Query 032498
Match_columns 139
No_of_seqs 120 out of 1035
Neff 8.2
Searched_HMMs 29240
Date Tue Mar 26 00:32:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032498.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032498hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1f7s_A Actin depolymerizing fa 100.0 4.3E-47 1.5E-51 263.5 15.7 139 1-139 1-139 (139)
2 2i2q_A Cofilin; N-terminal ser 100.0 9.9E-46 3.4E-50 256.0 15.2 135 3-139 1-135 (137)
3 2xfa_A Actin depolymerization 100.0 9.7E-46 3.3E-50 259.2 11.7 136 2-139 4-145 (148)
4 1cfy_A Cofilin; actin-binding, 100.0 3.9E-45 1.3E-49 254.7 14.6 135 3-138 1-136 (143)
5 2kvk_A Actin severing and dyna 100.0 2.5E-44 8.6E-49 251.0 15.1 133 3-138 1-133 (144)
6 1cnu_A Actophorin, ADF, cofili 100.0 4.6E-44 1.6E-48 247.6 16.2 133 6-139 1-133 (137)
7 2kd5_A ADF H, actin severing a 100.0 1E-43 3.5E-48 247.9 13.8 132 5-139 3-134 (144)
8 1tvj_A Cofilin; ADF, actin bin 100.0 2.7E-43 9.3E-48 251.0 15.6 135 4-139 1-154 (166)
9 2lj8_A Cofilin/actin depolymer 100.0 3.6E-43 1.2E-47 245.2 15.8 132 3-138 9-140 (144)
10 1vkk_A GMF-gamma, GLIA maturat 100.0 2E-43 7E-48 248.9 14.5 136 1-138 13-150 (154)
11 1ak6_A Destrin; actin depolyme 100.0 1.1E-43 3.7E-48 254.8 7.5 138 1-139 7-162 (174)
12 1m4j_A A6 gene product, twinfi 100.0 7.6E-43 2.6E-47 243.0 10.6 132 1-139 1-139 (142)
13 2vac_A Twinfilin-2; transferas 100.0 1.4E-41 4.7E-46 234.5 11.4 127 5-137 1-134 (134)
14 1v6f_A MGMF-beta, GLIA maturat 100.0 6.4E-41 2.2E-45 235.5 14.9 129 8-138 14-144 (151)
15 2w0i_A Twinfilin-2; cytoskelet 100.0 4.7E-41 1.6E-45 232.1 13.7 128 8-139 2-135 (135)
16 2d8b_A Twinfilin-1; cell-free 100.0 2.1E-40 7.1E-45 236.1 13.4 132 4-139 21-160 (166)
17 3daw_B Twinfilin-1, protein A6 100.0 2.4E-39 8E-44 230.1 15.2 132 4-139 16-155 (164)
18 1hqz_1 ABP1P, actin-binding pr 100.0 1.4E-39 4.8E-44 226.2 13.4 129 4-139 2-136 (141)
19 3q2b_A Pfadf1, cofilin/actin-d 100.0 7.2E-41 2.5E-45 228.2 6.4 117 3-131 2-122 (124)
20 2l72_A Tgadf, actin depolymeri 100.0 8.6E-40 2.9E-44 226.7 11.8 117 3-132 21-138 (139)
21 1x67_A Drebrin-like protein; c 100.0 3.5E-38 1.2E-42 220.4 13.9 130 4-138 4-139 (146)
22 1t3y_A Coactosin-like protein; 100.0 4.5E-34 1.5E-38 198.5 12.4 122 11-138 6-128 (141)
23 2ff3_A Gelsolin; protein-prote 59.2 38 0.0013 22.8 7.9 94 16-126 28-125 (150)
24 3cip_G Gelsolin; actin, dictyo 56.6 38 0.0013 22.0 8.1 94 16-126 9-106 (128)
25 1t44_G Chimera of gelsolin dom 54.5 45 0.0015 22.2 7.9 94 16-126 6-103 (147)
26 2raq_A Conserved protein MTH88 53.2 39 0.0013 21.1 5.3 52 13-65 23-74 (97)
27 3tu5_B Gelsolin, protein cordo 45.6 89 0.0031 23.4 7.3 95 16-126 24-121 (297)
28 2ay0_A Bifunctional PUTA prote 39.8 10 0.00034 21.2 0.9 24 1-24 1-24 (58)
29 2vik_A Villin 14T; actin-bindi 37.8 81 0.0028 20.4 7.7 89 23-126 12-103 (126)
30 2p2e_A Putative Fe-S biosynthe 35.7 43 0.0015 21.7 3.7 28 7-35 4-31 (128)
31 2x3d_A SSO6206; unknown functi 34.9 43 0.0015 20.9 3.3 53 13-66 22-74 (96)
32 2ygw_A Malonyl-COA decarboxyla 32.8 25 0.00085 28.2 2.5 35 50-90 191-225 (460)
33 3bpd_A Uncharacterized protein 32.5 24 0.00082 22.2 1.9 53 13-66 23-75 (100)
34 1ncq_A Coat protein VP1; HRV, 31.6 64 0.0022 24.1 4.5 15 85-99 147-161 (289)
35 3vbh_A EV71, genome polyprotei 30.9 68 0.0023 24.1 4.5 44 54-99 117-164 (297)
36 1fmd_1 Foot-and-mouth disease 30.5 44 0.0015 23.8 3.2 29 65-99 69-97 (208)
37 1tme_1 Theiler'S murine enceph 30.3 56 0.0019 24.3 3.9 33 66-98 121-153 (274)
38 2mev_1 Mengo virus coat protei 26.9 57 0.0019 24.3 3.4 33 66-98 121-153 (277)
39 1z7s_1 Human coxsackievirus A2 26.5 87 0.003 23.5 4.4 15 85-99 149-163 (298)
40 4goj_C Protein UNC-119 homolog 26.4 1E+02 0.0034 22.4 4.5 49 26-74 85-135 (240)
41 3gqq_A Protein UNC-119 homolog 24.4 1.4E+02 0.0047 21.0 4.8 49 26-74 40-90 (195)
42 1qqp_1 FMDV, protein (genome p 23.8 36 0.0012 24.4 1.8 29 65-99 69-97 (213)
43 2gpe_A Bifunctional protein PU 23.5 19 0.00063 19.2 0.2 24 1-24 1-24 (52)
44 1mvf_D MAZE protein, PEMI-like 22.6 54 0.0019 19.2 2.2 52 6-63 13-65 (82)
45 2fh1_A Gelsolin; calcium, cont 22.3 2.5E+02 0.0085 21.0 7.4 74 28-117 8-82 (344)
46 1bev_1 Bovine enterovirus coat 21.3 1.3E+02 0.0044 22.3 4.5 15 85-99 140-154 (281)
No 1
>1f7s_A Actin depolymerizing factor (ADF); KINK in alpha-helix 3, plant protein; HET: LDA; 2.00A {Arabidopsis thaliana} SCOP: d.109.1.2
Probab=100.00 E-value=4.3e-47 Score=263.53 Aligned_cols=139 Identities=85% Similarity=1.280 Sum_probs=118.8
Q ss_pred CCCCCCCCccCHHHHHHHHHHhhCCCceEEEEEEeCCceEEEEeecCCCCCCHHHHHhcCCCCCceeEEEEeeeecCcCC
Q 032498 1 MANAASGMAVDDDCKLKFLELKAKRTYRFIVFKIEEKQKQVVVEKLGEPSDSYENFTASLPADECRYAVYDFDFVTDENC 80 (139)
Q Consensus 1 ~~~~~SGi~i~~e~~~a~~~l~~~~~~~~vi~~i~~~~~~i~v~~~~~~~~~~~~~~~~L~~~~pry~~y~~~~~~~~~~ 80 (139)
|+|++|||.++++|+++|++++.++.+|||+|+|++++++|+++.+|+...+|++|.+.||+++|||++||+++++.+|+
T Consensus 1 ~~~~~sGi~v~~e~~~af~~~~~~~~~~~ii~~i~~~~~~i~v~~~g~~~~~~~el~~~L~~~~~rY~~~~~~~~~~~~~ 80 (139)
T 1f7s_A 1 MANAASGMAVHDDCKLRFLELKAKRTHRFIVYKIEEKQKQVVVEKVGQPIQTYEEFAACLPADECRYAIYDFDFVTAENC 80 (139)
T ss_dssp ----CCCCEECHHHHHHHHHHHHHCCCSEEEEEEETTTTEEEEEEECCSSCCHHHHHTTSCTTSCEEEEEEEEEECTTSC
T ss_pred CCcCccCcEeCHHHHHHHHHHHcCCCcEEEEEEECCCCcEEEEEeecCCCCCHHHHHHhCCCCCceEEEEEeeeeccccC
Confidence 88899999999999999999998767899999999988899999988766699999999999999999999999988899
Q ss_pred ccceEEEEEEcCCCCCcchhhhhhhhHHHHHhhcCCeeEEEEeCCCCCCCHHHHhhhcC
Q 032498 81 QKSKIIFIAWSPDTSKVRSKMIYASSKDRFKRELDGIQVELQATDPTEMGLDVMRSRSN 139 (139)
Q Consensus 81 ~~~k~vfI~w~P~~a~vk~kMlYassk~~l~~~l~g~~~~i~~~~~~dl~~~~i~~~~~ 139 (139)
.++||+||+|||++||+|+||+|||+|++|++.|+|++++|++++++||+++.|.+|++
T Consensus 81 ~~~k~vfI~w~P~~a~v~~KmlyAssk~~l~~~l~g~~v~i~a~d~~el~~~~i~~~~~ 139 (139)
T 1f7s_A 81 QKSKIFFIAWCPDIAKVRSKMIYASSKDRFKRELDGIQVELQATDPTEMDLDVFRSRAN 139 (139)
T ss_dssp EEEEEEEEEECCTTSCHHHHHHHHHHHHHHHTTCTTCCEEEEECCTTC-----------
T ss_pred cccCEEEEEECCCCCChhHheehHHhHHHHHHhcCCeEEEEEECChHHCCHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999999999875
No 2
>2i2q_A Cofilin; N-terminal serine, actin-binding protein; HET: LDA; 1.72A {Schizosaccharomyces pombe}
Probab=100.00 E-value=9.9e-46 Score=256.02 Aligned_cols=135 Identities=39% Similarity=0.790 Sum_probs=115.1
Q ss_pred CCCCCCccCHHHHHHHHHHhhCCCceEEEEEEeCCceEEEEeecCCCCCCHHHHHhcCCCCCceeEEEEeeeecCcCCcc
Q 032498 3 NAASGMAVDDDCKLKFLELKAKRTYRFIVFKIEEKQKQVVVEKLGEPSDSYENFTASLPADECRYAVYDFDFVTDENCQK 82 (139)
Q Consensus 3 ~~~SGi~i~~e~~~a~~~l~~~~~~~~vi~~i~~~~~~i~v~~~~~~~~~~~~~~~~L~~~~pry~~y~~~~~~~~~~~~ 82 (139)
||+|||+++++|.++|++++.++.++||+|+|+.++++|+++. +..+.+|++|.+.||+++|||++||+++++.+| .+
T Consensus 1 ~~~sGi~v~~e~~~a~~~~~~~~~~~~ii~~i~~~~~~i~v~~-~~~~~~~~el~~~L~~~~~rY~~~~~~~~~~~~-~~ 78 (137)
T 2i2q_A 1 MSFSGVKVSPECLEAFQELKLGKSLRYVVFKMNDTKTEIVVEK-KSTDKDFDTFLGDLPEKDCRYAIYDFEFNLGEG-VR 78 (137)
T ss_dssp -CCSCCEECHHHHHHHHHHHHTCCCSEEEEEECTTSSEEEEEE-EECCCCHHHHHHTSCSSSCEEEEEEEEECSSSS-CE
T ss_pred CCCCCcccCHHHHHHHHHHHCCCCceEEEEEECCCCcEEEEec-CCCCCCHHHHHHhCCCcCceEEEEEeeeecCCC-Cc
Confidence 4689999999999999999998778999999998888999987 445689999999999999999999999988777 78
Q ss_pred ceEEEEEEcCCCCCcchhhhhhhhHHHHHhhcCCeeEEEEeCCCCCCCHHHHhhhcC
Q 032498 83 SKIIFIAWSPDTSKVRSKMIYASSKDRFKRELDGIQVELQATDPTEMGLDVMRSRSN 139 (139)
Q Consensus 83 ~k~vfI~w~P~~a~vk~kMlYassk~~l~~~l~g~~~~i~~~~~~dl~~~~i~~~~~ 139 (139)
++|+||+|||++||+|+||+|||+|++|++.|+|++++||+++++||+++.+.++++
T Consensus 79 ~k~vfI~w~Pd~a~vk~KMlyassk~~l~~~l~g~~~~i~a~d~~el~~~~i~~kl~ 135 (137)
T 2i2q_A 79 NKIIFISWSPDVAPIKSKMVYSSSKDTLRRAFTGIGTDIQATDFSEVAYETVLEKVT 135 (137)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHHHHHHTTCCCCCEEEEECCCC------------
T ss_pred cCEEEEEECCCCCChhHhhhhHHHHHHHHHHhcCceEEEEECChHHcCHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999999875
No 3
>2xfa_A Actin depolymerization factor 2; actin binding protein, protein binding; 2.10A {Plasmodium berghei}
Probab=100.00 E-value=9.7e-46 Score=259.16 Aligned_cols=136 Identities=32% Similarity=0.538 Sum_probs=124.9
Q ss_pred CCCCCCCccCHHHHHHHHHHhhCCCceEEEEEEeCCceEEEEe------ecCCCCCCHHHHHhcCCCCCceeEEEEeeee
Q 032498 2 ANAASGMAVDDDCKLKFLELKAKRTYRFIVFKIEEKQKQVVVE------KLGEPSDSYENFTASLPADECRYAVYDFDFV 75 (139)
Q Consensus 2 ~~~~SGi~i~~e~~~a~~~l~~~~~~~~vi~~i~~~~~~i~v~------~~~~~~~~~~~~~~~L~~~~pry~~y~~~~~ 75 (139)
|.++|||.++++|+++|++++.++.+|||+|+| .++++|+++ .+|+.+.+|++|++.||+++|||++||++++
T Consensus 4 msm~sGi~v~~e~~~af~~~k~~k~~~~ii~~i-~~~~~i~v~~~~~~~~~g~~~~~~~~~~~~L~~~~prY~~y~~~~~ 82 (148)
T 2xfa_A 4 GSMVSGVNVSDECIYEFNRLKVKHLNKYIIYKI-ENLEKIVVDVLEHDMELTSLDNIIMRIKNNLKNTECRYIIADMPIP 82 (148)
T ss_dssp --CCCCCEECHHHHHHHHHHHTSCCCSEEEEEE-ETTTEEEEEEEECCTTCCCHHHHHHHHHHTCBTTBCEEEEEEEEEC
T ss_pred ccccCCCeeCHHHHHHHHHHHCCCceEEEEEEE-CCCCEEEEEecccccccCCCCCCHHHHHHhCCcCCcEEEEEecccc
Confidence 558899999999999999999987799999999 556889998 6664446899999999999999999999999
Q ss_pred cCcCCccceEEEEEEcCCCCCcchhhhhhhhHHHHHhhcCCeeEEEEeCCCCCCCHHHHhhhcC
Q 032498 76 TDENCQKSKIIFIAWSPDTSKVRSKMIYASSKDRFKRELDGIQVELQATDPTEMGLDVMRSRSN 139 (139)
Q Consensus 76 ~~~~~~~~k~vfI~w~P~~a~vk~kMlYassk~~l~~~l~g~~~~i~~~~~~dl~~~~i~~~~~ 139 (139)
+.+|+.+++|+||+|||++||+|+||+|||+|++|++.|+|++++||+++ +||+++.+.++++
T Consensus 83 ~~~g~~~~k~vfI~w~Pd~a~vr~KMlYAssk~~lk~~l~g~~~~i~atd-~el~~~~i~~k~~ 145 (148)
T 2xfa_A 83 TPEGVLRDRIYFIFWSPGLSKPKEKMLYAASKESLVRKINGIFKSLEITC-DINEFEEELKAII 145 (148)
T ss_dssp CSSCCCEEEEEEEEECCTTSCHHHHHHHHHHHHHHHTTCTTCSEEEEECS-CGGGHHHHHHHHH
T ss_pred cCCCCcccCEEEEEECCCCCChHHHhHhHHHHHHHHHHhcCCeEEEEEEc-ccCCHHHHHHHhh
Confidence 88888999999999999999999999999999999999999999999999 9999999999873
No 4
>1cfy_A Cofilin; actin-binding, cytoskeleton, actin-binding protein; 2.30A {Saccharomyces cerevisiae} SCOP: d.109.1.2 PDB: 1cof_A 1qpv_A
Probab=100.00 E-value=3.9e-45 Score=254.68 Aligned_cols=135 Identities=41% Similarity=0.784 Sum_probs=123.9
Q ss_pred CCCCCCccCHHHHHHHHHHhhCCCceEEEEEEeCCceEEEEeecCCCCCCHHHHHhcCCCCCceeEEEEeeeecCcC-Cc
Q 032498 3 NAASGMAVDDDCKLKFLELKAKRTYRFIVFKIEEKQKQVVVEKLGEPSDSYENFTASLPADECRYAVYDFDFVTDEN-CQ 81 (139)
Q Consensus 3 ~~~SGi~i~~e~~~a~~~l~~~~~~~~vi~~i~~~~~~i~v~~~~~~~~~~~~~~~~L~~~~pry~~y~~~~~~~~~-~~ 81 (139)
||+|||.++++|.++|++++.++.++||+|+|++++++|+++.+|+ +.+|++|++.||+++|||++||+++++.+| +.
T Consensus 1 ~~~sGi~v~~e~~~a~~~~~~~~~~~~ii~~i~~~~~~i~v~~~g~-~~~~~el~~~L~~~~~rY~~~~~~~~~~~~~~~ 79 (143)
T 1cfy_A 1 MSRSGVAVADESLTAFNDLKLGKKYKFILFGLNDAKTEIVVKETST-DPSYDAFLEKLPENDCLYAIYDFEYEINGNEGK 79 (143)
T ss_dssp -----CEECHHHHHHHHHHHHHCCCSEEEEEECTTSSEEEEEEEEC-CCCHHHHHTTSCTTCCEEEEEEEEEECSSSCCE
T ss_pred CCcCCcEeCHHHHHHHHHHHCCCCeeEEEEEEcCCCCEEEEEecCC-CCCHHHHHHhCCCCCcEEEEEEeeeecCCCccc
Confidence 4689999999999999999988779999999998888999998875 679999999999999999999999988887 88
Q ss_pred cceEEEEEEcCCCCCcchhhhhhhhHHHHHhhcCCeeEEEEeCCCCCCCHHHHhhhc
Q 032498 82 KSKIIFIAWSPDTSKVRSKMIYASSKDRFKRELDGIQVELQATDPTEMGLDVMRSRS 138 (139)
Q Consensus 82 ~~k~vfI~w~P~~a~vk~kMlYassk~~l~~~l~g~~~~i~~~~~~dl~~~~i~~~~ 138 (139)
++||+||+|||+++|+|+||+|||+|.+|++.|+|++++|++++++||+++.+.+|+
T Consensus 80 ~~k~vfI~w~Pd~a~v~~KmlyAssk~~l~~~l~g~~~~i~a~d~~el~~~~i~~kl 136 (143)
T 1cfy_A 80 RSKIVFFTWSPDTAPVRSKMVYASSKDALRRALNGVSTDVQGTDFSEVSYDSVLERV 136 (143)
T ss_dssp EEEEEEEEECCTTSCHHHHHHHHHHHHHHHHHCTTCCEEEEESSGGGGSHHHHHHHH
T ss_pred ccCEEEEEECCCCCChhheeehHhhHHHHHHhcCCceEEEEeCChHHCCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999886
No 5
>2kvk_A Actin severing and dynamics regulatory protein; ADF/cofilin, hormone; NMR {Leishmania donovani}
Probab=100.00 E-value=2.5e-44 Score=251.04 Aligned_cols=133 Identities=25% Similarity=0.540 Sum_probs=123.8
Q ss_pred CCCCCCccCHHHHHHHHHHhhCCCceEEEEEEeCCceEEEEeecCCCCCCHHHHHhcCCCCCceeEEEEeeeecCcCCcc
Q 032498 3 NAASGMAVDDDCKLKFLELKAKRTYRFIVFKIEEKQKQVVVEKLGEPSDSYENFTASLPADECRYAVYDFDFVTDENCQK 82 (139)
Q Consensus 3 ~~~SGi~i~~e~~~a~~~l~~~~~~~~vi~~i~~~~~~i~v~~~~~~~~~~~~~~~~L~~~~pry~~y~~~~~~~~~~~~ 82 (139)
|++|||.++++|+++|++|+.++ .|||+|+|+.++++|+++.+++.+.+|++|.+.||+++|||++||+.+++. ++.+
T Consensus 1 Ma~SGv~v~de~~~af~~lk~~k-~~~vi~~I~~~~~~i~v~~~~~~~~~~~e~~~~L~~~~prY~~y~~~~~~~-~~~~ 78 (144)
T 2kvk_A 1 MAISGVTLEESVRGAIDDLRMKK-SRYVMMCIGADGKKIEVTEVGERSVNYTDLKEKFSTEKPCYVAFDFEYNDA-GSKR 78 (144)
T ss_dssp CCCCCCEECHHHHHHHHHHHTTS-SSEEEEEECTTSCEEEEEEEECTTCCHHHHHHTCCTTSCCEEEEEEEEEET-TEEE
T ss_pred CCcCCcccCHHHHHHHHHHhcCC-ceEEEEEEeCCCcEEEEEeccCCCCCHHHHHHhCCccCceEEEEEeeeccC-CCCc
Confidence 47899999999999999999876 799999999999999999988778899999999999999999999999764 4568
Q ss_pred ceEEEEEEcCCCCCcchhhhhhhhHHHHHhhcCCeeEEEEeCCCCCCCHHHHhhhc
Q 032498 83 SKIIFIAWSPDTSKVRSKMIYASSKDRFKRELDGIQVELQATDPTEMGLDVMRSRS 138 (139)
Q Consensus 83 ~k~vfI~w~P~~a~vk~kMlYassk~~l~~~l~g~~~~i~~~~~~dl~~~~i~~~~ 138 (139)
+||+||+|||++||+|+||+|||+|.+|++.|+| +++||++|++||+++.|.+|+
T Consensus 79 ~k~vfI~w~Pd~a~vk~KMlyassk~~lk~~l~~-~~~i~a~d~~el~~e~i~~kl 133 (144)
T 2kvk_A 79 EKLILIQWIPDTARPREKMMYSASRDALSSVSEG-YLPIQANDESGLDAEEIIRKV 133 (144)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHHHHHHHHCTT-EEEEEESSGGGGCHHHHHHHH
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHHHHHHhcCC-EEEEEECChHHCCHHHHHHHH
Confidence 8999999999999999999999999999999987 579999999999999999886
No 6
>1cnu_A Actophorin, ADF, cofilin; actin-binding protein, contractIle; 2.25A {Acanthamoeba polyphaga} SCOP: d.109.1.2 PDB: 1ahq_A
Probab=100.00 E-value=4.6e-44 Score=247.56 Aligned_cols=133 Identities=47% Similarity=0.887 Sum_probs=125.4
Q ss_pred CCCccCHHHHHHHHHHhhCCCceEEEEEEeCCceEEEEeecCCCCCCHHHHHhcCCCCCceeEEEEeeeecCcCCccceE
Q 032498 6 SGMAVDDDCKLKFLELKAKRTYRFIVFKIEEKQKQVVVEKLGEPSDSYENFTASLPADECRYAVYDFDFVTDENCQKSKI 85 (139)
Q Consensus 6 SGi~i~~e~~~a~~~l~~~~~~~~vi~~i~~~~~~i~v~~~~~~~~~~~~~~~~L~~~~pry~~y~~~~~~~~~~~~~k~ 85 (139)
|||+++++|.++|++|+.++.++||+|+|+.++++|+++.+|+++.+|++|.+.||+++|||++||+++++.+| .++++
T Consensus 1 SGi~v~~e~~~a~~~~~~~~~~~~ii~~i~~~~~~i~v~~~g~~~~~~~el~~~L~~~~~rY~~~~~~~~~~~~-~~~k~ 79 (137)
T 1cnu_A 1 SGIAVSDDCVQKFNELKLGHQHRYVTFKMNASNTEVVVEHVGGPNATYEDFKSQLPERDCRYAIFDYEFQVDGG-QRNKI 79 (137)
T ss_dssp -CCEECHHHHHHHHHHHHHCCCSEEEEEECTTSSEEEEEEECCTTCCHHHHHTTSCTTSCEEEEEEEEEEETTE-EEEEE
T ss_pred CCCccCHHHHHHHHHHHcCCCccEEEEEEcCCCCEEEEEeccCCCCCHHHHHHhCCCCCceEEEEEeeeecCCC-CccCE
Confidence 79999999999999999986789999999988899999998866789999999999999999999999988776 78999
Q ss_pred EEEEEcCCCCCcchhhhhhhhHHHHHhhcCCeeEEEEeCCCCCCCHHHHhhhcC
Q 032498 86 IFIAWSPDTSKVRSKMIYASSKDRFKRELDGIQVELQATDPTEMGLDVMRSRSN 139 (139)
Q Consensus 86 vfI~w~P~~a~vk~kMlYassk~~l~~~l~g~~~~i~~~~~~dl~~~~i~~~~~ 139 (139)
+||+|||++||+|+||+|||+|++|++.|+|++++|++++++||+++.+.++++
T Consensus 80 vfI~w~Pd~a~v~~Kmlyassk~~l~~~l~g~~~~i~a~~~~el~~~~i~~kl~ 133 (137)
T 1cnu_A 80 TFILWAPDSAPIKSKMMYTSTKDSIKKKLVGIQVEVQATDAAEISEDAVSERAK 133 (137)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHHHHSTTCCEEEEECSTTTTSHHHHHHHHT
T ss_pred EEEEECCCCCChHHheehHHhHHHHHHHhcCceEEEEECChHHCCHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999875
No 7
>2kd5_A ADF H, actin severing and dynamics regulatory protein; cofilin, solution structure, hormone; NMR {Leishmania donovani} PDB: 2kvk_A
Probab=100.00 E-value=1e-43 Score=247.92 Aligned_cols=132 Identities=24% Similarity=0.544 Sum_probs=124.5
Q ss_pred CCCCccCHHHHHHHHHHhhCCCceEEEEEEeCCceEEEEeecCCCCCCHHHHHhcCCCCCceeEEEEeeeecCcCCccce
Q 032498 5 ASGMAVDDDCKLKFLELKAKRTYRFIVFKIEEKQKQVVVEKLGEPSDSYENFTASLPADECRYAVYDFDFVTDENCQKSK 84 (139)
Q Consensus 5 ~SGi~i~~e~~~a~~~l~~~~~~~~vi~~i~~~~~~i~v~~~~~~~~~~~~~~~~L~~~~pry~~y~~~~~~~~~~~~~k 84 (139)
+|||.++++|+++|++++.++ ++|++|+|+.++++|+++.+|..+++|++|++.||+++|||++||+.+++.+ +.+++
T Consensus 3 ~SGi~vs~e~~~a~~~~~~~~-~~~ii~~i~~~~~~i~v~~~g~~~~~~~el~~~L~~~~~rY~~~~~~~~~~~-~~~~k 80 (144)
T 2kd5_A 3 ISGVTLEESVRGAIDDLRMKK-SRYVMMCIGADGKKIEVTEVGERSVNYTDLKEKFSTEKPCYVAFDFEYNDAG-SKREK 80 (144)
T ss_dssp CCSCBCCHHHHHHHHHHTTTS-SSEEEEEECSSSCBEEEEEECCSCCCHHHHTTTTSCSSCEEEEEEEEEESSS-CEEEE
T ss_pred ccCCCcCHHHHHHHHHHHcCC-eeEEEEEECCCCCEEEEEeccCCCCCHHHHHHhCCccCcEEEEEEEEecCCC-CCccC
Confidence 399999999999999999987 9999999998888999999887678999999999999999999999998766 56899
Q ss_pred EEEEEEcCCCCCcchhhhhhhhHHHHHhhcCCeeEEEEeCCCCCCCHHHHhhhcC
Q 032498 85 IIFIAWSPDTSKVRSKMIYASSKDRFKRELDGIQVELQATDPTEMGLDVMRSRSN 139 (139)
Q Consensus 85 ~vfI~w~P~~a~vk~kMlYassk~~l~~~l~g~~~~i~~~~~~dl~~~~i~~~~~ 139 (139)
++||+|||+++|+|+||+|||+|.+|++.|+|+ ++|++++++||+++.|.+|++
T Consensus 81 ~vfI~w~Pd~a~vk~KMlyAssk~~l~~~l~g~-~~i~a~d~~el~~~~i~~kl~ 134 (144)
T 2kd5_A 81 LILIQWIPDTARPREKMMYSASRDALSSVSEGY-LPIQANDESGLDAEEIIRKVR 134 (144)
T ss_dssp EEEEEECCCCSCSHHHHHHHHHGGGGTTTTCCS-EEEEESSSSSSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHhhhHHHHHHHHHHhCCe-EEEEECChHHCCHHHHHHHHh
Confidence 999999999999999999999999999999999 999999999999999999863
No 8
>1tvj_A Cofilin; ADF, actin binding protein, actin depolymerizing factor, actin-binding protein; NMR {Gallus gallus}
Probab=100.00 E-value=2.7e-43 Score=251.01 Aligned_cols=135 Identities=34% Similarity=0.705 Sum_probs=124.1
Q ss_pred CCCCCccCHHHHHHHHHHhhCC---------CceEEEEEEeCCceEEEEee--------cCCC-CCCHHHHHhcCCCCCc
Q 032498 4 AASGMAVDDDCKLKFLELKAKR---------TYRFIVFKIEEKQKQVVVEK--------LGEP-SDSYENFTASLPADEC 65 (139)
Q Consensus 4 ~~SGi~i~~e~~~a~~~l~~~~---------~~~~vi~~i~~~~~~i~v~~--------~~~~-~~~~~~~~~~L~~~~p 65 (139)
|+|||.++++|+++|++|+.++ .+||++|+|++++.+|++++ .+++ +.+|++|++.||+++|
T Consensus 1 m~SGi~vs~e~~~~f~~~k~~k~~~~~~~~~~~~~iifki~~~~~~iivee~~~~~~~~~~~~~~~~~~ef~~~L~~~~p 80 (166)
T 1tvj_A 1 MASGVTVNDEVIKVFNDMKVRKSSTPEEIKKRKKAVLFCLSDDKKQIIVEEAKQILVGDIGDTVEDPYTAFVKLLPLNDC 80 (166)
T ss_dssp CCCCCEECHHHHHHHHHHHSCCCSCHHHHTTCEEEEEEEECTTSSEEEEEEEEEEETTTBTTTBSCHHHHHHHHCCTTSC
T ss_pred CCCCCeeCHHHHHHHHHHhcCCCccccccccceeEEEEEECCCCcEEEEeccccccccccCccccCCHHHHHHhCCCCCc
Confidence 5799999999999999999875 48999999999888899986 4433 5789999999999999
Q ss_pred eeEEEEeeeecCcCCccceEEEEEEcCCCCCcchhhhhhhhHHHHHhhcCCeeEEEEeCCCCCC-CHHHHhhhcC
Q 032498 66 RYAVYDFDFVTDENCQKSKIIFIAWSPDTSKVRSKMIYASSKDRFKRELDGIQVELQATDPTEM-GLDVMRSRSN 139 (139)
Q Consensus 66 ry~~y~~~~~~~~~~~~~k~vfI~w~P~~a~vk~kMlYassk~~l~~~l~g~~~~i~~~~~~dl-~~~~i~~~~~ 139 (139)
||++||+++++.+| .+++|+||+|||++||+|+||+|||+|++|++.|+|++++||+++++|| +++++.+||.
T Consensus 81 rY~vy~~~~~~~~~-~~~klvfI~W~Pd~a~vr~KMlYAssk~~lk~~l~gi~~~i~atd~~el~~~~~i~ekl~ 154 (166)
T 1tvj_A 81 RYALYDATYETKES-KKEDLVFIFWAPESAPLKSKMIYASSKDAIKKKFTGIKHEWQVNGLDDIKDRSTLGEKLG 154 (166)
T ss_dssp EEEEEEEEEEESSC-EEEEEEEEEECCTTSCHHHHHHHHHHHHHHHHTTTTCCCEEEESSGGGTCCHHHHHHHHT
T ss_pred EEEEEeccccCCCC-CccCEEEEEECCCCCCHHHhhHHHHhHHHHHHHhcCCeEEEEECChHHcCCHHHHHHHhC
Confidence 99999999987765 7999999999999999999999999999999999999999999999999 9999999874
No 9
>2lj8_A Cofilin/actin depolymerizing factor, putative; protein binding; NMR {Trypanosoma brucei}
Probab=100.00 E-value=3.6e-43 Score=245.20 Aligned_cols=132 Identities=29% Similarity=0.653 Sum_probs=120.4
Q ss_pred CCCCCCccCHHHHHHHHHHhhCCCceEEEEEEeCCceEEEEeecCCCCCCHHHHHhcCCCCCceeEEEEeeeecCcCCcc
Q 032498 3 NAASGMAVDDDCKLKFLELKAKRTYRFIVFKIEEKQKQVVVEKLGEPSDSYENFTASLPADECRYAVYDFDFVTDENCQK 82 (139)
Q Consensus 3 ~~~SGi~i~~e~~~a~~~l~~~~~~~~vi~~i~~~~~~i~v~~~~~~~~~~~~~~~~L~~~~pry~~y~~~~~~~~~~~~ 82 (139)
|++|||.+++||.++|++|+.++ .||++|+|+++ ++++++..+..+.+|++|++.||+++|||++|+|.+.+.++ .+
T Consensus 9 Ma~SGi~vsde~~~af~~lk~~k-~~~ii~~i~d~-~~~vv~~~~~~~~~~de~~~~L~~~~prY~~y~~~~~~~~~-~~ 85 (144)
T 2lj8_A 9 MAMSGVSVADECVTALNDLRHKK-SRYVIMHIVDQ-KSIAVKTIGERGANFDQFIEAIDKNVPCYAAFDFEYTTNDG-PR 85 (144)
T ss_dssp CCCSSCEECHHHHHHHHHHTTTS-SSEEEEEEETT-TEEEEEEECSSCCCHHHHHHHCCSSSCEEEEEEEEECSSSS-SE
T ss_pred cccCCceeCHHHHHHHHHHhcCC-ceEEEEEEECC-cEEEEEecCCCCCCHHHHHHhCcccCCcceeeeeeeccCCC-Cc
Confidence 57799999999999999999876 79999999876 45667777777889999999999999999999999987655 57
Q ss_pred ceEEEEEEcCCCCCcchhhhhhhhHHHHHhhcCCeeEEEEeCCCCCCCHHHHhhhc
Q 032498 83 SKIIFIAWSPDTSKVRSKMIYASSKDRFKRELDGIQVELQATDPTEMGLDVMRSRS 138 (139)
Q Consensus 83 ~k~vfI~w~P~~a~vk~kMlYassk~~l~~~l~g~~~~i~~~~~~dl~~~~i~~~~ 138 (139)
++|+||+|||++||+|+||+|||+|++|++.|+|++ +||++|++||+++.|.+++
T Consensus 86 ~k~vfI~w~Pd~a~vk~KMlYASsk~~l~~~l~~~~-~i~a~d~~el~~e~i~~kl 140 (144)
T 2lj8_A 86 DKLILISWNPDSGAPRTKMLYSSSRDALVPLTQGFQ-GIQANDASGLDFEEISRKV 140 (144)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHHHHHHHHTTTSE-EEECCGGGTSCHHHHHHHH
T ss_pred ccEEEEEEcCCCCCHHHHHHHHHHHHHHHHHhCCee-EEEeCChHHCCHHHHHHHH
Confidence 899999999999999999999999999999998886 8999999999999999986
No 10
>1vkk_A GMF-gamma, GLIA maturation factor gamma; 15079298, structural GEN JCSG, protein structure initiative, PSI, joint center for S genomics; 1.35A {Mus musculus} SCOP: d.109.1.2 PDB: 1wfs_A 3l50_A
Probab=100.00 E-value=2e-43 Score=248.86 Aligned_cols=136 Identities=21% Similarity=0.362 Sum_probs=123.9
Q ss_pred CCCCCCCCccCHHHHHHHHHHhhCC--CceEEEEEEeCCceEEEEeecCCCCCCHHHHHhcCCCCCceeEEEEeeeecCc
Q 032498 1 MANAASGMAVDDDCKLKFLELKAKR--TYRFIVFKIEEKQKQVVVEKLGEPSDSYENFTASLPADECRYAVYDFDFVTDE 78 (139)
Q Consensus 1 ~~~~~SGi~i~~e~~~a~~~l~~~~--~~~~vi~~i~~~~~~i~v~~~~~~~~~~~~~~~~L~~~~pry~~y~~~~~~~~ 78 (139)
|..+.||++++++|.++|++|+.++ .++||+|+|+.++++|+|+++++ +.+|++|++.||+++|||++|||++++.+
T Consensus 13 ~~~~~~~~~v~~e~~~a~~~lk~~k~~~~~~iifkId~~~~~I~v~~~~~-~~~~~e~~~~Lp~~~pRY~vy~~~~~~~~ 91 (154)
T 1vkk_A 13 MSDSLVVCEVDPELKETLRKFRFRKETNNAAIIMKVDKDRQMVVLEDELQ-NISPEELKLELPERQPRFVVYSYKYVHDD 91 (154)
T ss_dssp -----CCCEECHHHHHHHHHHHTCCCCSCEEEEEEEETTTTEEEEEEEEE-SCCHHHHHHHSCSSSCEEEEEECCEECTT
T ss_pred ccccccceeeCHHHHHHHHHHHhcccCCccEEEEEEcCCCCEEEEEEcCC-CCCHHHHHHhCCCCCcEEEEEEeeeccCC
Confidence 4456789999999999999999865 58999999999888999998654 57899999999999999999999999888
Q ss_pred CCccceEEEEEEcCCCCCcchhhhhhhhHHHHHhhcCCeeEEEEeCCCCCCCHHHHhhhc
Q 032498 79 NCQKSKIIFIAWSPDTSKVRSKMIYASSKDRFKRELDGIQVELQATDPTEMGLDVMRSRS 138 (139)
Q Consensus 79 ~~~~~k~vfI~w~P~~a~vk~kMlYassk~~l~~~l~g~~~~i~~~~~~dl~~~~i~~~~ 138 (139)
|+.+++++||+|||++|++|+||+|||+|++|++.| |++++|||+|++||+++.|.++|
T Consensus 92 g~~~~klvFI~w~P~~a~vk~KMlYAssk~~l~~~l-gi~~~iea~d~~El~~e~i~~kl 150 (154)
T 1vkk_A 92 GRVSYPLCFIFSSPVGCKPEQQMMYAGSKNRLVQTA-ELTKVFEIRTTDDLTETWLKEKL 150 (154)
T ss_dssp SCEECCEEEEEECCTTSCHHHHHHHHHHHHHHHHHT-TCCCEEEESSGGGCCHHHHHHHH
T ss_pred CcccccEEEEEECCCCCChhhhhhhHhhHHHHHHhh-CceEEEEECChHhCCHHHHHHHH
Confidence 888999999999999999999999999999999999 89999999999999999999886
No 11
>1ak6_A Destrin; actin depolymerization factor, actin-binding protein; NMR {Homo sapiens} SCOP: d.109.1.2 PDB: 1ak7_A 1q8g_A 1q8x_A 3j0s_M
Probab=100.00 E-value=1.1e-43 Score=254.76 Aligned_cols=138 Identities=34% Similarity=0.683 Sum_probs=125.1
Q ss_pred CCCCCCCCccCHHHHHHHHHHhhCC---------CceEEEEEEeCCceEEEEeec--------CCC-CCCHHHHHhcCCC
Q 032498 1 MANAASGMAVDDDCKLKFLELKAKR---------TYRFIVFKIEEKQKQVVVEKL--------GEP-SDSYENFTASLPA 62 (139)
Q Consensus 1 ~~~~~SGi~i~~e~~~a~~~l~~~~---------~~~~vi~~i~~~~~~i~v~~~--------~~~-~~~~~~~~~~L~~ 62 (139)
+|+|+|||.++++|+++|++++.++ .+|||+|+|++++++|++++. |.+ ..+|++|++.||+
T Consensus 7 ~m~m~SGi~vs~e~~~~f~~~k~~ks~~~~~~~~~~~~iifki~~~~~~Iivee~~~~~~~~~g~~~~~~~~ef~~~L~~ 86 (174)
T 1ak6_A 7 SGNSASGVQVADEVCRIFYDMKVRKCSTPEEIKKRKKAVIFCLSADKKCIIVEEGKEILVGDVGVTITDPFKHFVGMLPE 86 (174)
T ss_dssp CSTTTTCCCCCSHHHHHHHHTSSSCCSSHHHHGGGCCCEECCCSTTSCSCCCCSSCCCCSSSTTTTCCSSSHHHHHTSCS
T ss_pred cccccCCCccCHHHHHHHHHHHcCCcccccccccceeEEEEEECCCCcEEEEeccccccccccCcccCCCHHHHHHhCCC
Confidence 3568999999999999999999884 588999999988778888763 322 5689999999999
Q ss_pred CCceeEEEEeeeecCcCCccceEEEEEEcCCCCCcchhhhhhhhHHHHHhhcCCeeEEEEeCCCCCCCHHHHhhhcC
Q 032498 63 DECRYAVYDFDFVTDENCQKSKIIFIAWSPDTSKVRSKMIYASSKDRFKRELDGIQVELQATDPTEMGLDVMRSRSN 139 (139)
Q Consensus 63 ~~pry~~y~~~~~~~~~~~~~k~vfI~w~P~~a~vk~kMlYassk~~l~~~l~g~~~~i~~~~~~dl~~~~i~~~~~ 139 (139)
++|||++||+.+.+.+| .+++|+||+|||++|++|+||+|||+|++|++.|+|++++||++|++||+++.+.++|.
T Consensus 87 ~~prY~ly~~~~~~~~~-~~~klvfI~W~Pd~a~vk~KMlYAssk~~lk~~l~gi~~~i~atd~~El~~e~i~~kl~ 162 (174)
T 1ak6_A 87 KDCRYALYDASFETKES-RKEELMFFLWAPELAPLKSKMIYASSKDAIKKKFQGIKHECQANGPEDLNRACIAEKLG 162 (174)
T ss_dssp SCCCCEECCCCCCCSSC-SCCCCCEEEECCSSSCHHHHHSHHHHHHHHHHHCTTCSCCEEESSTTTTCHHHHHHHTT
T ss_pred CCcEEEEEeCcccCCCC-ccccEEEEEECCCCCCHHHhhHHHHHHHHHHHHhcCCeEEEEECChhhcCHHHHHHHhc
Confidence 99999999999877665 79999999999999999999999999999999999999999999999999999999874
No 12
>1m4j_A A6 gene product, twinfilin; mixed beta-sheet, PAIR of alpha-helices, structural protein; 1.60A {Mus musculus} SCOP: d.109.1.2
Probab=100.00 E-value=7.6e-43 Score=242.97 Aligned_cols=132 Identities=31% Similarity=0.554 Sum_probs=114.6
Q ss_pred CCCCCCCCccCHHHHHHHHHHhhCCCceEEEEEEeCCceEEEEeecCCCCC----CHHHHHhcC-CCCCceeEEEEeeee
Q 032498 1 MANAASGMAVDDDCKLKFLELKAKRTYRFIVFKIEEKQKQVVVEKLGEPSD----SYENFTASL-PADECRYAVYDFDFV 75 (139)
Q Consensus 1 ~~~~~SGi~i~~e~~~a~~~l~~~~~~~~vi~~i~~~~~~i~v~~~~~~~~----~~~~~~~~L-~~~~pry~~y~~~~~ 75 (139)
|. ++|||.++++|.++|++++.++ +||++|+|+++ +|+++.+|+... +|++|++.| |+++|||++||++++
T Consensus 1 Ms-m~SGi~v~~e~~~~f~~~k~~k-~~~ii~~i~~~--~ivv~~~~~~~~~~~~~~~e~~~~l~~~~~~rY~~~~~~~~ 76 (142)
T 1m4j_A 1 MS-HQTGIQASEDVKEIFARARNGK-YRLLKISIENE--QLVVGSCSPPSDSWEQDYDSFVLPLLEDKQPCYVLFRLDSQ 76 (142)
T ss_dssp -------CCBCHHHHHHHHHHHTTT-CSEEEEEECSS--SEEEEEEECCCSCHHHHHHHHHGGGCCTTCCEEEEEEEEEE
T ss_pred CC-CcCCCeECHHHHHHHHHHhcCC-eEEEEEEEcCC--EEEEEeecCCCccccccHHHHHHhhCCCCCceEEEEEcCcC
Confidence 44 7899999999999999999987 99999999874 799988876543 478999988 699999999999988
Q ss_pred cCcCCccceEEEEEEcCCCCCcchhhhhhhhHHHHHhhcCCeeE--EEEeCCCCCCCHHHHhhhcC
Q 032498 76 TDENCQKSKIIFIAWSPDTSKVRSKMIYASSKDRFKRELDGIQV--ELQATDPTEMGLDVMRSRSN 139 (139)
Q Consensus 76 ~~~~~~~~k~vfI~w~P~~a~vk~kMlYassk~~l~~~l~g~~~--~i~~~~~~dl~~~~i~~~~~ 139 (139)
+.+ ++||+||+|||++||+|+||+|||||++|++.|+|+++ +||+++++||+++.+.+++.
T Consensus 77 ~~~---~~k~vfI~w~Pd~a~vr~KMlYAssk~~lk~~l~g~~~~~~i~atd~~el~~~~i~~~l~ 139 (142)
T 1m4j_A 77 NAQ---GYEWIFIAWSPDHSHVRQKMLYAATRATLKKEFGGGHIKDEVFGTVKEDVSLHGYKKYLL 139 (142)
T ss_dssp ETT---EEEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHCGGGEEEEEEESSHHHHSHHHHHHHHC
T ss_pred CCC---CceEEEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCceeEEEEEeCChHHCCHHHHHHHHh
Confidence 653 58999999999999999999999999999999999887 99999999999999999864
No 13
>2vac_A Twinfilin-2; transferase, actin binding, phosphorylation, cofilin-like, cytoskeleton, actin-binding, protein tyrosine kinase-9; 1.70A {Homo sapiens}
Probab=100.00 E-value=1.4e-41 Score=234.51 Aligned_cols=127 Identities=29% Similarity=0.487 Sum_probs=115.1
Q ss_pred CCCCccCHHHHHHHHHHhhCCCceEEEEEEeCCceEEEEeecCCCCC----CHHHHHhcC-CCCCceeEEEEeeeecCcC
Q 032498 5 ASGMAVDDDCKLKFLELKAKRTYRFIVFKIEEKQKQVVVEKLGEPSD----SYENFTASL-PADECRYAVYDFDFVTDEN 79 (139)
Q Consensus 5 ~SGi~i~~e~~~a~~~l~~~~~~~~vi~~i~~~~~~i~v~~~~~~~~----~~~~~~~~L-~~~~pry~~y~~~~~~~~~ 79 (139)
+|||.++++|.++|++++.++ +||++|+|+++ +|+++++++... +|++|++.| |+++|||++||+++++.+
T Consensus 1 ~SGi~v~~e~~~~f~~~k~~k-~r~ii~~i~~~--~ivv~~~~~~~~~~~~~~~~~~~~l~~~~~prY~v~~~~~~~~~- 76 (134)
T 2vac_A 1 SMGIHATEELKEFFAKARAGS-VRLIKVVIEDE--QLVLGASQEPVGRWDQDYDRAVLPLLDAQQPCYLLYRLDSQNAQ- 76 (134)
T ss_dssp CCSCEECHHHHHHHHHHHHSS-CSEEEEEEETT--EEEEEEEECCCSCHHHHHHHHHGGGCCTTCCEEEEEEEEEEETT-
T ss_pred CCCcEeCHHHHHHHHHHhcCC-eEEEEEEecCC--EEEEEeecCcCcccccCHHHHHHhcCCCCCCEEEEEECCcCCCC-
Confidence 699999999999999999987 99999999874 899998876543 478999998 689999999999988654
Q ss_pred CccceEEEEEEcCCCCCcchhhhhhhhHHHHHhhcCCeeE--EEEeCCCCCCCHHHHhhh
Q 032498 80 CQKSKIIFIAWSPDTSKVRSKMIYASSKDRFKRELDGIQV--ELQATDPTEMGLDVMRSR 137 (139)
Q Consensus 80 ~~~~k~vfI~w~P~~a~vk~kMlYassk~~l~~~l~g~~~--~i~~~~~~dl~~~~i~~~ 137 (139)
++||+||+|||++||+|+||+|||||++|++.|+|+++ ++|+++++||+++.++++
T Consensus 77 --~~k~vfI~w~Pd~a~vr~KMlYAssk~~lk~~l~g~~~~~~i~atd~~el~~~~~~~~ 134 (134)
T 2vac_A 77 --GFEWLFLAWSPDNSPVRLKMLYAATRATVKKEFGGGHIKDELFGTVKDDLSFAGYQKH 134 (134)
T ss_dssp --EEEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHCGGGEEEEEEESSHHHHSHHHHHHC
T ss_pred --CceEEEEEEcCCCCCHHHHhHHHHHHHHHHHHcCCCeeeEEEEeCChHHcCHHHHhcC
Confidence 48999999999999999999999999999999999887 999999999999998753
No 14
>1v6f_A MGMF-beta, GLIA maturation factor, beta; actin binding protein, cytoskeleton, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.109.1.2
Probab=100.00 E-value=6.4e-41 Score=235.46 Aligned_cols=129 Identities=21% Similarity=0.374 Sum_probs=121.4
Q ss_pred CccCHHHHHHHHHHhhCC--CceEEEEEEeCCceEEEEeecCCCCCCHHHHHhcCCCCCceeEEEEeeeecCcCCccceE
Q 032498 8 MAVDDDCKLKFLELKAKR--TYRFIVFKIEEKQKQVVVEKLGEPSDSYENFTASLPADECRYAVYDFDFVTDENCQKSKI 85 (139)
Q Consensus 8 i~i~~e~~~a~~~l~~~~--~~~~vi~~i~~~~~~i~v~~~~~~~~~~~~~~~~L~~~~pry~~y~~~~~~~~~~~~~k~ 85 (139)
++++++|.++|++|+.++ .++||+|+|+.++++|+|+.+++ +.+|++|.+.||+++|||++||+++++.+|+.++++
T Consensus 14 ~~v~~e~~~a~~~lr~~k~~~~~~iifki~~~~~~I~v~~~~~-~~~~~el~~~Lp~~~prY~~~~~~~~~~~~~~~~k~ 92 (151)
T 1v6f_A 14 CDVAEDLVEKLRKFRFRKETHNAAIIMKIDKDERLVVLDEELE-GVSPDELKDELPERQPRFIVYSYKYQHDDGRVSYPL 92 (151)
T ss_dssp CEECHHHHHHHHHHHTCCCSSCEEEEEEECSSSCEEEEEEEEE-SCCHHHHGGGSCSSSCEEEEEECCEECTTSCEECCE
T ss_pred EEECHHHHHHHHHHHhccCCCccEEEEEEcCCCcEEEEEecCC-CCCHHHHHhhCCCCCceEEEEecccccCCCcccccE
Confidence 689999999999999875 58999999999888999998764 568999999999999999999999998888889999
Q ss_pred EEEEEcCCCCCcchhhhhhhhHHHHHhhcCCeeEEEEeCCCCCCCHHHHhhhc
Q 032498 86 IFIAWSPDTSKVRSKMIYASSKDRFKRELDGIQVELQATDPTEMGLDVMRSRS 138 (139)
Q Consensus 86 vfI~w~P~~a~vk~kMlYassk~~l~~~l~g~~~~i~~~~~~dl~~~~i~~~~ 138 (139)
+||+|||++|++|+||+|||+|.+|++.| |++++||++|++||+++.|.+++
T Consensus 93 vfI~w~P~~a~vk~KMlYAssk~~l~~~l-gi~~~iea~d~~El~~~~i~~kl 144 (151)
T 1v6f_A 93 CFIFSSPVGCKPEQQMMYAGSKNKLVQTA-ELTKVFEIRNTEDLTEEWLREKL 144 (151)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHHHHT-TCSEEEEESSGGGCCHHHHHHHH
T ss_pred EEEEECCCCCChHHheehHHHHHHHHHHh-CCeEEEEECChHHCCHHHHHHHH
Confidence 99999999999999999999999999999 89999999999999999999986
No 15
>2w0i_A Twinfilin-2; cytoskeleton, actin-binding, actin binding, cofilin-like, phosphoprotein, phosphorylation, transferase, protein tyros kinase-9; 1.8A {Homo sapiens}
Probab=100.00 E-value=4.7e-41 Score=232.12 Aligned_cols=128 Identities=16% Similarity=0.398 Sum_probs=120.4
Q ss_pred CccCHHHHHHHHHHhhCCCceEEEEEEeCCceEEEEeecCCCCCCHHHHHhcCCCCCceeEEEEeeeecCcCCccceEEE
Q 032498 8 MAVDDDCKLKFLELKAKRTYRFIVFKIEEKQKQVVVEKLGEPSDSYENFTASLPADECRYAVYDFDFVTDENCQKSKIIF 87 (139)
Q Consensus 8 i~i~~e~~~a~~~l~~~~~~~~vi~~i~~~~~~i~v~~~~~~~~~~~~~~~~L~~~~pry~~y~~~~~~~~~~~~~k~vf 87 (139)
++|+++|.++|++|+.++ ++||+|+|+.++++|+|++++ +.+|++|.+.||+++|||++||+.+++.+| .+++++|
T Consensus 2 ~~v~~e~~~a~~~lk~~~-~~~ii~~id~~~~~I~v~~~~--~~~~~el~~~Lp~~~~rY~~y~~~~~~~~~-~~~k~vf 77 (135)
T 2w0i_A 2 MPLQPEAQRALQQLKQKM-VNYIQMKLDLERETIELVHTE--PTDVAQLPSRVPRDAARYHFFLYKHTHEGD-PLESVVF 77 (135)
T ss_dssp CCBCHHHHHHHHHHHTTS-CSEEEEEEETTTTEEEEEECC--CCCGGGGGGGSCSSSCEEEEEEEEEEETTE-EEEEEEE
T ss_pred cccCHHHHHHHHHHHcCC-CcEEEEEEeCCCCEEEEEecC--CCCHHHHHhhCCCCCcEEEEEecccccCCC-CCccEEE
Confidence 679999999999999987 999999999988999999886 679999999999999999999999987655 8999999
Q ss_pred EEEcCC-CCCcchhhhhhhhHHHHHhhcC---Cee--EEEEeCCCCCCCHHHHhhhcC
Q 032498 88 IAWSPD-TSKVRSKMIYASSKDRFKRELD---GIQ--VELQATDPTEMGLDVMRSRSN 139 (139)
Q Consensus 88 I~w~P~-~a~vk~kMlYassk~~l~~~l~---g~~--~~i~~~~~~dl~~~~i~~~~~ 139 (139)
|+|||+ +|++|+||+|||+|.+|++.+. |++ ++|||+|++||+++.|.+++|
T Consensus 78 I~w~P~~~~~vk~kMlYassk~~l~~~l~~~~Gi~v~~~iea~d~~el~~~~i~~kl~ 135 (135)
T 2w0i_A 78 IYSMPGYKCSIKERMLYSSCKSRLLDSVEQDFHLEIAKKIEIGDGAELTAEFLDDEVH 135 (135)
T ss_dssp EEECCGGGSCHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCGGGCCHHHHHHHHC
T ss_pred EEECCCCCCCHHHHhHhHHhHHHHHHHHhhccCCceeEEEEcCChhhcCHHHHHHhhC
Confidence 999999 9999999999999999999998 876 899999999999999999986
No 16
>2d8b_A Twinfilin-1; cell-free protein synthesis, actin-binding protein, developmental regulation, cellular remodeling, cytoskeleton, morphology; NMR {Mus musculus}
Probab=100.00 E-value=2.1e-40 Score=236.09 Aligned_cols=132 Identities=17% Similarity=0.389 Sum_probs=123.4
Q ss_pred CCCCCc--cCHHHHHHHHHHhhCCCceEEEEEEeCCceEEEEeecCCCCCCHHHHHhcCCCCCceeEEEEeeeecCcCCc
Q 032498 4 AASGMA--VDDDCKLKFLELKAKRTYRFIVFKIEEKQKQVVVEKLGEPSDSYENFTASLPADECRYAVYDFDFVTDENCQ 81 (139)
Q Consensus 4 ~~SGi~--i~~e~~~a~~~l~~~~~~~~vi~~i~~~~~~i~v~~~~~~~~~~~~~~~~L~~~~pry~~y~~~~~~~~~~~ 81 (139)
++|||. ++++|+++|++|+.+ .++||+|+|+.++++|+|++++ +.+|++|.+.||+++|||++|||.+++.++ .
T Consensus 21 ~~sgv~~~v~~e~~~a~~~lk~~-~~~~vifkId~~~~~I~v~~~~--~~~~~el~~~Lp~~~pRY~~y~~~~~~~~~-~ 96 (166)
T 2d8b_A 21 TLQGVAFPISRDAFQALEKLSKK-QLNYVQLEIDIKNETIILANTE--NTELRDLPKRIPKDSARYHFFLYKHSHEGD-Y 96 (166)
T ss_dssp CSCCCCCCBCHHHHHHHHHHHTT-CCSCCEEEEETTTTEEEEEECC--CCCSTTHHHHSCSSCCEEEEEEEEEEETTE-E
T ss_pred ccCCcccCcCHHHHHHHHHHHcC-CCcEEEEEEeCCCCEEEEEecC--CCCHHHHHHhCCCCCceEEEEeccccCCCC-c
Confidence 358998 999999999999997 5899999999988999999886 679999999999999999999999987666 6
Q ss_pred cceEEEEEEcCC-CCCcchhhhhhhhHHHHHhhcC---Ce--eEEEEeCCCCCCCHHHHhhhcC
Q 032498 82 KSKIIFIAWSPD-TSKVRSKMIYASSKDRFKRELD---GI--QVELQATDPTEMGLDVMRSRSN 139 (139)
Q Consensus 82 ~~k~vfI~w~P~-~a~vk~kMlYassk~~l~~~l~---g~--~~~i~~~~~~dl~~~~i~~~~~ 139 (139)
+++++||+|||+ +|++|+||+|||+|..|++.|. |+ +++||++|++||+++.|.++++
T Consensus 97 ~~k~vFI~w~P~~~~~ik~KMlYAssk~~l~~~l~~~~Gi~v~~~iea~d~~El~~~~i~~kl~ 160 (166)
T 2d8b_A 97 LESVVFIYSMPGYTCSIRERMLYSSCKSPLLEIVERQLQMDVIRKIEIDNGDELTADFLYDEVH 160 (166)
T ss_dssp EEEEEEEEECCCSSSCHHHHHHHHHTTHHHHHHHTTSSCCCCSEEEEESSSTTCCHHHHHHHHH
T ss_pred cccEEEEEECCCCCCCHHHeeehhhhHHHHHHHHhhccCCceeEEEEeCChHHCCHHHHHHHhC
Confidence 999999999999 9999999999999999999999 87 8999999999999999999874
No 17
>3daw_B Twinfilin-1, protein A6; actin depolymerisation, actin binding proteins, cytoskeleton, structural protein/contractIle protein complex; HET: ATP; 2.55A {Mus musculus} PDB: 2hd7_A
Probab=100.00 E-value=2.4e-39 Score=230.11 Aligned_cols=132 Identities=17% Similarity=0.388 Sum_probs=120.6
Q ss_pred CCCCC--ccCHHHHHHHHHHhhCCCceEEEEEEeCCceEEEEeecCCCCCCHHHHHhcCCCCCceeEEEEeeeecCcCCc
Q 032498 4 AASGM--AVDDDCKLKFLELKAKRTYRFIVFKIEEKQKQVVVEKLGEPSDSYENFTASLPADECRYAVYDFDFVTDENCQ 81 (139)
Q Consensus 4 ~~SGi--~i~~e~~~a~~~l~~~~~~~~vi~~i~~~~~~i~v~~~~~~~~~~~~~~~~L~~~~pry~~y~~~~~~~~~~~ 81 (139)
..+|| +|+++|.++|++|+.++ ++||+|+|+.++++|+|+.+ . +.+|++|.+.||+++|||++|+|++++. |+.
T Consensus 16 ~~~gv~~~v~~e~~~a~~~lk~~~-~~~iifkId~~~e~I~v~~~-~-~~~~~df~~~Lp~~~pRY~vyd~~~~~~-g~~ 91 (164)
T 3daw_B 16 TLQGVAFPISRDAFQALEKLSKKQ-LNYVQLEIDIKNETIILANT-E-NTELRDLPKRIPKDSARYHFFLYKHSHE-GDY 91 (164)
T ss_dssp --CCCCCCBCHHHHHHHHHHHTTS-CSEEEEEEETTTTEEEEEEC-C-CCCGGGSGGGSCSSSCEEEEEEEEEEET-TEE
T ss_pred ccCcceEEECHHHHHHHHHHHcCC-ceEEEEEEeCCCCEEEEEeC-C-CCCHHHHHHhCCccCceEEEEecccccC-CCc
Confidence 45788 79999999999999985 89999999998899999988 3 5899999999999999999999999865 656
Q ss_pred cceEEEEEEcCC-CCCcchhhhhhhhHHHHHhhcC---Ce--eEEEEeCCCCCCCHHHHhhhcC
Q 032498 82 KSKIIFIAWSPD-TSKVRSKMIYASSKDRFKRELD---GI--QVELQATDPTEMGLDVMRSRSN 139 (139)
Q Consensus 82 ~~k~vfI~w~P~-~a~vk~kMlYassk~~l~~~l~---g~--~~~i~~~~~~dl~~~~i~~~~~ 139 (139)
..+++||+|||+ +|++|+||+|||+|++|++.+. |+ .++||++|++||++++|.++++
T Consensus 92 ~~~~ifi~~~P~~~a~ik~kMlYASsK~~l~~~l~~~~Gi~i~k~iea~d~~Elt~e~l~ekl~ 155 (164)
T 3daw_B 92 LESVVFIYSMPGYTCSIRERMLYSSCKSPLLEIVERQLQMDVIRKIEIDNGDELTADFLYDEVH 155 (164)
T ss_dssp EEEEEEEEECCSTTSCHHHHHHHHHTHHHHHHHHHHHHCCCEEEEEEESSSSSCCHHHHHHHHS
T ss_pred cccEEEEEEcCCCCCCHHHHHHHHHhHHHHHHHHhhccCCceeEEEEeCChHHcCHHHHHhHhC
Confidence 788999999999 9999999999999999999997 77 8999999999999999999875
No 18
>1hqz_1 ABP1P, actin-binding protein; cofilin homology domain, NEW YORK SGX researc for structural genomics, NYSGXRC, structural genomics, PSI; 2.10A {Saccharomyces cerevisiae} SCOP: d.109.1.2
Probab=100.00 E-value=1.4e-39 Score=226.15 Aligned_cols=129 Identities=16% Similarity=0.350 Sum_probs=117.1
Q ss_pred CCCCCccC---HHHHHHHHHHhhCC--CceEEEEEEeCCceEEEEeecCCCCCCHHHHHhcCCCCCceeEEEEeeeecCc
Q 032498 4 AASGMAVD---DDCKLKFLELKAKR--TYRFIVFKIEEKQKQVVVEKLGEPSDSYENFTASLPADECRYAVYDFDFVTDE 78 (139)
Q Consensus 4 ~~SGi~i~---~e~~~a~~~l~~~~--~~~~vi~~i~~~~~~i~v~~~~~~~~~~~~~~~~L~~~~pry~~y~~~~~~~~ 78 (139)
+++||.++ ++|+++|++++.++ .++||+|+|++ +++|+++.+|. +|++|.+.||+++|||++||+. .+
T Consensus 2 ~m~~i~l~~~~~e~~~a~~~~~~~~~~~~~~ii~~i~~-~~~i~v~~~g~---~~~el~~~l~~~~~rY~~~~~~---~~ 74 (141)
T 1hqz_1 2 ALEPIDYTTHSREIDAEYLKIVRGSDPDTTWLIISPNA-KKEYEPESTGS---SFHDFLQLFDETKVQYGLARVS---PP 74 (141)
T ss_dssp -CCCCCCSTTHHHHHHHHHHHHHTCCTTCCEEEEEECT-TSCEEEEEEES---CHHHHHTCCCTTSCEEEEEEEC---CT
T ss_pred cccccccCCCCHHHHHHHHHHHhCCCCCceEEEEEEcC-CCEEEEEeecC---CHHHHHhhCCCCceEEEEEEEe---cC
Confidence 35678774 99999999999874 69999999998 56899998874 8999999999999999999998 34
Q ss_pred CCccceEEEEEEcCCCCCcchhhhhhhhHHHHHh-hcCCeeEEEEeCCCCCCCHHHHhhhcC
Q 032498 79 NCQKSKIIFIAWSPDTSKVRSKMIYASSKDRFKR-ELDGIQVELQATDPTEMGLDVMRSRSN 139 (139)
Q Consensus 79 ~~~~~k~vfI~w~P~~a~vk~kMlYassk~~l~~-~l~g~~~~i~~~~~~dl~~~~i~~~~~ 139 (139)
|+.++|++||+|||+++|+|+||+|||+|++|++ .|+|++++|++++++||+++.|.++++
T Consensus 75 ~~~~~k~vfI~w~Pd~~~vk~Kmlyas~k~~l~~~~l~g~~~~i~a~~~~el~~e~i~~kl~ 136 (141)
T 1hqz_1 75 GSDVEKIIIIGWCPDSAPLKTRASFAANFAAVANNLFKGYHVQVTARDEDDLDENELLMKIS 136 (141)
T ss_dssp TCSCCEEEEEEECCTTSCHHHHHHHHHHHHHHHHHTSCSCSEEEEESSGGGGCHHHHHHHHH
T ss_pred CCceeeEEEEEECCCCCChhheEEEeccHHHHHHHhCCceEEEEEECChHHCCHHHHHHHHH
Confidence 6789999999999999999999999999999997 999999999999999999999998863
No 19
>3q2b_A Pfadf1, cofilin/actin-depolymerizing factor homolog 1; actin regulator, actin-binding protein; HET: TAR; 1.60A {Plasmodium falciparum} PDB: 2xf1_A
Probab=100.00 E-value=7.2e-41 Score=228.17 Aligned_cols=117 Identities=26% Similarity=0.565 Sum_probs=106.7
Q ss_pred CCCCCCccCHHHHHHHHHHhhCCCceEEEEEEeCCceEEEEeecCCCCCCHHHHHhcCCCCC---ceeEEEEeeeecCcC
Q 032498 3 NAASGMAVDDDCKLKFLELKAKRTYRFIVFKIEEKQKQVVVEKLGEPSDSYENFTASLPADE---CRYAVYDFDFVTDEN 79 (139)
Q Consensus 3 ~~~SGi~i~~e~~~a~~~l~~~~~~~~vi~~i~~~~~~i~v~~~~~~~~~~~~~~~~L~~~~---pry~~y~~~~~~~~~ 79 (139)
+|+|||.+++||+++|++|+.++++|||+|+|++ ++|+|+.+++ ..+|++|.+.||+++ |||++||+
T Consensus 2 ~m~SGi~vs~e~~~~f~~lk~~k~~~~ii~kI~~--~~ivv~~~~~-~~~~~~f~~~Lp~~~~~~prY~vy~~------- 71 (124)
T 3q2b_A 2 SMISGIRVNDNCVTEFNNMKIRKTCGWIIFVIQN--CEIIIHSKGA-STTLTELVQSIDKNNEIQCAYVVFDA------- 71 (124)
T ss_dssp --CCSCEECHHHHHHHHHHHHHTSSEEEEEEEET--TEEEEEEEEE-CSCHHHHHHHHHHCTTCSEEEEEEEC-------
T ss_pred CCCCCCccCHHHHHHHHHHhcCCCcEEEEEEEcC--CEEEEeccCC-CCCHHHHHHHccccCCCCcEEEEEec-------
Confidence 5789999999999999999998779999999997 4799988875 479999999999999 99999997
Q ss_pred CccceEEEEEEcCCCCCcchhhhhhhhHHHHHhhcCCee-EEEEeCCCCCCCH
Q 032498 80 CQKSKIIFIAWSPDTSKVRSKMIYASSKDRFKRELDGIQ-VELQATDPTEMGL 131 (139)
Q Consensus 80 ~~~~k~vfI~w~P~~a~vk~kMlYassk~~l~~~l~g~~-~~i~~~~~~dl~~ 131 (139)
+++|+||+|||++||+|+||+|||+|++|++.|+|++ .+++++|++||++
T Consensus 72 --~~k~vfI~w~Pd~a~vk~KMlYASsk~~l~~~l~g~~~~~i~a~d~~dlt~ 122 (124)
T 3q2b_A 72 --VSKIHFFMYARESSNSRDRMTYASSKQAILKKIEGVNVLTSVIESAQDVAD 122 (124)
T ss_dssp --SSCEEEEEEECTTSCHHHHHHHHHHHHHHHTTSTTSEECCSCBCSHHHHTT
T ss_pred --CCCEEEEEECCCCCChhHhhhhHHHHHHHHHHhCCCceEEEEecCHHHccc
Confidence 4699999999999999999999999999999999998 5899999999874
No 20
>2l72_A Tgadf, actin depolymerizing factor, putative; ADF/cofilin, actin binding, protein binding; NMR {Toxoplasma gondii}
Probab=100.00 E-value=8.6e-40 Score=226.71 Aligned_cols=117 Identities=44% Similarity=0.803 Sum_probs=107.3
Q ss_pred CCCCCCccCHHHHHHHHHHhhCCCceEEEEEEeCCceEEEEeecCCCCCCHHHHHhcCCCCCceeEEEEeeeecCcCCcc
Q 032498 3 NAASGMAVDDDCKLKFLELKAKRTYRFIVFKIEEKQKQVVVEKLGEPSDSYENFTASLPADECRYAVYDFDFVTDENCQK 82 (139)
Q Consensus 3 ~~~SGi~i~~e~~~a~~~l~~~~~~~~vi~~i~~~~~~i~v~~~~~~~~~~~~~~~~L~~~~pry~~y~~~~~~~~~~~~ 82 (139)
.|+|||+++++|+++|++|+.++.+|||+|+|+. ++|+++.+++ + +|++|++.||+++|||++|| +|
T Consensus 21 ~m~sGi~vs~e~~~af~~lk~~k~~~~ii~~I~~--~eivv~~~g~-~-~~~el~~~Lp~~~prY~~y~------dg--- 87 (139)
T 2l72_A 21 HMASGMGVDENCVARFNELKIRKTVKWIVFKIEN--TKIVVEKDGK-G-NADEFRGALPANDCRFGVYD------CG--- 87 (139)
T ss_dssp -CCTTCEECHHHHHHHHHHTTTTCCCEEEEEEET--TEEEEEEEES-S-HHHHHHHHCCCCSCCEEEEE------CS---
T ss_pred cccCCCCcCHHHHHHHHHHhCCCCeeEEEEEEcC--CEEEEeecCC-C-CHHHHHHhCCCCCcEEEEEc------CC---
Confidence 3689999999999999999998778999999998 5788888876 4 99999999999999999999 23
Q ss_pred ceEEEEEEcCCCCCcchhhhhhhhHHHHHhhcCCeeEE-EEeCCCCCCCHH
Q 032498 83 SKIIFIAWSPDTSKVRSKMIYASSKDRFKRELDGIQVE-LQATDPTEMGLD 132 (139)
Q Consensus 83 ~k~vfI~w~P~~a~vk~kMlYassk~~l~~~l~g~~~~-i~~~~~~dl~~~ 132 (139)
++|+||+|||++||+|+||+|||+|++|++.|+|+++. +++++++||+++
T Consensus 88 ~k~vFI~w~Pd~a~vk~KMlYASsk~~lk~~l~g~~v~~iea~~~~DLte~ 138 (139)
T 2l72_A 88 NKIQFVLWCPDNAPVKPRMTYASSKDALLKKLDGATAVALEAHEMGDLAPL 138 (139)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHHHHHHHCSCCSCEEEESSTTTTSCC
T ss_pred CcEEEEEECCCCCChhHeeehHhhHHHHHHHhCCceEEEEEeCCHHHCccC
Confidence 89999999999999999999999999999999998775 899999999865
No 21
>1x67_A Drebrin-like protein; cell-free protein synthesis, actin-binding protein, SH3P7, MABP1, T-cell lymphocyte signaling and regulation; NMR {Homo sapiens}
Probab=100.00 E-value=3.5e-38 Score=220.36 Aligned_cols=130 Identities=18% Similarity=0.306 Sum_probs=120.0
Q ss_pred CCCCCccC-----HHHHHHHHHHhhCC-CceEEEEEEeCCceEEEEeecCCCCCCHHHHHhcCCCCCceeEEEEeeeecC
Q 032498 4 AASGMAVD-----DDCKLKFLELKAKR-TYRFIVFKIEEKQKQVVVEKLGEPSDSYENFTASLPADECRYAVYDFDFVTD 77 (139)
Q Consensus 4 ~~SGi~i~-----~e~~~a~~~l~~~~-~~~~vi~~i~~~~~~i~v~~~~~~~~~~~~~~~~L~~~~pry~~y~~~~~~~ 77 (139)
++||+.++ ++|+++|++++.++ .+||++|+|++++++|+++.+|+ ++|+||.+.|++++|||++||+..
T Consensus 4 ~~~~m~~~l~~~~~e~~~a~~~v~~~~~~~~wi~~~i~~~~~~l~v~~~G~--~~~~e~~~~L~~~~~~Y~~~r~~~--- 78 (146)
T 1x67_A 4 GSSGMAANLSRNGPALQEAYVRVVTEKSPTDWALFTYEGNSNDIRVAGTGE--GGLEEMVEELNSGKVMYAFCRVKD--- 78 (146)
T ss_dssp SSSSSCCCCCTTHHHHHHHHHHHHCSSSSCSEEEEEESSSSSCEEEEEEES--SCHHHHHHHCCTTSEEEEEEEEEC---
T ss_pred cccceEEEcCCCCHHHHHHHHHHHcCCCCccEEEEEEeCCCcEEEEEeccC--CCHHHHHhhCCCCceEEEEEEEEc---
Confidence 56888777 99999999999987 49999999988767899998874 689999999999999999999984
Q ss_pred cCCccceEEEEEEcCCCCCcchhhhhhhhHHHHHhhcCCeeEEEEeCCCCCCCHHHHhhhc
Q 032498 78 ENCQKSKIIFIAWSPDTSKVRSKMIYASSKDRFKRELDGIQVELQATDPTEMGLDVMRSRS 138 (139)
Q Consensus 78 ~~~~~~k~vfI~w~P~~a~vk~kMlYassk~~l~~~l~g~~~~i~~~~~~dl~~~~i~~~~ 138 (139)
+++.++||+||.||||++|+|+||+||++|++|++.|+|+|++|++++++||+++.|.+|+
T Consensus 79 ~~~~~~K~vfI~W~pd~a~v~~Km~yas~k~~lk~~l~g~~~ei~at~~~el~~~~i~~k~ 139 (146)
T 1x67_A 79 PNSGLPKFVLINWTGEGVNDVRKGACASHVSTMASFLKGAHVTINARAEEDVEPECIMEKV 139 (146)
T ss_dssp SSSCSEEEEEEEEECTTSCHHHHHHHHHHHHHHHHHTTTEEEEECCCSGGGGCHHHHHHHH
T ss_pred CCCCeeeEEEEEECCCCCChhheeeehhhHHHHHHhcCCcEEEEEeCChHHCCHHHHHHHH
Confidence 3567999999999999999999999999999999999999999999999999999999886
No 22
>1t3y_A Coactosin-like protein; beta sheet, protein binding; 1.15A {Homo sapiens} SCOP: d.109.1.2 PDB: 1t2l_A 1t3x_A 1vfq_A 1tmw_A 1wnj_A 1udm_A 1wm4_A
Probab=100.00 E-value=4.5e-34 Score=198.50 Aligned_cols=122 Identities=18% Similarity=0.341 Sum_probs=113.0
Q ss_pred CHHHHHHHHHHhhCC-CceEEEEEEeCCceEEEEeecCCCCCCHHHHHhcCCCCCceeEEEEeeeecCcCCccceEEEEE
Q 032498 11 DDDCKLKFLELKAKR-TYRFIVFKIEEKQKQVVVEKLGEPSDSYENFTASLPADECRYAVYDFDFVTDENCQKSKIIFIA 89 (139)
Q Consensus 11 ~~e~~~a~~~l~~~~-~~~~vi~~i~~~~~~i~v~~~~~~~~~~~~~~~~L~~~~pry~~y~~~~~~~~~~~~~k~vfI~ 89 (139)
+++|.++|++++.++ .++|++|+|+++ +|+|+.+|. +|+||++.|++++|||++||+. ...+++.+.|++||.
T Consensus 6 ~~~~~~a~~~v~~~~~~~~wilf~~~~~--~i~v~~~G~---g~~e~~~~L~~~~~~Ya~~r~~-~~~~~~~~~K~vfI~ 79 (141)
T 1t3y_A 6 KEACRAAYNLVRDDGSAVIWVTFKYDGS--TIVPGEQGA---EYQHFIQQCTDDVRLFAFVRFT-TGDAMSKRSKFALIT 79 (141)
T ss_dssp HHHHHHHHHHHHCTTSSCCEEEEEEETT--EEEEEEEES---SHHHHHHHCCTTCEEEEEEEEE-ECSGGGCEEEEEEEE
T ss_pred hHHHHHHHHHHHcCCCCceEEEEEEcCC--EEEEEecCC---CHHHHHhhCCCCceEEEEEEEE-ecCCCCceeeEEEEE
Confidence 689999999999976 599999999873 499999885 5999999999999999999996 446677899999999
Q ss_pred EcCCCCCcchhhhhhhhHHHHHhhcCCeeEEEEeCCCCCCCHHHHhhhc
Q 032498 90 WSPDTSKVRSKMIYASSKDRFKRELDGIQVELQATDPTEMGLDVMRSRS 138 (139)
Q Consensus 90 w~P~~a~vk~kMlYassk~~l~~~l~g~~~~i~~~~~~dl~~~~i~~~~ 138 (139)
|||+++|++.||+||+++..|++.|.|+|.+|++++++||+++.|.+|+
T Consensus 80 W~pd~~~~~~K~~~as~k~~vk~~l~g~~~~i~a~d~~el~~~~I~~kv 128 (141)
T 1t3y_A 80 WIGENVSGLQRAKTGTDKTLVKEVVQNFAKEFVISDRKELEEDFIKSEL 128 (141)
T ss_dssp EECTTSCHHHHHHHHHHHHHHTTTSCCCSEEEEECSGGGGSHHHHHHHH
T ss_pred ECCCCCCHHHhhhHHHHHHHHHHHhcccEEEEEeCChHHCCHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999886
No 23
>2ff3_A Gelsolin; protein-protein complex, structural protein/contractIle protein complex; HET: ATP; 2.00A {Homo sapiens} SCOP: d.109.1.1 PDB: 2ff6_G*
Probab=59.23 E-value=38 Score=22.81 Aligned_cols=94 Identities=14% Similarity=0.173 Sum_probs=56.2
Q ss_pred HHHHHHhhCCCceEEEEEEeCCceEEEEeecCCCCCCHHHHHhcCCCCCceeEE-EEeeeecCcCCccceEEEEEEcCCC
Q 032498 16 LKFLELKAKRTYRFIVFKIEEKQKQVVVEKLGEPSDSYENFTASLPADECRYAV-YDFDFVTDENCQKSKIIFIAWSPDT 94 (139)
Q Consensus 16 ~a~~~l~~~~~~~~vi~~i~~~~~~i~v~~~~~~~~~~~~~~~~L~~~~pry~~-y~~~~~~~~~~~~~k~vfI~w~P~~ 94 (139)
.+|+.... ....-|.+|++. +.+.+.+. .+ ..+-..+| |++ |.+.. . ..+....+-+|+...
T Consensus 28 ~~f~~~g~--~~gl~VWrIe~~-~~v~vp~~-----~~----G~FysgD~-YIVl~ty~~--~--~g~~~~~IyfW~G~~ 90 (150)
T 2ff3_A 28 PEFLKAGK--EPGLQIWRVEKF-DLVPVPTN-----LY----GDFFTGDA-YVILKTVQL--R--NGNLQYDLHYWLGNE 90 (150)
T ss_dssp HHHHHTTS--SSEEEEEEEETT-EEEECCGG-----GT----TEEETTSE-EEEEEEEEC--T--TSSEEEEEEEEECTT
T ss_pred hhhhccCC--CCCeEEEEEeCC-EEEECChH-----Hc----CeecCCCe-EEEEEEEec--C--CCceEEEEEEEeCCC
Confidence 45665443 355778888863 22322211 11 12333444 665 44431 2 235678899999999
Q ss_pred CCcchhhhhhhhHHHHHhhcCCee---EEEEeCCC
Q 032498 95 SKVRSKMIYASSKDRFKRELDGIQ---VELQATDP 126 (139)
Q Consensus 95 a~vk~kMlYassk~~l~~~l~g~~---~~i~~~~~ 126 (139)
++..++..-|.-...|-+.++|-. .+.|..++
T Consensus 91 ss~de~gaAA~~aveLd~~lgg~~vQ~Re~QG~Ep 125 (150)
T 2ff3_A 91 CSQDESGAAAIFTVQLDDYLNGRAVQHREVQGFES 125 (150)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTTCCEEEEEETTCCC
T ss_pred CCchhHHHHHHHHHHHHHHcCCCceEEEeECCCCC
Confidence 999999887777777888887632 24444443
No 24
>3cip_G Gelsolin; actin, dictyostelium discoideum, actin-associated methyl histidine, ATP-binding, cytoskeleton, nucleotide-BIN phosphoprotein; HET: HIC ATP; 1.60A {Homo sapiens} SCOP: d.109.1.1 PDB: 3ci5_G* 1p8z_G* 1d4x_G* 1nlv_G* 1mdu_A* 1nm1_G* 1nmd_G* 1yag_G* 1yvn_G* 3cjb_G* 3cjc_G* 1esv_S* 1eqy_S* 1c0g_S* 1c0f_S* 1dej_S* 3a5l_S* 3a5m_S* 3a5n_S* 3a5o_S*
Probab=56.63 E-value=38 Score=22.04 Aligned_cols=94 Identities=14% Similarity=0.161 Sum_probs=56.7
Q ss_pred HHHHHHhhCCCceEEEEEEeCCceEEEEeecCCCCCCHHHHHhcCCCCCceeEE-EEeeeecCcCCccceEEEEEEcCCC
Q 032498 16 LKFLELKAKRTYRFIVFKIEEKQKQVVVEKLGEPSDSYENFTASLPADECRYAV-YDFDFVTDENCQKSKIIFIAWSPDT 94 (139)
Q Consensus 16 ~a~~~l~~~~~~~~vi~~i~~~~~~i~v~~~~~~~~~~~~~~~~L~~~~pry~~-y~~~~~~~~~~~~~k~vfI~w~P~~ 94 (139)
.+|+.... ....-|.+|++. +.+.+... .+ ..+-..+| |++ |.+. .. ..+....+-+|+...
T Consensus 9 ~~~~~~g~--~~gl~vWrIe~~-~~~~vp~~-----~~----G~Fy~gd~-YIvl~ty~--~~--~g~~~~~i~~W~G~~ 71 (128)
T 3cip_G 9 PEFLKAGK--EPGLQIWRVEKF-DLVPVPTN-----LY----GDFFTGDA-YVILKTVQ--LR--NGNLQYDLHYWLGNE 71 (128)
T ss_dssp HHHHHTTS--SSEEEEEEEETT-EEEECCGG-----GT----TEEETTCE-EEEEEEEE--CT--TSCEEEEEEEEECTT
T ss_pred hhHHhcCC--CCCeEEEEEeCC-EEEECChH-----Hc----CeecCCCe-EEEEEEEe--cC--CCceEEEEEEEcCCC
Confidence 35665443 355778888864 22322211 11 12333344 665 4443 22 235577899999999
Q ss_pred CCcchhhhhhhhHHHHHhhcCCee---EEEEeCCC
Q 032498 95 SKVRSKMIYASSKDRFKRELDGIQ---VELQATDP 126 (139)
Q Consensus 95 a~vk~kMlYassk~~l~~~l~g~~---~~i~~~~~ 126 (139)
++..++..-|.--..|-+.|+|-. .+.|..++
T Consensus 72 ss~de~g~Aa~~aveLd~~lgg~~vq~R~~QG~E~ 106 (128)
T 3cip_G 72 CSQDESGAAAIFTVQLDDYLNGRAVQHREVQGFES 106 (128)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTTCEEEEEEETTCCC
T ss_pred CCcchHHHHHHHHHHHHHHcCCCceEEEeECCCCC
Confidence 999999888887788888898743 24454444
No 25
>1t44_G Chimera of gelsolin domain 1 and C-terminal domain of thymosin beta-4; structural protein; HET: ATP; 2.00A {Homo sapiens} SCOP: d.109.1.1
Probab=54.48 E-value=45 Score=22.25 Aligned_cols=94 Identities=14% Similarity=0.161 Sum_probs=56.1
Q ss_pred HHHHHHhhCCCceEEEEEEeCCceEEEEeecCCCCCCHHHHHhcCCCCCceeEE-EEeeeecCcCCccceEEEEEEcCCC
Q 032498 16 LKFLELKAKRTYRFIVFKIEEKQKQVVVEKLGEPSDSYENFTASLPADECRYAV-YDFDFVTDENCQKSKIIFIAWSPDT 94 (139)
Q Consensus 16 ~a~~~l~~~~~~~~vi~~i~~~~~~i~v~~~~~~~~~~~~~~~~L~~~~pry~~-y~~~~~~~~~~~~~k~vfI~w~P~~ 94 (139)
.+|+.... ....-|.+|++. +.+.|... .+ ..+-..+| |++ |.+. .. ..+...++-+|+...
T Consensus 6 ~~f~~~g~--~~gl~VWrIe~~-~~~~vp~~-----~~----G~Fy~gd~-YIvl~ty~--~~--~g~~~~~i~~W~G~~ 68 (147)
T 1t44_G 6 PEFLKAGK--EPGLQIWRVEKF-DLVPVPTN-----LY----GDFFTGDA-YVILKTVQ--LR--NGNLQYDLHYWLGNE 68 (147)
T ss_dssp HHHHHTTS--SSEEEEEEEETT-EEEECCGG-----GT----TEEETTCE-EEEEEEEE--CT--TSCEEEEEEEEECTT
T ss_pred hhhhccCC--CCCeEEEEEeCC-EEEECChH-----Hc----CeecCCCe-EEEEEEEe--cC--CCceEEEEEEEeCCC
Confidence 35655433 355778899864 22323211 11 12333344 665 4443 12 235577899999999
Q ss_pred CCcchhhhhhhhHHHHHhhcCCee---EEEEeCCC
Q 032498 95 SKVRSKMIYASSKDRFKRELDGIQ---VELQATDP 126 (139)
Q Consensus 95 a~vk~kMlYassk~~l~~~l~g~~---~~i~~~~~ 126 (139)
++..++..-|.--..|...|+|-. .+.|..++
T Consensus 69 ss~de~g~Aa~~aveLd~~lgg~~vq~R~~QG~Ep 103 (147)
T 1t44_G 69 CSQDESGAAAIFTVQLDDYLNGRAVQHREVQGFES 103 (147)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTTCCEEEEEETTCCC
T ss_pred CChhHHHHHHHHHHHHHHHcCCCceEEEEECCCCC
Confidence 999999888777778888887632 24444443
No 26
>2raq_A Conserved protein MTH889; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 3.11A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: d.58.61.1
Probab=53.24 E-value=39 Score=21.13 Aligned_cols=52 Identities=12% Similarity=0.240 Sum_probs=37.2
Q ss_pred HHHHHHHHHhhCCCceEEEEEEeCCceEEEEeecCCCCCCHHHHHhcCCCCCc
Q 032498 13 DCKLKFLELKAKRTYRFIVFKIEEKQKQVVVEKLGEPSDSYENFTASLPADEC 65 (139)
Q Consensus 13 e~~~a~~~l~~~~~~~~vi~~i~~~~~~i~v~~~~~~~~~~~~~~~~L~~~~p 65 (139)
++..++.++..-.+.+.-+..++.+++.+++.-.|. +-+|+++.+.+..-.+
T Consensus 23 d~A~~l~~~~gV~gVnItv~EvD~eTe~lkitiEG~-~id~d~I~~~IE~~Gg 74 (97)
T 2raq_A 23 EYAKYLSELRGVEGVNITLMEIDKETENIKVTIQGN-DLDFDEITRAIESYGG 74 (97)
T ss_dssp HHHHHHHHSTTCCEEEEEEEEECSSCEEEEEEEECS-SCCHHHHHHHHHHTTC
T ss_pred HHHHHHHhCCCcceEEEEEEEeeccccEEEEEEEec-CCCHHHHHHHHHHcCC
Confidence 455555566555568888889999888777766664 6899998877665444
No 27
>3tu5_B Gelsolin, protein cordon-BLeu, thymosin beta-4; unusual hairpin conformation in the D-loop, structural prote binding protein complex; HET: ATP; 3.00A {Homo sapiens}
Probab=45.57 E-value=89 Score=23.37 Aligned_cols=95 Identities=13% Similarity=0.191 Sum_probs=55.1
Q ss_pred HHHHHHhhCCCceEEEEEEeCCceEEEEeecCCCCCCHHHHHhcCCCCCceeEEEEeeeecCcCCccceEEEEEEcCCCC
Q 032498 16 LKFLELKAKRTYRFIVFKIEEKQKQVVVEKLGEPSDSYENFTASLPADECRYAVYDFDFVTDENCQKSKIIFIAWSPDTS 95 (139)
Q Consensus 16 ~a~~~l~~~~~~~~vi~~i~~~~~~i~v~~~~~~~~~~~~~~~~L~~~~pry~~y~~~~~~~~~~~~~k~vfI~w~P~~a 95 (139)
.+|+...... =.-|-+|++- +++.... ..| ..+-..+ ||++.. ++.... .+..+.+-+|+...+
T Consensus 24 ~~~~~~g~~~--Gl~iWrIe~~--~~~~v~~----~~~----G~Fy~gd-~Yivl~-t~~~~~--g~~~~~i~~W~G~~s 87 (297)
T 3tu5_B 24 PEFLKAGKEP--GLQIWRVEKF--DLVPVPT----NLY----GDFFTGD-AYVILK-TVQLRN--GNLQYDLHYWLGNEC 87 (297)
T ss_dssp HHHHHTTSSS--EEEEEEEETT--EEEECCG----GGT----TEEETTC-EEEEEE-EEECTT--SCEEEEEEEEECTTC
T ss_pred hhHhccCCCC--ceEEEEEcCC--EEEECCH----HHc----CeecCCC-eEEEeE-eEECCC--CceeEEEEEEeCCCC
Confidence 4565544332 3567788763 3332211 111 1223333 476653 222222 245678889999999
Q ss_pred CcchhhhhhhhHHHHHhhcCCe---eEEEEeCCC
Q 032498 96 KVRSKMIYASSKDRFKRELDGI---QVELQATDP 126 (139)
Q Consensus 96 ~vk~kMlYassk~~l~~~l~g~---~~~i~~~~~ 126 (139)
+..++..-|.--..|-..|+|- +.++|..+.
T Consensus 88 s~de~g~aa~~av~Ld~~lgg~~vq~Re~Qg~Es 121 (297)
T 3tu5_B 88 SQDESGAAAIFTVQLDDYLNGRAVQHREVQGFES 121 (297)
T ss_dssp CHHHHHHHHHHHHHHHHHTTTCCEEEEEETTCCC
T ss_pred ChhHHHHHHHHHHHHHHHcCCCceEEEEeCCcCC
Confidence 9999988887777888889873 235555544
No 28
>2ay0_A Bifunctional PUTA protein; ribbon-helix-helix, DNA-binding domain, proline catabo proline utilization A, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.43.1.11
Probab=39.76 E-value=10 Score=21.24 Aligned_cols=24 Identities=17% Similarity=0.368 Sum_probs=18.7
Q ss_pred CCCCCCCCccCHHHHHHHHHHhhC
Q 032498 1 MANAASGMAVDDDCKLKFLELKAK 24 (139)
Q Consensus 1 ~~~~~SGi~i~~e~~~a~~~l~~~ 24 (139)
|++..-+|.+++++.+.++.+...
T Consensus 1 M~~~~~svrL~~el~~rL~~lA~~ 24 (58)
T 2ay0_A 1 MGTTTMGVMLDDATRERIKSAATR 24 (58)
T ss_dssp --CEEEEEEECHHHHHHHHHHHHH
T ss_pred CCCcceEeECCHHHHHHHHHHHHH
Confidence 666777899999999999998653
No 29
>2vik_A Villin 14T; actin-binding protein, capping protein, calcium-binding protein, cytoskeletal protein; NMR {Gallus gallus} SCOP: d.109.1.1 PDB: 2vil_A
Probab=37.84 E-value=81 Score=20.36 Aligned_cols=89 Identities=17% Similarity=0.199 Sum_probs=52.9
Q ss_pred hCCCceEEEEEEeCCceEEEEeecCCCCCCHHHHHhcCCCCCceeEEEEeeeecCcCCccceEEEEEEcCCCCCcchhhh
Q 032498 23 AKRTYRFIVFKIEEKQKQVVVEKLGEPSDSYENFTASLPADECRYAVYDFDFVTDENCQKSKIIFIAWSPDTSKVRSKMI 102 (139)
Q Consensus 23 ~~~~~~~vi~~i~~~~~~i~v~~~~~~~~~~~~~~~~L~~~~pry~~y~~~~~~~~~~~~~k~vfI~w~P~~a~vk~kMl 102 (139)
.+.....-|.+|++. +.+.+.+. . ...+-..+| |++.. .+. . ..+...++-+|+...++..++..
T Consensus 12 d~~~~~l~vWrIe~~-~~~~vp~~-----~----~G~Fy~gd~-YIvl~-t~~-~--~g~~~~~i~~W~G~~ss~de~g~ 76 (126)
T 2vik_A 12 DKTTPGIQIWRIENM-EMVPVPTK-----S----YGNFYEGDC-YVLLS-TRK-T--GSGFSYNIHYWLGKNSSQDEQGA 76 (126)
T ss_dssp CSSCCEEEEEECGGG-SCCEECTT-----T----TTCCCSSSC-EEEEE-EEE-C--SSSEEEEEEEEECTTSCHHHHHH
T ss_pred CcCCCCEEEEEEeCC-EEEECChh-----h----cCeeCCCCe-EEEEE-ecc-C--CCceeEEEEEEeCCCCCchhHHH
Confidence 333456677777753 22222211 1 122444455 66543 232 1 23557889999999999999988
Q ss_pred hhhhHHHHHhhcCCe---eEEEEeCCC
Q 032498 103 YASSKDRFKRELDGI---QVELQATDP 126 (139)
Q Consensus 103 Yassk~~l~~~l~g~---~~~i~~~~~ 126 (139)
-|.--..|-+.++|- ..+.|..++
T Consensus 77 Aa~~aveLd~~lgg~~vq~R~~QG~E~ 103 (126)
T 2vik_A 77 AAIYTTQMDEYLGSVAVQHREVQGHES 103 (126)
T ss_dssp HHHHHHHHHHHTTSCSCEEEEETTTSH
T ss_pred HHHHHHHHHHHcCCCccEEEEECCCCC
Confidence 877777888888773 335554443
No 30
>2p2e_A Putative Fe-S biosynthesis protein; hypothetical protein, beta-barrel, 10399L structural genomics, protein structure initiative, PSI-2; 2.48A {Lactobacillus salivarius} SCOP: b.124.1.1
Probab=35.68 E-value=43 Score=21.70 Aligned_cols=28 Identities=14% Similarity=0.331 Sum_probs=22.4
Q ss_pred CCccCHHHHHHHHHHhhCCCceEEEEEEe
Q 032498 7 GMAVDDDCKLKFLELKAKRTYRFIVFKIE 35 (139)
Q Consensus 7 Gi~i~~e~~~a~~~l~~~~~~~~vi~~i~ 35 (139)
.|.+++.+.+.++++...++ +.+.|++.
T Consensus 4 ~ItlT~~A~~~l~~~l~~~~-~~l~Lr~~ 31 (128)
T 2p2e_A 4 KITVTDDAAKKLQRYTDDSN-AVLLLDFD 31 (128)
T ss_dssp EEEECHHHHHHHHHHHTCTT-EEEEEEEC
T ss_pred EEEECHHHHHHHHHHHhcCC-ceEEEEEe
Confidence 48999999999999877653 35677877
No 31
>2x3d_A SSO6206; unknown function; 2.70A {Sulfolobus solfataricus}
Probab=34.88 E-value=43 Score=20.88 Aligned_cols=53 Identities=13% Similarity=0.237 Sum_probs=34.4
Q ss_pred HHHHHHHHHhhCCCceEEEEEEeCCceEEEEeecCCCCCCHHHHHhcCCCCCce
Q 032498 13 DCKLKFLELKAKRTYRFIVFKIEEKQKQVVVEKLGEPSDSYENFTASLPADECR 66 (139)
Q Consensus 13 e~~~a~~~l~~~~~~~~vi~~i~~~~~~i~v~~~~~~~~~~~~~~~~L~~~~pr 66 (139)
++..++.++..-.+.+.-+..++.+++.+++.-.|. +-+|+++.+.+..-.+.
T Consensus 22 d~A~~l~~~~gV~gVnItv~EvD~eTe~lkItIEG~-~idfd~I~~~IE~~Gg~ 74 (96)
T 2x3d_A 22 DLAERISKLDGVEGVNISVTDMDVETMGLMIIIEGT-SLNFDDIRKMLEEEGCA 74 (96)
T ss_dssp HHHHHHHTSTTEEEEEEEEEEECSSEEEEEEEEEES-SCCHHHHHHHHHHTTCE
T ss_pred HHHHHHHhCCCcceEEEEEEEeeccccEEEEEEEec-CCCHHHHHHHHHHcCCe
Confidence 334444444433357777888898888777665564 68999988877654443
No 32
>2ygw_A Malonyl-COA decarboxylase, mitochondrial; lyase; 2.80A {Homo sapiens}
Probab=32.84 E-value=25 Score=28.19 Aligned_cols=35 Identities=3% Similarity=0.031 Sum_probs=27.6
Q ss_pred CCCHHHHHhcCCCCCceeEEEEeeeecCcCCccceEEEEEE
Q 032498 50 SDSYENFTASLPADECRYAVYDFDFVTDENCQKSKIIFIAW 90 (139)
Q Consensus 50 ~~~~~~~~~~L~~~~pry~~y~~~~~~~~~~~~~k~vfI~w 90 (139)
=.+|+|+..-|.++.-||++|....+ .+++|||.-
T Consensus 191 I~~W~DLkrRL~pdRRCfaFFHp~mP------~EPLIfVeV 225 (460)
T 2ygw_A 191 VKNWMDMKRRVGPYRRCYFFSHCSTP------GEPLVVLHV 225 (460)
T ss_dssp CCSHHHHHHHTSTTEEEEEEEETTBT------TCCSEEEEE
T ss_pred cCCHHHHHHhcCCCCeEEEecCCCCC------CCCeEEEee
Confidence 35899999999889999999976543 457777765
No 33
>3bpd_A Uncharacterized protein; heptamer, Mg+2 ION, PSI-2, NYSGXRC, structural genom protein structure initiative; 2.80A {Archaeoglobus fulgidus dsm 4304} SCOP: d.58.61.1
Probab=32.51 E-value=24 Score=22.18 Aligned_cols=53 Identities=17% Similarity=0.219 Sum_probs=34.5
Q ss_pred HHHHHHHHHhhCCCceEEEEEEeCCceEEEEeecCCCCCCHHHHHhcCCCCCce
Q 032498 13 DCKLKFLELKAKRTYRFIVFKIEEKQKQVVVEKLGEPSDSYENFTASLPADECR 66 (139)
Q Consensus 13 e~~~a~~~l~~~~~~~~vi~~i~~~~~~i~v~~~~~~~~~~~~~~~~L~~~~pr 66 (139)
++..++.++..-.+.+..+..++.+++.+++.-.|. +-+|+++.+.+..-.+.
T Consensus 23 dlA~~l~~~~gV~gVnItV~EvD~eTe~lkItIEG~-dIdfd~I~~~IE~~Ggv 75 (100)
T 3bpd_A 23 VFALKLSELENVDGVNIHLSEIDQATENIKITILGN-NLDYEQIKGVIEDMGGV 75 (100)
T ss_dssp HHHHHHHTSTTEEEEEEEEEEECSSEEEEEEEEEEE-EECHHHHHHHHHTTTCE
T ss_pred HHHHHHHhCCCcceEEEEEEEeeccccEEEEEEEec-CCCHHHHHHHHHHcCCe
Confidence 344444444443457777888998887777665553 67899988877655443
No 34
>1ncq_A Coat protein VP1; HRV, pleconaril, icosahedral virus; HET: W11; 2.50A {Human rhinovirus 14} SCOP: b.121.4.1 PDB: 1d3i_1* 1hrv_1* 1hri_1* 1na1_A* 1k5m_A* 1r08_1* 1r09_1* 1rvf_1 1vrh_1* 2hwb_1* 2hwc_1* 2r04_1* 2r06_1* 2r07_1* 2rm2_1* 2rr1_1* 2rs1_1* 2rs3_1* 2rs5_1* 4rhv_1 ...
Probab=31.58 E-value=64 Score=24.10 Aligned_cols=15 Identities=7% Similarity=0.191 Sum_probs=12.4
Q ss_pred EEEEEEcCCCCCcch
Q 032498 85 IIFIAWSPDTSKVRS 99 (139)
Q Consensus 85 ~vfI~w~P~~a~vk~ 99 (139)
.+-|+|+|.+||+..
T Consensus 147 ~~qvmyvPpGaP~p~ 161 (289)
T 1ncq_A 147 VVQAMYVPPGAPNPK 161 (289)
T ss_dssp EEEEEEECTTSCCCC
T ss_pred EEEEEEeCCCCCCCc
Confidence 456999999999874
No 35
>3vbh_A EV71, genome polyprotein, capsid protein VP1; hand-foot-and-mouth disease, enterovirus uncoating, P factor, adaptor-sensor; HET: SPH; 2.30A {Human enterovirus 71} PDB: 3vbf_A* 3vbo_A 3vbs_A* 4aed_A* 3vbr_A 3vbu_A
Probab=30.91 E-value=68 Score=24.11 Aligned_cols=44 Identities=9% Similarity=0.187 Sum_probs=23.8
Q ss_pred HHHHhcCCCCCceeEEEEeeeec----CcCCccceEEEEEEcCCCCCcch
Q 032498 54 ENFTASLPADECRYAVYDFDFVT----DENCQKSKIIFIAWSPDTSKVRS 99 (139)
Q Consensus 54 ~~~~~~L~~~~pry~~y~~~~~~----~~~~~~~k~vfI~w~P~~a~vk~ 99 (139)
.++...|.- --|.-+|++++- ..+....-.+-|+|+|.+||+..
T Consensus 117 ~QlRrKLe~--FTY~RfDlEvT~V~t~~~~~~~~~~~QvmyvPpGaP~p~ 164 (297)
T 3vbh_A 117 AQMRRKVEL--FTYMRFDAEFTFVACTPTGEVVPQLLQYMFVPPGAPKPD 164 (297)
T ss_dssp HHHHHHHTT--EEEEEEEEEEEEEEECTTSCCCCCEEEEEEECTTSCCCC
T ss_pred HHHHhhhce--eEEEeeeeEEEEEEecCCCCCCceEEEEEEcCCCCCCCC
Confidence 344444522 345555555541 11111233456999999999764
No 36
>1fmd_1 Foot-and-mouth disease virus (subunit VP1); icosahedral virus; 3.50A {Foot-and-mouth disease virus} SCOP: b.121.4.1 PDB: 1qgc_1 1qgc_5
Probab=30.48 E-value=44 Score=23.82 Aligned_cols=29 Identities=17% Similarity=0.431 Sum_probs=20.0
Q ss_pred ceeEEEEeeeecCcCCccceEEEEEEcCCCCCcch
Q 032498 65 CRYAVYDFDFVTDENCQKSKIIFIAWSPDTSKVRS 99 (139)
Q Consensus 65 pry~~y~~~~~~~~~~~~~k~vfI~w~P~~a~vk~ 99 (139)
.-|..+|++.+-.. . .-|+|+|.+||+..
T Consensus 69 FTY~rfDlEvtvv~-----~-~qvmyvPpGaP~p~ 97 (208)
T 1fmd_1 69 ATYYFSDLEIAVTH-----T-GKLTWVPNGAPVSA 97 (208)
T ss_dssp EEEEEEEEEEEEEE-----E-EEEEEECTTCCGGG
T ss_pred cEEEeccEEEEEEE-----e-eEEEEECCCCCchh
Confidence 45666666665211 1 58999999999884
No 37
>1tme_1 Theiler'S murine encephalomyelitis virus (subunit VP1); icosahedral virus; 2.80A {Theiler} SCOP: b.121.4.1 PDB: 1tmf_1
Probab=30.26 E-value=56 Score=24.28 Aligned_cols=33 Identities=12% Similarity=0.308 Sum_probs=19.8
Q ss_pred eeEEEEeeeecCcCCccceEEEEEEcCCCCCcc
Q 032498 66 RYAVYDFDFVTDENCQKSKIIFIAWSPDTSKVR 98 (139)
Q Consensus 66 ry~~y~~~~~~~~~~~~~k~vfI~w~P~~a~vk 98 (139)
-|..+|++.+-.......-.+-|+|+|.+||+.
T Consensus 121 TY~rfDLEvTvv~~~~~~~~~qvmyvPpGaP~p 153 (274)
T 1tme_1 121 TYYKCDLEVTVSALGTDTVASVLRWAPTGAPAD 153 (274)
T ss_dssp EEEEEEEEEEEEECSCSCCEEEEEEECTTCCCC
T ss_pred eEecccEEEEEEEcCCCCceEEEEEcCCCCCCC
Confidence 566666665421111112235799999999987
No 38
>2mev_1 Mengo virus coat protein (subunit VP1); cardio picornavirus coat protein, icosahedral virus; 3.00A {Mengo virus} SCOP: b.121.4.1 PDB: 1mec_1
Probab=26.89 E-value=57 Score=24.29 Aligned_cols=33 Identities=12% Similarity=0.388 Sum_probs=18.8
Q ss_pred eeEEEEeeeecCcCCccceEEEEEEcCCCCCcc
Q 032498 66 RYAVYDFDFVTDENCQKSKIIFIAWSPDTSKVR 98 (139)
Q Consensus 66 ry~~y~~~~~~~~~~~~~k~vfI~w~P~~a~vk 98 (139)
-|..+|++.+-.......--.-|+|+|.+||+.
T Consensus 121 TY~rfDLEvtvv~~~~~~~~~~vmyvPpGaP~~ 153 (277)
T 2mev_1 121 VYYKCDLEVTLSPHTSGAHGLLVRWCPTGTPTK 153 (277)
T ss_dssp SEEEEEEEEEEEESCSSCCCEEEEEECTTSCCC
T ss_pred eEecccEEEEEEEcCCCCcceEEEECCCCCCCC
Confidence 566666666421111011113599999999986
No 39
>1z7s_1 Human coxsackievirus A21; picornavirus, capsid protein, viral protein, icosahedral virus; HET: MYR G; 3.20A {Human coxsackievirus A21} PDB: 1z7z_1*
Probab=26.50 E-value=87 Score=23.49 Aligned_cols=15 Identities=20% Similarity=0.246 Sum_probs=12.4
Q ss_pred EEEEEEcCCCCCcch
Q 032498 85 IIFIAWSPDTSKVRS 99 (139)
Q Consensus 85 ~vfI~w~P~~a~vk~ 99 (139)
.+-|+|+|.+||+..
T Consensus 149 ~~qvmyvPpGAP~p~ 163 (298)
T 1z7s_1 149 VYQIMYIPPGAPRPS 163 (298)
T ss_dssp EEEEEEECTTSCCCS
T ss_pred EEEEEEcCCCCCCCC
Confidence 346999999999875
No 40
>4goj_C Protein UNC-119 homolog A; small G protein ARL, GDI-like solubilizing factors, cilia, S protein; HET: GNP; 2.10A {Homo sapiens} PDB: 4gok_G*
Probab=26.36 E-value=1e+02 Score=22.40 Aligned_cols=49 Identities=24% Similarity=0.353 Sum_probs=21.6
Q ss_pred CceEEEEEEe-CCceEEEEeecCCC-CCCHHHHHhcCCCCCceeEEEEeee
Q 032498 26 TYRFIVFKIE-EKQKQVVVEKLGEP-SDSYENFTASLPADECRYAVYDFDF 74 (139)
Q Consensus 26 ~~~~vi~~i~-~~~~~i~v~~~~~~-~~~~~~~~~~L~~~~pry~~y~~~~ 74 (139)
++.+.-|+|- .++.++..+-..++ ..........++++..||+-|.|..
T Consensus 85 ~I~F~~F~IRD~etg~vlFei~kp~~~~~~~~~~~~~d~~agR~VrY~F~p 135 (240)
T 4goj_C 85 KIDFVRFKIRDMDSGTVLFEIKKPPVSERLPINRRDLDPNAGRFVRYQFTP 135 (240)
T ss_dssp CCEEEEEEEEETTTCCEEEEEEC------------------CCEEEEEECG
T ss_pred CcceeEEEEecCCCCeEEEEecCCCccccccccccccCcccCceEEEecCH
Confidence 3778888885 35555554433221 1122233455777888999998864
No 41
>3gqq_A Protein UNC-119 homolog A; human retinal protein 4, HRG4, U119A_human, HR3066A, NESG, structural genomics, PSI-2, protein structure initiative; 1.95A {Homo sapiens} PDB: 3rbq_A*
Probab=24.36 E-value=1.4e+02 Score=20.99 Aligned_cols=49 Identities=22% Similarity=0.331 Sum_probs=24.6
Q ss_pred CceEEEEEEe-CCceEEEEeecCCCC-CCHHHHHhcCCCCCceeEEEEeee
Q 032498 26 TYRFIVFKIE-EKQKQVVVEKLGEPS-DSYENFTASLPADECRYAVYDFDF 74 (139)
Q Consensus 26 ~~~~vi~~i~-~~~~~i~v~~~~~~~-~~~~~~~~~L~~~~pry~~y~~~~ 74 (139)
++.+.-|+|- .+++++..+-.-++. ....+....++++..|++-|.+..
T Consensus 40 ~I~F~~F~IRD~etg~vLFei~k~~~~~~~~~~~~~~~~~~~R~vrYqF~~ 90 (195)
T 3gqq_A 40 KIDFVRFKIRDMDSGTVLFEIKKPPVSERLPINRRDLDPNAGRFVRYQFTP 90 (195)
T ss_dssp CCEEEEEEEEETTTCCEEEEEECCC--------------CTTCEEEEECCG
T ss_pred eeEEEEEEEeccCCCCEEEEecCCCCccccccccccCCccccceEEEEeCH
Confidence 3678888884 466666655433221 122233556778899999999874
No 42
>1qqp_1 FMDV, protein (genome polyprotein); heparan sulphate, virus-receptor interactions/protein carbohydrate interactions; HET: IDX SGN IDS; 1.90A {Foot-and-mouth disease virus} SCOP: b.121.4.1 PDB: 1bbt_1 1fod_1
Probab=23.78 E-value=36 Score=24.40 Aligned_cols=29 Identities=14% Similarity=0.403 Sum_probs=19.3
Q ss_pred ceeEEEEeeeecCcCCccceEEEEEEcCCCCCcch
Q 032498 65 CRYAVYDFDFVTDENCQKSKIIFIAWSPDTSKVRS 99 (139)
Q Consensus 65 pry~~y~~~~~~~~~~~~~k~vfI~w~P~~a~vk~ 99 (139)
.-|..+|++.+-.. . .=++|+|.+||+..
T Consensus 69 fTY~rfDlEvTvv~-----~-~qvmwvPpGAP~p~ 97 (213)
T 1qqp_1 69 STYYFSDLEIAVKH-----E-GDLTWVPNGAPEKA 97 (213)
T ss_dssp EEEEEEEEEEEEEE-----E-SCEEEECTTCCGGG
T ss_pred cEEEeeeEEEEEEE-----c-cEEEEECCCCCCcc
Confidence 35666666654211 1 36899999999876
No 43
>2gpe_A Bifunctional protein PUTA; ribbon-helix-helix, DNA-binding domain, proline catabo proline utilization A, DNA binding protein; 1.90A {Escherichia coli} PDB: 2rbf_A* 2jxg_A 2jxh_A 2jxi_A*
Probab=23.52 E-value=19 Score=19.18 Aligned_cols=24 Identities=17% Similarity=0.372 Sum_probs=18.1
Q ss_pred CCCCCCCCccCHHHHHHHHHHhhC
Q 032498 1 MANAASGMAVDDDCKLKFLELKAK 24 (139)
Q Consensus 1 ~~~~~SGi~i~~e~~~a~~~l~~~ 24 (139)
|++..-+|.+++++.+.++.+...
T Consensus 1 M~~~~~sirl~~~l~~~l~~lA~~ 24 (52)
T 2gpe_A 1 MGTTTMGVKLDDATRERIKSAATR 24 (52)
T ss_dssp -CEEEEEEEEEHHHHHHHHHHHHH
T ss_pred CCcceEEEECCHHHHHHHHHHHHH
Confidence 555566789999999999998653
No 44
>1mvf_D MAZE protein, PEMI-like protein 1; plasmid addiction, camel antibody, addiction antidote, immun; 1.65A {Escherichia coli} SCOP: b.129.1.1 PDB: 1ub4_C
Probab=22.59 E-value=54 Score=19.15 Aligned_cols=52 Identities=4% Similarity=0.182 Sum_probs=20.9
Q ss_pred CCCccCHHHHHHHHHHhhCCCceEEEEEEeCCceEEEEeecCCCC-CCHHHHHhcCCCC
Q 032498 6 SGMAVDDDCKLKFLELKAKRTYRFIVFKIEEKQKQVVVEKLGEPS-DSYENFTASLPAD 63 (139)
Q Consensus 6 SGi~i~~e~~~a~~~l~~~~~~~~vi~~i~~~~~~i~v~~~~~~~-~~~~~~~~~L~~~ 63 (139)
-+|.++.++.+++ .++.+. .|.+.+.+ ..|++....... .+++++++.+.++
T Consensus 13 ~~v~iPk~~~~~l-gl~~gd---~v~i~~~~--~~iii~p~~~~~~~~l~~ll~~~~~~ 65 (82)
T 1mvf_D 13 PAVRIPATLMQAL-NLNIDD---EVKIDLVD--GKLIIEPVRKEPVFTLAELVNDITPE 65 (82)
T ss_dssp EEEECCHHHHHHT-TCCTTC---BEEEEEET--TEEEEEEC------------------
T ss_pred cEEEECHHHHHHc-CCCCCC---EEEEEEEC--CEEEEEECCCCCcCCHHHHHhhcccc
Confidence 4577888888765 334443 35455554 357776553211 4788888888764
No 45
>2fh1_A Gelsolin; calcium, contractIle protein; 1.55A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1p8x_A 2fh2_A 2fh3_A 2fh4_A 1h1v_G* 1nph_A
Probab=22.34 E-value=2.5e+02 Score=21.00 Aligned_cols=74 Identities=18% Similarity=0.345 Sum_probs=45.7
Q ss_pred eEEEEEEeCCceEEEEeecCCCCCCHHHHHhcCCCCCceeEE-EEeeeecCcCCccceEEEEEEcCCCCCcchhhhhhhh
Q 032498 28 RFIVFKIEEKQKQVVVEKLGEPSDSYENFTASLPADECRYAV-YDFDFVTDENCQKSKIIFIAWSPDTSKVRSKMIYASS 106 (139)
Q Consensus 28 ~~vi~~i~~~~~~i~v~~~~~~~~~~~~~~~~L~~~~pry~~-y~~~~~~~~~~~~~k~vfI~w~P~~a~vk~kMlYass 106 (139)
..-|.+|.+. +.+.+... . ...+-+.+| |++ |.|.. .| +....+-+|++..|+..++..-|.-
T Consensus 8 ~~~vwrIe~~-~~~~v~~~-----~----~G~Fy~gD~-YIvl~ty~~---~~--~~~~~i~~W~G~~ss~de~~~aa~~ 71 (344)
T 2fh1_A 8 QKQIWRIEGS-NKVPVDPA-----T----YGQFYGGDS-YIILYNYRH---GG--RQGQIIYNWQGAQSTQDEVAASAIL 71 (344)
T ss_dssp EEEEEEEETT-EEEECCGG-----G----TTEEETTSE-EEEEEEEEE---TT--EEEEEEEEEECTTCCHHHHHHHHHH
T ss_pred CEEEEEEcCC-eEEECCHH-----H----cCeecCCCe-EEEEEEeec---CC--CceEEEEEEecCCCCHhHHHHHHHH
Confidence 5667788864 23333211 1 122444455 665 55432 12 3577889999999999998776666
Q ss_pred HHHHHhhcCCe
Q 032498 107 KDRFKRELDGI 117 (139)
Q Consensus 107 k~~l~~~l~g~ 117 (139)
...|...++|-
T Consensus 72 ~~~ld~~lgg~ 82 (344)
T 2fh1_A 72 TAQLDEELGGT 82 (344)
T ss_dssp HHHHHHHTTSC
T ss_pred HHHHHHHhCCC
Confidence 66677788763
No 46
>1bev_1 Bovine enterovirus coat proteins VP1 to VP4; bovine enterovirus VG-5-27, picornavirus, icosahedral virus; HET: MYR; 3.00A {Bovine enterovirus} SCOP: b.121.4.1
Probab=21.26 E-value=1.3e+02 Score=22.32 Aligned_cols=15 Identities=20% Similarity=0.282 Sum_probs=12.3
Q ss_pred EEEEEEcCCCCCcch
Q 032498 85 IIFIAWSPDTSKVRS 99 (139)
Q Consensus 85 ~vfI~w~P~~a~vk~ 99 (139)
.+-|+|+|.+||+..
T Consensus 140 ~~qvmyvPpGaP~p~ 154 (281)
T 1bev_1 140 TYQVMYVPPGAPVPS 154 (281)
T ss_dssp EEEEEEECTTSCCCC
T ss_pred EEEEEEcCCCCCCCc
Confidence 346999999999764
Done!