Query 032499
Match_columns 139
No_of_seqs 27 out of 29
Neff 2.6
Searched_HMMs 13730
Date Tue Mar 26 00:34:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032499.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/032499hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1olma2 b.132.1.1 (A:275-393) 41.2 11 0.00081 24.7 3.3 35 40-75 10-45 (119)
2 d1rk8a_ d.58.7.1 (A:) RNA-bind 38.8 6.3 0.00046 23.9 1.5 35 60-94 53-88 (88)
3 d1fjca_ d.58.7.1 (A:) Nucleoli 37.9 8.6 0.00063 23.5 2.1 38 60-97 57-95 (96)
4 d1cb8a2 b.24.1.1 (A:600-700) C 36.7 9.6 0.0007 24.8 2.3 19 46-64 33-51 (101)
5 d2o14a1 b.18.1.32 (A:14-159) H 35.6 58 0.0042 22.1 6.5 71 19-102 66-136 (146)
6 d1g2ra_ d.192.1.1 (A:) Hypothe 34.2 7.8 0.00057 25.2 1.5 16 101-116 28-43 (94)
7 d1x5sa1 d.58.7.1 (A:8-97) Cold 32.4 8 0.00058 23.1 1.2 38 61-98 52-90 (90)
8 d1iwla_ b.125.1.1 (A:) Outer-m 31.1 18 0.0013 23.1 3.0 19 50-68 38-56 (182)
9 d2cpza1 d.58.7.1 (A:383-484) C 29.9 8.3 0.0006 24.0 1.0 37 61-97 65-102 (102)
10 d1tdja2 d.58.18.2 (A:336-423) 29.8 5.3 0.00039 25.9 0.0 37 54-106 12-51 (88)
11 d1gkub2 c.37.1.16 (B:251-498) 26.6 17 0.0012 25.3 2.3 21 47-67 81-103 (248)
12 d1uula_ c.47.1.10 (A:) Trypare 24.6 17 0.0012 25.5 2.0 26 53-81 122-147 (194)
13 d3dxoa1 d.17.4.19 (A:1-117) Un 24.0 71 0.0052 19.2 7.8 51 68-118 62-114 (117)
14 d2diba1 b.1.18.10 (A:8-122) Fi 23.3 5.6 0.00041 25.5 -0.8 23 41-63 19-41 (115)
15 d1h3ga1 b.1.18.2 (A:3-95) Cycl 22.5 32 0.0023 22.3 3.0 12 21-32 34-45 (93)
16 d2gc9a1 b.60.1.6 (A:1-178) P-c 21.6 1.4E+02 0.01 21.7 6.9 53 60-117 35-92 (178)
17 d2cuaa_ b.6.1.2 (A:) Cytochrom 21.1 76 0.0056 20.6 4.8 44 21-64 48-104 (122)
No 1
>d1olma2 b.132.1.1 (A:275-393) Supernatant protein factor (SPF), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=41.20 E-value=11 Score=24.73 Aligned_cols=35 Identities=17% Similarity=0.343 Sum_probs=25.8
Q ss_pred eeeCCcccceEEEeecCceEE-EeecCCCCCeeEEee
Q 032499 40 VVNGPSLNGLALAVEKPGFFI-VDYNVPKKDFRFQFM 75 (139)
Q Consensus 40 fv~gpSL~Gl~l~vEKPGsF~-iDy~vp~~d~RFQFm 75 (139)
...|.++. |.+-|+.||+.| -++.....|+.|-..
T Consensus 10 V~~G~~~~-v~~~v~~~Gs~l~WeF~t~~~DI~Fgv~ 45 (119)
T d1olma2 10 ISRGSSHQ-VEYEILFPGCVLRWQFMSDGADVGFGIF 45 (119)
T ss_dssp ECTTCEEE-EEEEECSTTCEEEEEEEESSSCEEEEEE
T ss_pred ECCCCEEE-EEEEEeCCCcEEEEEEEeCCccEEEEEE
Confidence 44566666 888899999976 566667788888764
No 2
>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=38.81 E-value=6.3 Score=23.85 Aligned_cols=35 Identities=14% Similarity=0.422 Sum_probs=27.2
Q ss_pred EEeecCCCCCee-EEeeeeeeecceeeeeEEeeecC
Q 032499 60 IVDYNVPKKDFR-FQFMNSVRVADKPLNLTYIHGRG 94 (139)
Q Consensus 60 ~iDy~vp~~d~R-FQFmn~~~v~~K~lnlTY~H~~~ 94 (139)
.|+|.-+....+ .+-||...+.+++|.+.|.+++|
T Consensus 53 fV~f~~~~~A~~A~~~lng~~l~g~~l~V~~a~~kG 88 (88)
T d1rk8a_ 53 LVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKG 88 (88)
T ss_dssp EEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC
T ss_pred eEEECCHHHHHHHHHHcCCCEECCEEEEEEEecCCC
Confidence 477776654444 45688899999999999999876
No 3
>d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus auratus) [TaxId: 10036]}
Probab=37.94 E-value=8.6 Score=23.48 Aligned_cols=38 Identities=11% Similarity=0.339 Sum_probs=26.3
Q ss_pred EEeecCCCCCee-EEeeeeeeecceeeeeEEeeecCCce
Q 032499 60 IVDYNVPKKDFR-FQFMNSVRVADKPLNLTYIHGRGDNR 97 (139)
Q Consensus 60 ~iDy~vp~~d~R-FQFmn~~~v~~K~lnlTY~H~~~~nr 97 (139)
.|+|.-+...-+ .+=||...+.+++|++.|..+++.+|
T Consensus 57 fV~f~~~~~A~~A~~~l~~~~~~gr~i~V~~a~~k~~~r 95 (96)
T d1fjca_ 57 YIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKGGTR 95 (96)
T ss_dssp EEEESSHHHHHHHHHHTTEEEETTEEEEEEECSSSCCCC
T ss_pred EEEeCCHHHHHHHHHHcCCCEECCEEEEEEEeCCCCCCC
Confidence 467765443322 23368889999999999999877654
No 4
>d1cb8a2 b.24.1.1 (A:600-700) Chondroitinase AC {Pedobacter heparinus (Flavobacterium heparinum) [TaxId: 984]}
Probab=36.65 E-value=9.6 Score=24.84 Aligned_cols=19 Identities=16% Similarity=0.429 Sum_probs=17.1
Q ss_pred ccceEEEeecCceEEEeec
Q 032499 46 LNGLALAVEKPGFFIVDYN 64 (139)
Q Consensus 46 L~Gl~l~vEKPGsF~iDy~ 64 (139)
+.||++.+.+|+++||..+
T Consensus 33 ~~gl~v~~d~p~~vmi~~~ 51 (101)
T d1cb8a2 33 VAGIEIETDKPCAVLIKHI 51 (101)
T ss_dssp ETTEEEEESSCEEEEEECT
T ss_pred cCCeEEEcCCceEEEEEEC
Confidence 6789999999999999765
No 5
>d2o14a1 b.18.1.32 (A:14-159) Hypothetical protein YxiM {Bacillus subtilis [TaxId: 1423]}
Probab=35.56 E-value=58 Score=22.06 Aligned_cols=71 Identities=18% Similarity=0.247 Sum_probs=44.6
Q ss_pred EEEEEEecCceEEeeeeeceeeeeCCcccceEEEeecCceEEEeecCCCCCeeEEeeeeeeecceeeeeEEeeecCCcee
Q 032499 19 AATVAFNAGDVKLRASLTDATVVNGPSLNGLALAVEKPGFFIVDYNVPKKDFRFQFMNSVRVADKPLNLTYIHGRGDNRT 98 (139)
Q Consensus 19 ~atv~~~aGDlkLrAs~TDatfv~gpSL~Gl~l~vEKPGsF~iDy~vp~~d~RFQFmn~~~v~~K~lnlTY~H~~~~nrT 98 (139)
+=.+.++=|.-+++..+-|+... ..-.+|+.-.--++|.|. +-.| .+.|-+-+|+|.++|+++...+
T Consensus 66 ~f~v~vPnG~Y~Vtv~~Gd~~~~-~~~~eg~~~~~~~~g~~~----------~~~~--~V~VtDG~L~l~ft~~~~G~~~ 132 (146)
T d2o14a1 66 TFNVDLPNGLYEVKVTLGNTARA-SVAAEGVFQVINMTGDGA----------EDTF--QIPVTDGQLNLLVTEGKAGTAF 132 (146)
T ss_dssp CEEEECCSEEEEEEEEESSCSEE-EEEETTEEEEEEEESTTC----------EEEE--EEEECSSEEEEEEEESSTTSCC
T ss_pred eEEEECCCCeEEEEEEEecCCCc-cEEEeeEEeccccCCccE----------EEEE--EEEEECCeEEEEEecCCCCCcc
Confidence 45666777777777777774432 233455544444455443 2234 4789999999999999876666
Q ss_pred EEee
Q 032499 99 ILEG 102 (139)
Q Consensus 99 ~lDg 102 (139)
.|..
T Consensus 133 ~in~ 136 (146)
T d2o14a1 133 TLSA 136 (146)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6653
No 6
>d1g2ra_ d.192.1.1 (A:) Hypothetical cytosolic protein SP0554 {Streptococcus pneumoniae [TaxId: 1313]}
Probab=34.17 E-value=7.8 Score=25.24 Aligned_cols=16 Identities=25% Similarity=0.476 Sum_probs=13.9
Q ss_pred eeeEEEecCCceeEEE
Q 032499 101 EGTLVFDSANKVSANH 116 (139)
Q Consensus 101 Dgtl~~D~aNK~s~~y 116 (139)
||.+++|+.+|+.++-
T Consensus 28 dg~v~~D~~~k~~GRG 43 (94)
T d1g2ra_ 28 EGQVFIDPTGKANGRG 43 (94)
T ss_dssp TSCEEEETTSCCCSEE
T ss_pred CCcEEEcCCCCCCCCE
Confidence 7999999999998763
No 7
>d1x5sa1 d.58.7.1 (A:8-97) Cold-inducible RNA-binding protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=32.38 E-value=8 Score=23.12 Aligned_cols=38 Identities=18% Similarity=0.239 Sum_probs=30.8
Q ss_pred EeecCCCCCee-EEeeeeeeecceeeeeEEeeecCCcee
Q 032499 61 VDYNVPKKDFR-FQFMNSVRVADKPLNLTYIHGRGDNRT 98 (139)
Q Consensus 61 iDy~vp~~d~R-FQFmn~~~v~~K~lnlTY~H~~~~nrT 98 (139)
|+|.=+...-+ .+=||...+.+++|.+.+...+.+||+
T Consensus 52 V~f~~~~~a~~Ai~~l~~~~~~g~~l~V~~a~~~~~~rs 90 (90)
T d1x5sa1 52 VTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGKSSDNRS 90 (90)
T ss_dssp EECSSHHHHHHHHHHHTTCCTTSCCCEEEEEECCCCCCC
T ss_pred EEECCHHHHHHHHHHcCCCEECCEEEEEEEcCCCCCCCC
Confidence 78876665555 567889999999999999999888874
No 8
>d1iwla_ b.125.1.1 (A:) Outer-membrane lipoproteins carrier protein LolA {Escherichia coli [TaxId: 562]}
Probab=31.15 E-value=18 Score=23.05 Aligned_cols=19 Identities=26% Similarity=0.483 Sum_probs=17.0
Q ss_pred EEEeecCceEEEeecCCCC
Q 032499 50 ALAVEKPGFFIVDYNVPKK 68 (139)
Q Consensus 50 ~l~vEKPGsF~iDy~vp~~ 68 (139)
.|.+.|||-|.++|.-|.+
T Consensus 38 ~~~~~kP~~~r~~y~~P~~ 56 (182)
T d1iwla_ 38 DLWVKRPNLFNWHMTQPDE 56 (182)
T ss_dssp EEEEETTTEEEEEECSSSC
T ss_pred EEEEEeCCEEEEEEccccc
Confidence 6899999999999999864
No 9
>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding protein 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=29.85 E-value=8.3 Score=23.96 Aligned_cols=37 Identities=24% Similarity=0.407 Sum_probs=30.2
Q ss_pred EeecCCCCCee-EEeeeeeeecceeeeeEEeeecCCce
Q 032499 61 VDYNVPKKDFR-FQFMNSVRVADKPLNLTYIHGRGDNR 97 (139)
Q Consensus 61 iDy~vp~~d~R-FQFmn~~~v~~K~lnlTY~H~~~~nr 97 (139)
|+|.-+....+ .+-||...+.+|+|.+.|..++.++|
T Consensus 65 V~f~~~~~A~~Ai~~lng~~~~g~~i~V~~a~~k~~~k 102 (102)
T d2cpza1 65 VSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKNDSK 102 (102)
T ss_dssp EECSSHHHHHHHHHHHTTCEETTEECEEECCCCSCCCC
T ss_pred EEeCCHHHHHHHHHHhCCCEECCEEEEEEEeCCCCCCC
Confidence 78877766666 56789999999999999998887764
No 10
>d1tdja2 d.58.18.2 (A:336-423) Allosteric threonine deaminase C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=29.82 E-value=5.3 Score=25.93 Aligned_cols=37 Identities=22% Similarity=0.358 Sum_probs=22.6
Q ss_pred ecCceEEEeecCCCCCeeEEeeeeeeecceeeeeEEee---ecCCceeEEeeeEEE
Q 032499 54 EKPGFFIVDYNVPKKDFRFQFMNSVRVADKPLNLTYIH---GRGDNRTILEGTLVF 106 (139)
Q Consensus 54 EKPGsF~iDy~vp~~d~RFQFmn~~~v~~K~lnlTY~H---~~~~nrT~lDgtl~~ 106 (139)
||||||. +|.+ ++++ -|+|=-| +-.+..-|+=|.-+-
T Consensus 12 ErpGaf~------------~F~~---~lg~-~nITeF~YR~~~~~~a~VlvGi~~~ 51 (88)
T d1tdja2 12 EEKGSFL------------KFCQ---LLGG-RSVTEFNYRFADAKNACIFVGVRLS 51 (88)
T ss_dssp BSSSCSH------------HHHH---TTSS-SEEEEEEEECCCSSBCEEEEEEECS
T ss_pred CCccHHH------------HHHH---hcCc-CceEEEEEEccCCCCeEEEEEEEec
Confidence 8999996 4554 3454 3777555 445566666665443
No 11
>d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=26.61 E-value=17 Score=25.33 Aligned_cols=21 Identities=24% Similarity=0.313 Sum_probs=14.8
Q ss_pred cceEEEeecC-c-eEEEeecCCC
Q 032499 47 NGLALAVEKP-G-FFIVDYNVPK 67 (139)
Q Consensus 47 ~Gl~l~vEKP-G-sF~iDy~vp~ 67 (139)
++++-|+-.| + .++|.||+|+
T Consensus 81 ~v~~rGlDip~~v~~VI~~d~P~ 103 (248)
T d1gkub2 81 GTLVRGLDLPERIRFAVFVGCPS 103 (248)
T ss_dssp ----CCSCCTTTCCEEEEESCCE
T ss_pred chhhhccCccccccEEEEeCCCc
Confidence 5678888889 4 8999999993
No 12
>d1uula_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Trypanosoma cruzi [TaxId: 5693]}
Probab=24.59 E-value=17 Score=25.49 Aligned_cols=26 Identities=38% Similarity=0.680 Sum_probs=21.7
Q ss_pred eecCceEEEeecCCCCCeeEEeeeeeeec
Q 032499 53 VEKPGFFIVDYNVPKKDFRFQFMNSVRVA 81 (139)
Q Consensus 53 vEKPGsF~iDy~vp~~d~RFQFmn~~~v~ 81 (139)
+-+|+.|+|| |+.-+|..++|...+.
T Consensus 122 ~~~R~tfvID---~~G~I~~~~~~~~~~~ 147 (194)
T d1uula_ 122 VAYRGLFIID---PKQNLRQITVNDLPVG 147 (194)
T ss_dssp EECEEEEEEC---TTSBEEEEEEECTTBC
T ss_pred ceEEEEEEEC---CCCeEEEEEEecCCCC
Confidence 4479999999 8899999998877664
No 13
>d3dxoa1 d.17.4.19 (A:1-117) Uncharacterized protein Atu0744 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=24.05 E-value=71 Score=19.16 Aligned_cols=51 Identities=10% Similarity=0.143 Sum_probs=34.5
Q ss_pred CCeeEEeeeeeeecceeeeeEEeeecCCceeEEeeeE--EEecCCceeEEEEe
Q 032499 68 KDFRFQFMNSVRVADKPLNLTYIHGRGDNRTILEGTL--VFDSANKVSANHVL 118 (139)
Q Consensus 68 ~d~RFQFmn~~~v~~K~lnlTY~H~~~~nrT~lDgtl--~~D~aNK~s~~y~f 118 (139)
.+.+|.+...+...+-.+.+++.=........+.|.= .+|...|++--+.|
T Consensus 62 ~~~~~~~~~~v~~~~~~~~~~w~~~~~~~~~~~~G~d~~~~~~dGkI~~~~~f 114 (117)
T d3dxoa1 62 PGYRFVLAGTPDGHGNFTRFSWRLISPDGDDVAGGTDVVSLNTEGRIDNVVGF 114 (117)
T ss_dssp TTCEEEEEEEEEEETTEEEEEEEEECTTSCEEEEEEEEEEECTTSSEEEEEEE
T ss_pred CCcEEEEEEEEecCCCEEEEEEEEecCCCCeEEEEEEEEEECCCCCEEEEEEE
Confidence 4688888888877777777776544444556778864 45566677665554
No 14
>d2diba1 b.1.18.10 (A:8-122) Filamin b {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.32 E-value=5.6 Score=25.48 Aligned_cols=23 Identities=35% Similarity=0.444 Sum_probs=18.3
Q ss_pred eeCCcccceEEEeecCceEEEee
Q 032499 41 VNGPSLNGLALAVEKPGFFIVDY 63 (139)
Q Consensus 41 v~gpSL~Gl~l~vEKPGsF~iDy 63 (139)
+.||.|++-...+++|-.|.||=
T Consensus 19 v~G~Gl~~~~v~~~~~~~F~Vd~ 41 (115)
T d2diba1 19 VFGPGIEGKDVFREATTDFTVDS 41 (115)
T ss_dssp EESHHHHTSSCCTTCCEEEEEEC
T ss_pred EECCCccCCCccCCCCEEEEEEc
Confidence 56898876666678999999983
No 15
>d1h3ga1 b.1.18.2 (A:3-95) Cyclomaltodextrinase, N-terminal domain {Flavobacterium sp. 92 [TaxId: 197856]}
Probab=22.54 E-value=32 Score=22.29 Aligned_cols=12 Identities=25% Similarity=0.307 Sum_probs=6.0
Q ss_pred EEEEecCceEEe
Q 032499 21 TVAFNAGDVKLR 32 (139)
Q Consensus 21 tv~~~aGDlkLr 32 (139)
++.++..+|+|.
T Consensus 34 ~~~i~~~gV~l~ 45 (93)
T d1h3ga1 34 EAALDYPGVRLV 45 (93)
T ss_dssp EEEECBTTEEEE
T ss_pred ceEEeCCCeEEE
Confidence 444555555544
No 16
>d2gc9a1 b.60.1.6 (A:1-178) P-coumaric acid decarboxylase, pdc {Lactobacillus plantarum [TaxId: 1590]}
Probab=21.60 E-value=1.4e+02 Score=21.75 Aligned_cols=53 Identities=19% Similarity=0.217 Sum_probs=40.9
Q ss_pred EEeecCCCCC-----eeEEeeeeeeecceeeeeEEeeecCCceeEEeeeEEEecCCceeEEEE
Q 032499 60 IVDYNVPKKD-----FRFQFMNSVRVADKPLNLTYIHGRGDNRTILEGTLVFDSANKVSANHV 117 (139)
Q Consensus 60 ~iDy~vp~~d-----~RFQFmn~~~v~~K~lnlTY~H~~~~nrT~lDgtl~~D~aNK~s~~y~ 117 (139)
.|||-+|.-- ++.|=-+-+++.+.-.+++.+-.+| | +-+|++|+.||.=-...
T Consensus 35 tIdYrIHgG~vaGRwv~dq~~~~~~~~~~l~kisW~EpTG---T--~VSl~~~i~~k~~hg~I 92 (178)
T d2gc9a1 35 TVDYRIHGGMVAGRWVTDQKADIVMLTEGIYKISWTEPTG---T--DVALDFMPNEKKLHGTI 92 (178)
T ss_dssp EEEEEECSSTTTTCEEEEEECEEEEEETTEEEEEEECTTS---C--EEEEEEEGGGTEEEEEE
T ss_pred EEEEEEecCcccCceecceEEEEEEEcCCeEEEEeecCCC---C--EEEEEEeccccEEEEEE
Confidence 4788888765 8899999999999888888777655 3 56899999998644433
No 17
>d2cuaa_ b.6.1.2 (A:) Cytochrome c oxidase {Thermus thermophilus, ba3 type [TaxId: 274]}
Probab=21.15 E-value=76 Score=20.61 Aligned_cols=44 Identities=14% Similarity=0.250 Sum_probs=26.2
Q ss_pred EEEEecCc-eEEeeeeeceeee-eCCccc-----------ceEEEeecCceEEEeec
Q 032499 21 TVAFNAGD-VKLRASLTDATVV-NGPSLN-----------GLALAVEKPGFFIVDYN 64 (139)
Q Consensus 21 tv~~~aGD-lkLrAs~TDatfv-~gpSL~-----------Gl~l~vEKPGsF~iDy~ 64 (139)
.|.+++|+ ++|+.+-.|..-. .=|+++ =++|.-+|||.|.+=-.
T Consensus 48 ~l~vp~G~~V~~~lts~DV~H~f~ip~~~v~~d~~PG~~~~~~~~~~~~G~y~~~C~ 104 (122)
T d2cuaa_ 48 PIEVPQGAEIVFKITSPDVIHGFHVEGTNINVEVLPGEVSTVRYTFKRPGEYRIICN 104 (122)
T ss_dssp SEEEETTSEEEEEEEBSSSCEEEEETTSSCEEEECBTBCEEEEEECCSCEEEEEECC
T ss_pred EEEEeCCCEEEEEEEcCCccceeEecCCCeeEEEecCceEEEEEEeccceeEEEEeh
Confidence 58889997 8888877774310 013322 15556667777665443
Done!