Query 032498
Match_columns 139
No_of_seqs 120 out of 1035
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 14:52:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032498.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032498hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03216 actin depolymerizing 100.0 7.8E-47 1.7E-51 263.6 15.9 136 3-138 5-140 (141)
2 KOG1735 Actin depolymerizing f 100.0 1.6E-41 3.4E-46 234.0 11.0 135 4-138 1-140 (146)
3 cd00013 ADF Actin depolymerisa 100.0 2E-40 4.3E-45 228.7 15.4 132 6-138 1-132 (132)
4 PF00241 Cofilin_ADF: Cofilin/ 100.0 7.1E-39 1.5E-43 219.6 13.1 127 12-139 1-127 (127)
5 smart00102 ADF Actin depolymer 100.0 6.5E-38 1.4E-42 215.2 14.9 127 12-139 1-127 (127)
6 PTZ00152 cofilin/actin-depolym 100.0 9.1E-37 2E-41 207.6 8.3 115 4-130 1-119 (122)
7 KOG1736 Glia maturation factor 100.0 2.7E-27 5.9E-32 157.8 12.0 131 8-139 8-141 (143)
8 KOG1747 Protein tyrosine kinas 99.9 2.8E-27 6.1E-32 179.0 9.4 128 1-138 1-135 (342)
9 KOG1747 Protein tyrosine kinas 99.9 1.5E-24 3.3E-29 164.2 11.9 131 6-139 173-311 (342)
10 KOG3655 Drebrins and related a 99.8 4.8E-18 1E-22 135.4 12.0 129 6-139 5-134 (484)
11 PRK09798 antitoxin MazE; Provi 40.2 93 0.002 19.5 5.3 54 5-64 12-66 (82)
12 PRK11347 antitoxin ChpS; Provi 39.0 98 0.0021 19.4 5.2 55 4-65 10-64 (83)
13 KOG4037 Photoreceptor synaptic 33.8 1.4E+02 0.0029 22.0 5.0 48 27-74 86-137 (240)
14 PF02680 DUF211: Uncharacteriz 32.6 56 0.0012 21.2 2.7 51 14-65 22-72 (95)
15 PF06110 DUF953: Eukaryotic pr 31.6 23 0.00049 23.9 0.8 35 52-95 4-42 (119)
16 KOG2130 Phosphatidylserine-spe 31.2 31 0.00066 27.6 1.5 37 6-43 192-228 (407)
17 COG1888 Uncharacterized protei 31.2 1.4E+02 0.0031 19.3 4.3 52 13-65 23-74 (97)
18 KOG0444 Cytoskeletal regulator 29.8 1.2E+02 0.0025 27.3 4.8 49 64-115 527-575 (1255)
19 PF05941 Chordopox_A20R: Chord 29.3 2.3E+02 0.005 22.7 6.1 71 1-73 94-170 (334)
20 PF11341 DUF3143: Protein of u 29.3 57 0.0012 19.5 2.1 29 86-114 31-60 (63)
21 PF11663 Toxin_YhaV: Toxin wit 27.0 86 0.0019 21.9 3.0 26 66-98 80-106 (140)
22 KOG2313 Stress-induced protein 26.8 90 0.0019 20.4 2.9 31 94-128 66-99 (100)
23 COG3905 Predicted transcriptio 26.1 62 0.0013 20.5 2.0 20 5-24 4-23 (83)
24 PF03400 DDE_Tnp_IS1: IS1 tran 25.9 1.4E+02 0.0031 20.4 4.0 43 25-67 18-61 (131)
25 PF12663 DUF3788: Protein of u 25.3 94 0.002 21.2 3.0 29 9-37 91-119 (133)
26 COG0081 RplA Ribosomal protein 22.9 2.2E+02 0.0048 21.5 4.8 30 4-37 138-169 (228)
27 PF14234 DUF4336: Domain of un 22.9 1.1E+02 0.0024 24.0 3.2 27 6-32 36-63 (285)
28 PRK04968 SecY interacting prot 22.7 1.7E+02 0.0037 21.3 4.0 32 31-62 141-177 (181)
29 COG0432 Uncharacterized conser 21.0 2.3E+02 0.005 19.7 4.2 56 8-66 19-76 (137)
30 PF14157 YmzC: YmzC-like prote 20.0 1.3E+02 0.0028 18.0 2.4 17 30-46 42-58 (63)
No 1
>PLN03216 actin depolymerizing factor; Provisional
Probab=100.00 E-value=7.8e-47 Score=263.64 Aligned_cols=136 Identities=60% Similarity=1.087 Sum_probs=128.7
Q ss_pred CCCCCCccCHHHHHHHHHHhhCCCceEEEEEEeCCceEEEEeecCCCCCCHHHHHhcCCCCCceeEEEEeeeecCcCCcc
Q 032498 3 NAASGMAVDDDCKLKFLELKAKRTYRFIVFKIEEKQKQVVVEKLGEPSDSYENFTASLPADECRYAVYDFDFVTDENCQK 82 (139)
Q Consensus 3 ~~~SGi~i~~e~~~a~~~l~~~~~~~~vi~~i~~~~~~i~v~~~~~~~~~~~~~~~~L~~~~pry~~y~~~~~~~~~~~~ 82 (139)
|++|||+++++|..+|++|+.++.+|||+|+|+.++++|+|++++..+.+|++|.+.||+++|||++|||++++.+|+.+
T Consensus 5 m~~SGi~v~~~c~~~f~~lk~~k~~r~iifkI~~~~~~ivv~~~~~~~~~~~d~~~~L~~~~~rY~vyd~~~~~~~g~~~ 84 (141)
T PLN03216 5 MATTGMWVTDECKNSFMEMKWKKVHRYIVFKIDEKSRKVTVDKVGGPGESYDDLAASLPTDDCRYAVFDFDFVTVDNCRK 84 (141)
T ss_pred ecCCCCeeCHHHHHHHHHHHhCCCceEEEEEEcCCCCEEEEEecCCCCCCHHHHHHhCCCCCCeEEEEEeEeccCCCCcc
Confidence 35899999999999999999887789999999998889999988665678999999999999999999999988889999
Q ss_pred ceEEEEEEcCCCCCcchhhhhhhhHHHHHhhcCCeeEEEEeCCCCCCCHHHHhhhc
Q 032498 83 SKIIFIAWSPDTSKVRSKMIYASSKDRFKRELDGIQVELQATDPTEMGLDVMRSRS 138 (139)
Q Consensus 83 ~k~vfI~w~P~~a~vk~kMlYassk~~l~~~l~g~~~~i~~~~~~dl~~~~i~~~~ 138 (139)
++|+||+|||++||+|.||+|||+|.+|++.|+|+++++||+|.+||+++.+.+++
T Consensus 85 ~klvFI~w~Pd~a~vk~KMlYAssK~~lk~~l~gi~~~iqatd~~el~~~~~~~~~ 140 (141)
T PLN03216 85 SKIFFIAWSPEASRIRAKMLYATSKDGLRRVLDGVHYELQATDPTEMGFDVIRDRA 140 (141)
T ss_pred cCEEEEEECCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEECChHhcCHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999886
No 2
>KOG1735 consensus Actin depolymerizing factor [Cytoskeleton]
Probab=100.00 E-value=1.6e-41 Score=234.02 Aligned_cols=135 Identities=64% Similarity=1.039 Sum_probs=127.7
Q ss_pred CCCCCccCHHHHHHHHHHhhCCCceEEEEEEeCCceEEEEeecCCCCCCHHHHHhcCC---CCCceeEEEEeeeecCc--
Q 032498 4 AASGMAVDDDCKLKFLELKAKRTYRFIVFKIEEKQKQVVVEKLGEPSDSYENFTASLP---ADECRYAVYDFDFVTDE-- 78 (139)
Q Consensus 4 ~~SGi~i~~e~~~a~~~l~~~~~~~~vi~~i~~~~~~i~v~~~~~~~~~~~~~~~~L~---~~~pry~~y~~~~~~~~-- 78 (139)
++||+.++++|+.+|++|+.++.+|+|+|+|+.+..+|++++.|..+.+|++|...|| .++|||++||+++.+..
T Consensus 1 ~aSGv~Vsde~~~~F~elk~kk~~r~ivF~i~~~~~~i~ve~~g~~~~s~~~f~~~l~~~~~~dCrYA~yDf~f~t~~~g 80 (146)
T KOG1735|consen 1 MASGVAVSDECKKVFNELKVKKRKRYVVFKISEDKKQIIVEKGGSPGASYDDFVASLPKMPEKDCRYALYDFEFETKESG 80 (146)
T ss_pred CCcceEecHHHHHHHHHHHhhcceeEEEEEeccccccccccccCCCCCchhhhHHHhccCCccccceEEecceEEeeccc
Confidence 4799999999999999999988899999999998899999999988999999999999 99999999999998743
Q ss_pred CCccceEEEEEEcCCCCCcchhhhhhhhHHHHHhhcCCeeEEEEeCCCCCCCHHHHhhhc
Q 032498 79 NCQKSKIIFIAWSPDTSKVRSKMIYASSKDRFKRELDGIQVELQATDPTEMGLDVMRSRS 138 (139)
Q Consensus 79 ~~~~~k~vfI~w~P~~a~vk~kMlYassk~~l~~~l~g~~~~i~~~~~~dl~~~~i~~~~ 138 (139)
+..++|++||.|||++||+|+||+|||+|++|++.|.|+++++||||++|++++.++++|
T Consensus 81 ~~~~~Ki~f~~wsPd~a~vKsKMiYaSSkDalkr~L~Gi~~elQatd~~E~~~~~~~ekl 140 (146)
T KOG1735|consen 81 NCKKSKIFFIAWSPDTAPVKSKMIYASSKDALKRELTGIQHELQATDPSEMSLDSLAEKL 140 (146)
T ss_pred cceeeeEEEEEECCCccchhhheeehhhHHHHhhhccCceeeeecCChHHhhHHHHHHHh
Confidence 347899999999999999999999999999999999999999999999999999999887
No 3
>cd00013 ADF Actin depolymerisation factor/cofilin -like domains; present in a family of essential eukaryotic actin regulatory proteins; these proteins enhance the turnover rate of actin and interact with actin monomers as well as actin filaments.
Probab=100.00 E-value=2e-40 Score=228.66 Aligned_cols=132 Identities=54% Similarity=0.948 Sum_probs=123.6
Q ss_pred CCCccCHHHHHHHHHHhhCCCceEEEEEEeCCceEEEEeecCCCCCCHHHHHhcCCCCCceeEEEEeeeecCcCCccceE
Q 032498 6 SGMAVDDDCKLKFLELKAKRTYRFIVFKIEEKQKQVVVEKLGEPSDSYENFTASLPADECRYAVYDFDFVTDENCQKSKI 85 (139)
Q Consensus 6 SGi~i~~e~~~a~~~l~~~~~~~~vi~~i~~~~~~i~v~~~~~~~~~~~~~~~~L~~~~pry~~y~~~~~~~~~~~~~k~ 85 (139)
|||+++++|.++|++++.+++++||+|+|+.++++|++++++....++++|.+.||+++|||++||+.+.+. |+.++++
T Consensus 1 sgi~i~~e~~~a~~~~~~~~~~~~vi~~i~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~y~~~~~~~~~~-~~~~~k~ 79 (132)
T cd00013 1 SGIKVSDECKEAFEELKSGKKTRWIIFKIDDDKKEIVVEKTGEGGESFDEFVEELPEDECRYALYDYDFTTE-GSKKSKI 79 (132)
T ss_pred CCceECHHHHHHHHHHHhCCceeEEEEEEcCCCCEEEEEecCCCCCCHHHHHHhCCcCCceEEEEEecccCC-CccccCE
Confidence 799999999999999998767999999999988899999987543589999999999999999999998765 7889999
Q ss_pred EEEEEcCCCCCcchhhhhhhhHHHHHhhcCCeeEEEEeCCCCCCCHHHHhhhc
Q 032498 86 IFIAWSPDTSKVRSKMIYASSKDRFKRELDGIQVELQATDPTEMGLDVMRSRS 138 (139)
Q Consensus 86 vfI~w~P~~a~vk~kMlYassk~~l~~~l~g~~~~i~~~~~~dl~~~~i~~~~ 138 (139)
+||+|||++||+|+||+|||+|.+|++.++|+++++++++.+||+++.+.++|
T Consensus 80 vfI~w~P~~a~~k~km~yas~k~~l~~~l~~~~~~i~a~~~~dl~~~~i~~kl 132 (132)
T cd00013 80 VFIYWSPETAPVKSKMLYASSKAALKRELVGIQVEVQATDPDELDEEALLEKL 132 (132)
T ss_pred EEEEECCCCCChhhhhhhHHHHHHHHHhcCCceEEEEECChhhcCHHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999875
No 4
>PF00241 Cofilin_ADF: Cofilin/tropomyosin-type actin-binding protein; InterPro: IPR002108 The actin-depolymerising factor homology (ADF-H) domain is an ~150-amino acid motif that is present in three phylogenetically distinct classes of eukaryotic actin-binding proteins [, , ]: ADF/cofilins, which include ADF, cofilin, destrin, actophorin, coactosin, depactin and glia maturation factors (GMFs) beta and gamma. ADF/cofilins are small actin-binding proteins composed of a single ADF-H domain. They bind both actin-monomers and filaments and promote rapid filament turnover in cells by depolymerising/fragmenting actin filaments. ADF/cofilins bind ADP-actin with higher affinity than ATP-actin and inhibit the spontaneous nucleotide exchange on actin monomers Twinfilins, which are actin monomer-binding proteins that are composed of two ADF-H domains Abp1/Drebrins, which are relatively large proteins composed of an N-terminal ADF-H domain followed by a variable region and a C-terminal SH3 domain. Abp1/Drebrins interact only with actin filaments and do not promote filament depolymerisation or fragmentation Although these proteins are biochemically distinct and play different roles in actin dynamics, they all appear to use the ADF-H domain for their interactions with actin. The ADF-H domain consists of a six-stranded mixed beta-sheet in which the four central strands (beta2-beta5) are anti-parallel and the two edge strands (beta1 and beta6) run parallel with the neighbouring strands. The sheet is surrounded by two alpha-helices on each side [, , ].; GO: 0003779 actin binding, 0005622 intracellular; PDB: 1AK6_A 1AK7_A 1V6F_A 2L72_A 1CFY_A 1QPV_A 1COF_A 1TVJ_A 1X67_A 3L50_A ....
Probab=100.00 E-value=7.1e-39 Score=219.65 Aligned_cols=127 Identities=40% Similarity=0.829 Sum_probs=118.5
Q ss_pred HHHHHHHHHHhhCCCceEEEEEEeCCceEEEEeecCCCCCCHHHHHhcCCCCCceeEEEEeeeecCcCCccceEEEEEEc
Q 032498 12 DDCKLKFLELKAKRTYRFIVFKIEEKQKQVVVEKLGEPSDSYENFTASLPADECRYAVYDFDFVTDENCQKSKIIFIAWS 91 (139)
Q Consensus 12 ~e~~~a~~~l~~~~~~~~vi~~i~~~~~~i~v~~~~~~~~~~~~~~~~L~~~~pry~~y~~~~~~~~~~~~~k~vfI~w~ 91 (139)
|||+++|++++.+++++|++|+|++++++|+++++|....++++|.+.|++++|||++||+.+++. |+.+++++||+||
T Consensus 1 ~e~~~~~~~~~~~~~~~~i~~~i~~~~~~i~v~~~g~~~~~~~el~~~l~~~~p~y~~~~~~~~~~-~~~~~k~vfI~w~ 79 (127)
T PF00241_consen 1 DECKAAFQELKSKKSTRWIIFKIDDEKEEIVVEKSGSEGGSFDELLSHLPDDEPRYILYRFEYTHK-GSRRSKLVFIYWC 79 (127)
T ss_dssp HHHHHHHHHHHTTTSCSEEEEEEETTSTEEEEEEEEEESSHHHHHHHCSCTTSEEEEEEEEEEEET-TSEEEEEEEEEEE
T ss_pred CHHHHHHHHHHcCCCceEEEEEEeCCCcEEEEEeccCCCCCHHHHHHhcccCCcEEEEEEeeeccc-CCCCceEEEEEEe
Confidence 689999999999877999999999998899999987667899999999999999999999999865 7789999999999
Q ss_pred CCCCCcchhhhhhhhHHHHHhhcCCeeEEEEeCCCCCCCHHHHhhhcC
Q 032498 92 PDTSKVRSKMIYASSKDRFKRELDGIQVELQATDPTEMGLDVMRSRSN 139 (139)
Q Consensus 92 P~~a~vk~kMlYassk~~l~~~l~g~~~~i~~~~~~dl~~~~i~~~~~ 139 (139)
|++||+|+||+|||++.+|++.++|++.+++++|++||+++.|.+||.
T Consensus 80 P~~~~vk~km~yas~k~~l~~~l~~~~~~~~~~d~~dl~~~~i~~kl~ 127 (127)
T PF00241_consen 80 PDNAPVKEKMLYASSKASLKKKLGGIHIEIQASDPDDLSEEEILEKLK 127 (127)
T ss_dssp STTS-HHHHHHHHHHHHHHHHHCTTEEEEEEESSGGGGSHHHHHHHH-
T ss_pred cCCccHHHhhhhHHhHHHHHHHhCCceEEEEECChHHCCHHHHHHhhC
Confidence 999999999999999999999999999999999999999999999873
No 5
>smart00102 ADF Actin depolymerisation factor/cofilin -like domains. Severs actin filaments and binds to actin monomers.
Probab=100.00 E-value=6.5e-38 Score=215.22 Aligned_cols=127 Identities=51% Similarity=0.922 Sum_probs=118.2
Q ss_pred HHHHHHHHHHhhCCCceEEEEEEeCCceEEEEeecCCCCCCHHHHHhcCCCCCceeEEEEeeeecCcCCccceEEEEEEc
Q 032498 12 DDCKLKFLELKAKRTYRFIVFKIEEKQKQVVVEKLGEPSDSYENFTASLPADECRYAVYDFDFVTDENCQKSKIIFIAWS 91 (139)
Q Consensus 12 ~e~~~a~~~l~~~~~~~~vi~~i~~~~~~i~v~~~~~~~~~~~~~~~~L~~~~pry~~y~~~~~~~~~~~~~k~vfI~w~ 91 (139)
++|.++|++|+.+++.+|++|+|+.++++|+++.+|.++++|++|++.||+++|||++||+.++++ ++.+++++||+||
T Consensus 1 ~~~~~~~~~~~~~~~~~~vi~~i~~~~~~i~v~~~~~~~~~~~el~~~l~~~~~ry~~~~~~~~~~-~~~~~k~vfI~w~ 79 (127)
T smart00102 1 EDCKEAFNELKKKRKHSAIIFKIDKDNEEIVVEEVGSTEDSYDEFVEELPEDECRYALYDYKFTTE-ESKKSKIVFIFWS 79 (127)
T ss_pred ChHHHHHHHHHcCCCceEEEEEEecCCCEEEEEecCCCCCCHHHHHHhCCccCceEEEEEeecccC-CCccccEEEEEEC
Confidence 478999999998777899999999988999999987666789999999999999999999998765 5678999999999
Q ss_pred CCCCCcchhhhhhhhHHHHHhhcCCeeEEEEeCCCCCCCHHHHhhhcC
Q 032498 92 PDTSKVRSKMIYASSKDRFKRELDGIQVELQATDPTEMGLDVMRSRSN 139 (139)
Q Consensus 92 P~~a~vk~kMlYassk~~l~~~l~g~~~~i~~~~~~dl~~~~i~~~~~ 139 (139)
|++||+|.||+|||++.+|++.++|++..+++++.+||+++.|.++|+
T Consensus 80 P~~a~~~~km~yas~k~~l~~~l~~~~~~i~~~~~~el~~~~i~~kl~ 127 (127)
T smart00102 80 PDGAPVKSKMLYASSKDTLKKELGGIQVEVQATDEDDLDEEALKEKLK 127 (127)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCceEEEEECChhhcCHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999875
No 6
>PTZ00152 cofilin/actin-depolymerizing factor 1-like protein; Provisional
Probab=100.00 E-value=9.1e-37 Score=207.55 Aligned_cols=115 Identities=27% Similarity=0.607 Sum_probs=102.1
Q ss_pred CCCCCccCHHHHHHHHHHhhCCCceEEEEEEeCCceEEEEeecCCCCCCHHHHHhcCCCCC---ceeEEEEeeeecCcCC
Q 032498 4 AASGMAVDDDCKLKFLELKAKRTYRFIVFKIEEKQKQVVVEKLGEPSDSYENFTASLPADE---CRYAVYDFDFVTDENC 80 (139)
Q Consensus 4 ~~SGi~i~~e~~~a~~~l~~~~~~~~vi~~i~~~~~~i~v~~~~~~~~~~~~~~~~L~~~~---pry~~y~~~~~~~~~~ 80 (139)
|+|||+++++|..+|++|+.++.+|||+|+|++ ++|+|++.++ ..+|++|++.||+++ |||++|++.
T Consensus 1 m~SGi~v~de~~~~f~~lk~~k~~r~iifkI~~--~~Ivv~~~~~-~~~~~e~~~~L~~~~~~~crY~vyd~~------- 70 (122)
T PTZ00152 1 MISGIRVNDNCVTEFNNMKIRKTCRWIIFVIEN--CEIIIHSKGA-TTTLTELVGSIDKNDKIQCAYVVFDAV------- 70 (122)
T ss_pred CCCCcCcCHHHHHHHHHHhcCCcceEEEEEEcC--cEEEEEecCC-CCCHHHHHHhccccCCCCceEEEEccC-------
Confidence 468999999999999999988789999999975 6899998876 568999999999987 999999873
Q ss_pred ccceEEEEEEcCCCCCcchhhhhhhhHHHHHhhcCCee-EEEEeCCCCCCC
Q 032498 81 QKSKIIFIAWSPDTSKVRSKMIYASSKDRFKRELDGIQ-VELQATDPTEMG 130 (139)
Q Consensus 81 ~~~k~vfI~w~P~~a~vk~kMlYassk~~l~~~l~g~~-~~i~~~~~~dl~ 130 (139)
++++||+|||++|++|.||+|||||.+|++.+.|++ ...++++.+||.
T Consensus 71 --~klvFI~w~Pd~a~ik~KMlYASsK~~l~~~l~Gi~~~~~~~~~~~~~~ 119 (122)
T PTZ00152 71 --NKIHFFMYARESSNSRDRMTYASSKQALLKKIEGVNVLTSVIESAQDVA 119 (122)
T ss_pred --CCEEEEEECCCCCChHHhhhhHhHHHHHHHHhcchhHHHHHHHHhhhhh
Confidence 379999999999999999999999999999999975 356777777763
No 7
>KOG1736 consensus Glia maturation factor beta [Extracellular structures]
Probab=99.95 E-value=2.7e-27 Score=157.79 Aligned_cols=131 Identities=18% Similarity=0.380 Sum_probs=118.5
Q ss_pred CccCHHHHHHHHHHhhC-C--CceEEEEEEeCCceEEEEeecCCCCCCHHHHHhcCCCCCceeEEEEeeeecCcCCccce
Q 032498 8 MAVDDDCKLKFLELKAK-R--TYRFIVFKIEEKQKQVVVEKLGEPSDSYENFTASLPADECRYAVYDFDFVTDENCQKSK 84 (139)
Q Consensus 8 i~i~~e~~~a~~~l~~~-~--~~~~vi~~i~~~~~~i~v~~~~~~~~~~~~~~~~L~~~~pry~~y~~~~~~~~~~~~~k 84 (139)
.+|+++..+.+++++-. + ....+++||+++..+|+++..--...+.+|+++.||+..|||++|.|.+++++|+..++
T Consensus 8 ~~i~~et~~ki~kFR~r~k~t~~~A~imKidK~~~eiV~d~Eeld~is~eEladeLpe~~PRFvl~sYpt~t~DGr~stP 87 (143)
T KOG1736|consen 8 CKIGTETREKIRKFRFRTKETSNAAIIMKIDKDSYEIVLDEEELDEISPEELADELPERQPRFVLYSYPTTTDDGRVSTP 87 (143)
T ss_pred EEeCHHHHHHHHHhhhhhccccceeEEEEecCCceEeecCHHHhccCChHHHHhhccccCCcEEEEECcccccCCccccc
Confidence 58999999999998754 2 47789999999988999984322367888999999999999999999999999999999
Q ss_pred EEEEEEcCCCCCcchhhhhhhhHHHHHhhcCCeeEEEEeCCCCCCCHHHHhhhcC
Q 032498 85 IIFIAWSPDTSKVRSKMIYASSKDRFKRELDGIQVELQATDPTEMGLDVMRSRSN 139 (139)
Q Consensus 85 ~vfI~w~P~~a~vk~kMlYassk~~l~~~l~g~~~~i~~~~~~dl~~~~i~~~~~ 139 (139)
++||||.|-+++..++|+||++|+-+.+.. ++++.+++++-+|++.+++.++|+
T Consensus 88 L~~Iyw~P~~~~~e~~MmYAgak~~~~~~~-~~~KvfEir~tdD~t~e~l~E~L~ 141 (143)
T KOG1736|consen 88 LCFIYWSPVGCKPEQQMMYAGAKNMLVQTA-ELTKVFEIRSTDDLTEEWLREKLE 141 (143)
T ss_pred EEEEEecCccCCHHHHHHHHHHHHHHHHHh-hheEEEEecccccccHHHHHHHhh
Confidence 999999999999999999999999999888 789999999999999999999875
No 8
>KOG1747 consensus Protein tyrosine kinase 9/actin monomer-binding protein [Extracellular structures]
Probab=99.94 E-value=2.8e-27 Score=178.96 Aligned_cols=128 Identities=32% Similarity=0.490 Sum_probs=107.6
Q ss_pred CCCCCCCCccCHHHHHHHHHHhhCCCceEEEEEEeCCceEEEEeecCCC----CCCHHHHHhcC-CCCCceeEEEEeeee
Q 032498 1 MANAASGMAVDDDCKLKFLELKAKRTYRFIVFKIEEKQKQVVVEKLGEP----SDSYENFTASL-PADECRYAVYDFDFV 75 (139)
Q Consensus 1 ~~~~~SGi~i~~e~~~a~~~l~~~~~~~~vi~~i~~~~~~i~v~~~~~~----~~~~~~~~~~L-~~~~pry~~y~~~~~ 75 (139)
|+ .|+||..++++.+.|++-+.++ +|.+...|++ +++.+..+.+. ..+|+.++..| .+.+|||+|||.+..
T Consensus 1 MS-~QtGI~A~e~l~~~l~~~~~~k-~R~ikIvI~n--Eql~~~s~~e~~~~w~~D~~~~v~~ll~~~ePcyILyrlds~ 76 (342)
T KOG1747|consen 1 MS-HQTGIRATEALKKFLNEAKNGK-LRLIKIVIEN--EQLSPGSTSEPSTSWERDYDKLVLPLLDAREPCYILYRLDSK 76 (342)
T ss_pred CC-cccccchHHHHHHHHHhcccCc-eEEEEEEEec--ccccCCccccccccHHHHHHHHHHHhhccCCceEEEEeecCC
Confidence 45 8999999999999999998886 8888888877 57888766443 34677777664 568999999998742
Q ss_pred cCcCCccceEEEEEEcCCCCCcchhhhhhhhHHHHHhhcCC--eeEEEEeCCCCCCCHHHHhhhc
Q 032498 76 TDENCQKSKIIFIAWSPDTSKVRSKMIYASSKDRFKRELDG--IQVELQATDPTEMGLDVMRSRS 138 (139)
Q Consensus 76 ~~~~~~~~k~vfI~w~P~~a~vk~kMlYassk~~l~~~l~g--~~~~i~~~~~~dl~~~~i~~~~ 138 (139)
..+|+||+|+||+||||+||||||||++|+++++| +..+.++|+++||+...+.+.+
T Consensus 77 ------~~~w~lIs~vPD~apVR~KMLYAsTrATlkrefG~~~i~ee~~~T~~~dl~~~~~~k~l 135 (342)
T KOG1747|consen 77 ------NAEWLLISWVPDNAPVRQKMLYASTRATLKREFGGAYITEELFATDLEDLTLLGYFKSL 135 (342)
T ss_pred ------CccEEEEEECCCCChHHHHHHHHHHHHHHHHHhccceeccccccCCHHHhhhHHHHHhh
Confidence 44999999999999999999999999999999986 4569999999999988876543
No 9
>KOG1747 consensus Protein tyrosine kinase 9/actin monomer-binding protein [Extracellular structures]
Probab=99.92 E-value=1.5e-24 Score=164.20 Aligned_cols=131 Identities=20% Similarity=0.412 Sum_probs=115.4
Q ss_pred CCC--ccCHHHHHHHHHHhhCCCceEEEEEEeCCceEEEEeecCCCCCCHHHHHhcCCCCCceeEEEEeeeecCcCCccc
Q 032498 6 SGM--AVDDDCKLKFLELKAKRTYRFIVFKIEEKQKQVVVEKLGEPSDSYENFTASLPADECRYAVYDFDFVTDENCQKS 83 (139)
Q Consensus 6 SGi--~i~~e~~~a~~~l~~~~~~~~vi~~i~~~~~~i~v~~~~~~~~~~~~~~~~L~~~~pry~~y~~~~~~~~~~~~~ 83 (139)
+|+ +++++..+|+++|+.++ ++||+|+|+..+++|.+..+.. ..+.+|+-..+|.+.|||.+|+|.+++ +|...+
T Consensus 173 ~Gva~pi~~~a~kAl~~L~~~~-~n~vql~ID~~nE~I~l~~t~~-~~e~sdL~s~vP~d~prY~ff~~~ht~-eGD~~e 249 (342)
T KOG1747|consen 173 QGVAFPIDRNAEKALQDLKSSK-LNYVQLSIDLENETIQLSQTDT-CTEPSDLPSRVPRDGPRYHFFLFKHTH-EGDPLE 249 (342)
T ss_pred cceeecccHHHHHHHHHHHhhc-cceEEEEeccccceeeeeccCC-CCChHHhhhhcCCCCCceEEEeccccc-CCCCce
Confidence 565 78999999999999987 8999999999889999998753 578999999999999999999999986 455688
Q ss_pred eEEEEEEcCC-CCCcchhhhhhhhHHHHHhhcC---C--eeEEEEeCCCCCCCHHHHhhhcC
Q 032498 84 KIIFIAWSPD-TSKVRSKMIYASSKDRFKRELD---G--IQVELQATDPTEMGLDVMRSRSN 139 (139)
Q Consensus 84 k~vfI~w~P~-~a~vk~kMlYassk~~l~~~l~---g--~~~~i~~~~~~dl~~~~i~~~~~ 139 (139)
.++|||-||. +|+||+||+|||+|..|...+. | +..+|++.|.+|||++.+.+.+|
T Consensus 250 s~~FIYS~P~~~~sVKeRMlYSScK~~fLd~~k~~~gi~i~kKiEi~d~~eLte~~L~e~~H 311 (342)
T KOG1747|consen 250 SIVFIYSMPGYGCSVKERMLYSSCKSGFLDSLKNDLGIVISKKIEIDDGAELTEKFLYEELH 311 (342)
T ss_pred eEEEEEECCCCCcchhhhhHhhhcchhHHHHHHHhcCeeEEEEEeeCcHHHhhHHHHHHhhC
Confidence 9999999999 9999999999999988876554 4 46799999999999998887765
No 10
>KOG3655 consensus Drebrins and related actin binding proteins [Cytoskeleton]
Probab=99.77 E-value=4.8e-18 Score=135.40 Aligned_cols=129 Identities=18% Similarity=0.304 Sum_probs=114.4
Q ss_pred CCCccCHHHHHHHHHHhhCC-CceEEEEEEeCCceEEEEeecCCCCCCHHHHHhcCCCCCceeEEEEeeeecCcCCccce
Q 032498 6 SGMAVDDDCKLKFLELKAKR-TYRFIVFKIEEKQKQVVVEKLGEPSDSYENFTASLPADECRYAVYDFDFVTDENCQKSK 84 (139)
Q Consensus 6 SGi~i~~e~~~a~~~l~~~~-~~~~vi~~i~~~~~~i~v~~~~~~~~~~~~~~~~L~~~~pry~~y~~~~~~~~~~~~~k 84 (139)
.+-.=..+|.++|+++..+. ...|++|++++....+.+..++ .+++++|++.+......|++++.. +.++...|
T Consensus 5 ~~~~~~aei~aaY~~v~~d~~dt~WaiF~Yeg~s~~~~~~~s~--~~~~~e~~~df~~~kv~yg~~rv~---D~~s~l~K 79 (484)
T KOG3655|consen 5 NTTTHGAEIRAAYERVVDDSSDTDWALFTYEGNSNDLKVAGSG--EGGLEEFLGDFDSGKVMYGFCRVK---DPMSGLPK 79 (484)
T ss_pred cccccHHHHHHHHHHhhccCCCceeEEEeecCCccceeeeccc--cccHHHHhhhcccCceeEEEEEec---CcccCCcc
Confidence 33334677999999998765 5899999999877777766665 678999999999999999999987 45678999
Q ss_pred EEEEEEcCCCCCcchhhhhhhhHHHHHhhcCCeeEEEEeCCCCCCCHHHHhhhcC
Q 032498 85 IIFIAWSPDTSKVRSKMIYASSKDRFKRELDGIQVELQATDPTEMGLDVMRSRSN 139 (139)
Q Consensus 85 ~vfI~w~P~~a~vk~kMlYassk~~l~~~l~g~~~~i~~~~~~dl~~~~i~~~~~ 139 (139)
||||.||++++++-+|-.+|+.+..+++.|+|+|++|+|++.+||+.+.|.++|+
T Consensus 80 fvLI~W~GE~vp~~Rka~~ath~a~v~~~lkg~hV~i~Ar~e~Dld~d~i~~~ls 134 (484)
T KOG3655|consen 80 FVLINWIGEGVPVLRKAKCATHKALVKNFLKGFHVEINARSEEDLDEDAIREKLS 134 (484)
T ss_pred eEEEEecCCccHHHhhhhhcchHHHHHHHhhcceEEEeccchhhcCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999874
No 11
>PRK09798 antitoxin MazE; Provisional
Probab=40.19 E-value=93 Score=19.45 Aligned_cols=54 Identities=4% Similarity=0.179 Sum_probs=35.4
Q ss_pred CCCCccCHHHHHHHHHHhhCCCceEEEEEEeCCceEEEEeecCCC-CCCHHHHHhcCCCCC
Q 032498 5 ASGMAVDDDCKLKFLELKAKRTYRFIVFKIEEKQKQVVVEKLGEP-SDSYENFTASLPADE 64 (139)
Q Consensus 5 ~SGi~i~~e~~~a~~~l~~~~~~~~vi~~i~~~~~~i~v~~~~~~-~~~~~~~~~~L~~~~ 64 (139)
+-||.|+..+.+.+ .+..+. -|-+.+.+ +.|++...... .-+++||++.+.++.
T Consensus 12 S~~vRIPk~~l~~l-~l~~g~---~vei~v~~--~~iiI~p~~~~~r~~l~eLla~~~~~~ 66 (82)
T PRK09798 12 SPAVRIPATLMQAL-NLNIDD---EVKIDLVD--GKLIIEPVRKEPVFTLAELVNDITPEN 66 (82)
T ss_pred cceEEcCHHHHHHc-CCCCCC---EEEEEEEC--CEEEEEECCCCCCCCHHHHHhcCCCcC
Confidence 45788888888765 233433 45666665 56777765332 358999999987764
No 12
>PRK11347 antitoxin ChpS; Provisional
Probab=38.97 E-value=98 Score=19.38 Aligned_cols=55 Identities=11% Similarity=0.252 Sum_probs=36.0
Q ss_pred CCCCCccCHHHHHHHHHHhhCCCceEEEEEEeCCceEEEEeecCCCCCCHHHHHhcCCCCCc
Q 032498 4 AASGMAVDDDCKLKFLELKAKRTYRFIVFKIEEKQKQVVVEKLGEPSDSYENFTASLPADEC 65 (139)
Q Consensus 4 ~~SGi~i~~e~~~a~~~l~~~~~~~~vi~~i~~~~~~i~v~~~~~~~~~~~~~~~~L~~~~p 65 (139)
.+-||.++.++.+.+ .+..+. -+-+.+.+ +.|++..... .-+++|+++.+.++.+
T Consensus 10 NS~~vriPk~il~~l-~l~~G~---~v~i~v~~--~~iii~p~~~-~~tL~eLla~~~~~~~ 64 (83)
T PRK11347 10 NSAGMVIPNIVMKEL-NLQPGQ---SVEAQVSN--NQLILTPISR-RYSLDELLAQCDMNAA 64 (83)
T ss_pred CceeEEeCHHHHHHc-CCCCCC---EEEEEEEC--CEEEEEECCC-CCCHHHHHhcCCcccc
Confidence 346788888888765 334444 35555555 4577766543 3689999998887653
No 13
>KOG4037 consensus Photoreceptor synaptic vesicle protein HRG4/UNC-119 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=33.78 E-value=1.4e+02 Score=21.96 Aligned_cols=48 Identities=25% Similarity=0.404 Sum_probs=28.1
Q ss_pred ceEEEEEEeC-CceEEEEeecCCCCC---CHHHHHhcCCCCCceeEEEEeee
Q 032498 27 YRFIVFKIEE-KQKQVVVEKLGEPSD---SYENFTASLPADECRYAVYDFDF 74 (139)
Q Consensus 27 ~~~vi~~i~~-~~~~i~v~~~~~~~~---~~~~~~~~L~~~~pry~~y~~~~ 74 (139)
+.+.-|+|-+ +++.+..+-.-++.. .+.--.+.|.++..||+=|+|..
T Consensus 86 IdFtrFkIRDldsg~VLFEIaKPp~eteE~l~a~ae~lspnagRyVRYqFtP 137 (240)
T KOG4037|consen 86 IDFTRFKIRDLDSGTVLFEIAKPPVETEERLPANAEDLSPNAGRYVRYQFTP 137 (240)
T ss_pred eeeEEEEEeeccCCcEEEEecCCCCcchhhcchhhhccCCcccceEEEeech
Confidence 5677788854 444444432222222 22233456888999999998863
No 14
>PF02680 DUF211: Uncharacterized ArCR, COG1888; InterPro: IPR003831 This entry describes proteins of unknown function.; PDB: 3BPD_I 2RAQ_F 2X3D_E.
Probab=32.55 E-value=56 Score=21.24 Aligned_cols=51 Identities=8% Similarity=0.160 Sum_probs=30.7
Q ss_pred HHHHHHHHhhCCCceEEEEEEeCCceEEEEeecCCCCCCHHHHHhcCCCCCc
Q 032498 14 CKLKFLELKAKRTYRFIVFKIEEKQKQVVVEKLGEPSDSYENFTASLPADEC 65 (139)
Q Consensus 14 ~~~a~~~l~~~~~~~~vi~~i~~~~~~i~v~~~~~~~~~~~~~~~~L~~~~p 65 (139)
+..++.++..-.+.+.-+..++.+++.+++.-.|. +.+|+++.+.+..-.+
T Consensus 22 ~A~~l~~~~gV~gVnitv~EvD~ete~lkitiEG~-~id~d~i~~~Ie~~Gg 72 (95)
T PF02680_consen 22 LAKALSELEGVDGVNITVVEVDVETENLKITIEGD-DIDFDEIKEAIEELGG 72 (95)
T ss_dssp HHHHHHTSTTEEEEEEEEEEE-SSEEEEEEEEEES-SE-HHHHHHHHHHTT-
T ss_pred HHHHHHhCCCcceEEEEEEEeeccccEEEEEEEeC-CCCHHHHHHHHHHcCC
Confidence 33344444333357777888998888777766664 6789988877654433
No 15
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=31.65 E-value=23 Score=23.92 Aligned_cols=35 Identities=14% Similarity=0.399 Sum_probs=17.6
Q ss_pred CHHHHHhcC---C-CCCceeEEEEeeeecCcCCccceEEEEEEcCCCC
Q 032498 52 SYENFTASL---P-ADECRYAVYDFDFVTDENCQKSKIIFIAWSPDTS 95 (139)
Q Consensus 52 ~~~~~~~~L---~-~~~pry~~y~~~~~~~~~~~~~k~vfI~w~P~~a 95 (139)
+|++|.+.+ . .+.+.|++|--... ..| -+||||-.
T Consensus 4 gy~~~~~~~~~~~~~~~~~fl~F~gs~d-~~g--------~sWCPDC~ 42 (119)
T PF06110_consen 4 GYDEFEKLVEEYENSGKPLFLLFTGSKD-ETG--------QSWCPDCV 42 (119)
T ss_dssp CHHHHHHHHHC--TTTSEEEEEEE--B--TTS---------BSSHHHH
T ss_pred CHHHHHHHHHHhhcCCCeEEEEEEccCC-CCC--------CcccHHHH
Confidence 466655544 3 34777887753321 111 26999843
No 16
>KOG2130 consensus Phosphatidylserine-specific receptor PtdSerR, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=31.22 E-value=31 Score=27.63 Aligned_cols=37 Identities=16% Similarity=0.199 Sum_probs=28.3
Q ss_pred CCCccCHHHHHHHHHHhhCCCceEEEEEEeCCceEEEE
Q 032498 6 SGMAVDDDCKLKFLELKAKRTYRFIVFKIEEKQKQVVV 43 (139)
Q Consensus 6 SGi~i~~e~~~a~~~l~~~~~~~~vi~~i~~~~~~i~v 43 (139)
+||.|+|....|++.|-.|+ .||++|--....+-|++
T Consensus 192 tsiHIDPlgTSAWNtll~Gh-KrW~LfPp~~p~~lvkv 228 (407)
T KOG2130|consen 192 TSIHIDPLGTSAWNTLLQGH-KRWVLFPPGTPPELVKV 228 (407)
T ss_pred ceeEECCcchHHHHHHhhcc-ceeEEcCCCCCCCceee
Confidence 56899999999999999987 69999965443333444
No 17
>COG1888 Uncharacterized protein conserved in archaea [Function unknown]
Probab=31.21 E-value=1.4e+02 Score=19.31 Aligned_cols=52 Identities=12% Similarity=0.189 Sum_probs=34.3
Q ss_pred HHHHHHHHHhhCCCceEEEEEEeCCceEEEEeecCCCCCCHHHHHhcCCCCCc
Q 032498 13 DCKLKFLELKAKRTYRFIVFKIEEKQKQVVVEKLGEPSDSYENFTASLPADEC 65 (139)
Q Consensus 13 e~~~a~~~l~~~~~~~~vi~~i~~~~~~i~v~~~~~~~~~~~~~~~~L~~~~p 65 (139)
++...+.++..=.+++..+..|+.+++.+.+.-.|. +-+|+++...+.+-.+
T Consensus 23 e~A~~lskl~gVegVNItv~eiD~et~~~~itIeG~-~ldydei~~~iE~~Gg 74 (97)
T COG1888 23 ELALELSKLEGVEGVNITVTEIDVETENLKITIEGT-NLDYDEIEEVIEELGG 74 (97)
T ss_pred HHHHHHhhcCCcceEEEEEEEeeehhcceEEEEEcC-CCCHHHHHHHHHHcCC
Confidence 444555555444468888888998777666655553 6789998877655444
No 18
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=29.79 E-value=1.2e+02 Score=27.30 Aligned_cols=49 Identities=10% Similarity=0.099 Sum_probs=38.5
Q ss_pred CceeEEEEeeeecCcCCccceEEEEEEcCCCCCcchhhhhhhhHHHHHhhcC
Q 032498 64 ECRYAVYDFDFVTDENCQKSKIIFIAWSPDTSKVRSKMIYASSKDRFKRELD 115 (139)
Q Consensus 64 ~pry~~y~~~~~~~~~~~~~k~vfI~w~P~~a~vk~kMlYassk~~l~~~l~ 115 (139)
.-||++..-... .+..-.|-..||+++.|+.-.+|--|-+...|++-|+
T Consensus 527 aDcYiVLKT~~d---dsG~L~weIfyWiG~eAtLDK~aCsAiHAVnLRN~Lg 575 (1255)
T KOG0444|consen 527 ADCYIVLKTTRD---DSGQLRWEIFYWIGEEATLDKGACSAIHAVNLRNHLG 575 (1255)
T ss_pred ccEEEEEEeecc---cccccceeEEEEecccccccchhhhHHHhhhhhhhhC
Confidence 457999876542 2345677788999999999999988888888888775
No 19
>PF05941 Chordopox_A20R: Chordopoxvirus A20R protein; InterPro: IPR010267 This family consists of several Chordopoxvirus A20R proteins. The A20R protein is required for DNA replication, is associated with the processive form of the viral DNA polymerase, and directly interacts with the viral proteins encoded by the D4R, D5R, and H5R open reading frames. A20R may contribute to the assembly or stability of the multiprotein DNA replication complex [].
Probab=29.33 E-value=2.3e+02 Score=22.70 Aligned_cols=71 Identities=15% Similarity=0.141 Sum_probs=45.2
Q ss_pred CCCCCCC--CccCHHHHHHHHHHhhCC-CceEEEEEEeCCceEEEEeecCCCCCCHHHHHhcC---CCCCceeEEEEee
Q 032498 1 MANAASG--MAVDDDCKLKFLELKAKR-TYRFIVFKIEEKQKQVVVEKLGEPSDSYENFTASL---PADECRYAVYDFD 73 (139)
Q Consensus 1 ~~~~~SG--i~i~~e~~~a~~~l~~~~-~~~~vi~~i~~~~~~i~v~~~~~~~~~~~~~~~~L---~~~~pry~~y~~~ 73 (139)
||...|| ++++++++++.+.+-..- .++++-|..=. +..+++....+...+.+++..- .-+-+.|+-.+.+
T Consensus 94 m~elgSG~~~~i~~~~k~~~d~i~~~~~di~FlRFv~f~--~~wilED~fS~~~~p~~~L~~a~~~Gl~~~p~l~i~V~ 170 (334)
T PF05941_consen 94 MMELGSGNEVQIDEEMKEACDAILADYPDIEFLRFVYFK--NRWILEDAFSKYSSPIEILKLASEEGLNVVPYLRIRVE 170 (334)
T ss_pred EEEecCCcccCCCHHHHHHHHHHHhhCCCceEEEEEEEc--CeEEEeeeccccCCHHHHHHHHHHHhhccCceEEEEEc
Confidence 4555666 478999999999986543 56666666555 5688887766555565654322 2234556665554
No 20
>PF11341 DUF3143: Protein of unknown function (DUF3143); InterPro: IPR021489 This family of proteins has no known function.
Probab=29.26 E-value=57 Score=19.55 Aligned_cols=29 Identities=7% Similarity=0.328 Sum_probs=25.0
Q ss_pred EEEEEcCCC-CCcchhhhhhhhHHHHHhhc
Q 032498 86 IFIAWSPDT-SKVRSKMIYASSKDRFKREL 114 (139)
Q Consensus 86 vfI~w~P~~-a~vk~kMlYassk~~l~~~l 114 (139)
+.|.|.+.+ ..++...-|+-+|..+-+.+
T Consensus 31 L~V~y~~~g~~~~~rsF~YsLSR~DvE~Ai 60 (63)
T PF11341_consen 31 LVVRYLQSGPQDIQRSFPYSLSREDVEAAI 60 (63)
T ss_pred EEEEEccCCCcccEEeccCcCCHHHHHHHH
Confidence 688999888 88889999999999997654
No 21
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=26.99 E-value=86 Score=21.85 Aligned_cols=26 Identities=42% Similarity=0.857 Sum_probs=18.9
Q ss_pred eeE-EEEeeeecCcCCccceEEEEEEcCCCCCcc
Q 032498 66 RYA-VYDFDFVTDENCQKSKIIFIAWSPDTSKVR 98 (139)
Q Consensus 66 ry~-~y~~~~~~~~~~~~~k~vfI~w~P~~a~vk 98 (139)
||= +|||+ ..+|+|++.|+-|....|
T Consensus 80 ryRLFFRy~-------s~skiIv~aWvNDe~tlR 106 (140)
T PF11663_consen 80 RYRLFFRYD-------SESKIIVYAWVNDEQTLR 106 (140)
T ss_pred eeeEEEEec-------CccCEEEEEEeCCCcchh
Confidence 554 46664 245999999999987766
No 22
>KOG2313 consensus Stress-induced protein UVI31+ [Signal transduction mechanisms]
Probab=26.81 E-value=90 Score=20.43 Aligned_cols=31 Identities=29% Similarity=0.641 Sum_probs=20.5
Q ss_pred CCCcchhhhhhhhHHHHHhhcCC--ee-EEEEeCCCCC
Q 032498 94 TSKVRSKMIYASSKDRFKRELDG--IQ-VELQATDPTE 128 (139)
Q Consensus 94 ~a~vk~kMlYassk~~l~~~l~g--~~-~~i~~~~~~d 128 (139)
+..-|.||+| ..|+.+|.+ +| ..|.+..|+|
T Consensus 66 s~v~RHRlVy----~~L~eEl~~~gvHAL~i~aKTP~e 99 (100)
T KOG2313|consen 66 SLVKRHRLVY----KALKEELAGTGVHALSIMAKTPSE 99 (100)
T ss_pred cHHHHHHHHH----HHHHHHhhccceeEEEeeccCCCC
Confidence 4567899999 445555544 55 3777777665
No 23
>COG3905 Predicted transcriptional regulator [Transcription]
Probab=26.07 E-value=62 Score=20.49 Aligned_cols=20 Identities=30% Similarity=0.356 Sum_probs=16.5
Q ss_pred CCCCccCHHHHHHHHHHhhC
Q 032498 5 ASGMAVDDDCKLKFLELKAK 24 (139)
Q Consensus 5 ~SGi~i~~e~~~a~~~l~~~ 24 (139)
+--|.+++++...++.|...
T Consensus 4 a~tirl~del~~rLd~lAe~ 23 (83)
T COG3905 4 AFTIRLDDELKRRLDELAEA 23 (83)
T ss_pred ceEEecCHHHHHHHHHHHHH
Confidence 33499999999999999764
No 24
>PF03400 DDE_Tnp_IS1: IS1 transposase; InterPro: IPR005063 Transposase proteins are necessary for efficient DNA transposition. This family represents bacterial IS1 transposases []. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated
Probab=25.90 E-value=1.4e+02 Score=20.36 Aligned_cols=43 Identities=19% Similarity=0.356 Sum_probs=31.9
Q ss_pred CCceEEEEEEeCCceEEEEeecCCC-CCCHHHHHhcCCCCCcee
Q 032498 25 RTYRFIVFKIEEKQKQVVVEKLGEP-SDSYENFTASLPADECRY 67 (139)
Q Consensus 25 ~~~~~vi~~i~~~~~~i~v~~~~~~-~~~~~~~~~~L~~~~pry 67 (139)
++..|+.+.++.++..|+--..|++ ..++..|.+.|++-++.+
T Consensus 18 ~n~~Wiw~A~dr~t~~Iva~v~G~Rs~~T~~~L~~~L~~~~i~~ 61 (131)
T PF03400_consen 18 KNKRWIWYAIDRKTGGIVAFVFGDRSDKTFRKLWALLKPFNIGF 61 (131)
T ss_pred CCceEEEEEEeccCCcceeEEEecchhhHHHHHhhhhccccceE
Confidence 3578999999988887876656654 457889999887655544
No 25
>PF12663 DUF3788: Protein of unknown function (DUF3788); InterPro: IPR024265 This family of functionally uncharacterised proteins is found in bacteria and archaea. Proteins in this family are typically between 137 and 149 amino acids in length and may be distantly related to RelE proteins.
Probab=25.27 E-value=94 Score=21.21 Aligned_cols=29 Identities=7% Similarity=0.153 Sum_probs=23.6
Q ss_pred ccCHHHHHHHHHHhhCCCceEEEEEEeCC
Q 032498 9 AVDDDCKLKFLELKAKRTYRFIVFKIEEK 37 (139)
Q Consensus 9 ~i~~e~~~a~~~l~~~~~~~~vi~~i~~~ 37 (139)
.+++.+++.|++-+..+.-+|+.|.|.++
T Consensus 91 ~~s~~~~~~~~~~~~~~~GkWl~~~V~~~ 119 (133)
T PF12663_consen 91 DLSPYVQELYDEAKTYGDGKWLMIEVRSE 119 (133)
T ss_pred hcCHHHHHHHHhCCCCCCCcEEEEEeCCh
Confidence 57889999999887766678999988763
No 26
>COG0081 RplA Ribosomal protein L1 [Translation, ribosomal structure and biogenesis]
Probab=22.92 E-value=2.2e+02 Score=21.53 Aligned_cols=30 Identities=23% Similarity=0.313 Sum_probs=22.6
Q ss_pred CCCCCc--cCHHHHHHHHHHhhCCCceEEEEEEeCC
Q 032498 4 AASGMA--VDDDCKLKFLELKAKRTYRFIVFKIEEK 37 (139)
Q Consensus 4 ~~SGi~--i~~e~~~a~~~l~~~~~~~~vi~~i~~~ 37 (139)
|++... +++++..++++++.+. +-|+.++.
T Consensus 138 MP~Pk~gTvt~Dv~~av~~~K~g~----v~~R~dk~ 169 (228)
T COG0081 138 MPNPKTGTVTDDVAKAVEELKKGT----VEFRADKA 169 (228)
T ss_pred CCCCCCCCCCcCHHHHHHHHhcCc----EEEEECCC
Confidence 345555 8999999999999975 55666654
No 27
>PF14234 DUF4336: Domain of unknown function (DUF4336)
Probab=22.86 E-value=1.1e+02 Score=23.96 Aligned_cols=27 Identities=30% Similarity=0.348 Sum_probs=21.9
Q ss_pred CCCccCHHHHHHHHHHhhC-CCceEEEE
Q 032498 6 SGMAVDDDCKLKFLELKAK-RTYRFIVF 32 (139)
Q Consensus 6 SGi~i~~e~~~a~~~l~~~-~~~~~vi~ 32 (139)
|.|+.++||++++++|-.. ..++||+.
T Consensus 36 SPvapT~el~~~l~~L~~~~G~VkyIVa 63 (285)
T PF14234_consen 36 SPVAPTPELKAELDELEAQHGPVKYIVA 63 (285)
T ss_pred CCCCCCHHHHHHHHHHhccCCceeEEEc
Confidence 6789999999999999433 35888886
No 28
>PRK04968 SecY interacting protein Syd; Provisional
Probab=22.66 E-value=1.7e+02 Score=21.32 Aligned_cols=32 Identities=25% Similarity=0.404 Sum_probs=21.6
Q ss_pred EEEEeCCceEEEEeecCCC-----CCCHHHHHhcCCC
Q 032498 31 VFKIEEKQKQVVVEKLGEP-----SDSYENFTASLPA 62 (139)
Q Consensus 31 i~~i~~~~~~i~v~~~~~~-----~~~~~~~~~~L~~ 62 (139)
++.+++.+.+|.++..|.. ..++.+|++.|.+
T Consensus 141 ~isv~N~sGeV~lE~~G~~~r~vLA~sL~eFL~~L~P 177 (181)
T PRK04968 141 VISVCNLSGEVILETLGTRKRTVLAPSLAEFLNQLEP 177 (181)
T ss_pred EEEEECCCCeEEEEeCCCCcceehhhCHHHHHHhCCc
Confidence 4455666677888877653 2477888888765
No 29
>COG0432 Uncharacterized conserved protein [Function unknown]
Probab=21.01 E-value=2.3e+02 Score=19.68 Aligned_cols=56 Identities=18% Similarity=0.336 Sum_probs=32.9
Q ss_pred CccCHHHHHHHHHHhhCCCceEEEEEEeCCceEEEEeecCCC--CCCHHHHHhcCCCCCce
Q 032498 8 MAVDDDCKLKFLELKAKRTYRFIVFKIEEKQKQVVVEKLGEP--SDSYENFTASLPADECR 66 (139)
Q Consensus 8 i~i~~e~~~a~~~l~~~~~~~~vi~~i~~~~~~i~v~~~~~~--~~~~~~~~~~L~~~~pr 66 (139)
+.|++++.+...+..-+.+. .++|. .-.+-.|.+.+ .++ ..++..+++.|-+....
T Consensus 19 vdIT~ev~~~v~esgv~~Gl-~~vf~-~HtTaal~inE-~ep~l~~Di~~~l~~lvP~~~~ 76 (137)
T COG0432 19 VDITDEVEKFVRESGVKNGL-LLVFV-PHTTAALTINE-AEPGLKEDIERFLEKLVPEGAG 76 (137)
T ss_pred EEchHHHHHHHHHcCCccce-EEEEe-cCcceEEEEec-CCCcHHHHHHHHHHHhCCCCCC
Confidence 47899999998887644332 34443 33344666655 333 23566677776555554
No 30
>PF14157 YmzC: YmzC-like protein; PDB: 3KVP_E.
Probab=20.03 E-value=1.3e+02 Score=17.99 Aligned_cols=17 Identities=24% Similarity=0.516 Sum_probs=13.3
Q ss_pred EEEEEeCCceEEEEeec
Q 032498 30 IVFKIEEKQKQVVVEKL 46 (139)
Q Consensus 30 vi~~i~~~~~~i~v~~~ 46 (139)
=||+++.++++|+|.+.
T Consensus 42 KIfkyd~~tNei~L~KE 58 (63)
T PF14157_consen 42 KIFKYDEDTNEITLKKE 58 (63)
T ss_dssp EEEEEETTTTEEEEEEE
T ss_pred EEEEeCCCCCeEEEEEe
Confidence 37888888888888764
Done!