Query 032501
Match_columns 139
No_of_seqs 104 out of 265
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 14:54:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032501.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032501hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1664 Vacuolar H+-ATPase V1 100.0 1.2E-48 2.5E-53 311.4 18.0 135 1-136 1-135 (220)
2 PF01991 vATP-synt_E: ATP synt 99.8 9.3E-17 2E-21 123.6 16.5 121 16-137 1-121 (198)
3 COG1390 NtpE Archaeal/vacuolar 99.7 5.6E-15 1.2E-19 117.4 17.6 127 9-138 3-129 (194)
4 PRK03963 V-type ATP synthase s 99.6 1.1E-13 2.5E-18 108.0 18.0 126 10-138 4-129 (198)
5 PRK01194 V-type ATP synthase s 99.6 6.3E-13 1.4E-17 104.5 17.6 123 11-137 4-127 (185)
6 PRK02292 V-type ATP synthase s 99.3 4.2E-10 9.1E-15 87.5 17.6 118 10-138 3-124 (188)
7 PRK01558 V-type ATP synthase s 98.4 6E-05 1.3E-09 59.8 17.6 125 3-136 2-126 (198)
8 PRK01005 V-type ATP synthase s 98.2 0.0002 4.4E-09 57.6 16.6 111 4-122 8-119 (207)
9 PRK08475 F0F1 ATP synthase sub 96.7 0.083 1.8E-06 40.8 12.6 88 12-115 77-164 (167)
10 TIGR02499 HrpE_YscL_not type I 96.4 0.27 6E-06 36.7 14.3 108 14-138 15-123 (166)
11 PF06188 HrpE: HrpE/YscL/FliH 95.5 0.93 2E-05 35.9 14.3 109 14-138 32-140 (191)
12 PRK09098 type III secretion sy 94.2 2.6 5.5E-05 34.5 16.7 116 5-138 43-160 (233)
13 PRK06937 type III secretion sy 91.8 5.3 0.00011 31.5 14.2 106 17-138 35-140 (204)
14 TIGR03321 alt_F1F0_F0_B altern 90.9 7.6 0.00016 31.5 13.9 91 16-118 64-154 (246)
15 PRK14474 F0F1 ATP synthase sub 89.4 11 0.00023 31.0 11.8 66 18-83 66-131 (250)
16 PRK07352 F0F1 ATP synthase sub 88.8 9 0.0002 29.3 14.2 92 15-118 77-168 (174)
17 TIGR03825 FliH_bacil flagellar 87.7 14 0.0003 30.2 17.5 124 10-138 49-185 (255)
18 CHL00019 atpF ATP synthase CF0 87.0 12 0.00027 28.9 16.0 92 15-118 82-173 (184)
19 COG1317 FliH Flagellar biosynt 86.2 17 0.00037 29.7 16.1 122 3-138 39-167 (234)
20 PRK06231 F0F1 ATP synthase sub 86.1 16 0.00034 29.2 14.2 94 14-119 105-198 (205)
21 PRK03963 V-type ATP synthase s 85.8 14 0.00031 28.5 15.1 97 5-101 10-118 (198)
22 PRK14473 F0F1 ATP synthase sub 84.6 15 0.00033 27.7 14.0 94 14-119 65-158 (164)
23 PRK01194 V-type ATP synthase s 84.2 18 0.00039 28.3 13.1 96 5-100 9-117 (185)
24 PRK08404 V-type ATP synthase s 83.3 14 0.00031 26.4 11.2 65 16-80 17-81 (103)
25 TIGR02926 AhaH ATP synthase ar 81.8 14 0.0003 25.2 7.7 52 11-62 19-70 (85)
26 PRK13428 F0F1 ATP synthase sub 79.5 45 0.00097 29.7 15.8 94 14-118 58-151 (445)
27 PRK13460 F0F1 ATP synthase sub 77.9 29 0.00063 26.5 14.2 93 15-119 74-166 (173)
28 COG2811 NtpF Archaeal/vacuolar 76.8 27 0.00059 25.7 9.2 43 15-57 31-73 (108)
29 PRK07353 F0F1 ATP synthase sub 76.7 26 0.00057 25.5 9.5 43 16-58 64-106 (140)
30 CHL00118 atpG ATP synthase CF0 76.6 30 0.00065 26.1 9.5 53 15-67 80-132 (156)
31 PRK05759 F0F1 ATP synthase sub 75.5 30 0.00066 25.6 13.9 93 14-118 61-153 (156)
32 PRK13455 F0F1 ATP synthase sub 74.2 38 0.00082 26.1 13.6 89 18-118 88-176 (184)
33 PRK02292 V-type ATP synthase s 72.9 40 0.00087 25.8 13.1 85 9-96 24-112 (188)
34 PRK09174 F0F1 ATP synthase sub 72.2 48 0.0011 26.4 9.5 48 15-62 111-158 (204)
35 PRK14472 F0F1 ATP synthase sub 72.0 42 0.00091 25.6 13.8 92 15-118 76-167 (175)
36 PRK06328 type III secretion sy 69.8 57 0.0012 26.3 14.3 106 17-138 34-141 (223)
37 PRK13461 F0F1 ATP synthase sub 68.0 49 0.0011 24.8 14.2 93 15-119 63-155 (159)
38 PRK06669 fliH flagellar assemb 64.5 79 0.0017 25.9 17.9 59 75-137 154-214 (281)
39 PRK08476 F0F1 ATP synthase sub 63.7 59 0.0013 24.2 9.4 50 15-64 65-114 (141)
40 TIGR01144 ATP_synt_b ATP synth 61.9 60 0.0013 23.7 12.1 55 15-69 53-107 (147)
41 PRK13460 F0F1 ATP synthase sub 61.3 65 0.0014 24.6 7.7 34 9-42 94-127 (173)
42 PRK14471 F0F1 ATP synthase sub 60.7 70 0.0015 24.0 8.0 95 13-118 64-158 (164)
43 PRK00106 hypothetical protein; 59.4 1.5E+02 0.0032 27.4 15.9 26 80-105 139-164 (535)
44 PRK08404 V-type ATP synthase s 58.7 64 0.0014 23.0 8.0 68 15-86 27-94 (103)
45 PRK07352 F0F1 ATP synthase sub 58.1 81 0.0018 24.0 8.0 39 7-45 95-133 (174)
46 PRK13453 F0F1 ATP synthase sub 57.4 85 0.0018 24.0 11.9 54 16-69 77-130 (173)
47 PRK08475 F0F1 ATP synthase sub 56.7 87 0.0019 23.9 8.2 47 6-52 97-143 (167)
48 TIGR02926 AhaH ATP synthase ar 56.6 60 0.0013 22.0 9.8 32 17-48 14-45 (85)
49 PRK14471 F0F1 ATP synthase sub 55.1 88 0.0019 23.5 15.5 30 69-98 101-130 (164)
50 PF00430 ATP-synt_B: ATP synth 52.7 79 0.0017 22.3 9.2 42 16-57 58-99 (132)
51 PRK13461 F0F1 ATP synthase sub 52.4 96 0.0021 23.1 8.0 37 17-53 76-112 (159)
52 CHL00019 atpF ATP synthase CF0 52.2 1.1E+02 0.0023 23.6 8.0 38 9-46 102-139 (184)
53 PRK06231 F0F1 ATP synthase sub 51.4 1.2E+02 0.0026 24.0 8.0 48 12-59 114-161 (205)
54 PRK14475 F0F1 ATP synthase sub 49.3 1.1E+02 0.0025 23.1 12.1 24 19-42 72-95 (167)
55 PRK12704 phosphodiesterase; Pr 48.7 2.1E+02 0.0046 26.1 15.9 24 81-104 125-148 (520)
56 PF01991 vATP-synt_E: ATP synt 48.3 1.2E+02 0.0025 22.9 13.1 94 8-101 4-111 (198)
57 PF10557 Cullin_Nedd8: Cullin 47.1 24 0.00053 23.0 2.8 60 69-129 4-65 (68)
58 PRK13453 F0F1 ATP synthase sub 44.6 1.4E+02 0.003 22.8 8.0 21 40-60 112-132 (173)
59 PRK06568 F0F1 ATP synthase sub 41.7 1.6E+02 0.0035 22.7 9.5 19 18-36 65-83 (154)
60 PRK13454 F0F1 ATP synthase sub 40.0 1.7E+02 0.0038 22.6 11.0 35 15-49 89-123 (181)
61 TIGR01144 ATP_synt_b ATP synth 39.9 1.5E+02 0.0032 21.6 8.0 45 17-61 66-110 (147)
62 PRK14473 F0F1 ATP synthase sub 38.7 1.7E+02 0.0036 22.0 8.0 47 15-61 77-123 (164)
63 KOG1029 Endocytic adaptor prot 37.1 4.4E+02 0.0094 26.3 14.5 77 37-120 404-480 (1118)
64 PRK09173 F0F1 ATP synthase sub 35.5 1.9E+02 0.004 21.6 12.0 46 74-120 100-153 (159)
65 PRK01558 V-type ATP synthase s 34.8 2.2E+02 0.0048 22.3 13.4 30 8-37 18-47 (198)
66 PF10669 Phage_Gp23: Protein g 34.5 1.9E+02 0.0041 21.4 6.4 42 47-90 51-92 (121)
67 KOG2880 SMAD6 interacting prot 32.7 3.5E+02 0.0076 24.3 8.4 58 13-70 85-142 (424)
68 PRK14475 F0F1 ATP synthase sub 31.9 2.3E+02 0.0049 21.5 14.0 76 38-118 76-159 (167)
69 PF03179 V-ATPase_G: Vacuolar 30.7 1.9E+02 0.0041 20.1 11.1 43 80-122 59-101 (105)
70 COG0711 AtpF F0F1-type ATP syn 30.3 2.4E+02 0.0053 21.3 12.2 67 17-87 66-132 (161)
71 TIGR03319 YmdA_YtgF conserved 29.9 4.3E+02 0.0094 24.1 15.0 104 17-120 26-137 (514)
72 CHL00118 atpG ATP synthase CF0 29.5 2.4E+02 0.0053 21.0 8.0 44 18-61 94-137 (156)
73 PF00430 ATP-synt_B: ATP synth 28.4 2.1E+02 0.0046 20.0 6.1 46 15-60 68-113 (132)
74 PRK07353 F0F1 ATP synthase sub 28.3 2.3E+02 0.005 20.4 8.0 24 33-56 92-115 (140)
75 PF12072 DUF3552: Domain of un 26.9 3.1E+02 0.0068 21.5 17.4 107 11-117 48-159 (201)
76 PF01765 RRF: Ribosome recycli 26.1 2.9E+02 0.0064 20.9 8.6 31 6-36 91-121 (165)
77 PF07052 Hep_59: Hepatocellula 24.6 52 0.0011 23.4 1.7 14 11-24 14-27 (104)
78 PRK12705 hypothetical protein; 21.6 6.4E+02 0.014 23.2 16.8 34 13-46 49-82 (508)
79 PF09106 SelB-wing_2: Elongati 21.2 81 0.0017 19.8 1.9 26 106-132 33-58 (59)
80 PF06969 HemN_C: HemN C-termin 21.2 81 0.0018 19.7 1.9 26 108-134 36-61 (66)
81 PRK14472 F0F1 ATP synthase sub 20.5 3.9E+02 0.0084 20.2 9.2 24 73-96 115-138 (175)
No 1
>KOG1664 consensus Vacuolar H+-ATPase V1 sector, subunit E [Energy production and conversion]
Probab=100.00 E-value=1.2e-48 Score=311.41 Aligned_cols=135 Identities=56% Similarity=0.749 Sum_probs=133.6
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHhhhHHHHH
Q 032501 1 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIK 80 (139)
Q Consensus 1 m~d~ev~~qi~~Mv~FI~qEA~EKA~EI~~kA~Eef~iEK~~lV~~ek~kI~~~yekK~kq~e~~kkI~~S~~~N~~Rlk 80 (139)
|||++|++||+||++||+|||+|||+||.++|+|||||||++||++++.+|+.+|++|+||++++++|+.||.+|++||+
T Consensus 1 lsD~dv~kqi~~M~aFI~qEA~EKA~EI~~kAeeEfnIEK~rlV~~q~~kI~~~yekKeKqve~~kkI~~S~~lN~~RlK 80 (220)
T KOG1664|consen 1 LSDADVSKQIKHMVAFIRQEAEEKAKEIDAKAEEEFNIEKGRLVQEQRLKIMQYYEKKEKQVELQKKIAKSNLLNQSRLK 80 (220)
T ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHhhhhhhhhcCcceeeecc
Q 032501 81 VLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQVSGIKLVFPLFCVFSI 136 (139)
Q Consensus 81 vL~ar~~~i~~l~~ea~~kL~~~~~d~~~Y~~lL~~LI~Qgl~ikL~e~~v~v~~~ 136 (139)
+|++|+++|+++|++|+++|..++.|++.|+.+|++||+||| .+|.||.|.|+..
T Consensus 81 vL~ar~d~i~~i~~ea~k~Ls~i~~~~~~Y~~lL~~LivQ~L-l~L~Ep~~Ivrcr 135 (220)
T KOG1664|consen 81 VLRARDDIIDDILDEAKKRLSKVSKDTDRYKKLLKDLIVQGL-LQLLEPEVIVRCR 135 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHH-HHhCCCeeEEeeh
Confidence 999999999999999999999999999999999999999999 9999999999875
No 2
>PF01991 vATP-synt_E: ATP synthase (E/31 kDa) subunit; InterPro: IPR002842 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit E from the V1 and A1 complexes of V- and A-ATPases, respectively. Subunit E appears to form a tight interaction with subunit G in the F0 complex, which together may act as stators to prevent certain subunits from rotating with the central rotary element, much in the same way as the F0 complex subunit B does in F-ATPases []. In addition to its key role in stator structure, subunit E appears to have a role in mediating interactions with putative regulatory subunits []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 3LG8_A 2KK7_A 4DT0_A 2DM9_A 2DMA_A 3V6I_A 3K5B_A 3J0J_L 2KZ9_A.
Probab=99.75 E-value=9.3e-17 Score=123.61 Aligned_cols=121 Identities=31% Similarity=0.358 Sum_probs=116.9
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHH
Q 032501 16 FIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEA 95 (139)
Q Consensus 16 FI~qEA~EKA~EI~~kA~Eef~iEK~~lV~~ek~kI~~~yekK~kq~e~~kkI~~S~~~N~~RlkvL~ar~~~i~~l~~e 95 (139)
||.+||+.+|++|...|+++++-.+..........+...+++..++++..+....|...+.+|..+|.+|+++|++++++
T Consensus 1 ~I~~eA~~ka~~I~~eA~~e~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~r~~~l~~k~~~i~~v~~~ 80 (198)
T PF01991_consen 1 EIEEEAQEKAEEIIAEAQEEAEKILEEAEEEAEKEIEEIIEKAEKEAEQEKEREISKAELEARRELLEAKQEIIDEVFEE 80 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccChhHHHHHHHHHHhhhhhhhhcCcceeeeccC
Q 032501 96 ASKEVLNVSRDHNSYKKLLKGLIVQVSGIKLVFPLFCVFSIS 137 (139)
Q Consensus 96 a~~kL~~~~~d~~~Y~~lL~~LI~Qgl~ikL~e~~v~v~~~~ 137 (139)
++.+|..++++++.|+.+|.+||.+++ ..+.++++.|.++.
T Consensus 81 ~~~~L~~~~~~~~~Y~~~L~~li~~~~-~~~~~~~~~v~~~~ 121 (198)
T PF01991_consen 81 VKEKLKSFSKDPDDYKKFLKKLIEEAA-EKLGEGEVIVYVNK 121 (198)
T ss_dssp HHHHHHCTTCCC-THHHHHHHHHHHHH-HCCTTSCEEEEECC
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHH-HHhcCCceEEeccc
Confidence 999999999998789999999999999 99999999998865
No 3
>COG1390 NtpE Archaeal/vacuolar-type H+-ATPase subunit E [Energy production and conversion]
Probab=99.68 E-value=5.6e-15 Score=117.45 Aligned_cols=127 Identities=25% Similarity=0.366 Sum_probs=121.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHhhhHHHHHHHHHHHHH
Q 032501 9 QIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDL 88 (139)
Q Consensus 9 qi~~Mv~FI~qEA~EKA~EI~~kA~Eef~iEK~~lV~~ek~kI~~~yekK~kq~e~~kkI~~S~~~N~~RlkvL~ar~~~ 88 (139)
.+..|++||.++|.++|++|...|.++++..+...+......+...+.+.+++++..++...|+..+++|..+|.+++++
T Consensus 3 ~~e~~i~~I~~~a~eeak~I~~eA~~eae~i~~ea~~~~~~~~~~~~~~~~~ea~~~~~~iis~A~le~r~~~Le~~ee~ 82 (194)
T COG1390 3 ELEKLIKKILREAEEEAEEILEEAREEAEKIKEEAKREAEEAIEEILRKAEKEAERERQRIISSALLEARRKLLEAKEEI 82 (194)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccChhHHHHHHHHHHhhhhhhhhcCcceeeeccCC
Q 032501 89 VSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQVSGIKLVFPLFCVFSISH 138 (139)
Q Consensus 89 i~~l~~ea~~kL~~~~~d~~~Y~~lL~~LI~Qgl~ikL~e~~v~v~~~~~ 138 (139)
|+.+++.+.++|..++.+|. |.. |..|+.+|+ .++..|++.|.++.+
T Consensus 83 l~~~~~~~~e~L~~i~~~~~-~~~-l~~ll~~~~-~~~~~~~~iV~~~e~ 129 (194)
T COG1390 83 LESVFEAVEEKLRNIASDPE-YES-LQELLIEAL-EKLLGGELVVYLNEK 129 (194)
T ss_pred HHHHHHHHHHHHHcCcCCcc-hHH-HHHHHHHHH-HhcCCCCeEEEeCcc
Confidence 99999999999999999985 444 999999999 999999999998865
No 4
>PRK03963 V-type ATP synthase subunit E; Provisional
Probab=99.61 E-value=1.1e-13 Score=107.99 Aligned_cols=126 Identities=23% Similarity=0.215 Sum_probs=110.7
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHhhhHHHHHHHHHHHHHH
Q 032501 10 IQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLV 89 (139)
Q Consensus 10 i~~Mv~FI~qEA~EKA~EI~~kA~Eef~iEK~~lV~~ek~kI~~~yekK~kq~e~~kkI~~S~~~N~~RlkvL~ar~~~i 89 (139)
+..++.=|..+|+.++++|-..|..+..-................-++-...++..++...|+..+++|.++|.+|++++
T Consensus 4 l~~i~~~il~~A~~ea~~il~~A~~~a~~i~~~a~~~a~~~~~~i~~~a~~~ae~ek~r~~s~a~~e~r~~~l~ar~el~ 83 (198)
T PRK03963 4 AELIIQEINREAEQKIEYILEEAQKEAEKIKEEARKRAESKAEWILRKAKTQAELEKQRIIANAKLEVRRKRLAVQEELI 83 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788889999999999999999988777666666666555555667777888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccChhHHHHHHHHHHhhhhhhhhcCcceeeeccCC
Q 032501 90 SNMMEAASKEVLNVSRDHNSYKKLLKGLIVQVSGIKLVFPLFCVFSISH 138 (139)
Q Consensus 90 ~~l~~ea~~kL~~~~~d~~~Y~~lL~~LI~Qgl~ikL~e~~v~v~~~~~ 138 (139)
+++|++|.++|..++.+ .|+.+|.+||.+|+ ..|.+++|+|.++.+
T Consensus 84 ~~v~~~a~~~l~~~~~~--~Y~~~l~~li~~a~-~~l~~~~i~i~~~~~ 129 (198)
T PRK03963 84 SEVLEAVRERLAELPED--EYFETLKALTKEAV-EELGEDKVVVRSNER 129 (198)
T ss_pred HHHHHHHHHHHHhhhhh--hHHHHHHHHHHHHH-HHhCCCcEEEEEccc
Confidence 99999999999999877 89999999999999 999999999998764
No 5
>PRK01194 V-type ATP synthase subunit E; Provisional
Probab=99.55 E-value=6.3e-13 Score=104.46 Aligned_cols=123 Identities=13% Similarity=0.196 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhHHHHHHHHHhHhhhHHHHHHHHHHHHHH
Q 032501 11 QQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEY-ERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLV 89 (139)
Q Consensus 11 ~~Mv~FI~qEA~EKA~EI~~kA~Eef~iEK~~lV~~ek~kI~~~y-ekK~kq~e~~kkI~~S~~~N~~RlkvL~ar~~~i 89 (139)
..++.=|..+|+.+|++|...|+.+.+- =..-...+-.++...| .+..++++..++...|+.-=.+|+++|.+|+++|
T Consensus 4 e~i~~~I~~ea~~~a~~I~~eA~~~aee-i~~ea~~~a~~~~~~~~~k~~~e~~~~~~riis~A~Le~R~~~L~aree~I 82 (185)
T PRK01194 4 EDVIKDIEKSREEKKKEINDEYSKRIEK-LEKECDSKIQSIKEYYEKKMRAEISRLKKSIIDKANIEARSIKREKRREIL 82 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3444455555555555555555554321 1111222223455555 4445567777777778888899999999999999
Q ss_pred HHHHHHHHHHHHhhccChhHHHHHHHHHHhhhhhhhhcCcceeeeccC
Q 032501 90 SNMMEAASKEVLNVSRDHNSYKKLLKGLIVQVSGIKLVFPLFCVFSIS 137 (139)
Q Consensus 90 ~~l~~ea~~kL~~~~~d~~~Y~~lL~~LI~Qgl~ikL~e~~v~v~~~~ 137 (139)
+++|+.|.++|..+++++ .|+++|.+||.+|+ .. .+|+|.|+++.
T Consensus 83 ~~v~~~a~e~L~~l~~~~-~Y~~~L~~LI~~a~-~~-l~~~~~v~~~~ 127 (185)
T PRK01194 83 KDYLDIAYEHLMNITKSK-EYDSILNKMIEVAI-KT-LGEDCIIKVSE 127 (185)
T ss_pred HHHHHHHHHHHHcccCCc-hHHHHHHHHHHHHH-Hh-cCCCeEEEEcH
Confidence 999999999999999876 89999999999999 88 67898888764
No 6
>PRK02292 V-type ATP synthase subunit E; Provisional
Probab=99.30 E-value=4.2e-10 Score=87.48 Aligned_cols=118 Identities=21% Similarity=0.313 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH---HHHHH-HHHHhhHHHHHHHHHhHhhhHHHHHHHHHH
Q 032501 10 IQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKK---IRQEY-ERKEKQVEIRKKIEYSMQLNASRIKVLQAQ 85 (139)
Q Consensus 10 i~~Mv~FI~qEA~EKA~EI~~kA~Eef~iEK~~lV~~ek~k---I~~~y-ekK~kq~e~~kkI~~S~~~N~~RlkvL~ar 85 (139)
+...+.=|.++|+..+++|...|+.+.. .++.....+ |...+ .+-.+....-.....|...|.+|..+|.+|
T Consensus 3 l~~i~~~I~~~a~~e~~~I~~ea~~~~~----~i~~ea~~~a~~i~~~~~~~a~~e~~~~~~r~~s~a~~~~rr~~L~~r 78 (188)
T PRK02292 3 LETVVEDIRDEARARASEIRAEADEEAE----EIIAEAEADAEEILEDREAEAEREIEQLREQELSSAKLEAKRERLNAR 78 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456667888888888888888877653 344333333 44444 444455566666889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHhhhhhhhhcCcceeeeccCC
Q 032501 86 DDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQVSGIKLVFPLFCVFSISH 138 (139)
Q Consensus 86 ~~~i~~l~~ea~~kL~~~~~d~~~Y~~lL~~LI~Qgl~ikL~e~~v~v~~~~~ 138 (139)
+.+|+++|+.|+.+|..++.+ .|+.+|.+||.+| .+++++|+++.+
T Consensus 79 ~~~l~~v~~~a~~kL~~~~~~--~y~~~l~~li~~~-----~~~~~~i~~~~~ 124 (188)
T PRK02292 79 KEVLEDVRNQVEDEIASLDGD--KREELTKSLLDAA-----DADGVRVYSRKD 124 (188)
T ss_pred HHHHHHHHHHHHHHHHhcchh--hHHHHHHHHHHhc-----CCCCeEEEEccc
Confidence 999999999999999999876 8999999999999 468888887654
No 7
>PRK01558 V-type ATP synthase subunit E; Provisional
Probab=98.41 E-value=6e-05 Score=59.78 Aligned_cols=125 Identities=20% Similarity=0.180 Sum_probs=100.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHhhhHHHHHHH
Q 032501 3 DADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVL 82 (139)
Q Consensus 3 d~ev~~qi~~Mv~FI~qEA~EKA~EI~~kA~Eef~iEK~~lV~~ek~kI~~~yekK~kq~e~~kkI~~S~~~N~~RlkvL 82 (139)
+.+++.=+.++..=|..+|+.+|.+|-..|+++. ..|+...+.....-..+-.++++.-+++..|......|-.+|
T Consensus 2 ~~~~~~l~dki~~~~~eeA~~eA~~Ii~eA~~eA----e~Ii~eA~~eAe~i~~kAe~ea~~~~~~~~saa~l~~r~~ll 77 (198)
T PRK01558 2 QFEVKDLINKIKKDGLEEAERLANEIILEAKEEA----EEIIAKAEEEAKELKAKAEKEANDYKRHALEASRQAGRDLLI 77 (198)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888888999999999999999999998875 568888877777778888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHhhhhhhhhcCcceeeecc
Q 032501 83 QAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQVSGIKLVFPLFCVFSI 136 (139)
Q Consensus 83 ~ar~~~i~~l~~ea~~kL~~~~~d~~~Y~~lL~~LI~Qgl~ikL~e~~v~v~~~ 136 (139)
.++..+++.+.+.+...+.... |++.|..++..|+.... ..+++.|.++
T Consensus 78 ~~k~~i~~~~~~~~~~~~~~~~-~~e~~~~li~~ll~~~~----~~~~~~I~~~ 126 (198)
T PRK01558 78 SFEKSIKSLFKAALKDEVAEVY-DSNFLRELIIRVVDSWV----KGDKLEIILN 126 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhc----CCCCeeEEEC
Confidence 9999999866555555445444 77899999999988764 3455555444
No 8
>PRK01005 V-type ATP synthase subunit E; Provisional
Probab=98.21 E-value=0.0002 Score=57.62 Aligned_cols=111 Identities=14% Similarity=0.164 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHhhhHHHHHHHH
Q 032501 4 ADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQ 83 (139)
Q Consensus 4 ~ev~~qi~~Mv~FI~qEA~EKA~EI~~kA~Eef~iEK~~lV~~ek~kI~~~yekK~kq~e~~kkI~~S~~~N~~RlkvL~ 83 (139)
+.++.=+.+|..=|..+|+.+|.+|-..|..+-+ .++...+......-+.-.++++..++...|+.--..|-.+|.
T Consensus 8 ~k~q~L~dki~~eiL~eA~~eA~~Il~eAk~~Ae----~Ii~eA~~EAe~ii~~A~~eae~ek~r~~s~a~l~~R~~~l~ 83 (207)
T PRK01005 8 DKLKQICDALREETLKPAEEEAGAIVHNAKEQAK----RIIAEAQEEAEKIIRSAEETADQKLKQGESALVQAGKRSLES 83 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777888889999999999999999998874 499888888888888889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhh-ccChhHHHHHHHHHHhhhh
Q 032501 84 AQDDLVSNMMEAASKEVLNV-SRDHNSYKKLLKGLIVQVS 122 (139)
Q Consensus 84 ar~~~i~~l~~ea~~kL~~~-~~d~~~Y~~lL~~LI~Qgl 122 (139)
++.++++.+|..+.++|..- ..|| ++|..||+.-.
T Consensus 84 aKqevi~~vf~~a~~~lv~~~~~d~----~~l~~lI~~~v 119 (207)
T PRK01005 84 LKQAVENKIFRESLGEWLEHVLTDP----EVSAKLIQALV 119 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCH----HHHHHHHHHHH
Confidence 99999999999999998875 4576 67777776443
No 9
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=96.65 E-value=0.083 Score=40.79 Aligned_cols=88 Identities=19% Similarity=0.248 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHhhhHHHHHHHHHHHHHHHH
Q 032501 12 QMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSN 91 (139)
Q Consensus 12 ~Mv~FI~qEA~EKA~EI~~kA~Eef~iEK~~lV~~ek~kI~~~yekK~kq~e~~kkI~~S~~~N~~RlkvL~ar~~~i~~ 91 (139)
.=..-+..+|+.+|.+|...|..+-+.++..++.+-+.......++-...++.+ .+--+...|.+++++
T Consensus 77 ~e~e~~L~~Ar~eA~~Ii~~A~~eAe~~~~~ii~~A~~ea~~~~~~a~~~ie~E-----------k~~a~~elk~eii~~ 145 (167)
T PRK08475 77 EDALKKLEEAKEKAELIVETAKKEAYILTQKIEKQTKDDIENLIKSFEELMEFE-----------VRKMEREVVEEVLNE 145 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHH
Confidence 334567788999999999999999998888888877777766665555555444 445578889999999
Q ss_pred HHHHHHHHHHhhccChhHHHHHHH
Q 032501 92 MMEAASKEVLNVSRDHNSYKKLLK 115 (139)
Q Consensus 92 l~~ea~~kL~~~~~d~~~Y~~lL~ 115 (139)
+|+. +|.++ |++.|-.++.
T Consensus 146 ~~~~---~~~~l--~~~~y~~~~~ 164 (167)
T PRK08475 146 LFES---KKVSL--NQQEYVNILL 164 (167)
T ss_pred HHHh---hhcCC--CHHHHHHHHh
Confidence 9998 66655 4557888764
No 10
>TIGR02499 HrpE_YscL_not type III secretion apparatus protein, HrpE/YscL family. This model is related to Pfam model pfam06188, but is broader. pfam06188 describes HrpE-like proteins, components of bacterial type III secretion systems primarily in bacteria that infect plants. This model includes also the homologous proteins of animal pathogens, such as YscL of Yersinia pestis. This model excludes the related protein FliH of the bacterial flagellar apparatus (see pfam02108)
Probab=96.37 E-value=0.27 Score=36.69 Aligned_cols=108 Identities=16% Similarity=0.085 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHhhhHHHHHHHHH-HHHHHHHH
Q 032501 14 VRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQA-QDDLVSNM 92 (139)
Q Consensus 14 v~FI~qEA~EKA~EI~~kA~Eef~iEK~~lV~~ek~kI~~~yekK~kq~e~~kkI~~S~~~N~~RlkvL~a-r~~~i~~l 92 (139)
-.=|..+|+.+|+.|...|.++++-.+..-.++....-..++....-...... -+.+.. ..+++ .+
T Consensus 15 A~~il~~A~~~a~~i~~~A~~~~e~~~~~g~~~G~~~g~~e~~~~~~~~~~~~------------~~~~~~~e~~l~-~l 81 (166)
T TIGR02499 15 AQAILAAARQRAEAILADAEEEAEASRQLGYEQGLEQFWQEAAAQLAEWQQEA------------EQLEASLEERLA-EL 81 (166)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHH-HH
Confidence 44578899999999999999999888777776666555555544333221111 111111 22333 33
Q ss_pred HHHHHHHHHhhccChhHHHHHHHHHHhhhhhhhhcCcceeeeccCC
Q 032501 93 MEAASKEVLNVSRDHNSYKKLLKGLIVQVSGIKLVFPLFCVFSISH 138 (139)
Q Consensus 93 ~~ea~~kL~~~~~d~~~Y~~lL~~LI~Qgl~ikL~e~~v~v~~~~~ 138 (139)
.-.+-+++..-.. .+.++..++.+++.---..+.|+|+++.+
T Consensus 82 ~~~~~~kil~~~~----~~e~l~~lv~~al~~~~~~~~v~I~v~P~ 123 (166)
T TIGR02499 82 VLQALEQILGEYD----EPERLVRLLRQLLRAVANQGRLTLRVHPE 123 (166)
T ss_pred HHHHHHHHhCCCC----CHHHHHHHHHHHHHhCCCCCceEEEECHH
Confidence 3333333333333 34677777777773333458899988764
No 11
>PF06188 HrpE: HrpE/YscL/FliH and V-type ATPase subunit E; InterPro: IPR009335 This family consists of several bacterial HrpE proteins, which are believed to function on the type III secretion system, specifically the secretion of HrpZ (harpinPss) []. This family also includes V-type proton ATPase subunit E proteins. This subunit appears to form a tight interaction with subunit G in the F0 complex. Subunits E and G may act together as stators to prevent certain subunits from rotating with the central rotary element []. PF01991 from PFAM also contains V-type ATPase subunit E proteins. There is an evolutionary link between type III secretion systems and membrane-associated proton translocating ATPases [].
Probab=95.53 E-value=0.93 Score=35.86 Aligned_cols=109 Identities=18% Similarity=0.244 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHH
Q 032501 14 VRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMM 93 (139)
Q Consensus 14 v~FI~qEA~EKA~EI~~kA~Eef~iEK~~lV~~ek~kI~~~yekK~kq~e~~kkI~~S~~~N~~RlkvL~ar~~~i~~l~ 93 (139)
..=|...|+.+|+.|-..|++++.. ++.+....+.+.|....... -...-..|-.+...-.+.+..++
T Consensus 32 a~~IL~~A~~qA~~Il~~Ae~eAe~----l~~~a~e~a~~~~~q~a~~l--------l~~~~~~~e~l~~~l~~~~~~ll 99 (191)
T PF06188_consen 32 AREILEDARQQAEQILQQAEEEAEA----LLEQAYEQAEAQFWQQANAL--------LQEWQQQREQLLQQLEEQAEELL 99 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678999999999999999999854 45544555555554332211 11111334556666677888889
Q ss_pred HHHHHHHHhhccChhHHHHHHHHHHhhhhhhhhcCcceeeeccCC
Q 032501 94 EAASKEVLNVSRDHNSYKKLLKGLIVQVSGIKLVFPLFCVFSISH 138 (139)
Q Consensus 94 ~ea~~kL~~~~~d~~~Y~~lL~~LI~Qgl~ikL~e~~v~v~~~~~ 138 (139)
.+|-.+|.+-..++.++..++..|..+- ..+.+.+|.+.++
T Consensus 100 ~~al~~lL~e~~~~qrv~aLlr~l~~~~----~~~~~~tL~~hP~ 140 (191)
T PF06188_consen 100 SQALERLLDETPDQQRVAALLRQLLASQ----RQESEATLRCHPD 140 (191)
T ss_pred HHHHHHHHHcCCchHHHHHHHHHHHHhc----ccccceEEEECHH
Confidence 9999999888888888998888886543 3667777776543
No 12
>PRK09098 type III secretion system protein HrpB; Validated
Probab=94.22 E-value=2.6 Score=34.45 Aligned_cols=116 Identities=16% Similarity=0.080 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHhhhHHHHHHHHH
Q 032501 5 DVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQA 84 (139)
Q Consensus 5 ev~~qi~~Mv~FI~qEA~EKA~EI~~kA~Eef~iEK~~lV~~ek~kI~~~yekK~kq~e~~kkI~~S~~~N~~RlkvL~a 84 (139)
++-..-+..-.=|..+|++.|++|...|.++|+..+.+=.+....+-..+|..+.-. .....+..+.+ .
T Consensus 43 ~ila~Ar~~A~~Il~~A~~~A~~I~~~A~~e~e~~~~~Gy~eG~~~a~~e~~~~~~~--------~~~~~~~~~~~---~ 111 (233)
T PRK09098 43 AVLAAARARAERIVAEARAQAEAILEAARREADRSARRGYAAGLRQALAEWHARGAD--------HAFAERRAARR---M 111 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHH---H
Confidence 344455666667888999999999999999998766555555544444333322222 11112222222 4
Q ss_pred HHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHhhhhhhhh--cCcceeeeccCC
Q 032501 85 QDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQVSGIKL--VFPLFCVFSISH 138 (139)
Q Consensus 85 r~~~i~~l~~ea~~kL~~~~~d~~~Y~~lL~~LI~Qgl~ikL--~e~~v~v~~~~~ 138 (139)
++++++=++.-+++-+... || ..|-..+.+++ -.+ ..+.|+|+++.+
T Consensus 112 e~~Lv~lv~~~v~kiv~~~--d~----~~ll~~v~~al-~~~~~~~~~v~IrV~P~ 160 (233)
T PRK09098 112 RERLAEIVAAAVEQIVLGE--DR----AALFARAAQTL-ERVVDGASYLTVRVHPA 160 (233)
T ss_pred HHHHHHHHHHHHHHHHHhc--CH----HHHHHHHHHHH-HHHhccCCcEEEEECHH
Confidence 7788888888888777643 44 45556777888 554 357899998864
No 13
>PRK06937 type III secretion system protein; Reviewed
Probab=91.82 E-value=5.3 Score=31.47 Aligned_cols=106 Identities=15% Similarity=0.093 Sum_probs=62.4
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHH
Q 032501 17 IRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAA 96 (139)
Q Consensus 17 I~qEA~EKA~EI~~kA~Eef~iEK~~lV~~ek~kI~~~yekK~kq~e~~kkI~~S~~~N~~RlkvL~ar~~~i~~l~~ea 96 (139)
|..+|++.|.+|...|+++|+-.+..=.+.....-..++. .++..+ ..+..--.-....++++=++.-|
T Consensus 35 il~~A~~~A~~i~~~A~~~~e~~~~~Gy~~G~~~a~~e~~---------e~l~~~--~~~~~~~~~~~e~~l~~Lvl~ia 103 (204)
T PRK06937 35 LVEAARQRAEEIEAEAQEVYEQQKQLGYQAGLDEARTEQA---------ELILET--VLQCQEFYRGVEQQMSEVVLEAV 103 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 6678999999999999999976655444444332222221 222222 11122122344556666555555
Q ss_pred HHHHHhhccChhHHHHHHHHHHhhhhhhhhcCcceeeeccCC
Q 032501 97 SKEVLNVSRDHNSYKKLLKGLIVQVSGIKLVFPLFCVFSISH 138 (139)
Q Consensus 97 ~~kL~~~~~d~~~Y~~lL~~LI~Qgl~ikL~e~~v~v~~~~~ 138 (139)
++=|... .+ +.++..++.+++.---..+.|+|+++++
T Consensus 104 ~kil~~~-~~----~e~i~~lv~~al~~l~~~~~v~I~V~P~ 140 (204)
T PRK06937 104 RKILNDY-DD----VERTLQVVREALALVSNQKQVVVRVNPD 140 (204)
T ss_pred HHHHhcc-Cc----HHHHHHHHHHHHHhcccCCeEEEEECHH
Confidence 5544432 22 4788889999983333458899998764
No 14
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=90.88 E-value=7.6 Score=31.51 Aligned_cols=91 Identities=11% Similarity=0.179 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHH
Q 032501 16 FIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEA 95 (139)
Q Consensus 16 FI~qEA~EKA~EI~~kA~Eef~iEK~~lV~~ek~kI~~~yekK~kq~e~~kkI~~S~~~N~~RlkvL~ar~~~i~~l~~e 95 (139)
-...+|+..+.+|...|..+-..++..++.+-+..+....++....++.++.-....+ |.++.+-.+.-
T Consensus 64 ~~l~~a~~ea~~i~~~A~~eA~~~~~~i~~~A~~ea~~~~~~a~~~ie~E~~~a~~~l-----------~~ei~~la~~~ 132 (246)
T TIGR03321 64 EKNEELDQQREVLLTKAKEEAQAERQRLLDEAREEADEIREKWQEALRREQAALSDEL-----------RRRTGAEVFAI 132 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHH
Confidence 3566789999999999999999999999999999998888888888887776665544 44445555555
Q ss_pred HHHHHHhhccChhHHHHHHHHHH
Q 032501 96 ASKEVLNVSRDHNSYKKLLKGLI 118 (139)
Q Consensus 96 a~~kL~~~~~d~~~Y~~lL~~LI 118 (139)
|.+-|.+.. |++..+.++...|
T Consensus 133 A~kil~~~~-d~~~~~~lid~~i 154 (246)
T TIGR03321 133 ARKVLTDLA-DTDLEERMVDVFV 154 (246)
T ss_pred HHHHHHHhc-ChHHHHHHHHHHH
Confidence 555555443 3334444444444
No 15
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=89.42 E-value=11 Score=31.02 Aligned_cols=66 Identities=12% Similarity=0.198 Sum_probs=51.2
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHhhhHHHHHHHH
Q 032501 18 RQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQ 83 (139)
Q Consensus 18 ~qEA~EKA~EI~~kA~Eef~iEK~~lV~~ek~kI~~~yekK~kq~e~~kkI~~S~~~N~~RlkvL~ 83 (139)
..+|+.++.+|-..|..+-+-++..++.+-+..+....++....++.++.-....+.++..--.+.
T Consensus 66 l~~a~~ea~~ii~~A~~eA~~~~~~il~~A~~ea~~~~~~a~~~ie~Ek~~a~~~L~~~v~~la~~ 131 (250)
T PRK14474 66 QQSLEQQRASFMAQAQEAADEQRQHLLNEAREDVATARDEWLEQLEREKQEFFKALQQQTGQQMVK 131 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888888999999999999999999999988888888888888888777766554444433333
No 16
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=88.79 E-value=9 Score=29.34 Aligned_cols=92 Identities=10% Similarity=0.139 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHH
Q 032501 15 RFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMME 94 (139)
Q Consensus 15 ~FI~qEA~EKA~EI~~kA~Eef~iEK~~lV~~ek~kI~~~yekK~kq~e~~kkI~~S~~~N~~RlkvL~ar~~~i~~l~~ 94 (139)
.-...+|+.+|.+|...|..+-+.++..++.+-...+....+.....++.+++-... ..|.++.+-.+.
T Consensus 77 ~~~L~~a~~ea~~ii~~a~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~-----------~l~~qi~~la~~ 145 (174)
T PRK07352 77 QQKLAQAQQEAERIRADAKARAEAIRAEIEKQAIEDMARLKQTAAADLSAEQERVIA-----------QLRREAAELAIA 145 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHH
Confidence 345678888889999999988888888888877777777776666666666554433 345566667777
Q ss_pred HHHHHHHhhccChhHHHHHHHHHH
Q 032501 95 AASKEVLNVSRDHNSYKKLLKGLI 118 (139)
Q Consensus 95 ea~~kL~~~~~d~~~Y~~lL~~LI 118 (139)
-|.+-|..-. |++....++..+|
T Consensus 146 ~A~kil~~~l-~~~~~~~li~~~i 168 (174)
T PRK07352 146 KAESQLPGRL-DEDAQQRLIDRSI 168 (174)
T ss_pred HHHHHHHhHc-CHHHHHHHHHHHH
Confidence 7777776655 4445666666655
No 17
>TIGR03825 FliH_bacil flagellar assembly protein FliH. This bacillus clade of FliH proteins is not found by the Pfam FliH model pfam02108, but is closely related to the sequences identified by that model. Sequences identified by this model are observed in flagellar operons in an analogous position relative to other flagellar operon genes.
Probab=87.72 E-value=14 Score=30.17 Aligned_cols=124 Identities=15% Similarity=0.190 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHH---HHHHHHHHHHHHHHHHHH-HHHHHHHHHh--hHHHHHHHHHhH-hhhHHH---H
Q 032501 10 IQQMVRFIRQEAEEKANEISVSA---EEEFNIEKLQLVEAEKKK-IRQEYERKEK--QVEIRKKIEYSM-QLNASR---I 79 (139)
Q Consensus 10 i~~Mv~FI~qEA~EKA~EI~~kA---~Eef~iEK~~lV~~ek~k-I~~~yekK~k--q~e~~kkI~~S~-~~N~~R---l 79 (139)
.+.--+-|..+|+..|++|...+ ..++..|..++++..+.. -.+-|..=.. ..+....|+... .+..++ .
T Consensus 49 Ar~eA~~Ii~~A~~~a~~~~~~~~~~~~~~~~e~e~~~e~A~~eGy~eG~~~G~~e~~~~~~~~i~~a~~i~~~a~~~~~ 128 (255)
T TIGR03825 49 AEAEAAQIIEQAEAQAAAIREQIEQERAQWEEERERLIQEAKQEGYEAGFQAGESEALSIYQSTIDEANAIVEEAKDDYE 128 (255)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555556666666666555 355566666666555443 1111111111 111222222221 122332 2
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHhh-ccChhHHHHHHHHHHhhhhhhhhcC-cceeeeccCC
Q 032501 80 KVLQ-AQDDLVSNMMEAASKEVLNV-SRDHNSYKKLLKGLIVQVSGIKLVF-PLFCVFSISH 138 (139)
Q Consensus 80 kvL~-ar~~~i~~l~~ea~~kL~~~-~~d~~~Y~~lL~~LI~Qgl~ikL~e-~~v~v~~~~~ 138 (139)
..+. .+.++++=.+.-|++=+... ..|+ ..+..||-+++ -.+.. +.|+|+++++
T Consensus 129 ~~l~~~e~el~~La~~iAeKIi~~el~~~~----e~i~~lv~~al-~~l~~~~~i~I~v~p~ 185 (255)
T TIGR03825 129 EKIESAQPLIIELACALAEKVIGVSLAEDK----NAFQALVRQVL-SEVREFDEVSIYVHPH 185 (255)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccCH----HHHHHHHHHHH-HhccCCCcEEEEECHH
Confidence 2222 34555555565555555543 3454 46788888888 55554 7899988864
No 18
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=87.03 E-value=12 Score=28.90 Aligned_cols=92 Identities=17% Similarity=0.216 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHH
Q 032501 15 RFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMME 94 (139)
Q Consensus 15 ~FI~qEA~EKA~EI~~kA~Eef~iEK~~lV~~ek~kI~~~yekK~kq~e~~kkI~~S~~~N~~RlkvL~ar~~~i~~l~~ 94 (139)
.-+..+|+..|.+|...|..+...++..++.+-+..+......-...++.++.-+.. ..|.++.+-.++
T Consensus 82 e~~L~~A~~ea~~ii~~A~~~ae~~~~~il~~A~~ea~~~~~~a~~~ie~Ek~~a~~-----------~l~~ei~~lav~ 150 (184)
T CHL00019 82 RARLRQAELEADEIRVNGYSEIEREKENLINQAKEDLERLENYKNETIRFEQQRAIN-----------QVRQQVFQLALQ 150 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHH
Confidence 347788999999999999999999999999888888887777777777766665543 345566666777
Q ss_pred HHHHHHHhhccChhHHHHHHHHHH
Q 032501 95 AASKEVLNVSRDHNSYKKLLKGLI 118 (139)
Q Consensus 95 ea~~kL~~~~~d~~~Y~~lL~~LI 118 (139)
-|.+-|.+.. |++....++...|
T Consensus 151 ~A~kil~~~l-d~~~~~~lid~~i 173 (184)
T CHL00019 151 RALGTLNSCL-NNELHLRTINANI 173 (184)
T ss_pred HHHHHHHhHc-CHHHHHHHHHHHH
Confidence 7777777655 5555555555554
No 19
>COG1317 FliH Flagellar biosynthesis/type III secretory pathway protein [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=86.23 E-value=17 Score=29.68 Aligned_cols=122 Identities=11% Similarity=0.068 Sum_probs=75.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH--HHHhHhhhHHHHH
Q 032501 3 DADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKK--IEYSMQLNASRIK 80 (139)
Q Consensus 3 d~ev~~qi~~Mv~FI~qEA~EKA~EI~~kA~Eef~iEK~~lV~~ek~kI~~~yekK~kq~e~~kk--I~~S~~~N~~Rlk 80 (139)
+++....+..+..++...|.+-++.|...+++.|+.-+..= |+.=.++.....+ =..+++++.....
T Consensus 39 ~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~e~~eeg~q~G-----------~~eG~~~g~~~~~~~e~~~~li~~~~~~ 107 (234)
T COG1317 39 EEELEQALEAKEEELESAAQELQEGIEEGAREGYEEGFQLG-----------YEEGFEEGQEEGRVLERLAKLIAEFQAE 107 (234)
T ss_pred CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788888899999999999999999999976533322 2222222221111 1223333332222
Q ss_pred HHH----HHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHhhhhhhhhcCc-ceeeeccCC
Q 032501 81 VLQ----AQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQVSGIKLVFP-LFCVFSISH 138 (139)
Q Consensus 81 vL~----ar~~~i~~l~~ea~~kL~~~~~d~~~Y~~lL~~LI~Qgl~ikL~e~-~v~v~~~~~ 138 (139)
+-. ...++++-++.-|++=+...... -+..|-.+|.++|..-.+.+ .|++++|.+
T Consensus 108 ~~~~~~~~e~qLv~lvl~ia~~Vi~~~~~~---~~~~ll~~v~e~L~~~~~~~~~i~l~VnP~ 167 (234)
T COG1317 108 LEALKEVVEKQLVQLVLEIARKVIGKELEL---DPEALLAAVREALEEVPLFAAAITLRVNPD 167 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHhc---CHHHHHHHHHHHHHhccccccCeEEEECHH
Confidence 222 34456666666666655554433 34789999999996666777 899999864
No 20
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=86.13 E-value=16 Score=29.18 Aligned_cols=94 Identities=20% Similarity=0.138 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHH
Q 032501 14 VRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMM 93 (139)
Q Consensus 14 v~FI~qEA~EKA~EI~~kA~Eef~iEK~~lV~~ek~kI~~~yekK~kq~e~~kkI~~S~~~N~~RlkvL~ar~~~i~~l~ 93 (139)
..-..++|+.+|.+|...|.++-+.++..++..-+..+...-+.....++.+++-+.. ..|.++.+-..
T Consensus 105 ~e~~L~~A~~eA~~Ii~~A~~eAe~~~e~i~~~A~~eae~ii~~A~~~Ie~Ek~~a~~-----------~Lk~ei~~lAv 173 (205)
T PRK06231 105 AKQRHENALAQAKEIIDQANYEALQLKSELEKEANRQANLIIFQARQEIEKERRELKE-----------QLQKESVELAM 173 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHH
Confidence 3456678888888999999988888888888876666665555555555555444322 22344444444
Q ss_pred HHHHHHHHhhccChhHHHHHHHHHHh
Q 032501 94 EAASKEVLNVSRDHNSYKKLLKGLIV 119 (139)
Q Consensus 94 ~ea~~kL~~~~~d~~~Y~~lL~~LI~ 119 (139)
.-|.+-|.+-. |+...+.++...|-
T Consensus 174 ~iA~kiL~k~l-d~~~~~~lI~~~i~ 198 (205)
T PRK06231 174 LAAEELIKKKV-DREDDDKLVDEFIR 198 (205)
T ss_pred HHHHHHHHhhC-CHHHHHHHHHHHHH
Confidence 44555444433 55567777777663
No 21
>PRK03963 V-type ATP synthase subunit E; Provisional
Probab=85.85 E-value=14 Score=28.50 Aligned_cols=97 Identities=15% Similarity=0.221 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhH--------hhhH
Q 032501 5 DVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSM--------QLNA 76 (139)
Q Consensus 5 ev~~qi~~Mv~FI~qEA~EKA~EI~~kA~Eef~iEK~~lV~~ek~kI~~~yekK~kq~e~~kkI~~S~--------~~N~ 76 (139)
++-.+.+.=.+=|..+|+.+|++|...|.++.+.+...++...+..+..+-.+....+..+.+..... +.+.
T Consensus 10 ~il~~A~~ea~~il~~A~~~a~~i~~~a~~~a~~~~~~i~~~a~~~ae~ek~r~~s~a~~e~r~~~l~ar~el~~~v~~~ 89 (198)
T PRK03963 10 EINREAEQKIEYILEEAQKEAEKIKEEARKRAESKAEWILRKAKTQAELEKQRIIANAKLEVRRKRLAVQEELISEVLEA 89 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556677788888888888888888888888888888777777766666655555555544433 3444
Q ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHH
Q 032501 77 SRIKVLQA----QDDLVSNMMEAASKEVL 101 (139)
Q Consensus 77 ~RlkvL~a----r~~~i~~l~~ea~~kL~ 101 (139)
++-++.+. -..+|..++.++-..|.
T Consensus 90 a~~~l~~~~~~~Y~~~l~~li~~a~~~l~ 118 (198)
T PRK03963 90 VRERLAELPEDEYFETLKALTKEAVEELG 118 (198)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHhC
Confidence 55444432 23567777777777764
No 22
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=84.57 E-value=15 Score=27.70 Aligned_cols=94 Identities=13% Similarity=0.129 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHH
Q 032501 14 VRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMM 93 (139)
Q Consensus 14 v~FI~qEA~EKA~EI~~kA~Eef~iEK~~lV~~ek~kI~~~yekK~kq~e~~kkI~~S~~~N~~RlkvL~ar~~~i~~l~ 93 (139)
..-...+|+.+|.+|...|..+...++..++..-...+....+.-..+++.++.-.... .|.++.+-.+
T Consensus 65 ~e~~l~~A~~ea~~ii~~A~~~a~~~~~~~l~~A~~ea~~~~~~a~~~I~~ek~~a~~~-----------L~~~i~~la~ 133 (164)
T PRK14473 65 YEAELAKARQEAAKIVAQAQERARAQEAEIIAQARREAEKIKEEARAQAEQERQRMLSE-----------LKSQIADLVT 133 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHH
Confidence 34566788888999999999998888888888888888777777777777666555443 3444555555
Q ss_pred HHHHHHHHhhccChhHHHHHHHHHHh
Q 032501 94 EAASKEVLNVSRDHNSYKKLLKGLIV 119 (139)
Q Consensus 94 ~ea~~kL~~~~~d~~~Y~~lL~~LI~ 119 (139)
.-|.+=|..-. |++.+..++...|-
T Consensus 134 ~~a~kil~~~l-~~~~~~~li~~~i~ 158 (164)
T PRK14473 134 LTASRVLGAEL-QARGHDALIAESLA 158 (164)
T ss_pred HHHHHHHHhHc-CHHHHHHHHHHHHH
Confidence 55555554433 55667777776663
No 23
>PRK01194 V-type ATP synthase subunit E; Provisional
Probab=84.16 E-value=18 Score=28.29 Aligned_cols=96 Identities=14% Similarity=0.177 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh--------HhhhH
Q 032501 5 DVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYS--------MQLNA 76 (139)
Q Consensus 5 ev~~qi~~Mv~FI~qEA~EKA~EI~~kA~Eef~iEK~~lV~~ek~kI~~~yekK~kq~e~~kkI~~S--------~~~N~ 76 (139)
++.++.++=..-|..+|+.+|++|...|+++.+-.+..+.......+...+++-...+.++.|-..- ...+.
T Consensus 9 ~I~~ea~~~a~~I~~eA~~~aeei~~ea~~~a~~~~~~~~~k~~~e~~~~~~riis~A~Le~R~~~L~aree~I~~v~~~ 88 (185)
T PRK01194 9 DIEKSREEKKKEINDEYSKRIEKLEKECDSKIQSIKEYYEKKMRAEISRLKKSIIDKANIEARSIKREKRREILKDYLDI 88 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777888999999999999999999999999999999999988888888888888777665432 23444
Q ss_pred HHHHHH--H---HHHHHHHHHHHHHHHHH
Q 032501 77 SRIKVL--Q---AQDDLVSNMMEAASKEV 100 (139)
Q Consensus 77 ~RlkvL--~---ar~~~i~~l~~ea~~kL 100 (139)
++-++- . ...++|..++..+-..|
T Consensus 89 a~e~L~~l~~~~~Y~~~L~~LI~~a~~~l 117 (185)
T PRK01194 89 AYEHLMNITKSKEYDSILNKMIEVAIKTL 117 (185)
T ss_pred HHHHHHcccCCchHHHHHHHHHHHHHHhc
Confidence 444443 2 34566777777665543
No 24
>PRK08404 V-type ATP synthase subunit H; Validated
Probab=83.30 E-value=14 Score=26.42 Aligned_cols=65 Identities=18% Similarity=0.112 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHhhhHHHHH
Q 032501 16 FIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIK 80 (139)
Q Consensus 16 FI~qEA~EKA~EI~~kA~Eef~iEK~~lV~~ek~kI~~~yekK~kq~e~~kkI~~S~~~N~~Rlk 80 (139)
=+..+|+.++.+|-..|..+-+-+...++.+-+......-++-.+.++..+.-..+.+.++..-=
T Consensus 17 ~~L~~A~~Ea~~Ii~~Ak~~A~k~~~eii~eA~~eA~~ile~Ak~eie~Ek~~a~~elk~eia~L 81 (103)
T PRK08404 17 ERIEKAKEEAKKIIRKAKEEAKKIEEEIIKKAEEEAQKLIEKKKKEGEEEAKKILEEGEKEIEEL 81 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777777777777777777777777777666666666666666666555555544444333
No 25
>TIGR02926 AhaH ATP synthase archaeal, H subunit. he A1/A0 ATP synthase is homologous to the V-type (V1/V0, vacuolar) ATPase, but functions in the ATP synthetic direction as does the F1/F0 ATPase of bacteria. The hydrophilic A1 "stalk" complex (AhaABCDEFG) is the site of ATP generation and is coupled to the membrane-embedded proton translocating A0 complex. It is unclear precisely where AhaH fits into these complexes.
Probab=81.75 E-value=14 Score=25.22 Aligned_cols=52 Identities=23% Similarity=0.245 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 032501 11 QQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQV 62 (139)
Q Consensus 11 ~~Mv~FI~qEA~EKA~EI~~kA~Eef~iEK~~lV~~ek~kI~~~yekK~kq~ 62 (139)
+.=...|..+|...|+.|...+..+-..+..+++..-+..|..+..+-..++
T Consensus 19 ~~ea~~Ii~~A~~~A~~~~~~a~~~A~~ea~~ii~~Ak~ei~~e~~~a~~e~ 70 (85)
T TIGR02926 19 EEERKQRIAEAREEARELLEEAEEEASKLGEEIIKEAEEEIEKEAEKIREEG 70 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334556666777777777777777777777777777777666665544443
No 26
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=79.54 E-value=45 Score=29.65 Aligned_cols=94 Identities=15% Similarity=0.083 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHH
Q 032501 14 VRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMM 93 (139)
Q Consensus 14 v~FI~qEA~EKA~EI~~kA~Eef~iEK~~lV~~ek~kI~~~yekK~kq~e~~kkI~~S~~~N~~RlkvL~ar~~~i~~l~ 93 (139)
..-+..+|+.+|.+|-..|.++-.-++..++.+-...+....+.-..+++.++.-... ..|.++.+-.+
T Consensus 58 ~e~~L~~Ak~ea~~Ii~~A~~~A~~~~~~~~~~A~~ea~~i~~~a~~~Ie~ek~~a~~-----------elr~ei~~lAv 126 (445)
T PRK13428 58 HTKAVEDAKAEAARVVEEAREDAERIAEQLRAQADAEAERIKVQGARQVQLLRAQLTR-----------QLRLELGHESV 126 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHH
Confidence 3445667777777777777777777777776666666665555555555555443322 23455555666
Q ss_pred HHHHHHHHhhccChhHHHHHHHHHH
Q 032501 94 EAASKEVLNVSRDHNSYKKLLKGLI 118 (139)
Q Consensus 94 ~ea~~kL~~~~~d~~~Y~~lL~~LI 118 (139)
.-|.+-|.+-..|++..+.++...|
T Consensus 127 ~~A~kil~~~l~d~~~~~~lId~~i 151 (445)
T PRK13428 127 RQAGELVRNHVADPAQQSATVDRFL 151 (445)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 6666666654444433445555554
No 27
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=77.88 E-value=29 Score=26.55 Aligned_cols=93 Identities=20% Similarity=0.265 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHH
Q 032501 15 RFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMME 94 (139)
Q Consensus 15 ~FI~qEA~EKA~EI~~kA~Eef~iEK~~lV~~ek~kI~~~yekK~kq~e~~kkI~~S~~~N~~RlkvL~ar~~~i~~l~~ 94 (139)
.-...+|+.+|.+|...|..+-.-++..++..-...+...-+.....++.++.-.... .|.++.+-.+.
T Consensus 74 e~~l~~a~~ea~~ii~~A~~ea~~~~~~~~~~A~~ea~~~~~~a~~~ie~e~~~a~~e-----------l~~ei~~lA~~ 142 (173)
T PRK13460 74 EARLNSAKDEANAIVAEAKSDALKLKNKLLEETNNEVKAQKDQAVKEIELAKGKALSQ-----------LQNQIVEMTIT 142 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHH
Confidence 3456788888889999999988888888888777777766666666666555444332 23444555555
Q ss_pred HHHHHHHhhccChhHHHHHHHHHHh
Q 032501 95 AASKEVLNVSRDHNSYKKLLKGLIV 119 (139)
Q Consensus 95 ea~~kL~~~~~d~~~Y~~lL~~LI~ 119 (139)
-|.+-|..-. |++....++...|-
T Consensus 143 ~a~kil~~~l-~~~~~~~lid~~i~ 166 (173)
T PRK13460 143 IASKVLEKQL-KKEDYKAFIETELA 166 (173)
T ss_pred HHHHHHHHHC-CHHHHHHHHHHHHH
Confidence 5555555544 55556666666553
No 28
>COG2811 NtpF Archaeal/vacuolar-type H+-ATPase subunit H [Energy production and conversion]
Probab=76.79 E-value=27 Score=25.73 Aligned_cols=43 Identities=33% Similarity=0.354 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032501 15 RFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYER 57 (139)
Q Consensus 15 ~FI~qEA~EKA~EI~~kA~Eef~iEK~~lV~~ek~kI~~~yek 57 (139)
.=|..+|.++|.+|-.+|+.+..-.+..++...+..+..+-.+
T Consensus 31 ~~~i~eAr~eareiieeaE~eA~~~~~e~l~~~~ee~e~ea~e 73 (108)
T COG2811 31 EQIIKEAREEAREIIEEAEEEAEKLAQEILEEAREEAEEEAEE 73 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466788888888888888888777777777666666554433
No 29
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=76.71 E-value=26 Score=25.47 Aligned_cols=43 Identities=14% Similarity=0.123 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032501 16 FIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERK 58 (139)
Q Consensus 16 FI~qEA~EKA~EI~~kA~Eef~iEK~~lV~~ek~kI~~~yekK 58 (139)
-...+|+..|.+|...|..+-+.++..++..-...+....+..
T Consensus 64 ~~L~~a~~ea~~i~~~a~~~a~~~~~~~~~~a~~ea~~~~~~a 106 (140)
T PRK07353 64 QQLASARKQAQAVIAEAEAEADKLAAEALAEAQAEAQASKEKA 106 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456667777777777777766666666665555444433333
No 30
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=76.65 E-value=30 Score=26.07 Aligned_cols=53 Identities=17% Similarity=0.086 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 032501 15 RFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKK 67 (139)
Q Consensus 15 ~FI~qEA~EKA~EI~~kA~Eef~iEK~~lV~~ek~kI~~~yekK~kq~e~~kk 67 (139)
.-...+|+..|.+|...|.++-+-++..++..-+.......+.-..+++.++.
T Consensus 80 e~~L~~A~~ea~~ii~~A~~~a~~~~~~~~~~A~~ea~~~~~~a~~~i~~ek~ 132 (156)
T CHL00118 80 EQELSKARKEAQLEITQSQKEAKEIVENELKQAQKYIDSLLNEATKQLEAQKE 132 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777777777777777777766666666665555555554444444433
No 31
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=75.47 E-value=30 Score=25.56 Aligned_cols=93 Identities=15% Similarity=0.084 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHH
Q 032501 14 VRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMM 93 (139)
Q Consensus 14 v~FI~qEA~EKA~EI~~kA~Eef~iEK~~lV~~ek~kI~~~yekK~kq~e~~kkI~~S~~~N~~RlkvL~ar~~~i~~l~ 93 (139)
..-...+|+.++.+|...|..+-.-++..++.+-...+....+.-...++.++.-.. -..+..+.+-.+
T Consensus 61 ~~~~l~~a~~ea~~i~~~a~~ea~~~~~~~~~~a~~ea~~~~~~a~~~i~~e~~~a~-----------~~l~~~~~~lA~ 129 (156)
T PRK05759 61 YEAQLAEARAEAAEIIEQAKKRAAQIIEEAKAEAEAEAARIKAQAQAEIEQERKRAR-----------EELRKQVADLAV 129 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHH
Confidence 445667788888888888888888888887777777776666666665555544432 234455555566
Q ss_pred HHHHHHHHhhccChhHHHHHHHHHH
Q 032501 94 EAASKEVLNVSRDHNSYKKLLKGLI 118 (139)
Q Consensus 94 ~ea~~kL~~~~~d~~~Y~~lL~~LI 118 (139)
.-|.+-|.... |++....++...|
T Consensus 130 ~~a~k~l~~~~-d~~~~~~~i~~~i 153 (156)
T PRK05759 130 AGAEKILGREL-DAAAQSDLIDKLI 153 (156)
T ss_pred HHHHHHHHhHc-CHHHHHHHHHHHH
Confidence 66655555543 5445555555554
No 32
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=74.22 E-value=38 Score=26.10 Aligned_cols=89 Identities=19% Similarity=0.208 Sum_probs=41.8
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 032501 18 RQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAAS 97 (139)
Q Consensus 18 ~qEA~EKA~EI~~kA~Eef~iEK~~lV~~ek~kI~~~yekK~kq~e~~kkI~~S~~~N~~RlkvL~ar~~~i~~l~~ea~ 97 (139)
..+|+.+|.+|...|..+-..+...+..+-...+....+....+++.++.-.... .|.++.+-.++-|.
T Consensus 88 L~~A~~ea~~Ii~~A~~~a~~~~e~~~~~a~~ea~~~~~~A~~~I~~ek~~a~~~-----------l~~~i~~lA~~~a~ 156 (184)
T PRK13455 88 QREVQEQADRIVAAAKDEAQAAAEQAKADLEASIARRLAAAEDQIASAEAAAVKA-----------VRDRAVSVAVAAAA 156 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHH
Confidence 4455666666666666665555444444444444433333333333333222221 23334444444444
Q ss_pred HHHHhhccChhHHHHHHHHHH
Q 032501 98 KEVLNVSRDHNSYKKLLKGLI 118 (139)
Q Consensus 98 ~kL~~~~~d~~~Y~~lL~~LI 118 (139)
+-|..-. |+.....++...|
T Consensus 157 kil~~~l-~~~~~~~lid~~i 176 (184)
T PRK13455 157 DVIAKQM-TAADANALIDEAI 176 (184)
T ss_pred HHHhhcC-CHHHHHHHHHHHH
Confidence 4444433 5555666666555
No 33
>PRK02292 V-type ATP synthase subunit E; Provisional
Probab=72.90 E-value=40 Score=25.84 Aligned_cols=85 Identities=25% Similarity=0.198 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHhhhHHHHHHHHH----
Q 032501 9 QIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQA---- 84 (139)
Q Consensus 9 qi~~Mv~FI~qEA~EKA~EI~~kA~Eef~iEK~~lV~~ek~kI~~~yekK~kq~e~~kkI~~S~~~N~~RlkvL~a---- 84 (139)
+.++-+.=|..+|+.+|++|...+.++..-+...+.............++ .-..++--.+.+.+.++-++...
T Consensus 24 ea~~~~~~i~~ea~~~a~~i~~~~~~~a~~e~~~~~~r~~s~a~~~~rr~---~L~~r~~~l~~v~~~a~~kL~~~~~~~ 100 (188)
T PRK02292 24 EADEEAEEIIAEAEADAEEILEDREAEAEREIEQLREQELSSAKLEAKRE---RLNARKEVLEDVRNQVEDEIASLDGDK 100 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhcchhh
Confidence 33444444444555555555555555555444444444443333333322 11122223344455555555433
Q ss_pred HHHHHHHHHHHH
Q 032501 85 QDDLVSNMMEAA 96 (139)
Q Consensus 85 r~~~i~~l~~ea 96 (139)
...+|..++..+
T Consensus 101 y~~~l~~li~~~ 112 (188)
T PRK02292 101 REELTKSLLDAA 112 (188)
T ss_pred HHHHHHHHHHhc
Confidence 446777777766
No 34
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=72.19 E-value=48 Score=26.44 Aligned_cols=48 Identities=17% Similarity=0.151 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 032501 15 RFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQV 62 (139)
Q Consensus 15 ~FI~qEA~EKA~EI~~kA~Eef~iEK~~lV~~ek~kI~~~yekK~kq~ 62 (139)
.-.+.+|+.+|.+|-..|.++-+-+...++..-...+......-.+++
T Consensus 111 e~~L~~Ar~eA~~Ii~~Ar~ea~~~~e~~~~~a~~ea~~~l~~Ae~~I 158 (204)
T PRK09174 111 EQELAQARAKAHSIAQAAREAAKAKAEAERAAIEASLEKKLKEAEARI 158 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777777777777776655555555544444444333333333
No 35
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=72.00 E-value=42 Score=25.64 Aligned_cols=92 Identities=15% Similarity=0.237 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHH
Q 032501 15 RFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMME 94 (139)
Q Consensus 15 ~FI~qEA~EKA~EI~~kA~Eef~iEK~~lV~~ek~kI~~~yekK~kq~e~~kkI~~S~~~N~~RlkvL~ar~~~i~~l~~ 94 (139)
.-...+|+.+|.+|...|.++-+.++..++..-...+....+.....++.++.-... ..|.++.+-.+.
T Consensus 76 e~~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~ea~~~~~~a~~~I~~e~~~a~~-----------~l~~~i~~lA~~ 144 (175)
T PRK14472 76 RELLAKADAEADKIIREGKEYAEKLRAEITEKAHTEAKKMIASAKEEIEQEKRRALD-----------VLRNEVADLAVK 144 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHH
Confidence 345567778888888888888877777777776666666555555555555444322 234444444555
Q ss_pred HHHHHHHhhccChhHHHHHHHHHH
Q 032501 95 AASKEVLNVSRDHNSYKKLLKGLI 118 (139)
Q Consensus 95 ea~~kL~~~~~d~~~Y~~lL~~LI 118 (139)
-|.+-|.+.. |++....++...|
T Consensus 145 ~a~kil~~~l-~~~~~~~li~~~i 167 (175)
T PRK14472 145 GAEKIIRTSL-DADKQKKVVDSMI 167 (175)
T ss_pred HHHHHHHHHC-CHHHHHHHHHHHH
Confidence 5555554443 4444555555444
No 36
>PRK06328 type III secretion system protein; Validated
Probab=69.79 E-value=57 Score=26.31 Aligned_cols=106 Identities=9% Similarity=0.105 Sum_probs=55.4
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHH
Q 032501 17 IRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAA 96 (139)
Q Consensus 17 I~qEA~EKA~EI~~kA~Eef~iEK~~lV~~ek~kI~~~yekK~kq~e~~kkI~~S~~~N~~RlkvL~ar~~~i~~l~~ea 96 (139)
|...|++.|+.|...|.++++.-+..--++....=...+.. .+. .+.+...--.-..++++++=++.-|
T Consensus 34 il~~a~~~ae~i~~ea~~e~E~i~eeA~~eGy~eG~~~~~~---------~~~--~l~~~~~~~~~~~e~~lv~Lal~ia 102 (223)
T PRK06328 34 LLEKTKEDSEAYTQETHEECEKLREEAKNQGFKEGSKAWSK---------QLA--FLEEETQKLREQVKEALVPLAIASV 102 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777777766666554333322222222222211 111 1111111111234567777777777
Q ss_pred HHHHHh-hccChhHHHHHHHHHHhhhhhhhh-cCcceeeeccCC
Q 032501 97 SKEVLN-VSRDHNSYKKLLKGLIVQVSGIKL-VFPLFCVFSISH 138 (139)
Q Consensus 97 ~~kL~~-~~~d~~~Y~~lL~~LI~Qgl~ikL-~e~~v~v~~~~~ 138 (139)
++=+.. +..|| .++..++.++| -.+ ....|+|++|.+
T Consensus 103 ~kVi~~el~~d~----e~il~lV~~aL-~~l~~~~~v~I~VnP~ 141 (223)
T PRK06328 103 KKIIGKELELHP----ETIVSIIANSL-KELTQHKRIIIHVNPK 141 (223)
T ss_pred HHHHHHHHhhCH----HHHHHHHHHHH-HhcccCCceEEEECHH
Confidence 666654 33444 67778888888 444 346789988864
No 37
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=67.96 E-value=49 Score=24.78 Aligned_cols=93 Identities=15% Similarity=0.141 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHH
Q 032501 15 RFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMME 94 (139)
Q Consensus 15 ~FI~qEA~EKA~EI~~kA~Eef~iEK~~lV~~ek~kI~~~yekK~kq~e~~kkI~~S~~~N~~RlkvL~ar~~~i~~l~~ 94 (139)
.-...+|+.+|.+|...|..+..-++..++.+-+..+....+.-...++..+.-..+ ..|.++.+-.+.
T Consensus 63 ~~~l~~a~~ea~~ii~~a~~~a~~~~~~i~~~A~~ea~~~~~~a~~~i~~e~~~a~~-----------~l~~ei~~lA~~ 131 (159)
T PRK13461 63 ERELKNAKEEGKKIVEEYKSKAENVYEEIVKEAHEEADLIIERAKLEAQREKEKAEY-----------EIKNQAVDLAVL 131 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHH
Confidence 455677888888888888888888888888877777776666666665554443322 234444444555
Q ss_pred HHHHHHHhhccChhHHHHHHHHHHh
Q 032501 95 AASKEVLNVSRDHNSYKKLLKGLIV 119 (139)
Q Consensus 95 ea~~kL~~~~~d~~~Y~~lL~~LI~ 119 (139)
-|.+-|..-. |++....++...|-
T Consensus 132 ~a~kil~~~~-~~~~~~~li~~~i~ 155 (159)
T PRK13461 132 LSSKALEESI-DESEHRRLIKDFIS 155 (159)
T ss_pred HHHHHHHhHc-CHHHHHHHHHHHHh
Confidence 5555555544 55566676666653
No 38
>PRK06669 fliH flagellar assembly protein H; Validated
Probab=64.46 E-value=79 Score=25.95 Aligned_cols=59 Identities=14% Similarity=0.201 Sum_probs=38.1
Q ss_pred hHHHHHHHH-HHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHhhhhhhhhcC-cceeeeccC
Q 032501 75 NASRIKVLQ-AQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQVSGIKLVF-PLFCVFSIS 137 (139)
Q Consensus 75 N~~RlkvL~-ar~~~i~~l~~ea~~kL~~~~~d~~~Y~~lL~~LI~Qgl~ikL~e-~~v~v~~~~ 137 (139)
+..+-..+. ...++++-++.-|++=+.....+ .+.++..||.+++ -.|.+ +.|+|+++.
T Consensus 154 ~~~~~~~l~~~e~elv~Lal~iaekvi~~~~~~---~~~~i~~li~~al-~~l~~~~~i~I~V~p 214 (281)
T PRK06669 154 IKKREEILESSEEEIVELALDIAKKVIKEISEN---SKEIALALVKELL-KEVKDATDITIRVNP 214 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---CHHHHHHHHHHHH-HHcCcCCcEEEEECH
Confidence 444444553 55566666677776655444433 4577889999999 55544 778888864
No 39
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=63.72 E-value=59 Score=24.20 Aligned_cols=50 Identities=30% Similarity=0.319 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 032501 15 RFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEI 64 (139)
Q Consensus 15 ~FI~qEA~EKA~EI~~kA~Eef~iEK~~lV~~ek~kI~~~yekK~kq~e~ 64 (139)
.-+...|+.+|..+...|..+.+-|..+++.+-+..+.....+-..+++.
T Consensus 65 e~~l~~Ar~eA~~~~~~a~~~A~~ea~~~~~~A~~~~~~~~~~a~~~l~~ 114 (141)
T PRK08476 65 ETILKNAREEANKIRQKAIAKAKEEAEKKIEAKKAELESKYEAFAKQLAN 114 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666666666666666666665555444444433
No 40
>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b. This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.
Probab=61.90 E-value=60 Score=23.73 Aligned_cols=55 Identities=16% Similarity=0.150 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 032501 15 RFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIE 69 (139)
Q Consensus 15 ~FI~qEA~EKA~EI~~kA~Eef~iEK~~lV~~ek~kI~~~yekK~kq~e~~kkI~ 69 (139)
.-..++|+..|.+|...|..+.+-.+..++..-...+......-...++..+.-.
T Consensus 53 ~~~l~~A~~ea~~i~~~a~~~a~~~~~~~~~~a~~e~~~~~~~a~~~i~~e~~~a 107 (147)
T TIGR01144 53 QVILKEAKDEAQEIIENANKRGSEILEEAKAEAREEREKIKAQARAEIEAEKEQA 107 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778888888888888887777777776666655555555555444444333
No 41
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=61.26 E-value=65 Score=24.58 Aligned_cols=34 Identities=12% Similarity=0.142 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 032501 9 QIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQ 42 (139)
Q Consensus 9 qi~~Mv~FI~qEA~EKA~EI~~kA~Eef~iEK~~ 42 (139)
+..++..-|..+|++.++.+...|..+...|+.+
T Consensus 94 ea~~~~~~~~~~A~~ea~~~~~~a~~~ie~e~~~ 127 (173)
T PRK13460 94 DALKLKNKLLEETNNEVKAQKDQAVKEIELAKGK 127 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444333333
No 42
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=60.66 E-value=70 Score=24.05 Aligned_cols=95 Identities=15% Similarity=0.125 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHH
Q 032501 13 MVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNM 92 (139)
Q Consensus 13 Mv~FI~qEA~EKA~EI~~kA~Eef~iEK~~lV~~ek~kI~~~yekK~kq~e~~kkI~~S~~~N~~RlkvL~ar~~~i~~l 92 (139)
-..-...+|+.++.+|-..|.++-+-.+..++..-...+...-+.-...++.++.-... ..|.++.+-.
T Consensus 64 e~e~~l~~A~~ea~~ii~~A~~~a~~~~~~~~~~A~~ea~~~~~~a~~~i~~ek~~a~~-----------~l~~~i~~la 132 (164)
T PRK14471 64 DNERLLKEARAERDAILKEAREIKEKMIADAKEEAQVEGDKMIEQAKASIESEKNAAMA-----------EIKNQVANLS 132 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHH
Confidence 34456678999999999999988877777776666655555555555555544443322 3455566666
Q ss_pred HHHHHHHHHhhccChhHHHHHHHHHH
Q 032501 93 MEAASKEVLNVSRDHNSYKKLLKGLI 118 (139)
Q Consensus 93 ~~ea~~kL~~~~~d~~~Y~~lL~~LI 118 (139)
++-|.+-|.+-..+++....++...|
T Consensus 133 ~~~a~kil~~~l~~~~~~~~lid~~i 158 (164)
T PRK14471 133 VEIAEKVLRKELSNKEKQHKLVEKML 158 (164)
T ss_pred HHHHHHHHHHHcCcHhHHHHHHHHHH
Confidence 66666666664433333445555444
No 43
>PRK00106 hypothetical protein; Provisional
Probab=59.41 E-value=1.5e+02 Score=27.41 Aligned_cols=26 Identities=19% Similarity=0.321 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc
Q 032501 80 KVLQAQDDLVSNMMEAASKEVLNVSR 105 (139)
Q Consensus 80 kvL~ar~~~i~~l~~ea~~kL~~~~~ 105 (139)
+-|..+..-++.+..+...+|..++.
T Consensus 139 eeLee~~~~~~~~~~~~~~~Le~~a~ 164 (535)
T PRK00106 139 KHIDEREEQVEKLEEQKKAELERVAA 164 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34444444455555555555655543
No 44
>PRK08404 V-type ATP synthase subunit H; Validated
Probab=58.72 E-value=64 Score=23.02 Aligned_cols=68 Identities=21% Similarity=0.140 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHhhhHHHHHHHHHHH
Q 032501 15 RFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQD 86 (139)
Q Consensus 15 ~FI~qEA~EKA~EI~~kA~Eef~iEK~~lV~~ek~kI~~~yekK~kq~e~~kkI~~S~~~N~~RlkvL~ar~ 86 (139)
.-|..+|...|..+...+..+-.-+-.+++..-+..|..+-++-..++.. +.+.+.+.++-++-.+=+
T Consensus 27 ~~Ii~~Ak~~A~k~~~eii~eA~~eA~~ile~Ak~eie~Ek~~a~~elk~----eia~L~~~a~~k~~~av~ 94 (103)
T PRK08404 27 KKIIRKAKEEAKKIEEEIIKKAEEEAQKLIEKKKKEGEEEAKKILEEGEK----EIEELKVKAEENFETAVS 94 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555555666666666666555555444332 345556666655544433
No 45
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=58.08 E-value=81 Score=24.01 Aligned_cols=39 Identities=13% Similarity=0.237 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 032501 7 SKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVE 45 (139)
Q Consensus 7 ~~qi~~Mv~FI~qEA~EKA~EI~~kA~Eef~iEK~~lV~ 45 (139)
..+..++..-|..+|+..++.|...|..+...|+.+...
T Consensus 95 ~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~ 133 (174)
T PRK07352 95 KARAEAIRAEIEKQAIEDMARLKQTAAADLSAEQERVIA 133 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555555555554444444333
No 46
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=57.41 E-value=85 Score=24.02 Aligned_cols=54 Identities=13% Similarity=0.166 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 032501 16 FIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIE 69 (139)
Q Consensus 16 FI~qEA~EKA~EI~~kA~Eef~iEK~~lV~~ek~kI~~~yekK~kq~e~~kkI~ 69 (139)
-...+|+..|.+|...|..+-.-++..++..-+.......+.-...++.++.-.
T Consensus 77 ~~l~~a~~ea~~ii~~a~~~a~~~~~~~~~~A~~ea~~~~~~A~~~I~~ek~~a 130 (173)
T PRK13453 77 QKLKETQEEVQKILEDAKVQARQQQEQIIHEANVRANGMIETAQSEINSQKERA 130 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667777777777777777777777777666666665555555555554444
No 47
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=56.75 E-value=87 Score=23.94 Aligned_cols=47 Identities=13% Similarity=0.176 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 032501 6 VSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIR 52 (139)
Q Consensus 6 v~~qi~~Mv~FI~qEA~EKA~EI~~kA~Eef~iEK~~lV~~ek~kI~ 52 (139)
...+.+++..=|..+|+..++.+..+|..+-+.|+.+.+..-+..|-
T Consensus 97 A~~eAe~~~~~ii~~A~~ea~~~~~~a~~~ie~Ek~~a~~elk~eii 143 (167)
T PRK08475 97 AKKEAYILTQKIEKQTKDDIENLIKSFEELMEFEVRKMEREVVEEVL 143 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555666666666666666666666666666665555443
No 48
>TIGR02926 AhaH ATP synthase archaeal, H subunit. he A1/A0 ATP synthase is homologous to the V-type (V1/V0, vacuolar) ATPase, but functions in the ATP synthetic direction as does the F1/F0 ATPase of bacteria. The hydrophilic A1 "stalk" complex (AhaABCDEFG) is the site of ATP generation and is coupled to the membrane-embedded proton translocating A0 complex. It is unclear precisely where AhaH fits into these complexes.
Probab=56.63 E-value=60 Score=22.03 Aligned_cols=32 Identities=25% Similarity=0.152 Sum_probs=16.7
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 032501 17 IRQEAEEKANEISVSAEEEFNIEKLQLVEAEK 48 (139)
Q Consensus 17 I~qEA~EKA~EI~~kA~Eef~iEK~~lV~~ek 48 (139)
|..+|+.+|.+|-..|..+-+.....++..-.
T Consensus 14 ~l~~A~~ea~~Ii~~A~~~A~~~~~~a~~~A~ 45 (85)
T TIGR02926 14 LIEEAEEERKQRIAEAREEARELLEEAEEEAS 45 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666665555444444444333
No 49
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=55.07 E-value=88 Score=23.48 Aligned_cols=30 Identities=3% Similarity=0.162 Sum_probs=18.3
Q ss_pred HHhHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 032501 69 EYSMQLNASRIKVLQAQDDLVSNMMEAASK 98 (139)
Q Consensus 69 ~~S~~~N~~RlkvL~ar~~~i~~l~~ea~~ 98 (139)
.....+.+++-.+-..+...+..+-.++-.
T Consensus 101 ea~~~~~~a~~~i~~ek~~a~~~l~~~i~~ 130 (164)
T PRK14471 101 EGDKMIEQAKASIESEKNAAMAEIKNQVAN 130 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666666777776666666665544
No 50
>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.
Probab=52.74 E-value=79 Score=22.26 Aligned_cols=42 Identities=31% Similarity=0.287 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032501 16 FIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYER 57 (139)
Q Consensus 16 FI~qEA~EKA~EI~~kA~Eef~iEK~~lV~~ek~kI~~~yek 57 (139)
-...+|+..+.+|...|.++-+-++..++..-...+......
T Consensus 58 ~~l~~a~~ea~~i~~~a~~~a~~~~~~~~~ea~~~~~~~~~~ 99 (132)
T PF00430_consen 58 EKLAEAREEAQEIIEEAKEEAEKEKEEILAEAEKEAERIIEQ 99 (132)
T ss_dssp HHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666666665555555555444444443333
No 51
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=52.43 E-value=96 Score=23.15 Aligned_cols=37 Identities=22% Similarity=0.206 Sum_probs=15.8
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032501 17 IRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQ 53 (139)
Q Consensus 17 I~qEA~EKA~EI~~kA~Eef~iEK~~lV~~ek~kI~~ 53 (139)
|..+|+..|+.+......+.+-|=.+++...+..|..
T Consensus 76 ii~~a~~~a~~~~~~i~~~A~~ea~~~~~~a~~~i~~ 112 (159)
T PRK13461 76 IVEEYKSKAENVYEEIVKEAHEEADLIIERAKLEAQR 112 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444443
No 52
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=52.22 E-value=1.1e+02 Score=23.61 Aligned_cols=38 Identities=13% Similarity=0.229 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 032501 9 QIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEA 46 (139)
Q Consensus 9 qi~~Mv~FI~qEA~EKA~EI~~kA~Eef~iEK~~lV~~ 46 (139)
...++..-|..+|+..++.+...|..+.+.|+.+...+
T Consensus 102 ~ae~~~~~il~~A~~ea~~~~~~a~~~ie~Ek~~a~~~ 139 (184)
T CHL00019 102 EIEREKENLINQAKEDLERLENYKNETIRFEQQRAINQ 139 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444455555555544444444444333
No 53
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=51.43 E-value=1.2e+02 Score=24.04 Aligned_cols=48 Identities=17% Similarity=0.174 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032501 12 QMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKE 59 (139)
Q Consensus 12 ~Mv~FI~qEA~EKA~EI~~kA~Eef~iEK~~lV~~ek~kI~~~yekK~ 59 (139)
.-..-|..+|++.|+.+...+.++.+.+-.+++.+.+..|..+-.+-.
T Consensus 114 ~eA~~Ii~~A~~eAe~~~e~i~~~A~~eae~ii~~A~~~Ie~Ek~~a~ 161 (205)
T PRK06231 114 AQAKEIIDQANYEALQLKSELEKEANRQANLIIFQARQEIEKERRELK 161 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555556665555555555566666677776666666554443
No 54
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=49.34 E-value=1.1e+02 Score=23.11 Aligned_cols=24 Identities=21% Similarity=0.259 Sum_probs=12.0
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHH
Q 032501 19 QEAEEKANEISVSAEEEFNIEKLQ 42 (139)
Q Consensus 19 qEA~EKA~EI~~kA~Eef~iEK~~ 42 (139)
..|+.+|.+|-..|..+-.-+...
T Consensus 72 ~~A~~ea~~Ii~~A~~~a~~~~~~ 95 (167)
T PRK14475 72 EEAERQAAAMLAAAKADARRMEAE 95 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555554443333
No 55
>PRK12704 phosphodiesterase; Provisional
Probab=48.69 E-value=2.1e+02 Score=26.05 Aligned_cols=24 Identities=17% Similarity=0.372 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Q 032501 81 VLQAQDDLVSNMMEAASKEVLNVS 104 (139)
Q Consensus 81 vL~ar~~~i~~l~~ea~~kL~~~~ 104 (139)
-|..+..-++.+..+...+|..++
T Consensus 125 eLe~~~~~~~~~~~~~~~~l~~~a 148 (520)
T PRK12704 125 ELEKKEEELEELIEEQLQELERIS 148 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444444455555555544
No 56
>PF01991 vATP-synt_E: ATP synthase (E/31 kDa) subunit; InterPro: IPR002842 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit E from the V1 and A1 complexes of V- and A-ATPases, respectively. Subunit E appears to form a tight interaction with subunit G in the F0 complex, which together may act as stators to prevent certain subunits from rotating with the central rotary element, much in the same way as the F0 complex subunit B does in F-ATPases []. In addition to its key role in stator structure, subunit E appears to have a role in mediating interactions with putative regulatory subunits []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 3LG8_A 2KK7_A 4DT0_A 2DM9_A 2DMA_A 3V6I_A 3K5B_A 3J0J_L 2KZ9_A.
Probab=48.35 E-value=1.2e+02 Score=22.88 Aligned_cols=94 Identities=24% Similarity=0.301 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHh--------hhHHHH
Q 032501 8 KQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQ--------LNASRI 79 (139)
Q Consensus 8 ~qi~~Mv~FI~qEA~EKA~EI~~kA~Eef~iEK~~lV~~ek~kI~~~yekK~kq~e~~kkI~~S~~--------~N~~Rl 79 (139)
.+-+.=.+=|..+|++.++.|...|.++..-.....+......+.....+....+.+..+-..... .+.++-
T Consensus 4 ~eA~~ka~~I~~eA~~e~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~r~~~l~~k~~~i~~v~~~~~~ 83 (198)
T PF01991_consen 4 EEAQEKAEEIIAEAQEEAEKILEEAEEEAEKEIEEIIEKAEKEAEQEKEREISKAELEARRELLEAKQEIIDEVFEEVKE 83 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555667888888888888888777777777777777777777666666655555433222 333333
Q ss_pred HHHH------HHHHHHHHHHHHHHHHHH
Q 032501 80 KVLQ------AQDDLVSNMMEAASKEVL 101 (139)
Q Consensus 80 kvL~------ar~~~i~~l~~ea~~kL~ 101 (139)
++-. .-..+|..++.++-..+.
T Consensus 84 ~L~~~~~~~~~Y~~~L~~li~~~~~~~~ 111 (198)
T PF01991_consen 84 KLKSFSKDPDDYKKFLKKLIEEAAEKLG 111 (198)
T ss_dssp HHHCTTCCC-THHHHHHHHHHHHHHCCT
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHHhc
Confidence 3222 234677778877766554
No 57
>PF10557 Cullin_Nedd8: Cullin protein neddylation domain; InterPro: IPR019559 This is the neddylation site of cullin proteins, which are a family of structurally related proteins containing an evolutionarily conserved cullin domain. With the exception of APC2, each member of the cullin family is modified by Nedd8 and several cullins function in Ubiquitin-dependent proteolysis, a process in which the 26S proteasome recognises and subsequently degrades a target protein tagged with K48-linked poly-ubiquitin chains. Cullins are molecular scaffolds responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis. Nedd8/Rub1 is a small ubiquitin-like protein, which was originally found to be conjugated to Cdc53, a cullin component of the SCF (Skp1-Cdc53/CUL1-F-box protein) E3 Ub ligase complex in Saccharomyces cerevisiae (Baker's yeast), and Nedd8 modification has now emerged as a regulatory pathway of fundamental importance for cell cycle control and for embryogenesis in metazoans. The only identified Nedd8 substrates are cullins. Neddylation results in covalent conjugation of a Nedd8 moiety onto a conserved cullin lysine residue []. ; GO: 0031625 ubiquitin protein ligase binding, 0006511 ubiquitin-dependent protein catabolic process, 0031461 cullin-RING ubiquitin ligase complex; PDB: 3RTR_G 3TDU_D 1LDJ_A 3TDZ_D 1LDK_B 1U6G_A 3O6B_J 3O2P_E 4A0K_A 2HYE_C ....
Probab=47.10 E-value=24 Score=23.03 Aligned_cols=60 Identities=15% Similarity=0.250 Sum_probs=41.5
Q ss_pred HHhHhhhHHHHHHHHHHHHH-HHHHHHHHHHHHH-hhccChhHHHHHHHHHHhhhhhhhhcCc
Q 032501 69 EYSMQLNASRIKVLQAQDDL-VSNMMEAASKEVL-NVSRDHNSYKKLLKGLIVQVSGIKLVFP 129 (139)
Q Consensus 69 ~~S~~~N~~RlkvL~ar~~~-i~~l~~ea~~kL~-~~~~d~~~Y~~lL~~LI~Qgl~ikL~e~ 129 (139)
.++..+.++=.++|+.+-.+ .++|+.++.+.|. ....+....+.-+..||-.|. |+-.+.
T Consensus 4 ~R~~~I~AaIVrimK~~k~~~~~~L~~~v~~~l~~~f~~~~~~ik~~Ie~LIekey-i~Rd~~ 65 (68)
T PF10557_consen 4 DRKYQIDAAIVRIMKQEKKLSHDELINEVIEELKKRFPPSVSDIKKRIESLIEKEY-IERDED 65 (68)
T ss_dssp HHHHHHHHHHHHHHHHSSEEEHHHHHHHHHHHTTTTS---HHHHHHHHHHHHHTTS-EEEESS
T ss_pred hhhhhhhhheehhhhhcCceeHHHHHHHHHHHhcCCcCCCHHHHHHHHHHHHHhhh-hhcCCC
Confidence 35566777777888876443 5667777777776 456667789999999999998 765543
No 58
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=44.62 E-value=1.4e+02 Score=22.79 Aligned_cols=21 Identities=19% Similarity=0.278 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 032501 40 KLQLVEAEKKKIRQEYERKEK 60 (139)
Q Consensus 40 K~~lV~~ek~kI~~~yekK~k 60 (139)
-.+++.+-...|..+-.+-..
T Consensus 112 a~~~~~~A~~~I~~ek~~a~~ 132 (173)
T PRK13453 112 ANGMIETAQSEINSQKERAIA 132 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555554444443
No 59
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=41.75 E-value=1.6e+02 Score=22.66 Aligned_cols=19 Identities=11% Similarity=0.055 Sum_probs=9.7
Q ss_pred HHHHHHHHHhhHHHHHHHH
Q 032501 18 RQEAEEKANEISVSAEEEF 36 (139)
Q Consensus 18 ~qEA~EKA~EI~~kA~Eef 36 (139)
+.+|+.+|.+|-..|.+.-
T Consensus 65 L~~Ar~EA~~Ii~~A~~~a 83 (154)
T PRK06568 65 IKKLETLRSQMIEESNEVT 83 (154)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555443
No 60
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=39.98 E-value=1.7e+02 Score=22.56 Aligned_cols=35 Identities=14% Similarity=0.101 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 032501 15 RFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKK 49 (139)
Q Consensus 15 ~FI~qEA~EKA~EI~~kA~Eef~iEK~~lV~~ek~ 49 (139)
.-+..+|+..+.+|...|.++-+-++..++..-..
T Consensus 89 e~~L~~Ar~EA~~ii~~A~~ea~~~~~~~~~~A~~ 123 (181)
T PRK13454 89 NKALADARAEAQRIVAETRAEIQAELDVAIAKADA 123 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666655555544444433
No 61
>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b. This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.
Probab=39.87 E-value=1.5e+02 Score=21.64 Aligned_cols=45 Identities=22% Similarity=0.314 Sum_probs=20.9
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 032501 17 IRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQ 61 (139)
Q Consensus 17 I~qEA~EKA~EI~~kA~Eef~iEK~~lV~~ek~kI~~~yekK~kq 61 (139)
|..+|+..|+.+...+..+.+-+-.+++..-...|..+-.+-..+
T Consensus 66 i~~~a~~~a~~~~~~~~~~a~~e~~~~~~~a~~~i~~e~~~a~~~ 110 (147)
T TIGR01144 66 IIENANKRGSEILEEAKAEAREEREKIKAQARAEIEAEKEQAREE 110 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444555555555554444444333
No 62
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=38.71 E-value=1.7e+02 Score=21.95 Aligned_cols=47 Identities=19% Similarity=0.169 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 032501 15 RFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQ 61 (139)
Q Consensus 15 ~FI~qEA~EKA~EI~~kA~Eef~iEK~~lV~~ek~kI~~~yekK~kq 61 (139)
.-|..+|...|+.+.....++.+-|-.+++..-...|..+-.+-..+
T Consensus 77 ~~ii~~A~~~a~~~~~~~l~~A~~ea~~~~~~a~~~I~~ek~~a~~~ 123 (164)
T PRK14473 77 AKIVAQAQERARAQEAEIIAQARREAEKIKEEARAQAEQERQRMLSE 123 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455444444444444444444556666666666555444443
No 63
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=37.14 E-value=4.4e+02 Score=26.31 Aligned_cols=77 Identities=18% Similarity=0.213 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHH
Q 032501 37 NIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKG 116 (139)
Q Consensus 37 ~iEK~~lV~~ek~kI~~~yekK~kq~e~~kkI~~S~~~N~~RlkvL~ar~~~i~~l~~ea~~kL~~~~~d~~~Y~~lL~~ 116 (139)
+.||.+-++=|+.++.+....+.++- ..|- .-.+|++-|+.+.+.|+.=+.+.-.+|.++-.+-..-+..+..
T Consensus 404 ElEkqRqlewErar~qem~~Qk~req---e~iv----~~nak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~ 476 (1118)
T KOG1029|consen 404 ELEKQRQLEWERARRQEMLNQKNREQ---EWIV----YLNAKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEE 476 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHH---HHHH----HHHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHH
Confidence 35777777777777776665544431 2222 2345566666666677766666667777766555555565555
Q ss_pred HHhh
Q 032501 117 LIVQ 120 (139)
Q Consensus 117 LI~Q 120 (139)
+-.|
T Consensus 477 ~~~q 480 (1118)
T KOG1029|consen 477 VTKQ 480 (1118)
T ss_pred hhhH
Confidence 5444
No 64
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=35.54 E-value=1.9e+02 Score=21.57 Aligned_cols=46 Identities=24% Similarity=0.277 Sum_probs=22.1
Q ss_pred hhHHHHHHHHHHHHHHHHHH--------HHHHHHHHhhccChhHHHHHHHHHHhh
Q 032501 74 LNASRIKVLQAQDDLVSNMM--------EAASKEVLNVSRDHNSYKKLLKGLIVQ 120 (139)
Q Consensus 74 ~N~~RlkvL~ar~~~i~~l~--------~ea~~kL~~~~~d~~~Y~~lL~~LI~Q 120 (139)
.+.+|..+-..|...+.++. .-|.+-|..-. |+.....++...|-.
T Consensus 100 ~~~a~~~I~~ek~~a~~el~~~~~~lA~~~A~kil~~~l-~~~~~~~li~~~i~~ 153 (159)
T PRK09173 100 NKLAEQKIAQAETDAINAVRSSAVDLAIAAAEKLLAEKV-DAKAASELFKDALAQ 153 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CHHHHHHHHHHHHHH
Confidence 34444444444444444433 33444343332 555666666666643
No 65
>PRK01558 V-type ATP synthase subunit E; Provisional
Probab=34.84 E-value=2.2e+02 Score=22.29 Aligned_cols=30 Identities=37% Similarity=0.419 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 032501 8 KQIQQMVRFIRQEAEEKANEISVSAEEEFN 37 (139)
Q Consensus 8 ~qi~~Mv~FI~qEA~EKA~EI~~kA~Eef~ 37 (139)
.+-++=.+-|..+|+.+|++|-..|.++.+
T Consensus 18 eeA~~eA~~Ii~eA~~eAe~Ii~eA~~eAe 47 (198)
T PRK01558 18 EEAERLANEIILEAKEEAEEIIAKAEEEAK 47 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555667788888888888888877743
No 66
>PF10669 Phage_Gp23: Protein gp23 (Bacteriophage A118); InterPro: IPR018926 This entry is represented by the major tail subunit protein, Gp23 of Listeria phage A118 and prophage found in Bacilli. The function is currently unknown.
Probab=34.53 E-value=1.9e+02 Score=21.36 Aligned_cols=42 Identities=7% Similarity=0.211 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHhHhhhHHHHHHHHHHHHHHH
Q 032501 47 EKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVS 90 (139)
Q Consensus 47 ek~kI~~~yekK~kq~e~~kkI~~S~~~N~~RlkvL~ar~~~i~ 90 (139)
|+.+..++-+++.+.-+-.+.-..|+.-.+.|| |..+++++-
T Consensus 51 ER~K~E~~~q~r~rES~~Er~K~~~s~~~~q~L--m~rQN~mm~ 92 (121)
T PF10669_consen 51 ERSKKEEKRQKRNRESKRERQKFIWSMNKQQSL--MNRQNNMMK 92 (121)
T ss_pred HHHHHHHHHHHHhhhhHHHHHhHHhhhhHHHHH--HHHHhHHHH
Confidence 677788888888888888888888888888888 888877764
No 67
>KOG2880 consensus SMAD6 interacting protein AMSH, contains JAB/MPN/Mov34 domain [Signal transduction mechanisms]
Probab=32.68 E-value=3.5e+02 Score=24.31 Aligned_cols=58 Identities=17% Similarity=0.287 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 032501 13 MVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEY 70 (139)
Q Consensus 13 Mv~FI~qEA~EKA~EI~~kA~Eef~iEK~~lV~~ek~kI~~~yekK~kq~e~~kkI~~ 70 (139)
...=++-+|-.+++|+..+--..|+.|++.+-+..+....+-+.+-+.+-+...-.++
T Consensus 85 ~~~klk~~~~p~~deL~~~ll~rY~~eyn~y~~~K~k~~~E~~k~le~~~~~E~e~kr 142 (424)
T KOG2880|consen 85 IRKKLKEEAFPRIDELKAKLLKRYNVEYNEYDHSKKKNLAERFKKLEVQREEETERKR 142 (424)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhhHHHHHHHHHhhhHHHHHHHhhcchhhHHHHHH
Confidence 3444568999999999999999999999988887766644444444444433333333
No 68
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=31.89 E-value=2.3e+02 Score=21.46 Aligned_cols=76 Identities=14% Similarity=0.152 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHH--------HHHHHhhccChhH
Q 032501 38 IEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAA--------SKEVLNVSRDHNS 109 (139)
Q Consensus 38 iEK~~lV~~ek~kI~~~yekK~kq~e~~kkI~~S~~~N~~RlkvL~ar~~~i~~l~~ea--------~~kL~~~~~d~~~ 109 (139)
.|-..++.+-+......++....++.- .....+..+|..+-..|...+.++-.++ .+-|..-. |++.
T Consensus 76 ~ea~~Ii~~A~~~a~~~~~~~~~~A~~----ea~~~~~~A~~~I~~e~~~a~~el~~e~~~lAv~~A~kil~~~l-~~~~ 150 (167)
T PRK14475 76 RQAAAMLAAAKADARRMEAEAKEKLEE----QIKRRAEMAERKIAQAEAQAAADVKAAAVDLAAQAAETVLAARL-AGAK 150 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHc-CHHH
Confidence 334444555444444444443333322 2334455666666666665555554443 33332222 4445
Q ss_pred HHHHHHHHH
Q 032501 110 YKKLLKGLI 118 (139)
Q Consensus 110 Y~~lL~~LI 118 (139)
...++...|
T Consensus 151 ~~~lid~~i 159 (167)
T PRK14475 151 SDPLVDAAI 159 (167)
T ss_pred HHHHHHHHH
Confidence 566666665
No 69
>PF03179 V-ATPase_G: Vacuolar (H+)-ATPase G subunit; InterPro: IPR005124 This family represents the eukaryotic vacuolar (H+)-ATPase (V-ATPase) G subunit. V-ATPases generate an acidic environment in several intracellular compartments. Correspondingly, they are found as membrane-attached proteins in several organelles. They are also found in the plasma membranes of some specialised cells. V-ATPases consist of peripheral (V1) and membrane integral (V0) heteromultimeric complexes. The G subunit is part of the V1 subunit, but is also thought to be strongly attached to the V0 complex. It may be involved in the coupling of ATP degradation to H+ translocation.; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015992 proton transport, 0016471 vacuolar proton-transporting V-type ATPase complex; PDB: 2KWY_A 2K88_A.
Probab=30.65 E-value=1.9e+02 Score=20.12 Aligned_cols=43 Identities=2% Similarity=0.136 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHhhhh
Q 032501 80 KVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQVS 122 (139)
Q Consensus 80 kvL~ar~~~i~~l~~ea~~kL~~~~~d~~~Y~~lL~~LI~Qgl 122 (139)
+.+...+.....|..++..++..+..+......-..++|+.-+
T Consensus 59 ~~~~~~~~~~~~l~~et~~~i~~i~~~~~~~~~~vv~~ll~~V 101 (105)
T PF03179_consen 59 EAEGEAEQEAEELEKETEEKIEEIKKSASKNKDKVVDMLLSRV 101 (105)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HhhccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4566677788888888888888876665555555555555444
No 70
>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]
Probab=30.28 E-value=2.4e+02 Score=21.35 Aligned_cols=67 Identities=27% Similarity=0.253 Sum_probs=40.6
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHhhhHHHHHHHHHHHH
Q 032501 17 IRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDD 87 (139)
Q Consensus 17 I~qEA~EKA~EI~~kA~Eef~iEK~~lV~~ek~kI~~~yekK~kq~e~~kkI~~S~~~N~~RlkvL~ar~~ 87 (139)
-..+|+.+|.+|-..|..+-.. +.+.-+.....+-++...+...+-..+........|..+-..-..
T Consensus 66 ~l~~Ar~~a~~Ii~~A~~~a~~----~~~e~~~~a~~e~~r~~~~a~~~I~~e~~~a~~~l~~~~~~la~~ 132 (161)
T COG0711 66 ELEEAREQASEIIEQAKKEAEQ----IAEEIKAEAEEELERIKEAAEAEIEAEKERALEELRAEVAELAVA 132 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457778888888888777655 344444455566666666666665555555555555554443333
No 71
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=29.89 E-value=4.3e+02 Score=24.07 Aligned_cols=104 Identities=13% Similarity=0.192 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhhH-HHHHHHHHhHhhhHHHHHHHHHHHHH
Q 032501 17 IRQEAEEKANEISVSAEEEFNIEKLQLVEAE-------KKKIRQEYERKEKQV-EIRKKIEYSMQLNASRIKVLQAQDDL 88 (139)
Q Consensus 17 I~qEA~EKA~EI~~kA~Eef~iEK~~lV~~e-------k~kI~~~yekK~kq~-e~~kkI~~S~~~N~~RlkvL~ar~~~ 88 (139)
+..+|+.+|+.|...|..+-.-++.....+- +..+..+|..+...+ ....++..-...-..|..-|..|+.-
T Consensus 26 ~l~~Ae~eAe~i~keA~~eAke~~ke~~~EaeeE~~~~R~Ele~el~~~e~rL~qrE~rL~qRee~Lekr~e~Lekre~~ 105 (514)
T TIGR03319 26 KLGSAEELAKRIIEEAKKEAETLKKEALLEAKEEVHKLRAELERELKERRNELQRLERRLLQREETLDRKMESLDKKEEN 105 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHhhccChhHHHHHHHHHHhh
Q 032501 89 VSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ 120 (139)
Q Consensus 89 i~~l~~ea~~kL~~~~~d~~~Y~~lL~~LI~Q 120 (139)
|..--.+...+-..+-.-...+..+.......
T Consensus 106 Le~ke~~L~~re~eLee~~~e~~~~~~~~~~~ 137 (514)
T TIGR03319 106 LEKKEKELSNKEKNLDEKEEELEELIAEQREE 137 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 72
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=29.47 E-value=2.4e+02 Score=21.05 Aligned_cols=44 Identities=16% Similarity=0.166 Sum_probs=20.9
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 032501 18 RQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQ 61 (139)
Q Consensus 18 ~qEA~EKA~EI~~kA~Eef~iEK~~lV~~ek~kI~~~yekK~kq 61 (139)
..+|++.|+.+...+..+..-|-.+++.+-+..|..+-.+-..+
T Consensus 94 i~~A~~~a~~~~~~~~~~A~~ea~~~~~~a~~~i~~ek~~a~~~ 137 (156)
T CHL00118 94 ITQSQKEAKEIVENELKQAQKYIDSLLNEATKQLEAQKEKALKS 137 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444555555555555554444433
No 73
>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.
Probab=28.41 E-value=2.1e+02 Score=20.01 Aligned_cols=46 Identities=28% Similarity=0.304 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032501 15 RFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60 (139)
Q Consensus 15 ~FI~qEA~EKA~EI~~kA~Eef~iEK~~lV~~ek~kI~~~yekK~k 60 (139)
.-|..+|.+.|+.+......+..-+-.+++.+-...|..+-+.-.+
T Consensus 68 ~~i~~~a~~~a~~~~~~~~~ea~~~~~~~~~~a~~~i~~e~~~a~~ 113 (132)
T PF00430_consen 68 QEIIEEAKEEAEKEKEEILAEAEKEAERIIEQAEAEIEQEKEKAKK 113 (132)
T ss_dssp CHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666666666666666666666666655444333
No 74
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=28.29 E-value=2.3e+02 Score=20.40 Aligned_cols=24 Identities=21% Similarity=0.199 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 032501 33 EEEFNIEKLQLVEAEKKKIRQEYE 56 (139)
Q Consensus 33 ~Eef~iEK~~lV~~ek~kI~~~ye 56 (139)
..+.+-|-.+++..-+..|..+-.
T Consensus 92 ~~~a~~ea~~~~~~a~~~i~~e~~ 115 (140)
T PRK07353 92 LAEAQAEAQASKEKARREIEQQKQ 115 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344445544444544433
No 75
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=26.90 E-value=3.1e+02 Score=21.47 Aligned_cols=107 Identities=20% Similarity=0.291 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhhHHH-HHHHHHhHhhhHHHHHHHHHHHH
Q 032501 11 QQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQE--YERKEKQVEI-RKKIEYSMQLNASRIKVLQAQDD 87 (139)
Q Consensus 11 ~~Mv~FI~qEA~EKA~EI~~kA~Eef~iEK~~lV~~ek~kI~~~--yekK~kq~e~-~kkI~~S~~~N~~RlkvL~ar~~ 87 (139)
.....=+.-+|++.+..++..++.+|+-.+..+...+..-..-+ .+++...++- .+.+..-..-...+...|..+..
T Consensus 48 e~~~ke~~~eakee~~~~r~~~E~E~~~~~~el~~~E~rl~~rE~~L~~~~~~L~~~e~~l~~~~~~l~~~~~~l~~~~~ 127 (201)
T PF12072_consen 48 EAIKKEAELEAKEEAQKLRQELERELKERRKELQRLEKRLQQREEQLDRRLEQLEKREEELEKKEEELEQRKEELEEREE 127 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444445555555555555555555555554443211110 1111111111 11122222222334555666777
Q ss_pred HHHHHHHHHHHHHHhhccChh--HHHHHHHHH
Q 032501 88 LVSNMMEAASKEVLNVSRDHN--SYKKLLKGL 117 (139)
Q Consensus 88 ~i~~l~~ea~~kL~~~~~d~~--~Y~~lL~~L 117 (139)
-+..+..+...+|..++.=+. --..||..|
T Consensus 128 e~~~~~~~~~~~Le~iAglT~eEAk~~Ll~~l 159 (201)
T PF12072_consen 128 ELEELIEEQQQELEEIAGLTAEEAKEILLEKL 159 (201)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 777777777777777654331 344455444
No 76
>PF01765 RRF: Ribosome recycling factor; InterPro: IPR023584 The ribosome recycling factor or ribosome release factor (RRF) dissociates ribosomes from mRNA after termination of translation, and is essential for bacterial growth []. Thus ribosomes are 'recycled' and ready for another round of protein synthesis. This entry represents a domain found in ribosome recycling factors.; PDB: 3R8N_Y 1Y69_8 1ISE_A 1EK8_A 1DD5_A 1WIH_A 2Z4L_6 2QBE_6 2V46_Y 1EH1_A ....
Probab=26.13 E-value=2.9e+02 Score=20.91 Aligned_cols=31 Identities=19% Similarity=0.238 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 032501 6 VSKQIQQMVRFIRQEAEEKANEISVSAEEEF 36 (139)
Q Consensus 6 v~~qi~~Mv~FI~qEA~EKA~EI~~kA~Eef 36 (139)
.-+++-+.+.-+-.+|+...+.|+..+...+
T Consensus 91 ~R~~l~k~~k~~~E~~k~~iR~iR~~~~~~l 121 (165)
T PF01765_consen 91 RRKELVKQAKKIAEEAKVSIRNIRRDAMKKL 121 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555666666666666555554
No 77
>PF07052 Hep_59: Hepatocellular carcinoma-associated antigen 59; InterPro: IPR010756 This family represents a conserved region approximately 100 residues long within mammalian hepatocellular carcinoma-associated antigen 59 and similar proteins. Family members are found in a variety of eukaryotes, mainly as hypothetical proteins.
Probab=24.63 E-value=52 Score=23.39 Aligned_cols=14 Identities=21% Similarity=0.686 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHH
Q 032501 11 QQMVRFIRQEAEEK 24 (139)
Q Consensus 11 ~~Mv~FI~qEA~EK 24 (139)
+||++||+.|=..+
T Consensus 14 khM~~YIE~eL~kr 27 (104)
T PF07052_consen 14 KHMMKYIEEELAKR 27 (104)
T ss_pred HHHHHHHHHHHHHh
Confidence 68999999875553
No 78
>PRK12705 hypothetical protein; Provisional
Probab=21.63 E-value=6.4e+02 Score=23.19 Aligned_cols=34 Identities=18% Similarity=0.033 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 032501 13 MVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEA 46 (139)
Q Consensus 13 Mv~FI~qEA~EKA~EI~~kA~Eef~iEK~~lV~~ 46 (139)
...=..-+|++++...+..++++++-.+..+-+.
T Consensus 49 ~~~~~~~~~~~~~~~~~~~~e~e~~~~~~~~~~~ 82 (508)
T PRK12705 49 KLEAALLEAKELLLRERNQQRQEARREREELQRE 82 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555555555555566665555544333
No 79
>PF09106 SelB-wing_2: Elongation factor SelB, winged helix ; InterPro: IPR015190 This entry represents a domain with a winged helix-type fold, which consists of a closed 3-helical bundle with a right-handed twist, and a small beta-sheet wing []. Different winged helix domains share a common structure, but can differ in sequence. This entry is designated "type 2". The winged helix motif is involved in both DNA and RNA binding. In the elongation factor SelB, the winged helix domains recognise RNA, allowing the complex to wrap around the small ribosomal subunit. In bacteria, the incorporation of the amino acid selenocysteine into proteins requires elongation factor SelB, which binds both transfer RNA (tRNA) and mRNA. SelB binds to an mRNA hairpin formed by the selenocysteine insertion sequence (SECIS) with extremely high specificity []. ; GO: 0003723 RNA binding, 0003746 translation elongation factor activity, 0005525 GTP binding, 0001514 selenocysteine incorporation, 0005737 cytoplasm; PDB: 2V9V_A 1LVA_A 2PLY_A 2UWM_A.
Probab=21.17 E-value=81 Score=19.82 Aligned_cols=26 Identities=15% Similarity=0.190 Sum_probs=20.6
Q ss_pred ChhHHHHHHHHHHhhhhhhhhcCccee
Q 032501 106 DHNSYKKLLKGLIVQVSGIKLVFPLFC 132 (139)
Q Consensus 106 d~~~Y~~lL~~LI~Qgl~ikL~e~~v~ 132 (139)
++..|..+|..|+.+|. |+...+-|.
T Consensus 33 ~~k~~~~ll~~l~~~g~-l~~~g~~v~ 58 (59)
T PF09106_consen 33 PPKLFNALLEALVAEGR-LKVEGDWVR 58 (59)
T ss_dssp -HCCHHHHHHHHHHTTS-EEEESSEEE
T ss_pred CHHHHHHHHHHHHHCCC-eeeECCEee
Confidence 45579999999999999 877766554
No 80
>PF06969 HemN_C: HemN C-terminal domain; InterPro: IPR010723 Proteins containing this domain are all oxygen-independent coproporphyrinogen-III oxidases (HemN). This enzyme catalyses the oxygen-independent conversion of coproporphyrinogen-III to protoporphyrinogen-IX [], one of the last steps in haem biosynthesis. The function of this domain is unclear, but comparison to other proteins containing a radical SAM domain suggest it may be a substrate binding domain.; GO: 0004109 coproporphyrinogen oxidase activity, 0006779 porphyrin-containing compound biosynthetic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1OLT_A.
Probab=21.16 E-value=81 Score=19.72 Aligned_cols=26 Identities=12% Similarity=0.034 Sum_probs=19.9
Q ss_pred hHHHHHHHHHHhhhhhhhhcCcceeee
Q 032501 108 NSYKKLLKGLIVQVSGIKLVFPLFCVF 134 (139)
Q Consensus 108 ~~Y~~lL~~LI~Qgl~ikL~e~~v~v~ 134 (139)
+.|...|..|+-+|+ +.+....+++.
T Consensus 36 ~~~~~~l~~l~~~Gl-l~~~~~~l~lT 61 (66)
T PF06969_consen 36 EEFQKELEELQEDGL-LEIDGGRLRLT 61 (66)
T ss_dssp HH-HHHHHHHHHTTS-EEE-SSEEEE-
T ss_pred HHHHHHHHHHHHCCC-EEEeCCEEEEC
Confidence 357899999999999 98888887764
No 81
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=20.52 E-value=3.9e+02 Score=20.25 Aligned_cols=24 Identities=4% Similarity=0.138 Sum_probs=11.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHH
Q 032501 73 QLNASRIKVLQAQDDLVSNMMEAA 96 (139)
Q Consensus 73 ~~N~~RlkvL~ar~~~i~~l~~ea 96 (139)
....+|..+-..++..+..+..++
T Consensus 115 ~~~~a~~~I~~e~~~a~~~l~~~i 138 (175)
T PRK14472 115 MIASAKEEIEQEKRRALDVLRNEV 138 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555544444444433
Done!