Query 032499
Match_columns 139
No_of_seqs 27 out of 29
Neff 2.6
Searched_HMMs 29240
Date Tue Mar 26 00:33:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032499.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032499hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3f95_A Beta-glucosidase; beta- 53.6 26 0.0009 27.2 5.6 62 60-126 49-116 (193)
2 3emn_X Voltage-dependent anion 40.1 1.4E+02 0.0049 23.9 13.1 31 78-109 194-225 (295)
3 3erx_A Pseudoazurin; copper pr 33.7 66 0.0022 22.6 4.6 17 20-37 21-37 (123)
4 1iwl_A P20, outer-membrane lip 28.0 47 0.0016 23.1 3.0 19 50-68 38-56 (182)
5 2w7q_A Outer-membrane lipoprot 27.0 48 0.0016 23.8 3.0 19 50-68 58-76 (204)
6 3kmv_A Alpha-L-arabinofuranosi 26.5 91 0.0031 23.5 4.6 30 34-63 38-73 (157)
7 3ef4_A Pseudoazurin, blue copp 24.7 1E+02 0.0035 21.8 4.4 17 20-37 22-38 (124)
8 1epa_A Epididymal retinoic aci 24.5 1.6E+02 0.0056 19.7 5.6 55 18-76 37-91 (164)
9 4hci_A Cupredoxin 1; structura 24.0 1.5E+02 0.005 19.0 5.1 18 20-37 28-46 (100)
10 3rgh_A Filamin-A; cell adhesio 20.4 52 0.0018 21.9 1.9 24 39-64 11-34 (100)
No 1
>3f95_A Beta-glucosidase; beta-sandwich, hydrolase; 1.80A {Pseudoalteromonas SP}
Probab=53.56 E-value=26 Score=27.17 Aligned_cols=62 Identities=13% Similarity=0.153 Sum_probs=42.0
Q ss_pred EEeecCCCCCeeEEeeeeeeecceeeeeEEeeecCCceeEEeeeEEEe------cCCceeEEEEecCCceeEE
Q 032499 60 IVDYNVPKKDFRFQFMNSVRVADKPLNLTYIHGRGDNRTILEGTLVFD------SANKVSANHVLGSGNCKLK 126 (139)
Q Consensus 60 ~iDy~vp~~d~RFQFmn~~~v~~K~lnlTY~H~~~~nrT~lDgtl~~D------~aNK~s~~y~f~s~~cklK 126 (139)
-+|+++.+..-||.|-.+... .+.+.+.-+ -| +.-++|.|+|| |...|++...=+..+|.-.
T Consensus 49 ~vD~~~QEDAr~~~w~G~~~a---~~~~~~~~~-~D-s~y~~~aL~fd~rvd~ap~~~v~L~m~Cg~~~C~~~ 116 (193)
T 3f95_A 49 SVNLSYQEDGRGFNWRAQAAL---SLSYLEPTP-LD-SKFSTGYLELKMRIDKAPEQGANLQVMCSESNCLRD 116 (193)
T ss_dssp EECSSSTTCEEEEEESSSEEE---EEEEEEEEE-CC-GGGTTCEEEEEEEEEECCTTCEEEEEEECSSCEEEE
T ss_pred eechhhccceeEeEEcCCCce---EEEEecCCC-cC-ChhhCceEEEEEEeecCCCCcEEEEEecCCCCccce
Confidence 389999998999999764320 222322222 34 66666688888 9999999888776558543
No 2
>3emn_X Voltage-dependent anion-selective channel protein; VDAC1, eukaryotic membrane protein, beta barrel, AP ION transport, mitochondrion, outer membrane; HET: MC3; 2.30A {Mus musculus} PDB: 2k4t_A 2jk4_A
Probab=40.13 E-value=1.4e+02 Score=23.92 Aligned_cols=31 Identities=10% Similarity=0.096 Sum_probs=20.3
Q ss_pred eeecc-eeeeeEEeeecCCceeEEeeeEEEecC
Q 032499 78 VRVAD-KPLNLTYIHGRGDNRTILEGTLVFDSA 109 (139)
Q Consensus 78 ~~v~~-K~lnlTY~H~~~~nrT~lDgtl~~D~a 109 (139)
+++.+ .-+..+|.|.-.+ ++.+=..+.++..
T Consensus 194 ~~l~~~~~~~aSy~qkvs~-~~~~g~e~~~~~~ 225 (295)
T 3emn_X 194 TNVNDGTEFGGSIYQKVNK-KLETAVNLAWTAG 225 (295)
T ss_dssp EEEETTTEEEEEEEEECSS-SEEEEEEEEEETT
T ss_pred EEECCCCeEEEEEEEECCC-ceEEEEEEEEecc
Confidence 34444 7899999998766 4555555666543
No 3
>3erx_A Pseudoazurin; copper protein, high-resolution, E transport, metal-binding, transport; 1.25A {Paracoccus pantotrophus} SCOP: b.6.1.1 PDB: 1adw_A
Probab=33.66 E-value=66 Score=22.60 Aligned_cols=17 Identities=35% Similarity=0.319 Sum_probs=10.7
Q ss_pred EEEEEecCceEEeeeeec
Q 032499 20 ATVAFNAGDVKLRASLTD 37 (139)
Q Consensus 20 atv~~~aGDlkLrAs~TD 37 (139)
+.|++.+|| .++-..+|
T Consensus 21 ~~i~V~~Gd-tV~f~~~~ 37 (123)
T 3erx_A 21 AFVRAEPGD-VINFVPTD 37 (123)
T ss_dssp SEEEECTTE-EEEEEESS
T ss_pred CEEEECCCC-EEEEEECC
Confidence 467788887 34445555
No 4
>1iwl_A P20, outer-membrane lipoproteins carrier protein; unclosed beta barrel, protein transport; 1.65A {Escherichia coli} SCOP: b.125.1.1 PDB: 1ua8_A 3ksn_A 2zpd_A 2zpc_A
Probab=27.98 E-value=47 Score=23.05 Aligned_cols=19 Identities=26% Similarity=0.483 Sum_probs=16.6
Q ss_pred EEEeecCceEEEeecCCCC
Q 032499 50 ALAVEKPGFFIVDYNVPKK 68 (139)
Q Consensus 50 ~l~vEKPGsF~iDy~vp~~ 68 (139)
.|.+.|||-|.++|.-|..
T Consensus 38 ~~~~~rP~~~r~~~~~P~~ 56 (182)
T 1iwl_A 38 DLWVKRPNLFNWHMTQPDE 56 (182)
T ss_dssp EEEEETTTEEEEEECSSSC
T ss_pred EEEEeCCCeEEEEECCCCc
Confidence 6789999999999998865
No 5
>2w7q_A Outer-membrane lipoprotein carrier protein; periplasmic chaperone, lipoprotein transport, transport, CHA protein transport; 1.88A {Pseudomonas aeruginosa}
Probab=27.00 E-value=48 Score=23.83 Aligned_cols=19 Identities=26% Similarity=0.688 Sum_probs=16.2
Q ss_pred EEEeecCceEEEeecCCCC
Q 032499 50 ALAVEKPGFFIVDYNVPKK 68 (139)
Q Consensus 50 ~l~vEKPGsF~iDy~vp~~ 68 (139)
.|.+.|||-|.++|.-|..
T Consensus 58 ~~~~~rP~k~rw~~~~P~~ 76 (204)
T 2w7q_A 58 QLSLKRPGLFRWHTDAPNE 76 (204)
T ss_dssp EEEEETTTEEEEEECSSSC
T ss_pred EEEEeCCCEEEEEecCCce
Confidence 5789999999999988854
No 6
>3kmv_A Alpha-L-arabinofuranosidase B; protein:carboydrate interactions, carbohydrate-binding modul trefoil fold, CBM42, sugar binding protein; 1.80A {Clostridium thermocellum}
Probab=26.54 E-value=91 Score=23.46 Aligned_cols=30 Identities=17% Similarity=0.325 Sum_probs=21.9
Q ss_pred eeeceeeeeCCcccce---EEEee---cCceEEEee
Q 032499 34 SLTDATVVNGPSLNGL---ALAVE---KPGFFIVDY 63 (139)
Q Consensus 34 s~TDatfv~gpSL~Gl---~l~vE---KPGsF~iDy 63 (139)
.-.|+||.--|.|.+- ..++| .||.||--+
T Consensus 38 ~~~datF~vvpGLa~~~~g~VSfES~n~Pg~yLRh~ 73 (157)
T 3kmv_A 38 PEMDSQWELVPGLANSGDGYVSIQSVNYPGYYLRHS 73 (157)
T ss_dssp SGGGGCEEEEECSSCCSTTEEEEEESSSTTEEEEEE
T ss_pred CccCceEEEeCCcCCCCCCEEEEEECCCCCcEEEEe
Confidence 3569999877777653 46666 999999643
No 7
>3ef4_A Pseudoazurin, blue copper protein; electron transfer, electron transport; HET: PO4; 1.18A {Hyphomicrobium denitrificans} SCOP: b.6.1.0
Probab=24.73 E-value=1e+02 Score=21.82 Aligned_cols=17 Identities=35% Similarity=0.434 Sum_probs=11.3
Q ss_pred EEEEEecCceEEeeeeec
Q 032499 20 ATVAFNAGDVKLRASLTD 37 (139)
Q Consensus 20 atv~~~aGDlkLrAs~TD 37 (139)
+.|++.+||- ++-..+|
T Consensus 22 ~~i~V~~GDT-V~f~n~~ 38 (124)
T 3ef4_A 22 GFVKVEAGDT-VKFVPTD 38 (124)
T ss_dssp SEEEECTTCE-EEEECSS
T ss_pred CEEEECCCCE-EEEEECC
Confidence 5788888883 4444555
No 8
>1epa_A Epididymal retinoic acid-binding protein; 2.10A {Rattus norvegicus} SCOP: b.60.1.1 PDB: 1epb_A*
Probab=24.47 E-value=1.6e+02 Score=19.73 Aligned_cols=55 Identities=13% Similarity=0.004 Sum_probs=31.1
Q ss_pred eEEEEEEecCceEEeeeeeceeeeeCCcccceEEEeecCceEEEeecCCCCCeeEEeee
Q 032499 18 AAATVAFNAGDVKLRASLTDATVVNGPSLNGLALAVEKPGFFIVDYNVPKKDFRFQFMN 76 (139)
Q Consensus 18 a~atv~~~aGDlkLrAs~TDatfv~gpSL~Gl~l~vEKPGsF~iDy~vp~~d~RFQFmn 76 (139)
..++++..-|.+++..++...- .+...+++.--.|.||.|.++.. .....++|+.
T Consensus 37 ~~~~y~~~~g~i~v~~~~~~~~--~c~~~~~~~~~~~~~g~~~~~~~--~~~~~v~v~~ 91 (164)
T 1epa_A 37 GAMVVELKENLLALTTTYYSED--HCVLEKVTATEGDGPAKFQVTRL--SGKKEVVVEA 91 (164)
T ss_dssp EEEEEEEETTEEEEEEEEEETT--EEEEEEEEEEECSSTTEEEEEET--TEEEEEEEEE
T ss_pred EEEEEEeCCCcEEEEEEEecCC--CeeEEEEEEEEcCCCcEEEEecC--CCeEEEEEEe
Confidence 4577774467888888775431 12223333333488999998664 2333444443
No 9
>4hci_A Cupredoxin 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.63A {Bacillus anthracis} PDB: 4hcg_A 4hcf_A
Probab=23.98 E-value=1.5e+02 Score=19.00 Aligned_cols=18 Identities=6% Similarity=0.073 Sum_probs=12.0
Q ss_pred EEEEEecCc-eEEeeeeec
Q 032499 20 ATVAFNAGD-VKLRASLTD 37 (139)
Q Consensus 20 atv~~~aGD-lkLrAs~TD 37 (139)
++|++++|| |+|...=.|
T Consensus 28 ~~i~v~~G~tV~~~~~n~d 46 (100)
T 4hci_A 28 NVITIPINESTTLLLKNKG 46 (100)
T ss_dssp SEEEECTTSCEEEEEEECS
T ss_pred CEEEECCCCEEEEEEEcCC
Confidence 467888887 777654444
No 10
>3rgh_A Filamin-A; cell adhesion, cytoskeleton-complex, disease mutation, immun like, cytoskeleton, actin-binding, cell junction, shape; HET: CME; 2.44A {Homo sapiens} SCOP: b.1.18.0
Probab=20.35 E-value=52 Score=21.90 Aligned_cols=24 Identities=29% Similarity=0.465 Sum_probs=19.3
Q ss_pred eeeeCCcccceEEEeecCceEEEeec
Q 032499 39 TVVNGPSLNGLALAVEKPGFFIVDYN 64 (139)
Q Consensus 39 tfv~gpSL~Gl~l~vEKPGsF~iDy~ 64 (139)
+.+.||.|+.. -+-+|.+|.||=.
T Consensus 11 v~~~GpGL~~~--~vg~~~~F~V~~~ 34 (100)
T 3rgh_A 11 VKCSGPGLERA--TAGEVGQFQVDCS 34 (100)
T ss_dssp CEEESGGGTEE--ETTSCEEEEEECT
T ss_pred CEEECCCcCCe--EcCCcEEEEEEEC
Confidence 56689999973 5789999999863
Done!