BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 032500
         (139 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3EBQ|A Chain A, Crystal Structure Of Human Pppde1
          Length = 170

 Score = 42.0 bits (97), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 17/36 (47%), Positives = 22/36 (61%)

Query: 17  YKGNAYNLITKNCNHFCNDACIRLTGNPIPSWVNRL 52
           ++G AYNL   NCN F N+    LTG  IPS++  L
Sbjct: 98  FRGEAYNLFEHNCNTFSNEVAQFLTGRKIPSYITDL 133


>pdb|2WP7|A Chain A, Crystal Structure Of Desumoylase(Duf862)
          Length = 168

 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 17/36 (47%), Positives = 22/36 (61%)

Query: 17  YKGNAYNLITKNCNHFCNDACIRLTGNPIPSWVNRL 52
           ++G AYNL   NCN F N+    LTG  IPS++  L
Sbjct: 96  FRGEAYNLFEHNCNTFSNEVAQFLTGRKIPSYITDL 131


>pdb|2LBB|A Chain A, Solution Structure Of Acyl Coa Binding Protein From
          Babesia Bovis T2bo
          Length = 96

 Score = 26.9 bits (58), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 13/41 (31%), Positives = 19/41 (46%)

Query: 10 MEDLAEEYKGNAYNLITKNCNHFCNDACIRLTGNPIPSWVN 50
          M  L E+YK  A+N +         +A ++L     PSW N
Sbjct: 56 MLQLQEKYKWEAWNALRGMSTESAKEAYVKLLDTLAPSWRN 96


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.135    0.423 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,353,255
Number of Sequences: 62578
Number of extensions: 104933
Number of successful extensions: 210
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 205
Number of HSP's gapped (non-prelim): 5
length of query: 139
length of database: 14,973,337
effective HSP length: 89
effective length of query: 50
effective length of database: 9,403,895
effective search space: 470194750
effective search space used: 470194750
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 46 (22.3 bits)