Query 032501
Match_columns 139
No_of_seqs 104 out of 265
Neff 5.2
Searched_HMMs 29240
Date Tue Mar 26 00:36:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032501.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032501hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4efa_E V-type proton ATPase su 100.0 1.1E-38 3.9E-43 254.1 20.4 137 1-138 8-144 (233)
2 2dm9_A V-type ATP synthase sub 99.6 7.5E-16 2.6E-20 116.6 4.6 119 5-137 10-128 (198)
3 3v6i_A V-type ATP synthase sub 99.6 2.7E-13 9.1E-18 104.2 17.9 115 13-133 3-121 (187)
4 3v6i_A V-type ATP synthase sub 83.6 11 0.00039 27.8 14.1 96 7-102 8-116 (187)
5 2kk7_A V-type ATP synthase sub 69.5 9.2 0.00031 23.3 4.6 27 10-36 8-34 (52)
6 1l2p_A ATP synthase B chain; a 55.5 32 0.0011 20.8 9.0 41 15-55 12-52 (61)
7 2kk7_A V-type ATP synthase sub 53.3 17 0.00057 22.1 3.6 34 5-38 14-47 (52)
8 2dm9_A V-type ATP synthase sub 53.2 4.9 0.00017 29.2 1.3 103 8-118 28-138 (198)
9 3m91_A Proteasome-associated A 52.7 29 0.001 21.3 4.7 29 76-104 15-43 (51)
10 2pjx_C Syntaxin-4; membrane tr 51.5 4.6 0.00016 22.0 0.7 22 118-139 8-29 (29)
11 3tuf_A Stage III sporulation p 37.0 92 0.0031 24.1 6.3 52 70-122 81-146 (197)
12 3b8m_A Ferric enterobactin (en 28.9 2.1E+02 0.0073 22.5 10.4 72 2-74 129-201 (280)
13 1l2p_A ATP synthase B chain; a 27.6 1E+02 0.0035 18.4 8.9 50 18-67 4-53 (61)
14 3o2p_E Cell division control p 27.1 1.1E+02 0.0038 20.4 4.7 59 70-129 20-80 (88)
15 3tdu_C Cullin-1, CUL-1; E2:E3, 26.7 1.3E+02 0.0045 19.4 5.0 59 70-129 8-68 (77)
16 2qdq_A Talin-1; dimerisation d 22.3 77 0.0026 19.5 2.8 31 80-112 9-41 (50)
17 2k6i_A Uncharacterized protein 20.7 93 0.0032 19.5 3.0 15 20-34 34-48 (56)
18 3b8o_A Lipopolysaccharide bios 20.4 3.1E+02 0.01 21.3 9.2 74 2-76 114-188 (265)
No 1
>4efa_E V-type proton ATPase subunit E; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_J 2kz9_A
Probab=100.00 E-value=1.1e-38 Score=254.12 Aligned_cols=137 Identities=31% Similarity=0.522 Sum_probs=134.7
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHhhhHHHHH
Q 032501 1 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIK 80 (139)
Q Consensus 1 m~d~ev~~qi~~Mv~FI~qEA~EKA~EI~~kA~Eef~iEK~~lV~~ek~kI~~~yekK~kq~e~~kkI~~S~~~N~~Rlk 80 (139)
|||+||++||+||++||++||++||+||..+|++||++||+++|++++.+|+.+|++++++++++++|..|+..|++|++
T Consensus 8 l~~~~v~~~i~~m~~fI~qEA~eKA~EI~~kAeeE~~~ek~~~v~~~~~~i~~~~ek~~kq~e~~~~i~~S~~~~~aR~~ 87 (233)
T 4efa_E 8 LTPNQVNDELNKMQAFIRKEAEEKAKEIQLKADQEYEIEKTNIVRNETNNIDGNFKSKLKKAMLSQQITKSTIANKMRLK 87 (233)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHhhhhhhhhcCcceeeeccCC
Q 032501 81 VLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQVSGIKLVFPLFCVFSISH 138 (139)
Q Consensus 81 vL~ar~~~i~~l~~ea~~kL~~~~~d~~~Y~~lL~~LI~Qgl~ikL~e~~v~v~~~~~ 138 (139)
+|.+|+++|+++|++|+++|..+++|+..|+.+|.+||+||+ ..|.+|+|.|+++.+
T Consensus 88 vL~ar~e~i~~v~~~a~~~L~~~~~d~~~Y~~lL~~Li~eal-~~l~e~~v~V~~~~~ 144 (233)
T 4efa_E 88 VLSAREQSLDGIFEETKEKLSGIANNRDEYKPILQSLIVEAL-LKLLEPKAIVKALER 144 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH-HHHCCSEEEEEECTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH-HhcCCCcEEEEecHh
Confidence 999999999999999999999999999999999999999999 999999999998754
No 2
>2dm9_A V-type ATP synthase subunit E; A-ATPase, structural genomics, NPPSFA, national project on P structural and functional analyses; 1.85A {Pyrococcus horikoshii} SCOP: d.81.4.1 PDB: 2dma_A 4dt0_A
Probab=99.58 E-value=7.5e-16 Score=116.59 Aligned_cols=119 Identities=20% Similarity=0.280 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHhhhHHHHHHHHH
Q 032501 5 DVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQA 84 (139)
Q Consensus 5 ev~~qi~~Mv~FI~qEA~EKA~EI~~kA~Eef~iEK~~lV~~ek~kI~~~yekK~kq~e~~kkI~~S~~~N~~RlkvL~a 84 (139)
++-.+.+.|.+||.+||+++|++|...|.++|+.++.+++++.. ++++..+++..|+..|+.|..++.+
T Consensus 10 ~il~~A~~~a~~il~eA~~~a~~i~~~a~~e~~~~~~~~~~~a~-----------~e~~~~~~~~~s~~~~~~r~~~l~~ 78 (198)
T 2dm9_A 10 EINKEAERKIEYILNEARQQAEKIKEEARRNAEAKAEWIIRRAK-----------TQAELEKQRIIANARLEVRRKRLAI 78 (198)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567889999999999999999999999999999999998884 5567788899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHhhhhhhhhcCcceeeeccC
Q 032501 85 QDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQVSGIKLVFPLFCVFSIS 137 (139)
Q Consensus 85 r~~~i~~l~~ea~~kL~~~~~d~~~Y~~lL~~LI~Qgl~ikL~e~~v~v~~~~ 137 (139)
|+++++.++..|.+.|..++ ++.|+.+|.+||.+|+ ..+.++.|.|+++.
T Consensus 79 ~~ev~~~~~~~a~~~l~~l~--~~~y~~~l~~li~e~~-~~~~~~~v~i~v~~ 128 (198)
T 2dm9_A 79 QEEIISSVLEEVKRRLETMS--EDEYFESVKALLKEAI-KELNEKKVRVMSNE 128 (198)
T ss_dssp --CHHHHHHHHHHHHHHHCC--HHHHHHHHHHHHHHHH-HHHTCSEEEEECCH
T ss_pred HHHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHH-HHcCCCCEEEEECH
Confidence 99999999999999999954 5589999999999999 88999999999875
No 3
>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E 3j0j_J
Probab=99.57 E-value=2.7e-13 Score=104.25 Aligned_cols=115 Identities=12% Similarity=0.105 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhhHHHHHHHHHhHhhhHHHHHHHHHHHHH
Q 032501 13 MVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERK----EKQVEIRKKIEYSMQLNASRIKVLQAQDDL 88 (139)
Q Consensus 13 Mv~FI~qEA~EKA~EI~~kA~Eef~iEK~~lV~~ek~kI~~~yekK----~kq~e~~kkI~~S~~~N~~RlkvL~ar~~~ 88 (139)
..+-|..||+.+|++|...|+++- ..++...+.+....++.. .++......+..|+..+++|.++|.+|+++
T Consensus 3 ~~~~l~~eA~~~a~~I~~eA~~~a----~~I~~eA~~eA~~~~~~~~~~~e~e~~~~~~r~~s~a~le~r~~~L~ar~el 78 (187)
T 3v6i_A 3 LEAILSQEVEAEIQALLQEAEAKA----EAVKREAEEKAKALLQARERALEAQYRAALRRAESAGELLVATARTQARGEV 78 (187)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666665553 345555555555554433 344455556789999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccChhHHHHHHHHHHhhhhhhhhcCcceee
Q 032501 89 VSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQVSGIKLVFPLFCV 133 (139)
Q Consensus 89 i~~l~~ea~~kL~~~~~d~~~Y~~lL~~LI~Qgl~ikL~e~~v~v 133 (139)
++++|++|+++|..++.| ..|+.+|.+||.||+ ..|.+|.|+|
T Consensus 79 i~~v~~~a~~~L~~~~~~-~~Y~~~L~~Li~ea~-~~l~~~~~vv 121 (187)
T 3v6i_A 79 LEEVRRRVREALEALPQK-PEWPEVVRKLALEAL-EALPGAKALV 121 (187)
T ss_dssp HHHHHHHHHHHHHHGGGS-TTHHHHHHHHHHHHH-HHCTTCCEEE
T ss_pred HHHHHHHHHHHHHhhhCC-ccHHHHHHHHHHHHH-HHcCCCCeEE
Confidence 999999999999999998 479999999999999 9999999977
No 4
>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E 3j0j_J
Probab=83.57 E-value=11 Score=27.78 Aligned_cols=96 Identities=19% Similarity=0.145 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHh--------hhHHH
Q 032501 7 SKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQ--------LNASR 78 (139)
Q Consensus 7 ~~qi~~Mv~FI~qEA~EKA~EI~~kA~Eef~iEK~~lV~~ek~kI~~~yekK~kq~e~~kkI~~S~~--------~N~~R 78 (139)
..+-+.-.+-|..+|+.+|++|-..|.++-.-.+..............+++....+.++.+...... .+.+|
T Consensus 8 ~~eA~~~a~~I~~eA~~~a~~I~~eA~~eA~~~~~~~~~~~e~e~~~~~~r~~s~a~le~r~~~L~ar~eli~~v~~~a~ 87 (187)
T 3v6i_A 8 SQEVEAEIQALLQEAEAKAEAVKREAEEKAKALLQARERALEAQYRAALRRAESAGELLVATARTQARGEVLEEVRRRVR 87 (187)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566678899999999999999999999999998888888888888888887777766655443 34444
Q ss_pred HHHHHH-----HHHHHHHHHHHHHHHHHh
Q 032501 79 IKVLQA-----QDDLVSNMMEAASKEVLN 102 (139)
Q Consensus 79 lkvL~a-----r~~~i~~l~~ea~~kL~~ 102 (139)
-++... ..++|..++.++-..|..
T Consensus 88 ~~L~~~~~~~~Y~~~L~~Li~ea~~~l~~ 116 (187)
T 3v6i_A 88 EALEALPQKPEWPEVVRKLALEALEALPG 116 (187)
T ss_dssp HHHHHGGGSTTHHHHHHHHHHHHHHHCTT
T ss_pred HHHHhhhCCccHHHHHHHHHHHHHHHcCC
Confidence 443322 457888888888776643
No 5
>2kk7_A V-type ATP synthase subunit E; A1AO ATP synthase, ATP synthesis, hydrogen ION transport, ION transport, transport, hydrolase; NMR {Methanocaldococcus jannaschii}
Probab=69.48 E-value=9.2 Score=23.35 Aligned_cols=27 Identities=30% Similarity=0.348 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 032501 10 IQQMVRFIRQEAEEKANEISVSAEEEF 36 (139)
Q Consensus 10 i~~Mv~FI~qEA~EKA~EI~~kA~Eef 36 (139)
+..++.=|..+|+.+|..|-..|+.+-
T Consensus 8 le~i~~kI~~eA~~eA~~Il~eA~~eA 34 (52)
T 2kk7_A 8 VDKIKSKILDDAKAEANKIISEAEAEK 34 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788888899999999988888775
No 6
>1l2p_A ATP synthase B chain; alpha helix, hydrolase; 1.55A {Escherichia coli} SCOP: f.23.21.1
Probab=55.46 E-value=32 Score=20.79 Aligned_cols=41 Identities=22% Similarity=0.324 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032501 15 RFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEY 55 (139)
Q Consensus 15 ~FI~qEA~EKA~EI~~kA~Eef~iEK~~lV~~ek~kI~~~y 55 (139)
..|..+|+..+..|...+..+-..|-.+++.+-+..|..+-
T Consensus 12 ~~Ii~~A~~~a~~~~~e~~~~A~~ea~~i~~~A~~eie~ek 52 (61)
T 1l2p_A 12 QVIIEQANKRRSQILDEAKAEAEQERTKIVAQAQAEIEAER 52 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444445554444444443
No 7
>2kk7_A V-type ATP synthase subunit E; A1AO ATP synthase, ATP synthesis, hydrogen ION transport, ION transport, transport, hydrolase; NMR {Methanocaldococcus jannaschii}
Probab=53.28 E-value=17 Score=22.14 Aligned_cols=34 Identities=24% Similarity=0.188 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 032501 5 DVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNI 38 (139)
Q Consensus 5 ev~~qi~~Mv~FI~qEA~EKA~EI~~kA~Eef~i 38 (139)
++..+-+.=..-|..+|+.+|++|-..|..+-.-
T Consensus 14 kI~~eA~~eA~~Il~eA~~eA~~Ii~eA~~~Ae~ 47 (52)
T 2kk7_A 14 KILDDAKAEANKIISEAEAEKAKILEKAKEEAEK 47 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556667789999999999999999887643
No 8
>2dm9_A V-type ATP synthase subunit E; A-ATPase, structural genomics, NPPSFA, national project on P structural and functional analyses; 1.85A {Pyrococcus horikoshii} SCOP: d.81.4.1 PDB: 2dma_A 4dt0_A
Probab=53.18 E-value=4.9 Score=29.17 Aligned_cols=103 Identities=19% Similarity=0.280 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHhhhHHHHHH--HH--
Q 032501 8 KQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKV--LQ-- 83 (139)
Q Consensus 8 ~qi~~Mv~FI~qEA~EKA~EI~~kA~Eef~iEK~~lV~~ek~kI~~~yekK~kq~e~~kkI~~S~~~N~~Rlkv--L~-- 83 (139)
.+...+++=...+|+.....+...|..+-..++...+.......+..+.....++ .....+.++-.+ +.
T Consensus 28 ~~a~~i~~~a~~e~~~~~~~~~~~a~~e~~~~~~~~~s~~~~~~r~~~l~~~~ev-------~~~~~~~a~~~l~~l~~~ 100 (198)
T 2dm9_A 28 QQAEKIKEEARRNAEAKAEWIIRRAKTQAELEKQRIIANARLEVRRKRLAIQEEI-------ISSVLEEVKRRLETMSED 100 (198)
T ss_dssp -----------------------------------------------------CH-------HHHHHHHHHHHHHHCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhcCHH
Confidence 3444444444555555556677777777666666665554444444333322221 111122222222 22
Q ss_pred HHHHHHHHHHHHHHHHHHh----hccChhHHHHHHHHHH
Q 032501 84 AQDDLVSNMMEAASKEVLN----VSRDHNSYKKLLKGLI 118 (139)
Q Consensus 84 ar~~~i~~l~~ea~~kL~~----~~~d~~~Y~~lL~~LI 118 (139)
...++|..++.++-..+.. +.-+|..|. ++..++
T Consensus 101 ~y~~~l~~li~e~~~~~~~~~v~i~v~~~D~~-~v~~~~ 138 (198)
T 2dm9_A 101 EYFESVKALLKEAIKELNEKKVRVMSNEKTLG-LIASRI 138 (198)
T ss_dssp HHHHHHHHHHHHHHHHHTCSEEEEECCHHHHH-HHHHTH
T ss_pred HHHHHHHHHHHHHHHHcCCCCEEEEECHhHHH-HHHHHH
Confidence 3458888999988887742 344565444 335554
No 9
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=52.68 E-value=29 Score=21.28 Aligned_cols=29 Identities=21% Similarity=0.401 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 032501 76 ASRIKVLQAQDDLVSNMMEAASKEVLNVS 104 (139)
Q Consensus 76 ~~RlkvL~ar~~~i~~l~~ea~~kL~~~~ 104 (139)
+.++.-|.+|+.-|...+.+|+.+|..+.
T Consensus 15 ~~~l~~L~~rN~rL~~~L~~AR~el~~Lk 43 (51)
T 3m91_A 15 EARIDSLAARNSKLMETLKEARQQLLALR 43 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677899999999999999999997763
No 10
>2pjx_C Syntaxin-4; membrane trafficking, SM protein, snare proteins, endocytosis/exocytosis complex; 3.15A {Mus musculus}
Probab=51.48 E-value=4.6 Score=21.97 Aligned_cols=22 Identities=23% Similarity=-0.026 Sum_probs=18.8
Q ss_pred HhhhhhhhhcCcceeeeccCCC
Q 032501 118 IVQVSGIKLVFPLFCVFSISHS 139 (139)
Q Consensus 118 I~Qgl~ikL~e~~v~v~~~~~~ 139 (139)
+.||=+|.=.|++|+|+++-||
T Consensus 8 lrqgdnisddedevrvalvvhs 29 (29)
T 2pjx_C 8 LRQGDNISDDEDEVRVALVVHS 29 (29)
T ss_pred hhcCCCCCCccceeEEEEEeeC
Confidence 4578789999999999998886
No 11
>3tuf_A Stage III sporulation protein AH; intercellular signalling, intercellular channel, sporulation engulfment and signalling, intercellular space; 2.26A {Bacillus subtilis} PDB: 3uz0_A
Probab=36.98 E-value=92 Score=24.07 Aligned_cols=52 Identities=17% Similarity=0.114 Sum_probs=37.3
Q ss_pred HhHhhhHHHHHHHHHHHHHHHHHH-------------HHHHHHHHhhccChhHHHHHHHHHHh-hhh
Q 032501 70 YSMQLNASRIKVLQAQDDLVSNMM-------------EAASKEVLNVSRDHNSYKKLLKGLIV-QVS 122 (139)
Q Consensus 70 ~S~~~N~~RlkvL~ar~~~i~~l~-------------~ea~~kL~~~~~d~~~Y~~lL~~LI~-Qgl 122 (139)
-++....+||.+=..|.+.++.|. .+|.++|..++... .....+..||. .|+
T Consensus 81 ~~~yFae~RL~REq~Rsk~~E~L~eII~n~n~S~eeK~eA~~ql~eLt~~~-ekE~~IE~LLKAKGF 146 (197)
T 3tuf_A 81 DDDLFTTYRLDLEDARSKEREELNAIVSSDDATAKEKSEAYDKMTALSEVE-GTEKQLETLIKTQGY 146 (197)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCC
Confidence 445678899999999988887764 56777787777554 46667777776 554
No 12
>3b8m_A Ferric enterobactin (enterochelin) transport; WZZ, FEPE, bacterial polysaccharide CO-polymerase, metal transport, biosynthetic protein; 2.70A {Escherichia coli} SCOP: d.58.60.1 PDB: 3b8n_A 4e2l_A
Probab=28.90 E-value=2.1e+02 Score=22.52 Aligned_cols=72 Identities=8% Similarity=0.204 Sum_probs=51.2
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHhh
Q 032501 2 NDADVSKQIQQMVRFIRQEAEEKA-NEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQL 74 (139)
Q Consensus 2 ~d~ev~~qi~~Mv~FI~qEA~EKA-~EI~~kA~Eef~iEK~~lV~~ek~kI~~~yekK~kq~e~~kkI~~S~~~ 74 (139)
|+.+.++-+.+.++|+-+.+.... .+|...-...=...+. -+..+.......++.++.+++-.-+|+.+.-+
T Consensus 129 t~~~A~~lL~~YI~fv~~~~~~~l~~~l~~~i~~r~~~l~~-qi~~~~~~ak~~~~~~I~rL~~AL~IA~aagI 201 (280)
T 3b8m_A 129 TSEEAQTVLSGYIDYISALVVKESIENVRNKLEIKTQFEKE-KLAQDRIKMKNQLDANIQRLNYSLDIANAAGI 201 (280)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 568899999999999999998877 6776555533222233 34445556777888888888888888877433
No 13
>1l2p_A ATP synthase B chain; alpha helix, hydrolase; 1.55A {Escherichia coli} SCOP: f.23.21.1
Probab=27.63 E-value=1e+02 Score=18.39 Aligned_cols=50 Identities=12% Similarity=0.089 Sum_probs=27.3
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 032501 18 RQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKK 67 (139)
Q Consensus 18 ~qEA~EKA~EI~~kA~Eef~iEK~~lV~~ek~kI~~~yekK~kq~e~~kk 67 (139)
+.+|+..|.+|-..|..+-+-....++..-........+.-..+++.++.
T Consensus 4 L~~Ar~ea~~Ii~~A~~~a~~~~~e~~~~A~~ea~~i~~~A~~eie~ek~ 53 (61)
T 1l2p_A 4 LKKAKAEAQVIIEQANKRRSQILDEAKAEAEQERTKIVAQAQAEIEAERK 53 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666665555555555554444444444444444433
No 14
>3o2p_E Cell division control protein 53; ligase, cell cycle; 2.23A {Saccharomyces cerevisiae} PDB: 3o6b_B
Probab=27.11 E-value=1.1e+02 Score=20.38 Aligned_cols=59 Identities=12% Similarity=0.180 Sum_probs=41.5
Q ss_pred HhHhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHh-hccChhHHHHHHHHHHhhhhhhhhcCc
Q 032501 70 YSMQLNASRIKVLQAQDDL-VSNMMEAASKEVLN-VSRDHNSYKKLLKGLIVQVSGIKLVFP 129 (139)
Q Consensus 70 ~S~~~N~~RlkvL~ar~~~-i~~l~~ea~~kL~~-~~~d~~~Y~~lL~~LI~Qgl~ikL~e~ 129 (139)
+...+.++=.++|++|-.+ -++|+.++-.+|.. ...++...+.-+..||-.+. +.=.+.
T Consensus 20 R~~~iqAaIVRIMK~rK~l~h~~Lv~ev~~ql~~rF~p~~~~IKk~IE~LIekeY-leR~~~ 80 (88)
T 3o2p_E 20 RQIFLEACIVRIMKAKRNLPHTTLVNECIAQSHQRFNAKVSMVKRAIDSLIQKGY-LQRGDD 80 (88)
T ss_dssp HHHHHHHHHHHHHHHHSEEEHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTS-EEECTT
T ss_pred hhhhhheeeehhhcccccccHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhhhH-HhcCCC
Confidence 4455677778999998433 24555566666653 57788889999999999887 655443
No 15
>3tdu_C Cullin-1, CUL-1; E2:E3, ligase-protein binding complex; 1.50A {Homo sapiens} PDB: 3tdz_C
Probab=26.71 E-value=1.3e+02 Score=19.41 Aligned_cols=59 Identities=12% Similarity=0.142 Sum_probs=42.4
Q ss_pred HhHhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHh-hccChhHHHHHHHHHHhhhhhhhhcCc
Q 032501 70 YSMQLNASRIKVLQAQDDL-VSNMMEAASKEVLN-VSRDHNSYKKLLKGLIVQVSGIKLVFP 129 (139)
Q Consensus 70 ~S~~~N~~RlkvL~ar~~~-i~~l~~ea~~kL~~-~~~d~~~Y~~lL~~LI~Qgl~ikL~e~ 129 (139)
+...+..+=.++|++|-.+ -++|+.++-.+|.. ...++...+.-+..||-.+. +.=.+.
T Consensus 8 R~~~i~AaIVRIMK~rK~l~h~~Lv~ev~~ql~~rF~p~~~~IKk~IE~LIereY-l~R~~~ 68 (77)
T 3tdu_C 8 RKLLIQAAIVRIMKMRKVLKHQQLLGEVLTQLSSRFKPRVPVIKKCIDILIEKEY-LERVDG 68 (77)
T ss_dssp HHHHHHHHHHHHHHHHSEEEHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTS-EEEETT
T ss_pred hhheEeeEEeeeecccceeeHHHHHHHHHHHHhCcCCCCHHHHHHHHHHHHhhhH-hhcCCC
Confidence 3445667778999998443 44666666666764 57788889999999999888 665544
No 16
>2qdq_A Talin-1; dimerisation domain, C-terminal actin binding site, ABS3, latch domain, structural protein; 2.20A {Mus musculus}
Probab=22.32 E-value=77 Score=19.46 Aligned_cols=31 Identities=23% Similarity=0.520 Sum_probs=20.0
Q ss_pred HHHHHHHHHH--HHHHHHHHHHHHhhccChhHHHH
Q 032501 80 KVLQAQDDLV--SNMMEAASKEVLNVSRDHNSYKK 112 (139)
Q Consensus 80 kvL~ar~~~i--~~l~~ea~~kL~~~~~d~~~Y~~ 112 (139)
+.|.+|+.+| +.=|++|+.+|..+-+. +|+.
T Consensus 9 qEi~Aqe~iLr~ErELEeAr~~La~iR~~--kY~~ 41 (50)
T 2qdq_A 9 QIIAAQEEMLRKERELEEARKKLAQIRQQ--QYKF 41 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--C---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhc
Confidence 3456666665 35689999999998665 6775
No 17
>2k6i_A Uncharacterized protein MJ0223; H subunit, A1AO ATP synthase, V1VO ATPase, F1FO ATP synthase, structural protein; NMR {Methanocaldococcus jannaschii}
Probab=20.70 E-value=93 Score=19.49 Aligned_cols=15 Identities=40% Similarity=0.523 Sum_probs=6.3
Q ss_pred HHHHHHHhhHHHHHH
Q 032501 20 EAEEKANEISVSAEE 34 (139)
Q Consensus 20 EA~EKA~EI~~kA~E 34 (139)
||++.+++|...|.+
T Consensus 34 eA~~ea~~ii~eAre 48 (56)
T 2k6i_A 34 EAKNRAEQIKAEAIE 48 (56)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444433
No 18
>3b8o_A Lipopolysaccharide biosynthesis protein WZZE; bacterial polysaccharide CO-polymerase, inner MEM lipopolysaccharide biosynthesis, membrane; 2.40A {Escherichia coli} SCOP: d.58.60.1
Probab=20.35 E-value=3.1e+02 Score=21.29 Aligned_cols=74 Identities=19% Similarity=0.238 Sum_probs=43.4
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHhhhH
Q 032501 2 NDADVSKQIQQMVRFIRQEAEEKA-NEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNA 76 (139)
Q Consensus 2 ~d~ev~~qi~~Mv~FI~qEA~EKA-~EI~~kA~Eef~iEK~~lV~~ek~kI~~~yekK~kq~e~~kkI~~S~~~N~ 76 (139)
|+.+.++-+.+-++|+-+.+.... .+|...-...=...+. -+..+.......++.++.+++-.-+|+.+.-+++
T Consensus 114 t~~~A~~lL~~YI~~v~~~~~~~l~~~l~~~~~~r~~~l~~-qi~~~~~~ak~~~~~~i~rl~~AL~IA~aagI~k 188 (265)
T 3b8o_A 114 TAPDANNLLRQYVAFASQRAASHLNDELKGAWAARTIQMKA-QVKRQEEVAKAIYDRRMNSIEQALKIAEQHNISR 188 (265)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHC------------
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 568899999999999999998877 5666555432222222 3344555677778888888887777876655433
Done!