Query 032500
Match_columns 139
No_of_seqs 140 out of 403
Neff 4.1
Searched_HMMs 13730
Date Tue Mar 26 00:35:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032500.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/032500hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1vlpa1 d.41.2.2 (A:1-149) Nic 26.9 5.8 0.00042 27.8 -0.2 39 5-43 52-91 (149)
2 d1f9ma_ c.47.1.1 (A:) Thioredo 24.6 33 0.0024 21.5 3.3 44 5-50 42-85 (112)
3 d2es7a1 c.47.1.20 (A:7-125) Hy 23.4 24 0.0017 22.7 2.5 44 5-49 47-90 (119)
4 d1dcpa_ d.74.1.1 (A:) Pterin-4 21.3 66 0.0048 20.2 4.4 37 1-37 3-43 (99)
5 d1t6sa1 a.4.5.60 (A:1-85) Segr 19.4 28 0.0021 21.4 2.1 17 2-18 37-53 (85)
6 d2oqea2 d.17.2.1 (A:18-115) Co 18.4 39 0.0029 21.3 2.7 43 1-44 11-55 (98)
7 d2b5ea4 c.47.1.2 (A:23-141) Pr 17.4 67 0.0048 19.8 3.7 44 5-49 44-87 (119)
8 d1noga_ a.25.2.2 (A:) Hypothet 16.8 33 0.0024 23.7 2.1 58 4-61 62-136 (149)
9 d1nw2a_ c.47.1.1 (A:) Thioredo 16.4 60 0.0044 19.3 3.2 44 5-50 34-77 (105)
10 d1fsga_ c.61.1.1 (A:) Hypoxant 16.4 52 0.0038 23.8 3.3 41 1-41 50-96 (233)
No 1
>d1vlpa1 d.41.2.2 (A:1-149) Nicotinate phosphoribosyltransferase, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=26.92 E-value=5.8 Score=27.83 Aligned_cols=39 Identities=3% Similarity=0.038 Sum_probs=31.0
Q ss_pred HHHHHHHHHH-hcccCCcccccccccccHHHHHHHHhcCC
Q 032500 5 EVRTVMEDLA-EEYKGNAYNLITKNCNHFCNDACIRLTGN 43 (139)
Q Consensus 5 ev~~~l~~L~-~~f~g~tY~LL~kNCNHFs~~lc~~L~gk 43 (139)
.+++.|+.|+ -.|..+..+-|..+|++|.+++..+|-+-
T Consensus 52 gl~~~i~~l~~lrFt~eel~yL~~~~~~~~~~fl~~L~~~ 91 (149)
T d1vlpa1 52 WLKEQFSYLGNLRFTEEEIEYLKQEIPYLPSAYIKYISSS 91 (149)
T ss_dssp HHHHHHHHGGGCCCCHHHHHHHHHHCTTSCHHHHHHHHST
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHcCCCCCHHHHHHHHhC
Confidence 4566677776 47888888888889999999998888763
No 2
>d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]}
Probab=24.58 E-value=33 Score=21.45 Aligned_cols=44 Identities=23% Similarity=0.314 Sum_probs=33.0
Q ss_pred HHHHHHHHHHhcccCCcccccccccccHHHHHHHHhcCCCCChHHH
Q 032500 5 EVRTVMEDLAEEYKGNAYNLITKNCNHFCNDACIRLTGNPIPSWVN 50 (139)
Q Consensus 5 ev~~~l~~L~~~f~g~tY~LL~kNCNHFs~~lc~~L~gk~IP~wVn 50 (139)
.+...+++|+.+|.+ .-++.-||+--..+++..+..+.+|..+.
T Consensus 42 ~~~p~~~~l~~~~~~--v~~~~vd~~~~~~~l~~~~~V~~~Pt~~~ 85 (112)
T d1f9ma_ 42 AMAPKYEKLAEEYLD--VIFLKLDCNQENKTLAKELGIRVVPTFKI 85 (112)
T ss_dssp HHHHHHHHHHHHCTT--SEEEEEECSSTTHHHHHHHCCSSSSEEEE
T ss_pred HHHHHHhhhcccccc--ceeecccccccchhhHhheeeccCCEEEE
Confidence 355678888888864 45677777766678999998899997654
No 3
>d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE {Salmonella typhimurium [TaxId: 90371]}
Probab=23.41 E-value=24 Score=22.71 Aligned_cols=44 Identities=9% Similarity=0.177 Sum_probs=34.5
Q ss_pred HHHHHHHHHHhcccCCcccccccccccHHHHHHHHhcCCCCChHH
Q 032500 5 EVRTVMEDLAEEYKGNAYNLITKNCNHFCNDACIRLTGNPIPSWV 49 (139)
Q Consensus 5 ev~~~l~~L~~~f~g~tY~LL~kNCNHFs~~lc~~L~gk~IP~wV 49 (139)
++.-++++|..+|.+.++.+..=||. -..++++.+..+.||.-+
T Consensus 47 ~~~pvl~eL~~~~~~~~~~~~~Vd~d-~~~~l~~~~~V~~~Pt~~ 90 (119)
T d2es7a1 47 DNPVMIAELLREFPQFDWQVAVADLE-QSEAIGDRFNVRRFPATL 90 (119)
T ss_dssp CHHHHHHHHHHTCTTSCCEEEEECHH-HHHHHHHTTTCCSSSEEE
T ss_pred HHHHHHHHHHHhcCCCceEEEEEECC-CCHHHHHhcCcCcceEEE
Confidence 46678999999999888887766765 335788999999998654
No 4
>d1dcpa_ d.74.1.1 (A:) Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH) {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=21.28 E-value=66 Score=20.18 Aligned_cols=37 Identities=14% Similarity=0.200 Sum_probs=26.0
Q ss_pred CCHHHHHHHHHHHHh-cccCC-ccccccc--ccccHHHHHH
Q 032500 1 MGPAEVRTVMEDLAE-EYKGN-AYNLITK--NCNHFCNDAC 37 (139)
Q Consensus 1 Lt~~ev~~~l~~L~~-~f~g~-tY~LL~k--NCNHFs~~lc 37 (139)
|+++|++..|.+|.. .|.-. .-.-|.| .+..|.+++.
T Consensus 3 Ls~ee~~~~l~~L~~~GW~~~~~~~~L~r~f~F~~f~~a~~ 43 (99)
T d1dcpa_ 3 LSAEERDQLLPNLRAVGWNELEGRDAIFKQFHFKDFNRAFG 43 (99)
T ss_dssp CCHHHHHHHHHHHHHHTCEECTTSSCEEEEEECSSHHHHHH
T ss_pred CCHHHHHHHHHhCCCCCCEEEcCCCeEEEEEEeCCHHHHHH
Confidence 789999999999974 68643 2333443 6777877654
No 5
>d1t6sa1 a.4.5.60 (A:1-85) Segregation and condensation protein B, ScpB {Chlorobium tepidum [TaxId: 1097]}
Probab=19.45 E-value=28 Score=21.38 Aligned_cols=17 Identities=24% Similarity=0.732 Sum_probs=14.4
Q ss_pred CHHHHHHHHHHHHhccc
Q 032500 2 GPAEVRTVMEDLAEEYK 18 (139)
Q Consensus 2 t~~ev~~~l~~L~~~f~ 18 (139)
++.+++++|++|..+|.
T Consensus 37 ~~~~i~~~l~~L~~~y~ 53 (85)
T d1t6sa1 37 TPSELQEAVDELNRDYE 53 (85)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHh
Confidence 57889999999998873
No 6
>d2oqea2 d.17.2.1 (A:18-115) Copper amine oxidase, domains 1 and 2 {Yeast (Hansenula polymorpha) [TaxId: 4905]}
Probab=18.42 E-value=39 Score=21.32 Aligned_cols=43 Identities=9% Similarity=0.112 Sum_probs=26.9
Q ss_pred CCHHHHHHHHHHHHhcccCCcccc--cccccccHHHHHHHHhcCCC
Q 032500 1 MGPAEVRTVMEDLAEEYKGNAYNL--ITKNCNHFCNDACIRLTGNP 44 (139)
Q Consensus 1 Lt~~ev~~~l~~L~~~f~g~tY~L--L~kNCNHFs~~lc~~L~gk~ 44 (139)
||++||....+-+++.|.++.+.. +.-.=+.- .++..++.|..
T Consensus 11 Lt~~Ei~~a~~ivr~~~~~~~~~F~~i~L~EP~K-~~vl~~~~~~~ 55 (98)
T d2oqea2 11 LSTAEIKAATNTVKSYFAGKKISFNTVTLREPAR-KAYIQWKEQGG 55 (98)
T ss_dssp CCHHHHHHHHHHHHHHTTTSCEEEEEEEEECCCH-HHHHHHHHSCC
T ss_pred CCHHHHHHHHHHHHHhCCCCCeEEEEeeccCCCH-HHHHhhhhCCC
Confidence 789999999999998888765432 11111112 35556665543
No 7
>d2b5ea4 c.47.1.2 (A:23-141) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=17.36 E-value=67 Score=19.77 Aligned_cols=44 Identities=18% Similarity=0.246 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhcccCCcccccccccccHHHHHHHHhcCCCCChHH
Q 032500 5 EVRTVMEDLAEEYKGNAYNLITKNCNHFCNDACIRLTGNPIPSWV 49 (139)
Q Consensus 5 ev~~~l~~L~~~f~g~tY~LL~kNCNHFs~~lc~~L~gk~IP~wV 49 (139)
++...+++|...|..+...+..=||... .++|..+....+|.-+
T Consensus 44 ~~~~~~~~la~~~~~~~v~~~~vd~~~~-~~l~~~~~v~~~Pti~ 87 (119)
T d2b5ea4 44 NMAPEYVKAAETLVEKNITLAQIDCTEN-QDLCMEHNIPGFPSLK 87 (119)
T ss_dssp HHHHHHHHHHHHTTTTTCEEEEEETTTC-HHHHHHTTCCSSSEEE
T ss_pred ccchhhhhhhhhhcccceeeeeeeccch-HHHHHHhccccCCeEE
Confidence 4566677788777766667777788764 4788888888888643
No 8
>d1noga_ a.25.2.2 (A:) Hypothetical protein Ta0546 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Probab=16.85 E-value=33 Score=23.68 Aligned_cols=58 Identities=16% Similarity=0.227 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHhcccCCcccccccccc-----cHHHHHHHHhc------------CCCCChHHHHhhhhhhhccc
Q 032500 4 AEVRTVMEDLAEEYKGNAYNLITKNCN-----HFCNDACIRLT------------GNPIPSWVNRLARIGFFCNC 61 (139)
Q Consensus 4 ~ev~~~l~~L~~~f~g~tY~LL~kNCN-----HFs~~lc~~L~------------gk~IP~wVnrLA~iG~~~~C 61 (139)
+.+++.|++|..+..+-+.=+|.--+. |.+-.+|++.. ...+..|+|||+++-|....
T Consensus 62 ~~LE~~id~~~~~lp~l~~FiLPGG~~~~a~lH~aRtv~RRaER~lv~l~~~~~v~~~~~~YlNRLSD~lFvlAR 136 (149)
T d1noga_ 62 DYLEARVKEMKAEIGKIELFVVPGGSVESASLHMARAVSRRLERRIVAASKLTEINKNVLIYANRLSSILFMHAL 136 (149)
T ss_dssp HHHHHHHHHHHHHHCCCCSCBCSCSSHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhccccceeecCCchHHHHHHHHHhhhhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHHHHH
Confidence 345666777777777766667776653 66666665432 23356799999998776443
No 9
>d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]}
Probab=16.43 E-value=60 Score=19.35 Aligned_cols=44 Identities=16% Similarity=0.207 Sum_probs=33.3
Q ss_pred HHHHHHHHHHhcccCCcccccccccccHHHHHHHHhcCCCCChHHH
Q 032500 5 EVRTVMEDLAEEYKGNAYNLITKNCNHFCNDACIRLTGNPIPSWVN 50 (139)
Q Consensus 5 ev~~~l~~L~~~f~g~tY~LL~kNCNHFs~~lc~~L~gk~IP~wVn 50 (139)
.+...+++|..+|.+ ...+..=||... .++|..+..+.+|..|.
T Consensus 34 ~~~~~~~~l~~~~~~-~~~~~~vd~~~~-~~~~~~~~V~~~Pt~~~ 77 (105)
T d1nw2a_ 34 MMAPVLEEFAEAHAD-KVTVAKLNVDEN-PETTSQFGIMSIPTLIL 77 (105)
T ss_dssp HHHHHHHHHHHHHTT-TCEEEEEETTTC-HHHHHHTTCCBSSEEEE
T ss_pred cccchhhhhhhhcCC-ceEEEEEECCCC-cccHHHCCcceeeEEEE
Confidence 456677888888865 578888898876 57788888888886554
No 10
>d1fsga_ c.61.1.1 (A:) Hypoxanthine-guanine-xanthine PRTase {Toxoplasma gondii [TaxId: 5811]}
Probab=16.39 E-value=52 Score=23.79 Aligned_cols=41 Identities=27% Similarity=0.309 Sum_probs=32.2
Q ss_pred CCHHHHHHHHHHHH----hcccCCcccc--cccccccHHHHHHHHhc
Q 032500 1 MGPAEVRTVMEDLA----EEYKGNAYNL--ITKNCNHFCNDACIRLT 41 (139)
Q Consensus 1 Lt~~ev~~~l~~L~----~~f~g~tY~L--L~kNCNHFs~~lc~~L~ 41 (139)
++.++|++-|++|+ +.|.+....| +.+.+=.|+.+|++.|.
T Consensus 50 i~~~~I~~rI~rLA~eI~e~~~~k~~vlIgIl~Gg~~fa~~L~~~L~ 96 (233)
T d1fsga_ 50 LPGGLVKDRVEKLAYDIHRTYFGEELHIICILKGSRGFFNLLIDYLA 96 (233)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHTTSCEEEEEEETTTHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHcCCCCeEEEEEecCCHHHHHHHHHHHH
Confidence 46788998888887 4576666554 35899999999999884
Done!