLRVREAYRLMT-EKKEFTKEIML 73 (130)
T ss_dssp CBHHHHSEEGG-----GCCEEETTSCHHHHHHHHHTCSSSEEEEE--SSSGGGEEEEEEHHHHHHHHT-SSSCCCHHHHH
T ss_pred cCHHHhCccHH-----HEEEEcCCCCHHHHHHHHHHCCCCeEEEE--cCCCCcEEEEEEHHHHHHHHh-ccCccchhhHH
Confidence 57999997522 58999999999999999999999999999 44 589999999999988764 33222345788
Q ss_pred cccccC
Q 032497 133 DIMTEE 138 (139)
Q Consensus 133 ~im~~~ 138 (139)
++|.++
T Consensus 74 ~~m~~~ 79 (130)
T 3hf7_A 74 RAADEI 79 (130)
T ss_dssp HHSBCC
T ss_pred HhccCC
Confidence 888554
No 9
>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1
Probab=99.28 E-value=1.2e-11 Score=82.49 Aligned_cols=74 Identities=22% Similarity=0.324 Sum_probs=63.0
Q ss_pred CcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCCCCccCcccc
Q 032497 54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGD 133 (139)
Q Consensus 54 ~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~~~~~~~v~~ 133 (139)
++++++|.+ ++.++.+++++.+|++.|.+++.+++||+ | +++++|+||.+|+++.+. .+......++.+
T Consensus 1 m~v~~~m~~-------~~~~v~~~~~~~~a~~~~~~~~~~~~~Vv--d-~~~~~G~it~~dl~~~~~-~~~~~~~~~v~~ 69 (125)
T 1pbj_A 1 MRVEDVMVT-------DVDTIDITASLEDVLRNYVENAKGSSVVV--K-EGVRVGIVTTWDVLEAIA-EGDDLAEVKVWE 69 (125)
T ss_dssp -CHHHHCBC-------SCCEEETTCBHHHHHHHHHHHCCCEEEEE--E-TTEEEEEEEHHHHHHHHH-HTCCTTTSBHHH
T ss_pred CCHHHhcCC-------CceEECCCCcHHHHHHHHHHcCCCEEEEE--e-CCeeEEEEeHHHHHHHHh-cCCcccccCHHH
Confidence 478999998 89999999999999999999999999999 6 899999999999987654 333334678899
Q ss_pred ccccC
Q 032497 134 IMTEE 138 (139)
Q Consensus 134 im~~~ 138 (139)
+|.++
T Consensus 70 ~m~~~ 74 (125)
T 1pbj_A 70 VMERD 74 (125)
T ss_dssp HCBCG
T ss_pred HcCCC
Confidence 98754
No 10
>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A
Probab=99.28 E-value=1.5e-11 Score=84.16 Aligned_cols=75 Identities=19% Similarity=0.269 Sum_probs=64.4
Q ss_pred cCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCC--ceEEEEeHHHHHHHHHHcCCCCccCc
Q 032497 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQK--SVAGIITERDYLRKIIVQGRSSKSTK 130 (139)
Q Consensus 53 ~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~--~lvGivt~~dll~~~~~~~~~~~~~~ 130 (139)
..+++++|++ ++.++.+++++.+|++.|.+++++++||+ |+++ +++|+||.+|+++.+. .+.. .+.+
T Consensus 4 ~~~v~~im~~-------~~~~v~~~~~~~~a~~~~~~~~~~~~~Vv--d~~~~~~~~Givt~~dl~~~~~-~~~~-~~~~ 72 (141)
T 2rih_A 4 AIRTSELLKR-------PPVSLPETATIREVATELAKNRVGLAVLT--ARDNPKRPVAVVSERDILRAVA-QRLD-LDGP 72 (141)
T ss_dssp -CBGGGGCCS-------CCEEEETTCBHHHHHHHHHHHTCSEEEEE--ETTEEEEEEEEEEHHHHHHHHH-TTCC-TTSB
T ss_pred ceEHHHHhcC-------CCeEeCCCCcHHHHHHHHHHcCCCEEEEE--cCCCcceeEEEEEHHHHHHHHh-cCCC-CCCC
Confidence 4689999998 89999999999999999999999999999 5677 9999999999988764 3433 4678
Q ss_pred cccccccC
Q 032497 131 VGDIMTEE 138 (139)
Q Consensus 131 v~~im~~~ 138 (139)
+.++|.++
T Consensus 73 v~~~m~~~ 80 (141)
T 2rih_A 73 AMPIANSP 80 (141)
T ss_dssp SGGGCBCC
T ss_pred HHHHcCCC
Confidence 99999765
No 11
>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}
Probab=99.27 E-value=1.5e-11 Score=84.97 Aligned_cols=75 Identities=16% Similarity=0.301 Sum_probs=63.6
Q ss_pred CccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCC-CceEEEEeHHHHHHHHHHcCCCCccC
Q 032497 51 FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQ-KSVAGIITERDYLRKIIVQGRSSKST 129 (139)
Q Consensus 51 ~~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~-~~lvGivt~~dll~~~~~~~~~~~~~ 129 (139)
+...+|+++|++.. ++.++++++++.+|++.|.+++++++||+ |++ ++++|+||.+|+++.+.... ..
T Consensus 20 l~~~~v~diM~~~~-----~~~~v~~~~~~~~a~~~m~~~~~~~~pVv--d~~~~~lvGivt~~dl~~~~~~~~----~~ 88 (148)
T 3lv9_A 20 FEEKKIREIMVPRT-----DMVCIYESDSEEKILAILKEEGVTRYPVC--RKNKDDILGFVHIRDLYNQKINEN----KI 88 (148)
T ss_dssp GGTCBGGGTSEETT-----TCCCEETTCCHHHHHHHHHHSCCSEEEEE--SSSTTSEEEEEEHHHHHHHHHHHS----CC
T ss_pred cCCCCHHHccccHH-----HeEEECCCCCHHHHHHHHHHCCCCEEEEE--cCCCCcEEEEEEHHHHHHHHhcCC----Cc
Confidence 45689999999732 58899999999999999999999999999 666 89999999999998765432 56
Q ss_pred ccccccc
Q 032497 130 KVGDIMT 136 (139)
Q Consensus 130 ~v~~im~ 136 (139)
+++++|.
T Consensus 89 ~v~~~m~ 95 (148)
T 3lv9_A 89 ELEEILR 95 (148)
T ss_dssp CGGGTCB
T ss_pred cHHHhcC
Confidence 7889983
No 12
>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A
Probab=99.27 E-value=1.8e-11 Score=87.76 Aligned_cols=80 Identities=21% Similarity=0.400 Sum_probs=66.4
Q ss_pred CCccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCCCCccC
Q 032497 50 GFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKST 129 (139)
Q Consensus 50 ~~~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~~~~~~ 129 (139)
+....+++++|++ ++.++.+++++.+|++.|.+++++++||+ |++++++|+||.+|+++.+...+......
T Consensus 5 g~~~~~v~~im~~-------~~~~v~~~~~l~ea~~~~~~~~~~~~pVv--d~~g~~vGivt~~dl~~~~~~~~~~~~~~ 75 (184)
T 1pvm_A 5 GHMFMRVEKIMNS-------NFKTVNWNTTVFDAVKIMNENHLYGLVVK--DDNGNDVGLLSERSIIKRFIPRNKKPDEV 75 (184)
T ss_dssp --CCCBGGGTSBT-------TCCEEETTCBHHHHHHHHHHHTCCEEEEE--CTTSCEEEEEEHHHHHHHTGGGCCCGGGS
T ss_pred cccccCHHHhcCC-------CCeEECCCCcHHHHHHHHHHcCCCEEEEE--cCCCcEEEEEeHHHHHHHHhhcccCcccC
Confidence 3345789999998 79999999999999999999999999999 67799999999999988764323233567
Q ss_pred ccccccccC
Q 032497 130 KVGDIMTEE 138 (139)
Q Consensus 130 ~v~~im~~~ 138 (139)
+++++|.++
T Consensus 76 ~v~~im~~~ 84 (184)
T 1pvm_A 76 PIRLVMRKP 84 (184)
T ss_dssp BGGGTSBSS
T ss_pred CHHHHhCCC
Confidence 899999864
No 13
>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*
Probab=99.26 E-value=1.7e-11 Score=81.57 Aligned_cols=71 Identities=27% Similarity=0.437 Sum_probs=62.1
Q ss_pred CcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCCCCccCcccc
Q 032497 54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGD 133 (139)
Q Consensus 54 ~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~~~~~~~v~~ 133 (139)
++++++|.+ ++.++++++++.+|++.|.+++.+++||+ |++++++|+||.+|+++++.. ...++++
T Consensus 1 ~~v~~im~~-------~~~~v~~~~~~~~a~~~~~~~~~~~~~Vv--d~~~~~~G~vt~~dl~~~~~~-----~~~~v~~ 66 (122)
T 3kpb_A 1 TLVKDILSK-------PPITAHSNISIMEAAKILIKHNINHLPIV--DEHGKLVGIITSWDIAKALAQ-----NKKTIEE 66 (122)
T ss_dssp CBHHHHCCS-------CCCCEETTSBHHHHHHHHHHHTCSCEEEE--CTTSBEEEEECHHHHHHHHHT-----TCCBGGG
T ss_pred CchHHhhCC-------CCEEeCCCCcHHHHHHHHHHcCCCeEEEE--CCCCCEEEEEEHHHHHHHHHh-----cccCHHH
Confidence 478999998 89999999999999999999999999999 778999999999999887642 1347888
Q ss_pred ccccC
Q 032497 134 IMTEE 138 (139)
Q Consensus 134 im~~~ 138 (139)
+|.++
T Consensus 67 ~~~~~ 71 (122)
T 3kpb_A 67 IMTRN 71 (122)
T ss_dssp TSBSS
T ss_pred HhcCC
Confidence 88664
No 14
>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A
Probab=99.26 E-value=6e-12 Score=85.18 Aligned_cols=77 Identities=26% Similarity=0.481 Sum_probs=64.2
Q ss_pred cCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCCCCccCccc
Q 032497 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVG 132 (139)
Q Consensus 53 ~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~~~~~~~v~ 132 (139)
..+++++|.+ ++.++++++++.+|++.|.+++++++||+ |++++++|+||.+|+++..+..+......+++
T Consensus 7 ~~~v~~im~~-------~~~~v~~~~~~~~a~~~~~~~~~~~~~Vv--d~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~ 77 (133)
T 1y5h_A 7 MTTARDIMNA-------GVTCVGEHETLTAAAQYMREHDIGALPIC--GDDDRLHGMLTDRDIVIKGLAAGLDPNTATAG 77 (133)
T ss_dssp -CCHHHHSEE-------TCCCEETTSBHHHHHHHHHHHTCSEEEEE--CGGGBEEEEEEHHHHHHTTGGGTCCTTTSBHH
T ss_pred hcCHHHHhcC-------CceEeCCCCCHHHHHHHHHHhCCCeEEEE--CCCCeEEEEEeHHHHHHHHHhcCCCccccCHH
Confidence 4689999998 78999999999999999999999999999 67899999999999985333344333467889
Q ss_pred cccccC
Q 032497 133 DIMTEE 138 (139)
Q Consensus 133 ~im~~~ 138 (139)
++|.++
T Consensus 78 ~~m~~~ 83 (133)
T 1y5h_A 78 ELARDS 83 (133)
T ss_dssp HHHTTC
T ss_pred HHhcCC
Confidence 998754
No 15
>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}
Probab=99.25 E-value=4.5e-12 Score=86.75 Aligned_cols=77 Identities=17% Similarity=0.315 Sum_probs=63.0
Q ss_pred cCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCC-CceEEEEeHHHHHHHHHHcCCCCccCcc
Q 032497 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQ-KSVAGIITERDYLRKIIVQGRSSKSTKV 131 (139)
Q Consensus 53 ~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~-~~lvGivt~~dll~~~~~~~~~~~~~~v 131 (139)
..+|+++|++.. ++.++.+++|+.+|++.|.+++++++||+ +++ ++++|+||.+|+++++. .+. ....++
T Consensus 2 ~~~v~~iM~~~~-----~~~~v~~~~~v~~a~~~m~~~~~~~~pVv--d~~~~~~vGivt~~dl~~~~~-~~~-~~~~~v 72 (136)
T 3lfr_A 2 DLQVRDIMVPRS-----QMISIKATQTPREFLPAVIDAAHSRYPVI--GESHDDVLGVLLAKDLLPLIL-KAD-GDSDDV 72 (136)
T ss_dssp -CBHHHHSEEGG-----GCCCEETTCCHHHHHHHHHHHCCSEEEEE--SSSTTCEEEEEEGGGGGGGGG-SSS-GGGCCG
T ss_pred CCChHhccccHH-----HEEEEcCCCCHHHHHHHHHhCCCCEEEEE--cCCCCcEEEEEEHHHHHHHHH-hcc-CCCcCH
Confidence 468999999421 68999999999999999999999999999 566 79999999999987653 122 246789
Q ss_pred ccccccC
Q 032497 132 GDIMTEE 138 (139)
Q Consensus 132 ~~im~~~ 138 (139)
.++|+++
T Consensus 73 ~~~m~~~ 79 (136)
T 3lfr_A 73 KKLLRPA 79 (136)
T ss_dssp GGTCBCC
T ss_pred HHHcCCC
Confidence 9999764
No 16
>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*
Probab=99.24 E-value=1.4e-11 Score=86.23 Aligned_cols=76 Identities=29% Similarity=0.424 Sum_probs=64.7
Q ss_pred CccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCCCCccCc
Q 032497 51 FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTK 130 (139)
Q Consensus 51 ~~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~~~~~~~ 130 (139)
+..++|+++|++ + +++.+++++.+|++.|.+++++++||+ |++++++|+||.+|+++++... ......+
T Consensus 14 l~~~~v~~im~~-------~-~~v~~~~~~~~a~~~m~~~~~~~~~Vv--d~~~~~~Givt~~dl~~~~~~~-~~~~~~~ 82 (159)
T 3fv6_A 14 LKKLQVKDFQSI-------P-VVIHENVSVYDAICTMFLEDVGTLFVV--DRDAVLVGVLSRKDLLRASIGQ-QELTSVP 82 (159)
T ss_dssp HTTCBGGGSCBC-------C-CEEETTSBHHHHHHHHHHHTCSEEEEE--CTTSCEEEEEEHHHHHHHHTSC-SCTTTCB
T ss_pred HhhCCHHHHcCC-------C-EEECCCCcHHHHHHHHHHCCCCEEEEE--cCCCcEEEEEeHHHHHHHhhcc-CcccCcC
Confidence 346799999987 4 599999999999999999999999999 7789999999999998876433 2335778
Q ss_pred ccccccc
Q 032497 131 VGDIMTE 137 (139)
Q Consensus 131 v~~im~~ 137 (139)
+.++|++
T Consensus 83 v~~~m~~ 89 (159)
T 3fv6_A 83 VHIIMTR 89 (159)
T ss_dssp GGGTSEE
T ss_pred HHHHHcC
Confidence 9999985
No 17
>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1
Probab=99.24 E-value=2.7e-11 Score=81.92 Aligned_cols=75 Identities=35% Similarity=0.531 Sum_probs=64.2
Q ss_pred ccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCCCCccCcc
Q 032497 52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKV 131 (139)
Q Consensus 52 ~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~~~~~~~v 131 (139)
...+++++|.+ ++.++.+++++.+|++.|.+++++++||+ | +++++|+||.+|+++.+. .+.. ...++
T Consensus 2 ~~~~v~~im~~-------~~~~v~~~~~~~~a~~~~~~~~~~~~~Vv--d-~~~~~Givt~~dl~~~~~-~~~~-~~~~v 69 (133)
T 2ef7_A 2 EEEIVKEYMKT-------QVISVTKDAKLNDIAKVMTEKNIGSVIVV--D-GNKPVGIITERDIVKAIG-KGKS-LETKA 69 (133)
T ss_dssp CCCBGGGTSBC-------SCCEEETTCBHHHHHHHHHHHTCSEEEEE--E-TTEEEEEEEHHHHHHHHH-TTCC-TTCBG
T ss_pred CcccHHHhccC-------CCEEECCCCcHHHHHHHHHhcCCCEEEEE--E-CCEEEEEEcHHHHHHHHh-cCCC-cccCH
Confidence 35789999998 79999999999999999999999999999 6 789999999999987664 3333 46789
Q ss_pred ccccccC
Q 032497 132 GDIMTEE 138 (139)
Q Consensus 132 ~~im~~~ 138 (139)
.++|.++
T Consensus 70 ~~~~~~~ 76 (133)
T 2ef7_A 70 EEFMTAS 76 (133)
T ss_dssp GGTSEEC
T ss_pred HHHcCCC
Confidence 9999754
No 18
>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*
Probab=99.24 E-value=1.5e-11 Score=85.15 Aligned_cols=78 Identities=22% Similarity=0.365 Sum_probs=65.4
Q ss_pred cCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCCCCccCccc
Q 032497 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVG 132 (139)
Q Consensus 53 ~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~~~~~~~v~ 132 (139)
.++++++|++.. ++.++.+++++.+|++.|.+++++++||+ |++|+++|+||.+|+++.+. .+......+++
T Consensus 27 ~~~v~dim~~~~-----~~~~v~~~~~~~~a~~~m~~~~~~~~~Vv--d~~~~~~Givt~~dl~~~~~-~~~~~~~~~v~ 98 (149)
T 3k2v_A 27 LLRVNDIMHTGD-----EIPHVGLQATLRDALLEITRKNLGMTAIC--DDDMNIIGIFTDGDLRRVFD-TGVDMRDASIA 98 (149)
T ss_dssp TSBGGGTSBCGG-----GSCEECTTCBHHHHHHHHHHHTSSEEEEE--CTTCBEEEEEEHHHHHHHHC-SSSCCTTCBHH
T ss_pred ccCHHHHhcCCC-----CCeEECCCCcHHHHHHHHHhCCCcEEEEE--CCCCcEEEEecHHHHHHHHh-cCCCcccCcHH
Confidence 368999998632 47899999999999999999999999999 77899999999999988663 33333577899
Q ss_pred cccccC
Q 032497 133 DIMTEE 138 (139)
Q Consensus 133 ~im~~~ 138 (139)
++|+++
T Consensus 99 ~~m~~~ 104 (149)
T 3k2v_A 99 DVMTRG 104 (149)
T ss_dssp HHSEES
T ss_pred HHcCCC
Confidence 999764
No 19
>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0
Probab=99.24 E-value=1.2e-11 Score=85.45 Aligned_cols=80 Identities=15% Similarity=0.225 Sum_probs=65.3
Q ss_pred ccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCC----CCc
Q 032497 52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGR----SSK 127 (139)
Q Consensus 52 ~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~----~~~ 127 (139)
..++|+++|+++. ++.++.+++++.+|++.|.+++++++||+ |++|+++|+||.+|+++++..... ...
T Consensus 13 ~~~~v~~im~~~~-----~~~~v~~~~~l~~a~~~~~~~~~~~~pVv--d~~~~~~Givt~~dl~~~~~~~~~~~~~~~~ 85 (150)
T 3lqn_A 13 QQIFVKDLMISSE-----KVAHVQIGNGLEHALLVLVKSGYSAIPVL--DPMYKLHGLISTAMILDGILGLERIEFERLE 85 (150)
T ss_dssp HHCBHHHHSEEGG-----GSCCBCTTSBHHHHHHHHHHHTCSEEEEE--CTTCBEEEEEEHHHHHHHTBCSSSBCGGGGG
T ss_pred hcCChhhcccCCC-----ceEEECCCCcHHHHHHHHHHcCCcEEEEE--CCCCCEEEEEEHHHHHHHHHhhcccchhHHh
Confidence 4589999999521 58999999999999999999999999999 778999999999999887632110 113
Q ss_pred cCccccccccC
Q 032497 128 STKVGDIMTEE 138 (139)
Q Consensus 128 ~~~v~~im~~~ 138 (139)
..+++++|.++
T Consensus 86 ~~~v~~~m~~~ 96 (150)
T 3lqn_A 86 EMKVEQVMKQD 96 (150)
T ss_dssp GCBGGGTCBSS
T ss_pred cCCHHHHhcCC
Confidence 56889999865
No 20
>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}
Probab=99.23 E-value=7.3e-12 Score=84.56 Aligned_cols=76 Identities=12% Similarity=0.285 Sum_probs=62.3
Q ss_pred cCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCC-CceEEEEeHHHHHHHHHHcCCCCccCcc
Q 032497 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQ-KSVAGIITERDYLRKIIVQGRSSKSTKV 131 (139)
Q Consensus 53 ~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~-~~lvGivt~~dll~~~~~~~~~~~~~~v 131 (139)
..+++++|++.. ++.++.+++++.+|++.|.+++++++||+ |++ ++++|+||.+|+++.+.. +. ...++
T Consensus 2 ~~~v~diM~~~~-----~~~~v~~~~~~~~a~~~m~~~~~~~~pVv--d~~~~~~vGivt~~dl~~~~~~-~~--~~~~v 71 (127)
T 3nqr_A 2 DQRVRDIMIPRS-----QMITLKRNQTLDECLDVIIESAHSRFPVI--SEDKDHIEGILMAKDLLPFMRS-DA--EAFSM 71 (127)
T ss_dssp -CBHHHHSEEGG-----GCCCEETTCCHHHHHHHHHHHCCSEEEEE--SSSTTCEEEEEEGGGGGGGGST-TC--CCCCH
T ss_pred CcCHHHhcccHH-----HeEEEcCCCCHHHHHHHHHhCCCCEEEEE--cCCCCcEEEEEEHHHHHHHHhc-cC--CCCCH
Confidence 368999999621 48999999999999999999999999999 666 899999999999876532 21 36778
Q ss_pred ccccccC
Q 032497 132 GDIMTEE 138 (139)
Q Consensus 132 ~~im~~~ 138 (139)
+++|+++
T Consensus 72 ~~~m~~~ 78 (127)
T 3nqr_A 72 DKVLRTA 78 (127)
T ss_dssp HHHCBCC
T ss_pred HHHcCCC
Confidence 9998664
No 21
>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}
Probab=99.22 E-value=2.1e-11 Score=82.81 Aligned_cols=76 Identities=22% Similarity=0.424 Sum_probs=64.6
Q ss_pred ccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHH-HHHHHHcCCCCccCc
Q 032497 52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDY-LRKIIVQGRSSKSTK 130 (139)
Q Consensus 52 ~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dl-l~~~~~~~~~~~~~~ 130 (139)
...+++++|++ ++.++.+++++.+|++.|.+++.+++||+ |++++++|+||.+|+ ++.+. .+.. ...+
T Consensus 6 ~~~~v~~im~~-------~~~~v~~~~~~~~a~~~~~~~~~~~~~Vv--d~~~~~~Givt~~dl~~~~~~-~~~~-~~~~ 74 (138)
T 2p9m_A 6 KNIKVKDVMTK-------NVITAKRHEGVVEAFEKMLKYKISSLPVI--DDENKVIGIVTTTDIGYNLIR-DKYT-LETT 74 (138)
T ss_dssp TTCBGGGTSBC-------SCCCEETTSBHHHHHHHHHHHTCCEEEEE--CTTCBEEEEEEHHHHHHHHTT-TCCC-SSCB
T ss_pred ccCCHHHhhcC-------CceEECCCCcHHHHHHHHHHCCCcEEEEE--CCCCeEEEEEEHHHHHHHHHh-hccc-CCcC
Confidence 45789999998 78999999999999999999999999999 678999999999999 77553 2322 4678
Q ss_pred cccccccC
Q 032497 131 VGDIMTEE 138 (139)
Q Consensus 131 v~~im~~~ 138 (139)
+.++|.++
T Consensus 75 v~~~m~~~ 82 (138)
T 2p9m_A 75 IGDVMTKD 82 (138)
T ss_dssp HHHHSCSS
T ss_pred HHHHhCCC
Confidence 89998754
No 22
>3ctu_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.81A {Streptococcus pneumoniae TIGR4} PDB: 3k6e_A
Probab=99.22 E-value=3.3e-11 Score=83.75 Aligned_cols=80 Identities=15% Similarity=0.106 Sum_probs=65.0
Q ss_pred ccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCCC---Ccc
Q 032497 52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRS---SKS 128 (139)
Q Consensus 52 ~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~~---~~~ 128 (139)
...+++++|++.. ++.++.+++++.+|++.|.+++++++||+ |++|+++|+||.+|+++.+...... ...
T Consensus 13 ~~~~v~dim~p~~-----~~~~v~~~~~l~~a~~~m~~~~~~~~~Vv--d~~~~~~Giit~~dl~~~~~~~~~~~~~~~~ 85 (156)
T 3ctu_A 13 LLGQEETFLTPAK-----NLAVLIDTHNADHATLLLSQMTYTRVPVV--TDEKQFVGTIGLRDIMAYQMEHDLSQEIMAD 85 (156)
T ss_dssp HHTTGGGGEEEGG-----GCCCEETTSBHHHHHHHHTTCSSSEEEEE--CC-CBEEEEEEHHHHHHHHHHHTCCHHHHTT
T ss_pred HHHHHHHHcCccc-----CceEECCCCCHHHHHHHHHHCCCceEeEE--CCCCEEEEEEcHHHHHHHHHhcccccccccc
Confidence 3468999999422 68999999999999999999999999999 7789999999999999887643321 125
Q ss_pred CccccccccC
Q 032497 129 TKVGDIMTEE 138 (139)
Q Consensus 129 ~~v~~im~~~ 138 (139)
.+++++|+++
T Consensus 86 ~~v~~~m~~~ 95 (156)
T 3ctu_A 86 TDIVHMTKTD 95 (156)
T ss_dssp SBGGGGCBCS
T ss_pred CcHHHhccCC
Confidence 7889999764
No 23
>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}
Probab=99.22 E-value=2.6e-11 Score=86.23 Aligned_cols=75 Identities=16% Similarity=0.333 Sum_probs=60.9
Q ss_pred CccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCC-CceEEEEeHHHHHHHHHHcCCCCccC
Q 032497 51 FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQ-KSVAGIITERDYLRKIIVQGRSSKST 129 (139)
Q Consensus 51 ~~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~-~~lvGivt~~dll~~~~~~~~~~~~~ 129 (139)
+...+|+++|++.. ++.++++++|+.+|++.|.+++++++||+ |++ ++++|+||.+|++++... + ...
T Consensus 39 l~~~~v~diM~~~~-----~~~~v~~~~~v~~a~~~m~~~~~~~~pVv--d~~~~~lvGivt~~dl~~~~~~-~---~~~ 107 (172)
T 3lhh_A 39 LDERTISSLMVPRS-----DIVFLDLNLPLDANLRTVMQSPHSRFPVC--RNNVDDMVGIISAKQLLSESIA-G---ERL 107 (172)
T ss_dssp ----CTTTTSEEGG-----GCCCEETTSCHHHHHHHHHTCCCSEEEEE--SSSTTSEEEEEEHHHHHHHHHT-T---CCC
T ss_pred cCCCCHHHhCccHH-----HeEEEcCCCCHHHHHHHHHhCCCCEEEEE--eCCCCeEEEEEEHHHHHHHHhh-c---Ccc
Confidence 45689999999421 68999999999999999999999999999 666 899999999999987642 2 257
Q ss_pred ccccccc
Q 032497 130 KVGDIMT 136 (139)
Q Consensus 130 ~v~~im~ 136 (139)
++.++|.
T Consensus 108 ~v~~im~ 114 (172)
T 3lhh_A 108 ELVDLVK 114 (172)
T ss_dssp CGGGGCB
T ss_pred cHHHHhc
Confidence 8899993
No 24
>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}
Probab=99.21 E-value=1.6e-11 Score=82.78 Aligned_cols=74 Identities=16% Similarity=0.183 Sum_probs=62.5
Q ss_pred cCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCCCCccCccc
Q 032497 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVG 132 (139)
Q Consensus 53 ~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~~~~~~~v~ 132 (139)
..+++++|.+ ++.++++++++.+|++.|.+++++++||+ |+ ++++|+||.+|+++.+. .+.. ...+++
T Consensus 4 s~~v~~~m~~-------~~~~v~~~~~~~~a~~~~~~~~~~~~~Vv--d~-~~~~Givt~~dl~~~~~-~~~~-~~~~v~ 71 (128)
T 3gby_A 4 SVTFSYLAET-------DYPVFTLGGSTADAARRLAASGCACAPVL--DG-ERYLGMVHLSRLLEGRK-GWPT-VKEKLG 71 (128)
T ss_dssp TCBGGGGCBC-------CSCCEETTSBHHHHHHHHHHHTCSEEEEE--ET-TEEEEEEEHHHHHTTCS-SSCC-TTCBCC
T ss_pred ceEHHHhhcC-------CcceECCCCCHHHHHHHHHHCCCcEEEEE--EC-CEEEEEEEHHHHHHHHh-hCCc-ccCcHH
Confidence 5789999999 89999999999999999999999999999 56 99999999999987542 2222 236788
Q ss_pred cccccC
Q 032497 133 DIMTEE 138 (139)
Q Consensus 133 ~im~~~ 138 (139)
++|.++
T Consensus 72 ~~m~~~ 77 (128)
T 3gby_A 72 EELLET 77 (128)
T ss_dssp GGGCBC
T ss_pred HHccCC
Confidence 998764
No 25
>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}
Probab=99.21 E-value=8.6e-12 Score=84.51 Aligned_cols=78 Identities=10% Similarity=0.237 Sum_probs=61.8
Q ss_pred CccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCC-CceEEEEeHHHHHHHHHHcCCCCccC
Q 032497 51 FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQ-KSVAGIITERDYLRKIIVQGRSSKST 129 (139)
Q Consensus 51 ~~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~-~~lvGivt~~dll~~~~~~~~~~~~~ 129 (139)
+...+++++|++.. ++.++++++++.+|++.|.+++++++||+ |++ ++++|+||.+|+++++. .+. ...
T Consensus 3 l~~~~v~~iM~~~~-----~v~~v~~~~~~~~a~~~m~~~~~~~~pVv--d~~~~~~~Givt~~dl~~~~~-~~~--~~~ 72 (130)
T 3i8n_A 3 AQDVPVTQVMTPRP-----VVFRVDATMTINEFLDKHKDTPFSRPLVY--SEQKDNIIGFVHRLELFKMQQ-SGS--GQK 72 (130)
T ss_dssp ----CCTTTSCCBC-----CCCEEETTSBHHHHHHHTTTCSCSCCEEE--SSSTTCEEEECCHHHHHHHHH-TTT--TTS
T ss_pred cCcCCHhhCCCcHH-----HEEEEcCCCCHHHHHHHHHhCCCCEEEEE--eCCCCcEEEEEEHHHHHHHHh-cCC--CcC
Confidence 34678999999632 46789999999999999999999999999 665 89999999999998764 332 367
Q ss_pred ccccccccC
Q 032497 130 KVGDIMTEE 138 (139)
Q Consensus 130 ~v~~im~~~ 138 (139)
+++++|+++
T Consensus 73 ~v~~~m~~~ 81 (130)
T 3i8n_A 73 QLGAVMRPI 81 (130)
T ss_dssp BHHHHSEEC
T ss_pred CHHHHhcCC
Confidence 788988643
No 26
>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}
Probab=99.21 E-value=1.7e-11 Score=82.98 Aligned_cols=75 Identities=12% Similarity=0.278 Sum_probs=61.8
Q ss_pred ccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCC-CceEEEEeHHHHHHHHHHcCCCCccCc
Q 032497 52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQ-KSVAGIITERDYLRKIIVQGRSSKSTK 130 (139)
Q Consensus 52 ~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~-~~lvGivt~~dll~~~~~~~~~~~~~~ 130 (139)
...+|+++|++.. ++.++++++++.+|++.|.+++++++||+ |++ ++++|+||.+|+++++. ....+
T Consensus 3 ~~~~v~diM~~~~-----~~~~v~~~~~~~~a~~~m~~~~~~~~pVv--d~~~~~~~Givt~~dl~~~~~-----~~~~~ 70 (129)
T 3jtf_A 3 AERTVADIMVPRS-----RMDLLDISQPLPQLLATIIETAHSRFPVY--EDDRDNIIGILLAKDLLRYML-----EPALD 70 (129)
T ss_dssp -CCBHHHHCEEGG-----GCCCEETTSCHHHHHHHHHHSCCSEEEEE--SSSTTCEEEEEEGGGGGGGGT-----CTTSC
T ss_pred CCCCHHHhCccHH-----HeEEECCCCCHHHHHHHHHHcCCCEEEEE--cCCCCcEEEEEEHHHHHhHhc-----cCCcC
Confidence 3578999999421 67899999999999999999999999999 564 89999999999987642 13567
Q ss_pred cccccccC
Q 032497 131 VGDIMTEE 138 (139)
Q Consensus 131 v~~im~~~ 138 (139)
++++|+++
T Consensus 71 v~~~m~~~ 78 (129)
T 3jtf_A 71 IRSLVRPA 78 (129)
T ss_dssp GGGGCBCC
T ss_pred HHHHhCCC
Confidence 88888754
No 27
>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1
Probab=99.19 E-value=3.4e-11 Score=84.49 Aligned_cols=77 Identities=18% Similarity=0.226 Sum_probs=63.8
Q ss_pred cCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHc-------CCC
Q 032497 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQ-------GRS 125 (139)
Q Consensus 53 ~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~-------~~~ 125 (139)
..+|+++|++ ++.++.+++|+.+|++.|.+++++++||+ |++++++|+||.+|+++.+... ...
T Consensus 4 ~~~v~dim~~-------~~~~v~~~~tl~~a~~~m~~~~~~~~pVv--d~~~~lvGivt~~dl~~~~~~~~~~~~~~~~~ 74 (160)
T 2o16_A 4 MIKVEDMMTR-------HPHTLLRTHTLNDAKHLMEALDIRHVPIV--DANKKLLGIVSQRDLLAAQESSLQRSAQGDSL 74 (160)
T ss_dssp CCBGGGTSEE-------SCCCBCTTSBHHHHHHHHHHHTCSEEEEE--CTTCBEEEEEEHHHHHHHHHHHCC--------
T ss_pred cCcHHHHhcC-------CCeEECCCCcHHHHHHHHHHcCCCEEEEE--cCCCcEEEEEeHHHHHHHHHHhhcccccccch
Confidence 4689999998 79999999999999999999999999999 6789999999999998876431 111
Q ss_pred CccCccccccccC
Q 032497 126 SKSTKVGDIMTEE 138 (139)
Q Consensus 126 ~~~~~v~~im~~~ 138 (139)
....++.++|.++
T Consensus 75 ~~~~~v~~im~~~ 87 (160)
T 2o16_A 75 AFETPLFEVMHTD 87 (160)
T ss_dssp -CCCBHHHHSCSC
T ss_pred hcccCHHHHhcCC
Confidence 2466788888764
No 28
>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*
Probab=99.19 E-value=5.4e-11 Score=98.56 Aligned_cols=77 Identities=23% Similarity=0.308 Sum_probs=67.7
Q ss_pred cCcHHHHhhhcCCCCCCCcEEecCC-CCHHHHHHHHHHcCCCEEEEEecC-CCCceEEEEeHHHHHHHHHHcCCCCccCc
Q 032497 53 STTISDILKAKGKGADGSWLWCTTD-DTVYDAVKSMTQHNVGALVVVKPG-EQKSVAGIITERDYLRKIIVQGRSSKSTK 130 (139)
Q Consensus 53 ~~~v~dvm~~~~~~~~~~~~~v~~~-~tl~~a~~~m~~~~~~~lpVv~~d-~~~~lvGivt~~dll~~~~~~~~~~~~~~ 130 (139)
..+|+++|++ +++++.++ +|+.+|+++|.+++++++||+ | ++++++|+||.+||++++...... .+.+
T Consensus 383 ~~~V~diM~~-------~~vtv~~~~~tv~ea~~~m~~~~~~~lpVv--d~~~g~lvGiVt~~Dll~~l~~~~~~-~~~~ 452 (527)
T 3pc3_A 383 SLAIAELELP-------APPVILKSDATVGEAIALMKKHRVDQLPVV--DQDDGSVLGVVGQETLITQIVSMNRQ-QSDP 452 (527)
T ss_dssp TSBGGGGCCC-------CCSCCEETTCBHHHHHHHHHHHTCSEEEEE--CTTTCCEEEEEEHHHHHHHHHHHCCC-TTSB
T ss_pred CCcHHHhCcC-------CCeEEcCCCCcHHHHHHHHHHcCCCeEEEE--ECCCCEEEEEEEHHHHHHHHHhccCc-CCCc
Confidence 5789999998 89999999 999999999999999999999 6 689999999999999988654333 5788
Q ss_pred cccccccCC
Q 032497 131 VGDIMTEEV 139 (139)
Q Consensus 131 v~~im~~~v 139 (139)
|.++|++++
T Consensus 453 V~~im~~~~ 461 (527)
T 3pc3_A 453 AIKALNKRV 461 (527)
T ss_dssp GGGGEETTC
T ss_pred HHHHhcCCC
Confidence 999997653
No 29
>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}
Probab=99.19 E-value=5.9e-11 Score=82.56 Aligned_cols=81 Identities=49% Similarity=0.749 Sum_probs=65.3
Q ss_pred CcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCCCCccCcccc
Q 032497 54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGD 133 (139)
Q Consensus 54 ~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~~~~~~~v~~ 133 (139)
.+|+|+|+++.+ -+.++.++.+++++.+|++.|.+++++++||+ ++++++|+||.+|+++++...+......++.+
T Consensus 7 ~~v~dim~~~~~-~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~V~---~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~ 82 (157)
T 4fry_A 7 TTVAQILKAKPD-SGRTIYTVTKNDFVYDAIKLMAEKGIGALLVV---DGDDIAGIVTERDYARKVVLQERSSKATRVEE 82 (157)
T ss_dssp CBHHHHHHHSTT-TTCCCCEEETTSBHHHHHHHHHHHTCSEEEEE---SSSSEEEEEEHHHHHHHSGGGTCCSSSCBHHH
T ss_pred HHHHHHHhcccc-cCCCCeEECCCCcHHHHHHHHHHcCCCEEEEe---eCCEEEEEEEHHHHHHHHHhccCCccccCHHH
Confidence 579999996200 00046999999999999999999999999997 48999999999999988765554435788999
Q ss_pred ccccC
Q 032497 134 IMTEE 138 (139)
Q Consensus 134 im~~~ 138 (139)
+|.++
T Consensus 83 ~m~~~ 87 (157)
T 4fry_A 83 IMTAK 87 (157)
T ss_dssp HSBSS
T ss_pred HcCCC
Confidence 99764
No 30
>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}
Probab=99.15 E-value=4.5e-11 Score=83.15 Aligned_cols=76 Identities=18% Similarity=0.306 Sum_probs=63.0
Q ss_pred CccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEE-ecCCCCceEEEEeHHHHHHHHHHcCCCCccC
Q 032497 51 FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVV-KPGEQKSVAGIITERDYLRKIIVQGRSSKST 129 (139)
Q Consensus 51 ~~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv-~~d~~~~lvGivt~~dll~~~~~~~~~~~~~ 129 (139)
+...+|+++|++.. ++.++++++++.+|++.|.+++++++||+ + +++++++|+||.+|+++++... ...
T Consensus 17 l~~~~v~~iM~~~~-----~~~~v~~~~~~~~a~~~m~~~~~~~~pVv~d-~~~~~lvGivt~~dl~~~~~~~----~~~ 86 (153)
T 3oco_A 17 MNDKVASDVMVDRT-----SMSVVDVDETIADALLLYLEEQYSRFPVTAD-NDKDKIIGYAYNYDIVRQARID----DKA 86 (153)
T ss_dssp HHHCBHHHHSEEGG-----GCCCEETTSBHHHHHHHHHHHCCSEEEEEET-TEEEEEEEEEEHHHHHHHHHHH----TTS
T ss_pred cCCCEeeeEecchh-----heEEEcCCCCHHHHHHHHHhCCCCEEEEEEC-CCCCcEEEEEEHHHHHhHHhcC----CCC
Confidence 34578999998522 58999999999999999999999999999 4 2358999999999999877543 257
Q ss_pred ccccccc
Q 032497 130 KVGDIMT 136 (139)
Q Consensus 130 ~v~~im~ 136 (139)
+++++|.
T Consensus 87 ~v~~~m~ 93 (153)
T 3oco_A 87 KISTIMR 93 (153)
T ss_dssp BGGGTCB
T ss_pred cHHHHhC
Confidence 7899983
No 31
>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1
Probab=99.14 E-value=9.3e-11 Score=81.83 Aligned_cols=81 Identities=14% Similarity=0.196 Sum_probs=65.0
Q ss_pred CccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCC----CC
Q 032497 51 FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGR----SS 126 (139)
Q Consensus 51 ~~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~----~~ 126 (139)
+...+|+++|.+.. ++.++.+++++.+|++.|.+++++++||+ |++++++|+||.+|+++.+...+. ..
T Consensus 11 l~~~~v~~im~~~~-----~~~~v~~~~~l~~a~~~m~~~~~~~~pVv--d~~~~lvGivt~~dl~~~~~~~~~~~~~~~ 83 (159)
T 1yav_A 11 LLEATVGQFMIEAD-----KVAHVQVGNNLEHALLVLTKTGYTAIPVL--DPSYRLHGLIGTNMIMNSIFGLERIEFEKL 83 (159)
T ss_dssp CTTCBHHHHSEEGG-----GSCCEETTCBHHHHHHHHHHHCCSEEEEE--CTTCBEEEEEEHHHHHHHHBCSSSBCGGGT
T ss_pred HhHhhHHHHhCCcc-----ceEEECCCCcHHHHHHHHHhCCCcEEEEE--CCCCCEEEEeEHHHHHHHhhhhcccchhhh
Confidence 44689999998632 47899999999999999999999999999 778899999999999887632110 02
Q ss_pred ccCccccccccC
Q 032497 127 KSTKVGDIMTEE 138 (139)
Q Consensus 127 ~~~~v~~im~~~ 138 (139)
...++.++|.++
T Consensus 84 ~~~~v~~~m~~~ 95 (159)
T 1yav_A 84 DQITVEEVMLTD 95 (159)
T ss_dssp TTSBHHHHSBCS
T ss_pred ccCCHHHhcCCC
Confidence 366788888754
No 32
>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}
Probab=99.13 E-value=1.2e-10 Score=85.58 Aligned_cols=73 Identities=15% Similarity=0.223 Sum_probs=63.6
Q ss_pred CCccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHc---CCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCCCC
Q 032497 50 GFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQH---NVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSS 126 (139)
Q Consensus 50 ~~~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~---~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~~~ 126 (139)
.+...+++++|++ ++.++++++|+.+|++.|.++ +++.+||+ |++++++|+||.+|++.+ .
T Consensus 50 ~~~~~~v~~iM~~-------~~~~v~~~~tv~eal~~~~~~~~~~~~~~~Vv--d~~~~lvGivt~~dll~~-------~ 113 (205)
T 3kxr_A 50 QYSENEIGRYTDH-------QMLVLSDKATVAQAQRFFRRIELDCNDNLFIV--DEADKYLGTVRRYDIFKH-------E 113 (205)
T ss_dssp HSCTTCGGGGCBC-------CCCEEETTCBHHHHHHHHHHCCCTTCCEEEEE--CTTCBEEEEEEHHHHTTS-------C
T ss_pred CCCcchHHhhccC-------ceEEECCCCcHHHHHHHHHhhCccCeeEEEEE--cCCCeEEEEEEHHHHHhC-------C
Confidence 4567899999999 899999999999999999987 89999999 788999999999998642 1
Q ss_pred ccCccccccccC
Q 032497 127 KSTKVGDIMTEE 138 (139)
Q Consensus 127 ~~~~v~~im~~~ 138 (139)
...+++++|+++
T Consensus 114 ~~~~v~~im~~~ 125 (205)
T 3kxr_A 114 PHEPLISLLSED 125 (205)
T ss_dssp TTSBGGGGCCSS
T ss_pred CcchHHHHhcCC
Confidence 467899999764
No 33
>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*
Probab=99.11 E-value=2.1e-10 Score=81.44 Aligned_cols=67 Identities=21% Similarity=0.273 Sum_probs=55.1
Q ss_pred ccCcHHHHhhhcCCCCCCCcEEe--cCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHH
Q 032497 52 ESTTISDILKAKGKGADGSWLWC--TTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIV 121 (139)
Q Consensus 52 ~~~~v~dvm~~~~~~~~~~~~~v--~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~ 121 (139)
...+|+++|++..+. ++.++ .+++++.+|++.|.+++++++||+++|++++++|+||..|+++.+..
T Consensus 9 ~~~~v~dim~~~~~~---~~~~v~~~~~~~~~~a~~~~~~~~~~~~pVv~~d~~~~lvGiit~~dl~~~~~~ 77 (185)
T 2j9l_A 9 HKTLAMDVMKPRRND---PLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIEN 77 (185)
T ss_dssp CCCBHHHHSBSCTTS---CCCCCEESSCEEHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHH
T ss_pred ccCcHHHHhcccccC---ceEEEecCCCccHHHHHHHHHhcCCCceeEEEECCCCeEEEEEEHHHHHHHHHh
Confidence 467899999982100 16788 99999999999999999999999932257899999999999887654
No 34
>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}
Probab=99.11 E-value=2.2e-11 Score=85.18 Aligned_cols=77 Identities=16% Similarity=0.301 Sum_probs=63.3
Q ss_pred CccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCC-CceEEEEeHHHHHHHHHHcCCCCccC
Q 032497 51 FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQ-KSVAGIITERDYLRKIIVQGRSSKST 129 (139)
Q Consensus 51 ~~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~-~~lvGivt~~dll~~~~~~~~~~~~~ 129 (139)
+...+|+++|++.. ++.++++++++.+|++.|.+++++++||+ |++ ++++|+||.+|+++++. .+ ...
T Consensus 35 l~~~~v~diM~~~~-----~~~~v~~~~~i~~a~~~m~~~~~~~~pVv--d~~~~~lvGivt~~dl~~~~~-~~---~~~ 103 (156)
T 3oi8_A 35 FSDLEVRDAMITRS-----RMNVLKENDSIERITAYVIDTAHSRFPVI--GEDKDEVLGILHAKDLLKYMF-NP---EQF 103 (156)
T ss_dssp HTTCBGGGTCEEGG-----GCCCEETTCCHHHHHHHHHHHCCSEEEEE--SSSTTCEEEEEEGGGGGGGSS-CG---GGC
T ss_pred cCCCCHhheeeeHH-----HeEEECCCCCHHHHHHHHHHCCCCEEEEE--cCCCCcEEEEEEHHHHHHHHH-cC---Ccc
Confidence 45689999998632 58899999999999999999999999999 566 59999999999987542 11 367
Q ss_pred ccccccccC
Q 032497 130 KVGDIMTEE 138 (139)
Q Consensus 130 ~v~~im~~~ 138 (139)
+++++|+++
T Consensus 104 ~v~~im~~~ 112 (156)
T 3oi8_A 104 HLKSILRPA 112 (156)
T ss_dssp CHHHHCBCC
T ss_pred cHHHHcCCC
Confidence 788998764
No 35
>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}
Probab=99.09 E-value=4.4e-11 Score=84.66 Aligned_cols=58 Identities=24% Similarity=0.389 Sum_probs=53.9
Q ss_pred cCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHH
Q 032497 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII 120 (139)
Q Consensus 53 ~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~ 120 (139)
..+++++|++ ++.++++++++.+|+++|.+++++++||+ | +|+++||||.+||+++++
T Consensus 104 ~~~v~~im~~-------~~~tv~~~~~l~~a~~~m~~~~~~~lpVv--d-~g~lvGivt~~Dil~~l~ 161 (170)
T 4esy_A 104 KLTASAVMTQ-------PVVTAAPEDSVGSIADQMRRHGIHRIPVV--Q-DGVPVGIVTRRDLLKLLL 161 (170)
T ss_dssp TCBHHHHCBC-------CSCCBCTTSBHHHHHHHHHHTTCSEEEEE--E-TTEEEEEEEHHHHTTTSC
T ss_pred ccchhhhccc-------CcccCCcchhHHHHHHHHHHcCCcEEEEE--E-CCEEEEEEEHHHHHHHHH
Confidence 5689999999 89999999999999999999999999999 4 689999999999998764
No 36
>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}
Probab=99.09 E-value=1.8e-10 Score=79.92 Aligned_cols=81 Identities=16% Similarity=0.222 Sum_probs=63.5
Q ss_pred CccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcC----CCC
Q 032497 51 FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQG----RSS 126 (139)
Q Consensus 51 ~~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~----~~~ 126 (139)
+...+++++|.+.. ++.++.+++++.+|++.|.+++++++||+ |++|+++|+||.+|+++.+.... ...
T Consensus 8 l~~~~v~~im~~~~-----~~~~v~~~~~~~~a~~~m~~~~~~~~pVv--d~~~~~~Givt~~dl~~~~~~~~~~~~~~~ 80 (157)
T 2emq_A 8 FMQMTVKPFLIPAD-----KVAHVQPGNYLDHALLVLTKTGYSAIPVL--DTSYKLHGLISMTMMMDAILGLERIEFERL 80 (157)
T ss_dssp --CCBSTTTCEEGG-----GSCCBCTTSBHHHHHHHHHHSSSSEEEEE--CTTCCEEEEEEHHHHHHHSBCSSSBCGGGG
T ss_pred HhhCcHHhhccCCc-----cceEECCCCcHHHHHHHHHHCCceEEEEE--cCCCCEEEEeeHHHHHHHHhcccccchHHh
Confidence 34678999998421 48899999999999999999999999999 67899999999999987653110 011
Q ss_pred ccCccccccccC
Q 032497 127 KSTKVGDIMTEE 138 (139)
Q Consensus 127 ~~~~v~~im~~~ 138 (139)
...++.++|.++
T Consensus 81 ~~~~v~~~m~~~ 92 (157)
T 2emq_A 81 ETMKVEEVMNRN 92 (157)
T ss_dssp GTCBGGGTCBCC
T ss_pred cCCcHHHHhCCC
Confidence 356789998764
No 37
>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A
Probab=99.08 E-value=1.5e-10 Score=78.81 Aligned_cols=77 Identities=21% Similarity=0.252 Sum_probs=61.7
Q ss_pred ccCcHHH---HhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCCCCcc
Q 032497 52 ESTTISD---ILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKS 128 (139)
Q Consensus 52 ~~~~v~d---vm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~~~~~ 128 (139)
...++++ +|.+ ++.++.+++++.+|++.|.+++++++||+ |++++++|+||.+|+++.+.........
T Consensus 6 ~~~~v~~~~~~~~~-------~~~~v~~~~~~~~a~~~~~~~~~~~~~Vv--d~~~~~~Givt~~dl~~~~~~~~~~~~~ 76 (144)
T 2nyc_A 6 LKIPIGDLNIITQD-------NMKSCQMTTPVIDVIQMLTQGRVSSVPII--DENGYLINVYEAYDVLGLIKGGIYNDLS 76 (144)
T ss_dssp GGSBGGGSSCCBCS-------SCCCBCTTSBHHHHHHHHHHHTCSEEEEE--CTTCBEEEEEEHHHHHHHHHTC----CC
T ss_pred hhcchhhcCCCCCC-------CceEECCCCcHHHHHHHHHHcCcceeeEE--cCCCcEEEEEcHHHHHHHhcccccccCC
Confidence 3467888 7776 78999999999999999999999999999 6789999999999998876432112235
Q ss_pred Ccccccccc
Q 032497 129 TKVGDIMTE 137 (139)
Q Consensus 129 ~~v~~im~~ 137 (139)
.++.++|.+
T Consensus 77 ~~v~~~m~~ 85 (144)
T 2nyc_A 77 LSVGEALMR 85 (144)
T ss_dssp SBHHHHHHH
T ss_pred ccHHHHHhc
Confidence 678888864
No 38
>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}
Probab=99.07 E-value=2.8e-10 Score=81.39 Aligned_cols=76 Identities=16% Similarity=0.280 Sum_probs=61.1
Q ss_pred CCccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCC-CceEEEEeHHHHHHHHHHcCCCCcc
Q 032497 50 GFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQ-KSVAGIITERDYLRKIIVQGRSSKS 128 (139)
Q Consensus 50 ~~~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~-~~lvGivt~~dll~~~~~~~~~~~~ 128 (139)
.+...+|+++|++.. ++.++++++++.+|++.|.+++++++||+ +++ ++++|+||.+||++++... ..
T Consensus 32 ~l~~~~v~diM~~~~-----~v~~v~~~~tv~ea~~~m~~~~~~~~pVv--d~~~~~lvGivt~~Dl~~~~~~~----~~ 100 (173)
T 3ocm_A 32 TLAERSIRSIMTPRT-----DVSWVNIDDDAATIRQQLTAAPHSFFPVC--RGSLDEVVGIGRAKDLVADLITE----GR 100 (173)
T ss_dssp HHTTSCSTTTSEEGG-----GCCCEETTSCHHHHHHHHHHSSCSEEEEE--SSSTTSEEEEEEHHHHHHHHHHH----SS
T ss_pred ccCCCCHHHhCCcHH-----HeEEEeCCCCHHHHHHHHHhCCCCEEEEE--eCCCCCEEEEEEHHHHHHHHhcC----Cc
Confidence 345689999998522 58899999999999999999999999999 555 8999999999999876532 23
Q ss_pred Ccccccccc
Q 032497 129 TKVGDIMTE 137 (139)
Q Consensus 129 ~~v~~im~~ 137 (139)
.++. +|.+
T Consensus 101 ~~v~-~~~~ 108 (173)
T 3ocm_A 101 VRRN-RLRD 108 (173)
T ss_dssp CCGG-GSBC
T ss_pred chhH-hcCC
Confidence 4566 5543
No 39
>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1
Probab=99.07 E-value=2.6e-10 Score=79.45 Aligned_cols=78 Identities=12% Similarity=0.185 Sum_probs=64.1
Q ss_pred CCccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCE-EEEEecCCCCceEEEEeHHHHHHHHHHc------
Q 032497 50 GFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGA-LVVVKPGEQKSVAGIITERDYLRKIIVQ------ 122 (139)
Q Consensus 50 ~~~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~-lpVv~~d~~~~lvGivt~~dll~~~~~~------ 122 (139)
.+...+++++|++ ++.++.+++|+.+|++.|.+++++. +||+ |++ +++|+||.+|+++++...
T Consensus 12 ~~~~~~v~~im~~-------~~~~v~~~~tl~ea~~~m~~~~~~~~~~Vv--d~~-~~vGivt~~dl~~~~~~~~~~~~~ 81 (157)
T 1o50_A 12 HMKVKDVCKLISL-------KPTVVEEDTPIEEIVDRILEDPVTRTVYVA--RDN-KLVGMIPVMHLLKVSGFHFFGFIP 81 (157)
T ss_dssp TCBHHHHTTSSCC-------CCEEECTTCBHHHHHHHHHHSTTCCEEEEE--ETT-EEEEEEEHHHHHHHHHHHHHCCCC
T ss_pred hhccccHhhcccC-------CCceECCCCCHHHHHHHHHhCCCCccEEEE--ECC-EEEEEEEHHHHHHHHhhhHHhhhc
Confidence 3456789999998 8999999999999999999999999 9999 556 999999999998875421
Q ss_pred --------CCCCccCcccccccc
Q 032497 123 --------GRSSKSTKVGDIMTE 137 (139)
Q Consensus 123 --------~~~~~~~~v~~im~~ 137 (139)
.......++.++|.+
T Consensus 82 ~~~~~~~~~~~~~~~~v~~im~~ 104 (157)
T 1o50_A 82 KEELIRSSMKRLIAKNASEIMLD 104 (157)
T ss_dssp -------CCCCCSSCBHHHHCBC
T ss_pred cHHHHHHHHHHHcCCcHHHHcCC
Confidence 112246678888875
No 40
>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}
Probab=99.07 E-value=3.7e-10 Score=78.47 Aligned_cols=75 Identities=16% Similarity=0.324 Sum_probs=58.2
Q ss_pred ccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCCCCccCcc
Q 032497 52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKV 131 (139)
Q Consensus 52 ~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~~~~~~~v 131 (139)
...+++++|.+ ++.++.+++++.+|++.|.+++++.+||+ | +|+++|+||..|+++++...... ....+
T Consensus 76 ~~~~v~~~m~~-------~~~~v~~~~~l~~~~~~m~~~~~~~lpVv--d-~g~~~Giit~~dil~~l~~~~~~-~~~~~ 144 (157)
T 4fry_A 76 KATRVEEIMTA-------KVRYVEPSQSTDECMALMTEHRMRHLPVL--D-GGKLIGLISIGDLVKSVIADQQF-TISQL 144 (157)
T ss_dssp SSCBHHHHSBS-------SCCCBCTTSBHHHHHHHHHHHTCSEEEEE--E-TTEEEEEEEHHHHHHHHHTTCCC-CCC--
T ss_pred cccCHHHHcCC-------CCcEECCCCcHHHHHHHHHHcCCCEEEEE--E-CCEEEEEEEHHHHHHHHHHHHHh-hHHHH
Confidence 46789999998 79999999999999999999999999999 5 79999999999999988644332 34455
Q ss_pred cccccc
Q 032497 132 GDIMTE 137 (139)
Q Consensus 132 ~~im~~ 137 (139)
.+++..
T Consensus 145 ~~~i~~ 150 (157)
T 4fry_A 145 EHYIHG 150 (157)
T ss_dssp ------
T ss_pred HhhccC
Confidence 665543
No 41
>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}
Probab=99.07 E-value=1.1e-10 Score=82.51 Aligned_cols=58 Identities=19% Similarity=0.379 Sum_probs=52.3
Q ss_pred cCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHH
Q 032497 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (139)
Q Consensus 53 ~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~ 117 (139)
.++|+++|+++. ++.++.+++++.+|++.|.+++++++||+ |++++++|+||.+||++
T Consensus 3 ~~~v~dim~~~~-----~~~~v~~~~~l~~a~~~m~~~~~~~~pVv--d~~~~~~Givt~~dl~~ 60 (180)
T 3sl7_A 3 GYTVGDFMTPRQ-----NLHVVKPSTSVDDALELLVEKKVTGLPVI--DDNWTLVGVVSDYDLLA 60 (180)
T ss_dssp CCBHHHHSEEGG-----GCCCBCTTSBHHHHHHHHHHHTCSEEEEE--CTTCBEEEEEEHHHHTC
T ss_pred ceeHHHhcCCCC-----CceeeCCCCcHHHHHHHHHHcCCCeEEEE--CCCCeEEEEEEHHHHHh
Confidence 368999998732 47899999999999999999999999999 77899999999999974
No 42
>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}
Probab=99.06 E-value=3.4e-10 Score=78.76 Aligned_cols=76 Identities=14% Similarity=0.249 Sum_probs=61.6
Q ss_pred ccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCC--CCceEEEEeHHHHHHHHHHcCCC----
Q 032497 52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGE--QKSVAGIITERDYLRKIIVQGRS---- 125 (139)
Q Consensus 52 ~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~--~~~lvGivt~~dll~~~~~~~~~---- 125 (139)
...+++++|++ ++.++++++++.+|++.|.+++++++||+ |+ +++++|+||.+|+++.+.. +..
T Consensus 11 ~~~~v~dim~~-------~~~~v~~~~~~~~a~~~~~~~~~~~~pVv--d~~~~~~~~Givt~~dl~~~~~~-~~~~~~~ 80 (164)
T 2pfi_A 11 HHVRVEHFMNH-------SITTLAKDTPLEEVVKVVTSTDVTEYPLV--ESTESQILVGIVQRAQLVQALQA-EPPSRAP 80 (164)
T ss_dssp CSCBHHHHCBC-------CCCCEETTCBHHHHHHHHHTCCCSEEEEE--SCTTTCBEEEEEEHHHHHHHHHC--------
T ss_pred cCCCHHHHcCC-------CCeEECCCCcHHHHHHHHHhCCCCceeEE--ecCCCCEEEEEEEHHHHHHHHHh-hccccCC
Confidence 45789999998 79999999999999999999999999999 54 7999999999999887632 211
Q ss_pred CccCcccccccc
Q 032497 126 SKSTKVGDIMTE 137 (139)
Q Consensus 126 ~~~~~v~~im~~ 137 (139)
....++.++|.+
T Consensus 81 ~~~~~v~~~m~~ 92 (164)
T 2pfi_A 81 GHQQCLQDILAR 92 (164)
T ss_dssp CCCCBHHHHHHT
T ss_pred cccchhhhhhcc
Confidence 123567777764
No 43
>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}
Probab=99.05 E-value=5.9e-10 Score=75.05 Aligned_cols=59 Identities=20% Similarity=0.331 Sum_probs=53.1
Q ss_pred ccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHH
Q 032497 52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII 120 (139)
Q Consensus 52 ~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~ 120 (139)
...+++++|.+ +.++++++++.+|++.|.+++.+.+||+ |++|+++|+||..|+++.++
T Consensus 67 ~~~~v~~~m~~--------~~~v~~~~~l~~a~~~m~~~~~~~lpVv--d~~g~~~Giit~~dll~~l~ 125 (127)
T 3nqr_A 67 EAFSMDKVLRT--------AVVVPESKRVDRMLKEFRSQRYHMAIVI--DEFGGVSGLVTIEDILELIV 125 (127)
T ss_dssp CCCCHHHHCBC--------CCEEETTCBHHHHHHHHHHTTCCEEEEE--CTTSCEEEEEEHHHHHHHC-
T ss_pred CCCCHHHHcCC--------CeEECCCCcHHHHHHHHHhcCCeEEEEE--eCCCCEEEEEEHHHHHHHHh
Confidence 45789999955 6789999999999999999999999999 78899999999999998764
No 44
>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}
Probab=99.05 E-value=1.2e-10 Score=79.85 Aligned_cols=79 Identities=19% Similarity=0.307 Sum_probs=60.8
Q ss_pred cCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcC---------
Q 032497 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQG--------- 123 (139)
Q Consensus 53 ~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~--------- 123 (139)
..+++++|++.. ++.++.+++++.+|++.|.+++++++||+ |++++++|+||.+|+++.+....
T Consensus 4 ~~~v~~im~~~~-----~~~~v~~~~~~~~a~~~~~~~~~~~~~Vv--d~~~~~~G~vt~~dl~~~~~~~~~~~~~~~~~ 76 (152)
T 4gqw_A 4 VYTVGEFMTKKE-----DLHVVKPTTTVDEALELLVENRITGFPVI--DEDWKLVGLVSDYDLLALDSGDSTWKTFNAVQ 76 (152)
T ss_dssp CSBGGGTSEEST-----TCCCBCTTSBHHHHHHHHHHTTCSEEEEE--CTTCBEEEEEEHHHHTTCC----CCHHHHHHH
T ss_pred eEEhhhccCCCC-----CCeEECCCCcHHHHHHHHHHcCCceEEEE--eCCCeEEEEEEHHHHHHhhcccCcccchHHHH
Confidence 478999998732 48899999999999999999999999999 77899999999999975321000
Q ss_pred ---CCCccCccccccccC
Q 032497 124 ---RSSKSTKVGDIMTEE 138 (139)
Q Consensus 124 ---~~~~~~~v~~im~~~ 138 (139)
......++.++|.++
T Consensus 77 ~~~~~~~~~~v~~~m~~~ 94 (152)
T 4gqw_A 77 KLLSKTNGKLVGDLMTPA 94 (152)
T ss_dssp TC-----CCBHHHHSEES
T ss_pred HHHHHhccccHHHhcCCC
Confidence 011356788888764
No 45
>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1
Probab=99.04 E-value=3.1e-10 Score=86.16 Aligned_cols=63 Identities=13% Similarity=0.120 Sum_probs=55.1
Q ss_pred CccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHH
Q 032497 51 FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII 120 (139)
Q Consensus 51 ~~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~ 120 (139)
...++|+|+|++ +++++.+++++.+|+++|.+++++++|||+++++++++|+||++||++++.
T Consensus 10 ~~~~~v~diMt~-------~vvtv~~~~tv~~~~~lm~~~~~~~~PVVd~~~~~~LvGiIt~~dl~~~l~ 72 (250)
T 2d4z_A 10 KYNIQVGDIMVR-------DVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQ 72 (250)
T ss_dssp CSSCBTTSSSBS-------SCCCEETTCBHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHH
T ss_pred cCCCChHHhcCC-------CCeEECCCCCHHHHHHHHHhcCCCEEEEEecCCCCeEEEEEEHHHHHHHHH
Confidence 346789999999 899999999999999999999999999994212478999999999988754
No 46
>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}
Probab=99.04 E-value=7.8e-10 Score=74.72 Aligned_cols=59 Identities=15% Similarity=0.310 Sum_probs=53.9
Q ss_pred ccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHH
Q 032497 52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII 120 (139)
Q Consensus 52 ~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~ 120 (139)
...+++++|. ++.++++++++.+|++.|.+++.+.+||+ |++|+++|+||..|++++++
T Consensus 70 ~~~~v~~~m~--------~~~~v~~~~~l~~~~~~m~~~~~~~~~Vv--d~~g~~vGivt~~dil~~l~ 128 (130)
T 3i8n_A 70 GQKQLGAVMR--------PIQVVLNNTALPKVFDQMMTHRLQLALVV--DEYGTVLGLVTLEDIFEHLV 128 (130)
T ss_dssp TTSBHHHHSE--------ECCEEETTSCHHHHHHHHHHHTCCEEEEE--CTTSCEEEEEEHHHHHHHHH
T ss_pred CcCCHHHHhc--------CCcCcCCCCcHHHHHHHHHHcCCeEEEEE--cCCCCEEEEEEHHHHHHHHc
Confidence 3578999994 47899999999999999999999999999 78899999999999999875
No 47
>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}
Probab=99.04 E-value=7.3e-10 Score=76.33 Aligned_cols=59 Identities=20% Similarity=0.381 Sum_probs=54.5
Q ss_pred cCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHH
Q 032497 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIV 121 (139)
Q Consensus 53 ~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~ 121 (139)
..+++++| + ++.++++++++.+|++.|.+++.+.+||+ |++|+++|+||..|++++++.
T Consensus 87 ~~~v~~~m-~-------~~~~v~~~~~l~~~~~~m~~~~~~~l~Vv--d~~g~~~Giit~~dil~~l~~ 145 (148)
T 3lv9_A 87 KIELEEIL-R-------DIIYISENLTIDKALERIRKEKLQLAIVV--DEYGGTSGVVTIEDILEEIVG 145 (148)
T ss_dssp CCCGGGTC-B-------CCEEEETTSBHHHHHHHHHHHTCSEEEEE--CTTSSEEEEEEHHHHHHHHHH
T ss_pred CccHHHhc-C-------CCeEECCCCCHHHHHHHHHhcCCeEEEEE--eCCCCEEEEEEHHHHHHHHhC
Confidence 56899999 6 68999999999999999999999999999 778999999999999998753
No 48
>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*
Probab=99.03 E-value=8.4e-10 Score=82.72 Aligned_cols=75 Identities=19% Similarity=0.415 Sum_probs=64.6
Q ss_pred cCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCCCCccCccc
Q 032497 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVG 132 (139)
Q Consensus 53 ~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~~~~~~~v~ 132 (139)
..+++++|++ ++.++.+++++.+|++.|.+++++++||+ |++|+++|++|.+|+++.+.. +.. ...+++
T Consensus 83 ~~~v~~im~~-------~~~~v~~~~~~~~a~~~~~~~~~~~~~Vv--d~~~~~~Givt~~dl~~~~~~-~~~-~~~~v~ 151 (280)
T 3kh5_A 83 NEPVREIMEE-------NVITLKENADIDEAIETFLTKNVGGAPIV--NDENQLISLITERDVIRALLD-KID-ENEVID 151 (280)
T ss_dssp TSBGGGTSBC-------SCCCEETTCBHHHHHHHHHHTTCSEEEEE--CTTCBEEEEEEHHHHHHHHGG-GSC-TTCBSG
T ss_pred hhhHHHhcCC-------CCEEECCCCCHHHHHHHHHhCCCCEEEEE--cCCCEEEEEEEHHHHHHHHhh-cCC-CCCCHH
Confidence 4689999998 79999999999999999999999999999 788999999999999887643 332 345789
Q ss_pred cccccC
Q 032497 133 DIMTEE 138 (139)
Q Consensus 133 ~im~~~ 138 (139)
++|+++
T Consensus 152 ~~m~~~ 157 (280)
T 3kh5_A 152 DYITRD 157 (280)
T ss_dssp GGCBCS
T ss_pred HHhCCC
Confidence 999764
No 49
>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}
Probab=99.02 E-value=7.4e-10 Score=75.10 Aligned_cols=58 Identities=14% Similarity=0.234 Sum_probs=53.1
Q ss_pred cCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHH
Q 032497 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII 120 (139)
Q Consensus 53 ~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~ 120 (139)
..++.++| + ++.++++++++.+|++.|.+++.+.+||+ |++|+++|+||.+|++++++
T Consensus 69 ~~~v~~~m-~-------~~~~v~~~~~l~~~~~~m~~~~~~~~~Vv--d~~g~lvGiit~~Dil~~l~ 126 (130)
T 3hf7_A 69 KEIMLRAA-D-------EIYFVPEGTPLSTQLVKFQRNKKKVGLVV--DEYGDIQGLVTVEDILEEIV 126 (130)
T ss_dssp HHHHHHHS-B-------CCCEEETTCBHHHHHHHHHHHCCCEEEEE--CTTSCEEEEEEHHHHHHHHH
T ss_pred hhhHHHhc-c-------CCeEeCCCCcHHHHHHHHHhcCCeEEEEE--cCCCCEEEEeeHHHHHHHHh
Confidence 35799999 4 58999999999999999999999999999 78899999999999999875
No 50
>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}
Probab=99.02 E-value=8.6e-10 Score=75.54 Aligned_cols=61 Identities=21% Similarity=0.311 Sum_probs=55.8
Q ss_pred ccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHH
Q 032497 52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIV 121 (139)
Q Consensus 52 ~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~ 121 (139)
...++.++|.+ ++.++++++++.+|++.|.+++++.+||+ |++|+++|+||.+|+++.+..
T Consensus 83 ~~~~v~~~m~~-------~~~~v~~~~~l~~a~~~~~~~~~~~l~Vv--d~~g~~~Giit~~dil~~~~~ 143 (152)
T 4gqw_A 83 NGKLVGDLMTP-------APLVVEEKTNLEDAAKILLETKYRRLPVV--DSDGKLVGIITRGNVVRAALQ 143 (152)
T ss_dssp -CCBHHHHSEE-------SCCCEESSSBHHHHHHHHHHSSCCEEEEE--CTTSBEEEEEEHHHHHHHHHC
T ss_pred ccccHHHhcCC-------CceEECCCCcHHHHHHHHHHCCCCEEEEE--CCCCcEEEEEEHHHHHHHHHh
Confidence 35789999998 78999999999999999999999999999 778999999999999998753
No 51
>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}
Probab=99.02 E-value=9.8e-10 Score=74.21 Aligned_cols=59 Identities=14% Similarity=0.289 Sum_probs=52.8
Q ss_pred cCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHH
Q 032497 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIV 121 (139)
Q Consensus 53 ~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~ 121 (139)
..+++++|.+ +.++.+++++.+|++.|.+++.+.+||+ |++|+++|+||..|+++.++.
T Consensus 68 ~~~v~~~m~~--------~~~v~~~~~l~~~~~~m~~~~~~~~pVv--d~~g~~~Giit~~Dil~~l~g 126 (129)
T 3jtf_A 68 ALDIRSLVRP--------AVFIPEVKRLNVLLREFRASRNHLAIVI--DEHGGISGLVTMEDVLEQIVG 126 (129)
T ss_dssp TSCGGGGCBC--------CCEEETTCBHHHHHHHHHTSSCCEEEEE--CC-CCEEEEEEHHHHHHHHHH
T ss_pred CcCHHHHhCC--------CeEeCCCCcHHHHHHHHHhcCCeEEEEE--eCCCCEEEEEEHHHHHHHHhC
Confidence 4679999955 7899999999999999999999999999 778999999999999998753
No 52
>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}
Probab=99.01 E-value=9.3e-10 Score=77.62 Aligned_cols=61 Identities=20% Similarity=0.294 Sum_probs=56.5
Q ss_pred ccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHH
Q 032497 52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIV 121 (139)
Q Consensus 52 ~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~ 121 (139)
...+++++|.+ ++.++.+++++.+|++.|.+++++.+||+ |++|+++|+||.+|+++++..
T Consensus 96 ~~~~v~~~m~~-------~~~~v~~~~~l~~a~~~m~~~~~~~lpVv--d~~g~~vGiit~~dil~~~~~ 156 (180)
T 3sl7_A 96 YGKVVGDLMTP-------SPLVVRDSTNLEDAARLLLETKFRRLPVV--DADGKLIGILTRGNVVRAALQ 156 (180)
T ss_dssp TTCBHHHHSEE-------SCCCEETTSBHHHHHHHHTTSTTCEEEEE--CTTCBEEEEEEHHHHHHHHHH
T ss_pred ccccHHHHhCC-------CceEeCCCCcHHHHHHHHHHcCCCEEEEE--CCCCeEEEEEEHHHHHHHHHH
Confidence 45789999998 88999999999999999999999999999 778999999999999998764
No 53
>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}
Probab=99.00 E-value=1.2e-09 Score=77.48 Aligned_cols=59 Identities=12% Similarity=0.219 Sum_probs=54.7
Q ss_pred cCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHH
Q 032497 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIV 121 (139)
Q Consensus 53 ~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~ 121 (139)
..+++++| + ++.++++++++.+|++.|.+++++.+||+ |++|+++|+||..|++++++.
T Consensus 106 ~~~v~~im-~-------~~~~v~~~~~l~~a~~~m~~~~~~~~pVv--d~~g~lvGiit~~Dil~~l~~ 164 (172)
T 3lhh_A 106 RLELVDLV-K-------NCNFVPNSLSGMELLEHFRTTGSQMVFVV--DEYGDLKGLVTLQDMMDALTG 164 (172)
T ss_dssp CCCGGGGC-B-------CCEEEETTCCHHHHHHHHHHHTCSEEEEE--CTTSCEEEEEEHHHHHHHHHT
T ss_pred cccHHHHh-c-------CCeEeCCCCCHHHHHHHHHHcCCeEEEEE--eCCCCEEEEeeHHHHHHHHhC
Confidence 56899999 6 79999999999999999999999999999 778999999999999998863
No 54
>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}
Probab=99.00 E-value=1.1e-09 Score=76.00 Aligned_cols=59 Identities=25% Similarity=0.396 Sum_probs=54.6
Q ss_pred cCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHH
Q 032497 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIV 121 (139)
Q Consensus 53 ~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~ 121 (139)
..+++++| + ++.++.+++++.+|++.|.+++++.+||+ |++|+++|+||..|+++.+..
T Consensus 85 ~~~v~~~m-~-------~~~~v~~~~~l~~~~~~m~~~~~~~lpVv--d~~g~~vGivt~~dil~~l~~ 143 (153)
T 3oco_A 85 KAKISTIM-R-------DIVSVPENMKVPDVMEEMSAHRVPMAIVI--DEYGGTSGIITDKDVYEELFG 143 (153)
T ss_dssp TSBGGGTC-B-------CCEEEETTSBHHHHHHHHHHTTCSCEEEE--CTTSCEEEEECHHHHHHHHHC
T ss_pred CCcHHHHh-C-------CCeEECCCCCHHHHHHHHHHcCCcEEEEE--eCCCCEEEEeeHHHHHHHHhc
Confidence 56899999 6 79999999999999999999999999999 778999999999999998863
No 55
>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*
Probab=98.99 E-value=9.2e-10 Score=73.06 Aligned_cols=57 Identities=26% Similarity=0.406 Sum_probs=53.3
Q ss_pred CcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHH
Q 032497 54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKI 119 (139)
Q Consensus 54 ~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~ 119 (139)
.+++++|.+ ++.++++++++.+|++.|.+++.+.+||+ |++|+++|+||..|+++++
T Consensus 62 ~~v~~~~~~-------~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv--d~~g~~~Givt~~dl~~~l 118 (122)
T 3kpb_A 62 KTIEEIMTR-------NVITAHEDEPVDHVAIKMSKYNISGVPVV--DDYRRVVGIVTSEDISRLF 118 (122)
T ss_dssp CBGGGTSBS-------SCCCEETTSBHHHHHHHHHHHTCSEEEEE--CTTCBEEEEEEHHHHHHHH
T ss_pred cCHHHHhcC-------CCeEECCCCCHHHHHHHHHHhCCCeEEEE--CCCCCEEEEEeHHHHHHHh
Confidence 479999998 79999999999999999999999999999 7789999999999999876
No 56
>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*
Probab=98.98 E-value=9.8e-10 Score=81.91 Aligned_cols=60 Identities=10% Similarity=0.124 Sum_probs=55.5
Q ss_pred cCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHH
Q 032497 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIV 121 (139)
Q Consensus 53 ~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~ 121 (139)
..+|+|+|++ ++.++.+++++.+|++.|.+++++++||+ |++|+++|++|..|+++++..
T Consensus 6 ~~~v~~im~~-------~~~~v~~~~~~~~a~~~m~~~~~~~lpVv--d~~~~l~Giit~~di~~~~~~ 65 (245)
T 3l2b_A 6 KLKVEDLEMD-------KIAPLAPEVSLKMAWNIMRDKNLKSIPVA--DGNNHLLGMLSTSNITATYMD 65 (245)
T ss_dssp CCBGGGSCCB-------CCCCBCTTCBHHHHHHHHHHTTCSEEEEE--CTTCBEEEEEEHHHHHHHHHC
T ss_pred cCcHHHhcCC-------CCcEECCCCcHHHHHHHHHHcCCCEEEEE--cCCCEEEEEEEHHHHHHHHHH
Confidence 4689999998 89999999999999999999999999999 778999999999999988753
No 57
>2uv4_A 5'-AMP-activated protein kinase subunit gamma-1; transferase, CBS domain, lipid synthesis, fatty acid biosynthesis; HET: AMP; 1.33A {Homo sapiens} PDB: 2uv5_A* 2uv6_A* 2uv7_A*
Probab=98.98 E-value=1.1e-09 Score=75.89 Aligned_cols=73 Identities=25% Similarity=0.252 Sum_probs=59.4
Q ss_pred cCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCCCCccCccc
Q 032497 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVG 132 (139)
Q Consensus 53 ~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~~~~~~~v~ 132 (139)
..+++++ + ++.++.+++++.+|++.|.+++++++||+ |++|+++|+||.+|+++.+........+.++.
T Consensus 22 ~~~v~~~--~-------~~~~v~~~~~~~~a~~~m~~~~~~~~pVv--d~~~~~vGivt~~dl~~~~~~~~~~~~~~~v~ 90 (152)
T 2uv4_A 22 ELQIGTY--A-------NIAMVRTTTPVYVALGIFVQHRVSALPVV--DEKGRVVDIYSKFDVINLAAEKTYNNLDVSVT 90 (152)
T ss_dssp HHTCSBC--S-------SCCCEETTCBHHHHHHHHHHHCCSEEEEE--CTTSBEEEEEEHHHHHHHHHCSSCCCTTSBGG
T ss_pred HccCCcc--C-------CceEeCCCCcHHHHHHHHHHcCCceEeEE--CCCCcEEEEEeHHHHHHHhcchhhhhhcchHH
Confidence 3556666 4 68999999999999999999999999999 67899999999999988764332222467789
Q ss_pred cccc
Q 032497 133 DIMT 136 (139)
Q Consensus 133 ~im~ 136 (139)
++|.
T Consensus 91 ~~m~ 94 (152)
T 2uv4_A 91 KALQ 94 (152)
T ss_dssp GGGG
T ss_pred HHHh
Confidence 9985
No 58
>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1
Probab=98.96 E-value=1.4e-09 Score=72.37 Aligned_cols=59 Identities=19% Similarity=0.345 Sum_probs=54.1
Q ss_pred ccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHH
Q 032497 52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII 120 (139)
Q Consensus 52 ~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~ 120 (139)
...+++++|.+ ++.++++++++.+|++.|.+++.+.+||+ |+ |+++|+||..|+++++.
T Consensus 63 ~~~~v~~~m~~-------~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv--d~-~~~~Gvit~~dl~~~l~ 121 (125)
T 1pbj_A 63 AEVKVWEVMER-------DLVTISPRATIKEAAEKMVKNVVWRLLVE--ED-DEIIGVISATDILRAKM 121 (125)
T ss_dssp TTSBHHHHCBC-------GGGEECTTSCHHHHHHHHHHHTCSEEEEE--ET-TEEEEEEEHHHHHHHHC
T ss_pred cccCHHHHcCC-------CCeEECCCCCHHHHHHHHHhcCCcEEEEE--EC-CEEEEEEEHHHHHHHHH
Confidence 46789999998 79999999999999999999999999999 55 99999999999998763
No 59
>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}
Probab=98.95 E-value=1e-09 Score=74.83 Aligned_cols=59 Identities=19% Similarity=0.357 Sum_probs=53.0
Q ss_pred ccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHH
Q 032497 52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII 120 (139)
Q Consensus 52 ~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~ 120 (139)
...+++++|++ +.++.+++++.+|++.|.+++++.+||+ |++|+++|+||.+|+++.+.
T Consensus 68 ~~~~v~~~m~~--------~~~v~~~~~l~~~~~~m~~~~~~~~~Vv--d~~g~lvGiit~~Dil~~l~ 126 (136)
T 3lfr_A 68 DSDDVKKLLRP--------ATFVPESKRLNVLLREFRANHNHMAIVI--DEYGGVAGLVTIEDVLEQIV 126 (136)
T ss_dssp GGCCGGGTCBC--------CCEEETTCBHHHHHHHHHHHTCCEEEEE--CTTSCEEEEEEHHHHHTTC-
T ss_pred CCcCHHHHcCC--------CeEECCCCcHHHHHHHHHhcCCeEEEEE--eCCCCEEEEEEHHHHHHHHh
Confidence 35689999965 7899999999999999999999999999 78899999999999988764
No 60
>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1
Probab=98.95 E-value=1.2e-09 Score=84.01 Aligned_cols=73 Identities=22% Similarity=0.403 Sum_probs=63.3
Q ss_pred CCccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHc-----CCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCC
Q 032497 50 GFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQH-----NVGALVVVKPGEQKSVAGIITERDYLRKIIVQGR 124 (139)
Q Consensus 50 ~~~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~-----~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~ 124 (139)
.+...+++++|++ +++++.+++|+.+|++.|.++ +++++||+ |++++++|+||.+|++++
T Consensus 133 ~~~~~~v~~iM~~-------~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~pVv--d~~~~lvGivt~~dll~~------ 197 (286)
T 2oux_A 133 HYEDETAGAIMTT-------EFVSIVANQTVRSAMYVLKNQADMAETIYYVYVV--DQENHLVGVISLRDLIVN------ 197 (286)
T ss_dssp TSCTTBHHHHCBS-------CCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEE--CTTCBEEEEEEHHHHTTS------
T ss_pred cCChHHHHHhCCC-------CceEECCCCcHHHHHHHHHHcccCccceeEEEEE--cCCCeEEEEEEHHHHHcC------
Confidence 4567899999998 899999999999999999987 88889999 778999999999999653
Q ss_pred CCccCccccccccC
Q 032497 125 SSKSTKVGDIMTEE 138 (139)
Q Consensus 125 ~~~~~~v~~im~~~ 138 (139)
..+.++.++|.++
T Consensus 198 -~~~~~v~~im~~~ 210 (286)
T 2oux_A 198 -DDDTLIADILNER 210 (286)
T ss_dssp -CTTSBHHHHSBSC
T ss_pred -CCCCcHHHHcCCC
Confidence 1467889999754
No 61
>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}
Probab=98.95 E-value=6.4e-10 Score=74.85 Aligned_cols=58 Identities=10% Similarity=0.224 Sum_probs=54.1
Q ss_pred CcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHH
Q 032497 54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII 120 (139)
Q Consensus 54 ~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~ 120 (139)
.+++++|.+ ++.++.+++++.+|++.|.+++.+.+||+ |++|+++|+||..|+++++.
T Consensus 68 ~~v~~~m~~-------~~~~v~~~~~l~~~~~~~~~~~~~~lpVv--d~~g~~~Giit~~dll~~l~ 125 (128)
T 3gby_A 68 EKLGEELLE-------TVRSYRPGEQLFDNLISVAAAKCSVVPLA--DEDGRYEGVVSRKRILGFLA 125 (128)
T ss_dssp CBCCGGGCB-------CCCCBCTTSBGGGSHHHHHHCSSSEEEEE--CTTCBEEEEEEHHHHHHHHH
T ss_pred CcHHHHccC-------CCcEECCCCCHHHHHHHHHhCCCcEEEEE--CCCCCEEEEEEHHHHHHHHH
Confidence 579999998 78999999999999999999999999999 78899999999999998763
No 62
>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1
Probab=98.95 E-value=1.6e-09 Score=72.96 Aligned_cols=60 Identities=30% Similarity=0.377 Sum_probs=55.3
Q ss_pred cCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHH
Q 032497 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIV 121 (139)
Q Consensus 53 ~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~ 121 (139)
..++.++|.+ ++.++++++++.+|++.|.+++.+.+||+ |++|+++|+||..|+++.+..
T Consensus 66 ~~~v~~~~~~-------~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv--d~~g~~~Giit~~dll~~~~~ 125 (133)
T 2ef7_A 66 ETKAEEFMTA-------SLITIREDSPITGALALMRQFNIRHLPVV--DDKGNLKGIISIRDITRAIDD 125 (133)
T ss_dssp TCBGGGTSEE-------CCCCEETTSBHHHHHHHHHHHTCSEEEEE--CTTSCEEEEEEHHHHHHHHHH
T ss_pred ccCHHHHcCC-------CCEEECCCCCHHHHHHHHHHcCCCEEEEE--CCCCeEEEEEEHHHHHHHHHH
Confidence 4689999998 78999999999999999999999999999 778999999999999988754
No 63
>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}
Probab=98.94 E-value=7e-10 Score=77.94 Aligned_cols=59 Identities=20% Similarity=0.256 Sum_probs=54.3
Q ss_pred ccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHH
Q 032497 52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII 120 (139)
Q Consensus 52 ~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~ 120 (139)
...++.++|.+ ++.++.+++++.+|++.|.+++++.+||+ |+ |+++|+||..|+++++.
T Consensus 91 ~~~~v~~~m~~-------~~~~v~~~~~l~~a~~~m~~~~~~~lpVv--d~-g~~~Giit~~dil~~~~ 149 (165)
T 3fhm_A 91 LQQSVSVAMTK-------NVVRCQHNSTTDQLMEIMTGGRFRHVPVE--EN-GRLAGIISIGDVVKARI 149 (165)
T ss_dssp GTSBGGGTSBS-------SCCCBCTTCBHHHHHHHHHHHTCSEEEEE--ET-TEEEEEEEHHHHHHHTT
T ss_pred ccCCHHHHhcC-------CCeEECCCCcHHHHHHHHHHcCCCEEEEE--EC-CEEEEEEEHHHHHHHHH
Confidence 45789999998 79999999999999999999999999999 56 99999999999998864
No 64
>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}
Probab=98.94 E-value=9.5e-10 Score=77.32 Aligned_cols=59 Identities=22% Similarity=0.317 Sum_probs=53.0
Q ss_pred ccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHH
Q 032497 52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIV 121 (139)
Q Consensus 52 ~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~ 121 (139)
...++.++|++ ++.++++++++.+|++.|.++++ +||+ |++|+++|+||.+|+++++..
T Consensus 84 ~~~~v~~im~~-------~~~~v~~~~~l~~~~~~m~~~~~--lpVV--d~~g~l~GiiT~~Dil~~~~~ 142 (156)
T 3k6e_A 84 ADTDIVHMTKT-------DVAVVSPDFTITEVLHKLVDESF--LPVV--DAEGIFQGIITRKSILKAVNA 142 (156)
T ss_dssp TTSBGGGTCBC-------SCCCBCTTCCHHHHHHHTTTSSE--EEEE--CTTSBEEEEEEHHHHHHHHHH
T ss_pred cccCHHHhhcC-------CceecccccHHHHHHHHHHHcCC--eEEE--ecCCEEEEEEEHHHHHHHHHH
Confidence 35789999998 89999999999999999998764 9999 789999999999999998743
No 65
>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}
Probab=98.94 E-value=2e-09 Score=79.07 Aligned_cols=61 Identities=16% Similarity=0.163 Sum_probs=56.2
Q ss_pred ccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHH
Q 032497 52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIV 121 (139)
Q Consensus 52 ~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~ 121 (139)
...+++++|++ ++.++++++++.+|++.|.++++..+||+ |++|+++|+||..|+++.+..
T Consensus 114 ~~~~v~~im~~-------~~~~v~~~~~l~~a~~~m~~~~~~~lpVV--D~~g~lvGiIT~~Dil~~i~~ 174 (205)
T 3kxr_A 114 PHEPLISLLSE-------DSRALTANTTLLDAAEAIEHSREIELPVI--DDAGELIGRVTLRAATALVRE 174 (205)
T ss_dssp TTSBGGGGCCS-------SCCCEETTSCHHHHHHHHHTSSCSEEEEE--CTTSBEEEEEEHHHHHHHHHH
T ss_pred CcchHHHHhcC-------CCeEECCCCCHHHHHHHHHhcCCCEEEEE--cCCCeEEEEEEHHHHHHHHHH
Confidence 45789999998 79999999999999999999999999999 788999999999999988754
No 66
>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}
Probab=98.93 E-value=2.9e-09 Score=72.03 Aligned_cols=60 Identities=28% Similarity=0.471 Sum_probs=54.1
Q ss_pred ccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcC-----CCEEEEEecCCCCceEEEEeHHHHHHHHH
Q 032497 52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHN-----VGALVVVKPGEQKSVAGIITERDYLRKII 120 (139)
Q Consensus 52 ~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~-----~~~lpVv~~d~~~~lvGivt~~dll~~~~ 120 (139)
...+++++|.+ ++.++++++++.+|++.|.+++ .+.+||+ |++|+++|+||..|+++.+.
T Consensus 71 ~~~~v~~~m~~-------~~~~v~~~~~l~~~~~~~~~~~~~~~~~~~l~Vv--d~~g~~~Giit~~dll~~~~ 135 (138)
T 2p9m_A 71 LETTIGDVMTK-------DVITIHEDASILEAIKKMDISGKKEEIINQLPVV--DKNNKLVGIISDGDIIRTIS 135 (138)
T ss_dssp SSCBHHHHSCS-------SCCCEETTSBHHHHHHHHTCC-----CCCEEEEE--CTTSBEEEEEEHHHHHHHHH
T ss_pred CCcCHHHHhCC-------CcEEECCCCCHHHHHHHHHhcCCccccccEEEEE--CCCCeEEEEEEHHHHHHHHH
Confidence 45789999998 7899999999999999999999 9999999 67899999999999998764
No 67
>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A
Probab=98.92 E-value=5.3e-09 Score=71.03 Aligned_cols=66 Identities=20% Similarity=0.357 Sum_probs=53.8
Q ss_pred cCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHH
Q 032497 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIV 121 (139)
Q Consensus 53 ~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~ 121 (139)
..++.++|.+.... ..++.++.+++++.+|++.|.+++.+.+||+ |++|+++|+||..|+++.+..
T Consensus 76 ~~~v~~~m~~~~~~-~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vv--d~~g~~~Giit~~dil~~l~~ 141 (144)
T 2nyc_A 76 SLSVGEALMRRSDD-FEGVYTCTKNDKLSTIMDNIRKARVHRFFVV--DDVGRLVGVLTLSDILKYILL 141 (144)
T ss_dssp CSBHHHHHHHCC-------CEECTTSBHHHHHHHHHHHTCSEEEEE--CTTSBEEEEEEHHHHHHHHHH
T ss_pred CccHHHHHhcCccc-cCCCeEECCCCcHHHHHHHHHHCCCCEEEEE--CCCCCEEEEEEHHHHHHHHHh
Confidence 56899999862000 0037899999999999999999999999999 778999999999999998754
No 68
>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1
Probab=98.92 E-value=1.2e-09 Score=80.29 Aligned_cols=70 Identities=13% Similarity=0.183 Sum_probs=61.0
Q ss_pred cCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCCCCccCccc
Q 032497 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVG 132 (139)
Q Consensus 53 ~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~~~~~~~v~ 132 (139)
..+++++|.+ ++.++.+++|+.+|++.|.+++++++||+ |++++++|+||.+|+++.. .+.++.
T Consensus 12 ~~~~~~~~~~-------~~~~v~~~~tv~ea~~~m~~~~~~~~pVv--d~~~~l~Givt~~dl~~~~-------~~~~v~ 75 (213)
T 1vr9_A 12 HMKVKKWVTQ-------DFPMVEESATVRECLHRMRQYQTNECIVK--DREGHFRGVVNKEDLLDLD-------LDSSVF 75 (213)
T ss_dssp -CBGGGGCBS-------CSCEEETTCBHHHHHHHHHHTTSSEEEEE--CTTSBEEEEEEGGGGTTSC-------TTSBSG
T ss_pred ccCHHHhhcC-------CCeEECCCCcHHHHHHHHHHCCCCEEEEE--cCCCEEEEEEEHHHHHhhc-------CCCcHH
Confidence 3679999999 89999999999999999999999999999 6789999999999996532 256789
Q ss_pred cccccC
Q 032497 133 DIMTEE 138 (139)
Q Consensus 133 ~im~~~ 138 (139)
++|+++
T Consensus 76 ~im~~~ 81 (213)
T 1vr9_A 76 NKVSLP 81 (213)
T ss_dssp GGCBCT
T ss_pred HHccCC
Confidence 999764
No 69
>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1
Probab=98.91 E-value=1.8e-09 Score=73.07 Aligned_cols=59 Identities=20% Similarity=0.352 Sum_probs=54.5
Q ss_pred ccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHH
Q 032497 52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII 120 (139)
Q Consensus 52 ~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~ 120 (139)
...++.++|.+ ++.++++++++.+|++.|.+++.+.+||+ | +|+++|+||..|+++++.
T Consensus 72 ~~~~v~~~m~~-------~~~~v~~~~~l~~~~~~m~~~~~~~lpVv--d-~g~~~Giit~~dll~~~~ 130 (135)
T 2rc3_A 72 KDTQVKEIMTR-------QVAYVDLNNTNEDCMALITEMRVRHLPVL--D-DGKVIGLLSIGDLVKDAI 130 (135)
T ss_dssp GGSBGGGTSBC-------SCCCBCTTCBHHHHHHHHHHHTCSEEEEE--E-TTEEEEEEEHHHHHHHHH
T ss_pred ccCCHHHhccC-------CCeEECCCCcHHHHHHHHHHhCCCEEEEE--e-CCEEEEEEEHHHHHHHHH
Confidence 45789999998 79999999999999999999999999999 5 689999999999998774
No 70
>2uv4_A 5'-AMP-activated protein kinase subunit gamma-1; transferase, CBS domain, lipid synthesis, fatty acid biosynthesis; HET: AMP; 1.33A {Homo sapiens} PDB: 2uv5_A* 2uv6_A* 2uv7_A*
Probab=98.91 E-value=4.4e-09 Score=72.76 Aligned_cols=58 Identities=26% Similarity=0.445 Sum_probs=53.1
Q ss_pred cCcHHHHhh------hcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHH
Q 032497 53 STTISDILK------AKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKI 119 (139)
Q Consensus 53 ~~~v~dvm~------~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~ 119 (139)
..++.++|. + ++.++.+++++.+|++.|.+++.+.+||+ |++|+++|+||..|+++++
T Consensus 86 ~~~v~~~m~~~~~~~~-------~~~~v~~~~~l~~a~~~m~~~~~~~lpVv--d~~g~~vGiit~~dil~~l 149 (152)
T 2uv4_A 86 DVSVTKALQHRSHYFE-------GVLKCYLHETLETIINRLVEAEVHRLVVV--DENDVVKGIVSLSDILQAL 149 (152)
T ss_dssp TSBGGGGGGTCCHHHH-------TCSEECTTSBHHHHHHHHHHHTCSEEEEE--CTTSBEEEEEEHHHHHHHH
T ss_pred cchHHHHHhhhhcccC-------CCeEECCCCcHHHHHHHHHHcCCeEEEEE--CCCCeEEEEEEHHHHHHHH
Confidence 467899996 5 68999999999999999999999999999 6789999999999999876
No 71
>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1
Probab=98.90 E-value=1.4e-09 Score=82.76 Aligned_cols=74 Identities=24% Similarity=0.300 Sum_probs=63.6
Q ss_pred cCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCCCCccCccc
Q 032497 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVG 132 (139)
Q Consensus 53 ~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~~~~~~~v~ 132 (139)
..+++++|++ ++.++.+++++.+|++.|.+++++++||+ |++++++|++|.+|+++.+. ... ...+++
T Consensus 92 ~~~v~~im~~-------~~~~v~~~~~~~~a~~~m~~~~~~~lpVv--d~~~~lvGivt~~dl~~~~~-~~~--~~~~v~ 159 (296)
T 3ddj_A 92 TTPIIDYMTP-------NPVTVYNTSDEFTAINIMVTRNFGSLPVV--DINDKPVGIVTEREFLLLYK-DLD--EIFPVK 159 (296)
T ss_dssp TSBGGGTSEE-------SCCCEETTSCHHHHHHHHHHHTCSEEEEE--CTTSCEEEEEEHHHHGGGGG-GSC--CCCBHH
T ss_pred cccHHHhccC-------CCEEEcCCCCHHHHHHHHHHcCCCEEEEE--cCCCcEEEEEeHHHHHHhhh-ccc--ccccHH
Confidence 5689999998 79999999999999999999999999999 77899999999999987652 222 356889
Q ss_pred cccccC
Q 032497 133 DIMTEE 138 (139)
Q Consensus 133 ~im~~~ 138 (139)
++|+++
T Consensus 160 ~~m~~~ 165 (296)
T 3ddj_A 160 VFMSTK 165 (296)
T ss_dssp HHSBCS
T ss_pred HhhcCC
Confidence 998754
No 72
>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0
Probab=98.90 E-value=3.9e-09 Score=72.61 Aligned_cols=59 Identities=20% Similarity=0.312 Sum_probs=53.6
Q ss_pred ccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHH
Q 032497 52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIV 121 (139)
Q Consensus 52 ~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~ 121 (139)
...++.++|.+ ++.++.+++++.+|++.|.++++ +||+ |++|+++|+||..|+++.+..
T Consensus 85 ~~~~v~~~m~~-------~~~~v~~~~~l~~a~~~~~~~~~--l~Vv--d~~g~~~Giit~~dil~~l~~ 143 (150)
T 3lqn_A 85 EEMKVEQVMKQ-------DIPVLKLEDSFAKALEMTIDHPF--ICAV--NEDGYFEGILTRRAILKLLNK 143 (150)
T ss_dssp GGCBGGGTCBS-------SCCEEETTCBHHHHHHHHHHCSE--EEEE--CTTCBEEEEEEHHHHHHHHHH
T ss_pred hcCCHHHHhcC-------CCceeCCCCCHHHHHHHHHhCCE--EEEE--CCCCcEEEEEEHHHHHHHHHH
Confidence 35789999998 89999999999999999999987 9999 778999999999999998754
No 73
>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C
Probab=98.89 E-value=9.4e-10 Score=84.62 Aligned_cols=77 Identities=19% Similarity=0.247 Sum_probs=64.3
Q ss_pred ccCcHHHH---hhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCCCCcc
Q 032497 52 ESTTISDI---LKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKS 128 (139)
Q Consensus 52 ~~~~v~dv---m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~~~~~ 128 (139)
...+++++ |.+ ++.++.+++++.+|++.|.+++++++||+ |++|+++|+||.+|+++.+........+
T Consensus 185 ~~~~v~~~~~~m~~-------~~~~v~~~~~~~~~~~~m~~~~~~~~pVv--d~~~~~~Giit~~dl~~~~~~~~~~~~~ 255 (323)
T 3t4n_C 185 LKIPIGDLNIITQD-------NMKSCQMTTPVIDVIQMLTQGRVSSVPII--DENGYLINVYEAYDVLGLIKGGIYNDLS 255 (323)
T ss_dssp CCSBGGGTTCSBCT-------TCCCBCTTSBHHHHHHHHHHHTCSEEEEE--CTTCBEEEEEETTHHHHHHHTTHHHHTT
T ss_pred hhCcHHHcCCCCCC-------CcEEECCCCcHHHHHHHHHHcCCCEEEEE--CCCCeEEEEEeHHHHHHHHhhchhhhcc
Confidence 34689999 877 79999999999999999999999999999 7789999999999999876432111235
Q ss_pred Ccccccccc
Q 032497 129 TKVGDIMTE 137 (139)
Q Consensus 129 ~~v~~im~~ 137 (139)
.++.++|++
T Consensus 256 ~~v~~~m~~ 264 (323)
T 3t4n_C 256 LSVGEALMR 264 (323)
T ss_dssp SBHHHHGGG
T ss_pred CCHHHHHhh
Confidence 688899876
No 74
>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1
Probab=98.89 E-value=4.6e-09 Score=73.43 Aligned_cols=59 Identities=22% Similarity=0.390 Sum_probs=54.1
Q ss_pred ccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHH
Q 032497 52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII 120 (139)
Q Consensus 52 ~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~ 120 (139)
...++.++|.+ ++.++.+++++.+|++.|.+++.+.+||+ |+ |+++|+||..||++.+.
T Consensus 76 ~~~~v~~im~~-------~~~~v~~~~~l~~a~~~m~~~~~~~lpVv--d~-g~lvGiit~~dil~~~~ 134 (160)
T 2o16_A 76 FETPLFEVMHT-------DVTSVAPQAGLKESAIYMQKHKIGCLPVV--AK-DVLVGIITDSDFVTIAI 134 (160)
T ss_dssp CCCBHHHHSCS-------CEEEBCTTSBHHHHHHHHHHTTCSCEEEE--ET-TEEEEEECHHHHHHHHH
T ss_pred cccCHHHHhcC-------CCeEECCCCCHHHHHHHHHHhCCCEEEEE--EC-CEEEEEEEHHHHHHHHH
Confidence 45789999998 89999999999999999999999999999 45 99999999999998754
No 75
>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A
Probab=98.89 E-value=2.5e-09 Score=72.94 Aligned_cols=57 Identities=25% Similarity=0.298 Sum_probs=52.6
Q ss_pred cCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHH
Q 032497 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKI 119 (139)
Q Consensus 53 ~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~ 119 (139)
..++.++|.+ ++.++.++ ++.+|++.|.+++.+.+||+ |++|+++|+||..|+++++
T Consensus 70 ~~~v~~~m~~-------~~~~v~~~-~l~~a~~~m~~~~~~~l~Vv--d~~g~~~Giit~~dll~~~ 126 (141)
T 2rih_A 70 DGPAMPIANS-------PITVLDTD-PVHVAAEKMRRHNIRHVVVV--NKNGELVGVLSIRDLCFER 126 (141)
T ss_dssp TSBSGGGCBC-------CCEEETTS-BHHHHHHHHHHHTCSEEEEE--CTTSCEEEEEEHHHHHSCH
T ss_pred CCCHHHHcCC-------CCeEEcCC-CHHHHHHHHHHcCCeEEEEE--cCCCcEEEEEEHHHHHHHH
Confidence 5689999998 89999999 99999999999999999999 7789999999999997654
No 76
>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A
Probab=98.88 E-value=2.7e-09 Score=71.88 Aligned_cols=58 Identities=22% Similarity=0.476 Sum_probs=53.0
Q ss_pred ccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHH
Q 032497 52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKI 119 (139)
Q Consensus 52 ~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~ 119 (139)
...+++++|.+ ++.++++++++.+|++.|.+++.+.+||+ |+ |+++|+||..|+++.+
T Consensus 72 ~~~~v~~~m~~-------~~~~v~~~~~l~~~~~~m~~~~~~~l~Vv--d~-g~~~Giit~~dil~~l 129 (133)
T 1y5h_A 72 NTATAGELARD-------SIYYVDANASIQEMLNVMEEHQVRRVPVI--SE-HRLVGIVTEADIARHL 129 (133)
T ss_dssp TTSBHHHHHTT-------CCCCEETTCCHHHHHHHHHHHTCSEEEEE--ET-TEEEEEEEHHHHHHTC
T ss_pred cccCHHHHhcC-------CCEEECCCCCHHHHHHHHHHcCCCEEEEE--EC-CEEEEEEEHHHHHHHH
Confidence 35789999998 79999999999999999999999999999 45 8999999999998764
No 77
>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A
Probab=98.87 E-value=5.8e-09 Score=79.53 Aligned_cols=72 Identities=18% Similarity=0.362 Sum_probs=62.3
Q ss_pred CccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHc-----CCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCCC
Q 032497 51 FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQH-----NVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRS 125 (139)
Q Consensus 51 ~~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~-----~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~~ 125 (139)
+...+++++|++ ++.++.+++|+.+|++.|.++ ++.++||+ |++++++|+||.+|++.+
T Consensus 132 ~~~~~v~~iM~~-------~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~~Vv--d~~~~lvGivt~~dll~~------- 195 (278)
T 2yvy_A 132 YEEDEAGGLMTP-------EYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVV--DEKGRLKGVLSLRDLIVA------- 195 (278)
T ss_dssp SCTTBGGGTCBS-------CCCEECTTSBHHHHHHHHHHHTTTCSCSSEEEEE--CTTCBEEEEEEHHHHHHS-------
T ss_pred CCcchHHhhcCC-------CceEECCCCcHHHHHHHHHHccCCccceeEEEEE--CCCCCEEEEEEHHHHhcC-------
Confidence 456789999998 899999999999999999987 78999999 778999999999999753
Q ss_pred CccCccccccccC
Q 032497 126 SKSTKVGDIMTEE 138 (139)
Q Consensus 126 ~~~~~v~~im~~~ 138 (139)
....++.++|.++
T Consensus 196 ~~~~~v~~im~~~ 208 (278)
T 2yvy_A 196 DPRTRVAEIMNPK 208 (278)
T ss_dssp CTTCBSTTTSBSS
T ss_pred CCCCcHHHHhCCC
Confidence 1467899999654
No 78
>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*
Probab=98.87 E-value=1.9e-09 Score=80.31 Aligned_cols=57 Identities=21% Similarity=0.302 Sum_probs=49.3
Q ss_pred cCcHHHHhh-hcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHH
Q 032497 53 STTISDILK-AKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRK 118 (139)
Q Consensus 53 ~~~v~dvm~-~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~ 118 (139)
..+++++|+ + ++.++++++++.+|++.|.+++++.+||+ |++|+++|+||.+|++++
T Consensus 184 ~~~v~~im~~~-------~~~~~~~~~~~~~~~~~m~~~~~~~~pVv--d~~~~~~Giit~~dll~~ 241 (245)
T 3l2b_A 184 SLPVDYVMTKD-------NLVAVSTDDLVEDVKVTMSETRYSNYPVI--DENNKVVGSIARFHLIST 241 (245)
T ss_dssp GSBHHHHSBCT-------TCCCEETTSBHHHHHHHHHHHCCSEEEEE--CTTCBEEEEEECC-----
T ss_pred CCceeeEecCC-------ccEEECCCCcHHHHHHHHHhcCCceEEEE--cCCCeEEEEEEHHHhhch
Confidence 578999999 6 79999999999999999999999999999 778999999999999875
No 79
>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1
Probab=98.87 E-value=7.1e-09 Score=72.07 Aligned_cols=59 Identities=20% Similarity=0.312 Sum_probs=54.0
Q ss_pred ccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHH
Q 032497 52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII 120 (139)
Q Consensus 52 ~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~ 120 (139)
...++.++|.+ +.++++++++.+|++.|.+++++.+||+ |++|+++|+||..|+++.+.
T Consensus 94 ~~~~v~~im~~--------~~~v~~~~~l~~a~~~m~~~~~~~lpVv--d~~g~~vGiit~~dll~~l~ 152 (157)
T 1o50_A 94 IAKNASEIMLD--------PVYVHMDTPLEEALKLMIDNNIQEMPVV--DEKGEIVGDLNSLEILLALW 152 (157)
T ss_dssp SSCBHHHHCBC--------CCCBCTTSBHHHHHHHHHHHTCSEEEEE--CTTSCEEEEEEHHHHHHHHH
T ss_pred cCCcHHHHcCC--------CeEECCCCCHHHHHHHHHHCCCcEEEEE--cCCCEEEEEEEHHHHHHHHH
Confidence 45789999987 6889999999999999999999999999 67899999999999998875
No 80
>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}
Probab=98.85 E-value=9.5e-09 Score=71.30 Aligned_cols=65 Identities=17% Similarity=0.148 Sum_probs=53.6
Q ss_pred cCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHH
Q 032497 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIV 121 (139)
Q Consensus 53 ~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~ 121 (139)
..++.++|.+.... .+.+.++.+++++.+|++.|.+++.+++||+ | +|+++|+||..|+++++..
T Consensus 83 ~~~v~~~m~~~~~~-~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVv--d-~g~l~Giit~~dil~~~~~ 147 (164)
T 2pfi_A 83 QQCLQDILARGCPT-EPVTLTLFSETTLHQAQNLFKLLNLQSLFVT--S-RGRAVGCVSWVEMKKAISN 147 (164)
T ss_dssp CCBHHHHHHTTCCC-BCCCCCEETTCBHHHHHHHHHHTTCSEEEEE--E-TTEEEEEEEHHHHHHHHHH
T ss_pred cchhhhhhcccccc-cCCceEECCCCcHHHHHHHHHHhCCCEEEEE--E-CCEEEEEEEHHHHHHHHHh
Confidence 46799999871000 0017889999999999999999999999999 5 7899999999999988754
No 81
>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1
Probab=98.83 E-value=2.1e-09 Score=80.78 Aligned_cols=59 Identities=19% Similarity=0.331 Sum_probs=54.2
Q ss_pred ccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHH
Q 032497 52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKI 119 (139)
Q Consensus 52 ~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~ 119 (139)
...+++++|++ ++.++.+++++.+|++.|.+++++++||+ |++|+++|+||.+|+++++
T Consensus 219 ~~~~v~~im~~-------~~~~v~~~~~l~~a~~~m~~~~~~~lpVv--d~~~~lvGiit~~Dil~~~ 277 (282)
T 2yzq_A 219 PNKPVAEIMTR-------DVIVATPHMTVHEVALKMAKYSIEQLPVI--RGEGDLIGLIRDFDLLKVL 277 (282)
T ss_dssp CCCBGGGTCBS-------SCCCBCTTSBHHHHHHHHHHHTCSEEEEE--ETTTEEEEEEEHHHHGGGG
T ss_pred ccCCHHHhcCC-------CCceeCCCCCHHHHHHHHHHcCcceeEEE--CCCCCEEEEEeHHHHHHHH
Confidence 35789999998 89999999999999999999999999999 6678999999999998765
No 82
>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1
Probab=98.83 E-value=5.9e-09 Score=76.61 Aligned_cols=60 Identities=18% Similarity=0.327 Sum_probs=55.0
Q ss_pred cCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHH
Q 032497 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIV 121 (139)
Q Consensus 53 ~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~ 121 (139)
..++.++|++ ++.++.+++++.+|++.|.+++++.+||+ |++|+++|+||.+|+++.+..
T Consensus 71 ~~~v~~im~~-------~~~~v~~~~~l~~a~~~m~~~~~~~lpVv--d~~g~lvGiit~~Dil~~~~~ 130 (213)
T 1vr9_A 71 DSSVFNKVSL-------PDFFVHEEDNITHALLLFLEHQEPYLPVV--DEEMRLKGAVSLHDFLEALIE 130 (213)
T ss_dssp TSBSGGGCBC-------TTCCEETTSBHHHHHHHHHHCCCSEEEEE--CTTCBEEEEEEHHHHHHHHHH
T ss_pred CCcHHHHccC-------CCEEECCCCcHHHHHHHHHHhCCCEEEEE--cCCCEEEEEEEHHHHHHHHHH
Confidence 4579999998 79999999999999999999999999999 677999999999999987653
No 83
>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1
Probab=98.83 E-value=5.9e-09 Score=70.59 Aligned_cols=59 Identities=15% Similarity=0.333 Sum_probs=54.1
Q ss_pred ccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHH
Q 032497 52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII 120 (139)
Q Consensus 52 ~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~ 120 (139)
...++.++|.+ ++.++++++++.+|++.|.+++++++ |+ |++|+++|+||..|+++.+.
T Consensus 70 ~~~~v~~~m~~-------~~~~v~~~~~l~~~~~~m~~~~~~~l-Vv--d~~g~~~Giit~~dil~~~~ 128 (138)
T 2yzi_A 70 YDIPVERIMTR-------NLITANVNTPLGEVLRKMAEHRIKHI-LI--EEEGKIVGIFTLSDLLEASR 128 (138)
T ss_dssp TTSBGGGTCBC-------SCCEEETTSBHHHHHHHHHHHTCSEE-EE--EETTEEEEEEEHHHHHHHHH
T ss_pred ccCCHHHHhhC-------CCeEECCCCcHHHHHHHHHhcCCCEE-EE--CCCCCEEEEEEHHHHHHHHH
Confidence 35689999998 89999999999999999999999999 99 56899999999999998874
No 84
>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}
Probab=98.82 E-value=1e-08 Score=70.88 Aligned_cols=60 Identities=23% Similarity=0.388 Sum_probs=54.0
Q ss_pred ccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHc
Q 032497 52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQ 122 (139)
Q Consensus 52 ~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~ 122 (139)
...++.++|.+ ++.++++++++.+|++.|.++++ +||+ |++|+++|+||..|+++.+...
T Consensus 81 ~~~~v~~~m~~-------~~~~v~~~~~l~~a~~~m~~~~~--l~Vv--d~~g~~~Giit~~dil~~~~~~ 140 (157)
T 2emq_A 81 ETMKVEEVMNR-------NIPRLRLDDSLMKAVGLIVNHPF--VCVE--NDDGYFAGIFTRREVLKQLNKQ 140 (157)
T ss_dssp GTCBGGGTCBC-------CCCEEETTSBHHHHHHHHHHSSE--EEEE--CSSSSEEEEEEHHHHHHHHHHT
T ss_pred cCCcHHHHhCC-------CCceecCCCcHHHHHHHHhhCCE--EEEE--cCCCeEEEEEEHHHHHHHHHHH
Confidence 35689999998 89999999999999999999987 9999 6789999999999999987643
No 85
>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}
Probab=98.81 E-value=8.7e-09 Score=71.81 Aligned_cols=55 Identities=16% Similarity=0.320 Sum_probs=50.2
Q ss_pred ccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHH
Q 032497 52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYL 116 (139)
Q Consensus 52 ~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll 116 (139)
...+++++|++ +.++++++++.+|++.|.+++.+.+||+ |++|+++|+||..|++
T Consensus 101 ~~~~v~~im~~--------~~~v~~~~~l~~a~~~m~~~~~~~~~Vv--d~~g~~~Givt~~Dil 155 (156)
T 3oi8_A 101 EQFHLKSILRP--------AVFVPEGKSLTALLKEFREQRNHMAIVI--DEYGGTSGLVTFEDII 155 (156)
T ss_dssp GGCCHHHHCBC--------CCEEETTSBHHHHHHHHHHTTCCEEEEE--CTTSSEEEEEEHHHHC
T ss_pred CcccHHHHcCC--------CEEECCCCCHHHHHHHHHhcCCeEEEEE--CCCCCEEEEEEHHHhc
Confidence 35689999965 7899999999999999999999999999 7889999999999984
No 86
>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1
Probab=98.81 E-value=7.5e-09 Score=77.78 Aligned_cols=76 Identities=20% Similarity=0.238 Sum_probs=59.2
Q ss_pred cCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHH-HHHHcCCCCccCcc
Q 032497 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR-KIIVQGRSSKSTKV 131 (139)
Q Consensus 53 ~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~-~~~~~~~~~~~~~v 131 (139)
..+++++|.+ ++.++.+++++.+|++.|.+++.+.+||+ |++|+++|++|.+|+++ .+. .+......++
T Consensus 59 ~~~v~~~m~~-------~~~~v~~~~~l~~a~~~m~~~~~~~~~Vv--d~~~~~~Giit~~di~~~~~~-~~~~~~~~~v 128 (282)
T 2yzq_A 59 EEQLAMLVKR-------DVPVVKENDTLKKAAKLMLEYDYRRVVVV--DSKGKPVGILTVGDIIRRYFA-KSEKYKGVEI 128 (282)
T ss_dssp -----CCCBS-------CCCEEETTSBHHHHHHHHHHHTCSEEEEE--CTTSCEEEEEEHHHHHHHTTT-TCSGGGGCBS
T ss_pred cCCHHHHcCC-------CCcEECCCCcHHHHHHHHHHcCCCEEEEE--cCCCEEEEEEEHHHHHHHHHh-ccCCcccCcH
Confidence 4679999988 78999999999999999999999999999 67799999999999987 542 2212235678
Q ss_pred ccccccC
Q 032497 132 GDIMTEE 138 (139)
Q Consensus 132 ~~im~~~ 138 (139)
+++|+++
T Consensus 129 ~~~m~~~ 135 (282)
T 2yzq_A 129 EPYYQRY 135 (282)
T ss_dssp TTTSBSC
T ss_pred HHHhCCC
Confidence 8888654
No 87
>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*
Probab=98.80 E-value=5e-09 Score=78.43 Aligned_cols=58 Identities=29% Similarity=0.479 Sum_probs=53.5
Q ss_pred cCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHH
Q 032497 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKI 119 (139)
Q Consensus 53 ~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~ 119 (139)
..++.++|++ ++.++++++++.+|++.|.+++++++||+ |++|+++|+||.+|+++++
T Consensus 222 ~~~v~~~m~~-------~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv--d~~g~~~Givt~~dil~~l 279 (280)
T 3kh5_A 222 NVRMEEIMKR-------DVITAKEGDKLKKIAEIMVTNDIGALPVV--DENLRIKGIITEKDVLKYF 279 (280)
T ss_dssp HCBHHHHSBS-------SCCCBCTTCBHHHHHHHHHHHTCCEEEEE--CTTCBEEEEEEHHHHGGGG
T ss_pred CCcHHHHhcC-------CCEEECCCCCHHHHHHHHHHCCCCEEEEE--CCCCeEEEEEeHHHHHHhh
Confidence 4689999998 89999999999999999999999999999 7788999999999997653
No 88
>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*
Probab=98.80 E-value=7.1e-09 Score=73.43 Aligned_cols=61 Identities=21% Similarity=0.223 Sum_probs=55.5
Q ss_pred ccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHc
Q 032497 52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQ 122 (139)
Q Consensus 52 ~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~ 122 (139)
...++.++|.+ ++.++.+++++.+|++.|.+++.+.+||+ | +|+++|+||..|+++++...
T Consensus 106 ~~~~v~~im~~-------~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv--d-~g~~vGiit~~dll~~l~~~ 166 (185)
T 2j9l_A 106 PTLKLRNILDL-------SPFTVTDLTPMEIVVDIFRKLGLRQCLVT--H-NGRLLGIITKKDVLKHIAQM 166 (185)
T ss_dssp CCEECGGGEES-------SCCEEETTSBHHHHHHHHHHHTCSEEEEE--E-TTEEEEEEEHHHHHHHHHHH
T ss_pred cCccHHHhhCc-------CCeEeCCCCCHHHHHHHHHhCCCcEEEEE--E-CCEEEEEEEHHHHHHHHHHh
Confidence 35689999988 79999999999999999999999999999 5 89999999999999987654
No 89
>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*
Probab=98.80 E-value=4.9e-09 Score=72.28 Aligned_cols=56 Identities=18% Similarity=0.364 Sum_probs=50.9
Q ss_pred ccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHH
Q 032497 52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (139)
Q Consensus 52 ~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~ 117 (139)
...+++++|.+ ++.++.+++++.+|++.|.+++++.+||+ |++ +++|+||..|+++
T Consensus 93 ~~~~v~~~m~~-------~~~~v~~~~~l~~a~~~m~~~~~~~lpVv--d~~-~~~Giit~~dil~ 148 (149)
T 3k2v_A 93 RDASIADVMTR-------GGIRIRPGTLAVDALNLMQSRHITCVLVA--DGD-HLLGVVHMHDLLR 148 (149)
T ss_dssp TTCBHHHHSEE-------SCCEECTTCBHHHHHHHHHHHTCSEEEEE--ETT-EEEEEEEHHHHTC
T ss_pred ccCcHHHHcCC-------CCeEECCCCCHHHHHHHHHHcCCCEEEEe--cCC-EEEEEEEHHHhhc
Confidence 45789999998 79999999999999999999999999999 444 9999999999864
No 90
>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1
Probab=98.79 E-value=1.1e-08 Score=77.62 Aligned_cols=60 Identities=23% Similarity=0.410 Sum_probs=55.8
Q ss_pred cCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHH
Q 032497 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIV 121 (139)
Q Consensus 53 ~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~ 121 (139)
..++.++|.+ ++.++.+++++.+|++.|.+++++.+||+ |++|+++|+||.+||++++..
T Consensus 226 ~~~v~~~m~~-------~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv--d~~g~~~Giit~~Dil~~l~~ 285 (296)
T 3ddj_A 226 GKVVKDVMVT-------NLVTIDELASVNRAAAEMIVKRIGSLLIL--NKDNTIRGIITERDLLIALHH 285 (296)
T ss_dssp TCBHHHHSBC-------CCCBCCTTSBHHHHHHHHHHHTCSEEEEE--CTTSCEEEEEEHHHHHHHHHH
T ss_pred CcCHHHHhCC-------CCeEECCCCcHHHHHHHHHHcCCCEEEEE--CCCCeEEEEEcHHHHHHHHHH
Confidence 5689999998 89999999999999999999999999999 778999999999999998753
No 91
>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1
Probab=98.78 E-value=1.4e-08 Score=77.91 Aligned_cols=61 Identities=23% Similarity=0.263 Sum_probs=56.0
Q ss_pred ccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHH
Q 032497 52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIV 121 (139)
Q Consensus 52 ~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~ 121 (139)
...+++++|.+ ++.++++++++.+|++.|.++++.++||+ |++|+++|+||..|+++.+..
T Consensus 199 ~~~~v~~im~~-------~~~~v~~~~~l~ea~~~m~~~~~~~lpVV--d~~g~lvGiIT~~Dil~~i~~ 259 (286)
T 2oux_A 199 DDTLIADILNE-------RVISVHVGDDQEDVAQTIRDYDFLAVPVT--DYDDHLLGIVTVDDIIDVIDD 259 (286)
T ss_dssp TTSBHHHHSBS-------CCCCEETTSBHHHHHHHHHHHTCSEEEEE--CTTCBEEEEEEHHHHHHHHHH
T ss_pred CCCcHHHHcCC-------CCeeecCCCCHHHHHHHHHHcCCcEEEEE--cCCCeEEEEEEHHHHHHHHHH
Confidence 45789999998 79999999999999999999999999999 788999999999999987653
No 92
>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*
Probab=98.78 E-value=1e-08 Score=71.47 Aligned_cols=63 Identities=21% Similarity=0.361 Sum_probs=54.8
Q ss_pred ccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCC---ceEEEEeHHHHHHHHHH
Q 032497 52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQK---SVAGIITERDYLRKIIV 121 (139)
Q Consensus 52 ~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~---~lvGivt~~dll~~~~~ 121 (139)
...++.++|.+.. ++.++.+++++.+|++.|.+++++.+||+ |++| +++|+||..||++++..
T Consensus 79 ~~~~v~~~m~~~~-----~~~~v~~~~~l~~a~~~m~~~~~~~lpVv--d~~g~~~~~vGiit~~dil~~l~~ 144 (159)
T 3fv6_A 79 TSVPVHIIMTRMP-----NITVCRREDYVMDIAKHLIEKQIDALPVI--KDTDKGFEVIGRVTKTNMTKILVS 144 (159)
T ss_dssp TTCBGGGTSEETT-----SCCCBCTTSBHHHHHHHHHHHTCSEEEEE--EECSSSEEEEEEEEHHHHHHHHHH
T ss_pred cCcCHHHHHcCCC-----CcEEECCCCCHHHHHHHHHHcCCcEEEEE--eCCCcceeEEEEEEHHHHHHHHHH
Confidence 4578999998621 47889999999999999999999999999 5667 99999999999988754
No 93
>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1
Probab=98.77 E-value=1.5e-08 Score=70.45 Aligned_cols=59 Identities=14% Similarity=0.282 Sum_probs=53.4
Q ss_pred ccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHH
Q 032497 52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIV 121 (139)
Q Consensus 52 ~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~ 121 (139)
...++.++|.+ ++.++.+++++.+|++.|.++++ +||+ |++|+++|+||..|+++.+..
T Consensus 84 ~~~~v~~~m~~-------~~~~v~~~~~l~~a~~~m~~~~~--lpVv--d~~g~~vGiit~~dil~~~~~ 142 (159)
T 1yav_A 84 DQITVEEVMLT-------DIPRLHINDPIMKGFGMVINNGF--VCVE--NDEQVFEGIFTRRVVLKELNK 142 (159)
T ss_dssp TTSBHHHHSBC-------SCCEEETTSBHHHHHHHTTTCSE--EEEE--CTTCBEEEEEEHHHHHHHHHH
T ss_pred ccCCHHHhcCC-------CCceEcCCCCHHHHHHHHHhCCE--EEEE--eCCCeEEEEEEHHHHHHHHHH
Confidence 45789999998 79999999999999999999887 9999 678999999999999988754
No 94
>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A
Probab=98.77 E-value=6.4e-09 Score=74.29 Aligned_cols=59 Identities=20% Similarity=0.288 Sum_probs=53.8
Q ss_pred ccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHH
Q 032497 52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKI 119 (139)
Q Consensus 52 ~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~ 119 (139)
...+++++|.+ ++.++.+++++.+|++.|.+++.+.+||+ |++|+++|+||..|+++++
T Consensus 73 ~~~~v~~im~~-------~~~~v~~~~~l~~a~~~m~~~~~~~lpVv--d~~g~~~Givt~~dll~~~ 131 (184)
T 1pvm_A 73 DEVPIRLVMRK-------PIPKVKSDYDVKDVAAYLSENGLERCAVV--DDPGRVVGIVTLTDLSRYL 131 (184)
T ss_dssp GGSBGGGTSBS-------SCCEEETTCBHHHHHHHHHHHTCSEEEEE--CTTCCEEEEEEHHHHTTTS
T ss_pred ccCCHHHHhCC-------CCcEECCCCCHHHHHHHHHHcCCcEEEEE--cCCCeEEEEEEHHHHHHHH
Confidence 35689999998 79999999999999999999999999999 6779999999999998754
No 95
>3ctu_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.81A {Streptococcus pneumoniae TIGR4} PDB: 3k6e_A
Probab=98.77 E-value=9.6e-09 Score=71.14 Aligned_cols=58 Identities=22% Similarity=0.309 Sum_probs=52.8
Q ss_pred cCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHH
Q 032497 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIV 121 (139)
Q Consensus 53 ~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~ 121 (139)
..+++++|.+ ++.++.+++++.+|++.|.+++ .+||+ |++|+++|+||..|+++++..
T Consensus 85 ~~~v~~~m~~-------~~~~v~~~~~l~~a~~~~~~~~--~lpVv--d~~g~~~Giit~~dil~~l~~ 142 (156)
T 3ctu_A 85 DTDIVHMTKT-------DVAVVSPDFTITEVLHKLVDES--FLPVV--DAEGIFQGIITRKSILKAVNA 142 (156)
T ss_dssp TSBGGGGCBC-------SCCCBCSSCCHHHHHHHTTTSS--EEEEE--CTTSBEEEEEETTHHHHHHHH
T ss_pred cCcHHHhccC-------CceeeCCCCcHHHHHHHHHHcC--eEEEE--cCCCeEEEEEEHHHHHHHHHH
Confidence 5789999998 7899999999999999999886 79999 778999999999999998754
No 96
>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C
Probab=98.74 E-value=6.1e-08 Score=74.40 Aligned_cols=66 Identities=20% Similarity=0.353 Sum_probs=56.0
Q ss_pred cCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHH
Q 032497 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIV 121 (139)
Q Consensus 53 ~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~ 121 (139)
..+++++|++.. ...+++.++.+++++.+|++.|.+++++++||+ |++|+++|+||.+|+++++..
T Consensus 255 ~~~v~~~m~~~~-~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vv--d~~~~l~Giit~~Dil~~l~~ 320 (323)
T 3t4n_C 255 SLSVGEALMRRS-DDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVV--DDVGRLVGVLTLSDILKYILL 320 (323)
T ss_dssp TSBHHHHGGGSC-TTCCCCEEECTTCBHHHHHHHHHHSCCCEEEEE--CTTSBEEEEEEHHHHHHHHHH
T ss_pred cCCHHHHHhhcc-ccCCCCEEECCCCCHHHHHHHHHHhCCCEEEEE--CCCCcEEEEEEHHHHHHHHHh
Confidence 468999998721 001147999999999999999999999999999 778999999999999998864
No 97
>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A
Probab=98.72 E-value=1.2e-08 Score=77.82 Aligned_cols=60 Identities=23% Similarity=0.366 Sum_probs=54.3
Q ss_pred ccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHH
Q 032497 52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII 120 (139)
Q Consensus 52 ~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~ 120 (139)
...+++++|.+ ++.++++++++.+|++.|.++++..+||+ |++|+++|+||..|+++.+.
T Consensus 197 ~~~~v~~im~~-------~~~~v~~~~~l~~a~~~m~~~~~~~lpVv--d~~g~lvGivT~~Dil~~i~ 256 (278)
T 2yvy_A 197 PRTRVAEIMNP-------KVVYVRTDTDQEEVARLMADYDFTVLPVV--DEEGRLVGIVTVDDVLDVLE 256 (278)
T ss_dssp TTCBSTTTSBS-------SCCCEETTSBHHHHHHHHHHHTCSEEEEE--CTTSBEEEEEEHHHHHHHC-
T ss_pred CCCcHHHHhCC-------CCeEEeCCCCHHHHHHHHHhcCCCEEEEE--eCCCeEEEEEEHHHHHHHHH
Confidence 35678999987 79999999999999999999999999999 77899999999999998764
No 98
>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}
Probab=98.72 E-value=3.4e-08 Score=70.40 Aligned_cols=50 Identities=12% Similarity=0.167 Sum_probs=47.1
Q ss_pred CcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHH
Q 032497 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIV 121 (139)
Q Consensus 70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~ 121 (139)
++.++++++++.+|++.|.+++++.+||+ |++|+++||||..|+++.+..
T Consensus 108 ~~~~v~~~~~l~~al~~m~~~~~~~~~Vv--de~g~lvGiIT~~Dil~~l~~ 157 (173)
T 3ocm_A 108 DPIIVHESIGILRLMDTLKRSRGQLVLVA--DEFGAIEGLVTPIDVFEAIAG 157 (173)
T ss_dssp CCCEECGGGCHHHHHHHHHHSTTCCEEEE--CTTCCEEEEECHHHHHHHHHC
T ss_pred CCeEECCCCcHHHHHHHHHHcCCeEEEEE--eCCCCEEEEEeHHHHHHHHhC
Confidence 68999999999999999999999999999 788999999999999998863
No 99
>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}
Probab=98.70 E-value=4.7e-09 Score=88.82 Aligned_cols=61 Identities=11% Similarity=0.107 Sum_probs=54.2
Q ss_pred ccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHH-HcCCCEEEEEecCCCCceEEEEeHHHHHHHH
Q 032497 52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMT-QHNVGALVVVKPGEQKSVAGIITERDYLRKI 119 (139)
Q Consensus 52 ~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~-~~~~~~lpVv~~d~~~~lvGivt~~dll~~~ 119 (139)
...+|+|+|++.. ++.++++++|+.|+.+.|. +++++.+||+ |++++++|+||++|+++.+
T Consensus 451 ~~~~V~diM~p~~-----~v~~v~~~~t~~e~~~~~~~~~~~~~~PVv--d~~~~lvGiVt~~DL~~~l 512 (632)
T 3org_A 451 PEMTAREIMHPIE-----GEPHLFPDSEPQHIKGILEKFPNRLVFPVI--DANGYLLGAISRKEIVDRL 512 (632)
T ss_dssp TTSBHHHHCBCTT-----TSCCBCSSSCHHHHHHHHHHSTTCCEECBB--CTTCBBCCEESHHHHTTTT
T ss_pred ccCcHHHHhhcCC-----CceEecCCCcHHHHHHHHHhcCCcceEEEE--ecCCeEEEEEEHHHHHHHH
Confidence 4689999999211 7899999999999999999 7999999999 6789999999999998764
No 100
>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*
Probab=98.70 E-value=6.4e-08 Score=74.59 Aligned_cols=67 Identities=21% Similarity=0.295 Sum_probs=55.8
Q ss_pred cCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHc
Q 032497 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQ 122 (139)
Q Consensus 53 ~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~ 122 (139)
..++.++|.+.... +.++.++.+++++.+|++.|.+++++.+||+ |++|+++|+||..|+++++...
T Consensus 250 ~~~v~~~m~~~~~~-~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vv--d~~g~l~Giit~~dil~~~~~~ 316 (334)
T 2qrd_G 250 DLSVGEALLKRPAN-FDGVHTCRATDRLDGIFDAIKHSRVHRLFVV--DENLKLEGILSLADILNYIIYD 316 (334)
T ss_dssp GSBHHHHHTTCCTT-CCCCCEECTTCBHHHHHHHHHHSCCCEEEEE--CTTCBEEEEEEHHHHHHHHHSC
T ss_pred cCcHHHHHhccccc-CCCCEEECCCCcHHHHHHHHHHcCCCEEEEE--CCCCeEEEEEeHHHHHHHHHhc
Confidence 46899999841000 0168999999999999999999999999999 7789999999999999987643
No 101
>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*
Probab=98.70 E-value=1.8e-08 Score=77.79 Aligned_cols=76 Identities=16% Similarity=0.292 Sum_probs=62.1
Q ss_pred cCcHHHH---hhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCCCCccC
Q 032497 53 STTISDI---LKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKST 129 (139)
Q Consensus 53 ~~~v~dv---m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~~~~~~ 129 (139)
..+++++ |.+ ++.++.+++++.+|++.|.+++++++||+ |++|+++|+||.+|+++.+..........
T Consensus 181 ~~~v~~l~~~m~~-------~~~~v~~~~~~~~~~~~m~~~~~~~~~Vv--d~~~~~~Giit~~dl~~~~~~~~~~~~~~ 251 (334)
T 2qrd_G 181 RVPLNQMTIGTWS-------NLATASMETKVYDVIKMLAEKNISAVPIV--NSEGTLLNVYESVDVMHLIQDGDYSNLDL 251 (334)
T ss_dssp CCBGGGSSCSBCS-------SCCCBCTTSBHHHHHHHHHHHTCSEEEEE--CTTCBEEEEEETHHHHHHHTTSCGGGGGS
T ss_pred hCcHHHhCCcccC-------CceEECCCCcHHHHHHHHHHcCCcEEEEE--cCCCcEEEEEEHHHHHHHhhccccccccC
Confidence 3678884 776 78999999999999999999999999999 67899999999999998764321122467
Q ss_pred cccccccc
Q 032497 130 KVGDIMTE 137 (139)
Q Consensus 130 ~v~~im~~ 137 (139)
++.++|++
T Consensus 252 ~v~~~m~~ 259 (334)
T 2qrd_G 252 SVGEALLK 259 (334)
T ss_dssp BHHHHHTT
T ss_pred cHHHHHhc
Confidence 78888873
No 102
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A
Probab=98.67 E-value=3e-08 Score=81.31 Aligned_cols=73 Identities=18% Similarity=0.353 Sum_probs=62.6
Q ss_pred CCccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHc-----CCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCC
Q 032497 50 GFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQH-----NVGALVVVKPGEQKSVAGIITERDYLRKIIVQGR 124 (139)
Q Consensus 50 ~~~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~-----~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~ 124 (139)
.+...+++++|++ ++.++++++|+.+|++.|.++ +++++||+ |++++++|+||.+|++.+
T Consensus 151 ~~~~~~v~~iM~~-------~~v~v~~~~tv~ea~~~~~~~~~~~~~~~~ipVv--d~~~~lvGiVt~~Dll~~------ 215 (473)
T 2zy9_A 151 RYEEDEAGGLMTP-------EYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVV--DEKGRLKGVLSLRDLIVA------ 215 (473)
T ss_dssp TSCTTBSTTTCBS-------CEEEECTTCBHHHHHHHHHHHGGGCSEEEEEEEE--CTTSBEEEEEEHHHHHHS------
T ss_pred cCCCCCHHHhCCC-------CceEeCCCCcHHHHHHHHHhccCCcCceeEEEEE--CCCCcEEEEEEHHHHhcC------
Confidence 4456789999998 899999999999999999986 57899999 678999999999999752
Q ss_pred CCccCccccccccC
Q 032497 125 SSKSTKVGDIMTEE 138 (139)
Q Consensus 125 ~~~~~~v~~im~~~ 138 (139)
..+.++.++|+++
T Consensus 216 -~~~~~v~dim~~~ 228 (473)
T 2zy9_A 216 -DPRTRVAEIMNPK 228 (473)
T ss_dssp -CTTSBGGGTSBSS
T ss_pred -CCCCcHHHHhCCC
Confidence 1467899999754
No 103
>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*
Probab=98.59 E-value=1.5e-07 Score=72.48 Aligned_cols=66 Identities=23% Similarity=0.382 Sum_probs=54.9
Q ss_pred cCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHH
Q 032497 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIV 121 (139)
Q Consensus 53 ~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~ 121 (139)
..++.++|... ..+..++.++.+++++.+|++.|.+++++++||+ |++|+++|+||..|+++++..
T Consensus 258 ~~~v~~~~~~~-~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv--d~~g~l~Giit~~Dil~~~~~ 323 (330)
T 2v8q_E 258 DVSVTKALQHR-SHYFEGVLKCYLHETLEAIINRLVEAEVHRLVVV--DEHDVVKGIVSLSDILQALVL 323 (330)
T ss_dssp SSBHHHHGGGC-CSCCCSCCEECTTSBHHHHHHHHHHHTCSEEEEE--CTTSBEEEEEEHHHHHHHHHS
T ss_pred cCcHHHHHhcc-ccccCCCeEECCCCcHHHHHHHHHHCCCcEEEEE--cCCCcEEEEEeHHHHHHHHHh
Confidence 46899999520 0001178999999999999999999999999999 778999999999999998753
No 104
>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1
Probab=98.59 E-value=4.6e-08 Score=74.14 Aligned_cols=48 Identities=8% Similarity=0.050 Sum_probs=45.4
Q ss_pred CcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHH
Q 032497 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII 120 (139)
Q Consensus 70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~ 120 (139)
.|+++.+++++.++..+|...|++++||+ ++|+++||||++||++++.
T Consensus 198 sP~tv~~~tsL~~v~~LF~~lglr~l~V~---~~GrLVGIVTrkDl~kai~ 245 (250)
T 2d4z_A 198 SPFQLVEGTSLQKTHTLFSLLGLDRAYVT---SMGKLVGVVALAEIQAAIE 245 (250)
T ss_dssp CSCCBCTTCBHHHHHHHHHHHTCSEEEEE---ETTEEEEEEEHHHHHHHHH
T ss_pred CCeEECCCCcHHHHHHHHHHhCCeEEEEE---ECCEEEEEEEHHHHHHHHH
Confidence 89999999999999999999999999999 4799999999999999873
No 105
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A
Probab=98.59 E-value=8.4e-08 Score=78.62 Aligned_cols=61 Identities=23% Similarity=0.361 Sum_probs=55.8
Q ss_pred ccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHH
Q 032497 52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIV 121 (139)
Q Consensus 52 ~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~ 121 (139)
...+++++|++ ++.++++++++.+|++.|.+++...+||+ |++|+++|+||.+|+++.+..
T Consensus 217 ~~~~v~dim~~-------~~~~v~~~~~l~ea~~~m~~~~~~~lpVV--De~g~lvGiIT~~Dil~~i~~ 277 (473)
T 2zy9_A 217 PRTRVAEIMNP-------KVVYVRTDTDQEEVARLMADYDFTVLPVV--DEEGRLVGIVTVDDVLDVLEA 277 (473)
T ss_dssp TTSBGGGTSBS-------SCCCEESSSBHHHHHHHHHHHTCSEEEEE--CTTSBEEEEEEHHHHHHHHHH
T ss_pred CCCcHHHHhCC-------CCeEEeCCCcHHHHHHHHHhcCCcEEEEE--cCCCEEEEEEehHhhHHHHHH
Confidence 45789999988 79999999999999999999999999999 788999999999999987643
No 106
>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*
Probab=98.54 E-value=8.9e-08 Score=73.76 Aligned_cols=62 Identities=18% Similarity=0.236 Sum_probs=53.2
Q ss_pred ccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCC-CceEEEEeHHHHHHHHH
Q 032497 52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQ-KSVAGIITERDYLRKII 120 (139)
Q Consensus 52 ~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~-~~lvGivt~~dll~~~~ 120 (139)
...+++|+|++.. ++.++++++|+.+|++.|.+++++++||+ +++ ++++|+||.+|++..+.
T Consensus 33 ~~~~v~dim~p~~-----~v~~v~~~~~v~~a~~~~~~~~~~~~pV~--d~~~~~~vGivt~~Dll~~l~ 95 (330)
T 2v8q_E 33 KSHRCYDLIPTSS-----KLVVFDTSLQVKKAFFALVTNGVRAAPLW--DSKKQSFVGMLTITDFINILH 95 (330)
T ss_dssp HHSBGGGGSCSEE-----EEEEEETTSBHHHHHHHHHHHTCSEEEEE--ETTTTEEEEEEEHHHHHHHHH
T ss_pred HcCcHhhhccCCC-----cEEEEeCCCcHHHHHHHHHHcCCcEEEEE--eCCCCeEEEEEEHHHHHHHHH
Confidence 3468999994321 78999999999999999999999999999 454 79999999999988654
No 107
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}
Probab=98.47 E-value=1.4e-07 Score=77.87 Aligned_cols=66 Identities=23% Similarity=0.254 Sum_probs=54.8
Q ss_pred HHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCCCCccCcccccc
Q 032497 56 ISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIM 135 (139)
Q Consensus 56 v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~~~~~~~v~~im 135 (139)
+.++|.+ ++.++.+++|+.+++++|.+++++.+||+ |++++++|+||.+|++. ... .+.++.++|
T Consensus 91 ~~~~m~~-------d~v~v~~~~tv~ea~~~m~~~~~s~~PVv--d~~~~lvGiVt~rDL~~-----~~~-~~~~v~diM 155 (496)
T 4fxs_A 91 FEAGVVT-------HPVTVRPEQTIADVMELTHYHGFAGFPVV--TENNELVGIITGRDVRF-----VTD-LTKSVAAVM 155 (496)
T ss_dssp CCC--CB-------CCCCBCSSSBHHHHHHHHTSSCCCEEEEE--CSSSBEEEEEEHHHHTT-----CCC-TTSBGGGTS
T ss_pred ccccccc-------CceEECCCCCHHHHHHHHHHcCCcEEEEE--ccCCEEEEEEEHHHHhh-----ccc-CCCcHHHHh
Confidence 3456776 89999999999999999999999999999 67899999999999852 122 467899999
Q ss_pred c
Q 032497 136 T 136 (139)
Q Consensus 136 ~ 136 (139)
+
T Consensus 156 ~ 156 (496)
T 4fxs_A 156 T 156 (496)
T ss_dssp E
T ss_pred c
Confidence 8
No 108
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*
Probab=98.45 E-value=1.1e-07 Score=78.64 Aligned_cols=73 Identities=27% Similarity=0.441 Sum_probs=58.9
Q ss_pred HHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCC--CCceEEEEeHHHHHHHHHHcCCCCccCcccc
Q 032497 56 ISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGE--QKSVAGIITERDYLRKIIVQGRSSKSTKVGD 133 (139)
Q Consensus 56 v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~--~~~lvGivt~~dll~~~~~~~~~~~~~~v~~ 133 (139)
+.++|+.. ..+..++.++.+++|+.+++++|.+++++.+||+ |+ +++++|+||.+|++. .. ..+.++.+
T Consensus 109 V~~V~~~~-~~m~~d~v~l~~~~tv~ea~~~m~~~~~s~~pVv--d~g~~~~lvGiVt~rDl~~-----~~-~~~~~V~~ 179 (511)
T 3usb_A 109 VDKVKRSE-SGVISDPFFLTPEHQVYDAEHLMGKYRISGVPVV--NNLDERKLVGIITNRDMRF-----IQ-DYSIKISD 179 (511)
T ss_dssp HHHHHTSS-SCSSSSCCCBCTTSBHHHHHHHHHHHCCSEEEEE--SCTTTCBEEEEEEHHHHTT-----CC-CSSSBHHH
T ss_pred HHHhhccc-cccccCCEEECCCCCHHHHHHHHHHcCCcEEEEE--ecCCCCEEEEEEEehHhhh-----hc-cCCCcHHH
Confidence 66666542 2233478999999999999999999999999999 66 799999999999953 12 24678999
Q ss_pred cccc
Q 032497 134 IMTE 137 (139)
Q Consensus 134 im~~ 137 (139)
+|++
T Consensus 180 vM~~ 183 (511)
T 3usb_A 180 VMTK 183 (511)
T ss_dssp HCCC
T ss_pred hccc
Confidence 9985
No 109
>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1
Probab=98.42 E-value=3e-07 Score=75.33 Aligned_cols=68 Identities=19% Similarity=0.262 Sum_probs=58.7
Q ss_pred cHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecC--CCCceEEEEeHHHHHHHHHHcCCCCccCccc
Q 032497 55 TISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPG--EQKSVAGIITERDYLRKIIVQGRSSKSTKVG 132 (139)
Q Consensus 55 ~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d--~~~~lvGivt~~dll~~~~~~~~~~~~~~v~ 132 (139)
.+.++|++ ++.++.+++++.++++.|.+++++.+||+ | ++++++|+||.+|++.. . . .+.++.
T Consensus 91 ~~~~im~~-------~~~~v~~~~tv~ea~~~m~~~~~~~~pVv--d~~~~~~lvGivt~~Dl~~~---~--~-~~~~v~ 155 (491)
T 1zfj_A 91 RSENGVII-------DPFFLTPEHKVSEAEELMQRYRISGVPIV--ETLANRKLVGIITNRDMRFI---S--D-YNAPIS 155 (491)
T ss_dssp HHTTTTSS-------SCCCBCSSSBHHHHHHHHHHTTCSEEEEE--SCTTTCBEEEEEEHHHHHHC---S--C-SSSBTT
T ss_pred hHHhcCcC-------CCeEECCCCcHHHHHHHHHHcCCCEEEEE--EeCCCCEEEEEEEHHHHhhh---c--c-CCCcHH
Confidence 35778887 89999999999999999999999999999 6 68999999999999753 1 2 467899
Q ss_pred ccccc
Q 032497 133 DIMTE 137 (139)
Q Consensus 133 ~im~~ 137 (139)
++|++
T Consensus 156 ~im~~ 160 (491)
T 1zfj_A 156 EHMTS 160 (491)
T ss_dssp TSCCC
T ss_pred HHcCC
Confidence 99985
No 110
>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*
Probab=98.36 E-value=1.3e-07 Score=78.34 Aligned_cols=60 Identities=10% Similarity=0.151 Sum_probs=52.0
Q ss_pred ccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCC----CCceEEEEeHHHHHHHHHHc
Q 032497 52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGE----QKSVAGIITERDYLRKIIVQ 122 (139)
Q Consensus 52 ~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~----~~~lvGivt~~dll~~~~~~ 122 (139)
...+|.++|++ ++.++.+++++.+++++|.++++ +||+ |+ +++++||||..||++.+...
T Consensus 449 ~~~~V~~im~~-------~~~~v~~~~~l~~a~~~m~~~~~--~pVV--d~~~~~~g~lvGIVT~~Dll~~l~~~ 512 (527)
T 3pc3_A 449 QSDPAIKALNK-------RVIRLNESEILGKLARVLEVDPS--VLIL--GKNPAGKVELKALATKLDVTTFIAAG 512 (527)
T ss_dssp TTSBGGGGEET-------TCCEEETTSBHHHHHHHHTTCSE--EEEE--EECSSSCEEEEEEEEHHHHHHHHHTC
T ss_pred CCCcHHHHhcC-------CCeEECCCCcHHHHHHHHhhCCE--EEEE--eCCcccCCeEEEEEEHHHHHHHHHhc
Confidence 45789999998 89999999999999999987764 7999 44 38999999999999988643
No 111
>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}
Probab=98.35 E-value=2.1e-07 Score=78.69 Aligned_cols=54 Identities=15% Similarity=0.052 Sum_probs=48.6
Q ss_pred cHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHH
Q 032497 55 TISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRK 118 (139)
Q Consensus 55 ~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~ 118 (139)
++.++|++ ++.++++++++.+|++.|.+++.+.+||+ ++|+++||||++|++++
T Consensus 569 ~v~~iMt~-------~pitV~~~~~l~ea~~~M~~~~i~~lpVv---e~G~lvGIVT~~Dll~~ 622 (632)
T 3org_A 569 SLVVPCDV-------SPIVVTSYSLVRQLHFLFVMLMPSMIYVT---ERGKLVGIVEREDVAYG 622 (632)
T ss_dssp --CCSCCC-------CCCEEETTCBHHHHHHHHHHTCCSEEEEE---ETTEEEEEEEGGGTEEC
T ss_pred ccchhhcC-------CCceecCCCcHHHHHHHHHhcCCCEEEEE---ECCEEEEEEehhhHHHH
Confidence 47889998 89999999999999999999999999999 47899999999999764
No 112
>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1
Probab=98.35 E-value=4.7e-08 Score=80.29 Aligned_cols=68 Identities=29% Similarity=0.379 Sum_probs=1.1
Q ss_pred cHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCCCCccCccccc
Q 032497 55 TISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDI 134 (139)
Q Consensus 55 ~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~~~~~~~v~~i 134 (139)
++.++|++ ++.++.+++++.+|++.|.+++++.+||+ |++++++|+||.+|+++. . . .+.++.++
T Consensus 96 ~~~~iM~~-------~~~~v~~~~tv~ea~~~m~~~~~~~~pVv--d~~~~lvGivt~~Dl~~~---~--~-~~~~v~~i 160 (494)
T 1vrd_A 96 KTENGIIY-------DPITVTPDMTVKEAIDLMAEYKIGGLPVV--DEEGRLVGLLTNRDVRFE---K--N-LSKKIKDL 160 (494)
T ss_dssp TC------------------------------------------------------------------------------
T ss_pred hHhhcCcc-------CCeEECCCCCHHHHHHHHHHcCceEEEEE--cCCCEEEEEEEHHHHHhh---c--C-CCCcHHHH
Confidence 46788888 89999999999999999999999999999 678899999999999752 1 1 35678888
Q ss_pred ccc
Q 032497 135 MTE 137 (139)
Q Consensus 135 m~~ 137 (139)
|++
T Consensus 161 m~~ 163 (494)
T 1vrd_A 161 MTP 163 (494)
T ss_dssp ---
T ss_pred hCC
Confidence 875
No 113
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*
Probab=98.32 E-value=1.2e-06 Score=72.44 Aligned_cols=61 Identities=23% Similarity=0.308 Sum_probs=55.4
Q ss_pred ccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHH
Q 032497 52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII 120 (139)
Q Consensus 52 ~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~ 120 (139)
...++.++|++. ++.++++++++.++++.|.++++..+||+ |++|+++|+||.+|+++.+.
T Consensus 173 ~~~~V~~vM~~~------~~vtv~~~~~l~eal~~m~~~~i~~lpVV--De~g~l~GiIT~~Dil~~~~ 233 (511)
T 3usb_A 173 YSIKISDVMTKE------QLITAPVGTTLSEAEKILQKYKIEKLPLV--DNNGVLQGLITIKDIEKVIE 233 (511)
T ss_dssp SSSBHHHHCCCC------CCCCEETTCCHHHHHHHHHHHTCSEEEEE--CTTSBEEEEEEHHHHHHHHH
T ss_pred CCCcHHHhcccC------CCEEECCCCCHHHHHHHHHHcCCCEEEEE--eCCCCEeeeccHHHHHHhhh
Confidence 357899999951 58999999999999999999999999999 78999999999999998874
No 114
>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*
Probab=98.29 E-value=1.3e-07 Score=78.00 Aligned_cols=59 Identities=20% Similarity=0.353 Sum_probs=0.0
Q ss_pred cCcHHHHhhhcCCCCCCC--cEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHH
Q 032497 53 STTISDILKAKGKGADGS--WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII 120 (139)
Q Consensus 53 ~~~v~dvm~~~~~~~~~~--~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~ 120 (139)
..++.++|++ + +.++++++++.+|+++|.+++++.+||+ |++++++|+||.+||++.+.
T Consensus 160 ~~~V~diM~~-------~~~~~tv~~~~sl~ea~~~m~~~~i~~lpVV--De~g~lvGiIT~~Dil~~~~ 220 (503)
T 1me8_A 160 ETKVSDMMTP-------FSKLVTAHQDTKLSEANKIIWEKKLNALPII--DDDQHLRYIVFRKDYDRSQV 220 (503)
T ss_dssp ----------------------------------------------------------------------
T ss_pred cCcHHHHhCC-------CCCCEEEcCCCcHHHHHHHHHHcCCCEEEEE--cCCCeEEEEEEecHHHHhhh
Confidence 4679999998 6 9999999999999999999999999999 78899999999999998775
No 115
>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*
Probab=98.21 E-value=1.7e-07 Score=77.78 Aligned_cols=63 Identities=25% Similarity=0.312 Sum_probs=0.0
Q ss_pred CCcEEecCCCCHHHHHHHHHHcCCCEEEEEecC-CCCceEEEEeHHHHHHHHHHcCCCCccCccccccccC
Q 032497 69 GSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPG-EQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEE 138 (139)
Q Consensus 69 ~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d-~~~~lvGivt~~dll~~~~~~~~~~~~~~v~~im~~~ 138 (139)
.+|+++.|+.|+.+|+++|.+++++.+||++.+ .+++|+||||.+|+.- + + .+.+|.++|+++
T Consensus 146 ~dPvtl~P~~Tv~da~~l~~~~~isgvpVvd~g~~~~kLvGIvT~RD~rf----~--d-~~~~V~evMT~~ 209 (556)
T 4af0_A 146 TDPLCLGPDATVGDVLEIKAKFGFCGVPITETGEPDSKLLGIVTGRDVQF----Q--D-AETPIKSVMTTE 209 (556)
T ss_dssp -----------------------------------------------------------------------
T ss_pred CCCeEcCCCCCHHHHHHHHHHhCCCccccccccCcCCEEEEEEecccccc----c--c-cceEhhhhcccc
Confidence 479999999999999999999999999999411 2689999999999832 1 2 467899999864
No 116
>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*
Probab=98.20 E-value=1.6e-07 Score=77.62 Aligned_cols=62 Identities=26% Similarity=0.279 Sum_probs=0.0
Q ss_pred CcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCC---CceEEEEeHHHHHHHHHHcCCCCccCccccccccC
Q 032497 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQ---KSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEE 138 (139)
Q Consensus 70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~---~~lvGivt~~dll~~~~~~~~~~~~~~v~~im~~~ 138 (139)
++.++++++|+.+|++.|.+++++.+||+ |++ ++++|+||.+|+++. .. ..+.++.++|+++
T Consensus 106 ~~~~v~~~~tv~eal~~m~~~~~s~~pVv--d~~~~~g~lvGiVt~~Dl~~~----~~-~~~~~V~diM~~~ 170 (503)
T 1me8_A 106 SDSNVKPDQTFADVLAISQRTTHNTVAVT--DDGTPHGVLLGLVTQRDYPID----LT-QTETKVSDMMTPF 170 (503)
T ss_dssp ------------------------------------------------------------------------
T ss_pred CCeEECCCCcHHHHHHHHHHcCceEEEEE--ECCCcCCeEEEEEEHHHHHhh----hc-cccCcHHHHhCCC
Confidence 89999999999999999999999999999 555 899999999999753 11 2467788898863
No 117
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=98.20 E-value=1.1e-07 Score=78.38 Aligned_cols=66 Identities=21% Similarity=0.240 Sum_probs=2.2
Q ss_pred cHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCCCCccCccccc
Q 032497 55 TISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDI 134 (139)
Q Consensus 55 ~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~~~~~~~v~~i 134 (139)
+++++|.+ ++.++++++|+.+|+++|.+++++.+||+ | +++++|+||.+|+.... ..+.++.++
T Consensus 89 ~~~~~m~~-------~~v~v~~~~tv~ea~~~m~~~~~s~~pVv--d-~g~lvGIVt~rDl~~~~------~~~~~V~~v 152 (490)
T 4avf_A 89 KHETAIVR-------DPVTVTPSTKIIELLQMAREYGFSGFPVV--E-QGELVGIVTGRDLRVKP------NAGDTVAAI 152 (490)
T ss_dssp HCCC----------------------------------------------------------------------------
T ss_pred ccccCccc-------CceEeCCCCcHHHHHHHHHHhCCCEEEEE--E-CCEEEEEEEhHHhhhcc------ccCCcHHHH
Confidence 45667777 89999999999999999999999999999 5 89999999999995321 246788999
Q ss_pred cc
Q 032497 135 MT 136 (139)
Q Consensus 135 m~ 136 (139)
|+
T Consensus 153 Mt 154 (490)
T 4avf_A 153 MT 154 (490)
T ss_dssp --
T ss_pred hc
Confidence 98
No 118
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=98.18 E-value=2.1e-07 Score=76.66 Aligned_cols=60 Identities=17% Similarity=0.277 Sum_probs=0.0
Q ss_pred cCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHH
Q 032497 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKI 119 (139)
Q Consensus 53 ~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~ 119 (139)
..++.++|+++. ++.++++++++.+|+++|.++++..+||+ |++++++|+||.+|++++.
T Consensus 146 ~~~V~~vMtp~~-----~~vtv~~~~~l~ea~~~m~~~~i~~lpVV--De~g~lvGiIT~~Dil~~~ 205 (490)
T 4avf_A 146 GDTVAAIMTPKD-----KLVTAREGTPLEEMKAKLYENRIEKMLVV--DENFYLRGLVTFRDIEKAK 205 (490)
T ss_dssp -------------------------------------------------------------------
T ss_pred CCcHHHHhccCC-----CCEEECCCCcHHHHHHHHHHcCCCEEEEE--cCCCcEEEEEehHHhhhhc
Confidence 468999999321 38999999999999999999999999999 7899999999999998864
No 119
>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1
Probab=98.12 E-value=4e-06 Score=68.59 Aligned_cols=60 Identities=18% Similarity=0.305 Sum_probs=53.1
Q ss_pred cCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHH
Q 032497 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII 120 (139)
Q Consensus 53 ~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~ 120 (139)
..++.++|++. ++.++++++++.++++.|.+++.+.+||+ |++++++|++|..|+++.+.
T Consensus 151 ~~~v~~im~~~------~~~~v~~~~~l~~a~~~m~~~~~~~lpVV--d~~g~lvGivt~~Dil~~~~ 210 (491)
T 1zfj_A 151 NAPISEHMTSE------HLVTAAVGTDLETAERILHEHRIEKLPLV--DNSGRLSGLITIKDIEKVIE 210 (491)
T ss_dssp SSBTTTSCCCS------CCCCEETTCCHHHHHHHHHHTTCSEEEEE--CTTSBEEEEEEHHHHHHHHH
T ss_pred CCcHHHHcCCC------CCEEECCCCCHHHHHHHHHHcCCCEEEEE--cCCCcEEEEEEHHHHHHHHh
Confidence 45788888741 37889999999999999999999999999 78999999999999998774
No 120
>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*
Probab=98.05 E-value=5.7e-07 Score=74.63 Aligned_cols=58 Identities=16% Similarity=0.253 Sum_probs=0.0
Q ss_pred cCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHH
Q 032497 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKI 119 (139)
Q Consensus 53 ~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~ 119 (139)
..+|.++|++ ++++++++.++.+|.++|.++++..+||| |++++|+|+||.+|+.+..
T Consensus 199 ~~~V~evMT~-------~lvt~~~~~~leeA~~iL~~~kieklpVV--d~~g~LvGlIT~kDi~k~~ 256 (556)
T 4af0_A 199 ETPIKSVMTT-------EVVTGSSPITLEKANSLLRETKKGKLPIV--DSNGHLVSLVARSDLLKNQ 256 (556)
T ss_dssp -------------------------------------------------------------------
T ss_pred ceEhhhhccc-------ceEEecCCCCHHHHHHHHHHccccceeEE--ccCCcEEEEEEechhhhhh
Confidence 4689999998 89999999999999999999999999999 7899999999999998753
No 121
>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1
Probab=97.99 E-value=9.3e-07 Score=72.56 Aligned_cols=61 Identities=23% Similarity=0.382 Sum_probs=4.6
Q ss_pred cCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHH
Q 032497 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII 120 (139)
Q Consensus 53 ~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~ 120 (139)
..++.++|++.. ++.++++++++.++++.|.++++..+||+ |++++++|+||..|+++.+.
T Consensus 154 ~~~v~~im~~~~-----~~~~v~~~~~l~ea~~~m~~~~~~~lpVV--d~~g~lvGiIt~~Dll~~~~ 214 (494)
T 1vrd_A 154 SKKIKDLMTPRE-----KLIVAPPDISLEKAKEILHQHRIEKLPLV--SKDNKLVGLITIKDIMSVIE 214 (494)
T ss_dssp --------------------------------------------------------------CHHHHT
T ss_pred CCcHHHHhCCCC-----CCeEECCCCCHHHHHHHHHHcCCcEEEEE--cCCCeEEEEEEHHHHHhhhc
Confidence 357889998521 48899999999999999999999999999 78899999999999998763
No 122
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=97.98 E-value=3e-07 Score=75.95 Aligned_cols=70 Identities=17% Similarity=0.242 Sum_probs=27.1
Q ss_pred cHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCC---CCceEEEEeHHHHHHHHHHcCCCCccCcc
Q 032497 55 TISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGE---QKSVAGIITERDYLRKIIVQGRSSKSTKV 131 (139)
Q Consensus 55 ~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~---~~~lvGivt~~dll~~~~~~~~~~~~~~v 131 (139)
++.++|.+ ++.++.+++++.+|+++|.+++++.+||+ |+ +++++|+||.+|+.... +.. ...++
T Consensus 109 ~~~~im~~-------~~~~v~~~~tv~ea~~~m~~~~~~~~pVv--d~~~~~~~lvGiVt~~Dl~~~~---~~~-~~~~v 175 (514)
T 1jcn_A 109 NFEQGFIT-------DPVVLSPSHTVGDVLEAKMRHGFSGIPIT--ETGTMGSKLVGIVTSRDIDFLA---EKD-HTTLL 175 (514)
T ss_dssp TCCTTSCS-------SCCCCCC-----------------CEESC--C--------CCEECTTTTC---------------
T ss_pred hhhhcccc-------CCEEECCCCCHHHHHHHHHhcCCCEEEEE--eCCCcCCEEEEEEEHHHHHhhh---hcc-CCCCH
Confidence 45577776 78999999999999999999999999999 55 58999999999996531 111 35678
Q ss_pred cccccc
Q 032497 132 GDIMTE 137 (139)
Q Consensus 132 ~~im~~ 137 (139)
.++|++
T Consensus 176 ~~vm~~ 181 (514)
T 1jcn_A 176 SEVMTP 181 (514)
T ss_dssp -----C
T ss_pred HHHhCC
Confidence 888875
No 123
>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1
Probab=97.98 E-value=9.1e-07 Score=72.63 Aligned_cols=58 Identities=21% Similarity=0.333 Sum_probs=0.0
Q ss_pred cCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHH
Q 032497 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKI 119 (139)
Q Consensus 53 ~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~ 119 (139)
..++.++|++ ++.++++++++.++++.|.+++.+.+||+ |++++++|+||.+|+++..
T Consensus 149 ~~~v~~im~~-------~~~~v~~~~~l~eal~~m~~~~~~~lpVV--de~g~lvGiiT~~Dil~~~ 206 (486)
T 2cu0_A 149 GKLVKELMTK-------EVITVPESIEVEEALKIMIENRIDRLPVV--DERGKLVGLITMSDLVARK 206 (486)
T ss_dssp -------------------------------------------------------------------
T ss_pred CCCHHHHccC-------CCeEECCcCcHHHHHHHHHHcCCCEEEEE--ecCCeEEEEEEHHHHHHhh
Confidence 4578899997 78999999999999999999999999999 7889999999999998864
No 124
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}
Probab=97.93 E-value=1e-06 Score=72.63 Aligned_cols=61 Identities=16% Similarity=0.298 Sum_probs=42.6
Q ss_pred ccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHH
Q 032497 52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKI 119 (139)
Q Consensus 52 ~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~ 119 (139)
...++.++|+++. ++.++++++++.+++++|.++++..+||+ |++|+++|+||.+|+++..
T Consensus 147 ~~~~v~diM~p~~-----~~vtv~~~~~l~ea~~~m~~~~i~~lpVV--De~G~l~GiIT~~DIl~~~ 207 (496)
T 4fxs_A 147 LTKSVAAVMTPKE-----RLATVKEGATGAEVQEKMHKARVEKILVV--NDEFQLKGMITAKDFHKAE 207 (496)
T ss_dssp TTSBGGGTSEEGG-----GCCEEECC----CGGGTCC---CCCEEEE--CTTSBCCEEECCC-----C
T ss_pred CCCcHHHHhcCCC-----CCEEECCCCCHHHHHHHHHHcCCCEEEEE--cCCCCEEEeehHhHHHHhh
Confidence 3568999999321 38999999999999999999999999999 7899999999999998753
No 125
>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1
Probab=97.78 E-value=2.4e-06 Score=70.07 Aligned_cols=64 Identities=28% Similarity=0.389 Sum_probs=0.8
Q ss_pred HHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCCCCccCcccccc
Q 032497 56 ISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIM 135 (139)
Q Consensus 56 v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~~~~~~~v~~im 135 (139)
+.++|.. ++.++.+++++.++++.|.+++++.+||+ ++ ++++|+||.+|++. . .+.++.++|
T Consensus 95 ~~~~m~~-------~~~~v~~~~tv~ea~~~~~~~~~~~~pVv--d~-~~lvGivt~~Dl~~-------~-~~~~v~~im 156 (486)
T 2cu0_A 95 AERLIVE-------DVITIAPDETVDFALFLMEKHGIDGLPVV--ED-EKVVGIITKKDIAA-------R-EGKLVKELM 156 (486)
T ss_dssp CC------------------------------------------------------------------------------
T ss_pred hhhcccc-------CceEECCCCCHHHHHHHHHHcCCcEEEEE--EC-CEEEEEEEHHHhcc-------C-CCCCHHHHc
Confidence 3456776 89999999999999999999999999999 55 99999999999864 1 345677777
Q ss_pred cc
Q 032497 136 TE 137 (139)
Q Consensus 136 ~~ 137 (139)
++
T Consensus 157 ~~ 158 (486)
T 2cu0_A 157 TK 158 (486)
T ss_dssp --
T ss_pred cC
Confidence 64
No 126
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=97.55 E-value=2.3e-06 Score=70.65 Aligned_cols=60 Identities=17% Similarity=0.284 Sum_probs=41.3
Q ss_pred cCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHH
Q 032497 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKI 119 (139)
Q Consensus 53 ~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~ 119 (139)
..++.++|++.. ++.++++++++.+|+++|.+++...+||+ |++++++|+||++|+++.+
T Consensus 172 ~~~v~~vm~~~~-----~~~tv~~~~~l~ea~~~m~~~~~~~lpVV--d~~g~lvGiIt~~Dll~~~ 231 (514)
T 1jcn_A 172 TTLLSEVMTPRI-----ELVVAPAGVTLKEANEILQRSKKGKLPIV--NDCDELVAIIARTDLKKNR 231 (514)
T ss_dssp ---------CCB-----CCCCEETTCCSTTTTTHHHHHTCSCCCEE--SSSSCCC----CCCCSSCC
T ss_pred CCCHHHHhCCCC-----CCeEECCCCCHHHHHHHHHHcCCCcccEE--CCCCeEEEEEEHHHHHHHh
Confidence 467888998521 47899999999999999999999999999 7889999999999997654
No 127
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=87.46 E-value=0.2 Score=30.87 Aligned_cols=35 Identities=11% Similarity=0.232 Sum_probs=32.2
Q ss_pred hhHHHHHhhcCCCchHHHHhhhCCccccccchhhh
Q 032497 2 QGAIQSFLSHGNIVKSAVLQRIRLVNPMLRPVVSS 36 (139)
Q Consensus 2 ~~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~d~~~ 36 (139)
++|++.+..++.++-.+++++++++..+++.|+..
T Consensus 5 ~~Il~~L~~~g~vsv~eLa~~l~VS~~TIRrdL~~ 39 (78)
T 1xn7_A 5 IQVRDLLALRGRMEAAQISQTLNTPQPMINAMLQQ 39 (78)
T ss_dssp HHHHHHHHHSCSBCHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcHHHHHHHHCcCHHHHHHHHHH
Confidence 68999999999999999999999999999988843
No 128
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=86.65 E-value=0.27 Score=31.06 Aligned_cols=36 Identities=8% Similarity=0.259 Sum_probs=32.8
Q ss_pred ChhHHHHHhhcCCCchHHHHhhhCCccccccchhhh
Q 032497 1 MQGAIQSFLSHGNIVKSAVLQRIRLVNPMLRPVVSS 36 (139)
Q Consensus 1 ~~~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~d~~~ 36 (139)
+++|++.+..++.++-.++++.++++..++|.|+..
T Consensus 4 L~~Il~~L~~~g~vsv~eLA~~l~VS~~TIRrDL~~ 39 (87)
T 2k02_A 4 LMEVRDMLALQGRMEAKQLSARLQTPQPLIDAMLER 39 (87)
T ss_dssp THHHHHHHHHSCSEEHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHCcCHHHHHHHHHH
Confidence 478999999999999999999999999999988844
No 129
>1tif_A IF3-N, translation initiation factor 3; IF3 N-terminal domain, ribosome binding factor; 1.80A {Geobacillus stearothermophilus} SCOP: d.15.8.1
Probab=75.82 E-value=7.1 Score=23.94 Aligned_cols=30 Identities=10% Similarity=0.163 Sum_probs=22.2
Q ss_pred CEEEEEecCCCCceEEEEeHHHHHHHHHHcCC
Q 032497 93 GALVVVKPGEQKSVAGIITERDYLRKIIVQGR 124 (139)
Q Consensus 93 ~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~ 124 (139)
..+=++ |++|..+|+++..+-++..-..+.
T Consensus 14 ~eVrli--~~~Ge~lGv~~~~eAl~~A~e~~L 43 (78)
T 1tif_A 14 REVRLI--DQNGDQLGIKSKQEALEIAARRNL 43 (78)
T ss_dssp SEEEEE--CTTSCEEEEEEHHHHHHHHHHTTC
T ss_pred CEEEEE--CCCCcCCCcccHHHHHHHHHHcCC
Confidence 446677 788999999999998876654443
No 130
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=57.59 E-value=3.8 Score=24.89 Aligned_cols=35 Identities=9% Similarity=0.023 Sum_probs=28.9
Q ss_pred hhHHHHHhhc------CCCchHHHHhhhCCccccccchhhh
Q 032497 2 QGAIQSFLSH------GNIVKSAVLQRIRLVNPMLRPVVSS 36 (139)
Q Consensus 2 ~~~~~~~~~~------~~i~~~~v~~~~~~~~~~~~~d~~~ 36 (139)
++|++.++.. ++.+-.+++++++++..+.+.++..
T Consensus 7 ~~IL~~I~~~i~~~~g~~psv~EIa~~lgvS~~TVrr~L~~ 47 (77)
T 2jt1_A 7 TKIISIVQERQNMDDGAPVKTRDIADAAGLSIYQVRLYLEQ 47 (77)
T ss_dssp HHHHHHHHHHHHHHTTSCEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccCCCcCHHHHHHHHCCCHHHHHHHHHH
Confidence 5788888887 9999999999999987777766643
No 131
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=55.95 E-value=5.6 Score=24.34 Aligned_cols=34 Identities=9% Similarity=0.119 Sum_probs=29.7
Q ss_pred hhHHHHHhhcCCCchHHHHhhhCCccc-cccchhh
Q 032497 2 QGAIQSFLSHGNIVKSAVLQRIRLVNP-MLRPVVS 35 (139)
Q Consensus 2 ~~~~~~~~~~~~i~~~~v~~~~~~~~~-~~~~d~~ 35 (139)
+.|++.++.+++.+...+++.++++.. ..+..+.
T Consensus 14 ~~IL~~Lk~~g~~ta~eiA~~Lgit~~~aVr~hL~ 48 (79)
T 1xmk_A 14 EKICDYLFNVSDSSALNLAKNIGLTKARDINAVLI 48 (79)
T ss_dssp HHHHHHHHHTCCEEHHHHHHHHCGGGHHHHHHHHH
T ss_pred HHHHHHHHHcCCcCHHHHHHHcCCCcHHHHHHHHH
Confidence 478999999999999999999999888 7776653
No 132
>4a0z_A Transcription factor FAPR; lipid homeostasis; HET: MLC; 1.90A {Staphylococcus aureus} PDB: 4a0y_A 4a0x_A* 4a12_A
Probab=54.59 E-value=5.9 Score=28.14 Aligned_cols=35 Identities=11% Similarity=0.002 Sum_probs=32.4
Q ss_pred hhHHHHHhhcCCCchHHHHhhhCCccccccchhhh
Q 032497 2 QGAIQSFLSHGNIVKSAVLQRIRLVNPMLRPVVSS 36 (139)
Q Consensus 2 ~~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~d~~~ 36 (139)
+.|++.+..++.++-..+++.++++..++|.|+..
T Consensus 15 ~~i~~~l~~~~~~~~~~la~~~~vs~~TiRrDl~e 49 (190)
T 4a0z_A 15 EAIRQQIDSNPFITDHELSDLFQVSIQTIRLDRTY 49 (190)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCEeHHHHHHHHCCCHHHHHHHHHH
Confidence 57899999999999999999999999999998866
No 133
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=54.50 E-value=6.8 Score=23.28 Aligned_cols=33 Identities=6% Similarity=0.079 Sum_probs=27.9
Q ss_pred hhHHHHHhhcCCCchHHHHhhhCCccccccchh
Q 032497 2 QGAIQSFLSHGNIVKSAVLQRIRLVNPMLRPVV 34 (139)
Q Consensus 2 ~~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~d~ 34 (139)
+.|++.+...++++..++++.++++...++..+
T Consensus 3 ~~Il~~L~~~~~~s~~eLa~~lgvs~~tv~r~L 35 (81)
T 2htj_A 3 NEILEFLNRHNGGKTAEIAEALAVTDYQARYYL 35 (81)
T ss_dssp HHHHHHHHHSCCCCHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHH
Confidence 468888888899999999999999888776555
No 134
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=48.75 E-value=6.1 Score=22.95 Aligned_cols=32 Identities=13% Similarity=0.255 Sum_probs=25.3
Q ss_pred hHHHHHhhc-CCCchHHHHhhhCCccccccchh
Q 032497 3 GAIQSFLSH-GNIVKSAVLQRIRLVNPMLRPVV 34 (139)
Q Consensus 3 ~~~~~~~~~-~~i~~~~v~~~~~~~~~~~~~d~ 34 (139)
+|++.+... .++++.++++.+++++.++...+
T Consensus 14 ~IL~~L~~~~~~~s~~eLA~~lglsr~tv~~~l 46 (67)
T 2heo_A 14 KILQVLSDDGGPVAIFQLVKKCQVPKKTLNQVL 46 (67)
T ss_dssp HHHHHHHHHCSCEEHHHHHHHHCSCHHHHHHHH
T ss_pred HHHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHH
Confidence 688888765 57999999999999877655443
No 135
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=46.11 E-value=8.9 Score=23.39 Aligned_cols=33 Identities=9% Similarity=0.107 Sum_probs=27.5
Q ss_pred hhHHHHHhhcC---CCchHHHHhhhCCccccccchh
Q 032497 2 QGAIQSFLSHG---NIVKSAVLQRIRLVNPMLRPVV 34 (139)
Q Consensus 2 ~~~~~~~~~~~---~i~~~~v~~~~~~~~~~~~~d~ 34 (139)
+.|++.++..+ .++...+|+.+++++..++..+
T Consensus 13 ~~IL~~L~~~~pg~~~t~~eLA~~Lgvsr~tV~~~L 48 (81)
T 1qbj_A 13 QRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVL 48 (81)
T ss_dssp HHHHHHHHHHCTTCCBCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHH
Confidence 46888899888 8999999999999887666554
No 136
>3r8s_H 50S ribosomal protein L9; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_F 1p86_F 1vs8_H 1vs6_H 2aw4_H 2awb_H 2gya_F 2gyc_F 1vt2_H 2i2v_H 2j28_H 2i2t_H* 2qao_H* 2qba_H* 2qbc_H* 2qbe_H 2qbg_H 2qbi_H* 2qbk_H* 2qov_H ...
Probab=43.18 E-value=30 Score=23.59 Aligned_cols=26 Identities=27% Similarity=0.442 Sum_probs=20.8
Q ss_pred ecCCCCceEEEEeHHHHHHHHHHcCC
Q 032497 99 KPGEQKSVAGIITERDYLRKIIVQGR 124 (139)
Q Consensus 99 ~~d~~~~lvGivt~~dll~~~~~~~~ 124 (139)
..+++|++.|-||..||..++...|.
T Consensus 83 k~g~~gklfGSVt~~dIa~al~~~g~ 108 (149)
T 3r8s_H 83 KAGDEGKLFGSIGTRDIADAVTAAGV 108 (149)
T ss_dssp CBCTTSEEEEEECHHHHHHHHHTTSC
T ss_pred EcCCCCceEcccCHHHHHHHHHHcCC
Confidence 33578999999999999998865543
No 137
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=42.65 E-value=14 Score=20.46 Aligned_cols=32 Identities=3% Similarity=0.075 Sum_probs=24.9
Q ss_pred HHHHHhhcCCCchHHHHhhh-----CCccccccchhh
Q 032497 4 AIQSFLSHGNIVKSAVLQRI-----RLVNPMLRPVVS 35 (139)
Q Consensus 4 ~~~~~~~~~~i~~~~v~~~~-----~~~~~~~~~d~~ 35 (139)
|..++..++.++...+++.+ +++..+++.++-
T Consensus 10 i~~ll~~~~~~t~~el~~~l~~~~~~vs~~Tv~R~L~ 46 (64)
T 2p5k_A 10 IREIITSNEIETQDELVDMLKQDGYKVTQATVSRDIK 46 (64)
T ss_dssp HHHHHHHSCCCSHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHHHcCCCCCHHHHHHHHHHhCCCcCHHHHHHHHH
Confidence 45677788999999999999 777776665553
No 138
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=41.36 E-value=14 Score=21.38 Aligned_cols=27 Identities=4% Similarity=-0.150 Sum_probs=22.3
Q ss_pred HHHHHhhcCCCchHHHHhhhCCccccc
Q 032497 4 AIQSFLSHGNIVKSAVLQRIRLVNPML 30 (139)
Q Consensus 4 ~~~~~~~~~~i~~~~v~~~~~~~~~~~ 30 (139)
-|+.+|...+++..++|+.++++...+
T Consensus 15 ~lr~~R~~~gltq~elA~~~gvs~~ti 41 (73)
T 3fmy_A 15 FIVKVRKKLSLTQKEASEIFGGGVNAF 41 (73)
T ss_dssp HHHHHHHHTTCCHHHHHHHHCSCTTHH
T ss_pred HHHHHHHHcCCCHHHHHHHhCcCHHHH
Confidence 367888999999999999999866543
No 139
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=39.88 E-value=7 Score=22.91 Aligned_cols=29 Identities=3% Similarity=0.038 Sum_probs=23.5
Q ss_pred hhHHHHHhhcCCCchHHHHhhhCCccccc
Q 032497 2 QGAIQSFLSHGNIVKSAVLQRIRLVNPML 30 (139)
Q Consensus 2 ~~~~~~~~~~~~i~~~~v~~~~~~~~~~~ 30 (139)
...++..|...+++...+|+.++++...+
T Consensus 14 ~~~l~~~r~~~gltq~~lA~~~gvs~~~i 42 (80)
T 3kz3_A 14 KAIWEKKKNELGLSYESVADKMGMGQSAV 42 (80)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHhCcCHHHH
Confidence 35677888889999999999999865543
No 140
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=39.15 E-value=11 Score=22.65 Aligned_cols=32 Identities=9% Similarity=0.092 Sum_probs=26.2
Q ss_pred hhHHHHHhhcC---CCchHHHHhhhCCccccccch
Q 032497 2 QGAIQSFLSHG---NIVKSAVLQRIRLVNPMLRPV 33 (139)
Q Consensus 2 ~~~~~~~~~~~---~i~~~~v~~~~~~~~~~~~~d 33 (139)
+.|++.++..+ .++..++|+.+++++..++..
T Consensus 17 ~~IL~~L~~~~~~~~~t~~eLA~~Lgvs~~tV~~~ 51 (77)
T 1qgp_A 17 QRILKFLEELGEGKATTAHDLSGKLGTPKKEINRV 51 (77)
T ss_dssp HHHHHHHHHHCSSSCEEHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHH
Confidence 46788888888 899999999999987765543
No 141
>3k2t_A LMO2511 protein; listeria monocytogenes,binding, structural genomics, PSI-2, protein structure initiative; 2.40A {Listeria monocytogenes}
Probab=38.62 E-value=44 Score=18.98 Aligned_cols=35 Identities=14% Similarity=0.053 Sum_probs=25.4
Q ss_pred CCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeH
Q 032497 76 TDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITE 112 (139)
Q Consensus 76 ~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~ 112 (139)
+-+|+.||+..|.-.+.+.+... |.+..-+-+|.+
T Consensus 11 kpmsveEAv~qmel~gh~F~vF~--n~~t~~~nVvYr 45 (57)
T 3k2t_A 11 KPMDSEEAVLQMNLLGHSFYVYT--DAETNGTNIVYS 45 (57)
T ss_dssp CCBCHHHHHHHHHHHTCSEEEEE--BSSSCCEEEEEE
T ss_pred CCCCHHHHHHHHHhCCCcEEEEE--cCCCCCEEEEEE
Confidence 67899999999999999888888 433233344443
No 142
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=36.78 E-value=16 Score=25.38 Aligned_cols=34 Identities=0% Similarity=0.126 Sum_probs=28.6
Q ss_pred hhHHHHHhhc-CCCchHHHHhhhCCccccccchhh
Q 032497 2 QGAIQSFLSH-GNIVKSAVLQRIRLVNPMLRPVVS 35 (139)
Q Consensus 2 ~~~~~~~~~~-~~i~~~~v~~~~~~~~~~~~~d~~ 35 (139)
..|++.++.. ..++..++++.++++..+++.++.
T Consensus 24 ~~Il~~L~~~~~~~s~~eLa~~l~vS~~Ti~rdi~ 58 (187)
T 1j5y_A 24 KSIVRILERSKEPVSGAQLAEELSVSRQVIVQDIA 58 (187)
T ss_dssp HHHHHHHHHCSSCBCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHHH
Confidence 4688888864 569999999999999999888774
No 143
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=36.40 E-value=15 Score=28.01 Aligned_cols=35 Identities=3% Similarity=-0.020 Sum_probs=30.9
Q ss_pred hhHHHHHhhcCCCchHHHHhhhCCccccccchhhh
Q 032497 2 QGAIQSFLSHGNIVKSAVLQRIRLVNPMLRPVVSS 36 (139)
Q Consensus 2 ~~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~d~~~ 36 (139)
+.|++.+..++.++..++++.+++++.+++.++..
T Consensus 8 ~~Il~~L~~~~~~s~~eLa~~l~vS~~ti~r~l~~ 42 (321)
T 1bia_A 8 LKLIALLANGEFHSGEQLGETLGMSRAAINKHIQT 42 (321)
T ss_dssp HHHHHHHTTSSCBCHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCcCHHHHHHHHCCCHHHHHHHHHH
Confidence 36889998888999999999999999998887754
No 144
>1b4a_A Arginine repressor; helix turn helix; 2.50A {Geobacillus stearothermophilus} SCOP: a.4.5.3 d.74.2.1 PDB: 1f9n_A
Probab=35.82 E-value=18 Score=24.65 Aligned_cols=35 Identities=6% Similarity=0.128 Sum_probs=29.9
Q ss_pred hhHHHHHhhcCCCchHHHHhhh-----CCccccccchhhh
Q 032497 2 QGAIQSFLSHGNIVKSAVLQRI-----RLVNPMLRPVVSS 36 (139)
Q Consensus 2 ~~~~~~~~~~~~i~~~~v~~~~-----~~~~~~~~~d~~~ 36 (139)
+.|.+++..++..+..++++.+ .++.++++.|+..
T Consensus 8 ~~I~~li~~~~~~tq~eL~~~L~~~G~~VtqaTisRDL~e 47 (149)
T 1b4a_A 8 IKIREIIMSNDIETQDELVDRLREAGFNVTQATVSRDIKE 47 (149)
T ss_dssp HHHHHHHHHSCCCSHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCccHHHHHHHHHHcCCCcCHHHHHHHHHH
Confidence 3688899999999999999999 7888877777754
No 145
>4ghj_A Probable transcriptional regulator; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE; 1.75A {Vibrio vulnificus}
Probab=35.22 E-value=14 Score=23.30 Aligned_cols=27 Identities=7% Similarity=0.122 Sum_probs=23.1
Q ss_pred HHHHHhhcCCCchHHHHhhhCCccccc
Q 032497 4 AIQSFLSHGNIVKSAVLQRIRLVNPML 30 (139)
Q Consensus 4 ~~~~~~~~~~i~~~~v~~~~~~~~~~~ 30 (139)
-|+..|...++++..+|+..+++...+
T Consensus 40 ~ir~~R~~~glTQ~eLA~~~gvs~~~i 66 (101)
T 4ghj_A 40 RLKQARLNRDLTQSEVAEIAGIARKTV 66 (101)
T ss_dssp HHHHHHHHTTCCHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHcCCCHHHH
Confidence 477889999999999999999876654
No 146
>3ka5_A Ribosome-associated protein Y (PSRP-1); structural genomics, PSI-2, protein structure initiative; 1.80A {Clostridium acetobutylicum}
Probab=34.22 E-value=55 Score=19.14 Aligned_cols=35 Identities=11% Similarity=0.070 Sum_probs=25.6
Q ss_pred CCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeH
Q 032497 76 TDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITE 112 (139)
Q Consensus 76 ~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~ 112 (139)
+.+|+.||+..|.-.+.+.++..+ .+..-+-+|.+
T Consensus 11 kpMsveEAv~qmel~gh~F~vF~n--~etg~~nVVYR 45 (65)
T 3ka5_A 11 KPMSEEEAVLEMELLGHNFFVFQN--GDSNEVNVVYK 45 (65)
T ss_dssp SCBCHHHHHHHHHHHTCSEEEEEE--TTTTEEEEEEE
T ss_pred CCCCHHHHHHHHHhCCCcEEEEEe--CCCCCEEEEEE
Confidence 568999999999999988888884 44333445544
No 147
>1p0z_A Sensor kinase CITA; transferase; HET: FLC MO7; 1.60A {Klebsiella pneumoniae} SCOP: d.110.6.1 PDB: 2v9a_A 2j80_A*
Probab=32.65 E-value=37 Score=21.72 Aligned_cols=16 Identities=19% Similarity=0.266 Sum_probs=13.0
Q ss_pred EEEEecCCCCceEEEEeH
Q 032497 95 LVVVKPGEQKSVAGIITE 112 (139)
Q Consensus 95 lpVv~~d~~~~lvGivt~ 112 (139)
.||. +++|+++|+|+.
T Consensus 106 ~PV~--~~~g~viGvv~v 121 (131)
T 1p0z_A 106 SPIQ--DATGKVIGIVSV 121 (131)
T ss_dssp EEEE--CTTCCEEEEEEE
T ss_pred EeEE--CCCCCEEEEEEE
Confidence 5888 668999999874
No 148
>1div_A Ribosomal protein L9; rRNA-binding; 2.60A {Geobacillus stearothermophilus} SCOP: d.99.1.1 d.100.1.1 PDB: 1giy_K 1yl3_K 2b66_I 2b9n_I 2b9p_I 487d_K
Probab=32.62 E-value=40 Score=22.97 Aligned_cols=26 Identities=27% Similarity=0.381 Sum_probs=20.8
Q ss_pred cCCCCceEEEEeHHHHHHHHHHc-CCC
Q 032497 100 PGEQKSVAGIITERDYLRKIIVQ-GRS 125 (139)
Q Consensus 100 ~d~~~~lvGivt~~dll~~~~~~-~~~ 125 (139)
.+++|++.|-||..||..++... |..
T Consensus 83 ~g~~gklfGSVt~~dIa~al~~~~g~~ 109 (149)
T 1div_A 83 AGEGGRLFGSITSKQIAESLQAQHGLK 109 (149)
T ss_dssp BCGGGEEEEEECHHHHHHHHHHHHCCC
T ss_pred eCCCCcEEeecCHHHHHHHHHHhhCCe
Confidence 35689999999999999888655 543
No 149
>3tjo_A Serine protease HTRA1; peptidase, hydrolase; HET: BOG; 2.30A {Homo sapiens} PDB: 3tjn_A 3nwu_A
Probab=32.59 E-value=28 Score=24.91 Aligned_cols=21 Identities=24% Similarity=0.061 Sum_probs=17.5
Q ss_pred cCCCEEEEEecCCCCceEEEEeH
Q 032497 90 HNVGALVVVKPGEQKSVAGIITE 112 (139)
Q Consensus 90 ~~~~~lpVv~~d~~~~lvGivt~ 112 (139)
.|-+.=|++ |.+|+++||++.
T Consensus 186 ~G~SGGPLv--~~~G~vVGI~s~ 206 (231)
T 3tjo_A 186 YGNAGGPLV--NLDGEVIGINTL 206 (231)
T ss_dssp TTTTTSEEE--CTTSCEEEEEEE
T ss_pred CCCchhHee--cCCCeEEEEEeE
Confidence 466778999 778999999985
No 150
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=32.07 E-value=14 Score=22.75 Aligned_cols=32 Identities=9% Similarity=0.174 Sum_probs=25.5
Q ss_pred hhHHHHHhhcCCCchHHHHhhhCCccccccchh
Q 032497 2 QGAIQSFLSHGNIVKSAVLQRIRLVNPMLRPVV 34 (139)
Q Consensus 2 ~~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~d~ 34 (139)
+.|++.++..+ ++..+++..+++++...+.-+
T Consensus 20 ~~IL~lL~~~g-~sa~eLAk~LgiSk~aVr~~L 51 (82)
T 1oyi_A 20 CEAIKTIGIEG-ATAAQLTRQLNMEKREVNKAL 51 (82)
T ss_dssp HHHHHHHSSST-EEHHHHHHHSSSCHHHHHHHH
T ss_pred HHHHHHHHHcC-CCHHHHHHHHCcCHHHHHHHH
Confidence 46888888666 999999999999887766444
No 151
>3by8_A Sensor protein DCUS; histidine kinase sensor domain, inner membrane, membrane, phosphoprotein, transferase, transmembrane; 1.45A {Escherichia coli} SCOP: d.110.6.1 PDB: 1ojg_A
Probab=31.81 E-value=39 Score=22.04 Aligned_cols=19 Identities=11% Similarity=0.085 Sum_probs=14.3
Q ss_pred EEEEecCCCCceEEEEeHHHH
Q 032497 95 LVVVKPGEQKSVAGIITERDY 115 (139)
Q Consensus 95 lpVv~~d~~~~lvGivt~~dl 115 (139)
.||. +++|+++|+|+..-.
T Consensus 111 ~PV~--~~~g~viGvv~vg~~ 129 (142)
T 3by8_A 111 TPIY--DENHKQIGVVAIGLE 129 (142)
T ss_dssp EEEE--CTTSCEEEEEEEEEE
T ss_pred EeEE--cCCCCEEEEEEEeEE
Confidence 5888 567999999875433
No 152
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=30.70 E-value=22 Score=19.50 Aligned_cols=28 Identities=7% Similarity=0.102 Sum_probs=22.7
Q ss_pred hHHHHHhhcCCCchHHHHhhhCCccccc
Q 032497 3 GAIQSFLSHGNIVKSAVLQRIRLVNPML 30 (139)
Q Consensus 3 ~~~~~~~~~~~i~~~~v~~~~~~~~~~~ 30 (139)
+.|+..|...+++...+++.++++...+
T Consensus 4 ~~l~~~r~~~glsq~~lA~~~gis~~~i 31 (69)
T 1r69_A 4 SRVKSKRIQLGLNQAELAQKVGTTQQSI 31 (69)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHCcCHHHH
Confidence 4577888889999999999998865543
No 153
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=30.42 E-value=23 Score=19.61 Aligned_cols=28 Identities=0% Similarity=0.007 Sum_probs=22.6
Q ss_pred hHHHHHhhcCCCchHHHHhhhCCccccc
Q 032497 3 GAIQSFLSHGNIVKSAVLQRIRLVNPML 30 (139)
Q Consensus 3 ~~~~~~~~~~~i~~~~v~~~~~~~~~~~ 30 (139)
+.|+..|...+++...+++.++++...+
T Consensus 6 ~~l~~~r~~~glsq~~lA~~~gis~~~i 33 (71)
T 1zug_A 6 ERLKKRRIALKMTQTELATKAGVKQQSI 33 (71)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHhCCCHHHH
Confidence 4577788889999999999999865543
No 154
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=30.21 E-value=25 Score=22.67 Aligned_cols=27 Identities=4% Similarity=-0.150 Sum_probs=22.3
Q ss_pred HHHHHhhcCCCchHHHHhhhCCccccc
Q 032497 4 AIQSFLSHGNIVKSAVLQRIRLVNPML 30 (139)
Q Consensus 4 ~~~~~~~~~~i~~~~v~~~~~~~~~~~ 30 (139)
-|+.+|...++++.++|+.++++...+
T Consensus 75 ~l~~~R~~~glsq~~la~~~g~s~~~i 101 (133)
T 3o9x_A 75 FIVKVRKKLSLTQKEASEIFGGGVNAF 101 (133)
T ss_dssp HHHHHHHHTTCCHHHHHHHHCSCTTHH
T ss_pred HHHHHHHHcCCCHHHHHHHHCCCHHHH
Confidence 367788899999999999999876644
No 155
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=29.97 E-value=20 Score=19.43 Aligned_cols=27 Identities=7% Similarity=0.155 Sum_probs=21.6
Q ss_pred HHHHHhhcCCCchHHHHhhhCCccccc
Q 032497 4 AIQSFLSHGNIVKSAVLQRIRLVNPML 30 (139)
Q Consensus 4 ~~~~~~~~~~i~~~~v~~~~~~~~~~~ 30 (139)
-|+..|...+++...+++.++++...+
T Consensus 5 ~l~~~r~~~g~s~~~lA~~~gis~~~i 31 (66)
T 2xi8_A 5 NLKLIREKKKISQSELAALLEVSRQTI 31 (66)
T ss_dssp CHHHHHHHTTCCHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHCcCHHHH
Confidence 467788888999999999998865543
No 156
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=29.79 E-value=20 Score=20.88 Aligned_cols=27 Identities=11% Similarity=0.203 Sum_probs=22.5
Q ss_pred HHHHHhhcCCCchHHHHhhhCCccccc
Q 032497 4 AIQSFLSHGNIVKSAVLQRIRLVNPML 30 (139)
Q Consensus 4 ~~~~~~~~~~i~~~~v~~~~~~~~~~~ 30 (139)
-|+..|...+++...+|+.++++...+
T Consensus 14 ~ik~~R~~~gltq~elA~~~gis~~~i 40 (78)
T 3qq6_A 14 RIKQYRKEKGYSLSELAEKAGVAKSYL 40 (78)
T ss_dssp HHHHHHHHTTCCHHHHHHHHTCCHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHCcCHHHH
Confidence 477889999999999999999866544
No 157
>3lgi_A Protease DEGS; stress-sensor, HTRA, PDZ OMP, hydrolase, serine PR; 1.65A {Escherichia coli} PDB: 2qf3_A 2qf0_A 2rce_A* 3lh3_A* 3b8j_A 2qgr_A 3lh1_A 3lgy_A 3lgu_A 3lgv_A 3lgw_A 3lgt_A 2r3u_A
Probab=29.76 E-value=30 Score=24.73 Aligned_cols=22 Identities=23% Similarity=0.205 Sum_probs=18.2
Q ss_pred HcCCCEEEEEecCCCCceEEEEeH
Q 032497 89 QHNVGALVVVKPGEQKSVAGIITE 112 (139)
Q Consensus 89 ~~~~~~lpVv~~d~~~~lvGivt~ 112 (139)
..|-+.=|++ |.+|+++||++.
T Consensus 172 ~~G~SGGPlv--~~~G~vvGI~s~ 193 (237)
T 3lgi_A 172 NHGNSGGALV--NSLGELMGINTL 193 (237)
T ss_dssp CTTCTTCEEE--CTTCCEEEEECC
T ss_pred CCCCchHHee--CCCCeEEEEEee
Confidence 4577888999 679999999875
No 158
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=29.47 E-value=24 Score=20.01 Aligned_cols=28 Identities=11% Similarity=0.169 Sum_probs=22.8
Q ss_pred hHHHHHhhcCCCchHHHHhhhCCccccc
Q 032497 3 GAIQSFLSHGNIVKSAVLQRIRLVNPML 30 (139)
Q Consensus 3 ~~~~~~~~~~~i~~~~v~~~~~~~~~~~ 30 (139)
..|+..|...+++...+|+.++++...+
T Consensus 10 ~~l~~~r~~~g~sq~~lA~~~gis~~~i 37 (78)
T 3b7h_A 10 EHLMELITQQNLTINRVATLAGLNQSTV 37 (78)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHTCCHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHCcCHHHH
Confidence 3577888889999999999999866543
No 159
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=29.31 E-value=13 Score=21.39 Aligned_cols=28 Identities=7% Similarity=0.088 Sum_probs=23.3
Q ss_pred hHHHHHhhcCCCchHHHHhhhCCccccc
Q 032497 3 GAIQSFLSHGNIVKSAVLQRIRLVNPML 30 (139)
Q Consensus 3 ~~~~~~~~~~~i~~~~v~~~~~~~~~~~ 30 (139)
..|+.+|...+++...+|+.++++...+
T Consensus 5 ~~lk~~r~~~glsq~~lA~~~gis~~~i 32 (77)
T 2k9q_A 5 NELKVERIRLSLTAKSVAEEMGISRQQL 32 (77)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHhCCCHHHH
Confidence 4578888999999999999999866544
No 160
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=29.25 E-value=24 Score=19.68 Aligned_cols=27 Identities=4% Similarity=0.020 Sum_probs=21.8
Q ss_pred hHHHHHhhcCCCchHHHHhhhCCcccc
Q 032497 3 GAIQSFLSHGNIVKSAVLQRIRLVNPM 29 (139)
Q Consensus 3 ~~~~~~~~~~~i~~~~v~~~~~~~~~~ 29 (139)
..|+..|...+++...+++.++++...
T Consensus 16 ~~l~~~r~~~g~s~~~lA~~~gis~~~ 42 (74)
T 1y7y_A 16 QRLRELRTAKGLSQETLAFLSGLDRSY 42 (74)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHTCCHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHCcCHHH
Confidence 357778888999999999999876544
No 161
>1svj_A Potassium-transporting ATPase B chain; alpha-beta sandwich, hydrolase; NMR {Escherichia coli} SCOP: d.220.1.1 PDB: 1u7q_A 2a00_A* 2a29_A*
Probab=29.16 E-value=31 Score=23.51 Aligned_cols=33 Identities=33% Similarity=0.475 Sum_probs=26.1
Q ss_pred HHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHH
Q 032497 80 VYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDY 115 (139)
Q Consensus 80 l~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dl 115 (139)
+.+.++.+...|...+.|. .+++++|+|...|-
T Consensus 121 ~~~~~~~la~~G~T~v~VA---~d~~l~GvIalaD~ 153 (156)
T 1svj_A 121 VDQKVDQVARQGATPLVVV---EGSRVLGVIALKDI 153 (156)
T ss_dssp HHHHHHHHHHTTCEEEEEE---ETTEEEEEEEEEEC
T ss_pred HHHHHHHHHhCCCCEEEEE---ECCEEEEEEEEecC
Confidence 6777778888887777776 57899999987764
No 162
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=28.96 E-value=21 Score=21.81 Aligned_cols=27 Identities=7% Similarity=0.202 Sum_probs=22.4
Q ss_pred HHHHHhhcCCCchHHHHhhhCCccccc
Q 032497 4 AIQSFLSHGNIVKSAVLQRIRLVNPML 30 (139)
Q Consensus 4 ~~~~~~~~~~i~~~~v~~~~~~~~~~~ 30 (139)
-|+.+|...+++...+|+.++++...+
T Consensus 28 rLk~lR~~~glTq~eLA~~~GiS~~ti 54 (88)
T 3t76_A 28 KLWKLLIDRDMKKGELREAVGVSKSTF 54 (88)
T ss_dssp HHHHHHHHTTCCHHHHHHHHTCCHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHCcCHHHH
Confidence 367788899999999999999866654
No 163
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=28.92 E-value=24 Score=19.88 Aligned_cols=28 Identities=4% Similarity=0.134 Sum_probs=22.3
Q ss_pred hHHHHHhhcCCCchHHHHhhhCCccccc
Q 032497 3 GAIQSFLSHGNIVKSAVLQRIRLVNPML 30 (139)
Q Consensus 3 ~~~~~~~~~~~i~~~~v~~~~~~~~~~~ 30 (139)
..|+..|...+++...+++.++++...+
T Consensus 13 ~~l~~~r~~~glsq~~lA~~~gis~~~i 40 (77)
T 2b5a_A 13 RTLKKIRTQKGVSQEELADLAGLHRTYI 40 (77)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHTCCHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHCCCHHHH
Confidence 3567788889999999999998865543
No 164
>3k6y_A Serine protease, possible membrane-associated serine protease; oxidative stress, disulfide, BENT helix, HY protease; 1.30A {Mycobacterium tuberculosis} PDB: 3k6z_A 3lt3_A
Probab=28.59 E-value=36 Score=24.20 Aligned_cols=22 Identities=9% Similarity=0.105 Sum_probs=18.1
Q ss_pred cCCCEEEEEecCCCCceEEEEeHH
Q 032497 90 HNVGALVVVKPGEQKSVAGIITER 113 (139)
Q Consensus 90 ~~~~~lpVv~~d~~~~lvGivt~~ 113 (139)
.|-+.=|++ +.+|+++||++..
T Consensus 180 ~GdSGGPLv--~~~G~vvGI~s~~ 201 (237)
T 3k6y_A 180 QGDSGGPLI--DLNGQVLGVVFGA 201 (237)
T ss_dssp TTCTTCEEE--CTTSCEEEEEEEE
T ss_pred CCccHHHEE--CCCCEEEEEEEee
Confidence 577888999 6789999999863
No 165
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=28.20 E-value=29 Score=20.80 Aligned_cols=28 Identities=7% Similarity=0.241 Sum_probs=23.0
Q ss_pred hHHHHHhhcCCCchHHHHhhhCCccccc
Q 032497 3 GAIQSFLSHGNIVKSAVLQRIRLVNPML 30 (139)
Q Consensus 3 ~~~~~~~~~~~i~~~~v~~~~~~~~~~~ 30 (139)
..|+.+|...+++...+|+.++++...+
T Consensus 12 ~~lk~~r~~~glsq~~lA~~~gis~~~i 39 (94)
T 2kpj_A 12 ENLNSYIAKSEKTQLEIAKSIGVSPQTF 39 (94)
T ss_dssp HHHHHHHTTSSSCHHHHHHHHTCCHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHCcCHHHH
Confidence 3577888899999999999999876554
No 166
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=27.95 E-value=16 Score=20.73 Aligned_cols=27 Identities=7% Similarity=0.078 Sum_probs=21.6
Q ss_pred HHHHHhhcCCCchHHHHhhhCCccccc
Q 032497 4 AIQSFLSHGNIVKSAVLQRIRLVNPML 30 (139)
Q Consensus 4 ~~~~~~~~~~i~~~~v~~~~~~~~~~~ 30 (139)
-|+.+|...+++...+|+.++++...+
T Consensus 12 ~l~~~r~~~glsq~~lA~~~gis~~~i 38 (73)
T 3omt_A 12 RLKSVLAEKGKTNLWLTETLDKNKTTV 38 (73)
T ss_dssp CHHHHHHHHTCCHHHHHHHTTCCHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHCcCHHHH
Confidence 367778888999999999998865543
No 167
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=27.94 E-value=31 Score=20.18 Aligned_cols=28 Identities=11% Similarity=0.222 Sum_probs=22.7
Q ss_pred hHHHHHhhcCCCchHHHHhhhCCccccc
Q 032497 3 GAIQSFLSHGNIVKSAVLQRIRLVNPML 30 (139)
Q Consensus 3 ~~~~~~~~~~~i~~~~v~~~~~~~~~~~ 30 (139)
.-|+.+|...+++...+++.++++...+
T Consensus 21 ~~l~~~r~~~glsq~elA~~~gis~~~i 48 (83)
T 2a6c_A 21 IVLQEHLRNSGLTQFKAAELLGVTQPRV 48 (83)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHCcCHHHH
Confidence 3577888999999999999998865543
No 168
>3sti_A Protease DEGQ; serine protease, PDZ domain, chaperone, hydrolase; 2.60A {Escherichia coli}
Probab=27.91 E-value=37 Score=24.70 Aligned_cols=22 Identities=14% Similarity=0.129 Sum_probs=18.4
Q ss_pred HcCCCEEEEEecCCCCceEEEEeH
Q 032497 89 QHNVGALVVVKPGEQKSVAGIITE 112 (139)
Q Consensus 89 ~~~~~~lpVv~~d~~~~lvGivt~ 112 (139)
..|-+.=|++ |.+|+++||.|.
T Consensus 183 ~~G~SGGPLv--n~~G~vVGI~s~ 204 (245)
T 3sti_A 183 NRGNSGGALL--NLNGELIGINTA 204 (245)
T ss_dssp CTTTTTSEEE--CTTSCEEEEEEC
T ss_pred CCCcchhHee--cCCCeEEEEEEe
Confidence 3577888999 778999999885
No 169
>3lyv_A Ribosome-associated factor Y; ribosomal protein S30AE family, structural genomics, PSI-2, structure initiative; 2.70A {Streptococcus pyogenes}
Probab=27.21 E-value=57 Score=19.13 Aligned_cols=35 Identities=11% Similarity=0.087 Sum_probs=25.1
Q ss_pred CCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeH
Q 032497 76 TDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITE 112 (139)
Q Consensus 76 ~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~ 112 (139)
+.+|+.||+..|.-.+.+.++..+ .+..-+-+|.+
T Consensus 12 kpMsveEAv~qMel~gh~F~vF~n--~etg~~nVVYR 46 (66)
T 3lyv_A 12 KPMDVEEARLQMELLGHDFFIYTD--SEDGATNILYR 46 (66)
T ss_dssp CEECHHHHHHHHHTTTCSEEEEEE--TTTCSEEEEEE
T ss_pred CCCCHHHHHHHHHcCCCcEEEEEe--CCCCCEEEEEE
Confidence 567899999999999998888884 33223344443
No 170
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=27.09 E-value=27 Score=20.32 Aligned_cols=28 Identities=11% Similarity=0.226 Sum_probs=22.5
Q ss_pred hHHHHHhhcCCCchHHHHhhhCCccccc
Q 032497 3 GAIQSFLSHGNIVKSAVLQRIRLVNPML 30 (139)
Q Consensus 3 ~~~~~~~~~~~i~~~~v~~~~~~~~~~~ 30 (139)
..|+..|...+++...+|+.++++...+
T Consensus 15 ~~l~~~r~~~glsq~~lA~~~gis~~~i 42 (88)
T 2wiu_B 15 NAMKLVRQQNGWTQSELAKKIGIKQATI 42 (88)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHTCCHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHhCCCHHHH
Confidence 3577888889999999999998865543
No 171
>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A
Probab=27.02 E-value=34 Score=20.09 Aligned_cols=29 Identities=14% Similarity=0.150 Sum_probs=22.3
Q ss_pred hHHHHHhhcCCCchHHHHhhhCCccccccc
Q 032497 3 GAIQSFLSHGNIVKSAVLQRIRLVNPMLRP 32 (139)
Q Consensus 3 ~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~ 32 (139)
.|++.++ ..+++..++|+..+++..+++.
T Consensus 13 ri~~~l~-~~glT~~~LA~~~Gvs~stls~ 41 (74)
T 1neq_A 13 DVIAGLK-KRKLSLSALSRQFGYAPTTLAN 41 (74)
T ss_dssp HHHHHHH-TTSCCHHHHHHHHSSCHHHHHH
T ss_pred HHHHHHH-HcCCCHHHHHHHHCcCHHHHHH
Confidence 4555554 7789999999999998777653
No 172
>2w5e_A Putative serine protease; coiled coil, transmembrane, thiol protease, RNA replication, ribosomal frameshifting, catalytic triad, membrane; 2.00A {Human astrovirus 1}
Probab=26.86 E-value=37 Score=23.17 Aligned_cols=23 Identities=17% Similarity=0.133 Sum_probs=19.4
Q ss_pred HHcCCCEEEEEecCCCCceEEEEeH
Q 032497 88 TQHNVGALVVVKPGEQKSVAGIITE 112 (139)
Q Consensus 88 ~~~~~~~lpVv~~d~~~~lvGivt~ 112 (139)
...|-+.-|++ |.+|+++||.+.
T Consensus 122 i~pGnSGGPl~--n~~G~VVGI~~~ 144 (163)
T 2w5e_A 122 TQDGMSGAPVC--DKYCRVLAVHQT 144 (163)
T ss_dssp CSSCCTTCEEE--CTTSCEEEEEEE
T ss_pred eCCCCchhhEE--cCCCEEEEEEcc
Confidence 46778889999 789999999873
No 173
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=26.72 E-value=28 Score=20.08 Aligned_cols=28 Identities=7% Similarity=0.062 Sum_probs=22.6
Q ss_pred hHHHHHhhcCCCchHHHHhhhCCccccc
Q 032497 3 GAIQSFLSHGNIVKSAVLQRIRLVNPML 30 (139)
Q Consensus 3 ~~~~~~~~~~~i~~~~v~~~~~~~~~~~ 30 (139)
.-|+..|...+++...+|+.++++...+
T Consensus 14 ~~lk~~R~~~glsq~~lA~~~gis~~~i 41 (82)
T 3s8q_A 14 FVIKKIRLEKGMTQEDLAYKSNLDRTYI 41 (82)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHTCCHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHhCcCHHHH
Confidence 3467888899999999999998866543
No 174
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=26.60 E-value=29 Score=19.22 Aligned_cols=26 Identities=4% Similarity=0.087 Sum_probs=20.9
Q ss_pred hHHHHHhhcCCCchHHHHhhhC--Cccc
Q 032497 3 GAIQSFLSHGNIVKSAVLQRIR--LVNP 28 (139)
Q Consensus 3 ~~~~~~~~~~~i~~~~v~~~~~--~~~~ 28 (139)
..|+..|...+++...+++.++ ++..
T Consensus 11 ~~l~~~r~~~glsq~~lA~~~g~~is~~ 38 (71)
T 2ewt_A 11 AKLRAIRTQQGLSLHGVEEKSQGRWKAV 38 (71)
T ss_dssp HHHHHHHHHTTCCHHHHHHHTTTSSCHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHCCcCCHH
Confidence 3567788889999999999988 6544
No 175
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=25.67 E-value=22 Score=19.44 Aligned_cols=28 Identities=14% Similarity=0.099 Sum_probs=22.1
Q ss_pred hHHHHHhhcCCCchHHHHhhhCCccccc
Q 032497 3 GAIQSFLSHGNIVKSAVLQRIRLVNPML 30 (139)
Q Consensus 3 ~~~~~~~~~~~i~~~~v~~~~~~~~~~~ 30 (139)
..|+..|...+++...+++.++++...+
T Consensus 8 ~~l~~~r~~~g~s~~~lA~~~gis~~~i 35 (68)
T 2r1j_L 8 ERIRARRKKLKIRQAALGKMVGVSNVAI 35 (68)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHCCCHHHH
Confidence 3567788888999999999998865543
No 176
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=25.64 E-value=26 Score=19.66 Aligned_cols=27 Identities=7% Similarity=0.102 Sum_probs=21.7
Q ss_pred HHHHHhhcCCCchHHHHhhhCCccccc
Q 032497 4 AIQSFLSHGNIVKSAVLQRIRLVNPML 30 (139)
Q Consensus 4 ~~~~~~~~~~i~~~~v~~~~~~~~~~~ 30 (139)
-|+..|...+++...+++.++++...+
T Consensus 14 ~l~~~r~~~g~s~~~lA~~~gis~~~i 40 (76)
T 3bs3_A 14 RIKVVLAEKQRTNRWLAEQMGKSENTI 40 (76)
T ss_dssp CHHHHHHHTTCCHHHHHHHHTCCHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHCcCHHHH
Confidence 467788888999999999998865543
No 177
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=25.14 E-value=31 Score=19.78 Aligned_cols=28 Identities=7% Similarity=0.110 Sum_probs=22.7
Q ss_pred hHHHHHhhcCCCchHHHHhhhCCccccc
Q 032497 3 GAIQSFLSHGNIVKSAVLQRIRLVNPML 30 (139)
Q Consensus 3 ~~~~~~~~~~~i~~~~v~~~~~~~~~~~ 30 (139)
..|+..|...+++...+|+.++++...+
T Consensus 13 ~~l~~~r~~~glsq~~lA~~~gis~~~i 40 (84)
T 2ef8_A 13 QLLTKLRKEASLSQSELAIFLGLSQSDI 40 (84)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHTCCHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHhCCCHHHH
Confidence 3577888899999999999999866543
No 178
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=24.98 E-value=18 Score=21.50 Aligned_cols=28 Identities=4% Similarity=0.044 Sum_probs=21.7
Q ss_pred hHHHHHhhcCCCchHHHHhhhCCccccc
Q 032497 3 GAIQSFLSHGNIVKSAVLQRIRLVNPML 30 (139)
Q Consensus 3 ~~~~~~~~~~~i~~~~v~~~~~~~~~~~ 30 (139)
++++..|...+++...+|+.++++...+
T Consensus 20 ~~l~~~R~~~glsq~~lA~~~gis~~~i 47 (92)
T 1lmb_3 20 AIYEKKKNELGLSQESVADKMGMGQSGV 47 (92)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHCcCHHHH
Confidence 4566667888999999999998865543
No 179
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=24.95 E-value=38 Score=20.02 Aligned_cols=28 Identities=11% Similarity=0.101 Sum_probs=23.0
Q ss_pred hHHHHHhhcCCCchHHHHhhhCCccccc
Q 032497 3 GAIQSFLSHGNIVKSAVLQRIRLVNPML 30 (139)
Q Consensus 3 ~~~~~~~~~~~i~~~~v~~~~~~~~~~~ 30 (139)
..|+..|...+++...+++.++++...+
T Consensus 16 ~~l~~~r~~~glsq~~lA~~~gis~~~i 43 (91)
T 1x57_A 16 KVIQQGRQSKGLTQKDLATKINEKPQVI 43 (91)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHCcCHHHH
Confidence 4577888999999999999999866543
No 180
>2vid_A Serine protease SPLB; hydrolase; 1.80A {Staphylococcus aureus}
Probab=24.79 E-value=48 Score=22.53 Aligned_cols=22 Identities=14% Similarity=0.160 Sum_probs=17.1
Q ss_pred cCCCEEEEEecCCCCceEEEEeHH
Q 032497 90 HNVGALVVVKPGEQKSVAGIITER 113 (139)
Q Consensus 90 ~~~~~lpVv~~d~~~~lvGivt~~ 113 (139)
.|-+.=|++ +.+++++||++..
T Consensus 154 ~GdSGGPl~--~~~g~lvGI~s~g 175 (204)
T 2vid_A 154 SGNSGSPVL--NSNNELVGIHFAS 175 (204)
T ss_dssp GGGTTCEEE--CTTSCEEEEEEEE
T ss_pred CCCccCcEE--CCCCeEEEEEecC
Confidence 455667999 6688999999864
No 181
>3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomic binding; 1.80A {Silicibacter pomeroyi}
Probab=24.78 E-value=32 Score=20.35 Aligned_cols=27 Identities=4% Similarity=0.138 Sum_probs=21.9
Q ss_pred hHHHHHhhcCCCchHHHHhhhCCcccc
Q 032497 3 GAIQSFLSHGNIVKSAVLQRIRLVNPM 29 (139)
Q Consensus 3 ~~~~~~~~~~~i~~~~v~~~~~~~~~~ 29 (139)
..|+..|...+++...+++.++++...
T Consensus 17 ~~l~~~R~~~gltq~elA~~~gis~~~ 43 (86)
T 3eus_A 17 QRLRQARLDAGLTQADLAERLDKPQSF 43 (86)
T ss_dssp HHHHHHHHHTTCCHHHHHHHTTCCHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHhCcCHHH
Confidence 346778889999999999999886553
No 182
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=24.65 E-value=33 Score=23.03 Aligned_cols=33 Identities=3% Similarity=0.115 Sum_probs=28.9
Q ss_pred hhHHHHHhhcCCCchHHHHhhhCCccccccchh
Q 032497 2 QGAIQSFLSHGNIVKSAVLQRIRLVNPMLRPVV 34 (139)
Q Consensus 2 ~~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~d~ 34 (139)
++|++.+...+.++-.++++.++++..+.+..+
T Consensus 6 ~~il~~L~~~~~~s~~~la~~lg~s~~tv~~rl 38 (162)
T 3i4p_A 6 RKILRILQEDSTLAVADLAKKVGLSTTPCWRRI 38 (162)
T ss_dssp HHHHHHHTTCSCSCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHCcCHHHHHHHH
Confidence 468999999999999999999999888776555
No 183
>2ppx_A AGR_C_3184P, uncharacterized protein ATU1735; HTH-motif, XRE-family, structural genomics, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: a.35.1.3
Probab=24.52 E-value=28 Score=21.19 Aligned_cols=27 Identities=11% Similarity=0.052 Sum_probs=22.1
Q ss_pred HHHHHhhcCCCchHHHHhhhCCccccc
Q 032497 4 AIQSFLSHGNIVKSAVLQRIRLVNPML 30 (139)
Q Consensus 4 ~~~~~~~~~~i~~~~v~~~~~~~~~~~ 30 (139)
-|+..|...+++...+++.++++...+
T Consensus 34 ~lk~~R~~~glsq~elA~~lgvs~~~i 60 (99)
T 2ppx_A 34 RIKIIRRALKLTQEEFSARYHIPLGTL 60 (99)
T ss_dssp HHHHHHHHTTCCHHHHHHHHTCCHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHhCcCHHHH
Confidence 467888889999999999999866543
No 184
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=24.23 E-value=24 Score=19.82 Aligned_cols=28 Identities=14% Similarity=0.099 Sum_probs=22.4
Q ss_pred hHHHHHhhcCCCchHHHHhhhCCccccc
Q 032497 3 GAIQSFLSHGNIVKSAVLQRIRLVNPML 30 (139)
Q Consensus 3 ~~~~~~~~~~~i~~~~v~~~~~~~~~~~ 30 (139)
..|+..|...+++...+++.++++...+
T Consensus 8 ~~l~~~r~~~gls~~~lA~~~gis~~~i 35 (76)
T 1adr_A 8 ERIRARRKKLKIRQAALGKMVGVSNVAI 35 (76)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHCcCHHHH
Confidence 3577788888999999999999865543
No 185
>2l49_A C protein; P2 bacteriophage, P2 C, direct repeats, DNA-binding protein, binding protein; NMR {Enterobacteria phage P2} PDB: 2xcj_A
Probab=24.05 E-value=35 Score=20.39 Aligned_cols=28 Identities=7% Similarity=-0.010 Sum_probs=23.5
Q ss_pred hHHHHHhhcCCCchHHHHhhhCCccccc
Q 032497 3 GAIQSFLSHGNIVKSAVLQRIRLVNPML 30 (139)
Q Consensus 3 ~~~~~~~~~~~i~~~~v~~~~~~~~~~~ 30 (139)
..|+.+|...+++...+++.++++...+
T Consensus 7 ~~l~~~r~~~gltq~~lA~~~gis~~~i 34 (99)
T 2l49_A 7 EKIVLMRKSEYLSRQQLADLTGVPYGTL 34 (99)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHCCCHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHCcCHHHH
Confidence 5678889999999999999999876553
No 186
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=24.04 E-value=28 Score=22.42 Aligned_cols=30 Identities=13% Similarity=0.164 Sum_probs=24.6
Q ss_pred hhHHHHHhhcCCCchHHHHhhh--CCcccccc
Q 032497 2 QGAIQSFLSHGNIVKSAVLQRI--RLVNPMLR 31 (139)
Q Consensus 2 ~~~~~~~~~~~~i~~~~v~~~~--~~~~~~~~ 31 (139)
+.|++.++.+++++...+++.+ +++...++
T Consensus 16 ~~IL~~L~~~g~~s~~eLA~~l~~giS~~aVs 47 (111)
T 3b73_A 16 DRILEIIHEEGNGSPKELEDRDEIRISKSSVS 47 (111)
T ss_dssp HHHHHHHHHHSCBCHHHHHTSTTCCSCHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHhcCCCHHHHH
Confidence 3588999998999999999999 77666554
No 187
>2wus_R RODZ, putative uncharacterized protein; structural protein, cell WALL morphogenesis, bacterial cytos bacterial actin; 2.90A {Thermotoga maritima}
Probab=23.96 E-value=37 Score=21.59 Aligned_cols=28 Identities=7% Similarity=-0.094 Sum_probs=23.8
Q ss_pred hHHHHHhhcCCCchHHHHhhhCCccccc
Q 032497 3 GAIQSFLSHGNIVKSAVLQRIRLVNPML 30 (139)
Q Consensus 3 ~~~~~~~~~~~i~~~~v~~~~~~~~~~~ 30 (139)
..|+..|...+++..++|+.++++...+
T Consensus 10 ~~Lr~~R~~~glSq~eLA~~~gis~~~i 37 (112)
T 2wus_R 10 ETFRKKREERRITLLDASLFTNINPSKL 37 (112)
T ss_dssp HHHHHHHHTTTCCHHHHHHHSSCCHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHCcCHHHH
Confidence 3577889999999999999999877654
No 188
>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A
Probab=23.81 E-value=33 Score=21.08 Aligned_cols=28 Identities=7% Similarity=0.062 Sum_probs=22.9
Q ss_pred hHHHHHhhcCCCchHHHHhhhCCccccc
Q 032497 3 GAIQSFLSHGNIVKSAVLQRIRLVNPML 30 (139)
Q Consensus 3 ~~~~~~~~~~~i~~~~v~~~~~~~~~~~ 30 (139)
.-|+..|...+++...+|+.++++...+
T Consensus 31 ~~lr~~R~~~gltq~elA~~~gis~~~i 58 (99)
T 3g5g_A 31 FVIKKIRLEKGMTQEDLAYKSNLDRTYI 58 (99)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHTCCHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHCcCHHHH
Confidence 3577888999999999999998866543
No 189
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=23.78 E-value=31 Score=19.91 Aligned_cols=29 Identities=10% Similarity=0.084 Sum_probs=19.7
Q ss_pred ChhHHHHHhhcCCCchHHHHhhhCCcccccc
Q 032497 1 MQGAIQSFLSHGNIVKSAVLQRIRLVNPMLR 31 (139)
Q Consensus 1 ~~~~~~~~~~~~~i~~~~v~~~~~~~~~~~~ 31 (139)
|+.|-+. |...+ +...+++.++++...++
T Consensus 1 ~~~l~~~-r~~~g-sq~~lA~~lgvs~~~is 29 (79)
T 3bd1_A 1 MNAIDIA-INKLG-SVSALAASLGVRQSAIS 29 (79)
T ss_dssp CCHHHHH-HHHHS-SHHHHHHHHTCCHHHHH
T ss_pred ChHHHHH-HHHhC-CHHHHHHHHCCCHHHHH
Confidence 4444444 44445 99999999998766543
No 190
>1qtf_A Exfoliative toxin B; serine protease, superantigen, hydrolase; 2.40A {Staphylococcus aureus} SCOP: b.47.1.1 PDB: 1dt2_A
Probab=23.69 E-value=49 Score=23.63 Aligned_cols=23 Identities=9% Similarity=0.112 Sum_probs=17.7
Q ss_pred HcCCCEEEEEecCCCCceEEEEeHH
Q 032497 89 QHNVGALVVVKPGEQKSVAGIITER 113 (139)
Q Consensus 89 ~~~~~~lpVv~~d~~~~lvGivt~~ 113 (139)
-.|-+.=|++ +.+|+++||++..
T Consensus 182 ~~GdSGGPlv--~~~g~lvGI~s~g 204 (246)
T 1qtf_A 182 EVGNSGSGIF--NLKGELIGIHSGK 204 (246)
T ss_dssp CGGGTTCEEE--CTTCCEEEEEEEE
T ss_pred CCCCchhheE--CCCCEEEEEEecc
Confidence 3455667999 6689999999864
No 191
>1stz_A Heat-inducible transcription repressor HRCA homol; circe element, structural genomics, BSGC structure FUN NIH, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.51 d.110.2.3
Probab=23.57 E-value=34 Score=26.32 Aligned_cols=35 Identities=9% Similarity=0.116 Sum_probs=30.5
Q ss_pred hhHHH-----HHhhcCCCchHHHHhhh--CCccccccchhhh
Q 032497 2 QGAIQ-----SFLSHGNIVKSAVLQRI--RLVNPMLRPVVSS 36 (139)
Q Consensus 2 ~~~~~-----~~~~~~~i~~~~v~~~~--~~~~~~~~~d~~~ 36 (139)
+.|++ .+..++++...++++.+ +++.+++|.|+..
T Consensus 20 ~~IL~~i~~~yl~~~~pV~s~~La~~~~l~VS~aTIRrDL~~ 61 (338)
T 1stz_A 20 RKVLYCIVREYIENKKPVSSQRVLEVSNIEFSSATIRNDMKK 61 (338)
T ss_dssp HHHHHHHHHHHHHHCSCBCHHHHHHHSCCCSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCccHHHHHHHhCCCCCHHHHHHHHHH
Confidence 35677 68889999999999999 9999999999875
No 192
>3fan_A Non-structural protein; chymotrypsin-like, N-terminal beta-barrels, C-terminal alpha-beta extra domain; 1.90A {Porcine respiratory and reproductivesyndrome virus} PDB: 3fao_A
Probab=23.09 E-value=39 Score=24.60 Aligned_cols=25 Identities=16% Similarity=0.161 Sum_probs=19.3
Q ss_pred HcCCCEEEEEecCCCCceEEEEeHHHH
Q 032497 89 QHNVGALVVVKPGEQKSVAGIITERDY 115 (139)
Q Consensus 89 ~~~~~~lpVv~~d~~~~lvGivt~~dl 115 (139)
+.|-+.-||+ |.+|+++||-+..|=
T Consensus 123 ~pGdSGsPVv--n~dG~VIGVHt~s~~ 147 (213)
T 3fan_A 123 ACGDSGSPVI--TEAGELVGVHTGSNK 147 (213)
T ss_dssp CCCSTTCEEE--ETTSCEEEEEEC---
T ss_pred CCCCCCCccC--CCCCcEEEEEeccCC
Confidence 4677888999 789999999998774
No 193
>3vk0_A NHTF, transcriptional regulator; HTH motif, XRE transcription factor, DNA binding protein; 1.88A {Neisseria meningitidis}
Probab=22.98 E-value=31 Score=21.60 Aligned_cols=28 Identities=7% Similarity=0.067 Sum_probs=22.6
Q ss_pred hHHHHHhhcCCCchHHHHhhhCCccccc
Q 032497 3 GAIQSFLSHGNIVKSAVLQRIRLVNPML 30 (139)
Q Consensus 3 ~~~~~~~~~~~i~~~~v~~~~~~~~~~~ 30 (139)
.-|+..|...+++...+|+.++++...+
T Consensus 24 ~~lr~~R~~~gltq~elA~~~gis~~~i 51 (114)
T 3vk0_A 24 YNMRLFRVNKGWSQEELARQCGLDRTYV 51 (114)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHTCCHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHCcCHHHH
Confidence 3467788999999999999999865543
No 194
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=22.48 E-value=27 Score=20.17 Aligned_cols=27 Identities=11% Similarity=0.117 Sum_probs=21.7
Q ss_pred hHHHHHhhcCCCchHHHHhhhCCcccc
Q 032497 3 GAIQSFLSHGNIVKSAVLQRIRLVNPM 29 (139)
Q Consensus 3 ~~~~~~~~~~~i~~~~v~~~~~~~~~~ 29 (139)
..|+..|...+++...+|+.++++...
T Consensus 17 ~~l~~~R~~~gltq~elA~~~gis~~~ 43 (83)
T 3f6w_A 17 DLLLEARSAAGITQKELAARLGRPQSF 43 (83)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHCcCHHH
Confidence 356778888899999999999886554
No 195
>2as9_A Serine protease; trypsin-like fold, hydrolase; 1.70A {Staphylococcus aureus}
Probab=22.27 E-value=47 Score=23.09 Aligned_cols=21 Identities=14% Similarity=0.229 Sum_probs=17.2
Q ss_pred cCCCEEEEEecCCCCceEEEEeH
Q 032497 90 HNVGALVVVKPGEQKSVAGIITE 112 (139)
Q Consensus 90 ~~~~~lpVv~~d~~~~lvGivt~ 112 (139)
.|-+.=|++ +.+|+++||++.
T Consensus 155 ~GdSGGPlv--~~~g~lvGI~s~ 175 (210)
T 2as9_A 155 PGNSGSPVL--NSNNEVIGVVYG 175 (210)
T ss_dssp TTCTTCEEE--CTTSCEEEEECC
T ss_pred CCCccCcEE--CCCCeEEEEEec
Confidence 466778999 667999999985
No 196
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=21.90 E-value=44 Score=21.84 Aligned_cols=33 Identities=0% Similarity=0.041 Sum_probs=27.8
Q ss_pred hhHHHHHhhcCCCchHHHHhhhCCccccccchh
Q 032497 2 QGAIQSFLSHGNIVKSAVLQRIRLVNPMLRPVV 34 (139)
Q Consensus 2 ~~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~d~ 34 (139)
+.|++.+...+.++..++++.++++....+..+
T Consensus 12 ~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l 44 (151)
T 2dbb_A 12 MQLVKILSENSRLTYRELADILNTTRQRIARRI 44 (151)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHH
Confidence 368888999999999999999999887766544
No 197
>1agj_A Epidermolytic toxin A; hydrolase, serine protease; 1.70A {Staphylococcus aureus} SCOP: b.47.1.1 PDB: 1dua_A 1exf_A 1due_A
Probab=21.78 E-value=57 Score=23.06 Aligned_cols=21 Identities=10% Similarity=0.132 Sum_probs=16.7
Q ss_pred cCCCEEEEEecCCCCceEEEEeH
Q 032497 90 HNVGALVVVKPGEQKSVAGIITE 112 (139)
Q Consensus 90 ~~~~~lpVv~~d~~~~lvGivt~ 112 (139)
.|-+.=|++ +.+++++||+|.
T Consensus 192 ~GdSGGPl~--~~~g~lvGI~s~ 212 (242)
T 1agj_A 192 PGNSGSGIF--NSNGELVGIHSS 212 (242)
T ss_dssp GGGTTCEEE--CTTSEEEEEEEE
T ss_pred CCCCchHhc--ccCCEEEEEEec
Confidence 455667898 568999999986
No 198
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=21.62 E-value=46 Score=21.84 Aligned_cols=33 Identities=6% Similarity=0.244 Sum_probs=28.0
Q ss_pred hhHHHHHhhcCCCchHHHHhhhCCccccccchh
Q 032497 2 QGAIQSFLSHGNIVKSAVLQRIRLVNPMLRPVV 34 (139)
Q Consensus 2 ~~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~d~ 34 (139)
+.|++.+...+.++..++++.++++..+.+..+
T Consensus 11 ~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l 43 (152)
T 2cg4_A 11 RGILEALMGNARTAYAELAKQFGVSPETIHVRV 43 (152)
T ss_dssp HHHHHHHHHCTTSCHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHH
Confidence 468899999999999999999999888766554
No 199
>2l0k_A Stage III sporulation protein D; SPOIIID, solution structure, DNA binding, bacillus subti transcription factor, transcription; NMR {Bacillus subtilis}
Probab=21.48 E-value=39 Score=21.04 Aligned_cols=34 Identities=0% Similarity=-0.031 Sum_probs=27.0
Q ss_pred hhHHHHHhhcCCCchHHHHhhhCCccccccchhhh
Q 032497 2 QGAIQSFLSHGNIVKSAVLQRIRLVNPMLRPVVSS 36 (139)
Q Consensus 2 ~~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~d~~~ 36 (139)
+.|++.+..++ ++-..+++.++++..+++.++-.
T Consensus 10 ~~I~~~l~~~~-~ti~dlA~~~gVS~~TVsR~L~~ 43 (93)
T 2l0k_A 10 IKIGKYIVETK-KTVRVIAKEFGVSKSTVHKDLTE 43 (93)
T ss_dssp HHHHHHHHHHC-CCHHHHHHHHTSCHHHHHHHHTT
T ss_pred HHHHHHHHHcC-CCHHHHHHHHCCCHHHHHHHHcC
Confidence 35677777666 89999999999998888877754
No 200
>1nkw_F 50S ribosomal protein L9; ribosome, large subunit, X- RAY structure, peptidyl-transferase, peptide bond formation; 3.10A {Deinococcus radiodurans} SCOP: i.1.1.2 PDB: 1nwx_F* 1nwy_F* 1sm1_F* 1xbp_F* 1pnu_F 1pny_F 1vor_I 1vou_I 1vow_I 1voy_I 1vp0_I
Probab=21.48 E-value=63 Score=21.85 Aligned_cols=24 Identities=21% Similarity=0.333 Sum_probs=19.7
Q ss_pred cCCCCceEEEEeHHHHHHHHHHcCC
Q 032497 100 PGEQKSVAGIITERDYLRKIIVQGR 124 (139)
Q Consensus 100 ~d~~~~lvGivt~~dll~~~~~~~~ 124 (139)
.+ +|++.|-||..||..++...|.
T Consensus 82 ~g-~gklfGSVt~~dIa~al~~~g~ 105 (146)
T 1nkw_F 82 AG-EGKIYGAVTHQDVANSLDQLGF 105 (146)
T ss_pred cC-CCceeeccCHHHHHHHHHHcCC
Confidence 35 7999999999999988865553
No 201
>2w7s_A Serine protease SPLA; hydrolase, family S1; 1.80A {Staphylococcus aureus} PDB: 2w7u_A
Probab=21.13 E-value=56 Score=22.25 Aligned_cols=22 Identities=14% Similarity=0.209 Sum_probs=17.5
Q ss_pred cCCCEEEEEecCCCCceEEEEeHH
Q 032497 90 HNVGALVVVKPGEQKSVAGIITER 113 (139)
Q Consensus 90 ~~~~~lpVv~~d~~~~lvGivt~~ 113 (139)
.|-+.=|++ +.+++++||++..
T Consensus 151 ~GdSGGPl~--~~~g~lvGI~s~g 172 (200)
T 2w7s_A 151 PGNSGSPVL--NSKHELIGILYAG 172 (200)
T ss_dssp TTCTTCEEE--CTTSCEEEEEEEE
T ss_pred CCCccCeEE--CcCCEEEEEEecc
Confidence 466777999 5678999999864
No 202
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=20.93 E-value=48 Score=22.06 Aligned_cols=33 Identities=12% Similarity=0.163 Sum_probs=27.8
Q ss_pred hhHHHHHhhcCCCchHHHHhhhCCccccccchh
Q 032497 2 QGAIQSFLSHGNIVKSAVLQRIRLVNPMLRPVV 34 (139)
Q Consensus 2 ~~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~d~ 34 (139)
+.|++.+...+.++-.++++.++++..+.+..+
T Consensus 13 ~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l 45 (162)
T 2p5v_A 13 IKILQVLQENGRLTNVELSERVALSPSPCLRRL 45 (162)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHH
Confidence 368889999999999999999999887766544
No 203
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=20.56 E-value=50 Score=21.18 Aligned_cols=33 Identities=6% Similarity=0.128 Sum_probs=27.3
Q ss_pred hhHHHHHhhcCCCchHHHHhhhCCccccccchh
Q 032497 2 QGAIQSFLSHGNIVKSAVLQRIRLVNPMLRPVV 34 (139)
Q Consensus 2 ~~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~d~ 34 (139)
..|+..+..++.++-.++++.++++...++..+
T Consensus 7 ~~il~~L~~~~~~~~~ela~~lg~s~~tv~~~l 39 (141)
T 1i1g_A 7 KIILEILEKDARTPFTEIAKKLGISETAVRKRV 39 (141)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHH
Confidence 357888888899999999999999888766554
No 204
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=20.40 E-value=50 Score=21.52 Aligned_cols=33 Identities=15% Similarity=0.247 Sum_probs=27.7
Q ss_pred hhHHHHHhhcCCCchHHHHhhhCCccccccchh
Q 032497 2 QGAIQSFLSHGNIVKSAVLQRIRLVNPMLRPVV 34 (139)
Q Consensus 2 ~~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~d~ 34 (139)
+.|++.+...+.++..++++.++++..+.+..+
T Consensus 8 ~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l 40 (144)
T 2cfx_A 8 LNIIEELKKDSRLSMRELGRKIKLSPPSVTERV 40 (144)
T ss_dssp HHHHHHHHHCSCCCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHH
Confidence 368888988999999999999999887766544
No 205
>1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain swapping, electron transport; 2.69A {Corynebacterium ammoniagenes} SCOP: c.47.1.1
Probab=20.31 E-value=67 Score=17.55 Aligned_cols=45 Identities=7% Similarity=-0.163 Sum_probs=25.7
Q ss_pred cEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHH
Q 032497 71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRK 118 (139)
Q Consensus 71 ~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~ 118 (139)
+..++-+.. .+..+.+..++...+|++. .+|+.+|=.+..++.+.
T Consensus 28 ~~~~di~~~-~~~~~~~~~~~~~~vP~l~--~~g~~~~g~~~~~l~~~ 72 (75)
T 1r7h_A 28 YNTVDISLD-DEARDYVMALGYVQAPVVE--VDGEHWSGFRPERIKQL 72 (75)
T ss_dssp CEEEETTTC-HHHHHHHHHTTCBCCCEEE--ETTEEEESCCHHHHHHH
T ss_pred cEEEECCCC-HHHHHHHHHcCCCccCEEE--ECCeEEcCCCHHHHHHH
Confidence 444444432 2233445668888999874 35666654577666443
No 206
>2auw_A Hypothetical protein NE0471; alpha-beta structure, structural genomics, PSI, protein STRU initiative; 1.85A {Nitrosomonas europaea} SCOP: a.35.1.10 d.331.1.1
Probab=20.28 E-value=42 Score=23.45 Aligned_cols=27 Identities=7% Similarity=0.270 Sum_probs=23.7
Q ss_pred HHHHHhhcCCCchHHHHhhhCCccccc
Q 032497 4 AIQSFLSHGNIVKSAVLQRIRLVNPML 30 (139)
Q Consensus 4 ~~~~~~~~~~i~~~~v~~~~~~~~~~~ 30 (139)
-|+..|...++++..+|+++++++.++
T Consensus 94 ~lk~lR~~~glTQ~elA~~LGvsr~ti 120 (170)
T 2auw_A 94 MFGDWMHRNNLSLTTAAEALGISRRMV 120 (170)
T ss_dssp HHHHHHHHTTCCHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHhCCCHHHH
Confidence 478889999999999999999977754
No 207
>1l1j_A Heat shock protease HTRA; hydrolase, serine proteinase; 2.80A {Thermotoga maritima} SCOP: b.47.1.1
Probab=20.23 E-value=57 Score=23.47 Aligned_cols=22 Identities=18% Similarity=0.108 Sum_probs=17.7
Q ss_pred HcCCCEEEEEecCCCCceEEEEeH
Q 032497 89 QHNVGALVVVKPGEQKSVAGIITE 112 (139)
Q Consensus 89 ~~~~~~lpVv~~d~~~~lvGivt~ 112 (139)
..|-+.=|++ |.+|+++||++.
T Consensus 179 ~~G~SGGPLv--~~~G~vvGI~s~ 200 (239)
T 1l1j_A 179 NPGNSGGPLL--NIHGEVIGINTA 200 (239)
T ss_dssp CTTTTTSEEE--CSSSEEEEEECC
T ss_pred CCCCccHHhc--cCCCeEEEEEee
Confidence 4566778999 678999999985
No 208
>2qkp_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 1.75A {Streptococcus mutans}
Probab=20.22 E-value=59 Score=21.41 Aligned_cols=17 Identities=12% Similarity=0.204 Sum_probs=12.9
Q ss_pred CEEEEEecCCCCceEEEEe
Q 032497 93 GALVVVKPGEQKSVAGIIT 111 (139)
Q Consensus 93 ~~lpVv~~d~~~~lvGivt 111 (139)
+..||. |++|+++|+|.
T Consensus 109 ~~~Pi~--d~~G~~~G~ve 125 (151)
T 2qkp_A 109 TYAAVR--DQAGDFQGVLE 125 (151)
T ss_dssp EEEEEE--CTTCCEEEEEE
T ss_pred EEEEEE--CCCCCEEEEEE
Confidence 356888 67899999873
No 209
>3mlf_A Transcriptional regulator; structural genomics, helix-turn-helix XRE-family like protei transcription regulator, PSI-2; 2.60A {Staphylococcus aureus subsp}
Probab=20.10 E-value=39 Score=21.22 Aligned_cols=27 Identities=0% Similarity=0.130 Sum_probs=22.3
Q ss_pred HHHHHhhcCCCchHHHHhhhCCccccc
Q 032497 4 AIQSFLSHGNIVKSAVLQRIRLVNPML 30 (139)
Q Consensus 4 ~~~~~~~~~~i~~~~v~~~~~~~~~~~ 30 (139)
-|+.+|...+++...+|+.++++...+
T Consensus 27 ~Lk~~R~~~gltq~elA~~~gis~~~i 53 (111)
T 3mlf_A 27 TLKELRTDYGLTQKELGDLFKVSSRTI 53 (111)
T ss_dssp EHHHHHHHTTCCHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHCcCHHHH
Confidence 367888999999999999998866543
Done!