Query 032500
Match_columns 139
No_of_seqs 140 out of 403
Neff 4.1
Searched_HMMs 29240
Date Tue Mar 26 00:35:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032500.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032500hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2wp7_A PPPDE peptidase domain- 99.9 6.4E-26 2.2E-30 177.5 1.5 65 1-76 79-144 (168)
2 4dpz_X HRAS-like suppressor 2; 94.6 0.013 4.4E-07 44.1 1.8 32 6-38 89-122 (137)
3 4dot_A Group XVI phospholipase 94.4 0.016 5.5E-07 43.7 2.0 43 6-51 89-132 (140)
4 1rpq_W Peptide E131; receptor- 57.3 2.8 9.6E-05 23.3 0.4 13 28-40 2-14 (26)
5 2wj8_A Nucleoprotein; RNA bind 32.9 28 0.00096 30.0 3.0 33 4-38 285-326 (391)
6 4b4o_A Epimerase family protei 30.2 94 0.0032 23.3 5.3 47 7-53 200-252 (298)
7 1ug8_A Poly(A)-specific ribonu 23.1 32 0.0011 23.9 1.4 39 4-42 11-50 (87)
8 2wuj_A Septum site-determining 22.8 35 0.0012 21.4 1.4 17 2-18 21-37 (57)
9 3dee_A Putative regulatory pro 22.1 1.4E+02 0.0049 23.4 5.2 51 1-56 58-108 (249)
10 2job_A Antilipopolysaccharide 19.5 66 0.0023 23.1 2.4 27 5-31 10-36 (102)
No 1
>2wp7_A PPPDE peptidase domain-containing protein 2; hydrolase, phosphoprotein, ubiquitin-like protein; 1.90A {Mus musculus} PDB: 3ebq_A
Probab=99.91 E-value=6.4e-26 Score=177.50 Aligned_cols=65 Identities=32% Similarity=0.546 Sum_probs=57.6
Q ss_pred CCHHHHHHHHHHHHhc-ccCCcccccccccccHHHHHHHHhcCCCCChHHHHhhhhhhhcccCCCcccccCcccccc
Q 032500 1 MGPAEVRTVMEDLAEE-YKGNAYNLITKNCNHFCNDACIRLTGNPIPSWVNRLARIGFFCNCVLPATLNSTRVRHHR 76 (139)
Q Consensus 1 Lt~~ev~~~l~~L~~~-f~g~tY~LL~kNCNHFs~~lc~~L~gk~IP~wVnrLA~iG~~~~ClLP~~~~~tpvg~~~ 76 (139)
++++||++||++|+++ |.+++||||.||||||||++|++|+||+||+||||||+ .++.||+|+++
T Consensus 79 ~~~~~~~~~l~~l~~~~~~g~~Y~Ll~~NCNhFs~~l~~~L~gk~IP~wInrl~~-----------~vl~tp~G~~l 144 (168)
T 2wp7_A 79 VTEEIFLEYLSSLGESLFRGEAYNLFEHNCNTFSNEVAQFLTGRKIPSYITDLPS-----------EVLSTPFGQAL 144 (168)
T ss_dssp CCHHHHHHHHHHHHTTTCSGGGCBTTTBSHHHHHHHHHHHHHSCCCCHHHHTHHH-----------HHHTSHHHHHH
T ss_pred CCHHHHHHHHHHhhhccCCcccCchhhhccchhHHHHHHHhcCCCCcHHHHHHHH-----------HHhcCcHHHHH
Confidence 6899999999999998 99999999999999999999999999999999999554 45555555554
No 2
>4dpz_X HRAS-like suppressor 2; alpha/beta fold, enzyme phospholipid acyltransferase, hydrol transferase; 1.25A {Homo sapiens} PDB: 4fa0_A 2kyt_A
Probab=94.61 E-value=0.013 Score=44.06 Aligned_cols=32 Identities=28% Similarity=0.553 Sum_probs=17.3
Q ss_pred HHHHHHHHHhcccC--CcccccccccccHHHHHHH
Q 032500 6 VRTVMEDLAEEYKG--NAYNLITKNCNHFCNDACI 38 (139)
Q Consensus 6 v~~~l~~L~~~f~g--~tY~LL~kNCNHFs~~lc~ 38 (139)
.++++++... ..| ..|+||.+||-||+..+-.
T Consensus 89 ~~~iv~rA~~-~lG~~~~Y~ll~nNCEHFvt~cry 122 (137)
T 4dpz_X 89 SNKIVKRAEE-LVGQELPYSLTSDNCEHFVNHLRY 122 (137)
T ss_dssp HHHHHHHHHH-HTTCEEC-----CHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HcCCCcccCcCccChHHHHHHHhc
Confidence 4455555533 334 4899999999999987543
No 3
>4dot_A Group XVI phospholipase A2; alpha/beta fold, phospholipase/acyltransferase, phosphatidyl phosphatidylethanolamine, membrane, hydrolase; 1.96A {Homo sapiens}
Probab=94.40 E-value=0.016 Score=43.72 Aligned_cols=43 Identities=23% Similarity=0.390 Sum_probs=25.1
Q ss_pred HHHHHHHHHhcccC-CcccccccccccHHHHHHHHhcCCCCChHHHH
Q 032500 6 VRTVMEDLAEEYKG-NAYNLITKNCNHFCNDACIRLTGNPIPSWVNR 51 (139)
Q Consensus 6 v~~~l~~L~~~f~g-~tY~LL~kNCNHFs~~lc~~L~gk~IP~wVnr 51 (139)
.++++++....-.- ..|+||.+||-||+..+-. |+..=.-|..
T Consensus 89 ~~~iv~rA~~~lG~e~~Y~ll~nNCEHFvt~cr~---G~~~S~Qv~~ 132 (140)
T 4dot_A 89 CSKIIQRAEELVGQEVLYKLTSENCEHFVNELRY---GVARSDQVRD 132 (140)
T ss_dssp HHHHHHHHHHTTTCBCSSCCCHHHHHHHHHHHHH---CCC-------
T ss_pred HHHHHHHHHHHcCCcccccccccChHHHHHHHhc---CCcccchhhh
Confidence 45666665443332 6999999999999987543 6654444433
No 4
>1rpq_W Peptide E131; receptor-peptide complex, membrane protein; HET: NAG BMA NDG CIT; 3.00A {Homo sapiens} PDB: 1kco_A
Probab=57.33 E-value=2.8 Score=23.29 Aligned_cols=13 Identities=38% Similarity=0.932 Sum_probs=9.7
Q ss_pred ccccHHHHHHHHh
Q 032500 28 NCNHFCNDACIRL 40 (139)
Q Consensus 28 NCNHFs~~lc~~L 40 (139)
.|+|||.++-..|
T Consensus 2 qcphfcyeldyel 14 (26)
T 1rpq_W 2 QCPHFCYELDYEL 14 (26)
T ss_dssp CCCTHHHHSSSCC
T ss_pred CCCeeeeecCccc
Confidence 5999998865544
No 5
>2wj8_A Nucleoprotein; RNA binding protein RNA complex, nucleocapsid (N), ribonucleoprotein, respiratory syncytial virus (RSV); 3.29A {Human respiratory syncytial virus astrain long} PDB: 2yhm_A 2yhp_A 2yhq_A
Probab=32.90 E-value=28 Score=29.99 Aligned_cols=33 Identities=21% Similarity=0.314 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHhcccCCcccccc---------cccccHHHHHHH
Q 032500 4 AEVRTVMEDLAEEYKGNAYNLIT---------KNCNHFCNDACI 38 (139)
Q Consensus 4 ~ev~~~l~~L~~~f~g~tY~LL~---------kNCNHFs~~lc~ 38 (139)
.||.+++.+|..+ .+-|||.. -||+||+.-+..
T Consensus 285 ~evy~~~~k~G~E--sG~~Hlr~nPKA~LLSLtncPnFaSVVLG 326 (391)
T 2wj8_A 285 VEVYEYAQKLGGE--AGFYHILNNPKASLLSLTQFPHFSSVVLG 326 (391)
T ss_dssp HHHHHHHHHHGGG--GGGTTTTTCGGGGGGCSTTCHHHHHHHHH
T ss_pred HHHHHHHHHhCcc--chhhhhhhCCcchheecccCCCchhheec
Confidence 3566777777754 23466655 499999976544
No 6
>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}
Probab=30.16 E-value=94 Score=23.28 Aligned_cols=47 Identities=17% Similarity=0.162 Sum_probs=29.1
Q ss_pred HHHHHHHHhcccCCccccccccccc---HHHHHHHHhcC---CCCChHHHHhh
Q 032500 7 RTVMEDLAEEYKGNAYNLITKNCNH---FCNDACIRLTG---NPIPSWVNRLA 53 (139)
Q Consensus 7 ~~~l~~L~~~f~g~tY~LL~kNCNH---Fs~~lc~~L~g---k~IP~wVnrLA 53 (139)
+.++.-+...=..+.||+-..+.-. |.+.+++.|.. -+||.|+.+++
T Consensus 200 ~a~~~~~~~~~~~g~yn~~~~~~~t~~e~~~~ia~~lgrp~~~pvP~~~~~~~ 252 (298)
T 4b4o_A 200 GILTHALEANHVHGVLNGVAPSSATNAEFAQTFGAALGRRAFIPLPSAVVQAV 252 (298)
T ss_dssp HHHHHHHHCTTCCEEEEESCSCCCBHHHHHHHHHHHHTCCCCCCBCHHHHHHH
T ss_pred HHHHHHHhCCCCCCeEEEECCCccCHHHHHHHHHHHhCcCCcccCCHHHHHHH
Confidence 3344444444345599998777655 44566666643 24899998864
No 7
>1ug8_A Poly(A)-specific ribonuclease; R3H domain, poly(A)-specific 3'-exoribonuclease, PARN, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.68.7.1
Probab=23.05 E-value=32 Score=23.91 Aligned_cols=39 Identities=13% Similarity=0.198 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHhcccCCccc-ccccccccHHHHHHHHhcC
Q 032500 4 AEVRTVMEDLAEEYKGNAYN-LITKNCNHFCNDACIRLTG 42 (139)
Q Consensus 4 ~ev~~~l~~L~~~f~g~tY~-LL~kNCNHFs~~lc~~L~g 42 (139)
..++++++++...+..++=+ |.--+||.|--.|...-+.
T Consensus 11 ~~id~i~~kIe~FL~s~~~~~l~l~pCN~f~RkLIYQ~~~ 50 (87)
T 1ug8_A 11 KFIDQVIEKIEDFLQSEEKRSLELDPCTGFQRKLIYQTLS 50 (87)
T ss_dssp HHHHHHHHHHHHHHHCSSCCEEECCCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCceecCCchHHHHHHHHHHHH
Confidence 45677777777777777744 8888899999888775433
No 8
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=22.83 E-value=35 Score=21.39 Aligned_cols=17 Identities=18% Similarity=0.479 Sum_probs=14.1
Q ss_pred CHHHHHHHHHHHHhccc
Q 032500 2 GPAEVRTVMEDLAEEYK 18 (139)
Q Consensus 2 t~~ev~~~l~~L~~~f~ 18 (139)
+++||++||+.+...|.
T Consensus 21 ~~~EVD~FLd~v~~~~~ 37 (57)
T 2wuj_A 21 DEDEVNEFLAQVRKDYE 37 (57)
T ss_dssp EHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 47899999999987664
No 9
>3dee_A Putative regulatory protein; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.10A {Neisseria gonorrhoeae fa 1090}
Probab=22.10 E-value=1.4e+02 Score=23.42 Aligned_cols=51 Identities=8% Similarity=0.080 Sum_probs=37.5
Q ss_pred CCHHHHHHHHHHHHhcccCCcccccccccccHHHHHHHHhcCCCCChHHHHhhhhh
Q 032500 1 MGPAEVRTVMEDLAEEYKGNAYNLITKNCNHFCNDACIRLTGNPIPSWVNRLARIG 56 (139)
Q Consensus 1 Lt~~ev~~~l~~L~~~f~g~tY~LL~kNCNHFs~~lc~~L~gk~IP~wVnrLA~iG 56 (139)
|+++.|+.+++..-.+....+..+ +++..+|..||.....+.|+-.||++=
T Consensus 58 lGee~f~~la~~f~~~hp~~sp~~-----~~~g~eF~~fL~~~~~~p~L~eLA~~E 108 (249)
T 3dee_A 58 FDSKEWSRLKEGFVRDARAQTPYF-----QEIPGEFLQYCQSLPLSDGILALMDFE 108 (249)
T ss_dssp SCHHHHHHHHHHHHHSGGGGCSCG-----GGHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred hCHHHHHHHHHHHHHhCCCCCchH-----HHHHHHHHHHHHcCCCChhHHHHHHHH
Confidence 355666666666666666655554 568999999998766788999999875
No 10
>2job_A Antilipopolysaccharide factor; ALF, lipid A binding protein, endotoxin, lipid binding protein; NMR {Penaeus monodon}
Probab=19.53 E-value=66 Score=23.12 Aligned_cols=27 Identities=11% Similarity=0.335 Sum_probs=23.9
Q ss_pred HHHHHHHHHHhcccCCccccccccccc
Q 032500 5 EVRTVMEDLAEEYKGNAYNLITKNCNH 31 (139)
Q Consensus 5 ev~~~l~~L~~~f~g~tY~LL~kNCNH 31 (139)
-+..+++.|..-|..++-+||-|-||-
T Consensus 10 l~~~i~~kl~~Lw~~g~v~~lGH~C~~ 36 (102)
T 2job_A 10 VAAAVASKIVGLWRNEKTELLGHECKF 36 (102)
T ss_dssp HHHHHHHHHHHTCCSSCEEETTEEEEE
T ss_pred HHHHHHHHHHhheeCCCEEEcCCeEEE
Confidence 367788999999999999999999983
Done!