BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032498
(139 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1F7S|A Chain A, Crystal Structure Of Adf1 From Arabidopsis Thaliana
Length = 139
Score = 249 bits (637), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 118/139 (84%), Positives = 127/139 (91%)
Query: 1 MANAASGMAVDDDCKLKFLELKAKRTYRFIVFKIEEKQKQVVVEKLGEPSDSYENFTASL 60
MANAASGMAV DDCKL+FLELKAKRT+RFIV+KIEEKQKQVVVEK+G+P +YE F A L
Sbjct: 1 MANAASGMAVHDDCKLRFLELKAKRTHRFIVYKIEEKQKQVVVEKVGQPIQTYEEFAACL 60
Query: 61 PADECRYAVYDFDFVTDENCQKSKIIFIAWSPDTSKVRSKMIYASSKDRFKRELDGIQVE 120
PADECRYA+YDFDFVT ENCQKSKI FIAW PD +KVRSKMIYASSKDRFKRELDGIQVE
Sbjct: 61 PADECRYAIYDFDFVTAENCQKSKIFFIAWCPDIAKVRSKMIYASSKDRFKRELDGIQVE 120
Query: 121 LQATDPTEMGLDVMRSRSN 139
LQATDPTEM LDV RSR+N
Sbjct: 121 LQATDPTEMDLDVFRSRAN 139
>pdb|1AHQ|A Chain A, Recombinant Actophorin
Length = 137
Score = 137 bits (346), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 62/133 (46%), Positives = 93/133 (69%), Gaps = 1/133 (0%)
Query: 6 SGMAVDDDCKLKFLELKAKRTYRFIVFKIEEKQKQVVVEKLGEPSDSYENFTASLPADEC 65
SG+AV DDC KF ELK +R++ FK+ +VVVE +G P+ +YE+F + LP +C
Sbjct: 1 SGIAVSDDCVQKFNELKLGHQHRYVTFKMNASNTEVVVEHVGGPNATYEDFKSQLPERDC 60
Query: 66 RYAVYDFDFVTDENCQKSKIIFIAWSPDTSKVRSKMIYASSKDRFKRELDGIQVELQATD 125
RYA++D++F D Q++KI FI W+PD++ ++SKM+Y S+KD K++L GIQVE+QATD
Sbjct: 61 RYAIFDYEFQVD-GGQRNKITFILWAPDSAPIKSKMMYTSTKDSIKKKLVGIQVEVQATD 119
Query: 126 PTEMGLDVMRSRS 138
E+ D + R+
Sbjct: 120 AAEISEDAVSERA 132
>pdb|1CNU|A Chain A, Phosphorylated Actophorin From Acantamoeba Polyphaga
Length = 137
Score = 136 bits (342), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 61/132 (46%), Positives = 92/132 (69%), Gaps = 1/132 (0%)
Query: 7 GMAVDDDCKLKFLELKAKRTYRFIVFKIEEKQKQVVVEKLGEPSDSYENFTASLPADECR 66
G+AV DDC KF ELK +R++ FK+ +VVVE +G P+ +YE+F + LP +CR
Sbjct: 2 GIAVSDDCVQKFNELKLGHQHRYVTFKMNASNTEVVVEHVGGPNATYEDFKSQLPERDCR 61
Query: 67 YAVYDFDFVTDENCQKSKIIFIAWSPDTSKVRSKMIYASSKDRFKRELDGIQVELQATDP 126
YA++D++F D Q++KI FI W+PD++ ++SKM+Y S+KD K++L GIQVE+QATD
Sbjct: 62 YAIFDYEFQVD-GGQRNKITFILWAPDSAPIKSKMMYTSTKDSIKKKLVGIQVEVQATDA 120
Query: 127 TEMGLDVMRSRS 138
E+ D + R+
Sbjct: 121 AEISEDAVSERA 132
>pdb|1CFY|A Chain A, Yeast Cofilin, Monoclinic Crystal Form
pdb|1CFY|B Chain B, Yeast Cofilin, Monoclinic Crystal Form
pdb|1QPV|A Chain A, Yeast Cofilin
pdb|1COF|A Chain A, Yeast Cofilin, Orthorhombic Crystal Form
Length = 143
Score = 115 bits (287), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 57/134 (42%), Positives = 89/134 (66%), Gaps = 4/134 (2%)
Query: 6 SGMAVDDDCKLKFLELKAKRTYRFIVFKIEEKQKQVVV-EKLGEPSDSYENFTASLPADE 64
SG+AV D+ F +LK + Y+FI+F + + + ++VV E +PS Y+ F LP ++
Sbjct: 4 SGVAVADESLTAFNDLKLGKKYKFILFGLNDAKTEIVVKETSTDPS--YDAFLEKLPEND 61
Query: 65 CRYAVYDFDFVTDEN-CQKSKIIFIAWSPDTSKVRSKMIYASSKDRFKRELDGIQVELQA 123
C YA+YDF++ + N ++SKI+F WSPDT+ VRSKM+YASSKD +R L+G+ ++Q
Sbjct: 62 CLYAIYDFEYEINGNEGKRSKIVFFTWSPDTAPVRSKMVYASSKDALRRALNGVSTDVQG 121
Query: 124 TDPTEMGLDVMRSR 137
TD +E+ D + R
Sbjct: 122 TDFSEVSYDSVLER 135
>pdb|2I2Q|A Chain A, Fission Yeast Cofilin
Length = 137
Score = 113 bits (282), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 54/129 (41%), Positives = 85/129 (65%), Gaps = 2/129 (1%)
Query: 6 SGMAVDDDCKLKFLELKAKRTYRFIVFKIEEKQKQVVVEKLGEPSDSYENFTASLPADEC 65
SG+ V +C F ELK ++ R++VFK+ + + ++VVEK D ++ F LP +C
Sbjct: 4 SGVKVSPECLEAFQELKLGKSLRYVVFKMNDTKTEIVVEKKSTDKD-FDTFLGDLPEKDC 62
Query: 66 RYAVYDFDFVTDENCQKSKIIFIAWSPDTSKVRSKMIYASSKDRFKRELDGIQVELQATD 125
RYA+YDF+F E ++KIIFI+WSPD + ++SKM+Y+SSKD +R GI ++QATD
Sbjct: 63 RYAIYDFEFNLGEGV-RNKIIFISWSPDVAPIKSKMVYSSSKDTLRRAFTGIGTDIQATD 121
Query: 126 PTEMGLDVM 134
+E+ + +
Sbjct: 122 FSEVAYETV 130
>pdb|2L72|A Chain A, Solution Structure And Dynamics Of Adf From Toxoplasma
Gondii (Tgadf)
Length = 139
Score = 95.5 bits (236), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 55/127 (43%), Positives = 79/127 (62%), Gaps = 17/127 (13%)
Query: 5 ASGMAVDDDCKLKFLELKAKRTYRFIVFKIEEKQKQVVVEKLGEPSDSYENFTASLPADE 64
ASGM VD++C +F ELK ++T ++IVFKIE ++VVEK G+ + + F +LPA++
Sbjct: 23 ASGMGVDENCVARFNELKIRKTVKWIVFKIE--NTKIVVEKDGK--GNADEFRGALPAND 78
Query: 65 CRYAVYDFDFVTDENCQKSKIIFIAWSPDTSKVRSKMIYASSKDRFKRELDG-IQVELQA 123
CR+ VYD +KI F+ W PD + V+ +M YASSKD ++LDG V L+A
Sbjct: 79 CRFGVYDCG---------NKIQFVLWCPDNAPVKPRMTYASSKDALLKKLDGATAVALEA 129
Query: 124 TDPTEMG 130
EMG
Sbjct: 130 ---HEMG 133
>pdb|1AK6|A Chain A, Destrin, Nmr, Minimized Average Structure
pdb|1AK7|A Chain A, Destrin, Nmr, 20 Structures
Length = 174
Score = 85.5 bits (210), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 83/146 (56%), Gaps = 19/146 (13%)
Query: 2 ANAASGMAVDDDCKLKFLELKA---------KRTYRFIVFKIEEKQKQVVVEKLGEP--- 49
N+ASG+ V D+ F ++K K+ + ++F + +K ++VE+ E
Sbjct: 8 GNSASGVQVADEVCRIFYDMKVRKCSTPEEIKKRKKAVIFCLSADKKCIIVEEGKEILVG 67
Query: 50 ------SDSYENFTASLPADECRYAVYDFDFVTDENCQKSKIIFIAWSPDTSKVRSKMIY 103
+D +++F LP +CRYA+YD F T E+ +K +++F W+P+ + ++SKMIY
Sbjct: 68 DVGVTITDPFKHFVGMLPEKDCRYALYDASFETKES-RKEELMFFLWAPELAPLKSKMIY 126
Query: 104 ASSKDRFKRELDGIQVELQATDPTEM 129
ASSKD K++ GI+ E QA P ++
Sbjct: 127 ASSKDAIKKKFQGIKHECQANGPEDL 152
>pdb|1TVJ|A Chain A, Solution Structure Of Chick Cofilin
Length = 166
Score = 84.7 bits (208), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 91/153 (59%), Gaps = 24/153 (15%)
Query: 5 ASGMAVDDDCKLKFLELKAKRTY---------RFIVFKIEEKQKQVVVEK-----LGEPS 50
ASG+ V+D+ F ++K +++ + ++F + + +KQ++VE+ +G+
Sbjct: 2 ASGVTVNDEVIKVFNDMKVRKSSTPEEIKKRKKAVLFCLSDDKKQIIVEEAKQILVGDIG 61
Query: 51 DSYEN----FTASLPADECRYAVYDFDFVTDENCQKSKIIFIAWSPDTSKVRSKMIYASS 106
D+ E+ F LP ++CRYA+YD + T E+ +K ++FI W+P+++ ++SKMIYASS
Sbjct: 62 DTVEDPYTAFVKLLPLNDCRYALYDATYETKES-KKEDLVFIFWAPESAPLKSKMIYASS 120
Query: 107 KDRFKRELDGIQVELQATDPTEMGLDVMRSRSN 139
KD K++ GI+ E Q GLD ++ RS
Sbjct: 121 KDAIKKKFTGIKHEWQVN-----GLDDIKDRST 148
>pdb|1Q8G|A Chain A, Nmr Structure Of Human Cofilin
pdb|1Q8X|A Chain A, Nmr Structure Of Human Cofilin
pdb|3J0S|M Chain M, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|O Chain O, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|N Chain N, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|Q Chain Q, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|P Chain P, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|S Chain S, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|R Chain R, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|U Chain U, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|T Chain T, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|W Chain W, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|V Chain V, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|X Chain X, Remodeling Of Actin Filaments By Adf Cofilin Proteins
Length = 166
Score = 84.0 bits (206), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 49/138 (35%), Positives = 82/138 (59%), Gaps = 19/138 (13%)
Query: 5 ASGMAVDDDCKLKFLELKAKRTY---------RFIVFKIEEKQKQVVVEK--------LG 47
ASG+AV D F ++K +++ + ++F + E +K +++E+ +G
Sbjct: 2 ASGVAVSDGVIKVFNDMKVRKSSTPEEVKKRKKAVLFCLSEDKKNIILEEGKEILVGDVG 61
Query: 48 EP-SDSYENFTASLPADECRYAVYDFDFVTDENCQKSKIIFIAWSPDTSKVRSKMIYASS 106
+ D Y F LP +CRYA+YD + T E+ +K ++FI W+P+++ ++SKMIYASS
Sbjct: 62 QTVDDPYATFVKMLPDKDCRYALYDATYETKES-KKEDLVFIFWAPESAPLKSKMIYASS 120
Query: 107 KDRFKRELDGIQVELQAT 124
KD K++L GI+ ELQA
Sbjct: 121 KDAIKKKLTGIKHELQAN 138
>pdb|2XFA|A Chain A, Crystal Structure Of Plasmodium Berghei Actin
Depolymerization Factor 2
pdb|2XFA|B Chain B, Crystal Structure Of Plasmodium Berghei Actin
Depolymerization Factor 2
Length = 148
Score = 79.7 bits (195), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 72/130 (55%), Gaps = 7/130 (5%)
Query: 1 MANAASGMAVDDDCKLKFLELKAKRTYRFIVFKIEEKQKQVVVEKLGEPSD--SYENFTA 58
+ + SG+ V D+C +F LK K ++I++KIE +K +VV+ L + S +N
Sbjct: 3 LGSMVSGVNVSDECIYEFNRLKVKHLNKYIIYKIENLEK-IVVDVLEHDMELTSLDNIIM 61
Query: 59 ----SLPADECRYAVYDFDFVTDENCQKSKIIFIAWSPDTSKVRSKMIYASSKDRFKREL 114
+L ECRY + D T E + +I FI WSP SK + KM+YA+SK+ R++
Sbjct: 62 RIKNNLKNTECRYIIADMPIPTPEGVLRDRIYFIFWSPGLSKPKEKMLYAASKESLVRKI 121
Query: 115 DGIQVELQAT 124
+GI L+ T
Sbjct: 122 NGIFKSLEIT 131
>pdb|2LJ8|A Chain A, Solution Structure Of AdfCOFILIN FROM TRYPANOSOMA BRUCEI
Length = 144
Score = 76.3 bits (186), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 78/129 (60%), Gaps = 6/129 (4%)
Query: 4 AASGMAVDDDCKLKFLELKAKRTYRFIVFKIEEKQKQVVVEKLGEPSDSYENFTASLPAD 63
A SG++V D+C +L+ K++ R+++ I + QK + V+ +GE +++ F ++ +
Sbjct: 10 AMSGVSVADECVTALNDLRHKKS-RYVIMHIVD-QKSIAVKTIGERGANFDQFIEAIDKN 67
Query: 64 ECRYAVYDFDFVTDENCQKSKIIFIAWSPDTSKVRSKMIYASSKDRFKRELDGIQVELQA 123
YA +DF++ T++ + K+I I+W+PD+ R+KM+Y+SS+D G Q +QA
Sbjct: 68 VPCYAAFDFEYTTNDG-PRDKLILISWNPDSGAPRTKMLYSSSRDALVPLTQGFQ-GIQA 125
Query: 124 TDPTEMGLD 132
D + GLD
Sbjct: 126 NDAS--GLD 132
>pdb|1M4J|A Chain A, Crystal Structure Of The N-Terminal Adf-H Domain Of Mouse
Twinfilin Isoform-1
pdb|1M4J|B Chain B, Crystal Structure Of The N-Terminal Adf-H Domain Of Mouse
Twinfilin Isoform-1
Length = 142
Score = 64.7 bits (156), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 61/117 (52%), Gaps = 5/117 (4%)
Query: 6 SGMAVDDDCKLKFLELKAKRTYRFIVFKIEEKQKQVVVEKLGEPSDSYENFTAS--LPAD 63
+G+ +D K F R ++ + KI + +Q+VV PSDS+E S LP
Sbjct: 5 TGIQASEDVKEIFAR---ARNGKYRLLKISIENEQLVVGSCSPPSDSWEQDYDSFVLPLL 61
Query: 64 ECRYAVYDFDFVTDENCQKSKIIFIAWSPDTSKVRSKMIYASSKDRFKRELDGIQVE 120
E + Y + +N Q + IFIAWSPD S VR KM+YA+++ K+E G ++
Sbjct: 62 EDKQPCYVLFRLDSQNAQGYEWIFIAWSPDHSHVRQKMLYAATRATLKKEFGGGHIK 118
>pdb|2KVK|A Chain A, Solution Structure Of AdfCOFILIN (LDCOF) FROM LEISHMANIA
DONOVANI
Length = 144
Score = 63.9 bits (154), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 73/129 (56%), Gaps = 5/129 (3%)
Query: 4 AASGMAVDDDCKLKFLELKAKRTYRFIVFKIEEKQKQVVVEKLGEPSDSYENFTASLPAD 63
A SG+ +++ + +L+ K++ R+++ I K++ V ++GE S +Y + +
Sbjct: 2 AISGVTLEESVRGAIDDLRMKKS-RYVMMCIGADGKKIEVTEVGERSVNYTDLKEKFSTE 60
Query: 64 ECRYAVYDFDFVTDENCQKSKIIFIAWSPDTSKVRSKMIYASSKDRFKRELDGIQVELQA 123
+ Y +DF++ D ++ K+I I W PDT++ R KM+Y++S+D +G + +QA
Sbjct: 61 KPCYVAFDFEY-NDAGSKREKLILIQWIPDTARPREKMMYSASRDALSSVSEG-YLPIQA 118
Query: 124 TDPTEMGLD 132
D E GLD
Sbjct: 119 ND--ESGLD 125
>pdb|3Q2B|A Chain A, Crystal Structure Of An Actin Depolymerizing Factor
Length = 124
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 61/117 (52%), Gaps = 15/117 (12%)
Query: 6 SGMAVDDDCKLKFLELKAKRTYRFIVFKIEEKQKQVVVEKLGEPSDSYENFTASLPAD-- 63
SG+ V+D+C +F +K ++T +I+F I+ ++++ G S + S+ +
Sbjct: 5 SGIRVNDNCVTEFNNMKIRKTCGWIIFVIQ--NCEIIIHSKG-ASTTLTELVQSIDKNNE 61
Query: 64 -ECRYAVYDFDFVTDENCQKSKIIFIAWSPDTSKVRSKMIYASSKDRFKRELDGIQV 119
+C Y V+D SKI F ++ ++S R +M YASSK ++++G+ V
Sbjct: 62 IQCAYVVFD---------AVSKIHFFMYARESSNSRDRMTYASSKQAILKKIEGVNV 109
>pdb|2VAC|A Chain A, Structure Of N-Terminal Actin Depolymerizing Factor
Homology (Adf-H) Domain Of Human Twinfilin-2
Length = 134
Score = 49.7 bits (117), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 60/116 (51%), Gaps = 5/116 (4%)
Query: 7 GMAVDDDCKLKFLELKAKRTYRFIVFKIEEKQKQVVVEKLGEPSDSYENF--TASLPADE 64
G+ ++ K F + +A + R I IE++Q +V+ EP ++ A LP +
Sbjct: 3 GIHATEELKEFFAKARAG-SVRLIKVVIEDEQ--LVLGASQEPVGRWDQDYDRAVLPLLD 59
Query: 65 CRYAVYDFDFVTDENCQKSKIIFIAWSPDTSKVRSKMIYASSKDRFKRELDGIQVE 120
+ Y + +N Q + +F+AWSPD S VR KM+YA+++ K+E G ++
Sbjct: 60 AQQPCYLLYRLDSQNAQGFEWLFLAWSPDNSPVRLKMLYAATRATVKKEFGGGHIK 115
>pdb|2XF1|A Chain A, Crystal Structure Of Plasmodium Falciparum Actin
Depolymerization Factor 1
Length = 124
Score = 47.4 bits (111), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 61/118 (51%), Gaps = 15/118 (12%)
Query: 6 SGMAVDDDCKLKFLELKAKRT-YRFIVFKIEEKQKQVVVEKLGEPSDSYENFTASLPAD- 63
SG+ V+D+C +F +K ++T +I+F I+ ++++ G S + S+ +
Sbjct: 5 SGIRVNDNCVTEFNNMKIRKTCXGWIIFVIQNXC-EIIIHSKG-ASTTLTELVQSIDKNN 62
Query: 64 --ECRYAVYDFDFVTDENCQKSKIIFIAWSPDTSKVRSKMIYASSKDRFKRELDGIQV 119
+C Y V+D SKI F ++ ++S R +M YASSK ++++G+ V
Sbjct: 63 EIQCAYVVFD---------AVSKIHFFMYARESSNSRDRMTYASSKQAILKKIEGVNV 111
>pdb|3L50|A Chain A, The Crystal Structure Of Human Glia Maturation Factor,
Gamma (Gmfg)
pdb|3L50|B Chain B, The Crystal Structure Of Human Glia Maturation Factor,
Gamma (Gmfg)
Length = 136
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 57/110 (51%), Gaps = 10/110 (9%)
Query: 25 RTYRF--------IVFKIEEKQKQVVVEKLGEPSDSYENFTASLPADECRYAVYDFDFVT 76
R +RF I+ K+++ ++ VV+E+ + + S E LP + R+ VY + +V
Sbjct: 15 RKFRFRKETDNAAIIMKVDKDRQMVVLEEEFQ-NISPEELKMELPERQPRFVVYSYKYVH 73
Query: 77 DENCQKSKIIFIAWSPDTSKVRSKMIYASSKDRFKRELDGIQV-ELQATD 125
D+ + FI SP K +M+YA SK+R + + +V E++ TD
Sbjct: 74 DDGRVSYPLCFIFSSPVGCKPEQQMMYAGSKNRLVQTAELTKVFEIRTTD 123
>pdb|1WFS|A Chain A, Solution Structure Of Glia Maturation Factor-Gamma From
Mus Musculus
Length = 151
Score = 43.9 bits (102), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 56/110 (50%), Gaps = 10/110 (9%)
Query: 25 RTYRF--------IVFKIEEKQKQVVVEKLGEPSDSYENFTASLPADECRYAVYDFDFVT 76
R +RF I+ K+++ ++ VV+E + + S E LP + R+ VY + +V
Sbjct: 25 RKFRFRKETNNAAIIMKVDKDRQMVVLEDELQ-NISPEELKLELPERQPRFVVYSYKYVH 83
Query: 77 DENCQKSKIIFIAWSPDTSKVRSKMIYASSKDRFKRELDGIQV-ELQATD 125
D+ + FI SP K +M+YA SK+R + + +V E++ TD
Sbjct: 84 DDGRVSYPLCFIFSSPVGCKPEQQMMYAGSKNRLVQTAELTKVFEIRTTD 133
>pdb|1VKK|A Chain A, Crystal Structure Of Glia Maturation Factor-Gamma (Gmfg)
From Mus Musculus At 1.50 A Resolution
Length = 154
Score = 43.5 bits (101), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 56/110 (50%), Gaps = 10/110 (9%)
Query: 25 RTYRF--------IVFKIEEKQKQVVVEKLGEPSDSYENFTASLPADECRYAVYDFDFVT 76
R +RF I+ K+++ ++ VV+E + + S E LP + R+ VY + +V
Sbjct: 31 RKFRFRKETNNAAIIMKVDKDRQMVVLEDELQ-NISPEELKLELPERQPRFVVYSYKYVH 89
Query: 77 DENCQKSKIIFIAWSPDTSKVRSKMIYASSKDRFKRELDGIQV-ELQATD 125
D+ + FI SP K +M+YA SK+R + + +V E++ TD
Sbjct: 90 DDGRVSYPLCFIFSSPVGCKPEQQMMYAGSKNRLVQTAELTKVFEIRTTD 139
>pdb|1V6F|A Chain A, Solution Structure Of Glia Maturation Factor-Beta From Mus
Musculus
Length = 151
Score = 37.0 bits (84), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 9/94 (9%)
Query: 25 RTYRF--------IVFKIEEKQKQVVVEKLGEPSDSYENFTASLPADECRYAVYDFDFVT 76
R +RF I+ KI++ ++ VV+++ E S + LP + R+ VY + +
Sbjct: 25 RKFRFRKETHNAAIIMKIDKDERLVVLDEELE-GVSPDELKDELPERQPRFIVYSYKYQH 83
Query: 77 DENCQKSKIIFIAWSPDTSKVRSKMIYASSKDRF 110
D+ + FI SP K +M+YA SK++
Sbjct: 84 DDGRVSYPLCFIFSSPVGCKPEQQMMYAGSKNKL 117
>pdb|1KEP|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-Xylose Bound
pdb|1KEP|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-Xylose Bound
pdb|1KER|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-D-Glucose Bound
pdb|1KER|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-D-Glucose Bound
pdb|1KET|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Thymidine
Diphosphate Bound
pdb|1KET|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Thymidine
Diphosphate Bound
pdb|1OC2|A Chain A, The Structure Of Nadh In The Dtdp-D-Glucose Dehydratase
(Rmlb) Enzyme
pdb|1OC2|B Chain B, The Structure Of Nadh In The Dtdp-D-Glucose Dehydratase
(Rmlb) Enzyme
Length = 348
Score = 30.4 bits (67), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 45/90 (50%), Gaps = 16/90 (17%)
Query: 40 QVVVEKLGEPSDSYENFTASLPADECRYAVYDFDFVTDENCQKSKIIFIAWSP---DTSK 96
++++EK+G+P D+Y++ T D RYA+ D + DE + W+P D S+
Sbjct: 265 ELILEKMGQPKDAYDHVTDRAGHD-LRYAI-DASKLRDE---------LGWTPQFTDFSE 313
Query: 97 VRSKMI--YASSKDRFKRELDGIQVELQAT 124
+ I Y ++D +K E + ++ T
Sbjct: 314 GLEETIQWYTDNQDWWKAEKEAVEANYAKT 343
>pdb|1VPK|A Chain A, Crystal Structure Of Dna Polymerase Iii, Beta Subunit
(Tm0262) From Thermotoga Maritima At 2.00 A Resolution
Length = 378
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 3/38 (7%)
Query: 88 IAWSPDTS---KVRSKMIYASSKDRFKRELDGIQVELQ 122
I + DTS ++ K+I+A++KD F R L+G+ EL
Sbjct: 137 ITFEVDTSLLEEMVEKVIFAAAKDEFMRNLNGVFWELH 174
>pdb|4FHN|B Chain B, Nup37-Nup120 Full-Length Complex From Schizosaccharomyces
Pombe
pdb|4FHN|D Chain D, Nup37-Nup120 Full-Length Complex From Schizosaccharomyces
Pombe
Length = 1139
Score = 27.7 bits (60), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 9/62 (14%)
Query: 40 QVVVEKLGEPSDSYENFTASLPADE-CRYAVYDFDFVTDENCQKSKIIFIAWSPDTSKVR 98
VV+EK P SLP DE + + DF ++ E Q ++ IAW + + V
Sbjct: 327 NVVIEKGIIP--------PSLPDDEFIPWMLSDFQLISSEGSQSKFLLIIAWKSNLNTVI 378
Query: 99 SK 100
K
Sbjct: 379 QK 380
>pdb|2D8B|A Chain A, Solution Structure Of The Second Tandem Cofilin-Domain Of
Mouse Twinfilin
Length = 166
Score = 27.3 bits (59), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/90 (21%), Positives = 43/90 (47%), Gaps = 4/90 (4%)
Query: 19 LELKAKRTYRFIVFKIEEKQKQVVVEKLGEPSDSYENFTASLPADECRYAVYDFDFVTDE 78
LE +K+ ++ +I+ K + +++ + + +P D RY + + +
Sbjct: 37 LEKLSKKQLNYVQLEIDIKNETIILAN--TENTELRDLPKRIPKDSARYHFFLYKHSHEG 94
Query: 79 NCQKSKIIFIAWSPD-TSKVRSKMIYASSK 107
+ +S ++FI P T +R +M+Y+S K
Sbjct: 95 DYLES-VVFIYSMPGYTCSIRERMLYSSCK 123
>pdb|2W0I|A Chain A, Structure Of C-Terminal Actin Depolymerizing Factor
Homology (Adf-H) Domain Of Human Twinfilin-2
Length = 135
Score = 27.3 bits (59), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 38/86 (44%), Gaps = 8/86 (9%)
Query: 48 EPSDSYENFTASLPADECRYAVYDFDFVTDENCQKSKIIFIAWSPD-TSKVRSKMIYASS 106
EP+D + +P D RY + + T E ++FI P ++ +M+Y+S
Sbjct: 40 EPTD-VAQLPSRVPRDAARYHFFLYKH-THEGDPLESVVFIYSMPGYKCSIKERMLYSSC 97
Query: 107 KDRFKRELDGIQ--VELQATDPTEMG 130
K R LD ++ L+ E+G
Sbjct: 98 KSRL---LDSVEQDFHLEIAKKIEIG 120
>pdb|3DAW|B Chain B, Structure Of The Actin-Depolymerizing Factor Homology
Domain In Complex With Actin
Length = 164
Score = 27.3 bits (59), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/90 (21%), Positives = 43/90 (47%), Gaps = 4/90 (4%)
Query: 19 LELKAKRTYRFIVFKIEEKQKQVVVEKLGEPSDSYENFTASLPADECRYAVYDFDFVTDE 78
LE +K+ ++ +I+ K + +++ + + +P D RY + + +
Sbjct: 32 LEKLSKKQLNYVQLEIDIKNETIILA--NTENTELRDLPKRIPKDSARYHFFLYKHSHEG 89
Query: 79 NCQKSKIIFIAWSPD-TSKVRSKMIYASSK 107
+ +S ++FI P T +R +M+Y+S K
Sbjct: 90 DYLES-VVFIYSMPGYTCSIRERMLYSSCK 118
>pdb|2HD7|A Chain A, Solution Structure Of C-Teminal Domain Of Twinfilin-1
Length = 142
Score = 26.9 bits (58), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/90 (21%), Positives = 43/90 (47%), Gaps = 4/90 (4%)
Query: 19 LELKAKRTYRFIVFKIEEKQKQVVVEKLGEPSDSYENFTASLPADECRYAVYDFDFVTDE 78
LE +K+ ++ +I+ K + +++ + + +P D RY + + +
Sbjct: 16 LEKLSKKQLNYVQLEIDIKNETIILA--NTENTELRDLPKRIPKDSARYHFFLYKHSHEG 73
Query: 79 NCQKSKIIFIAWSPD-TSKVRSKMIYASSK 107
+ +S ++FI P T +R +M+Y+S K
Sbjct: 74 DYLES-VVFIYSMPGYTCSIRERMLYSSCK 102
>pdb|4FHM|B Chain B, Nup37-Nup120(Aa1-961) Complex From Schizosaccharomyces
Pombe
Length = 964
Score = 26.9 bits (58), Expect = 3.7, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 59 SLPADE-CRYAVYDFDFVTDENCQKSKIIFIAWSPDTSKVRSK 100
SLP DE + + DF ++ E Q ++ IAW + + V K
Sbjct: 338 SLPDDEFIPWMLSDFQLISSEGSQSKFLLIIAWKSNLNTVIQK 380
>pdb|4GQ2|M Chain M, S. Pombe Nup120-Nup37 Complex
Length = 950
Score = 26.9 bits (58), Expect = 3.9, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 59 SLPADE-CRYAVYDFDFVTDENCQKSKIIFIAWSPDTSKVRSK 100
SLP DE + + DF ++ E Q ++ IAW + + V K
Sbjct: 336 SLPDDEFIPWMLSDFQLISSEGSQSKFLLIIAWKSNLNTVIQK 378
>pdb|2X06|A Chain A, Sulfolactate Dehydrogenase From Methanocaldococcus
Jannaschii
pdb|2X06|B Chain B, Sulfolactate Dehydrogenase From Methanocaldococcus
Jannaschii
pdb|2X06|C Chain C, Sulfolactate Dehydrogenase From Methanocaldococcus
Jannaschii
pdb|2X06|D Chain D, Sulfolactate Dehydrogenase From Methanocaldococcus
Jannaschii
pdb|2X06|E Chain E, Sulfolactate Dehydrogenase From Methanocaldococcus
Jannaschii
pdb|2X06|F Chain F, Sulfolactate Dehydrogenase From Methanocaldococcus
Jannaschii
pdb|2X06|G Chain G, Sulfolactate Dehydrogenase From Methanocaldococcus
Jannaschii
pdb|2X06|H Chain H, Sulfolactate Dehydrogenase From Methanocaldococcus
Jannaschii
Length = 344
Score = 26.2 bits (56), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 32/58 (55%), Gaps = 11/58 (18%)
Query: 77 DENCQKSKIIFIAWSPDTSKVRSKMIYASSKDRFKRELDGIQVELQATDPTEMGLDVM 134
+E C K + FIA +P+ + K+ FKR++D + E++ ++P E G +++
Sbjct: 255 EERCTKGDL-FIAINPE---------FFXGKEEFKRKVDELLDEIKNSEPAE-GFEIL 301
>pdb|3B4N|A Chain A, Crystal Structure Analysis Of Pectate Lyase Peli From
Erwinia Chrysanthemi
pdb|3B4N|B Chain B, Crystal Structure Analysis Of Pectate Lyase Peli From
Erwinia Chrysanthemi
pdb|3B8Y|A Chain A, Crystal Structure Of Pectate Lyase Peli From Erwinia
Chrysanthemi In Complex With Tetragalacturonic Acid
pdb|3B8Y|B Chain B, Crystal Structure Of Pectate Lyase Peli From Erwinia
Chrysanthemi In Complex With Tetragalacturonic Acid
Length = 344
Score = 26.2 bits (56), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 81 QKSKIIFIAWSPDTSKVRSKMIY 103
QKS + ++ WS D SKV + +Y
Sbjct: 28 QKSDVNYLGWSTDESKVARQEVY 50
>pdb|1MAI|A Chain A, Structure Of The Pleckstrin Homology Domain From
Phospholipase C Delta In Complex With Inositol
Trisphosphate
Length = 131
Score = 25.8 bits (55), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
Query: 10 VDDDCKLKFLE-LKAKRTYRFIVFKIEEKQKQVVVEKLGEPSDSYENFTASLPADECRYA 68
+ +DCK + E K R+ +F IE+ Q+ ++G ++ E F +P D C
Sbjct: 35 LQEDCKTIWQESRKVMRSPESQLFSIEDIQE----VRMGHRTEGLEKFARDIPEDRCFSI 90
Query: 69 VY 70
V+
Sbjct: 91 VF 92
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.131 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,750,932
Number of Sequences: 62578
Number of extensions: 138306
Number of successful extensions: 433
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 389
Number of HSP's gapped (non-prelim): 36
length of query: 139
length of database: 14,973,337
effective HSP length: 89
effective length of query: 50
effective length of database: 9,403,895
effective search space: 470194750
effective search space used: 470194750
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 46 (22.3 bits)