BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032499
(139 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8H0Y1|OP24B_ARATH Outer envelope pore protein 24B, chloroplastic OS=Arabidopsis
thaliana GN=OEP24B PE=1 SV=1
Length = 213
Score = 221 bits (563), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 100/138 (72%), Positives = 123/138 (89%), Gaps = 2/138 (1%)
Query: 1 MKASLKGRYETDKDRGVAAATVAFNAGDVKLRASLTDATVVNGPSLNGLALAVEKPGFFI 60
MKAS+KG+Y+TDK G+ ++AFNAGD+KLRA++TDAT+V GP+L GLALAVEKPG FI
Sbjct: 3 MKASIKGKYDTDKTSGIG--SLAFNAGDIKLRATMTDATLVAGPTLTGLALAVEKPGSFI 60
Query: 61 VDYNVPKKDFRFQFMNSVRVADKPLNLTYIHGRGDNRTILEGTLVFDSANKVSANHVLGS 120
V+YNVPKKD RFQFMN+VR+A+KPLNLTYIH R DNRTI++G+LV DSANK+SANH++G+
Sbjct: 61 VEYNVPKKDVRFQFMNTVRIAEKPLNLTYIHSRADNRTIVDGSLVIDSANKLSANHMVGT 120
Query: 121 GNCKLKYTYVHGGLTTFE 138
NCK+KYTY HGGL TFE
Sbjct: 121 NNCKIKYTYAHGGLATFE 138
>sp|O49929|OEP24_PEA Outer envelope pore protein 24, chloroplastic OS=Pisum sativum
GN=OEP24 PE=1 SV=1
Length = 213
Score = 214 bits (544), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 103/138 (74%), Positives = 117/138 (84%), Gaps = 1/138 (0%)
Query: 1 MKASLKGRYETDKDRGVAAATVAFNAGDVKLRASLTDATVVNGPSLNGLALAVEKPGFFI 60
MKA+LKG+Y+ D + AATVAFNAGDVKLRAS+TDAT N PSL GL LAVEKPG F
Sbjct: 1 MKAALKGKYDLDHNSS-GAATVAFNAGDVKLRASITDATFKNSPSLTGLVLAVEKPGSFS 59
Query: 61 VDYNVPKKDFRFQFMNSVRVADKPLNLTYIHGRGDNRTILEGTLVFDSANKVSANHVLGS 120
VDYNVPKKDFRFQFMN+VRVA+KPLNL YIH +GDNRTIL+GTLV+D +NKVSAN+ + S
Sbjct: 60 VDYNVPKKDFRFQFMNTVRVAEKPLNLAYIHSKGDNRTILDGTLVWDPSNKVSANYAVES 119
Query: 121 GNCKLKYTYVHGGLTTFE 138
GNCKLKY+Y H GLTT E
Sbjct: 120 GNCKLKYSYNHKGLTTIE 137
>sp|Q1H5C9|OP24A_ARATH Outer envelope pore protein 24A, chloroplastic OS=Arabidopsis
thaliana GN=OEP24A PE=1 SV=1
Length = 213
Score = 211 bits (537), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 96/138 (69%), Positives = 119/138 (86%), Gaps = 2/138 (1%)
Query: 1 MKASLKGRYETDKDRGVAAATVAFNAGDVKLRASLTDATVVNGPSLNGLALAVEKPGFFI 60
MKAS KG+++ DK VA+ T FNAG+ KLRA++TDA+ V GPS NGL+LAVEKPGFFI
Sbjct: 2 MKASFKGKFDVDKSGSVASLT--FNAGNAKLRATMTDASFVAGPSFNGLSLAVEKPGFFI 59
Query: 61 VDYNVPKKDFRFQFMNSVRVADKPLNLTYIHGRGDNRTILEGTLVFDSANKVSANHVLGS 120
+DYNVPKKD RFQFMN++R+A+KPLNLTYIH RGDNRTI++G+ V D ANK+SAN+++G+
Sbjct: 60 IDYNVPKKDVRFQFMNTIRIAEKPLNLTYIHMRGDNRTIVDGSFVIDPANKLSANYMVGT 119
Query: 121 GNCKLKYTYVHGGLTTFE 138
NCKLKYTYVHGG+ TFE
Sbjct: 120 KNCKLKYTYVHGGIATFE 137
>sp|B8ANR3|OEP24_ORYSI Outer envelope pore protein 24, chloroplastic OS=Oryza sativa
subsp. indica GN=OEP24 PE=3 SV=1
Length = 224
Score = 135 bits (339), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 70/148 (47%), Positives = 91/148 (61%), Gaps = 10/148 (6%)
Query: 1 MKASLKGRYETDKDRGVAAATVAFNAGDVKLRASLTDATVVNGPSLNGLALAVEKPGFFI 60
MKA++KGRYE DK A +A D++ +AS TDA GPSL GL L +EKPG F+
Sbjct: 1 MKATVKGRYEGDKATAAATLAFTPSAADLRFKASATDAAFARGPSLEGLTLTLEKPGSFL 60
Query: 61 VDYNVPKKDFRFQFMNSVRVADKPLNLTYIH--------GRGDNRTILEGTLVFDSANKV 112
+D KD RFQFMNS + D+ ++LTY H + RT L+G+L FD ANK+
Sbjct: 61 LDLKPHSKDVRFQFMNSALLLDRRVSLTYTHSTTLSPGPAKPPARTALDGSLTFDPANKL 120
Query: 113 SANHVLGSGNCKLKYTYVHGG--LTTFE 138
S +H LGS C++KY+Y HG LTT E
Sbjct: 121 SLSHTLGSSGCRVKYSYAHGQDRLTTIE 148
>sp|Q75IQ4|OEP24_ORYSJ Outer envelope pore protein 24, chloroplastic OS=Oryza sativa
subsp. japonica GN=OEP24 PE=2 SV=1
Length = 224
Score = 134 bits (336), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 70/148 (47%), Positives = 91/148 (61%), Gaps = 10/148 (6%)
Query: 1 MKASLKGRYETDKDRGVAAATVAFNAGDVKLRASLTDATVVNGPSLNGLALAVEKPGFFI 60
MKA++KGRYE DK A +A D++ +AS TDA GPSL GL L +EKPG F+
Sbjct: 1 MKATVKGRYEGDKATAAATLAFTPSAADLRFKASATDAAFARGPSLEGLILTLEKPGSFL 60
Query: 61 VDYNVPKKDFRFQFMNSVRVADKPLNLTYIH--------GRGDNRTILEGTLVFDSANKV 112
+D KD RFQFMNS + D+ ++LTY H + RT L+G+L FD ANK+
Sbjct: 61 LDLKPHSKDVRFQFMNSALLLDRRVSLTYTHSTTLSPGPAKLPARTALDGSLTFDPANKL 120
Query: 113 SANHVLGSGNCKLKYTYVHGG--LTTFE 138
S +H LGS C++KY+Y HG LTT E
Sbjct: 121 SLSHTLGSSGCRVKYSYAHGQDRLTTIE 148
>sp|Q9SA76|PPR64_ARATH Pentatricopeptide repeat-containing protein At1g30610,
chloroplastic OS=Arabidopsis thaliana GN=EMB2279 PE=2
SV=1
Length = 1006
Score = 33.9 bits (76), Expect = 0.26, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 7/72 (9%)
Query: 71 RFQFMNSVRVADKPLNLTY---IHGRGDNRTILEGTLVFDSANKVSANHVLGSGNCKLKY 127
+FQ RVA+KPL +TY I D+ I +FD KV + +++ + N LK
Sbjct: 745 QFQLKKICRVANKPLVVTYTGLIQACVDSGNIKNAAYIFDQMKKVCSPNLV-TCNIMLK- 802
Query: 128 TYVHGGLTTFEQ 139
Y+ GGL FE+
Sbjct: 803 AYLQGGL--FEE 812
>sp|P22630|AMY1_AERHY Alpha-amylase OS=Aeromonas hydrophila PE=3 SV=1
Length = 464
Score = 31.6 bits (70), Expect = 1.7, Method: Composition-based stats.
Identities = 33/130 (25%), Positives = 50/130 (38%), Gaps = 35/130 (26%)
Query: 26 AGDVKLRASLTDATVVNG-------PSLNGLALAVEKPGFFIVDYNVPKKD-FRFQFMNS 77
A D L ASL A G P G AL + F + +++P D FR+Q +N
Sbjct: 269 AYDFPLFASLRGALGYGGSMNQLADPGAYGQALPGNRAVTFAITHDIPTNDGFRYQILNQ 328
Query: 78 VRVADKPLNLTYIHGRGDN------------------------RTILEGTLVFDSANKVS 113
D+ L Y+ GR R+ L+G + F +A +
Sbjct: 329 T---DEKLAYAYLLGRDGGSPLVYSDHGETQDKDGLRWQDYYLRSDLKGMIRFHNAVQGQ 385
Query: 114 ANHVLGSGNC 123
++GSG+C
Sbjct: 386 PMQLIGSGDC 395
>sp|A1RY04|NFI_THEPD Endonuclease V OS=Thermofilum pendens (strain Hrk 5) GN=nfi PE=3
SV=1
Length = 232
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 20/29 (68%)
Query: 50 ALAVEKPGFFIVDYNVPKKDFRFQFMNSV 78
A+ VE P F +VDY+V + + RF ++ ++
Sbjct: 55 AVVVEYPSFSVVDYSVTRTEVRFPYVPTL 83
>sp|Q54VA9|F116_DICDI Protein DENND6 homolog OS=Dictyostelium discoideum GN=DDB_G0280481
PE=3 SV=1
Length = 715
Score = 29.6 bits (65), Expect = 5.9, Method: Composition-based stats.
Identities = 17/71 (23%), Positives = 37/71 (52%), Gaps = 12/71 (16%)
Query: 60 IVDYNVPKKDFRFQFMNSVRVADKPLNLTYIHGRGDNRTILEGTLVFDSANKVSANHVLG 119
++DY+ P+ +F+ ++ NL ++ D+ + L+G +++ + K+ LG
Sbjct: 110 VLDYSFPQVNFK---------EEESTNLCFL-SFPDSNSHLQGDIIY--SFKLKETSSLG 157
Query: 120 SGNCKLKYTYV 130
+G C +Y YV
Sbjct: 158 NGQCNFQYGYV 168
>sp|A4JA23|RSMG_BURVG Ribosomal RNA small subunit methyltransferase G OS=Burkholderia
vietnamiensis (strain G4 / LMG 22486) GN=rsmG PE=3 SV=1
Length = 228
Score = 29.6 bits (65), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 5/61 (8%)
Query: 36 TDATVVN---GPSLNGLALAVEKPGFFIVDYNVPKKDFRFQFMNSVRVADKPLNLTYIHG 92
TDA V++ G L G+ LA+ +PG+ + ++ +K FQ +R K NL+ + G
Sbjct: 81 TDARVLDVGSGGGLPGIVLAIVQPGWQVTLNDIVQKKSAFQ--TQMRAELKLTNLSVVTG 138
Query: 93 R 93
R
Sbjct: 139 R 139
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.135 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,966,231
Number of Sequences: 539616
Number of extensions: 1932630
Number of successful extensions: 3349
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 3336
Number of HSP's gapped (non-prelim): 12
length of query: 139
length of database: 191,569,459
effective HSP length: 104
effective length of query: 35
effective length of database: 135,449,395
effective search space: 4740728825
effective search space used: 4740728825
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)