Citrus Sinensis ID: 032502

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------14
Protein Sequence
MGTCLSKRQHDEEDGEHPVEFAGGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKVAAAVDSVVPSQK
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccEEEEEcHHHHHHHHHHHHccccEEEEEEEccccHHHHHHHHHHHHHHHHccccEEEEEEccccHHHHHHcccccccEEEEEEccEEEEEEEcccHHHHHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccEEEEEcHHHHHHHHHHHHcccccEEEEEEccccHHHHHHHHHHHHHHHHccccEEEEEEccccHHHHHHcccccccEEEEEEccEEEEEEEcccHHHHHHHHHHHHcHHHHccc
Coil and Loop (DISEMBL)
mgtclskrqhdeedgehpvefaggnvslvtTKDIWDQKMSEASKEGKIVIANfsatwcgpcrmiapffselsekypSLMFLLVDVDELvefstswdikatptffflkdgqqvdklvgankpeLQKKVAAAVDSVVPSQK
Flexible Loop (DISEMBL)
mgtclskrqhdeedgehpvefaggnvsLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPelqkkvaaavdsvvpsqk
Low Complexity Region (SEG)
MGTCLSKRQHDEEDGEHPVEFAGGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKVAAAVDSVVPSQK
Disordered region (IsUnstruct)
*********************AGGNVSLVTTKDIWDQK******EGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVG**********************
Disordered Region (DISOPRED)
****************************VTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKVAA**********
Disordered Region (DISEMBL)
****************HPVEFAGGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKVAAAVDSVVPSQK
Disordered Region (DISPRO)
***********************GNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKVAAAVDSVV****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGTCLSKRQHDEEDGEHPVEFAGGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKVAAAVDSVVPSQK
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	139	2.2.26 [Sep-21-2011]
P85801	139	Thioredoxin H-type OS=Pop	N/A	no	1.0	1.0	0.712	2e-57
Q9C9Y6	140	Thioredoxin H9 OS=Arabido	yes	no	0.956	0.95	0.716	4e-53
Q9AS75	131	Thioredoxin H4-1 OS=Oryza	yes	no	0.935	0.992	0.654	4e-50
Q0DKF1	132	Thioredoxin H4-2 OS=Oryza	no	no	0.935	0.984	0.626	6e-47
Q75GM1	135	Thioredoxin H5 OS=Oryza s	no	no	0.877	0.903	0.492	2e-32
Q9LXZ8	154	Putative thioredoxin H10	no	no	0.784	0.707	0.550	6e-32
Q8GXV2	154	Thioredoxin-like protein	no	no	0.928	0.837	0.441	3e-30
O65049	125	Thioredoxin H-type OS=Pic	N/A	no	0.762	0.848	0.509	3e-27
A2YIW7	122	Thioredoxin H-type OS=Ory	N/A	no	0.820	0.934	0.464	8e-27
Q0D840	122	Thioredoxin H1 OS=Oryza s	no	no	0.820	0.934	0.464	8e-27

>sp|P85801|TRXH_POPJC Thioredoxin H-type OS=Populus jackii PE=1 SV=1

 Score =  220 bits (561), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 99/139 (71%), Positives = 119/139 (85%)

Query: 1   MGTCLSKRQHDEEDGEHPVEFAGGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGP 60
           MG CL+KR HD +D E  +E AGGNV L+TTK+ WDQK+SEAS++GKIV+ANFSA WCGP
Sbjct: 1   MGLCLAKRNHDADDDEPHIELAGGNVHLITTKERWDQKLSEASRDGKIVLANFSARWCGP 60

Query: 61  CRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANK 120
           C+ IAP++ ELSE YPSLMFL++DVDEL +FS SW+IKATPTFFFL+DGQQVDKLVGANK
Sbjct: 61  CKQIAPYYIELSENYPSLMFLVIDVDELSDFSASWEIKATPTFFFLRDGQQVDKLVGANK 120

Query: 121 PELQKKVAAAVDSVVPSQK 139
           PEL KK+ A +DS+ PS K
Sbjct: 121 PELHKKITAILDSLPPSDK 139

Participates in various redox reactions through the reversible oxidation of the active center dithiol to a disulfide. The H form is known to activate a number of cytosolic enzymes.
Populus jackii (taxid: 640484)

>sp|Q9C9Y6|TRXH9_ARATH Thioredoxin H9 OS=Arabidopsis thaliana GN=TRX9 PE=1 SV=1

 Score =  206 bits (524), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 96/134 (71%), Positives = 118/134 (88%), Gaps = 1/134 (0%)

Query: 1   MGTCLSKRQHDEEDGEHPVEFAGGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGP 60
           MG+C+SK + D+ D  H VEF+GGNV L+TTK+ WD K++EA ++GKIV+ANFSATWCGP
Sbjct: 1   MGSCVSKGKGDD-DSVHNVEFSGGNVHLITTKESWDDKLAEADRDGKIVVANFSATWCGP 59

Query: 61  CRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANK 120
           C+++APFF ELSEK+ SLMFLLVDVDEL +FS+SWDIKATPTFFFLK+GQQ+ KLVGANK
Sbjct: 60  CKIVAPFFIELSEKHSSLMFLLVDVDELSDFSSSWDIKATPTFFFLKNGQQIGKLVGANK 119

Query: 121 PELQKKVAAAVDSV 134
           PELQKKV + +DSV
Sbjct: 120 PELQKKVTSIIDSV 133

Probable thiol-disulfide oxidoreductase that may play a role in intercellular communication due to its ability to move from cell to cell.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9AS75|TRH41_ORYSJ Thioredoxin H4-1 OS=Oryza sativa subsp. japonica GN=Os01g0168200 PE=2 SV=1

 Score =  196 bits (497), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 87/133 (65%), Positives = 113/133 (84%), Gaps = 3/133 (2%)

Query: 1   MGTCLSKRQHDEEDGEHPVEFAGGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGP 60
           MG+C+ K + DEED    ++F GGNV +++ K+ WD K++EA+K+GKIVIANFSA WCGP
Sbjct: 1   MGSCVGKERSDEED---KIDFKGGNVHVISNKENWDHKIAEANKDGKIVIANFSAAWCGP 57

Query: 61  CRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANK 120
           CR+IAP ++E+S+ YP  MFL +DVDEL++FS+SWDI+ATPTFFFLK+G+QVDKLVGANK
Sbjct: 58  CRVIAPVYAEMSQTYPQFMFLTIDVDELMDFSSSWDIRATPTFFFLKNGEQVDKLVGANK 117

Query: 121 PELQKKVAAAVDS 133
           PEL+KKVAA  DS
Sbjct: 118 PELEKKVAALADS 130

Probable thiol-disulfide oxidoreductase that may be involved in the redox regulation of a number of cytosolic enzymes.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q0DKF1|TRH42_ORYSJ Thioredoxin H4-2 OS=Oryza sativa subsp. japonica GN=Os05g0169000 PE=2 SV=1

 Score =  185 bits (470), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 84/134 (62%), Positives = 113/134 (84%), Gaps = 4/134 (2%)

Query: 1   MGTCLSK-RQHDEEDGEHPVEFAGGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCG 59
           MG C+ K R+H EED    ++F GGNV ++T+K+ WD+K+ EA+K+GKIV+ANFSA+WCG
Sbjct: 1   MGGCVGKGRRHIEED---KLDFKGGNVHVITSKEDWDRKIEEANKDGKIVVANFSASWCG 57

Query: 60  PCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGAN 119
           PCR+IAP ++E+S+ YP LMFL +DVD+L++FS+SWDI+ATPTFFF+K+ +QVDKLVGAN
Sbjct: 58  PCRVIAPIYAEMSKTYPQLMFLTIDVDDLMDFSSSWDIRATPTFFFIKNEKQVDKLVGAN 117

Query: 120 KPELQKKVAAAVDS 133
           KPEL+KKV A  D 
Sbjct: 118 KPELEKKVQALADG 131

Probable thiol-disulfide oxidoreductase that may be involved in the redox regulation of a number of cytosolic enzymes.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q75GM1|TRXH5_ORYSJ Thioredoxin H5 OS=Oryza sativa subsp. japonica GN=Os05g0480200 PE=2 SV=1

 Score =  137 bits (344), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 62/126 (49%), Positives = 86/126 (68%), Gaps = 4/126 (3%)

Query: 1   MGTCLSKRQHDEEDGEHPVEFAGGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGP 60
           MG C S       D E  ++++GGNV+LVT +  WD  M E ++ GK V+  FSA WC P
Sbjct: 1   MGCCGSSTV----DAEEHLDYSGGNVTLVTDQKNWDNTMEEVAEHGKTVVLKFSAIWCTP 56

Query: 61  CRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANK 120
           CR  AP F+ELS KYP ++F+ VDVDE+ E  T +D++ATPTF F+K+ +++DKLVG N 
Sbjct: 57  CRNAAPLFAELSLKYPDIVFVSVDVDEMPELVTQYDVRATPTFIFMKNNEEIDKLVGGNH 116

Query: 121 PELQKK 126
            +LQ+K
Sbjct: 117 EDLQEK 122

Probable thiol-disulfide oxidoreductase that may be involved in the redox regulation of a number of cytosolic enzymes.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9LXZ8|TRH10_ARATH Putative thioredoxin H10 OS=Arabidopsis thaliana GN=At3g56420 PE=3 SV=2

 Score =  135 bits (341), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 60/109 (55%), Positives = 82/109 (75%)

Query: 24  GNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLV 83
           G V  V+  + W++K++EA+  GKI++ NFSA WC PC+ I P F +L+ +YPS++F+ V
Sbjct: 40  GKVHPVSRIEKWEEKITEANNHGKILVVNFSAPWCVPCKKIEPVFRDLASRYPSMIFVTV 99

Query: 84  DVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKVAAAVD 132
           DV+EL EFS  W+++ATPT  FLKDG+Q+DKLVGA   ELQKK AAA D
Sbjct: 100 DVEELAEFSNEWNVEATPTVVFLKDGRQMDKLVGAETSELQKKTAAAAD 148

Probable thiol-disulfide oxidoreductase that may be involved in the redox regulation of a number of cytosolic enzymes.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GXV2|CXXS2_ARATH Thioredoxin-like protein CXXS2 OS=Arabidopsis thaliana GN=CXXS2 PE=2 SV=1

 Score =  130 bits (326), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 57/129 (44%), Positives = 85/129 (65%)

Query: 4   CLSKRQHDEEDGEHPVEFAGGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRM 63
           C ++R   +   +    F  G V  V+  + W++K++EA+  GKI++ NF A+WC P + 
Sbjct: 20  CCNRRNKTQARSQKGSYFIKGKVHPVSRMEKWEEKITEANSHGKILVVNFKASWCLPSKT 79

Query: 64  IAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPEL 123
           I P + EL+  Y S++F+ +DV+EL EFS  W++ ATPT  FLKDG+Q+DKLVG +  EL
Sbjct: 80  ILPIYQELASTYTSMIFVTIDVEELAEFSHEWNVDATPTVVFLKDGRQMDKLVGGDAAEL 139

Query: 124 QKKVAAAVD 132
           QKK AAA +
Sbjct: 140 QKKTAAAAN 148

Possesses low disulfide reductase activity, but efficient protein disulfide isomerase activity. Does not possess deglutathionylation activity.

Arabidopsis thaliana (taxid: 3702)

>sp|O65049|TRXH_PICMA Thioredoxin H-type OS=Picea mariana GN=SB09 PE=2 SV=1

 Score =  120 bits (300), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 54/106 (50%), Positives = 75/106 (70%)

Query: 22  AGGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFL 81
           A GNV    + + W  K+ EA    ++V  +F+ATWCGPCR+I P F ELS+K+P + FL
Sbjct: 2   AEGNVFACHSTEGWRSKLQEAIDTKRLVAVDFTATWCGPCRVIGPVFVELSKKFPEIFFL 61

Query: 82  LVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKV 127
            VDVDEL + +  WD++A PTF F+KDG+ VDK+VGA K +L++KV
Sbjct: 62  KVDVDELRDVAQEWDVEAMPTFIFIKDGKAVDKVVGAKKDDLERKV 107

Participates in various redox reactions through the reversible oxidation of the active center dithiol to a disulfide. The H form is known to activate a number of cytosolic enzymes.

Picea mariana (taxid: 3335)

>sp|A2YIW7|TRXH_ORYSI Thioredoxin H-type OS=Oryza sativa subsp. indica GN=TRXH PE=1 SV=1

 Score =  118 bits (296), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 53/114 (46%), Positives = 78/114 (68%)

Query: 24  GNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLV 83
           G V     KD +D +M++A + GK+VI +F+A+WCGPCR IAP F+E ++K+P  +FL V
Sbjct: 6   GVVIACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAVFLKV 65

Query: 84  DVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKVAAAVDSVVPS 137
           DVDEL E +  ++++A PTF F+KDG + DK+VGA K +LQ  +   V +   S
Sbjct: 66  DVDELKEVAEKYNVEAMPTFLFIKDGAEADKVVGARKDDLQNTIVKHVGATAAS 119

Participates in various redox reactions through the reversible oxidation of the active center dithiol to a disulfide. The H form is known to activate a number of cytosolic enzymes.

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q0D840|TRXH1_ORYSJ Thioredoxin H1 OS=Oryza sativa subsp. japonica GN=TRXH PE=1 SV=1

 Score =  118 bits (296), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 53/114 (46%), Positives = 78/114 (68%)

Query: 24  GNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLV 83
           G V     KD +D +M++A + GK+VI +F+A+WCGPCR IAP F+E ++K+P  +FL V
Sbjct: 6   GVVIACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAVFLKV 65

Query: 84  DVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKVAAAVDSVVPS 137
           DVDEL E +  ++++A PTF F+KDG + DK+VGA K +LQ  +   V +   S
Sbjct: 66  DVDELKEVAEKYNVEAMPTFLFIKDGAEADKVVGARKDDLQNTIVKHVGATAAS 119

Thiol-disulfide oxidoreductase involved in the redox regulation of MAP kinases. Under reducing conditions, inhibits MPK1 and MPK5 kinase activities. Mediates its own transport from cell-to-cell through plasmodesmata. Possesses insulin disulfide bonds reducing activity.

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	139
224091134	139	thioredoxin h [Populus trichocarpa] gi|1	1.0	1.0	0.733	5e-56
190410959	139	RecName: Full=Thioredoxin H-type; AltNam	1.0	1.0	0.712	1e-55
224140623	139	thioredoxin h [Populus trichocarpa] gi|1	1.0	1.0	0.712	1e-55
193506795	139	Chain A, Crystal Structure Of A Poplar T	1.0	1.0	0.712	4e-55
255575612	132	Thioredoxin H-type, putative [Ricinus co	0.935	0.984	0.753	1e-54
24637231	152	thioredoxin h-like protein [Nicotiana ta	0.956	0.875	0.738	2e-53
356568246	139	PREDICTED: thioredoxin H9-like [Glycine	0.964	0.964	0.708	3e-53
357477627	139	Thioredoxin H-type 9 [Medicago truncatul	0.964	0.964	0.716	4e-53
388493430	138	unknown [Lotus japonicus]	0.992	1.0	0.697	5e-53
449449851	139	PREDICTED: thioredoxin H-type-like [Cucu	0.992	0.992	0.695	8e-53

>gi|224091134|ref|XP_002309192.1| thioredoxin h [Populus trichocarpa] gi|118482588|gb|ABK93214.1| unknown [Populus trichocarpa] gi|222855168|gb|EEE92715.1| thioredoxin h [Populus trichocarpa]

 Score =  222 bits (565), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 102/139 (73%), Positives = 122/139 (87%)

Query: 1   MGTCLSKRQHDEEDGEHPVEFAGGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGP 60
           MG CL K +HD ++ E  VEFAGGNV LVTTK+ WDQK+SEAS++GKIV+ANFSATWCGP
Sbjct: 1   MGLCLDKHKHDADNDELHVEFAGGNVHLVTTKESWDQKLSEASRDGKIVLANFSATWCGP 60

Query: 61  CRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANK 120
           C+ IAPF++ELSEKYPSL+FLLVDVDEL + STSW+IKATPTFFFL+DG+Q++KLVGANK
Sbjct: 61  CKQIAPFYNELSEKYPSLLFLLVDVDELSDLSTSWEIKATPTFFFLRDGKQLEKLVGANK 120

Query: 121 PELQKKVAAAVDSVVPSQK 139
           PELQKK+ A  DS+ PS K
Sbjct: 121 PELQKKITAIADSLPPSDK 139

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|190410959|sp|P85801.1|TRXH_POPJC RecName: Full=Thioredoxin H-type; AltName: Full=Trxh4 gi|193506793|pdb|3D21|A Chain A, Crystal Structure Of A Poplar Wild-Type Thioredoxin H, Pttrxh4 gi|193506794|pdb|3D21|B Chain B, Crystal Structure Of A Poplar Wild-Type Thioredoxin H, Pttrxh4 gi|189065870|emb|CAQ56197.1| thioredoxin h4 [Populus trichocarpa x Populus deltoides]

 Score =  220 bits (561), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 99/139 (71%), Positives = 119/139 (85%)

Query: 1   MGTCLSKRQHDEEDGEHPVEFAGGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGP 60
           MG CL+KR HD +D E  +E AGGNV L+TTK+ WDQK+SEAS++GKIV+ANFSA WCGP
Sbjct: 1   MGLCLAKRNHDADDDEPHIELAGGNVHLITTKERWDQKLSEASRDGKIVLANFSARWCGP 60

Query: 61  CRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANK 120
           C+ IAP++ ELSE YPSLMFL++DVDEL +FS SW+IKATPTFFFL+DGQQVDKLVGANK
Sbjct: 61  CKQIAPYYIELSENYPSLMFLVIDVDELSDFSASWEIKATPTFFFLRDGQQVDKLVGANK 120

Query: 121 PELQKKVAAAVDSVVPSQK 139
           PEL KK+ A +DS+ PS K
Sbjct: 121 PELHKKITAILDSLPPSDK 139

Source: Populus trichocarpa x Populus deltoides

Species: Populus trichocarpa x Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140623|ref|XP_002323681.1| thioredoxin h [Populus trichocarpa] gi|118487394|gb|ABK95525.1| unknown [Populus trichocarpa] gi|222868311|gb|EEF05442.1| thioredoxin h [Populus trichocarpa]

 Score =  220 bits (561), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 99/139 (71%), Positives = 119/139 (85%)

Query: 1   MGTCLSKRQHDEEDGEHPVEFAGGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGP 60
           MG CL+KR HD +D E  +E AGGNV L+TTK+ WDQK+SEAS++GKIV+ANFSA WCGP
Sbjct: 1   MGLCLAKRNHDADDDEPHIELAGGNVHLITTKERWDQKLSEASRDGKIVLANFSARWCGP 60

Query: 61  CRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANK 120
           C+ IAP++ ELSE YPSLMFL++DVDEL +FS SW+IKATPTFFFL+DGQQVDKLVGANK
Sbjct: 61  CKQIAPYYIELSENYPSLMFLVIDVDELSDFSASWEIKATPTFFFLRDGQQVDKLVGANK 120

Query: 121 PELQKKVAAAVDSVVPSQK 139
           PEL KK+ A +DS+ PS K
Sbjct: 121 PELHKKITAILDSLPPSAK 139

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|193506795|pdb|3D22|A Chain A, Crystal Structure Of A Poplar Thioredoxin H Mutant, Pttrxh4c61s gi|189065872|emb|CAQ56198.1| mutant thioredoxin h4 [Populus trichocarpa x Populus deltoides]

 Score =  219 bits (557), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 99/139 (71%), Positives = 118/139 (84%)

Query: 1   MGTCLSKRQHDEEDGEHPVEFAGGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGP 60
           MG CL+KR HD +D E  +E AGGNV L+TTK+ WDQK+SEAS++GKIV+ANFSA WCGP
Sbjct: 1   MGLCLAKRNHDADDDEPHIELAGGNVHLITTKERWDQKLSEASRDGKIVLANFSARWCGP 60

Query: 61  CRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANK 120
            R IAP++ ELSE YPSLMFL++DVDEL +FS SW+IKATPTFFFL+DGQQVDKLVGANK
Sbjct: 61  SRQIAPYYIELSENYPSLMFLVIDVDELSDFSASWEIKATPTFFFLRDGQQVDKLVGANK 120

Query: 121 PELQKKVAAAVDSVVPSQK 139
           PEL KK+ A +DS+ PS K
Sbjct: 121 PELHKKITAILDSLPPSDK 139

Source: Populus trichocarpa x Populus deltoides

Species: Populus trichocarpa x Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255575612|ref|XP_002528706.1| Thioredoxin H-type, putative [Ricinus communis] gi|223531878|gb|EEF33695.1| Thioredoxin H-type, putative [Ricinus communis]

 Score =  217 bits (552), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 98/130 (75%), Positives = 115/130 (88%)

Query: 10  HDEEDGEHPVEFAGGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFS 69
           H + D +  VEFAG NVSL+TTK+ WDQK+SEASK+GKIV+ANFSATWCGPCRMIAPF+ 
Sbjct: 3   HHDNDSDQHVEFAGNNVSLITTKESWDQKLSEASKDGKIVLANFSATWCGPCRMIAPFYR 62

Query: 70  ELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKVAA 129
           ELSEKYPS+MFLL+DVDEL +FS+SWDIKATPTFFFL+DGQQ+DKLVGANKPELQKK+ A
Sbjct: 63  ELSEKYPSIMFLLIDVDELADFSSSWDIKATPTFFFLRDGQQLDKLVGANKPELQKKIIA 122

Query: 130 AVDSVVPSQK 139
            +D+V    K
Sbjct: 123 VLDTVTDCNK 132

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|24637231|gb|AAN63619.1|AF435818_1 thioredoxin h-like protein [Nicotiana tabacum]

 Score =  213 bits (542), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 99/134 (73%), Positives = 115/134 (85%), Gaps = 1/134 (0%)

Query: 3   TCLSKRQ-HDEEDGEHPVEFAGGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPC 61
           +C   R  ++++D  H VEFAGGNV L+TTK+ WDQK++EA+KEGKIVIANFSA+WCGPC
Sbjct: 12  SCFKTRSTNNDDDSSHNVEFAGGNVCLITTKESWDQKLAEANKEGKIVIANFSASWCGPC 71

Query: 62  RMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKP 121
           RMIAPF+ ELSEKY SLMFL VDVDEL EFS+SWDIKATPTFFFLKD QQ+DKLVGANKP
Sbjct: 72  RMIAPFYCELSEKYLSLMFLTVDVDELTEFSSSWDIKATPTFFFLKDSQQIDKLVGANKP 131

Query: 122 ELQKKVAAAVDSVV 135
           ELQKK+ A  D+ V
Sbjct: 132 ELQKKITAIADTQV 145

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356568246|ref|XP_003552324.1| PREDICTED: thioredoxin H9-like [Glycine max]

 Score =  213 bits (541), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 95/134 (70%), Positives = 115/134 (85%)

Query: 1   MGTCLSKRQHDEEDGEHPVEFAGGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGP 60
           MG+C+SK +  + D +H V+FA GNV L+TTK+ WDQ + EA ++GKIVIANFSA WCGP
Sbjct: 1   MGSCVSKNKARDNDSDHNVDFAAGNVKLITTKEAWDQYLEEARRDGKIVIANFSAAWCGP 60

Query: 61  CRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANK 120
           C+MIAP++ ELSEKY S+MFL+VDVDEL +FSTSWDIKATPTFFFLKDGQQ+DKLVGANK
Sbjct: 61  CKMIAPYYCELSEKYTSMMFLVVDVDELTDFSTSWDIKATPTFFFLKDGQQLDKLVGANK 120

Query: 121 PELQKKVAAAVDSV 134
           PELQKK+ A  DS+
Sbjct: 121 PELQKKIVAINDSL 134

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357477627|ref|XP_003609099.1| Thioredoxin H-type 9 [Medicago truncatula] gi|269315892|gb|ACZ37072.1| thioredoxin h8 [Medicago truncatula] gi|355510154|gb|AES91296.1| Thioredoxin H-type 9 [Medicago truncatula] gi|388521679|gb|AFK48901.1| unknown [Medicago truncatula]

 Score =  212 bits (540), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 96/134 (71%), Positives = 115/134 (85%)

Query: 1   MGTCLSKRQHDEEDGEHPVEFAGGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGP 60
           MG CL+K +  + D +  VEFA GNV+L+TTK+ WDQK+ EA K+GKIVIANFSA WCGP
Sbjct: 1   MGNCLAKSRDRDNDSDQHVEFAAGNVALITTKEAWDQKLEEAKKDGKIVIANFSAVWCGP 60

Query: 61  CRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANK 120
           C++IAP++ E+SEKY S+MFLLVDVDEL +FSTSWDIKATPTFFFLKDGQQ+DKLVGANK
Sbjct: 61  CKVIAPYYCEMSEKYTSMMFLLVDVDELTDFSTSWDIKATPTFFFLKDGQQLDKLVGANK 120

Query: 121 PELQKKVAAAVDSV 134
           PEL+KK+ A  DSV
Sbjct: 121 PELEKKLVAIADSV 134

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388493430|gb|AFK34781.1| unknown [Lotus japonicus]

 Score =  212 bits (539), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 97/139 (69%), Positives = 120/139 (86%), Gaps = 1/139 (0%)

Query: 1   MGTCLSKRQHDEEDGEHPVEFAGGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGP 60
           MG C++K    ++D +H VEFAG NV+++TTK+ WDQK+ EA ++GKIVIANFSATWCGP
Sbjct: 1   MGNCVAKYHAKDDDSDH-VEFAGDNVTIITTKEAWDQKLEEAKRDGKIVIANFSATWCGP 59

Query: 61  CRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANK 120
           C++IAP++ ELSEKY S+MFLLVDVDEL +FSTSWDIKATPTFFFLKDGQQ+DKLVGAN+
Sbjct: 60  CKIIAPYYCELSEKYTSMMFLLVDVDELTDFSTSWDIKATPTFFFLKDGQQLDKLVGANR 119

Query: 121 PELQKKVAAAVDSVVPSQK 139
           PEL+KKV A  DSV  S++
Sbjct: 120 PELEKKVVAIADSVPESKQ 138

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449449851|ref|XP_004142678.1| PREDICTED: thioredoxin H-type-like [Cucumis sativus] gi|449532517|ref|XP_004173227.1| PREDICTED: LOW QUALITY PROTEIN: thioredoxin H-type-like [Cucumis sativus]

 Score =  211 bits (537), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 96/138 (69%), Positives = 117/138 (84%)

Query: 1   MGTCLSKRQHDEEDGEHPVEFAGGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGP 60
           MG C SK +  ++D +H VEFA G V L+TTK+ WDQK+ EA+  GKIVIANFSATWCGP
Sbjct: 1   MGLCFSKAETKDDDSDHHVEFAAGKVHLITTKEAWDQKLEEANTSGKIVIANFSATWCGP 60

Query: 61  CRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANK 120
           C+++APF+SELSEKY SLMFL+VDVDEL +FSTSWDIKATPTFFFLK+GQQ+DKLVGANK
Sbjct: 61  CKVVAPFYSELSEKYESLMFLVVDVDELTDFSTSWDIKATPTFFFLKEGQQIDKLVGANK 120

Query: 121 PELQKKVAAAVDSVVPSQ 138
            EL+KK+ A  DS+ P++
Sbjct: 121 IELEKKITAVADSLPPNR 138

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	139
TAIR|locus:2077833	140	TH9 "thioredoxin H-type 9" [Ar	0.978	0.971	0.708	6.5e-51
TAIR|locus:2102579	154	AT3G56420 [Arabidopsis thalian	0.928	0.837	0.480	8.8e-31
TAIR|locus:2064854	154	CXXS2 "C-terminal cysteine res	0.928	0.837	0.441	2.4e-28
UNIPROTKB|Q0D840	122	TRXH "Thioredoxin H1" [Oryza s	0.820	0.934	0.464	1.4e-25
TAIR|locus:2080963	114	TRX1 "thioredoxin H-type 1" [A	0.755	0.921	0.466	2.2e-25
TAIR|locus:2013169	119	ATTRX4 [Arabidopsis thaliana (	0.748	0.873	0.457	6.1e-23
TAIR|locus:2088560	380	TDX "tetraticopeptide domain-c	0.870	0.318	0.373	2.6e-22
TAIR|locus:2825451	118	TRX5 "thioredoxin H-type 5" [A	0.762	0.898	0.392	7e-22
UNIPROTKB|O97508	105	TXN "Thioredoxin" [Equus cabal	0.748	0.990	0.424	3e-21
UNIPROTKB|Q9BDJ3	105	TXN "Thioredoxin" [Callithrix	0.719	0.952	0.441	1e-20

TAIR|locus:2077833 TH9 "thioredoxin H-type 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 529 (191.3 bits), Expect = 6.5e-51, P = 6.5e-51
 Identities = 97/137 (70%), Positives = 119/137 (86%)

Query:     1 MGTCLSKRQHDEEDGEHPVEFAGGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGP 60
             MG+C+SK + D+ D  H VEF+GGNV L+TTK+ WD K++EA ++GKIV+ANFSATWCGP
Sbjct:     1 MGSCVSKGKGDD-DSVHNVEFSGGNVHLITTKESWDDKLAEADRDGKIVVANFSATWCGP 59

Query:    61 CRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANK 120
             C+++APFF ELSEK+ SLMFLLVDVDEL +FS+SWDIKATPTFFFLK+GQQ+ KLVGANK
Sbjct:    60 CKIVAPFFIELSEKHSSLMFLLVDVDELSDFSSSWDIKATPTFFFLKNGQQIGKLVGANK 119

Query:   121 PELQKKVAAAVDSVVPS 137
             PELQKKV + +DSV  S
Sbjct:   120 PELQKKVTSIIDSVPES 136

GO:0005737 "cytoplasm" evidence=ISM

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0007154 "cell communication" evidence=IDA

GO:0009536 "plastid" evidence=IDA

TAIR|locus:2102579 AT3G56420 [Arabidopsis thaliana (taxid:3702)]

 Score = 339 (124.4 bits), Expect = 8.8e-31, P = 8.8e-31
 Identities = 62/129 (48%), Positives = 87/129 (67%)

Query:     4 CLSKRQHDEEDGEHPVEFAGGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRM 63
             C S   ++          + G V  V+  + W++K++EA+  GKI++ NFSA WC PC+ 
Sbjct:    20 CCSNNNNNSYGQTRSQHGSKGKVHPVSRIEKWEEKITEANNHGKILVVNFSAPWCVPCKK 79

Query:    64 IAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPEL 123
             I P F +L+ +YPS++F+ VDV+EL EFS  W+++ATPT  FLKDG+Q+DKLVGA   EL
Sbjct:    80 IEPVFRDLASRYPSMIFVTVDVEELAEFSNEWNVEATPTVVFLKDGRQMDKLVGAETSEL 139

Query:   124 QKKVAAAVD 132
             QKK AAA D
Sbjct:   140 QKKTAAAAD 148

GO:0005737 "cytoplasm" evidence=ISM

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

TAIR|locus:2064854 CXXS2 "C-terminal cysteine residue is changed to a serine 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 316 (116.3 bits), Expect = 2.4e-28, P = 2.4e-28
 Identities = 57/129 (44%), Positives = 85/129 (65%)

Query:     4 CLSKRQHDEEDGEHPVEFAGGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRM 63
             C ++R   +   +    F  G V  V+  + W++K++EA+  GKI++ NF A+WC P + 
Sbjct:    20 CCNRRNKTQARSQKGSYFIKGKVHPVSRMEKWEEKITEANSHGKILVVNFKASWCLPSKT 79

Query:    64 IAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPEL 123
             I P + EL+  Y S++F+ +DV+EL EFS  W++ ATPT  FLKDG+Q+DKLVG +  EL
Sbjct:    80 ILPIYQELASTYTSMIFVTIDVEELAEFSHEWNVDATPTVVFLKDGRQMDKLVGGDAAEL 139

Query:   124 QKKVAAAVD 132
             QKK AAA +
Sbjct:   140 QKKTAAAAN 148

GO:0005737 "cytoplasm" evidence=ISM

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0003756 "protein disulfide isomerase activity" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0080058 "protein deglutathionylation" evidence=IDA

UNIPROTKB|Q0D840 TRXH "Thioredoxin H1" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 290 (107.1 bits), Expect = 1.4e-25, P = 1.4e-25
 Identities = 53/114 (46%), Positives = 78/114 (68%)

Query:    24 GNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLV 83
             G V     KD +D +M++A + GK+VI +F+A+WCGPCR IAP F+E ++K+P  +FL V
Sbjct:     6 GVVIACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAVFLKV 65

Query:    84 DVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKVAAAVDSVVPS 137
             DVDEL E +  ++++A PTF F+KDG + DK+VGA K +LQ  +   V +   S
Sbjct:    66 DVDELKEVAEKYNVEAMPTFLFIKDGAEADKVVGARKDDLQNTIVKHVGATAAS 119

GO:0004857 "enzyme inhibitor activity" evidence=IDA

GO:0006979 "response to oxidative stress" evidence=IEP

GO:0009409 "response to cold" evidence=IEP

GO:0010497 "plasmodesmata-mediated intercellular transport" evidence=IDA

GO:0016671 "oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor" evidence=IDA;TAS

GO:0043086 "negative regulation of catalytic activity" evidence=IDA

TAIR|locus:2080963 TRX1 "thioredoxin H-type 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 288 (106.4 bits), Expect = 2.2e-25, P = 2.2e-25
 Identities = 49/105 (46%), Positives = 77/105 (73%)

Query:    24 GNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLV 83
             G V    T + W++++ +A++   +V+ +F+A+WCGPCR IAPFF++L++K P+++FL V
Sbjct:     6 GQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPNVLFLKV 65

Query:    84 DVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKVA 128
             D DEL   ++ W I+A PTF FLK+G+ +DK+VGA K ELQ  +A
Sbjct:    66 DTDELKSVASDWAIQAMPTFMFLKEGKILDKVVGAKKDELQSTIA 110

GO:0005737 "cytoplasm" evidence=ISM

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0008047 "enzyme activator activity" evidence=IDA

GO:0043085 "positive regulation of catalytic activity" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

GO:0005829 "cytosol" evidence=TAS

GO:0016671 "oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor" evidence=IDA

TAIR|locus:2013169 ATTRX4 [Arabidopsis thaliana (taxid:3702)]

 Score = 265 (98.3 bits), Expect = 6.1e-23, P = 6.1e-23
 Identities = 48/105 (45%), Positives = 73/105 (69%)

Query:    24 GNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKY-PSLMFLL 82
             G V    T D+W  ++ +A +  K+++ +F+A+WC PCRMIAP F++L++K+  S +F  
Sbjct:     6 GQVIGCHTNDVWTVQLDKAKESNKLIVIDFTASWCPPCRMIAPIFNDLAKKFMSSAIFFK 65

Query:    83 VDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKV 127
             VDVDEL   +  + ++A PTF F+K G+ VDKLVGANK +LQ K+
Sbjct:    66 VDVDELQSVAKEFGVEAMPTFVFIKAGEVVDKLVGANKEDLQAKI 110

GO:0005737 "cytoplasm" evidence=ISM

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0005829 "cytosol" evidence=TAS

GO:0016671 "oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor" evidence=IDA

TAIR|locus:2088560 TDX "tetraticopeptide domain-containing thioredoxin" [Arabidopsis thaliana (taxid:3702)]

 Score = 259 (96.2 bits), Expect = 2.6e-22, P = 2.6e-22
 Identities = 46/123 (37%), Positives = 83/123 (67%)

Query:     7 KRQHDEEDGEHPVEFAGGNV-SLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIA 65
             ++Q + ++ E       G V S+ +T ++ + K   A K  +++I  F+ATWCGPCR ++
Sbjct:   253 RKQQEAQEREAQAALNDGEVISIHSTSEL-EAKTKAAKKASRLLILYFTATWCGPCRYMS 311

Query:    66 PFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQK 125
             P +S L+ ++  ++FL VD+D+  + + SW+I + PTF F++DG++VDK+VGA+K  L++
Sbjct:   312 PLYSNLATQHSRVVFLKVDIDKANDVAASWNISSVPTFCFIRDGKEVDKVVGADKGSLEQ 371

Query:   126 KVA 128
             K+A
Sbjct:   372 KIA 374

GO:0005737 "cytoplasm" evidence=ISM

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0016671 "oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor" evidence=IDA

GO:0030544 "Hsp70 protein binding" evidence=IDA

GO:0006457 "protein folding" evidence=IDA

GO:0010286 "heat acclimation" evidence=IMP

GO:0051259 "protein oligomerization" evidence=IDA

TAIR|locus:2825451 TRX5 "thioredoxin H-type 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 255 (94.8 bits), Expect = 7.0e-22, P = 7.0e-22
 Identities = 42/107 (39%), Positives = 77/107 (71%)

Query:    22 AG-GNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMF 80
             AG G V    T ++W++K+ +A++  K+++ +F+A+WC PCR IAP F+E+++K+ +++F
Sbjct:     2 AGEGEVIACHTLEVWNEKVKDANESKKLIVIDFTASWCPPCRFIAPVFAEMAKKFTNVVF 61

Query:    81 LLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKV 127
               +DVDEL   +  + ++A PTF F+K+G  +D++VGA K E+ +K+
Sbjct:    62 FKIDVDELQAVAQEFKVEAMPTFVFMKEGNIIDRVVGAAKDEINEKL 108

GO:0005737 "cytoplasm" evidence=ISM

GO:0009055 "electron carrier activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0006979 "response to oxidative stress" evidence=IEP

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0010188 "response to microbial phytotoxin" evidence=IMP

GO:0050832 "defense response to fungus" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

GO:0005829 "cytosol" evidence=TAS

GO:0016671 "oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor" evidence=IDA

UNIPROTKB|O97508 TXN "Thioredoxin" [Equus caballus (taxid:9796)]

 Score = 249 (92.7 bits), Expect = 3.0e-21, P = 3.0e-21
 Identities = 45/106 (42%), Positives = 70/106 (66%)

Query:    26 VSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDV 85
             V  + +K  + + ++ A +  K+V+ +FSATWCGPC+MI PFF  LSEKY +++FL VDV
Sbjct:     2 VKQIESKSAFQEALNSAGE--KLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDV 59

Query:    86 DELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKVAAAV 131
             D+  + +   ++K  PTF F K GQ+VD+  GANK +L+  +   +
Sbjct:    60 DDCQDVAAECEVKCMPTFQFFKKGQKVDEFSGANKEKLEATIKGLI 105

GO:0009314 "response to radiation" evidence=ISS

GO:0033158 "regulation of protein import into nucleus, translocation" evidence=ISS

GO:0043388 "positive regulation of DNA binding" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=ISS

UNIPROTKB|Q9BDJ3 TXN "Thioredoxin" [Callithrix jacchus (taxid:9483)]

 Score = 244 (91.0 bits), Expect = 1.0e-20, P = 1.0e-20
 Identities = 45/102 (44%), Positives = 68/102 (66%)

Query:    26 VSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDV 85
             V  + +KD + + +  A    K+V+ +FSATWCGPC+MI PFF  LSEKY +++FL VDV
Sbjct:     2 VKQIDSKDAFQEALDAAGD--KLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDV 59

Query:    86 DELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKV 127
             D+  + ++  ++K  PTF F K GQ+V +  GANK +L+  +
Sbjct:    60 DDCQDVASECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATI 101

GO:0009314 "response to radiation" evidence=ISS

GO:0033158 "regulation of protein import into nucleus, translocation" evidence=ISS

GO:0043388 "positive regulation of DNA binding" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P85801	TRXH_POPJC	No assigned EC number	0.7122	1.0	1.0	N/A	no
Q9AS75	TRH41_ORYSJ	No assigned EC number	0.6541	0.9352	0.9923	yes	no
Q9C9Y6	TRXH9_ARATH	No assigned EC number	0.7164	0.9568	0.95	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	139
cd02947	93	cd02947, TRX_family, TRX family; composed of two g	5e-32
PTZ00051	98	PTZ00051, PTZ00051, thioredoxin; Provisional	1e-25
pfam00085	104	pfam00085, Thioredoxin, Thioredoxin	2e-25
cd02984	97	cd02984, TRX_PICOT, TRX domain, PICOT (for PKC-int	6e-21
TIGR01068	101	TIGR01068, thioredoxin, thioredoxin	8e-21
cd02966	116	cd02966, TlpA_like_family, TlpA-like family; compo	2e-15
COG0526	127	COG0526, TrxA, Thiol-disulfide isomerase and thior	3e-13
cd02985	103	cd02985, TRX_CDSP32, TRX family, chloroplastic dro	2e-11
pfam13098	105	pfam13098, Thioredoxin_2, Thioredoxin-like domain	7e-11
cd02948	102	cd02948, TRX_NDPK, TRX domain, TRX and NDP-kinase	8e-11
cd02961	101	cd02961, PDI_a_family, Protein Disulfide Isomerase	2e-10
PRK09381	109	PRK09381, trxA, thioredoxin; Provisional	3e-10
PRK10996	139	PRK10996, PRK10996, thioredoxin 2; Provisional	4e-10
COG3118	304	COG3118, COG3118, Thioredoxin domain-containing pr	4e-09
cd03011	123	cd03011, TlpA_like_ScsD_MtbDsbE, TlpA-like family,	2e-08
cd02949	97	cd02949, TRX_NTR, TRX domain, novel NADPH thioredo	6e-08
PTZ00102	477	PTZ00102, PTZ00102, disulphide isomerase; Provisio	2e-06
cd01659	69	cd01659, TRX_superfamily, Thioredoxin (TRX) superf	2e-06
cd03005	102	cd03005, PDI_a_ERp46, PDIa family, endoplasmic ret	2e-06
cd02956	96	cd02956, ybbN, ybbN protein family; ybbN is a hypo	3e-06
TIGR01126	102	TIGR01126, pdi_dom, protein disulfide-isomerase do	4e-06
pfam13905	94	pfam13905, Thioredoxin_8, Thioredoxin-like	5e-06
cd02964	132	cd02964, TryX_like_family, Tryparedoxin (TryX)-lik	1e-05
cd02962	152	cd02962, TMX2, TMX2 family; composed of proteins s	2e-05
PHA02125	75	PHA02125, PHA02125, thioredoxin-like protein	5e-05
TIGR01130	462	TIGR01130, ER_PDI_fam, protein disulfide isomerase	9e-05
cd02996	108	cd02996, PDI_a_ERp44, PDIa family, endoplasmic ret	3e-04
PRK03147	173	PRK03147, PRK03147, thiol-disulfide oxidoreductase	3e-04
cd02999	100	cd02999, PDI_a_ERp44_like, PDIa family, endoplasmi	4e-04
cd02950	142	cd02950, TxlA, TRX-like protein A (TxlA) family; T	4e-04
TIGR00385	173	TIGR00385, dsbE, periplasmic protein thiol:disulfi	5e-04
cd03009	131	cd03009, TryX_like_TryX_NRX, Tryparedoxin (TryX)-l	6e-04
cd02994	101	cd02994, PDI_a_TMX, PDIa family, TMX subfamily; co	0.001
cd03010	127	cd03010, TlpA_like_DsbE, TlpA-like family, DsbE (a	0.001
pfam13899	81	pfam13899, Thioredoxin_7, Thioredoxin-like	0.002
cd02992	114	cd02992, PDI_a_QSOX, PDIa family, Quiescin-sulfhyd	0.004
cd02995	104	cd02995, PDI_a_PDI_a'_C, PDIa family, C-terminal T	0.004
cd02957	113	cd02957, Phd_like, Phosducin (Phd)-like family; co	0.004

>gnl|CDD|239245 cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains

 Score =  108 bits (273), Expect = 5e-32
 Identities = 40/89 (44%), Positives = 61/89 (68%), Gaps = 1/89 (1%)

Query: 41  EASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKAT 100
           E  K  K V+ +F A WCGPC+ IAP   EL+E+YP + F+ VDVDE  E +  + +++ 
Sbjct: 5   ELIKSAKPVVVDFWAPWCGPCKAIAPVLEELAEEYPKVKFVKVDVDENPELAEEYGVRSI 64

Query: 101 PTFFFLKDGQQVDKLVGAN-KPELQKKVA 128
           PTF F K+G++VD++VGA+ K EL++ + 
Sbjct: 65  PTFLFFKNGKEVDRVVGADPKEELEEFLE 93

Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functional TRXs have been reported in most organisms; in eukaryotes, they are located in the cytoplasm and the mitochondria. Higher plants contain more types (at least 20 TRX genes have been detected in the genome of Arabidopsis thaliana), two of which (types f amd m) are located in the same compartment, the chloroplast. Also included in the alignment are TRX-like domains which show sequence homology to TRX but do not contain the redox active CXXC motif. Group II proteins, in addition to either a redox active TRX or a TRX-like domain, also contain additional domains, which may or may not possess homology to known proteins. Length = 93

>gnl|CDD|173347 PTZ00051, PTZ00051, thioredoxin; Provisional

 Score = 93.0 bits (231), Expect = 1e-25
 Identities = 41/99 (41%), Positives = 63/99 (63%), Gaps = 4/99 (4%)

Query: 26  VSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDV 85
           V +VT++  ++  +S+      +VI +F A WCGPC+ IAPF+ E S++Y  ++F+ VDV
Sbjct: 2   VHIVTSQAEFESTLSQNE----LVIVDFYAEWCGPCKRIAPFYEECSKEYTKMVFVKVDV 57

Query: 86  DELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQ 124
           DEL E +   +I + PTF   K+G  VD L+GAN   L+
Sbjct: 58  DELSEVAEKENITSMPTFKVFKNGSVVDTLLGANDEALK 96

Length = 98

>gnl|CDD|215704 pfam00085, Thioredoxin, Thioredoxin

 Score = 92.3 bits (230), Expect = 2e-25
 Identities = 34/106 (32%), Positives = 58/106 (54%), Gaps = 5/106 (4%)

Query: 26  VSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVD 84
           V  V T + +D    E +K  K V+ +F A WCGPC+ +AP + +L+++Y   + F  VD
Sbjct: 1   VVKVLTDENFD---EEVAKSDKPVLVDFYAPWCGPCKALAPEYEKLAQEYKDDVKFAKVD 57

Query: 85  VDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPE-LQKKVAA 129
            DE  + ++ + ++  PT  F K+G++V   VGA   + L   +  
Sbjct: 58  ADENPDLASEYGVRGFPTIKFFKNGKKVSDYVGARTKDDLVAFIKK 103

Thioredoxins are small enzymes that participate in redox reactions, via the reversible oxidation of an active centre disulfide bond. Some members with only the active site are not separated from the noise. Length = 104

>gnl|CDD|239282 cd02984, TRX_PICOT, TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes

 Score = 80.8 bits (200), Expect = 6e-21
 Identities = 35/87 (40%), Positives = 55/87 (63%), Gaps = 1/87 (1%)

Query: 43  SKEGKIVIANFSATWCGPCRMIAPFFSELS-EKYPSLMFLLVDVDELVEFSTSWDIKATP 101
           S   K+++ +F A W  PC+ +   F EL+ E +PS++FL ++ +EL E S  ++I A P
Sbjct: 11  SDASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPEISEKFEITAVP 70

Query: 102 TFFFLKDGQQVDKLVGANKPELQKKVA 128
           TF F ++G  VD++ GA+  EL KKV 
Sbjct: 71  TFVFFRNGTIVDRVSGADPKELAKKVE 97

PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Length = 97

>gnl|CDD|200072 TIGR01068, thioredoxin, thioredoxin

 Score = 80.4 bits (199), Expect = 8e-21
 Identities = 32/89 (35%), Positives = 51/89 (57%), Gaps = 2/89 (2%)

Query: 36  DQKMSEASKEG-KIVIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVDELVEFST 93
           D    E      K V+ +F A WCGPC+MIAP   EL+++Y   + F+ ++VDE  + + 
Sbjct: 3   DANFDETIASSDKPVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPDIAA 62

Query: 94  SWDIKATPTFFFLKDGQQVDKLVGANKPE 122
            + I++ PT    K+G++VD+ VGA    
Sbjct: 63  KYGIRSIPTLLLFKNGKEVDRSVGALPKA 91

Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by This model. Any protein that hits once with a score greater than the second (per domain) trusted cutoff may be taken as thioredoxin [Energy metabolism, Electron transport]. Length = 101

>gnl|CDD|239264 cd02966, TlpA_like_family, TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins

 Score = 66.9 bits (164), Expect = 2e-15
 Identities = 27/115 (23%), Positives = 52/115 (45%), Gaps = 26/115 (22%)

Query: 29  VTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKY--PSLMFLLVDVD 86
            +  D+  + +S +  +GK+V+ NF A+WC PCR   P    L+++Y    +  + V+VD
Sbjct: 2   FSLPDLDGKPVSLSDLKGKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVD 61

Query: 87  ELV-----------------------EFSTSWDIKATPTFFFL-KDGQQVDKLVG 117
           +                         E + ++ ++  PT F + +DG+   + VG
Sbjct: 62  DDDPAAVKAFLKKYGITFPVLLDPDGELAKAYGVRGLPTTFLIDRDGRIRARHVG 116

TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases. Length = 116

>gnl|CDD|223600 COG0526, TrxA, Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

 Score = 61.8 bits (149), Expect = 3e-13
 Identities = 31/98 (31%), Positives = 54/98 (55%), Gaps = 4/98 (4%)

Query: 26  VSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP-SLMFLLVD 84
            +  + +++    +S +  +GK V+ +F A WC PCR  AP   EL+E+Y   +  + V+
Sbjct: 12  ATAASFEELDGAPLSLSELKGKPVLVDFWAPWCPPCRAEAPLLEELAEEYGGDVEVVAVN 71

Query: 85  V-DELVEFST--SWDIKATPTFFFLKDGQQVDKLVGAN 119
           V DE  + +      +++ PT    KDG++VD+LVG  
Sbjct: 72  VDDENPDLAAEFGVAVRSIPTLLLFKDGKEVDRLVGGK 109

Length = 127

>gnl|CDD|239283 cd02985, TRX_CDSP32, TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif

 Score = 56.7 bits (137), Expect = 2e-11
 Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 5/92 (5%)

Query: 37  QKMSEASK--EGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDE---LVEF 91
           +++ EA K  +G++V+  F+    GP   I P   +LS     ++FLLV+ DE    +E 
Sbjct: 4   EELDEALKKAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTCNDVVFLLVNGDENDSTMEL 63

Query: 92  STSWDIKATPTFFFLKDGQQVDKLVGANKPEL 123
                I   P F F KDG+++ +  G    EL
Sbjct: 64  CRREKIIEVPHFLFYKDGEKIHEEEGIGPDEL 95

CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form. Length = 103

>gnl|CDD|221921 pfam13098, Thioredoxin_2, Thioredoxin-like domain

 Score = 55.1 bits (133), Expect = 7e-11
 Identities = 25/99 (25%), Positives = 43/99 (43%), Gaps = 18/99 (18%)

Query: 42  ASKEGKIVIANFSATWCGPCRMIAPFFSELSE--KYPSLMFLL--VDVDE---------- 87
           A   GK V+  F+   C  C+ +     +  +  +Y    F++  V+VD+          
Sbjct: 1   AKGNGKPVLVVFTDPDCPYCKKLHKELLKDPDVQEYLKDNFVVIYVNVDDSKEVTDFDGE 60

Query: 88  ---LVEFSTSWDIKATPTFFFL-KDGQQVDKLVGANKPE 122
                E +  + ++ TPT  FL  DG++V +L G   PE
Sbjct: 61  TLSEKELARKYGVRGTPTIVFLDGDGKEVARLPGYLPPE 99

Length = 105

>gnl|CDD|239246 cd02948, TRX_NDPK, TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein

 Score = 54.6 bits (132), Expect = 8e-11
 Identities = 27/101 (26%), Positives = 48/101 (47%), Gaps = 7/101 (6%)

Query: 29  VTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS--LMFLLVDVD 86
           +  ++ W++ +S    +G  V+  +   WCGPC+ +   F ++  +     L F   + D
Sbjct: 4   INNQEEWEELLS---NKGLTVVDVYQE-WCGPCKAVVSLFKKIKNELGDDLLHFATAEAD 59

Query: 87  ELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKV 127
            +      +  K  PTF F K+G+ V  + GAN P L K +
Sbjct: 60  TIDTLK-RYRGKCEPTFLFYKNGELVAVIRGANAPLLNKTI 99

Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which is also associated with microtubular structures. The other members of this group are hypothetical insect proteins containing a TRX domain and outer arm dynein light chains (14 and 16kDa) of Chlamydomonas reinhardtii. Using standard assays, the fusion proteins have shown no TRX enzymatic activity. Length = 102

>gnl|CDD|239259 cd02961, PDI_a_family, Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

 Score = 53.8 bits (130), Expect = 2e-10
 Identities = 17/69 (24%), Positives = 34/69 (49%), Gaps = 3/69 (4%)

Query: 44  KEGKIVIANFSATWCGPCRMIAPFFSELSEKY---PSLMFLLVDVDELVEFSTSWDIKAT 100
           K+ K V+  F A WCG C+ +AP + +L+++      ++   VD     +  + + ++  
Sbjct: 13  KDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGVRGY 72

Query: 101 PTFFFLKDG 109
           PT     +G
Sbjct: 73  PTIKLFPNG 81

Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies are necessary for the isomerase function. The different types of PDIs may show different substrate specificities and tissue-specific expression, or may be induced by stress. PDIs are in their reduced form at steady state and are oxidized to the active form by Ero1, which is localized in the ER through ERp44. Some members of this family also contain a DnaJ domain in addition to the redox active a domains; examples are ERdj5 and Pfj2. Also included in the family is the redox inactive N-terminal TRX-like domain of ERp29. Length = 101

>gnl|CDD|181812 PRK09381, trxA, thioredoxin; Provisional

 Score = 53.5 bits (128), Expect = 3e-10
 Identities = 27/89 (30%), Positives = 47/89 (52%), Gaps = 4/89 (4%)

Query: 31  TKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP-SLMFLLVDVDELV 89
           T D +D   ++  K    ++ +F A WCGPC+MIAP   E++++Y   L    +++D+  
Sbjct: 9   TDDSFD---TDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNP 65

Query: 90  EFSTSWDIKATPTFFFLKDGQQVDKLVGA 118
             +  + I+  PT    K+G+     VGA
Sbjct: 66  GTAPKYGIRGIPTLLLFKNGEVAATKVGA 94

Length = 109

>gnl|CDD|182889 PRK10996, PRK10996, thioredoxin 2; Provisional

 Score = 53.9 bits (130), Expect = 4e-10
 Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 1/71 (1%)

Query: 49  VIANFSATWCGPCRMIAPFFSELS-EKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLK 107
           V+ +F A WCGPCR  AP F +++ E+   + F+ V+ +   E S  + I++ PT    K
Sbjct: 55  VVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAERELSARFRIRSIPTIMIFK 114

Query: 108 DGQQVDKLVGA 118
           +GQ VD L GA
Sbjct: 115 NGQVVDMLNGA 125

Length = 139

>gnl|CDD|225660 COG3118, COG3118, Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

 Score = 52.7 bits (127), Expect = 4e-09
 Identities = 39/125 (31%), Positives = 66/125 (52%), Gaps = 10/125 (8%)

Query: 15  GEHPVEFAGGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEK 74
           GE  +   G  +  VT  +  +Q++ ++S+E   V+ +F A WCGPC+ + P   +L+ +
Sbjct: 16  GEDAMAAPG--IKDVTEANF-EQEVIQSSRE-VPVLVDFWAPWCGPCKQLTPTLEKLAAE 71

Query: 75  YPSLMFLL--VDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKVAAAVD 132
           Y    F L  V+ D     +  + +++ PT +  KDGQ VD   GA  PE Q  +   +D
Sbjct: 72  Y-KGKFKLAKVNCDAEPMVAAQFGVQSIPTVYAFKDGQPVDGFQGAQ-PESQ--LRQFLD 127

Query: 133 SVVPS 137
            V+P+
Sbjct: 128 KVLPA 132

Length = 304

>gnl|CDD|239309 cd03011, TlpA_like_ScsD_MtbDsbE, TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif

 Score = 49.2 bits (118), Expect = 2e-08
 Identities = 26/111 (23%), Positives = 38/111 (34%), Gaps = 26/111 (23%)

Query: 30  TTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLV-----D 84
           T   +  ++    S  GK V+  F ATWC  CR  +P  ++L+  YP    + V     D
Sbjct: 4   TATTLDGEQFDLESLSGKPVLVYFWATWCPVCRFTSPTVNQLAADYP---VVSVALRSGD 60

Query: 85  VDELVEF------------------STSWDIKATPTFFFLKDGQQVDKLVG 117
              +  F                  S  W +  TP    +  G  V    G
Sbjct: 61  DGAVARFMQKKGYGFPVINDPDGVISARWGVSVTPAIVIVDPGGIVFVTTG 111

The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c. Length = 123

>gnl|CDD|239247 cd02949, TRX_NTR, TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains

 Score = 47.1 bits (112), Expect = 6e-08
 Identities = 20/72 (27%), Positives = 43/72 (59%), Gaps = 1/72 (1%)

Query: 47  KIVIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVDELVEFSTSWDIKATPTFFF 105
           ++++  +++  CGPCR + P  +++ +++   + F+ +D+DE  E + +  I  TPT  F
Sbjct: 14  RLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQEIAEAAGIMGTPTVQF 73

Query: 106 LKDGQQVDKLVG 117
            KD + V ++ G
Sbjct: 74  FKDKELVKEISG 85

The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress. Length = 97

>gnl|CDD|240266 PTZ00102, PTZ00102, disulphide isomerase; Provisional

 Score = 45.5 bits (108), Expect = 2e-06
 Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 4/74 (5%)

Query: 44  KEGKIVIANFSATWCGPCRMIAPFFS----ELSEKYPSLMFLLVDVDELVEFSTSWDIKA 99
            E +IV+  F A WCG C+ +AP +      L EK   ++   VD  E +E +  + ++ 
Sbjct: 47  TENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEMELAQEFGVRG 106

Query: 100 TPTFFFLKDGQQVD 113
            PT  F   G  V+
Sbjct: 107 YPTIKFFNKGNPVN 120

Length = 477

>gnl|CDD|238829 cd01659, TRX_superfamily, Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold

 Score = 42.7 bits (100), Expect = 2e-06
 Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 3/66 (4%)

Query: 50  IANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDE---LVEFSTSWDIKATPTFFFL 106
           +  F A WC  C+ + P  +EL+     + F  VDVDE   L +    + +   PT    
Sbjct: 1   LVLFYAPWCPFCQALRPVLAELALLNKGVKFEAVDVDEDPALEKELKRYGVGGVPTLVVF 60

Query: 107 KDGQQV 112
             G  V
Sbjct: 61  GPGIGV 66

Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others. Length = 69

>gnl|CDD|239303 cd03005, PDI_a_ERp46, PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains

 Score = 43.0 bits (102), Expect = 2e-06
 Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 4/70 (5%)

Query: 53  FSATWCGPCRMIAPFFSELSEKY----PSLMFLLVDVDELVEFSTSWDIKATPTFFFLKD 108
           F A WCG C+ +AP + +L++K+    PS+    VD  +  E  + + ++  PT    KD
Sbjct: 23  FFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQVRGYPTLLLFKD 82

Query: 109 GQQVDKLVGA 118
           G++VDK  G 
Sbjct: 83  GEKVDKYKGT 92

Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia. Length = 102

>gnl|CDD|239254 cd02956, ybbN, ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain

 Score = 42.6 bits (101), Expect = 3e-06
 Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 2/77 (2%)

Query: 49  VIANFSATWCGPCRMIAPFFSELSEKYP-SLMFLLVDVDELVEFSTSWDIKATPTFFFLK 107
           V+ +F A    P + + P    L+E+Y    +   V+ D   + +  + ++A PT +   
Sbjct: 15  VVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQPQIAQQFGVQALPTVYLFA 74

Query: 108 DGQQVDKLVGANKPELQ 124
            GQ VD   GA +PE Q
Sbjct: 75  AGQPVDGFQGA-QPEEQ 90

Its gene has been sequenced from several gammaproteobacteria and actinobacteria. Length = 96

>gnl|CDD|200074 TIGR01126, pdi_dom, protein disulfide-isomerase domain

 Score = 42.7 bits (101), Expect = 4e-06
 Identities = 19/76 (25%), Positives = 36/76 (47%), Gaps = 3/76 (3%)

Query: 39  MSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKY---PSLMFLLVDVDELVEFSTSW 95
             E     K V+  F A WCG C+ +AP + +L+++    P ++   VD     + ++ +
Sbjct: 6   FDEIVLSNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKKDPDIVLAKVDATAEKDLASRF 65

Query: 96  DIKATPTFFFLKDGQQ 111
            +   PT  F   G++
Sbjct: 66  GVSGFPTIKFFPKGKK 81

This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK [Protein fate, Protein folding and stabilization]. Length = 102

>gnl|CDD|222448 pfam13905, Thioredoxin_8, Thioredoxin-like

 Score = 41.9 bits (99), Expect = 5e-06
 Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 2/44 (4%)

Query: 46 GKIVIANFSATWCGPCRMIAPFFSELSEKY--PSLMFLLVDVDE 87
          GK+V+  F A+WC PCR   P   EL EK   P +  + V +D 
Sbjct: 1  GKVVLLYFWASWCPPCRAFTPELKELYEKLKKPKVEIVYVSLDR 44

Thioredoxins are small enzymes that participate in redox reactions, via the reversible oxidation of an active centre disulfide bond. Length = 94

>gnl|CDD|239262 cd02964, TryX_like_family, Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX

 Score = 41.8 bits (99), Expect = 1e-05
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 4/56 (7%)

Query: 36 DQKMSEASKEGKIVIANFSATWCGPCRMIAP----FFSELSEKYPSLMFLLVDVDE 87
          +  +  ++ EGK V   FSA+WC PCR   P    F+ +L E+  +   + V  D 
Sbjct: 7  EGVVPVSALEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDR 62

Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX. Length = 132

>gnl|CDD|239260 cd02962, TMX2, TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library

 Score = 41.6 bits (98), Expect = 2e-05
 Identities = 27/95 (28%), Positives = 33/95 (34%), Gaps = 15/95 (15%)

Query: 47  KIVIANFSATWCGPCRMIAPFFSELSEKY--PSLMFLLVD------VDELVEFSTSWDIK 98
              +  F  TW   C   AP F+ELS KY   +L F  +D      V E    STS   K
Sbjct: 48  VTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPNVAEKFRVSTSPLSK 107

Query: 99  ATPTFFFLKDG-------QQVDKLVGANKPELQKK 126
             PT    + G          D    A      K+
Sbjct: 108 QLPTIILFQGGKEVARRPYYNDSKGRAVPFTFSKE 142

It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail. Length = 152

>gnl|CDD|133998 PHA02125, PHA02125, thioredoxin-like protein

 Score = 38.8 bits (90), Expect = 5e-05
 Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 10/77 (12%)

Query: 53  FSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQV 112
           F A WC  C+M+ P  + +   Y     + VD DE VE +    I++ PT   L +   +
Sbjct: 5   FGAEWCANCKMVKPMLANVEYTY-----VDVDTDEGVELTAKHHIRSLPT---LVNTSTL 56

Query: 113 DKLVGA--NKPELQKKV 127
           D+  G   N  EL++K+
Sbjct: 57  DRFTGVPRNVAELKEKL 73

Length = 75

>gnl|CDD|233282 TIGR01130, ER_PDI_fam, protein disulfide isomerase, eukaryotic

 Score = 40.4 bits (95), Expect = 9e-05
 Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 8/86 (9%)

Query: 28  LVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFS----ELSEKYPSLMFLLV 83
           LV TKD +D    +  K  + V+  F A WCG C+ +AP +     EL +K P +    V
Sbjct: 4   LVLTKDNFD----DFIKSHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKV 59

Query: 84  DVDELVEFSTSWDIKATPTFFFLKDG 109
           D  E  + +  + +   PT    ++G
Sbjct: 60  DATEEKDLAQKYGVSGYPTLKIFRNG 85

This model represents eukaryotic protein disulfide isomerases retained in the endoplasmic reticulum (ER) and closely related forms. Some members have been assigned alternative or additional functions such as prolyl 4-hydroxylase and dolichyl-diphosphooligosaccharide-protein glycotransferase. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs). Length = 462

>gnl|CDD|239294 cd02996, PDI_a_ERp44, PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention

 Score = 37.4 bits (87), Expect = 3e-04
 Identities = 19/74 (25%), Positives = 37/74 (50%), Gaps = 7/74 (9%)

Query: 48  IVIANFSATWCGPCRMIAPFFSELS----EKYP---SLMFLLVDVDELVEFSTSWDIKAT 100
           +V+ NF A WC   +M+ P F E +    E++P    +++  VD D+  + +  + I   
Sbjct: 20  LVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRINKY 79

Query: 101 PTFFFLKDGQQVDK 114
           PT    ++G  + +
Sbjct: 80  PTLKLFRNGMMMKR 93

It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Length = 108

>gnl|CDD|179545 PRK03147, PRK03147, thiol-disulfide oxidoreductase; Provisional

 Score = 38.4 bits (90), Expect = 3e-04
 Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 2/45 (4%)

Query: 45  EGKIVIANFSATWCGPCRMIAPFFSELSEKYPS--LMFLLVDVDE 87
           +GK V  NF  TWC PC    P+ +EL  KY    +  + V+VDE
Sbjct: 60  KGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDE 104

Length = 173

>gnl|CDD|239297 cd02999, PDI_a_ERp44_like, PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44

 Score = 37.0 bits (86), Expect = 4e-04
 Identities = 13/66 (19%), Positives = 23/66 (34%), Gaps = 1/66 (1%)

Query: 42  ASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEF-STSWDIKAT 100
           A          F A+WC       P F+ LS  +P +  L ++   +     + + +   
Sbjct: 14  AFNREDYTAVLFYASWCPFSASFRPHFNALSSMFPQIRHLAIEESSIKPSLLSRYGVVGF 73

Query: 101 PTFFFL 106
           PT    
Sbjct: 74  PTILLF 79

CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER. Length = 100

>gnl|CDD|239248 cd02950, TxlA, TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus

 Score = 37.7 bits (88), Expect = 4e-04
 Identities = 28/107 (26%), Positives = 50/107 (46%), Gaps = 14/107 (13%)

Query: 41  EASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP-SLMFLLVDVD------ELVEFST 93
            A   GK  +  F A WC  C+ +AP  ++L +KY   + F++++VD      E+  +  
Sbjct: 15  VALSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRY-- 72

Query: 94  SWDIKATPTFFFL-KDGQQVDKLVGA-NKPELQKKVAAAVD-SVVPS 137
              +   P F FL ++G +  + +G   K  L + + A V    +P 
Sbjct: 73  --RVDGIPHFVFLDREGNEEGQSIGLQPKQVLAQNLDALVAGEPLPY 117

It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport. Length = 142

>gnl|CDD|129481 TIGR00385, dsbE, periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily

 Score = 37.8 bits (88), Expect = 5e-04
 Identities = 13/32 (40%), Positives = 20/32 (62%)

Query: 41 EASKEGKIVIANFSATWCGPCRMIAPFFSELS 72
          +   +GK V+ N  A+WC PCR   P+ +EL+
Sbjct: 58 DVLTQGKPVLLNVWASWCPPCRAEHPYLNELA 89

Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins [Protein fate, Protein folding and stabilization]. Length = 173

>gnl|CDD|239307 cd03009, TryX_like_TryX_NRX, Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif

 Score = 36.9 bits (86), Expect = 6e-04
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 4/55 (7%)

Query: 37 QKMSEASKEGKIVIANFSATWCGPCRMIAP----FFSELSEKYPSLMFLLVDVDE 87
           K+  +S EGK V   FSA+WC PCR   P    F+ +L E   +   + +  D 
Sbjct: 9  GKVPVSSLEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDR 63

TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the vertebrate NRX by about 100-200 amino acids, is a nuclear protein containing a redox inactive TRX-like domain between two redox active TRX domains. Both vertebrate and plant NRXs show thiol oxidoreductase activity in vitro. Their localization in the nucleus suggests a role in the redox regulation of nuclear proteins such as transcription factors. Length = 131

>gnl|CDD|239292 cd02994, PDI_a_TMX, PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX

 Score = 36.2 bits (84), Expect = 0.001
 Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 9/88 (10%)

Query: 24  GNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLV 83
            NV  +T  + W   +     EG+ +I  F A WC  C+ + P + E ++    L   + 
Sbjct: 1   SNVVELTDSN-WTLVL-----EGEWMI-EFYAPWCPACQQLQPEWEEFADWSDDLGINVA 53

Query: 84  DVDELVE--FSTSWDIKATPTFFFLKDG 109
            VD   E   S  + + A PT +  KDG
Sbjct: 54  KVDVTQEPGLSGRFFVTALPTIYHAKDG 81

TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC. Length = 101

>gnl|CDD|239308 cd03010, TlpA_like_DsbE, TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif

 Score = 36.4 bits (85), Expect = 0.001
 Identities = 24/102 (23%), Positives = 32/102 (31%), Gaps = 23/102 (22%)

Query: 40  SEASKEGKIVIANFSATWCGPCRMIAPFFSELSE--------------KYPSLMFL---- 81
           + A  +GK  + N  A+WC PCR   P    L+                  +L +L    
Sbjct: 19  TSADLKGKPYLLNVWASWCAPCREEHPVLMALARQGRVPIYGINYKDNPENALAWLARHG 78

Query: 82  ----LVDVDELVEFSTSWDIKATP-TFFFLKDGQQVDKLVGA 118
                V  D          +   P TF    DG    K VG 
Sbjct: 79  NPYAAVGFDPDGRVGIDLGVYGVPETFLIDGDGIIRYKHVGP 120

Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c. Length = 127

>gnl|CDD|222442 pfam13899, Thioredoxin_7, Thioredoxin-like

 Score = 34.6 bits (80), Expect = 0.002
 Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 6/76 (7%)

Query: 35  WDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLM---FLLVDVD-ELVE 90
            D+ +++A +EGK ++ +F A WC  C+ +   F  LS+     +   F+L+ VD    +
Sbjct: 6   LDEALAKAREEGKPLLVDFGADWCPTCQALDRDF--LSDPRVKALAEKFVLLRVDVTTRD 63

Query: 91  FSTSWDIKATPTFFFL 106
            +   D +  P   FL
Sbjct: 64  PNLLLDGQGVPHVVFL 79

Thioredoxins are small enzymes that participate in redox reactions, via the reversible oxidation of an active centre disulfide bond. Length = 81

>gnl|CDD|239290 cd02992, PDI_a_QSOX, PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein

 Score = 34.6 bits (80), Expect = 0.004
 Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 6/61 (9%)

Query: 53  FSATWCGPCRMIAPFFSELSEK----YPSLMFLLVDV--DELVEFSTSWDIKATPTFFFL 106
           F A+WCG CR  AP + +L+       P +    VD   +E V     + +   PT  + 
Sbjct: 26  FYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTGYPTLRYF 85

Query: 107 K 107
            
Sbjct: 86  P 86

QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate -> dithiol of the QSOX TRX domain -> dithiols of the QSOX ERV1p domain -> FAD -> oxygen. Length = 114

>gnl|CDD|239293 cd02995, PDI_a_PDI_a'_C, PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1

 Score = 34.1 bits (79), Expect = 0.004
 Identities = 14/33 (42%), Positives = 19/33 (57%)

Query: 45 EGKIVIANFSATWCGPCRMIAPFFSELSEKYPS 77
            K V+  F A WCG C+ +AP + EL+EK   
Sbjct: 17 SDKDVLVEFYAPWCGHCKALAPIYEELAEKLKG 49

PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins, while PDI shows a wider substrate specificity. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. EFP1 is a binding partner protein of thyroid oxidase, which is responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. Length = 104

>gnl|CDD|239255 cd02957, Phd_like, Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions

 Score = 34.5 bits (80), Expect = 0.004
 Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 2/77 (2%)

Query: 41  EASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKAT 100
           +ASK  ++V+ +F       C+++     EL+ KYP   F+ ++  E        DIK  
Sbjct: 20  KASKGTRVVV-HFYEPGFPRCKILDSHLEELAAKYPETKFVKINA-EKAFLVNYLDIKVL 77

Query: 101 PTFFFLKDGQQVDKLVG 117
           PT    K+G+ +D +VG
Sbjct: 78  PTLLVYKNGELIDNIVG 94

Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain. Also included in this family is a PhLP characterized as a viral inhibitor of apoptosis (IAP)-associated factor, named VIAF, that functions in caspase activation during apoptosis. Length = 113

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	139
KOG0910	150	consensus Thioredoxin-like protein [Posttranslatio	99.94
KOG0907	106	consensus Thioredoxin [Posttranslational modificat	99.93
cd02985	103	TRX_CDSP32 TRX family, chloroplastic drought-induc	99.92
cd02954	114	DIM1 Dim1 family; Dim1 is also referred to as U5 s	99.92
cd02948	102	TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fus	99.91
PHA02278	103	thioredoxin-like protein	99.91
PF00085	103	Thioredoxin: Thioredoxin; InterPro: IPR013766 Thio	99.91
PLN00410	142	U5 snRNP protein, DIM1 family; Provisional	99.9
cd02989	113	Phd_like_TxnDC9 Phosducin (Phd)-like family, Thior	99.9
cd03006	113	PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamil	99.9
cd02956	96	ybbN ybbN protein family; ybbN is a hypothetical p	99.9
cd03065	120	PDI_b_Calsequestrin_N PDIb family, Calsequestrin s	99.9
cd02999	100	PDI_a_ERp44_like PDIa family, endoplasmic reticulu	99.9
cd02963	111	TRX_DnaJ TRX domain, DnaJ domain containing protei	99.9
PRK09381	109	trxA thioredoxin; Provisional	99.89
PRK10996	139	thioredoxin 2; Provisional	99.89
PTZ00051	98	thioredoxin; Provisional	99.89
cd03003	101	PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfam	99.89
cd03004	104	PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfam	99.89
cd02957	113	Phd_like Phosducin (Phd)-like family; composed of	99.89
COG3118	304	Thioredoxin domain-containing protein [Posttransla	99.89
cd02984	97	TRX_PICOT TRX domain, PICOT (for PKC-interacting c	99.89
cd02986	114	DLP Dim1 family, Dim1-like protein (DLP) subfamily	99.88
cd02950	142	TxlA TRX-like protein A (TxlA) family; TxlA was or	99.87
cd02965	111	HyaE HyaE family; HyaE is also called HupG and Hox	99.87
cd02987	175	Phd_like_Phd Phosducin (Phd)-like family, Phd subf	99.87
cd02996	108	PDI_a_ERp44 PDIa family, endoplasmic reticulum pro	99.87
PTZ00443	224	Thioredoxin domain-containing protein; Provisional	99.87
KOG0908	288	consensus Thioredoxin-like protein [Posttranslatio	99.87
TIGR01068	101	thioredoxin thioredoxin. Several proteins, such as	99.86
cd02994	101	PDI_a_TMX PDIa family, TMX subfamily; composed of	99.86
cd03005	102	PDI_a_ERp46 PDIa family, endoplasmic reticulum pro	99.86
cd02949	97	TRX_NTR TRX domain, novel NADPH thioredoxin reduct	99.86
cd02975	113	PfPDO_like_N Pyrococcus furiosus protein disulfide	99.85
cd02962	152	TMX2 TMX2 family; composed of proteins similar to	99.85
cd03002	109	PDI_a_MPD1_like PDI family, MPD1-like subfamily; c	99.85
TIGR01126	102	pdi_dom protein disulfide-isomerase domain. This m	99.84
cd02953	104	DsbDgamma DsbD gamma family; DsbD gamma is the C-t	99.84
cd02997	104	PDI_a_PDIR PDIa family, PDIR subfamily; composed o	99.84
cd02951	125	SoxW SoxW family; SoxW is a bacterial periplasmic	99.83
cd03001	103	PDI_a_P5 PDIa family, P5 subfamily; composed of eu	99.83
TIGR01295	122	PedC_BrcD bacteriocin transport accessory protein,	99.83
cd03000	104	PDI_a_TMX3 PDIa family, TMX3 subfamily; composed o	99.83
cd02988	192	Phd_like_VIAF Phosducin (Phd)-like family, Viral i	99.82
cd02947	93	TRX_family TRX family; composed of two groups: Gro	99.81
PTZ00062	204	glutaredoxin; Provisional	99.81
cd02995	104	PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain	99.8
cd02961	101	PDI_a_family Protein Disulfide Isomerase (PDIa) fa	99.8
cd02993	109	PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfat	99.8
cd02998	105	PDI_a_ERp38 PDIa family, endoplasmic reticulum pro	99.79
PRK14018	521	trifunctional thioredoxin/methionine sulfoxide red	99.76
PRK15412	185	thiol:disulfide interchange protein DsbE; Provisio	99.75
cd02959	117	ERp19 Endoplasmic reticulum protein 19 (ERp19) fam	99.74
TIGR00385	173	dsbE periplasmic protein thiol:disulfide oxidoredu	99.74
cd02952	119	TRP14_like Human TRX-related protein 14 (TRP14)-li	99.74
TIGR00424	463	APS_reduc 5'-adenylylsulfate reductase, thioredoxi	99.74
PRK00293	571	dipZ thiol:disulfide interchange protein precursor	99.74
TIGR00411	82	redox_disulf_1 small redox-active disulfide protei	99.74
PLN02309	457	5'-adenylylsulfate reductase	99.74
KOG0190	493	consensus Protein disulfide isomerase (prolyl 4-hy	99.73
cd02992	114	PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidas	99.73
PTZ00102	477	disulphide isomerase; Provisional	99.73
cd03010	127	TlpA_like_DsbE TlpA-like family, DsbE (also known	99.73
TIGR01130	462	ER_PDI_fam protein disulfide isomerases, eukaryoti	99.73
PTZ00102	477	disulphide isomerase; Provisional	99.73
TIGR02187	215	GlrX_arch Glutaredoxin-like domain protein. This f	99.72
TIGR02738	153	TrbB type-F conjugative transfer system pilin asse	99.71
cd02982	103	PDI_b'_family Protein Disulfide Isomerase (PDIb')	99.7
PF13098	112	Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_	99.7
TIGR02740	271	TraF-like TraF-like protein. This protein is relat	99.69
PRK03147	173	thiol-disulfide oxidoreductase; Provisional	99.68
cd03007	116	PDI_a_ERp29_N PDIa family, endoplasmic reticulum p	99.67
cd03008	146	TryX_like_RdCVF Tryparedoxin (TryX)-like family, R	99.67
PHA02125	75	thioredoxin-like protein	99.66
cd02955	124	SSP411 TRX domain, SSP411 protein family; members	99.65
TIGR02187	215	GlrX_arch Glutaredoxin-like domain protein. This f	99.65
PF13905	95	Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_	99.64
cd02964	132	TryX_like_family Tryparedoxin (TryX)-like family;	99.64
PTZ00056	199	glutathione peroxidase; Provisional	99.64
cd03009	131	TryX_like_TryX_NRX Tryparedoxin (TryX)-like family	99.63
cd02973	67	TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-	99.63
PF08534	146	Redoxin: Redoxin; InterPro: IPR013740 This redoxin	99.63
PLN02399	236	phospholipid hydroperoxide glutathione peroxidase	99.62
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.62
cd02958	114	UAS UAS family; UAS is a domain of unknown functio	99.61
cd03026	89	AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxid	99.6
TIGR02661	189	MauD methylamine dehydrogenase accessory protein M	99.6
cd03011	123	TlpA_like_ScsD_MtbDsbE TlpA-like family, suppresso	99.6
cd02966	116	TlpA_like_family TlpA-like family; composed of Tlp	99.6
KOG0190	493	consensus Protein disulfide isomerase (prolyl 4-hy	99.59
cd03012	126	TlpA_like_DipZ_like TlpA-like family, DipZ-like su	99.59
TIGR00412	76	redox_disulf_2 small redox-active disulfide protei	99.59
PRK13728	181	conjugal transfer protein TrbB; Provisional	99.59
TIGR01130	462	ER_PDI_fam protein disulfide isomerases, eukaryoti	99.58
PRK11509	132	hydrogenase-1 operon protein HyaE; Provisional	99.55
PLN02412	167	probable glutathione peroxidase	99.54
cd02960	130	AGR Anterior Gradient (AGR) family; members of thi	99.53
cd02967	114	mauD Methylamine utilization (mau) D family; mauD	99.53
cd02969	171	PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypot	99.53
TIGR02540	153	gpx7 putative glutathione peroxidase Gpx7. This mo	99.51
TIGR01626	184	ytfJ_HI0045 conserved hypothetical protein YtfJ-fa	99.5
KOG4277	468	consensus Uncharacterized conserved protein, conta	99.5
KOG0912	375	consensus Thiol-disulfide isomerase and thioredoxi	99.49
cd00340	152	GSH_Peroxidase Glutathione (GSH) peroxidase family	99.47
cd03014	143	PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical	99.47
PRK00522	167	tpx lipid hydroperoxide peroxidase; Provisional	99.47
PF00578	124	AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Per	99.46
KOG0191	383	consensus Thioredoxin/protein disulfide isomerase	99.45
PTZ00256	183	glutathione peroxidase; Provisional	99.44
cd03017	140	PRX_BCP Peroxiredoxin (PRX) family, Bacterioferrit	99.44
PF02114	265	Phosducin: Phosducin; InterPro: IPR024253 The oute	99.4
smart00594	122	UAS UAS domain.	99.4
PF13899	82	Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_	99.38
PRK09437	154	bcp thioredoxin-dependent thiol peroxidase; Review	99.37
cd03015	173	PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-	99.37
COG4232	569	Thiol:disulfide interchange protein [Posttranslati	99.34
TIGR03137	187	AhpC peroxiredoxin. This gene contains two invaria	99.31
KOG1672	211	consensus ATP binding protein [Posttranslational m	99.31
KOG1731	606	consensus FAD-dependent sulfhydryl oxidase/quiesci	99.31
cd03018	149	PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-lik	99.31
PF13728	215	TraF: F plasmid transfer operon protein	99.28
COG2143	182	Thioredoxin-related protein [Posttranslational mod	99.25
PF14595	129	Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.	99.25
KOG0191	383	consensus Thioredoxin/protein disulfide isomerase	99.24
TIGR02196	74	GlrX_YruB Glutaredoxin-like protein, YruB-family.	99.24
PF13192	76	Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZY	99.23
PRK10606	183	btuE putative glutathione peroxidase; Provisional	99.21
COG0526	127	TrxA Thiol-disulfide isomerase and thioredoxins [P	99.21
PRK13190	202	putative peroxiredoxin; Provisional	99.2
cd02971	140	PRX_family Peroxiredoxin (PRX) family; composed of	99.19
KOG3414	142	consensus Component of the U4/U6.U5 snRNP/mitosis	99.19
TIGR02739	256	TraF type-F conjugative transfer system pilin asse	99.18
TIGR02200	77	GlrX_actino Glutaredoxin-like protein. This family	99.16
PRK15000	200	peroxidase; Provisional	99.16
PRK10382	187	alkyl hydroperoxide reductase subunit C; Provision	99.15
cd02968	142	SCO SCO (an acronym for Synthesis of Cytochrome c	99.15
cd02970	149	PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypot	99.14
PF03190	163	Thioredox_DsbH: Protein of unknown function, DUF25	99.14
KOG2501	157	consensus Thioredoxin, nucleoredoxin and related p	99.13
PRK13703	248	conjugal pilus assembly protein TraF; Provisional	99.12
PF06110	119	DUF953: Eukaryotic protein of unknown function (DU	99.1
COG1225	157	Bcp Peroxiredoxin [Posttranslational modification,	99.08
cd02991	116	UAS_ETEA UAS family, ETEA subfamily; composed of p	99.08
PRK13599	215	putative peroxiredoxin; Provisional	99.08
PTZ00137	261	2-Cys peroxiredoxin; Provisional	99.05
PRK13191	215	putative peroxiredoxin; Provisional	99.05
cd03016	203	PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX sub	99.05
PRK13189	222	peroxiredoxin; Provisional	99.04
cd01659	69	TRX_superfamily Thioredoxin (TRX) superfamily; a l	99.04
PRK11200	85	grxA glutaredoxin 1; Provisional	99.01
PTZ00253	199	tryparedoxin peroxidase; Provisional	99.01
PRK10877	232	protein disulfide isomerase II DsbC; Provisional	98.99
PF11009	105	DUF2847: Protein of unknown function (DUF2847); In	98.95
TIGR02180	84	GRX_euk Glutaredoxin. This model represents eukary	98.94
KOG3425	128	consensus Uncharacterized conserved protein [Funct	98.92
KOG0914	265	consensus Thioredoxin-like protein [Posttranslatio	98.92
TIGR02183	86	GRXA Glutaredoxin, GrxA family. This model include	98.85
PF02966	133	DIM1: Mitosis protein DIM1; InterPro: IPR004123 Th	98.85
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	98.84
cd03023	154	DsbA_Com1_like DsbA family, Com1-like subfamily; c	98.83
cd02976	73	NrdH NrdH-redoxin (NrdH) family; NrdH is a small m	98.83
KOG0911	227	consensus Glutaredoxin-related protein [Posttransl	98.81
PF00462	60	Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Gl	98.77
PRK11657	251	dsbG disulfide isomerase/thiol-disulfide oxidase;	98.76
cd03020	197	DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamil	98.75
TIGR02194	72	GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-red	98.71
TIGR02190	79	GlrX-dom Glutaredoxin-family domain. This C-termin	98.71
PRK10329	81	glutaredoxin-like protein; Provisional	98.67
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	98.66
PHA03050	108	glutaredoxin; Provisional	98.6
PRK10954	207	periplasmic protein disulfide isomerase I; Provisi	98.59
cd03019	178	DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a m	98.58
TIGR02189	99	GlrX-like_plant Glutaredoxin-like family. This fam	98.58
cd03419	82	GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX h	98.56
cd03029	72	GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hyb	98.55
PF13462	162	Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DV	98.54
PF05768	81	DUF836: Glutaredoxin-like domain (DUF836); InterPr	98.53
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	98.5
KOG0913	248	consensus Thiol-disulfide isomerase and thioredoxi	98.5
KOG3171	273	consensus Conserved phosducin-like protein [Signal	98.45
PF13848	184	Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_	98.44
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	98.43
KOG3170	240	consensus Conserved phosducin-like protein [Signal	98.42
cd02066	72	GRX_family Glutaredoxin (GRX) family; composed of	98.41
cd03027	73	GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Eg	98.4
TIGR02181	79	GRX_bact Glutaredoxin, GrxC family. This family of	98.4
cd03418	75	GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX b	98.39
PF07449	107	HyaE: Hydrogenase-1 expression protein HyaE; Inter	98.34
cd03013	155	PRX5_like Peroxiredoxin (PRX) family, PRX5-like su	98.33
COG0695	80	GrxC Glutaredoxin and related proteins [Posttransl	98.25
PF01216	383	Calsequestrin: Calsequestrin; InterPro: IPR001393	98.23
TIGR00365	97	monothiol glutaredoxin, Grx4 family. The gene for	98.23
PRK10638	83	glutaredoxin 3; Provisional	98.21
cd03028	90	GRX_PICOT_like Glutaredoxin (GRX) family, PKC-inte	98.14
cd02983	130	P5_C P5 family, C-terminal redox inactive TRX-like	98.14
PRK10824	115	glutaredoxin-4; Provisional	98.08
COG1331	667	Highly conserved protein containing a thioredoxin	97.92
COG0386	162	BtuE Glutathione peroxidase [Posttranslational mod	97.87
cd03072	111	PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second	97.87
cd02972	98	DsbA_family DsbA family; consists of DsbA and DsbA	97.86
PTZ00062	204	glutaredoxin; Provisional	97.81
KOG1752	104	consensus Glutaredoxin and related proteins [Postt	97.74
COG1651	244	DsbG Protein-disulfide isomerase [Posttranslationa	97.72
PRK12759	410	bifunctional gluaredoxin/ribonucleoside-diphosphat	97.69
cd02981	97	PDI_b_family Protein Disulfide Isomerase (PDIb) fa	97.69
PF01323	193	DSBA: DSBA-like thioredoxin domain; InterPro: IPR0	97.65
cd03073	111	PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 s	97.65
COG1999	207	Uncharacterized protein SCO1/SenC/PrrC, involved i	97.6
PF00837	237	T4_deiodinase: Iodothyronine deiodinase; InterPro:	97.6
KOG1651	171	consensus Glutathione peroxidase [Posttranslationa	97.58
COG0450	194	AhpC Peroxiredoxin [Posttranslational modification	97.56
KOG0855	211	consensus Alkyl hydroperoxide reductase, thiol spe	97.37
PF07912	126	ERp29_N: ERp29, N-terminal domain; InterPro: IPR01	97.29
KOG2603	331	consensus Oligosaccharyltransferase, gamma subunit	97.26
PF02630	174	SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This fam	97.23
cd03031	147	GRX_GRX_like Glutaredoxin (GRX) family, GRX-like d	97.22
PF13743	176	Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.	97.1
cd02978	72	KaiB_like KaiB-like family; composed of the circad	96.92
cd03041	77	GST_N_2GST_N GST_N family, 2 repeats of the N-term	96.84
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	96.81
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	96.8
cd02974	94	AhpF_NTD_N Alkyl hydroperoxide reductase F subunit	96.77
cd03040	77	GST_N_mPGES2 GST_N family; microsomal Prostaglandi	96.63
COG2761	225	FrnE Predicted dithiol-disulfide isomerase involve	96.59
cd03067	112	PDI_b_PDIR_N PDIb family, PDIR subfamily, N-termin	96.52
KOG2792	280	consensus Putative cytochrome C oxidase assembly p	96.48
cd02990	136	UAS_FAF1 UAS family, FAS-associated factor 1 (FAF1	96.43
cd03066	102	PDI_b_Calsequestrin_middle PDIb family, Calsequest	96.38
COG4545	85	Glutaredoxin-related protein [Posttranslational mo	96.38
PRK09301	103	circadian clock protein KaiB; Provisional	96.35
TIGR02654	87	circ_KaiB circadian clock protein KaiB. Members of	96.35
PF06764	202	DUF1223: Protein of unknown function (DUF1223); In	96.23
COG2077	158	Tpx Peroxiredoxin [Posttranslational modification,	96.22
KOG2507	506	consensus Ubiquitin regulatory protein UBXD2, cont	96.21
COG3019	149	Predicted metal-binding protein [General function	95.99
cd03037	71	GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) sub	95.98
cd03060	71	GST_N_Omega_like GST_N family, Omega-like subfamil	95.97
cd03069	104	PDI_b_ERp57 PDIb family, ERp57 subfamily, first re	95.82
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	95.81
cd02977	105	ArsC_family Arsenate Reductase (ArsC) family; comp	95.77
COG3531	212	Predicted protein-disulfide isomerase [Posttransla	95.68
PF13848	184	Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_	95.58
PHA03075	123	glutaredoxin-like protein; Provisional	95.47
KOG0852	196	consensus Alkyl hydroperoxide reductase, thiol spe	95.15
PRK01655	131	spxA transcriptional regulator Spx; Reviewed	95.06
cd03036	111	ArsC_like Arsenate Reductase (ArsC) family, unknow	95.05
TIGR01617	117	arsC_related transcriptional regulator, Spx/MgsR f	94.86
KOG2640	319	consensus Thioredoxin [Function unknown]	94.5
PF06053	249	DUF929: Domain of unknown function (DUF929); Inter	94.5
cd03035	105	ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb s	94.48
cd00570	71	GST_N_family Glutathione S-transferase (GST) famil	94.46
cd03059	73	GST_N_SspA GST_N family, Stringent starvation prot	94.28
PF04592	238	SelP_N: Selenoprotein P, N terminal region; InterP	94.23
PF13417	75	GST_N_3: Glutathione S-transferase, N-terminal dom	94.13
PF07689	82	KaiB: KaiB domain; InterPro: IPR011649 The cyanoba	94.09
cd03032	115	ArsC_Spx Arsenate Reductase (ArsC) family, Spx sub	93.93
PF00255	108	GSHPx: Glutathione peroxidase; InterPro: IPR000889	93.65
PRK12559	131	transcriptional regulator Spx; Provisional	93.62
cd03045	74	GST_N_Delta_Epsilon GST_N family, Class Delta and	93.53
PF06953	123	ArsD: Arsenical resistance operon trans-acting rep	93.42
COG5429	261	Uncharacterized secreted protein [Function unknown	93.28
TIGR02742	130	TrbC_Ftype type-F conjugative transfer system pili	93.27
cd03051	74	GST_N_GTT2_like GST_N family, Saccharomyces cerevi	92.98
PRK13344	132	spxA transcriptional regulator Spx; Reviewed	92.34
cd03055	89	GST_N_Omega GST_N family, Class Omega subfamily; G	91.67
cd03074	120	PDI_b'_Calsequestrin_C Protein Disulfide Isomerase	90.93
PF09673	113	TrbC_Ftype: Type-F conjugative transfer system pil	90.63
cd03068	107	PDI_b_ERp72 PDIb family, ERp72 subfamily, first re	90.55
cd03024	201	DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a D	90.39
PF13778	118	DUF4174: Domain of unknown function (DUF4174)	90.3
cd03025	193	DsbA_FrnE_like DsbA family, FrnE-like subfamily; c	89.37
cd03056	73	GST_N_4 GST_N family, unknown subfamily 4; compose	88.98
cd03022	192	DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-car	88.51
cd03033	113	ArsC_15kD Arsenate Reductase (ArsC) family, 15kD p	88.43
PF04134	114	DUF393: Protein of unknown function, DUF393; Inter	86.91
TIGR00014	114	arsC arsenate reductase (glutaredoxin). composed o	84.8
COG0278	105	Glutaredoxin-related protein [Posttranslational mo	84.08
cd03034	112	ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC s	83.96
COG3011	137	Predicted thiol-disulfide oxidoreductase [General	83.12
cd03052	73	GST_N_GDAP1 GST_N family, Ganglioside-induced diff	83.07
PRK00366	360	ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate s	81.2

>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=3.4e-26  Score=142.83  Aligned_cols=106  Identities=32%  Similarity=0.671  Sum_probs=97.6

Q ss_pred             CceEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCC-cEEEEEeCCcchhhhhhCCCcceeE
Q 032502           24 GNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVDELVEFSTSWDIKATPT  102 (139)
Q Consensus        24 ~~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~-v~~~~vd~~~~~~~~~~~~v~~~Pt  102 (139)
                      .....+.+.++|++.+.   .++.||+|.|||+||++|+.+.|.|+++..+|.+ ++|+.+|.|++.+++.+|+|..+||
T Consensus        42 ~~~~~~~s~~~~~~~Vi---~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~ela~~Y~I~avPt  118 (150)
T KOG0910|consen   42 ATLFNVQSDSEFDDKVI---NSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPELAEDYEISAVPT  118 (150)
T ss_pred             cccccccCHHHHHHHHH---ccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEccccccchHhhcceeeeeE
Confidence            34566678888988875   5689999999999999999999999999999876 9999999999999999999999999


Q ss_pred             EEEEeCCeEEEEEeCC-ChHHHHHHHHHHhh
Q 032502          103 FFFLKDGQQVDKLVGA-NKPELQKKVAAAVD  132 (139)
Q Consensus       103 ~~~~~~g~~~~~~~g~-~~~~l~~~i~~~~~  132 (139)
                      +++|+||....++.|. +.+.|..+|++++.
T Consensus       119 vlvfknGe~~d~~vG~~~~~~l~~~i~k~l~  149 (150)
T KOG0910|consen  119 VLVFKNGEKVDRFVGAVPKEQLRSLIKKFLK  149 (150)
T ss_pred             EEEEECCEEeeeecccCCHHHHHHHHHHHhc
Confidence            9999999999999999 99999999999875

>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=1.6e-24  Score=130.42  Aligned_cols=101  Identities=51%  Similarity=0.895  Sum_probs=90.3

Q ss_pred             echhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhhhhhCCCcceeEEEEEeCC
Q 032502           30 TTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDG  109 (139)
Q Consensus        30 ~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g  109 (139)
                      .+.++++.....+...+++++++||++||++|+.+.|.+.+++.+|+++.|+.+|+|++.++++.|+|..+|||+++++|
T Consensus         5 ~~~~~~~~~~~~~~~~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~v~Flkvdvde~~~~~~~~~V~~~PTf~f~k~g   84 (106)
T KOG0907|consen    5 ETVSDLDLVLSAAEAGDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPDVVFLKVDVDELEEVAKEFNVKAMPTFVFYKGG   84 (106)
T ss_pred             EehhhHHHHHHHhhCCCCeEEEEEECCCCcchhhhhhHHHHHHHHCCCCEEEEEecccCHhHHHhcCceEeeEEEEEECC
Confidence            44555666666665667999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEEeCCChHHHHHHHHHH
Q 032502          110 QQVDKLVGANKPELQKKVAAA  130 (139)
Q Consensus       110 ~~~~~~~g~~~~~l~~~i~~~  130 (139)
                      +.+.+..|.+..++.+.|...
T Consensus        85 ~~~~~~vGa~~~~l~~~i~~~  105 (106)
T KOG0907|consen   85 EEVDEVVGANKAELEKKIAKH  105 (106)
T ss_pred             EEEEEEecCCHHHHHHHHHhc
Confidence            999999999888888877653

>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif

Probab=99.92  E-value=5.1e-24  Score=128.59  Aligned_cols=97  Identities=29%  Similarity=0.474  Sum_probs=85.7

Q ss_pred             chhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcch---hhhhhCCCcceeEEEEEe
Q 032502           31 TKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELV---EFSTSWDIKATPTFFFLK  107 (139)
Q Consensus        31 ~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~---~~~~~~~v~~~Pt~~~~~  107 (139)
                      +.+++++.+..  .+++++||.||++||++|+.+.|.|+++++.++++.|+.+|.+++.   .++++|+|.++||+++|+
T Consensus         2 ~~~~~~~~i~~--~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~   79 (103)
T cd02985           2 SVEELDEALKK--AKGRLVVLEFALKHSGPSVKIYPTMVKLSRTCNDVVFLLVNGDENDSTMELCRREKIIEVPHFLFYK   79 (103)
T ss_pred             CHHHHHHHHHH--cCCCEEEEEEECCCCHhHHHHhHHHHHHHHHCCCCEEEEEECCCChHHHHHHHHcCCCcCCEEEEEe
Confidence            45677777742  3489999999999999999999999999999988999999999874   789999999999999999


Q ss_pred             CCeEEEEEeCCChHHHHHHHHH
Q 032502          108 DGQQVDKLVGANKPELQKKVAA  129 (139)
Q Consensus       108 ~g~~~~~~~g~~~~~l~~~i~~  129 (139)
                      +|+++.++.|...++|...+..
T Consensus        80 ~G~~v~~~~G~~~~~l~~~~~~  101 (103)
T cd02985          80 DGEKIHEEEGIGPDELIGDVLY  101 (103)
T ss_pred             CCeEEEEEeCCCHHHHHHHHHh
Confidence            9999999999988888877654

CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.

>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein

Probab=99.92  E-value=3e-24  Score=130.26  Aligned_cols=85  Identities=22%  Similarity=0.466  Sum_probs=75.6

Q ss_pred             hhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCC-cEEEEEeCCcchhhhhhCCCcceeEEEEEeCCe
Q 032502           32 KDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQ  110 (139)
Q Consensus        32 ~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~-v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~  110 (139)
                      .++++..+..  .+++++||.||++||++|+.+.|.+++++.++++ +.|+.||+|++++++.+|+|.++||+++|++|+
T Consensus         2 ~~~~~~~i~~--~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~~la~~~~V~~iPTf~~fk~G~   79 (114)
T cd02954           2 GWAVDQAILS--EEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVPDFNKMYELYDPPTVMFFFRNK   79 (114)
T ss_pred             HHHHHHHHhc--cCCCEEEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCCHHHHHHcCCCCCCEEEEEECCE
Confidence            3455555531  2578999999999999999999999999999987 789999999999999999999999999999999


Q ss_pred             EEEEEeCC
Q 032502          111 QVDKLVGA  118 (139)
Q Consensus       111 ~~~~~~g~  118 (139)
                      .+.+..|.
T Consensus        80 ~v~~~~G~   87 (114)
T cd02954          80 HMKIDLGT   87 (114)
T ss_pred             EEEEEcCC
Confidence            99988774

It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.

>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein

Probab=99.91  E-value=2.3e-23  Score=125.55  Aligned_cols=97  Identities=25%  Similarity=0.643  Sum_probs=86.5

Q ss_pred             eechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCC--cEEEEEeCCcchhhhhhCCCcceeEEEEE
Q 032502           29 VTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS--LMFLLVDVDELVEFSTSWDIKATPTFFFL  106 (139)
Q Consensus        29 i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~--v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~  106 (139)
                      +.+.++++..+    .++++++|+||++||++|+.+.|.++++++.+++  +.|+.+|.+ +.+++++|+|.++||+++|
T Consensus         4 i~~~~~~~~~i----~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~~~~~~~~~v~~~Pt~~~~   78 (102)
T cd02948           4 INNQEEWEELL----SNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-TIDTLKRYRGKCEPTFLFY   78 (102)
T ss_pred             ccCHHHHHHHH----ccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-CHHHHHHcCCCcCcEEEEE
Confidence            45677777766    4688999999999999999999999999999863  789999999 7788999999999999999


Q ss_pred             eCCeEEEEEeCCChHHHHHHHHHH
Q 032502          107 KDGQQVDKLVGANKPELQKKVAAA  130 (139)
Q Consensus       107 ~~g~~~~~~~g~~~~~l~~~i~~~  130 (139)
                      ++|+.+.+..|.+.+.+.++|+++
T Consensus        79 ~~g~~~~~~~G~~~~~~~~~i~~~  102 (102)
T cd02948          79 KNGELVAVIRGANAPLLNKTITEL  102 (102)
T ss_pred             ECCEEEEEEecCChHHHHHHHhhC
Confidence            999999999999888898888753

Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which

>PHA02278 thioredoxin-like protein

Probab=99.91  E-value=1.7e-23  Score=125.78  Aligned_cols=92  Identities=23%  Similarity=0.309  Sum_probs=79.7

Q ss_pred             chhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCC-CcEEEEEeCCcc----hhhhhhCCCcceeEEEE
Q 032502           31 TKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP-SLMFLLVDVDEL----VEFSTSWDIKATPTFFF  105 (139)
Q Consensus        31 ~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~-~v~~~~vd~~~~----~~~~~~~~v~~~Pt~~~  105 (139)
                      +.++|...+    .+++++||+|||+||++|+.+.|.++++++++. .+.|+.+|++.+    +.++++|+|.++||+++
T Consensus         3 ~~~~~~~~i----~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~   78 (103)
T PHA02278          3 SLVDLNTAI----RQKKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLIG   78 (103)
T ss_pred             CHHHHHHHH----hCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccccEEEE
Confidence            455666666    468999999999999999999999999988753 478999999976    68999999999999999


Q ss_pred             EeCCeEEEEEeCC-ChHHHHHH
Q 032502          106 LKDGQQVDKLVGA-NKPELQKK  126 (139)
Q Consensus       106 ~~~g~~~~~~~g~-~~~~l~~~  126 (139)
                      |++|+.+.+..|. +.+.|.++
T Consensus        79 fk~G~~v~~~~G~~~~~~l~~~  100 (103)
T PHA02278         79 YKDGQLVKKYEDQVTPMQLQEL  100 (103)
T ss_pred             EECCEEEEEEeCCCCHHHHHhh
Confidence            9999999999997 77777653

>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms

Probab=99.91  E-value=1.2e-22  Score=122.23  Aligned_cols=99  Identities=29%  Similarity=0.630  Sum_probs=91.1

Q ss_pred             eechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCC-CcEEEEEeCCcchhhhhhCCCcceeEEEEEe
Q 032502           29 VTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP-SLMFLLVDVDELVEFSTSWDIKATPTFFFLK  107 (139)
Q Consensus        29 i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~-~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~  107 (139)
                      ..+.++|++.+.   .+++++||+||++||+.|+.+.|.+.++++.++ ++.|+.+|+++++.++++|+|.++||+++++
T Consensus         3 ~lt~~~f~~~i~---~~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~   79 (103)
T PF00085_consen    3 VLTDENFEKFIN---ESDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENKELCKKYGVKSVPTIIFFK   79 (103)
T ss_dssp             EESTTTHHHHHT---TTSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSHHHHHHTTCSSSSEEEEEE
T ss_pred             ECCHHHHHHHHH---ccCCCEEEEEeCCCCCccccccceecccccccccccccchhhhhccchhhhccCCCCCCEEEEEE
Confidence            356778888874   247999999999999999999999999999998 7999999999999999999999999999999


Q ss_pred             CCeEEEEEeCC-ChHHHHHHHHHH
Q 032502          108 DGQQVDKLVGA-NKPELQKKVAAA  130 (139)
Q Consensus       108 ~g~~~~~~~g~-~~~~l~~~i~~~  130 (139)
                      +|+...++.|. +.+.|.++|++.
T Consensus        80 ~g~~~~~~~g~~~~~~l~~~i~~~  103 (103)
T PF00085_consen   80 NGKEVKRYNGPRNAESLIEFIEKH  103 (103)
T ss_dssp             TTEEEEEEESSSSHHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCHHHHHHHHHcC
Confidence            99999999999 999999999863

Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....

>PLN00410 U5 snRNP protein, DIM1 family; Provisional

Probab=99.90  E-value=9.7e-23  Score=128.06  Aligned_cols=109  Identities=19%  Similarity=0.369  Sum_probs=95.1

Q ss_pred             eEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCC-cEEEEEeCCcchhhhhhCCCcceeEEE
Q 032502           26 VSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVDELVEFSTSWDIKATPTFF  104 (139)
Q Consensus        26 ~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~-v~~~~vd~~~~~~~~~~~~v~~~Pt~~  104 (139)
                      ++.+.+..++++.+...  .+++|||.||++||++|+.+.|.|+++++++++ +.|+.||+|++++++..|+|.+.|+++
T Consensus         5 l~~l~s~~e~d~~I~~~--~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~dla~~y~I~~~~t~~   82 (142)
T PLN00410          5 LPHLHSGWAVDQAILAE--EERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPCTVM   82 (142)
T ss_pred             HhhhCCHHHHHHHHHhc--CCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCCHHHHHHcCccCCCcEE
Confidence            45667888888888633  588999999999999999999999999999988 888999999999999999999887766


Q ss_pred             -EEeCCe-EEEEEeC--------C-ChHHHHHHHHHHhhccCC
Q 032502          105 -FLKDGQ-QVDKLVG--------A-NKPELQKKVAAAVDSVVP  136 (139)
Q Consensus       105 -~~~~g~-~~~~~~g--------~-~~~~l~~~i~~~~~~~~~  136 (139)
                       +|++|+ .+.+..|        . +.++|.+.++.++..+..
T Consensus        83 ~ffk~g~~~vd~~tG~~~k~~~~~~~k~~l~~~i~~~~~~a~~  125 (142)
T PLN00410         83 FFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYRGARK  125 (142)
T ss_pred             EEEECCeEEEEEecccccccccccCCHHHHHHHHHHHHHHHhc
Confidence             779999 8888888        5 889999999998876543

>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif

Probab=99.90  E-value=1e-22  Score=124.68  Aligned_cols=92  Identities=22%  Similarity=0.361  Sum_probs=84.9

Q ss_pred             CCceEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhhhhhCCCcceeE
Q 032502           23 GGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPT  102 (139)
Q Consensus        23 ~~~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt  102 (139)
                      .+.+..+.+.++|.+.+    .++++++|+||++||+.|+.+.|.+++++++++++.|+.+|.++++.++++|+|.++||
T Consensus         3 ~g~v~~i~~~~~~~~~i----~~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~i~f~~Vd~~~~~~l~~~~~v~~vPt   78 (113)
T cd02989           3 HGKYREVSDEKEFFEIV----KSSERVVCHFYHPEFFRCKIMDKHLEILAKKHLETKFIKVNAEKAPFLVEKLNIKVLPT   78 (113)
T ss_pred             CCCeEEeCCHHHHHHHH----hCCCcEEEEEECCCCccHHHHHHHHHHHHHHcCCCEEEEEEcccCHHHHHHCCCccCCE
Confidence            46788888888888887    35689999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCeEEEEEeCC
Q 032502          103 FFFLKDGQQVDKLVGA  118 (139)
Q Consensus       103 ~~~~~~g~~~~~~~g~  118 (139)
                      +++|++|+.+.++.|.
T Consensus        79 ~l~fk~G~~v~~~~g~   94 (113)
T cd02989          79 VILFKNGKTVDRIVGF   94 (113)
T ss_pred             EEEEECCEEEEEEECc
Confidence            9999999999988765

The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.

>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox

Probab=99.90  E-value=1.7e-22  Score=123.37  Aligned_cols=100  Identities=12%  Similarity=0.128  Sum_probs=84.6

Q ss_pred             ceEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCC-cEEEEEeCCcchhhh-hhCCCcceeE
Q 032502           25 NVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVDELVEFS-TSWDIKATPT  102 (139)
Q Consensus        25 ~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~-v~~~~vd~~~~~~~~-~~~~v~~~Pt  102 (139)
                      .+.+ .+.++|++.+.- ..+++++||.||++||++|+.+.|.++++++.+.+ +.|+.||++++..++ ++|+|.++||
T Consensus        10 ~v~~-l~~~~f~~~~~v-~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~~l~~~~~~I~~~PT   87 (113)
T cd03006          10 PVLD-FYKGQLDYAEEL-RTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQGKCRKQKHFFYFPV   87 (113)
T ss_pred             CeEE-echhhhHHHHhc-ccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCChHHHHHhcCCcccCE
Confidence            3444 356667665321 25689999999999999999999999999999976 899999999999998 5899999999


Q ss_pred             EEEEeCCeEEEEEeCC-ChHHHHHH
Q 032502          103 FFFLKDGQQVDKLVGA-NKPELQKK  126 (139)
Q Consensus       103 ~~~~~~g~~~~~~~g~-~~~~l~~~  126 (139)
                      +++|++|+....+.|. +.+.|..+
T Consensus        88 l~lf~~g~~~~~y~G~~~~~~i~~~  112 (113)
T cd03006          88 IHLYYRSRGPIEYKGPMRAPYMEKF  112 (113)
T ss_pred             EEEEECCccceEEeCCCCHHHHHhh
Confidence            9999999988888888 88888765

ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.

>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain

Probab=99.90  E-value=1.1e-22  Score=121.22  Aligned_cols=93  Identities=24%  Similarity=0.472  Sum_probs=82.0

Q ss_pred             HHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCC-cEEEEEeCCcchhhhhhCCCcceeEEEEEeCCeEE
Q 032502           34 IWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQV  112 (139)
Q Consensus        34 ~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~-v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~  112 (139)
                      +|++.+..  ..+++++|+||++||++|+.+.|.++++++.+++ +.++.+|++++..++++|+|.++||++++++|+.+
T Consensus         2 ~f~~~i~~--~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~   79 (96)
T cd02956           2 NFQQVLQE--STQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQPQIAQQFGVQALPTVYLFAAGQPV   79 (96)
T ss_pred             ChHHHHHh--cCCCeEEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCHHHHHHcCCCCCCEEEEEeCCEEe
Confidence            35555532  2378999999999999999999999999999874 88999999999999999999999999999999999


Q ss_pred             EEEeCC-ChHHHHHHHH
Q 032502          113 DKLVGA-NKPELQKKVA  128 (139)
Q Consensus       113 ~~~~g~-~~~~l~~~i~  128 (139)
                      .++.|. +.++|.++|+
T Consensus        80 ~~~~g~~~~~~l~~~l~   96 (96)
T cd02956          80 DGFQGAQPEEQLRQMLD   96 (96)
T ss_pred             eeecCCCCHHHHHHHhC
Confidence            999998 8888888763

Its gene has been sequenced from several gammaproteobacteria and actinobacteria.

>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle

Probab=99.90  E-value=1.8e-22  Score=124.07  Aligned_cols=98  Identities=12%  Similarity=0.200  Sum_probs=87.7

Q ss_pred             echhHHHHHHHHHhhCCCEEEEEEeCCCChh--hh--hhhHhHHHHHHhC--C-CcEEEEEeCCcchhhhhhCCCcceeE
Q 032502           30 TTKDIWDQKMSEASKEGKIVIANFSATWCGP--CR--MIAPFFSELSEKY--P-SLMFLLVDVDELVEFSTSWDIKATPT  102 (139)
Q Consensus        30 ~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~--C~--~~~~~l~~~~~~~--~-~v~~~~vd~~~~~~~~~~~~v~~~Pt  102 (139)
                      .+.++|++.+.   .++.++|++||+.||++  |+  .+.|.+.+++.++  . ++.|+.||+++++.++.+|+|+++||
T Consensus        14 lt~~nF~~~v~---~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~La~~~~I~~iPT   90 (120)
T cd03065          14 LNEKNYKQVLK---KYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAKVAKKLGLDEEDS   90 (120)
T ss_pred             CChhhHHHHHH---hCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHHHHHHcCCccccE
Confidence            35788988885   45779999999999976  99  8889999998887  4 59999999999999999999999999


Q ss_pred             EEEEeCCeEEEEEeCC-ChHHHHHHHHHHh
Q 032502          103 FFFLKDGQQVDKLVGA-NKPELQKKVAAAV  131 (139)
Q Consensus       103 ~~~~~~g~~~~~~~g~-~~~~l~~~i~~~~  131 (139)
                      +++|++|+++. +.|. +.+.|..+|.+++
T Consensus        91 l~lfk~G~~v~-~~G~~~~~~l~~~l~~~~  119 (120)
T cd03065          91 IYVFKDDEVIE-YDGEFAADTLVEFLLDLI  119 (120)
T ss_pred             EEEEECCEEEE-eeCCCCHHHHHHHHHHHh
Confidence            99999999887 8898 9999999999875

It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2

>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44

Probab=99.90  E-value=5.1e-23  Score=123.52  Aligned_cols=83  Identities=17%  Similarity=0.328  Sum_probs=76.9

Q ss_pred             hCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCC-cchhhhhhCCCcceeEEEEEeCCeEEEEEeCC-ChH
Q 032502           44 KEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVD-ELVEFSTSWDIKATPTFFFLKDGQQVDKLVGA-NKP  121 (139)
Q Consensus        44 ~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~-~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~  121 (139)
                      .++++++|.||++||++|+.+.|.++++++.++++.++.+|.+ +++.++++|+|.++||+++|++| .+.++.|. +.+
T Consensus        16 ~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~~~~~~vd~~~~~~~l~~~~~V~~~PT~~lf~~g-~~~~~~G~~~~~   94 (100)
T cd02999          16 NREDYTAVLFYASWCPFSASFRPHFNALSSMFPQIRHLAIEESSIKPSLLSRYGVVGFPTILLFNST-PRVRYNGTRTLD   94 (100)
T ss_pred             cCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhccCceEEEECCCCCHHHHHhcCCeecCEEEEEcCC-ceeEecCCCCHH
Confidence            5799999999999999999999999999999999999999999 78999999999999999999998 77888898 888


Q ss_pred             HHHHHH
Q 032502          122 ELQKKV  127 (139)
Q Consensus       122 ~l~~~i  127 (139)
                      .|.+||
T Consensus        95 ~l~~f~  100 (100)
T cd02999          95 SLAAFY  100 (100)
T ss_pred             HHHhhC
Confidence            887764

CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.

>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain

Probab=99.90  E-value=1e-22  Score=124.42  Aligned_cols=99  Identities=14%  Similarity=0.232  Sum_probs=85.5

Q ss_pred             chhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCC--CcEEEEEeCCcchhhhhhCCCcceeEEEEEeC
Q 032502           31 TKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP--SLMFLLVDVDELVEFSTSWDIKATPTFFFLKD  108 (139)
Q Consensus        31 ~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~  108 (139)
                      +..+|.+.+.. ...+++++|.||++||++|+.+.|.+.+++++++  ++.++.+|+++++.++.+|+|.++||+++|++
T Consensus        10 ~~~~~~~~~~~-~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~l~~~~~V~~~Pt~~i~~~   88 (111)
T cd02963          10 TFSQYENEIVP-KSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERRLARKLGAHSVPAIVGIIN   88 (111)
T ss_pred             eHHHHHHhhcc-ccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHHHHHHcCCccCCEEEEEEC
Confidence            45556544422 1357999999999999999999999999999986  48999999999999999999999999999999


Q ss_pred             CeEEEEEeCC-ChHHHHHHHHHH
Q 032502          109 GQQVDKLVGA-NKPELQKKVAAA  130 (139)
Q Consensus       109 g~~~~~~~g~-~~~~l~~~i~~~  130 (139)
                      |+.+.+..|. +.+.|.++|+++
T Consensus        89 g~~~~~~~G~~~~~~l~~~i~~~  111 (111)
T cd02963          89 GQVTFYHDSSFTKQHVVDFVRKL  111 (111)
T ss_pred             CEEEEEecCCCCHHHHHHHHhcC
Confidence            9999998897 888898888753

DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.

>PRK09381 trxA thioredoxin; Provisional

Probab=99.89  E-value=6.9e-22  Score=120.37  Aligned_cols=103  Identities=29%  Similarity=0.643  Sum_probs=90.4

Q ss_pred             ceEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCC-cEEEEEeCCcchhhhhhCCCcceeEE
Q 032502           25 NVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVDELVEFSTSWDIKATPTF  103 (139)
Q Consensus        25 ~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~-v~~~~vd~~~~~~~~~~~~v~~~Pt~  103 (139)
                      .+.++ +.++|.+.+.   ..+++++|+||++||++|+.+.|.++++++++++ +.++.+|++..+.++++|++.++||+
T Consensus         4 ~v~~~-~~~~~~~~v~---~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~   79 (109)
T PRK09381          4 KIIHL-TDDSFDTDVL---KADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTL   79 (109)
T ss_pred             cceee-ChhhHHHHHh---cCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChhHHHhCCCCcCCEE
Confidence            34455 4467776653   3578999999999999999999999999999964 89999999999999999999999999


Q ss_pred             EEEeCCeEEEEEeCC-ChHHHHHHHHHHh
Q 032502          104 FFLKDGQQVDKLVGA-NKPELQKKVAAAV  131 (139)
Q Consensus       104 ~~~~~g~~~~~~~g~-~~~~l~~~i~~~~  131 (139)
                      +++++|+++.+..|. +.++|..+|++.+
T Consensus        80 ~~~~~G~~~~~~~G~~~~~~l~~~i~~~~  108 (109)
T PRK09381         80 LLFKNGEVAATKVGALSKGQLKEFLDANL  108 (109)
T ss_pred             EEEeCCeEEEEecCCCCHHHHHHHHHHhc
Confidence            999999999999998 8899999998875

>PRK10996 thioredoxin 2; Provisional

Probab=99.89  E-value=1.4e-21  Score=123.86  Aligned_cols=104  Identities=32%  Similarity=0.613  Sum_probs=90.3

Q ss_pred             CCceEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCC-CcEEEEEeCCcchhhhhhCCCccee
Q 032502           23 GGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP-SLMFLLVDVDELVEFSTSWDIKATP  101 (139)
Q Consensus        23 ~~~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~-~v~~~~vd~~~~~~~~~~~~v~~~P  101 (139)
                      .+.+..+ +.+++++.+    .++++++|+||++||++|+.+.+.+.++++++. ++.|+.+|.++++.++++|+|.++|
T Consensus        34 ~~~~i~~-~~~~~~~~i----~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~V~~~P  108 (139)
T PRK10996         34 DGEVINA-TGETLDKLL----QDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAERELSARFRIRSIP  108 (139)
T ss_pred             CCCCEEc-CHHHHHHHH----hCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCHHHHHhcCCCccC
Confidence            3334443 566776655    458999999999999999999999999998876 5999999999999999999999999


Q ss_pred             EEEEEeCCeEEEEEeCC-ChHHHHHHHHHHh
Q 032502          102 TFFFLKDGQQVDKLVGA-NKPELQKKVAAAV  131 (139)
Q Consensus       102 t~~~~~~g~~~~~~~g~-~~~~l~~~i~~~~  131 (139)
                      |+++|++|+++.++.|. +.+.|.++|++++
T Consensus       109 tlii~~~G~~v~~~~G~~~~e~l~~~l~~~~  139 (139)
T PRK10996        109 TIMIFKNGQVVDMLNGAVPKAPFDSWLNEAL  139 (139)
T ss_pred             EEEEEECCEEEEEEcCCCCHHHHHHHHHHhC
Confidence            99999999999999998 8899999998764

>PTZ00051 thioredoxin; Provisional

Probab=99.89  E-value=5.6e-22  Score=118.53  Aligned_cols=95  Identities=42%  Similarity=0.835  Sum_probs=85.9

Q ss_pred             eEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhhhhhCCCcceeEEEE
Q 032502           26 VSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFF  105 (139)
Q Consensus        26 ~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~  105 (139)
                      +..+.+.+++...+    ..+++++++||++||++|+.+.+.+++++++++++.|+.+|++++..++++|++.++||+++
T Consensus         2 v~~i~~~~~~~~~~----~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~   77 (98)
T PTZ00051          2 VHIVTSQAEFESTL----SQNELVIVDFYAEWCGPCKRIAPFYEECSKEYTKMVFVKVDVDELSEVAEKENITSMPTFKV   77 (98)
T ss_pred             eEEecCHHHHHHHH----hcCCeEEEEEECCCCHHHHHHhHHHHHHHHHcCCcEEEEEECcchHHHHHHCCCceeeEEEE
Confidence            55677777777766    46789999999999999999999999999999899999999999999999999999999999


Q ss_pred             EeCCeEEEEEeCCChHHHH
Q 032502          106 LKDGQQVDKLVGANKPELQ  124 (139)
Q Consensus       106 ~~~g~~~~~~~g~~~~~l~  124 (139)
                      +++|+++.++.|...++|.
T Consensus        78 ~~~g~~~~~~~G~~~~~~~   96 (98)
T PTZ00051         78 FKNGSVVDTLLGANDEALK   96 (98)
T ss_pred             EeCCeEEEEEeCCCHHHhh
Confidence            9999999999998777664

>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=99.89  E-value=1.6e-22  Score=121.58  Aligned_cols=92  Identities=21%  Similarity=0.407  Sum_probs=82.2

Q ss_pred             chhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCC-cEEEEEeCCcchhhhhhCCCcceeEEEEEeCC
Q 032502           31 TKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVDELVEFSTSWDIKATPTFFFLKDG  109 (139)
Q Consensus        31 ~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~-v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g  109 (139)
                      +.++|++.+    .++++++|.||++||++|+.+.|.++++++++++ +.|+.+|+++++.++++|+|.++||+++|++|
T Consensus         7 ~~~~f~~~v----~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g   82 (101)
T cd03003           7 DRGDFDAAV----NSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRMLCRSQGVNSYPSLYVFPSG   82 (101)
T ss_pred             CHhhHHHHh----cCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccHHHHHHcCCCccCEEEEEcCC
Confidence            566777766    3568999999999999999999999999999975 89999999999999999999999999999999


Q ss_pred             eEEEEEeCC-ChHHHHHH
Q 032502          110 QQVDKLVGA-NKPELQKK  126 (139)
Q Consensus       110 ~~~~~~~g~-~~~~l~~~  126 (139)
                      +...++.|. +.+.|.++
T Consensus        83 ~~~~~~~G~~~~~~l~~f  100 (101)
T cd03003          83 MNPEKYYGDRSKESLVKF  100 (101)
T ss_pred             CCcccCCCCCCHHHHHhh
Confidence            988888887 77777664

This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.

>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=99.89  E-value=3.5e-22  Score=120.68  Aligned_cols=94  Identities=17%  Similarity=0.341  Sum_probs=82.7

Q ss_pred             chhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCC-cEEEEEeCCcchhhhhhCCCcceeEEEEEeCC
Q 032502           31 TKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVDELVEFSTSWDIKATPTFFFLKDG  109 (139)
Q Consensus        31 ~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~-v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g  109 (139)
                      +.++|++.+.   .++++++|.||++||++|+.+.|.++++++++.+ +.|+.+|+++++.++++|+|.++||+++|++|
T Consensus         7 ~~~~f~~~i~---~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g   83 (104)
T cd03004           7 TPEDFPELVL---NRKEPWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKYESLCQQANIRAYPTIRLYPGN   83 (104)
T ss_pred             CHHHHHHHHh---cCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCchHHHHHHcCCCcccEEEEEcCC
Confidence            5667777664   4577999999999999999999999999999864 89999999999999999999999999999877


Q ss_pred             -eEEEEEeCC-C-hHHHHHHH
Q 032502          110 -QQVDKLVGA-N-KPELQKKV  127 (139)
Q Consensus       110 -~~~~~~~g~-~-~~~l~~~i  127 (139)
                       +...++.|. + .++|..+|
T Consensus        84 ~~~~~~~~G~~~~~~~l~~~i  104 (104)
T cd03004          84 ASKYHSYNGWHRDADSILEFI  104 (104)
T ss_pred             CCCceEccCCCCCHHHHHhhC
Confidence             888889887 6 88887664

This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.

>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions

Probab=99.89  E-value=4.5e-22  Score=121.99  Aligned_cols=93  Identities=25%  Similarity=0.501  Sum_probs=82.2

Q ss_pred             CCceEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhhhhhCCCcceeE
Q 032502           23 GGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPT  102 (139)
Q Consensus        23 ~~~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt  102 (139)
                      .+.+..+.. ++|.+.+... ..+++++|+||++||+.|+.+.|.+++++++++++.|+.+|++++ .++.+|+|.++||
T Consensus         3 ~g~v~~i~~-~~f~~~i~~~-~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~v~f~~vd~~~~-~l~~~~~i~~~Pt   79 (113)
T cd02957           3 FGEVREISS-KEFLEEVTKA-SKGTRVVVHFYEPGFPRCKILDSHLEELAAKYPETKFVKINAEKA-FLVNYLDIKVLPT   79 (113)
T ss_pred             CceEEEEcH-HHHHHHHHcc-CCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEEchhh-HHHHhcCCCcCCE
Confidence            356777766 7888777532 124899999999999999999999999999999999999999999 9999999999999


Q ss_pred             EEEEeCCeEEEEEeCC
Q 032502          103 FFFLKDGQQVDKLVGA  118 (139)
Q Consensus       103 ~~~~~~g~~~~~~~g~  118 (139)
                      +++|++|+.+.++.|.
T Consensus        80 ~~~f~~G~~v~~~~G~   95 (113)
T cd02957          80 LLVYKNGELIDNIVGF   95 (113)
T ss_pred             EEEEECCEEEEEEecH
Confidence            9999999999998875

Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.89  E-value=1.6e-22  Score=138.64  Aligned_cols=106  Identities=25%  Similarity=0.558  Sum_probs=94.6

Q ss_pred             eEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCC-cEEEEEeCCcchhhhhhCCCcceeEEE
Q 032502           26 VSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVDELVEFSTSWDIKATPTFF  104 (139)
Q Consensus        26 ~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~-v~~~~vd~~~~~~~~~~~~v~~~Pt~~  104 (139)
                      +.++ +..+|++.+... ...+||||+||+|||++|+...|.|+++...|.+ +.++.||+|.++.++.+|||+++||++
T Consensus        25 I~dv-T~anfe~~V~~~-S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~vAaqfgiqsIPtV~  102 (304)
T COG3118          25 IKDV-TEANFEQEVIQS-SREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPMVAAQFGVQSIPTVY  102 (304)
T ss_pred             ceec-hHhHHHHHHHHH-ccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcchhHHHHhCcCcCCeEE
Confidence            4554 566677777655 3456999999999999999999999999999986 999999999999999999999999999


Q ss_pred             EEeCCeEEEEEeCC-ChHHHHHHHHHHhhc
Q 032502          105 FLKDGQQVDKLVGA-NKPELQKKVAAAVDS  133 (139)
Q Consensus       105 ~~~~g~~~~~~~g~-~~~~l~~~i~~~~~~  133 (139)
                      .|++|+++.-+.|. ..+.+..||++++..
T Consensus       103 af~dGqpVdgF~G~qPesqlr~~ld~~~~~  132 (304)
T COG3118         103 AFKDGQPVDGFQGAQPESQLRQFLDKVLPA  132 (304)
T ss_pred             EeeCCcCccccCCCCcHHHHHHHHHHhcCh
Confidence            99999999999999 777999999998765

>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes

Probab=99.89  E-value=8.7e-22  Score=117.45  Aligned_cols=94  Identities=35%  Similarity=0.778  Sum_probs=83.2

Q ss_pred             hhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHh-CCCcEEEEEeCCcchhhhhhCCCcceeEEEEEeCCe
Q 032502           32 KDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEK-YPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQ  110 (139)
Q Consensus        32 ~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~-~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~  110 (139)
                      .+++++.+...  .+++++|+||++||+.|+.+.+.|+++.++ .+++.++.+|.+++++++++|++.++||+++|++|+
T Consensus         2 ~~~~~~~~~~~--~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~   79 (97)
T cd02984           2 EEEFEELLKSD--ASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPEISEKFEITAVPTFVFFRNGT   79 (97)
T ss_pred             HHHHHHHHhhC--CCCEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCHHHHHhcCCccccEEEEEECCE
Confidence            45666666533  269999999999999999999999999999 557999999999999999999999999999999999


Q ss_pred             EEEEEeCCChHHHHHHH
Q 032502          111 QVDKLVGANKPELQKKV  127 (139)
Q Consensus       111 ~~~~~~g~~~~~l~~~i  127 (139)
                      ++.+..|...++|.+.|
T Consensus        80 ~~~~~~g~~~~~l~~~~   96 (97)
T cd02984          80 IVDRVSGADPKELAKKV   96 (97)
T ss_pred             EEEEEeCCCHHHHHHhh
Confidence            99999999888887765

PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.

>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1

Probab=99.88  E-value=2.3e-21  Score=116.94  Aligned_cols=97  Identities=22%  Similarity=0.358  Sum_probs=82.7

Q ss_pred             hhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCC-cEEEEEeCCcchhhhhhCCCcceeEEEEEeCCe
Q 032502           32 KDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQ  110 (139)
Q Consensus        32 ~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~-v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~  110 (139)
                      .+++++.+..+  ++++|||.|+++||++|+.+.|.|+++++++++ +.|+.||.|+.+++++.|+|...||+++|++|+
T Consensus         2 ~~~~d~~i~~~--~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~dva~~y~I~amPtfvffkngk   79 (114)
T cd02986           2 KKEVDQAIKST--AEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKVPVYTQYFDISYIPSTIFFFNGQ   79 (114)
T ss_pred             HHHHHHHHHhc--CCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccccHHHHHhcCceeCcEEEEEECCc
Confidence            34566666544  689999999999999999999999999999998 999999999999999999999999999999998


Q ss_pred             EEEEEeCC-----------ChHHHHHHHHHH
Q 032502          111 QVDKLVGA-----------NKPELQKKVAAA  130 (139)
Q Consensus       111 ~~~~~~g~-----------~~~~l~~~i~~~  130 (139)
                      -+....|.           +.+++.+.++.+
T Consensus        80 h~~~d~gt~~~~k~~~~~~~k~~~idi~e~~  110 (114)
T cd02986          80 HMKVDYGSPDHTKFVGSFKTKQDFIDLIEVI  110 (114)
T ss_pred             EEEEecCCCCCcEEEEEcCchhHHHHHHHHH
Confidence            87654432           557777776654

Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.

>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus

Probab=99.87  E-value=3.2e-21  Score=122.49  Aligned_cols=92  Identities=27%  Similarity=0.574  Sum_probs=82.2

Q ss_pred             hhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCC-cEEEEEeCCcc--hhhhhhCCCcceeEEEEE-eCCeEEEEEeCC
Q 032502           43 SKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVDEL--VEFSTSWDIKATPTFFFL-KDGQQVDKLVGA  118 (139)
Q Consensus        43 ~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~-v~~~~vd~~~~--~~~~~~~~v~~~Pt~~~~-~~g~~~~~~~g~  118 (139)
                      ..+++++||+||++||++|+.+.|.+.++++.+.+ +.|+.+|++..  ..++++|+|.++||+++| ++|+++.++.|.
T Consensus        17 ~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~~G~~v~~~~G~   96 (142)
T cd02950          17 LSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDREGNEEGQSIGL   96 (142)
T ss_pred             HhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECCCCCEEEEEeCC
Confidence            36789999999999999999999999999999864 78888888754  578899999999999999 689999999999


Q ss_pred             -ChHHHHHHHHHHhhcc
Q 032502          119 -NKPELQKKVAAAVDSV  134 (139)
Q Consensus       119 -~~~~l~~~i~~~~~~~  134 (139)
                       ..++|.++|+++++..
T Consensus        97 ~~~~~l~~~l~~l~~~~  113 (142)
T cd02950          97 QPKQVLAQNLDALVAGE  113 (142)
T ss_pred             CCHHHHHHHHHHHHcCC
Confidence             7899999999988654

It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.

>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO

Probab=99.87  E-value=2.4e-21  Score=116.84  Aligned_cols=91  Identities=18%  Similarity=0.279  Sum_probs=81.4

Q ss_pred             chhHHHHHHHHHhhCCCEEEEEEeCCC--ChhhhhhhHhHHHHHHhCCC-cEEEEEeCCcchhhhhhCCCcceeEEEEEe
Q 032502           31 TKDIWDQKMSEASKEGKIVIANFSATW--CGPCRMIAPFFSELSEKYPS-LMFLLVDVDELVEFSTSWDIKATPTFFFLK  107 (139)
Q Consensus        31 ~~~~~~~~~~~~~~~~k~vlv~f~~~~--C~~C~~~~~~l~~~~~~~~~-v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~  107 (139)
                      +.++|+..+    ..+.+++|.||++|  |+.|+.+.|.|.++++++++ +.|+.+|++++++++.+|+|.++||+++|+
T Consensus        16 ~~~~~~~~~----~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~~la~~f~V~sIPTli~fk   91 (111)
T cd02965          16 DAATLDDWL----AAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQALAARFGVLRTPALLFFR   91 (111)
T ss_pred             ccccHHHHH----hCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCHHHHHHcCCCcCCEEEEEE
Confidence            556666545    56789999999997  99999999999999999987 889999999999999999999999999999


Q ss_pred             CCeEEEEEeCC-ChHHHHH
Q 032502          108 DGQQVDKLVGA-NKPELQK  125 (139)
Q Consensus       108 ~g~~~~~~~g~-~~~~l~~  125 (139)
                      +|+++.+..|. +.+++..
T Consensus        92 dGk~v~~~~G~~~~~e~~~  110 (111)
T cd02965          92 DGRYVGVLAGIRDWDEYVA  110 (111)
T ss_pred             CCEEEEEEeCccCHHHHhh
Confidence            99999999998 7777653

They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.

>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions

Probab=99.87  E-value=5.6e-21  Score=125.09  Aligned_cols=95  Identities=16%  Similarity=0.287  Sum_probs=84.5

Q ss_pred             CCCceEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhhhhhCCCccee
Q 032502           22 AGGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATP  101 (139)
Q Consensus        22 ~~~~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P  101 (139)
                      ..+.+.++...++|...+... .++.+|||+||++||+.|+.+.|.|.+++.+|+.++|+.||+++. .++.+|+|.++|
T Consensus        60 ~~g~v~ei~~~~~f~~~v~~~-~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d~~-~l~~~f~v~~vP  137 (175)
T cd02987          60 RFGKVYELDSGEQFLDAIDKE-GKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYPAVKFCKIRASAT-GASDEFDTDALP  137 (175)
T ss_pred             CCCeEEEcCCHHHHHHHHHhc-CCCcEEEEEEECCCCchHHHHHHHHHHHHHHCCCeEEEEEeccch-hhHHhCCCCCCC
Confidence            467888888878888887533 234599999999999999999999999999999999999999987 899999999999


Q ss_pred             EEEEEeCCeEEEEEeCC
Q 032502          102 TFFFLKDGQQVDKLVGA  118 (139)
Q Consensus       102 t~~~~~~g~~~~~~~g~  118 (139)
                      |+++|++|+.+.++.|.
T Consensus       138 Tlllyk~G~~v~~~vG~  154 (175)
T cd02987         138 ALLVYKGGELIGNFVRV  154 (175)
T ss_pred             EEEEEECCEEEEEEech
Confidence            99999999999988765

It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.

>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention

Probab=99.87  E-value=3e-21  Score=117.41  Aligned_cols=93  Identities=26%  Similarity=0.495  Sum_probs=79.3

Q ss_pred             chhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhC----C---CcEEEEEeCCcchhhhhhCCCcceeEE
Q 032502           31 TKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKY----P---SLMFLLVDVDELVEFSTSWDIKATPTF  103 (139)
Q Consensus        31 ~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~----~---~v~~~~vd~~~~~~~~~~~~v~~~Pt~  103 (139)
                      +.++|++.+    .++++++|+||++||++|+.+.|.++++++.+    +   .+.|+.+|+++++.++++|+|.++||+
T Consensus         7 ~~~~f~~~i----~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Ptl   82 (108)
T cd02996           7 TSGNIDDIL----QSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRINKYPTL   82 (108)
T ss_pred             CHhhHHHHH----hcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCCCcCCEE
Confidence            567787765    45789999999999999999999999888764    2   388999999999999999999999999


Q ss_pred             EEEeCCeE-EEEEeCC-ChHHHHHHH
Q 032502          104 FFLKDGQQ-VDKLVGA-NKPELQKKV  127 (139)
Q Consensus       104 ~~~~~g~~-~~~~~g~-~~~~l~~~i  127 (139)
                      ++|++|++ ...+.|. +.+.|..+|
T Consensus        83 ~~~~~g~~~~~~~~g~~~~~~l~~fi  108 (108)
T cd02996          83 KLFRNGMMMKREYRGQRSVEALAEFV  108 (108)
T ss_pred             EEEeCCcCcceecCCCCCHHHHHhhC
Confidence            99999984 4666777 888887764

It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.

>PTZ00443 Thioredoxin domain-containing protein; Provisional

Probab=99.87  E-value=1.3e-20  Score=127.23  Aligned_cols=110  Identities=16%  Similarity=0.356  Sum_probs=94.3

Q ss_pred             ceEEeechhHHHHHHHHHh-hCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCC-cEEEEEeCCcchhhhhhCCCcceeE
Q 032502           25 NVSLVTTKDIWDQKMSEAS-KEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVDELVEFSTSWDIKATPT  102 (139)
Q Consensus        25 ~~~~i~~~~~~~~~~~~~~-~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~-v~~~~vd~~~~~~~~~~~~v~~~Pt  102 (139)
                      .+..+ +.++|++.+.... ..+++++|+||++||++|+.+.|.++++++++++ +.+..+|+++++.++++|+|.++||
T Consensus        31 ~Vv~L-t~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~~~l~~~~~I~~~PT  109 (224)
T PTZ00443         31 ALVLL-NDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRALNLAKRFAIKGYPT  109 (224)
T ss_pred             CcEEC-CHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCcccHHHHHHcCCCcCCE
Confidence            34444 6778887765321 2468999999999999999999999999999985 8899999999999999999999999


Q ss_pred             EEEEeCCeEEEEEeCC-ChHHHHHHHHHHhhccC
Q 032502          103 FFFLKDGQQVDKLVGA-NKPELQKKVAAAVDSVV  135 (139)
Q Consensus       103 ~~~~~~g~~~~~~~g~-~~~~l~~~i~~~~~~~~  135 (139)
                      +++|++|+.+....|. +.++|.+++.+......
T Consensus       110 l~~f~~G~~v~~~~G~~s~e~L~~fi~~~~~~~~  143 (224)
T PTZ00443        110 LLLFDKGKMYQYEGGDRSTEKLAAFALGDFKKAL  143 (224)
T ss_pred             EEEEECCEEEEeeCCCCCHHHHHHHHHHHHHhhc
Confidence            9999999999888886 99999999998876653

>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.87  E-value=2.9e-21  Score=129.06  Aligned_cols=111  Identities=40%  Similarity=0.785  Sum_probs=102.6

Q ss_pred             ceEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhhhhhCCCcceeEEE
Q 032502           25 NVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFF  104 (139)
Q Consensus        25 ~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~  104 (139)
                      +|..+.+..+|...+..+  ..|.++|.|++.||++|++..|.+.+++++|++..|..||.|+++..+..+||...|||+
T Consensus         2 ~Vi~v~~d~df~~~ls~a--g~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~aVFlkVdVd~c~~taa~~gV~amPTFi   79 (288)
T KOG0908|consen    2 PVIVVNSDSDFQRELSAA--GGKLVVVDFTASWCGPCKRIAPIFSDLANKYPGAVFLKVDVDECRGTAATNGVNAMPTFI   79 (288)
T ss_pred             CeEEecCcHHHHHhhhcc--CceEEEEEEEecccchHHhhhhHHHHhhhhCcccEEEEEeHHHhhchhhhcCcccCceEE
Confidence            678888999999888644  468999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCeEEEEEeCCChHHHHHHHHHHhhccCCC
Q 032502          105 FLKDGQQVDKLVGANKPELQKKVAAAVDSVVPS  137 (139)
Q Consensus       105 ~~~~g~~~~~~~g~~~~~l~~~i~~~~~~~~~~  137 (139)
                      +|.||..+..+-|.+...|+..+.++.....+.
T Consensus        80 ff~ng~kid~~qGAd~~gLe~kv~~~~stsaa~  112 (288)
T KOG0908|consen   80 FFRNGVKIDQIQGADASGLEEKVAKYASTSAAS  112 (288)
T ss_pred             EEecCeEeeeecCCCHHHHHHHHHHHhccCccc
Confidence            999999999999999999999999988776554

>TIGR01068 thioredoxin thioredoxin

Probab=99.86  E-value=1.2e-20  Score=112.99  Aligned_cols=97  Identities=34%  Similarity=0.761  Sum_probs=85.4

Q ss_pred             hhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCC-CcEEEEEeCCcchhhhhhCCCcceeEEEEEeCCe
Q 032502           32 KDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP-SLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQ  110 (139)
Q Consensus        32 ~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~-~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~  110 (139)
                      .+++.+.+.   ..+++++|+||++||+.|+.+.+.++++.++++ ++.|+.+|++++..++++|++..+|+++++.+|+
T Consensus         3 ~~~~~~~~~---~~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g~   79 (101)
T TIGR01068         3 DANFDETIA---SSDKPVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPDIAAKYGIRSIPTLLLFKNGK   79 (101)
T ss_pred             HHHHHHHHh---hcCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCCcCCEEEEEeCCc
Confidence            455665553   346799999999999999999999999998887 4999999999999999999999999999999999


Q ss_pred             EEEEEeCC-ChHHHHHHHHHHh
Q 032502          111 QVDKLVGA-NKPELQKKVAAAV  131 (139)
Q Consensus       111 ~~~~~~g~-~~~~l~~~i~~~~  131 (139)
                      ......|. +.+.+.++|.+.+
T Consensus        80 ~~~~~~g~~~~~~l~~~l~~~~  101 (101)
T TIGR01068        80 EVDRSVGALPKAALKQLINKNL  101 (101)
T ss_pred             EeeeecCCCCHHHHHHHHHhhC
Confidence            99888888 8899999988753

Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.

>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX

Probab=99.86  E-value=1.2e-20  Score=113.46  Aligned_cols=96  Identities=26%  Similarity=0.484  Sum_probs=81.0

Q ss_pred             eEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCC--CcEEEEEeCCcchhhhhhCCCcceeEE
Q 032502           26 VSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP--SLMFLLVDVDELVEFSTSWDIKATPTF  103 (139)
Q Consensus        26 ~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~~~~~~~~~~v~~~Pt~  103 (139)
                      +..+ +.++|++.+     +++ ++|.||++||++|+.+.|.++++++.+.  ++.+..+|+++++.++++|+|.++||+
T Consensus         3 v~~l-~~~~f~~~~-----~~~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~Pt~   75 (101)
T cd02994           3 VVEL-TDSNWTLVL-----EGE-WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPGLSGRFFVTALPTI   75 (101)
T ss_pred             eEEc-ChhhHHHHh-----CCC-EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHhHHHHcCCcccCEE
Confidence            3444 466777654     244 6899999999999999999999998875  489999999999999999999999999


Q ss_pred             EEEeCCeEEEEEeCC-ChHHHHHHHHH
Q 032502          104 FFLKDGQQVDKLVGA-NKPELQKKVAA  129 (139)
Q Consensus       104 ~~~~~g~~~~~~~g~-~~~~l~~~i~~  129 (139)
                      +++++|++ .++.|. +.++|..+|++
T Consensus        76 ~~~~~g~~-~~~~G~~~~~~l~~~i~~  101 (101)
T cd02994          76 YHAKDGVF-RRYQGPRDKEDLISFIEE  101 (101)
T ss_pred             EEeCCCCE-EEecCCCCHHHHHHHHhC
Confidence            99999985 677788 88888888763

TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.

>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains

Probab=99.86  E-value=8.2e-21  Score=114.13  Aligned_cols=92  Identities=32%  Similarity=0.655  Sum_probs=80.2

Q ss_pred             chhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCC----CcEEEEEeCCcchhhhhhCCCcceeEEEEE
Q 032502           31 TKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP----SLMFLLVDVDELVEFSTSWDIKATPTFFFL  106 (139)
Q Consensus        31 ~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~----~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~  106 (139)
                      +.++|++.+.    + ++++|+||++||++|+.+.|.+.++++++.    .+.++.+|++.+..++++|+|.++||++++
T Consensus         6 ~~~~f~~~~~----~-~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~   80 (102)
T cd03005           6 TEDNFDHHIA----E-GNHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQVRGYPTLLLF   80 (102)
T ss_pred             CHHHHHHHhh----c-CCEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCCCcCCEEEEE
Confidence            4566777763    2 359999999999999999999999988885    489999999999999999999999999999


Q ss_pred             eCCeEEEEEeCC-ChHHHHHHH
Q 032502          107 KDGQQVDKLVGA-NKPELQKKV  127 (139)
Q Consensus       107 ~~g~~~~~~~g~-~~~~l~~~i  127 (139)
                      .+|+.+.++.|. +.+.|.++|
T Consensus        81 ~~g~~~~~~~G~~~~~~l~~~i  102 (102)
T cd03005          81 KDGEKVDKYKGTRDLDSLKEFV  102 (102)
T ss_pred             eCCCeeeEeeCCCCHHHHHhhC
Confidence            999988889898 888777664

Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.

>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains

Probab=99.86  E-value=2.5e-20  Score=111.27  Aligned_cols=84  Identities=26%  Similarity=0.610  Sum_probs=78.2

Q ss_pred             hCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCC-CcEEEEEeCCcchhhhhhCCCcceeEEEEEeCCeEEEEEeCC-ChH
Q 032502           44 KEGKIVIANFSATWCGPCRMIAPFFSELSEKYP-SLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGA-NKP  121 (139)
Q Consensus        44 ~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~-~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~  121 (139)
                      ..+++++++||++||+.|+.+.+.++++.++++ ++.++.+|.++++++..+|++.++|+++++++|+++.+..|. +.+
T Consensus        11 ~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~l~~~~~v~~vPt~~i~~~g~~v~~~~g~~~~~   90 (97)
T cd02949          11 ESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQEIAEAAGIMGTPTVQFFKDKELVKEISGVKMKS   90 (97)
T ss_pred             hCCCeEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHHHHHCCCeeccEEEEEECCeEEEEEeCCccHH
Confidence            468999999999999999999999999999987 499999999999999999999999999999999999999998 888


Q ss_pred             HHHHHH
Q 032502          122 ELQKKV  127 (139)
Q Consensus       122 ~l~~~i  127 (139)
                      +|.++|
T Consensus        91 ~~~~~l   96 (97)
T cd02949          91 EYREFI   96 (97)
T ss_pred             HHHHhh
Confidence            888776

The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.

>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding

Probab=99.85  E-value=2.7e-20  Score=114.00  Aligned_cols=89  Identities=25%  Similarity=0.331  Sum_probs=79.5

Q ss_pred             hCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhhhhhCCCcceeEEEEEeCCeEEE--EEeCC-Ch
Q 032502           44 KEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVD--KLVGA-NK  120 (139)
Q Consensus        44 ~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~--~~~g~-~~  120 (139)
                      .+++.++|+||++||++|+.+.+.+++++..++.+.|+.+|.+++++++.+|+|.++||++++++|+...  ++.|. +.
T Consensus        20 ~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d~~~~l~~~~~v~~vPt~~i~~~g~~~~~~~~~G~~~~   99 (113)
T cd02975          20 KNPVDLVVFSSKEGCQYCEVTKQLLEELSELSDKLKLEIYDFDEDKEKAEKYGVERVPTTIFLQDGGKDGGIRYYGLPAG   99 (113)
T ss_pred             CCCeEEEEEeCCCCCCChHHHHHHHHHHHHhcCceEEEEEeCCcCHHHHHHcCCCcCCEEEEEeCCeecceEEEEecCch
Confidence            5677889999999999999999999999998877999999999999999999999999999998765544  57788 88


Q ss_pred             HHHHHHHHHHhh
Q 032502          121 PELQKKVAAAVD  132 (139)
Q Consensus       121 ~~l~~~i~~~~~  132 (139)
                      .+|..+|..++.
T Consensus       100 ~el~~~i~~i~~  111 (113)
T cd02975         100 YEFASLIEDIVR  111 (113)
T ss_pred             HHHHHHHHHHHh
Confidence            899999998875

PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.

>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library

Probab=99.85  E-value=4e-20  Score=118.15  Aligned_cols=91  Identities=22%  Similarity=0.460  Sum_probs=78.3

Q ss_pred             CceEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCC--CcEEEEEeCCcchhhhhhCCCcc--
Q 032502           24 GNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP--SLMFLLVDVDELVEFSTSWDIKA--   99 (139)
Q Consensus        24 ~~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~~~~~~~~~~v~~--   99 (139)
                      ..+.++ +.++|++.+..  ..+++++|+||++||++|+.+.|.++++++++.  ++.|+.||++++++++.+|+|.+  
T Consensus        28 ~~v~~l-~~~~f~~~l~~--~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~la~~~~V~~~~  104 (152)
T cd02962          28 EHIKYF-TPKTLEEELER--DKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPNVAEKFRVSTSP  104 (152)
T ss_pred             CccEEc-CHHHHHHHHHh--cCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHHHHHHcCceecC
Confidence            344444 45677776642  246799999999999999999999999999986  49999999999999999999988  


Q ss_pred             ----eeEEEEEeCCeEEEEEeC
Q 032502          100 ----TPTFFFLKDGQQVDKLVG  117 (139)
Q Consensus       100 ----~Pt~~~~~~g~~~~~~~g  117 (139)
                          +||+++|++|+.+.+..|
T Consensus       105 ~v~~~PT~ilf~~Gk~v~r~~G  126 (152)
T cd02962         105 LSKQLPTIILFQGGKEVARRPY  126 (152)
T ss_pred             CcCCCCEEEEEECCEEEEEEec
Confidence                999999999999999987

It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.

>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein

Probab=99.85  E-value=1.9e-20  Score=113.92  Aligned_cols=94  Identities=19%  Similarity=0.430  Sum_probs=80.7

Q ss_pred             chhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCC-cEEEEEeCCc--chhhhhhCCCcceeEEEEEe
Q 032502           31 TKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVDE--LVEFSTSWDIKATPTFFFLK  107 (139)
Q Consensus        31 ~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~-v~~~~vd~~~--~~~~~~~~~v~~~Pt~~~~~  107 (139)
                      +.+++++.+.   .++++++|+||++||++|+.+.|.+.++++.+.+ +.++.+|++.  +..++++|+|.++||+++|+
T Consensus         6 ~~~~~~~~i~---~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~Pt~~~~~   82 (109)
T cd03002           6 TPKNFDKVVH---NTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNKPLCGKYGVQGFPTLKVFR   82 (109)
T ss_pred             chhhHHHHHh---cCCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccccHHHHHHcCCCcCCEEEEEe
Confidence            4567777774   4578999999999999999999999999999875 8899999998  88999999999999999997


Q ss_pred             CCe-----EEEEEeCC-ChHHHHHHH
Q 032502          108 DGQ-----QVDKLVGA-NKPELQKKV  127 (139)
Q Consensus       108 ~g~-----~~~~~~g~-~~~~l~~~i  127 (139)
                      +|+     ....+.|. +.++|..||
T Consensus        83 ~~~~~~~~~~~~~~G~~~~~~l~~fi  108 (109)
T cd03002          83 PPKKASKHAVEDYNGERSAKAIVDFV  108 (109)
T ss_pred             CCCcccccccccccCccCHHHHHHHh
Confidence            775     45667777 888888876

MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.

>TIGR01126 pdi_dom protein disulfide-isomerase domain

Probab=99.84  E-value=4e-20  Score=110.96  Aligned_cols=95  Identities=21%  Similarity=0.466  Sum_probs=83.0

Q ss_pred             hhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCC---cEEEEEeCCcchhhhhhCCCcceeEEEEEeC
Q 032502           32 KDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS---LMFLLVDVDELVEFSTSWDIKATPTFFFLKD  108 (139)
Q Consensus        32 ~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~---v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~  108 (139)
                      .++|+..+    .++++++|+||++||+.|+.+.+.++++++.+.+   +.++.+|++++..++++|+|.++|+++++++
T Consensus         3 ~~~~~~~~----~~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~P~~~~~~~   78 (102)
T TIGR01126         3 ASNFDDIV----LSNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDLASRFGVSGFPTIKFFPK   78 (102)
T ss_pred             hhhHHHHh----ccCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHHHHhCCCCcCCEEEEecC
Confidence            45566555    3689999999999999999999999999988873   9999999999999999999999999999977


Q ss_pred             CeEEEEEeCC-ChHHHHHHHHHH
Q 032502          109 GQQVDKLVGA-NKPELQKKVAAA  130 (139)
Q Consensus       109 g~~~~~~~g~-~~~~l~~~i~~~  130 (139)
                      |+....+.|. +.++|..+|++.
T Consensus        79 ~~~~~~~~g~~~~~~l~~~i~~~  101 (102)
T TIGR01126        79 GKKPVDYEGGRDLEAIVEFVNEK  101 (102)
T ss_pred             CCcceeecCCCCHHHHHHHHHhc
Confidence            7756778888 888899998875

This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.

>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD

Probab=99.84  E-value=1.3e-20  Score=113.82  Aligned_cols=86  Identities=21%  Similarity=0.457  Sum_probs=75.3

Q ss_pred             HhhCCCEEEEEEeCCCChhhhhhhHhH---HHHHHhCC-CcEEEEEeCCc----chhhhhhCCCcceeEEEEEe--CCeE
Q 032502           42 ASKEGKIVIANFSATWCGPCRMIAPFF---SELSEKYP-SLMFLLVDVDE----LVEFSTSWDIKATPTFFFLK--DGQQ  111 (139)
Q Consensus        42 ~~~~~k~vlv~f~~~~C~~C~~~~~~l---~~~~~~~~-~v~~~~vd~~~----~~~~~~~~~v~~~Pt~~~~~--~g~~  111 (139)
                      +..++++++|+||++||++|+.+.+.+   .++.+.+. ++.++.+|+++    ...++++|++.++||+++|+  +|+.
T Consensus         7 ~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~~~~~~g~~   86 (104)
T cd02953           7 ALAQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGVFGPPTYLFYGPGGEPE   86 (104)
T ss_pred             HHHcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEEECCCCCCC
Confidence            336789999999999999999999877   57777776 69999999987    57889999999999999996  8999


Q ss_pred             EEEEeCC-ChHHHHHHH
Q 032502          112 VDKLVGA-NKPELQKKV  127 (139)
Q Consensus       112 ~~~~~g~-~~~~l~~~i  127 (139)
                      +.++.|. +.++|..+|
T Consensus        87 ~~~~~G~~~~~~l~~~l  103 (104)
T cd02953          87 PLRLPGFLTADEFLEAL  103 (104)
T ss_pred             CcccccccCHHHHHHHh
Confidence            9999998 888888776

It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.

>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related)

Probab=99.84  E-value=6.3e-20  Score=110.58  Aligned_cols=93  Identities=24%  Similarity=0.515  Sum_probs=80.0

Q ss_pred             chhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCC---CcEEEEEeCCc--chhhhhhCCCcceeEEEE
Q 032502           31 TKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP---SLMFLLVDVDE--LVEFSTSWDIKATPTFFF  105 (139)
Q Consensus        31 ~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~---~v~~~~vd~~~--~~~~~~~~~v~~~Pt~~~  105 (139)
                      +..+++..+    .++++++|+||++||++|+.+.|.+.++++.+.   .+.++.+|++.  +..++.+|+|.++||+++
T Consensus         6 ~~~~~~~~~----~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~Pt~~~   81 (104)
T cd02997           6 TDEDFRKFL----KKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKGFPTFKY   81 (104)
T ss_pred             chHhHHHHH----hhCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCccccEEEE
Confidence            345666655    356799999999999999999999999988875   38888999998  899999999999999999


Q ss_pred             EeCCeEEEEEeCC-ChHHHHHHH
Q 032502          106 LKDGQQVDKLVGA-NKPELQKKV  127 (139)
Q Consensus       106 ~~~g~~~~~~~g~-~~~~l~~~i  127 (139)
                      +++|+.+.++.|. +.+.+.++|
T Consensus        82 ~~~g~~~~~~~g~~~~~~l~~~l  104 (104)
T cd02997          82 FENGKFVEKYEGERTAEDIIEFM  104 (104)
T ss_pred             EeCCCeeEEeCCCCCHHHHHhhC
Confidence            9999988888888 888887764

PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.

>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation

Probab=99.83  E-value=9e-20  Score=113.61  Aligned_cols=97  Identities=20%  Similarity=0.406  Sum_probs=79.8

Q ss_pred             HHHHHHhhCC-CEEEEEEeCCCChhhhhhhHhHH---HHHHhCC-CcEEEEEeCCcc-------------hhhhhhCCCc
Q 032502           37 QKMSEASKEG-KIVIANFSATWCGPCRMIAPFFS---ELSEKYP-SLMFLLVDVDEL-------------VEFSTSWDIK   98 (139)
Q Consensus        37 ~~~~~~~~~~-k~vlv~f~~~~C~~C~~~~~~l~---~~~~~~~-~v~~~~vd~~~~-------------~~~~~~~~v~   98 (139)
                      +.+..+..++ ++++|.||++||++|+.+.+.+.   .+.+.+. ++.++.+|.+..             ..++.+|+|.
T Consensus         4 ~~~~~a~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v~   83 (125)
T cd02951           4 EDLAEAAADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYRVR   83 (125)
T ss_pred             HHHHHHHHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcCCc
Confidence            3445555788 99999999999999999998773   4555543 588889998864             6889999999


Q ss_pred             ceeEEEEE-eC-CeEEEEEeCC-ChHHHHHHHHHHhhc
Q 032502           99 ATPTFFFL-KD-GQQVDKLVGA-NKPELQKKVAAAVDS  133 (139)
Q Consensus        99 ~~Pt~~~~-~~-g~~~~~~~g~-~~~~l~~~i~~~~~~  133 (139)
                      ++||++++ ++ |+++.+..|. +.+.+..+|+.++..
T Consensus        84 ~~Pt~~~~~~~gg~~~~~~~G~~~~~~~~~~l~~~~~~  121 (125)
T cd02951          84 FTPTVIFLDPEGGKEIARLPGYLPPDEFLAYLEYVQEK  121 (125)
T ss_pred             cccEEEEEcCCCCceeEEecCCCCHHHHHHHHHHHHhh
Confidence            99999999 45 6999999998 889999999988654

Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.

>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

Probab=99.83  E-value=1.5e-19  Score=108.76  Aligned_cols=94  Identities=19%  Similarity=0.420  Sum_probs=79.4

Q ss_pred             chhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCC-CcEEEEEeCCcchhhhhhCCCcceeEEEEEeCC
Q 032502           31 TKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP-SLMFLLVDVDELVEFSTSWDIKATPTFFFLKDG  109 (139)
Q Consensus        31 ~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~-~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g  109 (139)
                      +..++++.+.   .++++++|+||++||++|+.+.|.+.++++.++ .+.++.+|++++..++++|+|.++|+++++.+|
T Consensus         6 ~~~~~~~~i~---~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~~~P~~~~~~~~   82 (103)
T cd03001           6 TDSNFDKKVL---NSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQSLAQQYGVRGFPTIKVFGAG   82 (103)
T ss_pred             CHHhHHHHHh---cCCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcchHHHHHHCCCCccCEEEEECCC
Confidence            4566666664   346779999999999999999999999999886 499999999999999999999999999999887


Q ss_pred             -eEEEEEeCC-ChHHHHHHH
Q 032502          110 -QQVDKLVGA-NKPELQKKV  127 (139)
Q Consensus       110 -~~~~~~~g~-~~~~l~~~i  127 (139)
                       .....+.|. +.++|.+|+
T Consensus        83 ~~~~~~~~g~~~~~~l~~~~  102 (103)
T cd03001          83 KNSPQDYQGGRTAKAIVSAA  102 (103)
T ss_pred             CcceeecCCCCCHHHHHHHh
Confidence             444556676 888887775

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.

>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative

Probab=99.83  E-value=2.2e-19  Score=111.19  Aligned_cols=93  Identities=22%  Similarity=0.284  Sum_probs=74.8

Q ss_pred             chhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcch-----------hhhhhCC---
Q 032502           31 TKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELV-----------EFSTSWD---   96 (139)
Q Consensus        31 ~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~-----------~~~~~~~---   96 (139)
                      +.+++.+.+    .+++.++|+|+++|||+|+.+.|.|.++.++. ++.++.+|.+.+.           ++.++|+   
T Consensus        12 t~~~~~~~i----~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~-~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~   86 (122)
T TIGR01295        12 TVVRALEAL----DKKETATFFIGRKTCPYCRKFSGTLSGVVAQT-KAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIPT   86 (122)
T ss_pred             CHHHHHHHH----HcCCcEEEEEECCCChhHHHHhHHHHHHHHhc-CCcEEEEECCCccCcCcccHHHHHHHHHHcCCcc
Confidence            344555555    56788999999999999999999999999984 5778888888543           4456655   


Q ss_pred             -CcceeEEEEEeCCeEEEEEeCC--ChHHHHHHHH
Q 032502           97 -IKATPTFFFLKDGQQVDKLVGA--NKPELQKKVA  128 (139)
Q Consensus        97 -v~~~Pt~~~~~~g~~~~~~~g~--~~~~l~~~i~  128 (139)
                       +.++||++++++|+.+.+..|.  +.++|.+++.
T Consensus        87 ~i~~~PT~v~~k~Gk~v~~~~G~~~~~~~l~~~~~  121 (122)
T TIGR01295        87 SFMGTPTFVHITDGKQVSVRCGSSTTAQELQDIAA  121 (122)
T ss_pred             cCCCCCEEEEEeCCeEEEEEeCCCCCHHHHHHHhh
Confidence             5569999999999999999994  7888888763

This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.

>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus

Probab=99.83  E-value=1.1e-19  Score=109.73  Aligned_cols=86  Identities=19%  Similarity=0.456  Sum_probs=75.1

Q ss_pred             hCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCC----CcEEEEEeCCcchhhhhhCCCcceeEEEEEeCCeEEEEEeCC-
Q 032502           44 KEGKIVIANFSATWCGPCRMIAPFFSELSEKYP----SLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGA-  118 (139)
Q Consensus        44 ~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~----~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-  118 (139)
                      .++++++|.||++||++|+.+.|.++++++.+.    ++.+..+|++..+.++++|+|.++||+++|++|.. ..+.|. 
T Consensus        13 ~~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I~~~Pt~~l~~~~~~-~~~~G~~   91 (104)
T cd03000          13 RKEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGVRGYPTIKLLKGDLA-YNYRGPR   91 (104)
T ss_pred             ccCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCCccccEEEEEcCCCc-eeecCCC
Confidence            346899999999999999999999999998873    38889999999999999999999999999977754 557777 


Q ss_pred             ChHHHHHHHHHH
Q 032502          119 NKPELQKKVAAA  130 (139)
Q Consensus       119 ~~~~l~~~i~~~  130 (139)
                      +.+.|.+++.+.
T Consensus        92 ~~~~l~~~~~~~  103 (104)
T cd03000          92 TKDDIVEFANRV  103 (104)
T ss_pred             CHHHHHHHHHhh
Confidence            888898888764

The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.

>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis

Probab=99.82  E-value=5.6e-19  Score=117.09  Aligned_cols=92  Identities=22%  Similarity=0.394  Sum_probs=78.6

Q ss_pred             CCCceEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhhhhhCCCccee
Q 032502           22 AGGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATP  101 (139)
Q Consensus        22 ~~~~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P  101 (139)
                      ..+.+..+ +..+|...+..+ .++.+|||+||++||+.|+.+.+.|.+++.+|+.++|+.||.+..   ..+|++.++|
T Consensus        80 ~~G~v~ei-s~~~f~~eV~~a-s~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~~vkFvkI~ad~~---~~~~~i~~lP  154 (192)
T cd02988          80 KFGEVYEI-SKPDYVREVTEA-SKDTWVVVHLYKDGIPLCRLLNQHLSELARKFPDTKFVKIISTQC---IPNYPDKNLP  154 (192)
T ss_pred             CCCeEEEe-CHHHHHHHHHhc-CCCCEEEEEEECCCCchHHHHHHHHHHHHHHCCCCEEEEEEhHHh---HhhCCCCCCC
Confidence            45777887 456777666533 234699999999999999999999999999999999999999864   5799999999


Q ss_pred             EEEEEeCCeEEEEEeCC
Q 032502          102 TFFFLKDGQQVDKLVGA  118 (139)
Q Consensus       102 t~~~~~~g~~~~~~~g~  118 (139)
                      |+++|++|+.+.++.|.
T Consensus       155 Tlliyk~G~~v~~ivG~  171 (192)
T cd02988         155 TILVYRNGDIVKQFIGL  171 (192)
T ss_pred             EEEEEECCEEEEEEeCc
Confidence            99999999999998875

It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.

>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains

Probab=99.81  E-value=7e-19  Score=103.15  Aligned_cols=84  Identities=46%  Similarity=0.939  Sum_probs=77.2

Q ss_pred             hCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhhhhhCCCcceeEEEEEeCCeEEEEEeCC-ChHH
Q 032502           44 KEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGA-NKPE  122 (139)
Q Consensus        44 ~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~  122 (139)
                      ..+++++|+||++||++|+.+.+.++++.+..+++.++.+|++.+..++..|++.++|+++++.+|+.+..+.|. +.+.
T Consensus         8 ~~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~~~~~~~g~~~~~~   87 (93)
T cd02947           8 KSAKPVVVDFWAPWCGPCKAIAPVLEELAEEYPKVKFVKVDVDENPELAEEYGVRSIPTFLFFKNGKEVDRVVGADPKEE   87 (93)
T ss_pred             hcCCcEEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEECCCChhHHHhcCcccccEEEEEECCEEEEEEecCCCHHH
Confidence            345899999999999999999999999998877899999999999999999999999999999999999999998 7788


Q ss_pred             HHHHH
Q 032502          123 LQKKV  127 (139)
Q Consensus       123 l~~~i  127 (139)
                      |.++|
T Consensus        88 l~~~i   92 (93)
T cd02947          88 LEEFL   92 (93)
T ss_pred             HHHHh
Confidence            87765

Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio

>PTZ00062 glutaredoxin; Provisional

Probab=99.81  E-value=8.9e-19  Score=116.67  Aligned_cols=93  Identities=17%  Similarity=0.226  Sum_probs=80.7

Q ss_pred             echhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhhhhhCCCcceeEEEEEeCC
Q 032502           30 TTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDG  109 (139)
Q Consensus        30 ~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g  109 (139)
                      .+.+++.+.+.   ...+.+|++||++||+.|+.+.+.+.+++++|+++.|+.||.+        |+|.++|||++|++|
T Consensus         4 ~~~ee~~~~i~---~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~~~F~~V~~d--------~~V~~vPtfv~~~~g   72 (204)
T PTZ00062          4 IKKEEKDKLIE---SNTGKLVLYVKSSKEPEYEQLMDVCNALVEDFPSLEFYVVNLA--------DANNEYGVFEFYQNS   72 (204)
T ss_pred             CCHHHHHHHHh---cCCCcEEEEEeCCCCcchHHHHHHHHHHHHHCCCcEEEEEccc--------cCcccceEEEEEECC
Confidence            45566666552   1236789999999999999999999999999999999999987        999999999999999


Q ss_pred             eEEEEEeCCChHHHHHHHHHHhhc
Q 032502          110 QQVDKLVGANKPELQKKVAAAVDS  133 (139)
Q Consensus       110 ~~~~~~~g~~~~~l~~~i~~~~~~  133 (139)
                      +.+.++.|.+..+|...+..+.+.
T Consensus        73 ~~i~r~~G~~~~~~~~~~~~~~~~   96 (204)
T PTZ00062         73 QLINSLEGCNTSTLVSFIRGWAQK   96 (204)
T ss_pred             EEEeeeeCCCHHHHHHHHHHHcCC
Confidence            999999999999999888876543

>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1

Probab=99.80  E-value=6.5e-19  Score=106.08  Aligned_cols=93  Identities=26%  Similarity=0.530  Sum_probs=77.9

Q ss_pred             chhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCC---cEEEEEeCCcchhhhhhCCCcceeEEEEEe
Q 032502           31 TKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS---LMFLLVDVDELVEFSTSWDIKATPTFFFLK  107 (139)
Q Consensus        31 ~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~---v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~  107 (139)
                      +.++|++.+.   .++++++|+||++||++|+.+.|.+.++++.+.+   +.++.+|++++ +++..+++.++||+++|.
T Consensus         6 ~~~~f~~~i~---~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-~~~~~~~~~~~Pt~~~~~   81 (104)
T cd02995           6 VGKNFDEVVL---DSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN-DVPSEFVVDGFPTILFFP   81 (104)
T ss_pred             chhhhHHHHh---CCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch-hhhhhccCCCCCEEEEEc
Confidence            4667777664   3468999999999999999999999999998764   89999999987 577889999999999998


Q ss_pred             CCe--EEEEEeCC-ChHHHHHHH
Q 032502          108 DGQ--QVDKLVGA-NKPELQKKV  127 (139)
Q Consensus       108 ~g~--~~~~~~g~-~~~~l~~~i  127 (139)
                      +|+  ...++.|. +.+.|.+||
T Consensus        82 ~~~~~~~~~~~g~~~~~~l~~fi  104 (104)
T cd02995          82 AGDKSNPIKYEGDRTLEDLIKFI  104 (104)
T ss_pred             CCCcCCceEccCCcCHHHHHhhC
Confidence            877  55667777 888877764

PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu

>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=99.80  E-value=8.3e-19  Score=104.58  Aligned_cols=92  Identities=24%  Similarity=0.526  Sum_probs=78.2

Q ss_pred             hhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhC---CCcEEEEEeCCcchhhhhhCCCcceeEEEEEeC
Q 032502           32 KDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKY---PSLMFLLVDVDELVEFSTSWDIKATPTFFFLKD  108 (139)
Q Consensus        32 ~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~---~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~  108 (139)
                      .+++.+.+    .++++++|+||++||++|+.+.+.+.++++.+   .++.|+.+|++++..++++|+|.++|+++++.+
T Consensus         5 ~~~~~~~i----~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~   80 (101)
T cd02961           5 DDNFDELV----KDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGVRGYPTIKLFPN   80 (101)
T ss_pred             HHHHHHHH----hCCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHHHHHhCCCCCCCEEEEEcC
Confidence            34555555    45569999999999999999999999999888   369999999999999999999999999999976


Q ss_pred             C-eEEEEEeCC-ChHHHHHHH
Q 032502          109 G-QQVDKLVGA-NKPELQKKV  127 (139)
Q Consensus       109 g-~~~~~~~g~-~~~~l~~~i  127 (139)
                      + +...++.|. +.+++.+++
T Consensus        81 ~~~~~~~~~g~~~~~~i~~~~  101 (101)
T cd02961          81 GSKEPVKYEGPRTLESLVEFI  101 (101)
T ss_pred             CCcccccCCCCcCHHHHHhhC
Confidence            6 777777777 777777653

Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies

>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases

Probab=99.80  E-value=1.4e-18  Score=105.79  Aligned_cols=96  Identities=20%  Similarity=0.350  Sum_probs=76.2

Q ss_pred             chhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCC--CcEEEEEeCCc-chhhhh-hCCCcceeEEEEE
Q 032502           31 TKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP--SLMFLLVDVDE-LVEFST-SWDIKATPTFFFL  106 (139)
Q Consensus        31 ~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~-~~~~~~-~~~v~~~Pt~~~~  106 (139)
                      +.++++..+.. ..++++++|.||++||++|+.+.|.+.++++.+.  ++.+..+|++. ...++. .|++.++||+++|
T Consensus         7 ~~~~~~~~~~~-~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~v~~~Pti~~f   85 (109)
T cd02993           7 SRAEIEALAKG-ERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQLKSFPTILFF   85 (109)
T ss_pred             cHHHHHHHHhh-hhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhhHHhhcCCCcCCEEEEE
Confidence            44566655532 3568999999999999999999999999999886  38899999997 567776 5999999999999


Q ss_pred             eC-CeEEEEEeC-C-ChHHHHHHH
Q 032502          107 KD-GQQVDKLVG-A-NKPELQKKV  127 (139)
Q Consensus       107 ~~-g~~~~~~~g-~-~~~~l~~~i  127 (139)
                      .+ ++....+.| . +.+.|..||
T Consensus        86 ~~~~~~~~~y~g~~~~~~~l~~f~  109 (109)
T cd02993          86 PKNSRQPIKYPSEQRDVDSLLMFV  109 (109)
T ss_pred             cCCCCCceeccCCCCCHHHHHhhC
Confidence            54 455666777 3 777777654

APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red

>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5

Probab=99.79  E-value=7.5e-19  Score=105.93  Aligned_cols=94  Identities=28%  Similarity=0.559  Sum_probs=78.2

Q ss_pred             chhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCC---CcEEEEEeCCc-chhhhhhCCCcceeEEEEE
Q 032502           31 TKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP---SLMFLLVDVDE-LVEFSTSWDIKATPTFFFL  106 (139)
Q Consensus        31 ~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~---~v~~~~vd~~~-~~~~~~~~~v~~~Pt~~~~  106 (139)
                      +.+++++.+.   .++++++++||++||++|+.+.+.+.++++.+.   ++.++.+|++. ++.++++|+|.++|++++|
T Consensus         6 ~~~~~~~~~~---~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i~~~P~~~~~   82 (105)
T cd02998           6 TDSNFDKVVG---DDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVSGFPTLKFF   82 (105)
T ss_pred             chhcHHHHhc---CCCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCCCCcCEEEEE
Confidence            4456666542   346799999999999999999999999999875   49999999999 9999999999999999999


Q ss_pred             eCC-eEEEEEeCC-ChHHHHHHH
Q 032502          107 KDG-QQVDKLVGA-NKPELQKKV  127 (139)
Q Consensus       107 ~~g-~~~~~~~g~-~~~~l~~~i  127 (139)
                      .+| +....+.|. +.++|.++|
T Consensus        83 ~~~~~~~~~~~g~~~~~~l~~~i  105 (105)
T cd02998          83 PKGSTEPVKYEGGRDLEDLVKFV  105 (105)
T ss_pred             eCCCCCccccCCccCHHHHHhhC
Confidence            655 566667776 888887764

The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER

>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional

Probab=99.76  E-value=6.5e-18  Score=125.72  Aligned_cols=104  Identities=18%  Similarity=0.251  Sum_probs=82.7

Q ss_pred             CceEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCC--CcEEEEEeC----------------
Q 032502           24 GNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP--SLMFLLVDV----------------   85 (139)
Q Consensus        24 ~~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~--~v~~~~vd~----------------   85 (139)
                      ..+|++...+.-...+.+.  ++|++||+||++||++|+.+.|.|++++++++  ++.++.|..                
T Consensus        36 ~~lP~f~l~D~dG~~v~ls--kGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~  113 (521)
T PRK14018         36 HTLSTLKTADNRPASVYLK--KDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWY  113 (521)
T ss_pred             CCCCCeEeecCCCceeecc--CCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHH
Confidence            4556665544444444433  78999999999999999999999999999886  577766543                


Q ss_pred             ------------CcchhhhhhCCCcceeEEEEE-eCCeEEEEEeCC-ChHHHHHHHHH
Q 032502           86 ------------DELVEFSTSWDIKATPTFFFL-KDGQQVDKLVGA-NKPELQKKVAA  129 (139)
Q Consensus        86 ------------~~~~~~~~~~~v~~~Pt~~~~-~~g~~~~~~~g~-~~~~l~~~i~~  129 (139)
                                  |.+..+.+.|+|.++|+++++ ++|+++.+..|. +.++|.++|+.
T Consensus       114 ~~~~y~~~pV~~D~~~~lak~fgV~giPTt~IIDkdGkIV~~~~G~~~~eeL~a~Ie~  171 (521)
T PRK14018        114 AGLDYPKLPVLTDNGGTLAQSLNISVYPSWAIIGKDGDVQRIVKGSISEAQALALIRN  171 (521)
T ss_pred             HhCCCcccceeccccHHHHHHcCCCCcCeEEEEcCCCeEEEEEeCCCCHHHHHHHHHH
Confidence                        344567889999999998666 899999999998 89999988884

>PRK15412 thiol:disulfide interchange protein DsbE; Provisional

Probab=99.75  E-value=2.1e-17  Score=109.40  Aligned_cols=89  Identities=19%  Similarity=0.371  Sum_probs=74.3

Q ss_pred             CCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcch-----------------------hhhhhCCCccee
Q 032502           45 EGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELV-----------------------EFSTSWDIKATP  101 (139)
Q Consensus        45 ~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~-----------------------~~~~~~~v~~~P  101 (139)
                      ++|+++|+||++||++|+...|.+.++.++  ++.++.|+.++..                       .+...|++.++|
T Consensus        67 ~gk~vvv~FwatwC~~C~~e~p~l~~l~~~--~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~P  144 (185)
T PRK15412         67 QGKPVLLNVWATWCPTCRAEHQYLNQLSAQ--GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYGAP  144 (185)
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHc--CCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCCCcCC
Confidence            689999999999999999999999999764  6888888875432                       134478999999


Q ss_pred             EEEEE-eCCeEEEEEeCC-ChHHHHHHHHHHhhccC
Q 032502          102 TFFFL-KDGQQVDKLVGA-NKPELQKKVAAAVDSVV  135 (139)
Q Consensus       102 t~~~~-~~g~~~~~~~g~-~~~~l~~~i~~~~~~~~  135 (139)
                      +++++ ++|+++.++.|. +.+++.+.|+.+++...
T Consensus       145 ~t~vid~~G~i~~~~~G~~~~~~l~~~i~~~~~~~~  180 (185)
T PRK15412        145 ETFLIDGNGIIRYRHAGDLNPRVWESEIKPLWEKYS  180 (185)
T ss_pred             eEEEECCCceEEEEEecCCCHHHHHHHHHHHHHHHH
Confidence            66655 899999999998 89999999999887654

>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain

Probab=99.74  E-value=4.9e-18  Score=104.51  Aligned_cols=99  Identities=23%  Similarity=0.471  Sum_probs=75.4

Q ss_pred             HHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCC-CcEEEEEeCCcch-hhhhhCCCcc--eeEEEEE-eC
Q 032502           34 IWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP-SLMFLLVDVDELV-EFSTSWDIKA--TPTFFFL-KD  108 (139)
Q Consensus        34 ~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~-~v~~~~vd~~~~~-~~~~~~~v~~--~Pt~~~~-~~  108 (139)
                      ++++.+..+..++++++|.||++||++|+.+.+.+.+...... ...|+.++.+.++ ...+.|++.+  +||++++ .+
T Consensus         7 ~~~~al~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~~g~~vPt~~f~~~~   86 (117)
T cd02959           7 TLEDGIKEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKDEEFSPDGGYIPRILFLDPS   86 (117)
T ss_pred             eHHHHHHHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchhhhcccCCCccceEEEECCC
Confidence            4677788787889999999999999999999999988765432 4567777777654 4457888876  9999999 69


Q ss_pred             CeEEEEEe---CC-ChHHHHHHHHHHhh
Q 032502          109 GQQVDKLV---GA-NKPELQKKVAAAVD  132 (139)
Q Consensus       109 g~~~~~~~---g~-~~~~l~~~i~~~~~  132 (139)
                      |+++.++.   |. +...+...|+.+.+
T Consensus        87 Gk~~~~~~~~~~~~~~~~f~~~~~~~~~  114 (117)
T cd02959          87 GDVHPEIINKKGNPNYKYFYSSAAQVTE  114 (117)
T ss_pred             CCCchhhccCCCCccccccCCCHHHHHh
Confidence            99987544   33 55556665655543

Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.

>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily

Probab=99.74  E-value=3.5e-17  Score=107.26  Aligned_cols=112  Identities=21%  Similarity=0.421  Sum_probs=82.5

Q ss_pred             ccCCCceEEeechhHHHH--HHHHHh-hCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCc---------
Q 032502           20 EFAGGNVSLVTTKDIWDQ--KMSEAS-KEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDE---------   87 (139)
Q Consensus        20 ~~~~~~~~~i~~~~~~~~--~~~~~~-~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~---------   87 (139)
                      ...|..+|++.-.+....  .+.... .++++++|+||++||+.|+.+.|.++++.++  ++.++.++.++         
T Consensus        34 ~~vG~~ap~f~l~~~~G~~~~~~~~~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~--~~~vi~V~~~~~~~~~~~~~  111 (173)
T TIGR00385        34 ALIGKPVPAFPLAALREPLQAYTPEAFIQGKPVLLNVWASWCPPCRAEHPYLNELAKD--GLPIVGVDYKDQSQNALKFL  111 (173)
T ss_pred             hhcCCCCCCccccccCCCCcccCHHHhcCCCEEEEEEECCcCHHHHHHHHHHHHHHHc--CCEEEEEECCCChHHHHHHH
Confidence            345566666654332221  233222 3689999999999999999999999999765  57777776532         


Q ss_pred             --------------chhhhhhCCCcceeEEEEE-eCCeEEEEEeCC-ChHHHHHHHHHHhhc
Q 032502           88 --------------LVEFSTSWDIKATPTFFFL-KDGQQVDKLVGA-NKPELQKKVAAAVDS  133 (139)
Q Consensus        88 --------------~~~~~~~~~v~~~Pt~~~~-~~g~~~~~~~g~-~~~~l~~~i~~~~~~  133 (139)
                                    ...+.+.|++.++|+++++ ++|+++.++.|. +.+++.++|.+++++
T Consensus       112 ~~~~~~f~~v~~D~~~~~~~~~~v~~~P~~~~id~~G~i~~~~~G~~~~~~l~~~l~~~~~~  173 (173)
T TIGR00385       112 KELGNPYQAILIDPNGKLGLDLGVYGAPETFLVDGNGVILYRHAGPLNNEVWTEGFLPAMEK  173 (173)
T ss_pred             HHcCCCCceEEECCCCchHHhcCCeeCCeEEEEcCCceEEEEEeccCCHHHHHHHHHHHhhC
Confidence                          2245667899999966655 899999999998 999999999998753

Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.

>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1

Probab=99.74  E-value=4.3e-17  Score=100.04  Aligned_cols=81  Identities=23%  Similarity=0.431  Sum_probs=68.4

Q ss_pred             echhHHHHHHHHHhhCCCEEEEEEeC-------CCChhhhhhhHhHHHHHHhCC-CcEEEEEeCCc-------chhhhhh
Q 032502           30 TTKDIWDQKMSEASKEGKIVIANFSA-------TWCGPCRMIAPFFSELSEKYP-SLMFLLVDVDE-------LVEFSTS   94 (139)
Q Consensus        30 ~~~~~~~~~~~~~~~~~k~vlv~f~~-------~~C~~C~~~~~~l~~~~~~~~-~v~~~~vd~~~-------~~~~~~~   94 (139)
                      .+.++|.+.+..  .++++++|.||+       +||++|+.+.|.++++..+++ ++.|+.||+++       +.+++..
T Consensus         7 ~~~~~f~~~i~~--~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~   84 (119)
T cd02952           7 RGYEEFLKLLKS--HEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTD   84 (119)
T ss_pred             cCHHHHHHHHHh--cCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhc
Confidence            456666666642  247899999999       999999999999999999998 69999999976       4588999


Q ss_pred             CCCc-ceeEEEEEeCCeEE
Q 032502           95 WDIK-ATPTFFFLKDGQQV  112 (139)
Q Consensus        95 ~~v~-~~Pt~~~~~~g~~~  112 (139)
                      |+|. ++||++++++|+.+
T Consensus        85 ~~I~~~iPT~~~~~~~~~l  103 (119)
T cd02952          85 PKLTTGVPTLLRWKTPQRL  103 (119)
T ss_pred             cCcccCCCEEEEEcCCcee
Confidence            9998 99999999777533

TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.

>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent

Probab=99.74  E-value=6.9e-17  Score=118.92  Aligned_cols=110  Identities=18%  Similarity=0.253  Sum_probs=84.9

Q ss_pred             cccCCCceEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCC--cEEEEEeCCcch-hh-hhh
Q 032502           19 VEFAGGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS--LMFLLVDVDELV-EF-STS   94 (139)
Q Consensus        19 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~--v~~~~vd~~~~~-~~-~~~   94 (139)
                      ..+.+..+..+ +.++|+..+... ..++++||.||++||++|+.+.|.++++++++.+  +.|+.+|+|.+. .+ +.+
T Consensus       346 dl~~~~~Vv~L-~~~nf~~~v~~~-~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~~~~~~~  423 (463)
T TIGR00424       346 DIFDSNNVVSL-SRPGIENLLKLE-ERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQKEFAKQE  423 (463)
T ss_pred             cccCCCCeEEC-CHHHHHHHHhhh-cCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCccHHHHHH
Confidence            33444445554 556788777422 4689999999999999999999999999999863  889999999764 34 468


Q ss_pred             CCCcceeEEEEEeCCeE-EEEEe-CC-ChHHHHHHHHHH
Q 032502           95 WDIKATPTFFFLKDGQQ-VDKLV-GA-NKPELQKKVAAA  130 (139)
Q Consensus        95 ~~v~~~Pt~~~~~~g~~-~~~~~-g~-~~~~l~~~i~~~  130 (139)
                      |+|.++||+++|++|.. ...+. |. +.+.|..||+.+
T Consensus       424 ~~I~~~PTii~Fk~g~~~~~~Y~~g~R~~e~L~~Fv~~~  462 (463)
T TIGR00424       424 LQLGSFPTILFFPKHSSRPIKYPSEKRDVDSLMSFVNLL  462 (463)
T ss_pred             cCCCccceEEEEECCCCCceeCCCCCCCHHHHHHHHHhh
Confidence            99999999999988752 23454 34 899999998765

This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.

>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional

Probab=99.74  E-value=4e-17  Score=123.85  Aligned_cols=107  Identities=21%  Similarity=0.457  Sum_probs=91.8

Q ss_pred             ceEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhH---HHHHHhCCCcEEEEEeCCc----chhhhhhCCC
Q 032502           25 NVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFF---SELSEKYPSLMFLLVDVDE----LVEFSTSWDI   97 (139)
Q Consensus        25 ~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l---~~~~~~~~~v~~~~vd~~~----~~~~~~~~~v   97 (139)
                      ....+.+.+++++.+..+..++|+|+|+||++||++|+.+.+.+   .++.+.++++.++.+|.++    +.++.++|++
T Consensus       453 ~~~~i~s~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~~~~~v~vDvt~~~~~~~~l~~~~~v  532 (571)
T PRK00293        453 NFQRIKTVAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALADTVLLQADVTANNAEDVALLKHYNV  532 (571)
T ss_pred             CceecCCHHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhcCCEEEEEECCCCChhhHHHHHHcCC
Confidence            45677788999999988877899999999999999999998875   6788888889999999975    3678899999


Q ss_pred             cceeEEEEE-eCCeEE--EEEeCC-ChHHHHHHHHHHh
Q 032502           98 KATPTFFFL-KDGQQV--DKLVGA-NKPELQKKVAAAV  131 (139)
Q Consensus        98 ~~~Pt~~~~-~~g~~~--~~~~g~-~~~~l~~~i~~~~  131 (139)
                      .++||++++ ++|+++  .++.|. +.+++.++++++.
T Consensus       533 ~g~Pt~~~~~~~G~~i~~~r~~G~~~~~~f~~~L~~~~  570 (571)
T PRK00293        533 LGLPTILFFDAQGQEIPDARVTGFMDAAAFAAHLRQLQ  570 (571)
T ss_pred             CCCCEEEEECCCCCCcccccccCCCCHHHHHHHHHHhc
Confidence            999999999 589884  677887 9999999988753

>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1

Probab=99.74  E-value=5.7e-17  Score=93.68  Aligned_cols=79  Identities=20%  Similarity=0.364  Sum_probs=69.4

Q ss_pred             EEEEEeCCCChhhhhhhHhHHHHHHhCC-CcEEEEEeCCcchhhhhhCCCcceeEEEEEeCCeEEEEEeCC-ChHHHHHH
Q 032502           49 VIANFSATWCGPCRMIAPFFSELSEKYP-SLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGA-NKPELQKK  126 (139)
Q Consensus        49 vlv~f~~~~C~~C~~~~~~l~~~~~~~~-~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~  126 (139)
                      .+..||++||++|+.+.+.+++++..++ .+.++.+|.+++++++++|++.++||+++  +|+.  ++.|. +.+++.++
T Consensus         2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~vPt~~~--~g~~--~~~G~~~~~~l~~~   77 (82)
T TIGR00411         2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQKAMEYGIMAVPAIVI--NGDV--EFIGAPTKEELVEA   77 (82)
T ss_pred             EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCHHHHHHcCCccCCEEEE--CCEE--EEecCCCHHHHHHH
Confidence            3678999999999999999999998886 48999999999999999999999999987  7764  66687 89999988


Q ss_pred             HHHHh
Q 032502          127 VAAAV  131 (139)
Q Consensus       127 i~~~~  131 (139)
                      |++++
T Consensus        78 l~~~~   82 (82)
T TIGR00411        78 IKKRL   82 (82)
T ss_pred             HHhhC
Confidence            87753

This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.

>PLN02309 5'-adenylylsulfate reductase

Probab=99.74  E-value=1.2e-16  Score=117.54  Aligned_cols=109  Identities=17%  Similarity=0.281  Sum_probs=85.6

Q ss_pred             ccCCCceEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCC--CcEEEEEeCC-cchhhhh-hC
Q 032502           20 EFAGGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP--SLMFLLVDVD-ELVEFST-SW   95 (139)
Q Consensus        20 ~~~~~~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~--~v~~~~vd~~-~~~~~~~-~~   95 (139)
                      .+....+..+ +.+++++.+... .+++++||+||++||++|+.+.|.+.++++++.  ++.|+.+|++ .+..++. +|
T Consensus       341 l~~~~~Vv~L-t~~nfe~ll~~~-~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~la~~~~  418 (457)
T PLN02309        341 IFNSQNVVAL-SRAGIENLLKLE-NRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKEFAKQEL  418 (457)
T ss_pred             ccCCCCcEEC-CHHHHHHHHHhh-cCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchHHHHhhC
Confidence            3444455544 556777666433 568999999999999999999999999999985  4999999999 7778876 69


Q ss_pred             CCcceeEEEEEeCCeE-EEEEe-CC-ChHHHHHHHHHH
Q 032502           96 DIKATPTFFFLKDGQQ-VDKLV-GA-NKPELQKKVAAA  130 (139)
Q Consensus        96 ~v~~~Pt~~~~~~g~~-~~~~~-g~-~~~~l~~~i~~~  130 (139)
                      +|.++||+++|++|.. ...+. +. +.+.|..||+++
T Consensus       419 ~I~~~PTil~f~~g~~~~v~Y~~~~R~~~~L~~fv~~~  456 (457)
T PLN02309        419 QLGSFPTILLFPKNSSRPIKYPSEKRDVDSLLSFVNSL  456 (457)
T ss_pred             CCceeeEEEEEeCCCCCeeecCCCCcCHHHHHHHHHHh
Confidence            9999999999976652 23344 34 889999999875

>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]

Probab=99.73  E-value=2e-17  Score=121.39  Aligned_cols=106  Identities=20%  Similarity=0.479  Sum_probs=90.9

Q ss_pred             CCceEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCC----CcEEEEEeCCcchhhhhhCCCc
Q 032502           23 GGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP----SLMFLLVDVDELVEFSTSWDIK   98 (139)
Q Consensus        23 ~~~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~----~v~~~~vd~~~~~~~~~~~~v~   98 (139)
                      +..+.. .+.++|+..+    ..+..++|.||||||++|++..|.+.+.+....    .+.++.||+.++..++.+|+|.
T Consensus        24 ~~~Vl~-Lt~dnf~~~i----~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~~~~~~~y~v~   98 (493)
T KOG0190|consen   24 EEDVLV-LTKDNFKETI----NGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEESDLASKYEVR   98 (493)
T ss_pred             ccceEE-EecccHHHHh----ccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchhhhhHhhhcCC
Confidence            344444 4677787777    567899999999999999999999999888874    4999999999999999999999


Q ss_pred             ceeEEEEEeCCeEEEEEeCC-ChHHHHHHHHHHhhc
Q 032502           99 ATPTFFFLKDGQQVDKLVGA-NKPELQKKVAAAVDS  133 (139)
Q Consensus        99 ~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~i~~~~~~  133 (139)
                      ++||+-+|+||+....+.|. ..+.+..||.+-.+-
T Consensus        99 gyPTlkiFrnG~~~~~Y~G~r~adgIv~wl~kq~gP  134 (493)
T KOG0190|consen   99 GYPTLKIFRNGRSAQDYNGPREADGIVKWLKKQSGP  134 (493)
T ss_pred             CCCeEEEEecCCcceeccCcccHHHHHHHHHhccCC
Confidence            99999999999987777888 999999998876443

>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein

Probab=99.73  E-value=2.2e-17  Score=101.24  Aligned_cols=77  Identities=21%  Similarity=0.451  Sum_probs=65.8

Q ss_pred             chhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCC---C-cEEEEEeCC--cchhhhhhCCCcceeEEE
Q 032502           31 TKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP---S-LMFLLVDVD--ELVEFSTSWDIKATPTFF  104 (139)
Q Consensus        31 ~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~---~-v~~~~vd~~--~~~~~~~~~~v~~~Pt~~  104 (139)
                      +.++|...+.   ..+++++|.||++||++|+.+.+.++++++++.   + +.|..+|++  .+..++++|++.++||++
T Consensus         7 ~~~~f~~~i~---~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~Pt~~   83 (114)
T cd02992           7 DAASFNSALL---GSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTGYPTLR   83 (114)
T ss_pred             CHHhHHHHHh---cCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCCCCEEE
Confidence            5667777775   335799999999999999999999999988764   2 888899975  467899999999999999


Q ss_pred             EEeCCe
Q 032502          105 FLKDGQ  110 (139)
Q Consensus       105 ~~~~g~  110 (139)
                      +|++|+
T Consensus        84 lf~~~~   89 (114)
T cd02992          84 YFPPFS   89 (114)
T ss_pred             EECCCC
Confidence            998887

QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.

>PTZ00102 disulphide isomerase; Provisional

Probab=99.73  E-value=7.4e-17  Score=120.37  Aligned_cols=102  Identities=24%  Similarity=0.543  Sum_probs=87.0

Q ss_pred             eEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhC----CCcEEEEEeCCcchhhhhhCCCccee
Q 032502           26 VSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKY----PSLMFLLVDVDELVEFSTSWDIKATP  101 (139)
Q Consensus        26 ~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~----~~v~~~~vd~~~~~~~~~~~~v~~~P  101 (139)
                      +..+ +.++++..+    .++++++|.||++||++|+.+.|.+.++++.+    +++.|+.+|++++..++++|+|.++|
T Consensus        34 v~~l-~~~~f~~~i----~~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~l~~~~~i~~~P  108 (477)
T PTZ00102         34 VTVL-TDSTFDKFI----TENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEMELAQEFGVRGYP  108 (477)
T ss_pred             cEEc-chhhHHHHH----hcCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHHHHHhcCCCccc
Confidence            3443 556676666    45789999999999999999999998887665    25999999999999999999999999


Q ss_pred             EEEEEeCCeEEEEEeCC-ChHHHHHHHHHHhhc
Q 032502          102 TFFFLKDGQQVDKLVGA-NKPELQKKVAAAVDS  133 (139)
Q Consensus       102 t~~~~~~g~~~~~~~g~-~~~~l~~~i~~~~~~  133 (139)
                      |+++|++|+.+ .+.|. +.+.|.+++.+.+..
T Consensus       109 t~~~~~~g~~~-~y~g~~~~~~l~~~l~~~~~~  140 (477)
T PTZ00102        109 TIKFFNKGNPV-NYSGGRTADGIVSWIKKLTGP  140 (477)
T ss_pred             EEEEEECCceE-EecCCCCHHHHHHHHHHhhCC
Confidence            99999998877 77787 999999999998654

>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif

Probab=99.73  E-value=3.2e-17  Score=102.29  Aligned_cols=84  Identities=24%  Similarity=0.399  Sum_probs=67.4

Q ss_pred             HHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeC-----------------------CcchhhhhhC
Q 032502           39 MSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDV-----------------------DELVEFSTSW   95 (139)
Q Consensus        39 ~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~-----------------------~~~~~~~~~~   95 (139)
                      +.++..++++++|+||++||+.|+.+.|.++++.+++ ++.++.++.                       |.+..+++.|
T Consensus        18 ~~~~~~~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~-~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~   96 (127)
T cd03010          18 LTSADLKGKPYLLNVWASWCAPCREEHPVLMALARQG-RVPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGIDL   96 (127)
T ss_pred             ccHHHcCCCEEEEEEEcCcCHHHHHHHHHHHHHHHhc-CcEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHHhc
Confidence            4444556899999999999999999999999999887 477777764                       3344567789


Q ss_pred             CCcceeEEEEE-eCCeEEEEEeCC-ChHHH
Q 032502           96 DIKATPTFFFL-KDGQQVDKLVGA-NKPEL  123 (139)
Q Consensus        96 ~v~~~Pt~~~~-~~g~~~~~~~g~-~~~~l  123 (139)
                      ++.++|+.+++ ++|+++.++.|. +.+.|
T Consensus        97 ~v~~~P~~~~ld~~G~v~~~~~G~~~~~~~  126 (127)
T cd03010          97 GVYGVPETFLIDGDGIIRYKHVGPLTPEVW  126 (127)
T ss_pred             CCCCCCeEEEECCCceEEEEEeccCChHhc
Confidence            99999966555 899999999998 65543

Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.

>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic

Probab=99.73  E-value=7.3e-17  Score=119.69  Aligned_cols=98  Identities=23%  Similarity=0.527  Sum_probs=85.8

Q ss_pred             chhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCC----CcEEEEEeCCcchhhhhhCCCcceeEEEEE
Q 032502           31 TKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP----SLMFLLVDVDELVEFSTSWDIKATPTFFFL  106 (139)
Q Consensus        31 ~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~----~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~  106 (139)
                      +.++++..+    .++++++|.||++||++|+.+.|.+.++++.+.    ++.|+.+|++++.+++++|+|.++||++++
T Consensus         7 ~~~~~~~~i----~~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~   82 (462)
T TIGR01130         7 TKDNFDDFI----KSHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKDLAQKYGVSGYPTLKIF   82 (462)
T ss_pred             CHHHHHHHH----hcCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcHHHHHhCCCccccEEEEE
Confidence            456676666    467899999999999999999999998877653    399999999999999999999999999999


Q ss_pred             eCCeE-EEEEeCC-ChHHHHHHHHHHhh
Q 032502          107 KDGQQ-VDKLVGA-NKPELQKKVAAAVD  132 (139)
Q Consensus       107 ~~g~~-~~~~~g~-~~~~l~~~i~~~~~  132 (139)
                      ++|+. +..+.|. +.+.|.+++.+.+.
T Consensus        83 ~~g~~~~~~~~g~~~~~~l~~~i~~~~~  110 (462)
T TIGR01130        83 RNGEDSVSDYNGPRDADGIVKYMKKQSG  110 (462)
T ss_pred             eCCccceeEecCCCCHHHHHHHHHHhcC
Confidence            99987 7778888 89999999988765

Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).

>PTZ00102 disulphide isomerase; Provisional

Probab=99.73  E-value=1.3e-16  Score=119.11  Aligned_cols=108  Identities=23%  Similarity=0.438  Sum_probs=90.0

Q ss_pred             CceEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCC---cEEEEEeCCcchhhhhhCCCcce
Q 032502           24 GNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS---LMFLLVDVDELVEFSTSWDIKAT  100 (139)
Q Consensus        24 ~~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~---v~~~~vd~~~~~~~~~~~~v~~~  100 (139)
                      +.+..+ ..++|++.+.   .++++++|+||++||++|+.+.|.++++++.+.+   +.++.+|++.+...++.|+++++
T Consensus       357 ~~v~~l-~~~~f~~~v~---~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~~~~~~~~v~~~  432 (477)
T PTZ00102        357 GPVKVV-VGNTFEEIVF---KSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANETPLEEFSWSAF  432 (477)
T ss_pred             CCeEEe-cccchHHHHh---cCCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCccchhcCCCccc
Confidence            344444 4677777653   5589999999999999999999999999888753   88999999999999999999999


Q ss_pred             eEEEEEeCCeEE-EEEeCC-ChHHHHHHHHHHhhccC
Q 032502          101 PTFFFLKDGQQV-DKLVGA-NKPELQKKVAAAVDSVV  135 (139)
Q Consensus       101 Pt~~~~~~g~~~-~~~~g~-~~~~l~~~i~~~~~~~~  135 (139)
                      ||++++++|+.+ .++.|. +.+.+.++|++......
T Consensus       433 Pt~~~~~~~~~~~~~~~G~~~~~~l~~~i~~~~~~~~  469 (477)
T PTZ00102        433 PTILFVKAGERTPIPYEGERTVEGFKEFVNKHATNPF  469 (477)
T ss_pred             CeEEEEECCCcceeEecCcCCHHHHHHHHHHcCCCCc
Confidence            999999766544 567887 99999999999876543

>TIGR02187 GlrX_arch Glutaredoxin-like domain protein

Probab=99.72  E-value=1.9e-16  Score=107.16  Aligned_cols=90  Identities=22%  Similarity=0.344  Sum_probs=76.1

Q ss_pred             CCCEEEEEEeC---CCChhhhhhhHhHHHHHHhCCCcE--EEEEeCCcchhhhhhCCCcceeEEEEEeCCeEEE-EEeCC
Q 032502           45 EGKIVIANFSA---TWCGPCRMIAPFFSELSEKYPSLM--FLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVD-KLVGA  118 (139)
Q Consensus        45 ~~k~vlv~f~~---~~C~~C~~~~~~l~~~~~~~~~v~--~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~-~~~g~  118 (139)
                      ++...++.|++   +||++|+.+.|.++++++.++++.  ++.+|.+++++++++|+|.++||+++|++|+.+. ++.|.
T Consensus        18 ~~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~~~l~~~~~V~~~Pt~~~f~~g~~~~~~~~G~   97 (215)
T TIGR02187        18 KNPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPEDKEEAEKYGVERVPTTIILEEGKDGGIRYTGI   97 (215)
T ss_pred             CCCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcccHHHHHHcCCCccCEEEEEeCCeeeEEEEeec
Confidence            34455666877   999999999999999999997654  5666666999999999999999999999999984 88898


Q ss_pred             -ChHHHHHHHHHHhhcc
Q 032502          119 -NKPELQKKVAAAVDSV  134 (139)
Q Consensus       119 -~~~~l~~~i~~~~~~~  134 (139)
                       +.+++..+|+.+++..
T Consensus        98 ~~~~~l~~~i~~~~~~~  114 (215)
T TIGR02187        98 PAGYEFAALIEDIVRVS  114 (215)
T ss_pred             CCHHHHHHHHHHHHHhc
Confidence             8889999999886543

This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.

>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB

Probab=99.71  E-value=9.5e-17  Score=102.86  Aligned_cols=86  Identities=21%  Similarity=0.395  Sum_probs=67.3

Q ss_pred             CCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcc------------hhh-hhhC---CCcceeEEEEE-e
Q 032502           45 EGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDEL------------VEF-STSW---DIKATPTFFFL-K  107 (139)
Q Consensus        45 ~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~------------~~~-~~~~---~v~~~Pt~~~~-~  107 (139)
                      .++..+|+||++||++|+.+.|.++++++++ ++.++.|+.|..            ... ...|   ++.++||++++ +
T Consensus        49 l~~~~lvnFWAsWCppCr~e~P~L~~l~~~~-~~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~LID~  127 (153)
T TIGR02738        49 QDDYALVFFYQSTCPYCHQFAPVLKRFSQQF-GLPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFLVNV  127 (153)
T ss_pred             cCCCEEEEEECCCChhHHHHHHHHHHHHHHc-CCcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEEEeC
Confidence            3567799999999999999999999999998 566777776642            222 2345   78999998888 6


Q ss_pred             CCeE-EEEEeCC-ChHHHHHHHHHHh
Q 032502          108 DGQQ-VDKLVGA-NKPELQKKVAAAV  131 (139)
Q Consensus       108 ~g~~-~~~~~g~-~~~~l~~~i~~~~  131 (139)
                      +|++ .....|. +.+++.+.|.+++
T Consensus       128 ~G~~i~~~~~G~~s~~~l~~~I~~ll  153 (153)
T TIGR02738       128 NTRKAYPVLQGAVDEAELANRMDEIL  153 (153)
T ss_pred             CCCEEEEEeecccCHHHHHHHHHHhC
Confidence            7665 5567788 8899998888764

This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.

>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=99.70  E-value=1e-16  Score=96.47  Aligned_cols=85  Identities=19%  Similarity=0.278  Sum_probs=76.5

Q ss_pred             CCEEEEEEeCCCChhhhhhhHhHHHHHHhCCC-cEEEEEeCCcchhhhhhCCCc--ceeEEEEEeC--CeEEEEEeCC-C
Q 032502           46 GKIVIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVDELVEFSTSWDIK--ATPTFFFLKD--GQQVDKLVGA-N  119 (139)
Q Consensus        46 ~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~-v~~~~vd~~~~~~~~~~~~v~--~~Pt~~~~~~--g~~~~~~~g~-~  119 (139)
                      ++++++.|+++||+.|..+.+.++++++++.+ +.|+.+|.++++.++..|++.  ++|+++++++  |+......+. +
T Consensus        12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~~~~~~~~i~~~~~P~~~~~~~~~~~k~~~~~~~~~   91 (103)
T cd02982          12 GKPLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADDFGRHLEYFGLKEEDLPVIAIINLSDGKKYLMPEEELT   91 (103)
T ss_pred             CCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhhHHHHHHcCCChhhCCEEEEEecccccccCCCccccC
Confidence            78999999999999999999999999999975 999999999999999999999  9999999977  6665555565 8


Q ss_pred             hHHHHHHHHHH
Q 032502          120 KPELQKKVAAA  130 (139)
Q Consensus       120 ~~~l~~~i~~~  130 (139)
                      .+.|.++|.++
T Consensus        92 ~~~l~~fi~~~  102 (103)
T cd02982          92 AESLEEFVEDF  102 (103)
T ss_pred             HHHHHHHHHhh
Confidence            89999998875

Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w

>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A

Probab=99.70  E-value=8.6e-17  Score=98.19  Aligned_cols=84  Identities=26%  Similarity=0.562  Sum_probs=65.0

Q ss_pred             hCCCEEEEEEeCCCChhhhhhhHhHHH---HHHhCC-CcEEEEEeCCcc--------------------hhhhhhCCCcc
Q 032502           44 KEGKIVIANFSATWCGPCRMIAPFFSE---LSEKYP-SLMFLLVDVDEL--------------------VEFSTSWDIKA   99 (139)
Q Consensus        44 ~~~k~vlv~f~~~~C~~C~~~~~~l~~---~~~~~~-~v~~~~vd~~~~--------------------~~~~~~~~v~~   99 (139)
                      .++++++++||++||++|+.+.+.+..   +...+. ++.++.++++..                    .++.++|+|.+
T Consensus         3 ~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~g   82 (112)
T PF13098_consen    3 GNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVNG   82 (112)
T ss_dssp             TTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--S
T ss_pred             CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCCc
Confidence            468999999999999999999998875   444433 477888888643                    35788999999


Q ss_pred             eeEEEEE-eCCeEEEEEeCC-ChHHHHHHH
Q 032502          100 TPTFFFL-KDGQQVDKLVGA-NKPELQKKV  127 (139)
Q Consensus       100 ~Pt~~~~-~~g~~~~~~~g~-~~~~l~~~i  127 (139)
                      +||++++ .+|+++.++.|. +.++|.++|
T Consensus        83 tPt~~~~d~~G~~v~~~~G~~~~~~l~~~L  112 (112)
T PF13098_consen   83 TPTIVFLDKDGKIVYRIPGYLSPEELLKML  112 (112)
T ss_dssp             SSEEEECTTTSCEEEEEESS--HHHHHHHH
T ss_pred             cCEEEEEcCCCCEEEEecCCCCHHHHHhhC
Confidence            9999999 699999999999 889988765

...

>TIGR02740 TraF-like TraF-like protein

Probab=99.69  E-value=1.3e-15  Score=105.99  Aligned_cols=93  Identities=20%  Similarity=0.261  Sum_probs=75.7

Q ss_pred             HHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCc-----------chhhhhhCCCcceeEEEEEe
Q 032502           39 MSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDE-----------LVEFSTSWDIKATPTFFFLK  107 (139)
Q Consensus        39 ~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~-----------~~~~~~~~~v~~~Pt~~~~~  107 (139)
                      ......+++++||+||++||++|+.+.|.|.+++++++ +.++.|+.|.           +..++++|||.++|+++++.
T Consensus       159 ~~l~~l~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg-~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~  237 (271)
T TIGR02740       159 RVMKDLAKKSGLFFFFKSDCPYCHQQAPILQAFEDRYG-IEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLAD  237 (271)
T ss_pred             HHHHHhcCCeEEEEEECCCCccHHHHhHHHHHHHHHcC-cEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEE
Confidence            44455678999999999999999999999999999984 7777777764           35688999999999999995


Q ss_pred             C-C-eEEEEEeCC-ChHHHHHHHHHHhh
Q 032502          108 D-G-QQVDKLVGA-NKPELQKKVAAAVD  132 (139)
Q Consensus       108 ~-g-~~~~~~~g~-~~~~l~~~i~~~~~  132 (139)
                      . | ++.....|. +.++|.+.|..+..
T Consensus       238 ~~~~~v~~v~~G~~s~~eL~~~i~~~a~  265 (271)
T TIGR02740       238 PDPNQFTPIGFGVMSADELVDRILLAAH  265 (271)
T ss_pred             CCCCEEEEEEeCCCCHHHHHHHHHHHhc
Confidence            4 4 444455687 99999998887754

This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.

>PRK03147 thiol-disulfide oxidoreductase; Provisional

Probab=99.68  E-value=2.9e-16  Score=102.75  Aligned_cols=92  Identities=30%  Similarity=0.588  Sum_probs=77.4

Q ss_pred             HHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCC--cEEEEEeCCc----------------------chhhhhh
Q 032502           39 MSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS--LMFLLVDVDE----------------------LVEFSTS   94 (139)
Q Consensus        39 ~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~--v~~~~vd~~~----------------------~~~~~~~   94 (139)
                      +.+...++++++|+||++||+.|+...+.+.++++++++  +.++.++.+.                      +..+.+.
T Consensus        54 ~~l~~~~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  133 (173)
T PRK03147         54 IELKDLKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVIDA  133 (173)
T ss_pred             EeHHHcCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHHH
Confidence            444445689999999999999999999999999999863  8888888753                      3466789


Q ss_pred             CCCcceeEEEEE-eCCeEEEEEeCC-ChHHHHHHHHHH
Q 032502           95 WDIKATPTFFFL-KDGQQVDKLVGA-NKPELQKKVAAA  130 (139)
Q Consensus        95 ~~v~~~Pt~~~~-~~g~~~~~~~g~-~~~~l~~~i~~~  130 (139)
                      |++..+|+++++ ++|+++..+.|. +.+++.++++++
T Consensus       134 ~~v~~~P~~~lid~~g~i~~~~~g~~~~~~l~~~l~~~  171 (173)
T PRK03147        134 YGVGPLPTTFLIDKDGKVVKVITGEMTEEQLEEYLEKI  171 (173)
T ss_pred             cCCCCcCeEEEECCCCcEEEEEeCCCCHHHHHHHHHHh
Confidence            999999988877 799999888888 888888888765

>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells

Probab=99.67  E-value=5.1e-16  Score=94.63  Aligned_cols=94  Identities=12%  Similarity=0.220  Sum_probs=73.9

Q ss_pred             echhHHHHHHHHHhhCCCEEEEEEeC--CCCh---hhhhhhHhHHHHHHhCCCcEEEEEeC-----CcchhhhhhCCCc-
Q 032502           30 TTKDIWDQKMSEASKEGKIVIANFSA--TWCG---PCRMIAPFFSELSEKYPSLMFLLVDV-----DELVEFSTSWDIK-   98 (139)
Q Consensus        30 ~~~~~~~~~~~~~~~~~k~vlv~f~~--~~C~---~C~~~~~~l~~~~~~~~~v~~~~vd~-----~~~~~~~~~~~v~-   98 (139)
                      .+.++|++.+    .+++.+||.||+  |||+   +|..+.|.+.+.+.   .+.+..||+     .++.+++++|+|. 
T Consensus         6 L~~~nF~~~v----~~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~---~v~lakVd~~d~~~~~~~~L~~~y~I~~   78 (116)
T cd03007           6 LDTVTFYKVI----PKFKYSLVKFDTAYPYGEKHEAFTRLAESSASATD---DLLVAEVGIKDYGEKLNMELGERYKLDK   78 (116)
T ss_pred             CChhhHHHHH----hcCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcC---ceEEEEEecccccchhhHHHHHHhCCCc
Confidence            4677888877    567899999999  8888   77777776655433   388999999     4678899999999 


Q ss_pred             -ceeEEEEEeCCe--EEEEEeC--CChHHHHHHHHHH
Q 032502           99 -ATPTFFFLKDGQ--QVDKLVG--ANKPELQKKVAAA  130 (139)
Q Consensus        99 -~~Pt~~~~~~g~--~~~~~~g--~~~~~l~~~i~~~  130 (139)
                       ++||+.+|.+|.  ....+.|  .+.+.|.++|.+.
T Consensus        79 ~gyPTl~lF~~g~~~~~~~Y~G~~r~~~~lv~~v~~~  115 (116)
T cd03007          79 ESYPVIYLFHGGDFENPVPYSGADVTVDALQRFLKGN  115 (116)
T ss_pred             CCCCEEEEEeCCCcCCCccCCCCcccHHHHHHHHHhc
Confidence             999999998884  2234556  4888898888753

It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.

>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors

Probab=99.67  E-value=6.2e-16  Score=98.17  Aligned_cols=74  Identities=22%  Similarity=0.436  Sum_probs=60.6

Q ss_pred             HHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCC---------CcEEEEEeCCcc-----------------------
Q 032502           41 EASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP---------SLMFLLVDVDEL-----------------------   88 (139)
Q Consensus        41 ~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~---------~v~~~~vd~~~~-----------------------   88 (139)
                      ++..++|+++|+|||+||++|+.+.|.|.++++++.         ++.++.|+.|+.                       
T Consensus        20 ls~~kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~   99 (146)
T cd03008          20 VARLENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDE   99 (146)
T ss_pred             HHHhCCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccch
Confidence            344679999999999999999999999999876442         488888887642                       


Q ss_pred             --hhhhhhCCCcceeEEEEE-eCCeEEEE
Q 032502           89 --VEFSTSWDIKATPTFFFL-KDGQQVDK  114 (139)
Q Consensus        89 --~~~~~~~~v~~~Pt~~~~-~~g~~~~~  114 (139)
                        ..+.+.|++.++|+++++ .+|+++.+
T Consensus       100 ~~~~l~~~y~v~~iPt~vlId~~G~Vv~~  128 (146)
T cd03008         100 FRRELEAQFSVEELPTVVVLKPDGDVLAA  128 (146)
T ss_pred             HHHHHHHHcCCCCCCEEEEECCCCcEEee
Confidence              135678999999998888 79998876

RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.

>PHA02125 thioredoxin-like protein

Probab=99.66  E-value=2.2e-15  Score=85.77  Aligned_cols=70  Identities=33%  Similarity=0.719  Sum_probs=59.0

Q ss_pred             EEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhhhhhCCCcceeEEEEEeCCeEEEEEeCC--ChHHHHHHH
Q 032502           50 IANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGA--NKPELQKKV  127 (139)
Q Consensus        50 lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~--~~~~l~~~i  127 (139)
                      +++||++||++|+.+.|.|+++     .+.++.+|.+++.+++++|+|.++||++   +|+.+.++.|.  +..+|.+.|
T Consensus         2 iv~f~a~wC~~Ck~~~~~l~~~-----~~~~~~vd~~~~~~l~~~~~v~~~PT~~---~g~~~~~~~G~~~~~~~l~~~~   73 (75)
T PHA02125          2 IYLFGAEWCANCKMVKPMLANV-----EYTYVDVDTDEGVELTAKHHIRSLPTLV---NTSTLDRFTGVPRNVAELKEKL   73 (75)
T ss_pred             EEEEECCCCHhHHHHHHHHHHH-----hheEEeeeCCCCHHHHHHcCCceeCeEE---CCEEEEEEeCCCCcHHHHHHHh
Confidence            7899999999999999999765     2568899999999999999999999987   78888888887  335555543

>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif

Probab=99.65  E-value=2.8e-15  Score=92.89  Aligned_cols=94  Identities=16%  Similarity=0.187  Sum_probs=71.2

Q ss_pred             HHHHHhhCCCEEEEEEeCCCChhhhhhhHh-H--HHHHHhC-CCcEEEEEeCCcchhhhh--------hCCCcceeEEEE
Q 032502           38 KMSEASKEGKIVIANFSATWCGPCRMIAPF-F--SELSEKY-PSLMFLLVDVDELVEFST--------SWDIKATPTFFF  105 (139)
Q Consensus        38 ~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~-l--~~~~~~~-~~v~~~~vd~~~~~~~~~--------~~~v~~~Pt~~~  105 (139)
                      .+..+..++|+++|+|+++||++|+.|.+. +  .++.+.. .++.++.+|.++.+++.+        .|++.++|++++
T Consensus         7 al~~Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt~vf   86 (124)
T cd02955           7 AFEKARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPLNVF   86 (124)
T ss_pred             HHHHHHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCEEEE
Confidence            355666789999999999999999999763 3  4566553 468899999998777654        368999999999


Q ss_pred             E-eCCeEEEEEeCC------ChHHHHHHHHHHh
Q 032502          106 L-KDGQQVDKLVGA------NKPELQKKVAAAV  131 (139)
Q Consensus       106 ~-~~g~~~~~~~g~------~~~~l~~~i~~~~  131 (139)
                      + .+|+++....+.      +...+.++++++.
T Consensus        87 l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (124)
T cd02955          87 LTPDLKPFFGGTYFPPEDRYGRPGFKTVLEKIR  119 (124)
T ss_pred             ECCCCCEEeeeeecCCCCcCCCcCHHHHHHHHH
Confidence            9 899999776554      2234666655553

The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.

>TIGR02187 GlrX_arch Glutaredoxin-like domain protein

Probab=99.65  E-value=1.8e-15  Score=102.42  Aligned_cols=81  Identities=12%  Similarity=0.272  Sum_probs=71.1

Q ss_pred             CCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhhhhhCCCcceeEEEEEeCCeEEEEEeCC-ChHHHH
Q 032502           46 GKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGA-NKPELQ  124 (139)
Q Consensus        46 ~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~l~  124 (139)
                      +..+++.||++||++|+.+.+.+++++.+++++.+..+|.+++++++++|+|.++||++++++|+.   +.|. ..++|.
T Consensus       133 ~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~~~~~~~~~~~V~~vPtl~i~~~~~~---~~G~~~~~~l~  209 (215)
T TIGR02187       133 EPVRIEVFVTPTCPYCPYAVLMAHKFALANDKILGEMIEANENPDLAEKYGVMSVPKIVINKGVEE---FVGAYPEEQFL  209 (215)
T ss_pred             CCcEEEEEECCCCCCcHHHHHHHHHHHHhcCceEEEEEeCCCCHHHHHHhCCccCCEEEEecCCEE---EECCCCHHHHH
Confidence            445556699999999999999999999988889999999999999999999999999999988863   6687 888888


Q ss_pred             HHHHH
Q 032502          125 KKVAA  129 (139)
Q Consensus       125 ~~i~~  129 (139)
                      ++|..
T Consensus       210 ~~l~~  214 (215)
T TIGR02187       210 EYILS  214 (215)
T ss_pred             HHHHh
Confidence            88764

This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.

>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A

Probab=99.64  E-value=1.7e-15  Score=89.86  Aligned_cols=66  Identities=38%  Similarity=0.727  Sum_probs=55.1

Q ss_pred             CCEEEEEEeCCCChhhhhhhHhHHHHHHhCC---CcEEEEEeCCcc-------------------------hhhhhhCCC
Q 032502           46 GKIVIANFSATWCGPCRMIAPFFSELSEKYP---SLMFLLVDVDEL-------------------------VEFSTSWDI   97 (139)
Q Consensus        46 ~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~---~v~~~~vd~~~~-------------------------~~~~~~~~v   97 (139)
                      ||+++|+||++||+.|+...|.|.+++++++   ++.++.|+.|+.                         ..+.+.|++
T Consensus         1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i   80 (95)
T PF13905_consen    1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGI   80 (95)
T ss_dssp             TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-
T ss_pred             CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCC
Confidence            6899999999999999999999999999999   599999988753                         236778999


Q ss_pred             cceeEEEEE-eCCeE
Q 032502           98 KATPTFFFL-KDGQQ  111 (139)
Q Consensus        98 ~~~Pt~~~~-~~g~~  111 (139)
                      .++|+++++ ++|++
T Consensus        81 ~~iP~~~lld~~G~I   95 (95)
T PF13905_consen   81 NGIPTLVLLDPDGKI   95 (95)
T ss_dssp             TSSSEEEEEETTSBE
T ss_pred             CcCCEEEEECCCCCC
Confidence            999999988 77764

...

>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX

Probab=99.64  E-value=1.3e-15  Score=95.70  Aligned_cols=79  Identities=30%  Similarity=0.538  Sum_probs=62.9

Q ss_pred             HHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCC----CcEEEEEeCCcch-----------------------
Q 032502           37 QKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP----SLMFLLVDVDELV-----------------------   89 (139)
Q Consensus        37 ~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~----~v~~~~vd~~~~~-----------------------   89 (139)
                      +.+.++..++|+++|+||++||+.|+...|.++++++++.    ++.++.++.+...                       
T Consensus         8 ~~v~l~~~~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~   87 (132)
T cd02964           8 GVVPVSALEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEEL   87 (132)
T ss_pred             ccccHHHhCCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHH
Confidence            3455556789999999999999999999999999887764    4677777776432                       


Q ss_pred             --hhhhhCCCcceeEEEEE-eCCeEEEEE
Q 032502           90 --EFSTSWDIKATPTFFFL-KDGQQVDKL  115 (139)
Q Consensus        90 --~~~~~~~v~~~Pt~~~~-~~g~~~~~~  115 (139)
                        .+.+.|++.++|+++++ ++|+++.+.
T Consensus        88 ~~~~~~~~~v~~iPt~~lid~~G~iv~~~  116 (132)
T cd02964          88 RELLEKQFKVEGIPTLVVLKPDGDVVTTN  116 (132)
T ss_pred             HHHHHHHcCCCCCCEEEEECCCCCEEchh
Confidence              34567999999999988 689887653

Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.

>PTZ00056 glutathione peroxidase; Provisional

Probab=99.64  E-value=1.1e-15  Score=102.17  Aligned_cols=111  Identities=22%  Similarity=0.267  Sum_probs=80.3

Q ss_pred             CceEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCC--CcEEEEEeCCc-----------chh
Q 032502           24 GNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP--SLMFLLVDVDE-----------LVE   90 (139)
Q Consensus        24 ~~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~-----------~~~   90 (139)
                      ..++++...+...+.+.+...++|++||.||++||+.|+...|.|.++++++.  ++.++.|++++           ...
T Consensus        17 ~~~pdf~l~d~~G~~vsL~~~kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~d~~e~~~~   96 (199)
T PTZ00056         17 KSIYDYTVKTLEGTTVPMSSLKNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTSQFLNQEFPNTKDIRK   96 (199)
T ss_pred             CCCCceEEECCCCCEEeHHHhCCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecchhccCCCCCCHHHHHH
Confidence            34455544333344456666689999999999999999999999999999986  48889887631           112


Q ss_pred             hhhhCCC------------------------------------ccee----EEEEEeCCeEEEEEeCC-ChHHHHHHHHH
Q 032502           91 FSTSWDI------------------------------------KATP----TFFFLKDGQQVDKLVGA-NKPELQKKVAA  129 (139)
Q Consensus        91 ~~~~~~v------------------------------------~~~P----t~~~~~~g~~~~~~~g~-~~~~l~~~i~~  129 (139)
                      +.+++++                                    ..+|    ++++.++|+++.++.|. +.+.+.+.|.+
T Consensus        97 f~~~~~~~fpvl~d~~v~g~~~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~~~g~~~~~~l~~~I~~  176 (199)
T PTZ00056         97 FNDKNKIKYNFFEPIEVNGENTHELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAYFSPRTEPLELEKKIAE  176 (199)
T ss_pred             HHHHcCCCceeeeeeeccCCccCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEEEeCCCCCHHHHHHHHHH
Confidence            2333322                                    1223    55666999999999888 88899999999


Q ss_pred             Hhhcc
Q 032502          130 AVDSV  134 (139)
Q Consensus       130 ~~~~~  134 (139)
                      +++..
T Consensus       177 ll~~~  181 (199)
T PTZ00056        177 LLGVK  181 (199)
T ss_pred             HHHHH
Confidence            88764

>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif

Probab=99.63  E-value=2.1e-15  Score=94.50  Aligned_cols=76  Identities=33%  Similarity=0.618  Sum_probs=61.5

Q ss_pred             HHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCC----CcEEEEEeCCcc------------------------hh
Q 032502           39 MSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP----SLMFLLVDVDEL------------------------VE   90 (139)
Q Consensus        39 ~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~----~v~~~~vd~~~~------------------------~~   90 (139)
                      +.+...++|++||+||++||+.|+.+.|.+.++++++.    ++.++.++.|..                        ..
T Consensus        11 v~l~~~~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (131)
T cd03009          11 VPVSSLEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSR   90 (131)
T ss_pred             ccHHHhCCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHH
Confidence            44445678999999999999999999999998877763    467777776633                        34


Q ss_pred             hhhhCCCcceeEEEEE-eCCeEEEE
Q 032502           91 FSTSWDIKATPTFFFL-KDGQQVDK  114 (139)
Q Consensus        91 ~~~~~~v~~~Pt~~~~-~~g~~~~~  114 (139)
                      +++.|++.++|+++++ ++|+++.+
T Consensus        91 ~~~~~~v~~~P~~~lid~~G~i~~~  115 (131)
T cd03009          91 LNRTFKIEGIPTLIILDADGEVVTT  115 (131)
T ss_pred             HHHHcCCCCCCEEEEECCCCCEEcc
Confidence            6778999999999999 69988765

TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the

>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)

Probab=99.63  E-value=3e-15  Score=83.31  Aligned_cols=62  Identities=15%  Similarity=0.328  Sum_probs=56.5

Q ss_pred             EEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhhhhhCCCcceeEEEEEeCCeEEE
Q 032502           50 IANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVD  113 (139)
Q Consensus        50 lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~  113 (139)
                      ++.|+++||++|+.+.+.++++...++++.+..+|.+++++++++|++.++|++++  +|+.+.
T Consensus         3 v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~id~~~~~~l~~~~~i~~vPti~i--~~~~~~   64 (67)
T cd02973           3 IEVFVSPTCPYCPDAVQAANRIAALNPNISAEMIDAAEFPDLADEYGVMSVPAIVI--NGKVEF   64 (67)
T ss_pred             EEEEECCCCCCcHHHHHHHHHHHHhCCceEEEEEEcccCHhHHHHcCCcccCEEEE--CCEEEE
Confidence            67899999999999999999998888889999999999999999999999999987  666544

All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri

>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins

Probab=99.63  E-value=8e-16  Score=98.10  Aligned_cols=97  Identities=33%  Similarity=0.581  Sum_probs=74.3

Q ss_pred             CCCceEEeechh--HHHHHHHHHhhCCCEEEEEEeCC-CChhhhhhhHhHHHHHHhCC--CcEEEEEeCCcc--------
Q 032502           22 AGGNVSLVTTKD--IWDQKMSEASKEGKIVIANFSAT-WCGPCRMIAPFFSELSEKYP--SLMFLLVDVDEL--------   88 (139)
Q Consensus        22 ~~~~~~~i~~~~--~~~~~~~~~~~~~k~vlv~f~~~-~C~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~~--------   88 (139)
                      .|..+|++....  ...+.+.+...++|+++|.||+. ||++|+...|.+.++++.+.  ++.++.+..+.+        
T Consensus         2 ~G~~~P~~~~~~~~~~g~~~~l~~~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~   81 (146)
T PF08534_consen    2 VGDKAPDFSLKDLDLDGKPVSLSDFKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLK   81 (146)
T ss_dssp             TTSB--CCEEEEEETTSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHH
T ss_pred             CCCCCCCeEEEeecCCCCEecHHHhCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHH
Confidence            345555555422  44455666667899999999999 99999999999999988854  588888876532        


Q ss_pred             -------------hhhhhhCCCc---------ceeEEEEE-eCCeEEEEEeCC
Q 032502           89 -------------VEFSTSWDIK---------ATPTFFFL-KDGQQVDKLVGA  118 (139)
Q Consensus        89 -------------~~~~~~~~v~---------~~Pt~~~~-~~g~~~~~~~g~  118 (139)
                                   ..+.+.|++.         ++|+++++ ++|+++....|.
T Consensus        82 ~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~P~~~lId~~G~V~~~~~g~  134 (146)
T PF08534_consen   82 KYGINFPVLSDPDGALAKALGVTIMEDPGNGFGIPTTFLIDKDGKVVYRHVGP  134 (146)
T ss_dssp             HTTTTSEEEEETTSHHHHHTTCEEECCTTTTSSSSEEEEEETTSBEEEEEESS
T ss_pred             hhCCCceEEechHHHHHHHhCCccccccccCCeecEEEEEECCCEEEEEEeCC
Confidence                         3567789988         99987776 999999999988

Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....

>PLN02399 phospholipid hydroperoxide glutathione peroxidase

Probab=99.62  E-value=3e-15  Score=101.94  Aligned_cols=113  Identities=22%  Similarity=0.289  Sum_probs=85.1

Q ss_pred             ccCCCceEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCC--CcEEEEEeCCc--------c-
Q 032502           20 EFAGGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP--SLMFLLVDVDE--------L-   88 (139)
Q Consensus        20 ~~~~~~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~--------~-   88 (139)
                      ...+..++++...+...+.+.+...++|++||.||++||+.|....|.|.+++++|.  ++.++.|+++.        . 
T Consensus        73 ~~~g~~aPdF~l~d~~G~~vsLsd~kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d~~~~~e~~s~~  152 (236)
T PLN02399         73 AATEKSVHDFTVKDIDGKDVALSKFKGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNP  152 (236)
T ss_pred             hhcCCCCCceEEECCCCCEEeHHHhCCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecccccccCCCCHH
Confidence            345667777776555555666676789999999999999999999999999999996  48898888631        1 


Q ss_pred             --hhhh-hhCC----------------------------------CcceeEEEEE-eCCeEEEEEeCC-ChHHHHHHHHH
Q 032502           89 --VEFS-TSWD----------------------------------IKATPTFFFL-KDGQQVDKLVGA-NKPELQKKVAA  129 (139)
Q Consensus        89 --~~~~-~~~~----------------------------------v~~~Pt~~~~-~~g~~~~~~~g~-~~~~l~~~i~~  129 (139)
                        ..++ ++++                                  +...|+.+++ ++|+++.++.|. +.++|++.|++
T Consensus       153 ei~~f~~~~~g~~fPvl~~~D~~G~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~G~~~~~~le~~I~~  232 (236)
T PLN02399        153 EIKQFACTRFKAEFPIFDKVDVNGPSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYPPTTSPFQIEKDIQK  232 (236)
T ss_pred             HHHHHHHHhcCCCCccccccCCCcchhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEECCCCCHHHHHHHHHH
Confidence              1111 2221                                  1224766666 999999999999 88999999998


Q ss_pred             Hhh
Q 032502          130 AVD  132 (139)
Q Consensus       130 ~~~  132 (139)
                      +++
T Consensus       233 lL~  235 (236)
T PLN02399        233 LLA  235 (236)
T ss_pred             Hhc
Confidence            874

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.62  E-value=4e-15  Score=119.53  Aligned_cols=92  Identities=25%  Similarity=0.406  Sum_probs=77.8

Q ss_pred             hhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCC--cEEEEEeC---C------------------------cchhhhh
Q 032502           43 SKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS--LMFLLVDV---D------------------------ELVEFST   93 (139)
Q Consensus        43 ~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~--v~~~~vd~---~------------------------~~~~~~~   93 (139)
                      ..++|++||+||++||++|+...|.|++++++|++  +.++.|..   +                        ....+.+
T Consensus       417 ~lkGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~  496 (1057)
T PLN02919        417 DLKGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWR  496 (1057)
T ss_pred             hcCCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHH
Confidence            35799999999999999999999999999999974  67777742   2                        2334667


Q ss_pred             hCCCcceeEEEEE-eCCeEEEEEeCC-ChHHHHHHHHHHhhcc
Q 032502           94 SWDIKATPTFFFL-KDGQQVDKLVGA-NKPELQKKVAAAVDSV  134 (139)
Q Consensus        94 ~~~v~~~Pt~~~~-~~g~~~~~~~g~-~~~~l~~~i~~~~~~~  134 (139)
                      +|+|.++|+++++ ++|+++.++.|. ..+.|.++|+.++...
T Consensus       497 ~~~V~~iPt~ilid~~G~iv~~~~G~~~~~~l~~~l~~~l~~~  539 (1057)
T PLN02919        497 ELGVSSWPTFAVVSPNGKLIAQLSGEGHRKDLDDLVEAALQYY  539 (1057)
T ss_pred             hcCCCccceEEEECCCCeEEEEEecccCHHHHHHHHHHHHHhh
Confidence            8999999999999 899999999998 8899999999887643

>cd02958 UAS UAS family; UAS is a domain of unknown function

Probab=99.61  E-value=2.2e-14  Score=87.94  Aligned_cols=100  Identities=15%  Similarity=0.248  Sum_probs=81.7

Q ss_pred             hHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhH---HHHHHhCC-CcEEEEEeCC--cchhhhhhCCCcceeEEEEE
Q 032502           33 DIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFF---SELSEKYP-SLMFLLVDVD--ELVEFSTSWDIKATPTFFFL  106 (139)
Q Consensus        33 ~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l---~~~~~~~~-~v~~~~vd~~--~~~~~~~~~~v~~~Pt~~~~  106 (139)
                      .++++.+..+..++|+++|+|+++||++|+.+...+   .++.+... ++.++.+|.+  +...++..|++.++|+++++
T Consensus         4 gs~~~a~~~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i   83 (114)
T cd02958           4 GSFEDAKQEAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSSEGQRFLQSYKVDKYPHIAII   83 (114)
T ss_pred             CCHHHHHHHHHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCccHHHHHHHhCccCCCeEEEE
Confidence            456778888888899999999999999999987543   44444443 4667777776  45678899999999999999


Q ss_pred             -e-CCeEEEEEeCC-ChHHHHHHHHHHhh
Q 032502          107 -K-DGQQVDKLVGA-NKPELQKKVAAAVD  132 (139)
Q Consensus       107 -~-~g~~~~~~~g~-~~~~l~~~i~~~~~  132 (139)
                       . +|+++.+..|. ++++|...|++.+.
T Consensus        84 ~~~~g~~l~~~~G~~~~~~f~~~L~~~~~  112 (114)
T cd02958          84 DPRTGEVLKVWSGNITPEDLLSQLIEFLE  112 (114)
T ss_pred             eCccCcEeEEEcCCCCHHHHHHHHHHHHh
Confidence             5 79999999999 99999999888764

Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),

>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides

Probab=99.60  E-value=1.9e-14  Score=84.34  Aligned_cols=76  Identities=16%  Similarity=0.310  Sum_probs=66.8

Q ss_pred             hCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhhhhhCCCcceeEEEEEeCCeEEEEEeCC-ChHH
Q 032502           44 KEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGA-NKPE  122 (139)
Q Consensus        44 ~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~  122 (139)
                      ..++.-+..|+++||++|....+.++++...++++.+..+|.++.++++.+|+|.++|++++  ||+.+..  |. +.++
T Consensus        10 l~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~~~~e~a~~~~V~~vPt~vi--dG~~~~~--G~~~~~e   85 (89)
T cd03026          10 LNGPINFETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMIDGALFQDEVEERGIMSVPAIFL--NGELFGF--GRMTLEE   85 (89)
T ss_pred             cCCCEEEEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEEEhHhCHHHHHHcCCccCCEEEE--CCEEEEe--CCCCHHH
Confidence            45677888899999999999999999999999999999999999999999999999999976  8887764  65 5444


Q ss_pred             H
Q 032502          123 L  123 (139)
Q Consensus       123 l  123 (139)
                      +
T Consensus        86 ~   86 (89)
T cd03026          86 I   86 (89)
T ss_pred             H
Confidence            3

AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.

>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD

Probab=99.60  E-value=5.2e-15  Score=98.26  Aligned_cols=110  Identities=15%  Similarity=0.269  Sum_probs=76.1

Q ss_pred             CCCceEEeechhHHHHHHHH--HhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCc------------
Q 032502           22 AGGNVSLVTTKDIWDQKMSE--ASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDE------------   87 (139)
Q Consensus        22 ~~~~~~~i~~~~~~~~~~~~--~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~------------   87 (139)
                      .|..+|++...+..++.+..  ...++|+++|+||++||+.|+.+.|.+.++.+++ ++.++.+..+.            
T Consensus        48 vG~~aP~f~l~d~~G~~v~l~~~~~~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~-~~~vv~Is~~~~~~~~~~~~~~~  126 (189)
T TIGR02661        48 VGDAAPIFNLPDFDGEPVRIGGSIAPGRPTLLMFTAPSCPVCDKLFPIIKSIARAE-ETDVVMISDGTPAEHRRFLKDHE  126 (189)
T ss_pred             CCCcCCCcEecCCCCCEEeccchhcCCCEEEEEEECCCChhHHHHHHHHHHHHHhc-CCcEEEEeCCCHHHHHHHHHhcC
Confidence            34455555544333343443  2357899999999999999999999999998775 45555554321            


Q ss_pred             --------chhhhhhCCCcceeEEEEE-eCCeEEEEEeCCChHHHHHHHHHHhh
Q 032502           88 --------LVEFSTSWDIKATPTFFFL-KDGQQVDKLVGANKPELQKKVAAAVD  132 (139)
Q Consensus        88 --------~~~~~~~~~v~~~Pt~~~~-~~g~~~~~~~g~~~~~l~~~i~~~~~  132 (139)
                              ..++.+.|++..+|+.+++ ++|+++.+......+++++.++++..
T Consensus       127 ~~~~~~~~~~~i~~~y~v~~~P~~~lID~~G~I~~~g~~~~~~~le~ll~~l~~  180 (189)
T TIGR02661       127 LGGERYVVSAEIGMAFQVGKIPYGVLLDQDGKIRAKGLTNTREHLESLLEADRE  180 (189)
T ss_pred             CCcceeechhHHHHhccCCccceEEEECCCCeEEEccCCCCHHHHHHHHHHHHc
Confidence                    2356778999999987666 89999876322267788888776533

This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.

>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif

Probab=99.60  E-value=5.1e-15  Score=91.72  Aligned_cols=83  Identities=29%  Similarity=0.530  Sum_probs=64.4

Q ss_pred             hhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeC---------------------CcchhhhhhCCCccee
Q 032502           43 SKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDV---------------------DELVEFSTSWDIKATP  101 (139)
Q Consensus        43 ~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~---------------------~~~~~~~~~~~v~~~P  101 (139)
                      ...+++++|+||++||+.|+.+.+.+.++++.+. +..+.+|-                     +.+..+++.|++.++|
T Consensus        17 ~~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~-~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P   95 (123)
T cd03011          17 SLSGKPVLVYFWATWCPVCRFTSPTVNQLAADYP-VVSVALRSGDDGAVARFMQKKGYGFPVINDPDGVISARWGVSVTP   95 (123)
T ss_pred             HhCCCEEEEEEECCcChhhhhhChHHHHHHhhCC-EEEEEccCCCHHHHHHHHHHcCCCccEEECCCcHHHHhCCCCccc
Confidence            3467999999999999999999999999988742 22222221                     2345688899999999


Q ss_pred             EEEEEeCCeEEEEEeCC-ChHHHHHH
Q 032502          102 TFFFLKDGQQVDKLVGA-NKPELQKK  126 (139)
Q Consensus       102 t~~~~~~g~~~~~~~g~-~~~~l~~~  126 (139)
                      +++++.+++++....|. +.+.|.+.
T Consensus        96 ~~~vid~~gi~~~~~g~~~~~~~~~~  121 (123)
T cd03011          96 AIVIVDPGGIVFVTTGVTSEWGLRLR  121 (123)
T ss_pred             EEEEEcCCCeEEEEeccCCHHHHHhh
Confidence            99999544488888898 88888664

The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.

>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins

Probab=99.60  E-value=1.1e-14  Score=88.33  Aligned_cols=76  Identities=33%  Similarity=0.708  Sum_probs=67.0

Q ss_pred             HhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhC--CCcEEEEEeCCcc-----------------------hhhhhhCC
Q 032502           42 ASKEGKIVIANFSATWCGPCRMIAPFFSELSEKY--PSLMFLLVDVDEL-----------------------VEFSTSWD   96 (139)
Q Consensus        42 ~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~--~~v~~~~vd~~~~-----------------------~~~~~~~~   96 (139)
                      ....+++++++||++||+.|+...+.+.++.+++  +++.++.++.+..                       ..+.+.|+
T Consensus        15 ~~~~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (116)
T cd02966          15 SDLKGKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYG   94 (116)
T ss_pred             HHcCCCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcC
Confidence            3345899999999999999999999999999999  5799999999885                       67888999


Q ss_pred             CcceeEEEEE-eCCeEEEEEeC
Q 032502           97 IKATPTFFFL-KDGQQVDKLVG  117 (139)
Q Consensus        97 v~~~Pt~~~~-~~g~~~~~~~g  117 (139)
                      +.++|+++++ ++|+++.++.|
T Consensus        95 ~~~~P~~~l~d~~g~v~~~~~g  116 (116)
T cd02966          95 VRGLPTTFLIDRDGRIRARHVG  116 (116)
T ss_pred             cCccceEEEECCCCcEEEEecC
Confidence            9999999888 79999888765

TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.

>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]

Probab=99.59  E-value=6.9e-15  Score=108.25  Aligned_cols=114  Identities=26%  Similarity=0.481  Sum_probs=87.2

Q ss_pred             CCCCCCCCcccCCCceEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCC---CcEEEEEeCCc
Q 032502           11 DEEDGEHPVEFAGGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP---SLMFLLVDVDE   87 (139)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~---~v~~~~vd~~~   87 (139)
                      +-.+...|.+...++|..+ ..++|+..+.   .++|-|||.||+|||++|+++.|.+++|++.|.   ++.+..+|.+.
T Consensus       353 ~~kSqpiPe~~~~~pVkvv-Vgknfd~iv~---de~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~~~vviAKmDaTa  428 (493)
T KOG0190|consen  353 HLKSQPIPEDNDRSPVKVV-VGKNFDDIVL---DEGKDVLVEFYAPWCGHCKALAPIYEELAEKYKDDENVVIAKMDATA  428 (493)
T ss_pred             ccccCCCCcccccCCeEEE-eecCHHHHhh---ccccceEEEEcCcccchhhhhhhHHHHHHHHhcCCCCcEEEEecccc
Confidence            3345555666666666665 4566776664   568999999999999999999999999999987   48999999998


Q ss_pred             chhhhhhCCCcceeEEEEEeCCeE--EEEEeCC-ChHHHHHHHHHH
Q 032502           88 LVEFSTSWDIKATPTFFFLKDGQQ--VDKLVGA-NKPELQKKVAAA  130 (139)
Q Consensus        88 ~~~~~~~~~v~~~Pt~~~~~~g~~--~~~~~g~-~~~~l~~~i~~~  130 (139)
                      |.-  ....+.++||+++++.|..  ...+.|. +.++|..+|.+.
T Consensus       429 Nd~--~~~~~~~fPTI~~~pag~k~~pv~y~g~R~le~~~~fi~~~  472 (493)
T KOG0190|consen  429 NDV--PSLKVDGFPTILFFPAGHKSNPVIYNGDRTLEDLKKFIKKS  472 (493)
T ss_pred             ccC--ccccccccceEEEecCCCCCCCcccCCCcchHHHHhhhccC
Confidence            774  4557788999999966552  2334455 888888888764

>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain

Probab=99.59  E-value=1.6e-14  Score=90.02  Aligned_cols=80  Identities=21%  Similarity=0.392  Sum_probs=65.0

Q ss_pred             HHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCC--CcEEEEEeCC---------------------------cch
Q 032502           39 MSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP--SLMFLLVDVD---------------------------ELV   89 (139)
Q Consensus        39 ~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~--~v~~~~vd~~---------------------------~~~   89 (139)
                      +.+...+++++||+||++||+.|....|.|+++++++.  ++.++.|+.+                           ...
T Consensus        16 v~l~~~~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~   95 (126)
T cd03012          16 LSLAQLRGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDY   95 (126)
T ss_pred             cCHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCch
Confidence            34444578999999999999999999999999999997  4788877542                           122


Q ss_pred             hhhhhCCCcceeEEEEE-eCCeEEEEEeCC
Q 032502           90 EFSTSWDIKATPTFFFL-KDGQQVDKLVGA  118 (139)
Q Consensus        90 ~~~~~~~v~~~Pt~~~~-~~g~~~~~~~g~  118 (139)
                      .+.+.|++.++|+++++ ++|+++..+.|.
T Consensus        96 ~~~~~~~v~~~P~~~vid~~G~v~~~~~G~  125 (126)
T cd03012          96 ATWRAYGNQYWPALYLIDPTGNVRHVHFGE  125 (126)
T ss_pred             HHHHHhCCCcCCeEEEECCCCcEEEEEecC
Confidence            35667899999998888 799999988774

Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.

>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2

Probab=99.59  E-value=2e-14  Score=81.97  Aligned_cols=71  Identities=23%  Similarity=0.290  Sum_probs=56.6

Q ss_pred             EEEEeCCCChhhhhhhHhHHHHHHhCCC-cEEEEEeCCcchhhhhhCCCcceeEEEEEeCCeEEEEEeCC--ChHHHHHH
Q 032502           50 IANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGA--NKPELQKK  126 (139)
Q Consensus        50 lv~f~~~~C~~C~~~~~~l~~~~~~~~~-v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~--~~~~l~~~  126 (139)
                      .|.||++||++|+.+.|.++++.++++. +.++.+|   +.+.+.+|++.++||+++  ||+.+  +.|.  +.+++.++
T Consensus         2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~---~~~~a~~~~v~~vPti~i--~G~~~--~~G~~~~~~~l~~~   74 (76)
T TIGR00412         2 KIQIYGTGCANCQMTEKNVKKAVEELGIDAEFEKVT---DMNEILEAGVTATPGVAV--DGELV--IMGKIPSKEEIKEI   74 (76)
T ss_pred             EEEEECCCCcCHHHHHHHHHHHHHHcCCCeEEEEeC---CHHHHHHcCCCcCCEEEE--CCEEE--EEeccCCHHHHHHH
Confidence            3789999999999999999999999863 7776666   233467899999999999  99887  4564  55666665


Q ss_pred             H
Q 032502          127 V  127 (139)
Q Consensus       127 i  127 (139)
                      +
T Consensus        75 l   75 (76)
T TIGR00412        75 L   75 (76)
T ss_pred             h
Confidence            4

This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.

>PRK13728 conjugal transfer protein TrbB; Provisional

Probab=99.59  E-value=4.4e-14  Score=92.30  Aligned_cols=84  Identities=19%  Similarity=0.349  Sum_probs=70.0

Q ss_pred             EEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcc-------------hhhhhhCCC--cceeEEEEE-eCCeEE-
Q 032502           50 IANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDEL-------------VEFSTSWDI--KATPTFFFL-KDGQQV-  112 (139)
Q Consensus        50 lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~-------------~~~~~~~~v--~~~Pt~~~~-~~g~~~-  112 (139)
                      +|+||++||++|+.+.|.|.++++++ ++.++.|+.|..             ..+...|++  .++|+.+++ ++|+++ 
T Consensus        73 lV~FwaswCp~C~~e~P~L~~l~~~~-g~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~i~~  151 (181)
T PRK13728         73 VVLFMQGHCPYCHQFDPVLKQLAQQY-GFSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTLEAL  151 (181)
T ss_pred             EEEEECCCCHhHHHHHHHHHHHHHHc-CCEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCcEEE
Confidence            77799999999999999999999998 578877777633             235667885  699987777 899986 


Q ss_pred             EEEeCC-ChHHHHHHHHHHhhcc
Q 032502          113 DKLVGA-NKPELQKKVAAAVDSV  134 (139)
Q Consensus       113 ~~~~g~-~~~~l~~~i~~~~~~~  134 (139)
                      ..+.|. +.+++.+.|.++++..
T Consensus       152 ~~~~G~~~~~~L~~~I~~ll~~~  174 (181)
T PRK13728        152 PLLQGATDAAGFMARMDTVLQMY  174 (181)
T ss_pred             EEEECCCCHHHHHHHHHHHHhhh
Confidence            468888 9999999999998763

>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic

Probab=99.58  E-value=3.3e-14  Score=105.55  Aligned_cols=103  Identities=25%  Similarity=0.478  Sum_probs=82.8

Q ss_pred             ceEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCC----cEEEEEeCCcchhhhhhCCCcce
Q 032502           25 NVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS----LMFLLVDVDELVEFSTSWDIKAT  100 (139)
Q Consensus        25 ~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~----v~~~~vd~~~~~~~~~~~~v~~~  100 (139)
                      .+.. ...++|.+.+.   .++++++|+||++||++|+.+.|.++++++.+.+    +.|+.+|++.+.- .. |++.++
T Consensus       347 ~v~~-l~~~~f~~~v~---~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~~-~~-~~i~~~  420 (462)
T TIGR01130       347 PVKV-LVGKNFDEIVL---DETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATANDV-PP-FEVEGF  420 (462)
T ss_pred             ccEE-eeCcCHHHHhc---cCCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCcc-CC-CCcccc
Confidence            3443 35677777664   4589999999999999999999999999999864    8899999997653 33 999999


Q ss_pred             eEEEEEeCCeEE--EEEeCC-ChHHHHHHHHHHhhc
Q 032502          101 PTFFFLKDGQQV--DKLVGA-NKPELQKKVAAAVDS  133 (139)
Q Consensus       101 Pt~~~~~~g~~~--~~~~g~-~~~~l~~~i~~~~~~  133 (139)
                      ||++++++|...  ..+.|. +.+.|.++|.+....
T Consensus       421 Pt~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~  456 (462)
T TIGR01130       421 PTIKFVPAGKKSEPVPYDGDRTLEDFSKFIAKHATF  456 (462)
T ss_pred             CEEEEEeCCCCcCceEecCcCCHHHHHHHHHhcCCC
Confidence            999999877653  456676 899999999887543

Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).

>PRK11509 hydrogenase-1 operon protein HyaE; Provisional

Probab=99.55  E-value=2.3e-13  Score=84.51  Aligned_cols=92  Identities=13%  Similarity=0.146  Sum_probs=80.2

Q ss_pred             CCEEEEEEeCC--CChhhhhhhHhHHHHHHhCC-C-cEEEEEeCCcchhhhhhCCCcceeEEEEEeCCeEEEEEeCC-Ch
Q 032502           46 GKIVIANFSAT--WCGPCRMIAPFFSELSEKYP-S-LMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGA-NK  120 (139)
Q Consensus        46 ~k~vlv~f~~~--~C~~C~~~~~~l~~~~~~~~-~-v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~  120 (139)
                      ....+|+|-.+  -++.+..+.-.|.+++++|+ + ++++.+|+|+++.++.+|||.++||+++|++|+.+.+..|. +.
T Consensus        34 ~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~~~LA~~fgV~siPTLl~FkdGk~v~~i~G~~~k  113 (132)
T PRK11509         34 APDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEAIGDRFGVFRFPATLVFTGGNYRGVLNGIHPW  113 (132)
T ss_pred             CCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCCCHHHHHHcCCccCCEEEEEECCEEEEEEeCcCCH
Confidence            44555555533  67888899999999999998 3 89999999999999999999999999999999999999999 99


Q ss_pred             HHHHHHHHHHhhccCCC
Q 032502          121 PELQKKVAAAVDSVVPS  137 (139)
Q Consensus       121 ~~l~~~i~~~~~~~~~~  137 (139)
                      +++.++|.++++...+.
T Consensus       114 ~~l~~~I~~~L~~~~~~  130 (132)
T PRK11509        114 AELINLMRGLVEPQQER  130 (132)
T ss_pred             HHHHHHHHHHhcCcCcc
Confidence            99999999998876543

>PLN02412 probable glutathione peroxidase

Probab=99.54  E-value=3.3e-14  Score=92.69  Aligned_cols=96  Identities=22%  Similarity=0.295  Sum_probs=73.5

Q ss_pred             HHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCC--CcEEEEEeCC--------cchhh----hhhCC-------
Q 032502           38 KMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP--SLMFLLVDVD--------ELVEF----STSWD-------   96 (139)
Q Consensus        38 ~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~--~v~~~~vd~~--------~~~~~----~~~~~-------   96 (139)
                      .+.+....+|++||+||++||+.|+...+.|.+++++|.  ++.++.|+++        ...++    .++++       
T Consensus        21 ~v~l~~~~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~~~~~~~~~~~~~~~~~~~~~~~~~fpvl~  100 (167)
T PLN02412         21 DVSLNQYKGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCNQFLGQEPGSNEEIQQTVCTRFKAEFPIFD  100 (167)
T ss_pred             EEeHHHhCCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEecccccccCCCCCHHHHHHHHHHccCCCCceEe
Confidence            344555678999999999999999999999999999997  4888888763        21111    11111       


Q ss_pred             ---------------------------CcceeEEEEE-eCCeEEEEEeCC-ChHHHHHHHHHHhhc
Q 032502           97 ---------------------------IKATPTFFFL-KDGQQVDKLVGA-NKPELQKKVAAAVDS  133 (139)
Q Consensus        97 ---------------------------v~~~Pt~~~~-~~g~~~~~~~g~-~~~~l~~~i~~~~~~  133 (139)
                                                 +...|+.+++ ++|+++.++.|. +.+++...|.++++.
T Consensus       101 ~~d~~g~~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~~g~~~~~~l~~~i~~~l~~  166 (167)
T PLN02412        101 KVDVNGKNTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRYAPTTSPLKIEKDIQNLLGQ  166 (167)
T ss_pred             EEeeCCCCCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEECCCCCHHHHHHHHHHHHhh
Confidence                                       3335776666 999999999999 889999999998764

>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus

Probab=99.53  E-value=6.3e-14  Score=86.97  Aligned_cols=89  Identities=11%  Similarity=0.164  Sum_probs=63.1

Q ss_pred             eechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhH---HHHHHhCC-CcEEEEEeCCcchhhhhhCCCcceeEEE
Q 032502           29 VTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFF---SELSEKYP-SLMFLLVDVDELVEFSTSWDIKATPTFF  104 (139)
Q Consensus        29 i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l---~~~~~~~~-~v~~~~vd~~~~~~~~~~~~v~~~Pt~~  104 (139)
                      |....+++..+..+..++|+++|+|++.||++|+.+...+   .++.+... ++..+.++.+....-....+ .++||++
T Consensus         6 i~W~~~~eeal~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~d~td~~~~~~g-~~vPtiv   84 (130)
T cd02960           6 IIWVQTYEEGLYKAKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVHETTDKNLSPDG-QYVPRIM   84 (130)
T ss_pred             ccchhhHHHHHHHHHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEeccCCCCcCccC-cccCeEE
Confidence            4455578889999989999999999999999999998765   34444432 45555666542211111234 6899999


Q ss_pred             EE-eCCeEEEEEeCC
Q 032502          105 FL-KDGQQVDKLVGA  118 (139)
Q Consensus       105 ~~-~~g~~~~~~~g~  118 (139)
                      ++ .+|+++.++.|.
T Consensus        85 Fld~~g~vi~~i~Gy   99 (130)
T cd02960          85 FVDPSLTVRADITGR   99 (130)
T ss_pred             EECCCCCCccccccc
Confidence            99 889888776654

They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.

>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source

Probab=99.53  E-value=1.6e-14  Score=88.32  Aligned_cols=70  Identities=19%  Similarity=0.347  Sum_probs=54.4

Q ss_pred             CCCEEEEEEeCCCChhhhhhhHhHHHHHHhCC-CcEEEEEeCC---c-----------------chhhhhhCCCcceeEE
Q 032502           45 EGKIVIANFSATWCGPCRMIAPFFSELSEKYP-SLMFLLVDVD---E-----------------LVEFSTSWDIKATPTF  103 (139)
Q Consensus        45 ~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~-~v~~~~vd~~---~-----------------~~~~~~~~~v~~~Pt~  103 (139)
                      ++++++|+||++||+.|+.+.|.++++++.+. ++.++.+.-+   +                 +..+.+.|++..+|+.
T Consensus        20 ~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~P~~   99 (114)
T cd02967          20 PGRPTLLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLASDGEKAEHQRFLKKHGLEAFPYVLSAELGMAYQVSKLPYA   99 (114)
T ss_pred             CCCeEEEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEEeCCCHHHHHHHHHHhCCCCCcEEecHHHHhhcCCCCcCeE
Confidence            38999999999999999999999999988875 4666655211   1                 1235667889999998


Q ss_pred             EEE-eCCeEEEE
Q 032502          104 FFL-KDGQQVDK  114 (139)
Q Consensus       104 ~~~-~~g~~~~~  114 (139)
                      +++ ++|+++.+
T Consensus       100 ~vid~~G~v~~~  111 (114)
T cd02967         100 VLLDEAGVIAAK  111 (114)
T ss_pred             EEECCCCeEEec
Confidence            887 78988765

mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.

>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs

Probab=99.53  E-value=8.3e-14  Score=91.10  Aligned_cols=91  Identities=19%  Similarity=0.387  Sum_probs=73.5

Q ss_pred             CCCEEEEEEeCCCChhhhhhhHhHHHHHHhCC--CcEEEEEeCCc-----------------------------chhhhh
Q 032502           45 EGKIVIANFSATWCGPCRMIAPFFSELSEKYP--SLMFLLVDVDE-----------------------------LVEFST   93 (139)
Q Consensus        45 ~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~-----------------------------~~~~~~   93 (139)
                      .++++||+||++||+.|....+.|.++.++++  ++.++.+..+.                             +..+.+
T Consensus        24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~  103 (171)
T cd02969          24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEVAK  103 (171)
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHHHH
Confidence            68999999999999999999999999999987  58888887753                             123466


Q ss_pred             hCCCcceeEEEEE-eCCeEEEEEe---------CC-ChHHHHHHHHHHhhccC
Q 032502           94 SWDIKATPTFFFL-KDGQQVDKLV---------GA-NKPELQKKVAAAVDSVV  135 (139)
Q Consensus        94 ~~~v~~~Pt~~~~-~~g~~~~~~~---------g~-~~~~l~~~i~~~~~~~~  135 (139)
                      .|++..+|+++++ ++|+++....         +. +...+.+.|..++...+
T Consensus       104 ~~~v~~~P~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~  156 (171)
T cd02969         104 AYGAACTPDFFLFDPDGKLVYRGRIDDSRPGNDPPVTGRDLRAALDALLAGKP  156 (171)
T ss_pred             HcCCCcCCcEEEECCCCeEEEeecccCCcccccccccHHHHHHHHHHHHcCCC
Confidence            7899999988888 7999886631         11 56789999999887654

Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.

>TIGR02540 gpx7 putative glutathione peroxidase Gpx7

Probab=99.51  E-value=9.5e-14  Score=89.31  Aligned_cols=94  Identities=20%  Similarity=0.264  Sum_probs=71.0

Q ss_pred             HHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCC--CcEEEEEeC--------Ccc---hhhhhh-CC-------
Q 032502           38 KMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP--SLMFLLVDV--------DEL---VEFSTS-WD-------   96 (139)
Q Consensus        38 ~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~--~v~~~~vd~--------~~~---~~~~~~-~~-------   96 (139)
                      .+.++..++|++||.||++||+.|....|.+.++++++.  ++.++.+++        +..   ..++++ ++       
T Consensus        14 ~~~l~~~~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~~~~~~~~~d~~~~~~~f~~~~~~~~fp~~~   93 (153)
T TIGR02540        14 TVSLEKYRGKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPCNQFGESEPDSSKEIESFARRNYGVTFPMFS   93 (153)
T ss_pred             EecHHHhCCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEeccccccCCCCCHHHHHHHHHHhcCCCCCccc
Confidence            355556779999999999999999999999999999986  588888885        211   112211 11       


Q ss_pred             ----------------C---ccee-----EEEEEeCCeEEEEEeCC-ChHHHHHHHHHHh
Q 032502           97 ----------------I---KATP-----TFFFLKDGQQVDKLVGA-NKPELQKKVAAAV  131 (139)
Q Consensus        97 ----------------v---~~~P-----t~~~~~~g~~~~~~~g~-~~~~l~~~i~~~~  131 (139)
                                      +   ..+|     ++++.++|+++.++.|. +.+++.+.|.+++
T Consensus        94 d~~~~~~~~~~~~~~~~~~~~~~p~~~~~tflID~~G~v~~~~~g~~~~~~l~~~i~~l~  153 (153)
T TIGR02540        94 KIKILGSEAEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFWRPEEPVEEIRPEITALV  153 (153)
T ss_pred             eEecCCCCCCcHHHHHHhcCCCCCCCccEEEEEcCCCcEEEEECCCCCHHHHHHHHHHhC
Confidence                            1   1367     56666999999999998 8888888887764

This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.

>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626

Probab=99.50  E-value=2.6e-13  Score=89.13  Aligned_cols=92  Identities=15%  Similarity=0.230  Sum_probs=70.0

Q ss_pred             HHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEE------EEEeCCcc-----------------------
Q 032502           38 KMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMF------LLVDVDEL-----------------------   88 (139)
Q Consensus        38 ~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~------~~vd~~~~-----------------------   88 (139)
                      .+..+...||+.||.|||.||+.|+..+|.+.++..+  ++.+      +.||.++.                       
T Consensus        51 ~~~~~~l~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~--~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~  128 (184)
T TIGR01626        51 PWGSAELAGKVRVVHHIAGRTSAKEXNASLIDAIKAA--KFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQ  128 (184)
T ss_pred             eccHHHcCCCEEEEEEEecCCChhhccchHHHHHHHc--CCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcce
Confidence            4455567799999999999999999999999999655  4555      66777642                       


Q ss_pred             ------hhhhhhCCCcceeEE--EEEeCCeEEEEEeCC-ChHHHHHHHHHHhh
Q 032502           89 ------VEFSTSWDIKATPTF--FFLKDGQQVDKLVGA-NKPELQKKVAAAVD  132 (139)
Q Consensus        89 ------~~~~~~~~v~~~Pt~--~~~~~g~~~~~~~g~-~~~~l~~~i~~~~~  132 (139)
                            ......|++.++|+.  ++.++|+++.+..|. +.+++.+ +..++.
T Consensus       129 vllD~~g~v~~~~gv~~~P~T~fVIDk~GkVv~~~~G~l~~ee~e~-~~~li~  180 (184)
T TIGR01626       129 VVLDDKGAVKNAWQLNSEDSAIIVLDKTGKVKFVKEGALSDSDIQT-VISLVN  180 (184)
T ss_pred             EEECCcchHHHhcCCCCCCceEEEECCCCcEEEEEeCCCCHHHHHH-HHHHHH
Confidence                  123557899999755  444999999999999 8888777 444433

This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.

>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]

Probab=99.50  E-value=7.9e-14  Score=96.41  Aligned_cols=87  Identities=21%  Similarity=0.465  Sum_probs=75.4

Q ss_pred             hCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCC----cEEEEEeCCcchhhhhhCCCcceeEEEEEeCCeEEEEEeCCC
Q 032502           44 KEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS----LMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGAN  119 (139)
Q Consensus        44 ~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~----v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~  119 (139)
                      +.+...+|.||+|||++|++..|.+.++--..++    +++-.+|+..-+.++..|||+++||+.+++++..+....|.+
T Consensus        41 kdddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefgiqGYPTIk~~kgd~a~dYRG~R~  120 (468)
T KOG4277|consen   41 KDDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFGIQGYPTIKFFKGDHAIDYRGGRE  120 (468)
T ss_pred             ccCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchhhHhhhccCCCceEEEecCCeeeecCCCcc
Confidence            4567999999999999999999999988655542    888899999999999999999999999999998887765668


Q ss_pred             hHHHHHHHHHH
Q 032502          120 KPELQKKVAAA  130 (139)
Q Consensus       120 ~~~l~~~i~~~  130 (139)
                      .+.|..+..+.
T Consensus       121 Kd~iieFAhR~  131 (468)
T KOG4277|consen  121 KDAIIEFAHRC  131 (468)
T ss_pred             HHHHHHHHHhc
Confidence            89988876653

>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]

Probab=99.49  E-value=9.4e-14  Score=95.85  Aligned_cols=89  Identities=24%  Similarity=0.527  Sum_probs=78.4

Q ss_pred             hCCCEEEEEEeCCCChhhhhhhHhHHHHHHh----CCC--cEEEEEeCCcchhhhhhCCCcceeEEEEEeCCeEEE-EEe
Q 032502           44 KEGKIVIANFSATWCGPCRMIAPFFSELSEK----YPS--LMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVD-KLV  116 (139)
Q Consensus        44 ~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~----~~~--v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~-~~~  116 (139)
                      .++..|+|.|||+||+.++...|.+++.+.+    +|+  +.+..|||+.+..++.+|.|..+||+-+|.||.... .+.
T Consensus        11 ~s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I~KyPTlKvfrnG~~~~rEYR   90 (375)
T KOG0912|consen   11 DSNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHINKYPTLKVFRNGEMMKREYR   90 (375)
T ss_pred             ccceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhccccCceeeeeeccchhhhhhc
Confidence            4578999999999999999999999776655    453  889999999999999999999999999999999887 566


Q ss_pred             CC-ChHHHHHHHHHHhh
Q 032502          117 GA-NKPELQKKVAAAVD  132 (139)
Q Consensus       117 g~-~~~~l~~~i~~~~~  132 (139)
                      |. +.+.|.++|++.+.
T Consensus        91 g~RsVeaL~efi~kq~s  107 (375)
T KOG0912|consen   91 GQRSVEALIEFIEKQLS  107 (375)
T ss_pred             cchhHHHHHHHHHHHhc
Confidence            77 89999999887654

>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate

Probab=99.47  E-value=1.3e-13  Score=88.64  Aligned_cols=88  Identities=25%  Similarity=0.394  Sum_probs=63.8

Q ss_pred             HHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCC--CcEEEEEeCCc--------c---hhhhhh-CC-------
Q 032502           38 KMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP--SLMFLLVDVDE--------L---VEFSTS-WD-------   96 (139)
Q Consensus        38 ~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~--------~---~~~~~~-~~-------   96 (139)
                      .+.++..++|++||+||++||+ |....|.|+++++++.  ++.++.++.+.        .   ..+++. ++       
T Consensus        14 ~v~l~~~~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~f~~~~~~~~fp~~~   92 (152)
T cd00340          14 PVSLSKYKGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCNQFGGQEPGSNEEIKEFCETNYGVTFPMFA   92 (152)
T ss_pred             EEeHHHhCCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccCccccCCCCCHHHHHHHHHHhcCCCceeee
Confidence            3455556799999999999999 9999999999999996  48888886531        1   122221 11       


Q ss_pred             ----------------Cccee------------EEEEEeCCeEEEEEeCC-ChHHHHHH
Q 032502           97 ----------------IKATP------------TFFFLKDGQQVDKLVGA-NKPELQKK  126 (139)
Q Consensus        97 ----------------v~~~P------------t~~~~~~g~~~~~~~g~-~~~~l~~~  126 (139)
                                      +.++|            ++++.++|+++.++.|. +.+++.+.
T Consensus        93 d~d~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ttflId~~G~i~~~~~G~~~~~~l~~~  151 (152)
T cd00340          93 KIDVNGENAHPLYKYLKEEAPGLLGKDIKWNFTKFLVDRDGEVVKRFAPTTDPEELEKD  151 (152)
T ss_pred             eEeccCCCCChHHHHHHhcCCCCCCCccccccEEEEECCCCcEEEEECCCCCHHHHHhc
Confidence                            23456            44445999999999998 77776553

GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.

>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx)

Probab=99.47  E-value=2.7e-13  Score=86.11  Aligned_cols=90  Identities=14%  Similarity=0.278  Sum_probs=69.0

Q ss_pred             HHHHHhhCCCEEEEEEeCCC-ChhhhhhhHhHHHHHHhCCCcEEEEEeCCcc-----------------------hhhhh
Q 032502           38 KMSEASKEGKIVIANFSATW-CGPCRMIAPFFSELSEKYPSLMFLLVDVDEL-----------------------VEFST   93 (139)
Q Consensus        38 ~~~~~~~~~k~vlv~f~~~~-C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~-----------------------~~~~~   93 (139)
                      .+.+....+|++||+||+.| |+.|+...+.|.++++++.++.++.|+.+..                       ..+.+
T Consensus        18 ~~~l~~~~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~   97 (143)
T cd03014          18 EVSLADFAGKVKVISVFPSIDTPVCATQTKRFNKEAAKLDNTVVLTISADLPFAQKRWCGAEGVDNVTTLSDFRDHSFGK   97 (143)
T ss_pred             EEeHHHhCCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcCCCEEEEEECCCHHHHHHHHHhcCCCCceEeecCcccHHHH
Confidence            34445567899999999988 6999999999999999998899999888631                       23456


Q ss_pred             hCCCcc------eeEEEEE-eCCeEEEEEeCC---ChHHHHHHH
Q 032502           94 SWDIKA------TPTFFFL-KDGQQVDKLVGA---NKPELQKKV  127 (139)
Q Consensus        94 ~~~v~~------~Pt~~~~-~~g~~~~~~~g~---~~~~l~~~i  127 (139)
                      .||+..      .|+.+++ ++|+++....|.   ...++.+.|
T Consensus        98 ~~gv~~~~~~~~~~~~~iid~~G~I~~~~~~~~~~~~~~~~~~~  141 (143)
T cd03014          98 AYGVLIKDLGLLARAVFVIDENGKVIYVELVPEITDEPDYEAAL  141 (143)
T ss_pred             HhCCeeccCCccceEEEEEcCCCeEEEEEECCCcccCCCHHHHh
Confidence            777753      5776666 899999998865   345555544

Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based

>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional

Probab=99.47  E-value=3.8e-13  Score=87.72  Aligned_cols=109  Identities=18%  Similarity=0.214  Sum_probs=79.7

Q ss_pred             cCCCceEEeechhHHHHHHHHHhhCCCEEEEEEeCCC-ChhhhhhhHhHHHHHHhCCCcEEEEEeCCc------------
Q 032502           21 FAGGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATW-CGPCRMIAPFFSELSEKYPSLMFLLVDVDE------------   87 (139)
Q Consensus        21 ~~~~~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~-C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~------------   87 (139)
                      ..|..+|++...+...+.+.+...++|++||+||+.| |+.|....+.|.++++++.++.++.|..|.            
T Consensus        19 ~~G~~~P~f~l~~~~g~~v~l~~~~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~~~~vv~vs~D~~~~~~~f~~~~~   98 (167)
T PRK00522         19 QVGDKAPDFTLVANDLSDVSLADFAGKRKVLNIFPSIDTGVCATSVRKFNQEAAELDNTVVLCISADLPFAQKRFCGAEG   98 (167)
T ss_pred             CCCCCCCCeEEEcCCCcEEehHHhCCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcCCcEEEEEeCCCHHHHHHHHHhCC
Confidence            3455666665444434445566667999999999999 999999999999999998788888888763            


Q ss_pred             -----------chhhhhhCCCccee---------EEEEE-eCCeEEEEEeCC---ChHHHHHHHHH
Q 032502           88 -----------LVEFSTSWDIKATP---------TFFFL-KDGQQVDKLVGA---NKPELQKKVAA  129 (139)
Q Consensus        88 -----------~~~~~~~~~v~~~P---------t~~~~-~~g~~~~~~~g~---~~~~l~~~i~~  129 (139)
                                 ...+++.||+...|         +.+++ ++|+++..+.+.   ...++.+.+..
T Consensus        99 ~~~~~~lsD~~~~~~~~~~gv~~~~~~~~g~~~r~tfvId~~G~I~~~~~~~~~~~~~~~~~~l~~  164 (167)
T PRK00522         99 LENVITLSDFRDHSFGKAYGVAIAEGPLKGLLARAVFVLDENNKVVYSELVPEITNEPDYDAALAA  164 (167)
T ss_pred             CCCceEeecCCccHHHHHhCCeecccccCCceeeEEEEECCCCeEEEEEECCCcCCCCCHHHHHHH
Confidence                       12567788887766         66666 899999988543   44445555444

>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells

Probab=99.46  E-value=1e-13  Score=85.82  Aligned_cols=92  Identities=27%  Similarity=0.447  Sum_probs=71.4

Q ss_pred             CCceEEeechhHHHHHHHHHhhCCCEEEEEEeCC-CChhhhhhhHhHHHHHHhCC--CcEEEEEeCCcc-----------
Q 032502           23 GGNVSLVTTKDIWDQKMSEASKEGKIVIANFSAT-WCGPCRMIAPFFSELSEKYP--SLMFLLVDVDEL-----------   88 (139)
Q Consensus        23 ~~~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~-~C~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~~-----------   88 (139)
                      |..+|++...+...+.+.+....++++||.||+. ||+.|....+.|.++.++++  ++.++.|..+..           
T Consensus         2 G~~~P~f~l~~~~g~~~~l~~l~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~   81 (124)
T PF00578_consen    2 GDKAPDFTLTDSDGKTVSLSDLKGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEYG   81 (124)
T ss_dssp             TSBGGCEEEETTTSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHHT
T ss_pred             cCCCCCcEeECCCCCEEEHHHHCCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccccchhhhhhhhc
Confidence            4445555544444445666667889999999999 99999999999999998876  699999988642           


Q ss_pred             ----------hhhhhhCCCc------ceeEEEEE-eCCeEEEE
Q 032502           89 ----------VEFSTSWDIK------ATPTFFFL-KDGQQVDK  114 (139)
Q Consensus        89 ----------~~~~~~~~v~------~~Pt~~~~-~~g~~~~~  114 (139)
                                ..+.+.|++.      .+|+++++ ++|+++.+
T Consensus        82 ~~~~~~~D~~~~~~~~~~~~~~~~~~~~p~~~lid~~g~I~~~  124 (124)
T PF00578_consen   82 LPFPVLSDPDGELAKAFGIEDEKDTLALPAVFLIDPDGKIRYA  124 (124)
T ss_dssp             CSSEEEEETTSHHHHHTTCEETTTSEESEEEEEEETTSBEEEE
T ss_pred             cccccccCcchHHHHHcCCccccCCceEeEEEEECCCCEEEeC
Confidence                      3467789988      89987777 88888753

Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....

>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.45  E-value=6.9e-13  Score=96.83  Aligned_cols=91  Identities=23%  Similarity=0.488  Sum_probs=79.2

Q ss_pred             hCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCC-cEEEEEeCCcchhhhhhCCCcceeEEEEEeCCeEEEEEeCC-ChH
Q 032502           44 KEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGA-NKP  121 (139)
Q Consensus        44 ~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~-v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~  121 (139)
                      ..+++.+|.||++||++|..+.|.+.++.+.+.+ +.+..||++++.+++..|+|.++||+.+|..|.....+.|. +.+
T Consensus        45 ~~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~~~~~~vd~~~~~~~~~~y~i~gfPtl~~f~~~~~~~~~~~~~~~~  124 (383)
T KOG0191|consen   45 KDDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGKVKIGAVDCDEHKDLCEKYGIQGFPTLKVFRPGKKPIDYSGPRNAE  124 (383)
T ss_pred             ccCCceEEEEECCCCcchhhhchHHHHHHHHhcCceEEEEeCchhhHHHHHhcCCccCcEEEEEcCCCceeeccCcccHH
Confidence            5578999999999999999999999999999887 89999999999999999999999999999888444445555 888


Q ss_pred             HHHHHHHHHhhcc
Q 032502          122 ELQKKVAAAVDSV  134 (139)
Q Consensus       122 ~l~~~i~~~~~~~  134 (139)
                      .+..++...+...
T Consensus       125 ~~~~~~~~~~~~~  137 (383)
T KOG0191|consen  125 SLAEFLIKELEPS  137 (383)
T ss_pred             HHHHHHHHhhccc
Confidence            8888887776543

>PTZ00256 glutathione peroxidase; Provisional

Probab=99.44  E-value=7.1e-13  Score=87.64  Aligned_cols=108  Identities=19%  Similarity=0.207  Sum_probs=76.1

Q ss_pred             ceEEeechhHHHHHHHHHhhCCCEE-EEEEeCCCChhhhhhhHhHHHHHHhCC--CcEEEEEeCCc-------c-h---h
Q 032502           25 NVSLVTTKDIWDQKMSEASKEGKIV-IANFSATWCGPCRMIAPFFSELSEKYP--SLMFLLVDVDE-------L-V---E   90 (139)
Q Consensus        25 ~~~~i~~~~~~~~~~~~~~~~~k~v-lv~f~~~~C~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~-------~-~---~   90 (139)
                      .++++...+...+.+.++..++|++ |+.+|++||+.|+...|.|++++++|.  ++.++.++++.       . .   .
T Consensus        19 ~~p~f~l~d~~G~~vsLs~~~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~~~~~~~~~~~~~~~~   98 (183)
T PTZ00256         19 SFFEFEAIDIDGQLVQLSKFKGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCNQFMEQEPWDEPEIKE   98 (183)
T ss_pred             cccceEeEcCCCCEEeHHHhCCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecccccccCCCCHHHHHH
Confidence            3455443333334456666778865 456699999999999999999999986  58888887531       0 0   0


Q ss_pred             h-hhh------------------------------------CCCcceeE----EEEEeCCeEEEEEeCC-ChHHHHHHHH
Q 032502           91 F-STS------------------------------------WDIKATPT----FFFLKDGQQVDKLVGA-NKPELQKKVA  128 (139)
Q Consensus        91 ~-~~~------------------------------------~~v~~~Pt----~~~~~~g~~~~~~~g~-~~~~l~~~i~  128 (139)
                      + .++                                    +++.++|+    +++.++|+++.++.|. +.+.+.+.|.
T Consensus        99 f~~~~~~~~fpv~~d~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflID~~G~Iv~~~~g~~~~~~l~~~I~  178 (183)
T PTZ00256         99 YVQKKFNVDFPLFQKIEVNGENTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLIDGQGKVVKYFSPKVNPNEMIQDIE  178 (183)
T ss_pred             HHHHhcCCCCCCceEEecCCCCCCHHHHHHHhhCCCCcCccccCcccCcceEEEEECCCCCEEEEECCCCCHHHHHHHHH
Confidence            0 111                                    13447794    6666999999999988 8888999888


Q ss_pred             HHhh
Q 032502          129 AAVD  132 (139)
Q Consensus       129 ~~~~  132 (139)
                      ++++
T Consensus       179 ~ll~  182 (183)
T PTZ00256        179 KLLN  182 (183)
T ss_pred             HHhc
Confidence            8874

>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides

Probab=99.44  E-value=4.2e-13  Score=84.83  Aligned_cols=89  Identities=19%  Similarity=0.231  Sum_probs=69.3

Q ss_pred             HHHHhhCCCEEEEEEe-CCCChhhhhhhHhHHHHHHhCC--CcEEEEEeCCc---------------------chhhhhh
Q 032502           39 MSEASKEGKIVIANFS-ATWCGPCRMIAPFFSELSEKYP--SLMFLLVDVDE---------------------LVEFSTS   94 (139)
Q Consensus        39 ~~~~~~~~k~vlv~f~-~~~C~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~---------------------~~~~~~~   94 (139)
                      +.+...++|+++|+|| +.||+.|....+.|.++.+++.  ++.++.|..+.                     ...+.+.
T Consensus        16 ~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~   95 (140)
T cd03017          16 VSLSDLRGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEKYGLPFPLLSDPDGKLAKA   95 (140)
T ss_pred             EeHHHhCCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCceEEECCccHHHHH
Confidence            3334456899999999 6899999999999999988875  58888887753                     2345777


Q ss_pred             CCCcce---------eEEEEE-eCCeEEEEEeCC-ChHHHHHHH
Q 032502           95 WDIKAT---------PTFFFL-KDGQQVDKLVGA-NKPELQKKV  127 (139)
Q Consensus        95 ~~v~~~---------Pt~~~~-~~g~~~~~~~g~-~~~~l~~~i  127 (139)
                      ||+...         |+++++ ++|+++..+.|. ....+.+.+
T Consensus        96 ~gv~~~~~~~~~~~~p~~~lid~~G~v~~~~~g~~~~~~~~~~~  139 (140)
T cd03017          96 YGVWGEKKKKYMGIERSTFLIDPDGKIVKVWRKVKPKGHAEEVL  139 (140)
T ss_pred             hCCccccccccCCcceeEEEECCCCEEEEEEecCCccchHHHHh
Confidence            888887         887777 789999999998 666665543

The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w

>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin

Probab=99.40  E-value=4.7e-12  Score=87.78  Aligned_cols=93  Identities=18%  Similarity=0.371  Sum_probs=74.3

Q ss_pred             CceEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhhhhhCCCcceeEE
Q 032502           24 GNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTF  103 (139)
Q Consensus        24 ~~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~  103 (139)
                      +.+.++...+.|-..+... .++..|||+||.+.++.|..+...|..|+.+|+.++|+.|.....+ +..+|.+..+||+
T Consensus       125 G~v~ei~~~e~~l~~ie~~-~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~vKFvkI~a~~~~-~~~~f~~~~LPtl  202 (265)
T PF02114_consen  125 GEVYEIDSGEEFLDAIEKE-SKSTWVVVHIYEPGFPRCEIMNSCLECLARKYPEVKFVKIRASKCP-ASENFPDKNLPTL  202 (265)
T ss_dssp             -SEEE--SHHHHHHHCCTS-STT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TTSEEEEEEECGCC-TTTTS-TTC-SEE
T ss_pred             ceEEEccChhhHHHHHhcc-CCCcEEEEEEEeCCCchHHHHHHHHHHHHHhCCceEEEEEehhccC-cccCCcccCCCEE
Confidence            5677887777777766432 3356899999999999999999999999999999999999988766 7889999999999


Q ss_pred             EEEeCCeEEEEEeCC
Q 032502          104 FFLKDGQQVDKLVGA  118 (139)
Q Consensus       104 ~~~~~g~~~~~~~g~  118 (139)
                      ++|++|..+..++|.
T Consensus       203 lvYk~G~l~~~~V~l  217 (265)
T PF02114_consen  203 LVYKNGDLIGNFVGL  217 (265)
T ss_dssp             EEEETTEEEEEECTG
T ss_pred             EEEECCEEEEeEEeh
Confidence            999999999998875

Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.

>smart00594 UAS UAS domain

Probab=99.40  E-value=6.6e-12  Score=77.85  Aligned_cols=97  Identities=15%  Similarity=0.183  Sum_probs=74.5

Q ss_pred             chhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhH---HHHHHhCC-CcEEEEEeCC--cchhhhhhCCCcceeEEE
Q 032502           31 TKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFF---SELSEKYP-SLMFLLVDVD--ELVEFSTSWDIKATPTFF  104 (139)
Q Consensus        31 ~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l---~~~~~~~~-~v~~~~vd~~--~~~~~~~~~~v~~~Pt~~  104 (139)
                      ...+++..+..+..++|+++|+|+++||++|..+...+   .++.+... ++.++.+|.+  +...++.+|++.++|+++
T Consensus        12 ~~gs~~~a~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~eg~~l~~~~~~~~~P~~~   91 (122)
T smart00594       12 YQGSLEAAKQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSEGQRVSQFYKLDSFPYVA   91 (122)
T ss_pred             eeCCHHHHHHHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChhHHHHHHhcCcCCCCEEE
Confidence            45577888888888899999999999999999987643   34444443 4677777765  445689999999999999


Q ss_pred             EE-eCC-----eEEEEEeCC-ChHHHHHHH
Q 032502          105 FL-KDG-----QQVDKLVGA-NKPELQKKV  127 (139)
Q Consensus       105 ~~-~~g-----~~~~~~~g~-~~~~l~~~i  127 (139)
                      ++ .+|     .++.+..|. +.++|...|
T Consensus        92 ~l~~~~g~~~~~~~~~~~G~~~~~~l~~~l  121 (122)
T smart00594       92 IVDPRTGQRVIEWVGVVEGEISPEELMTFL  121 (122)
T ss_pred             EEecCCCceeEEEeccccCCCCHHHHHHhh
Confidence            99 665     356777788 888887765

>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A

Probab=99.38  E-value=1.9e-12  Score=74.79  Aligned_cols=74  Identities=34%  Similarity=0.627  Sum_probs=56.5

Q ss_pred             hHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhH---HHHHHh-CCCcEEEEEeCCcchhhhhhCCCcceeEEEEEe
Q 032502           33 DIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFF---SELSEK-YPSLMFLLVDVDELVEFSTSWDIKATPTFFFLK  107 (139)
Q Consensus        33 ~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l---~~~~~~-~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~  107 (139)
                      .++++.+..+..++|+++|+|+++||++|+.+...+   .++.+. ..++.++.+|.+......... ..++|+++++.
T Consensus         4 ~d~~~al~~A~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~~~~~-~~~~P~~~~ld   81 (82)
T PF13899_consen    4 SDYEEALAEAKKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDPNAQFD-RQGYPTFFFLD   81 (82)
T ss_dssp             SSHHHHHHHHHHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHHHHHHH-HCSSSEEEEEE
T ss_pred             hhHHHHHHHHHHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCChhHHhC-CccCCEEEEeC
Confidence            457788888888999999999999999999998766   444442 236899999998766533222 26699999874

...

>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed

Probab=99.37  E-value=3.6e-12  Score=81.97  Aligned_cols=91  Identities=12%  Similarity=0.167  Sum_probs=66.7

Q ss_pred             HHHHHhhCCCEEEEEEeCC-CChhhhhhhHhHHHHHHhCC--CcEEEEEeCCcc---------------------hhhhh
Q 032502           38 KMSEASKEGKIVIANFSAT-WCGPCRMIAPFFSELSEKYP--SLMFLLVDVDEL---------------------VEFST   93 (139)
Q Consensus        38 ~~~~~~~~~k~vlv~f~~~-~C~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~~---------------------~~~~~   93 (139)
                      .+.+...++|++||+||+. ||+.|....+.+.++++++.  ++.++.|..+..                     ..+.+
T Consensus        22 ~~~l~~~~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~  101 (154)
T PRK09437         22 QVSLTDFQGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDKPEKLSRFAEKELLNFTLLSDEDHQVAE  101 (154)
T ss_pred             EEeHHHhCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCCeEEECCCchHHH
Confidence            3455556789999999965 78899999999999888874  588888887642                     23566


Q ss_pred             hCCCcce------------eEEEEE-eCCeEEEEEeCC-ChHHHHHHHH
Q 032502           94 SWDIKAT------------PTFFFL-KDGQQVDKLVGA-NKPELQKKVA  128 (139)
Q Consensus        94 ~~~v~~~------------Pt~~~~-~~g~~~~~~~g~-~~~~l~~~i~  128 (139)
                      .||+...            |+.+++ ++|+++..+.|. ..+.+.+.++
T Consensus       102 ~~gv~~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~~~~~~~~~  150 (154)
T PRK09437        102 QFGVWGEKKFMGKTYDGIHRISFLIDADGKIEHVFDKFKTSNHHDVVLD  150 (154)
T ss_pred             HhCCCcccccccccccCcceEEEEECCCCEEEEEEcCCCcchhHHHHHH
Confidence            7887543            555555 899999999988 4555444433

>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides

Probab=99.37  E-value=6e-12  Score=82.50  Aligned_cols=92  Identities=21%  Similarity=0.212  Sum_probs=68.1

Q ss_pred             HHHHhhCCCEEEEEEe-CCCChhhhhhhHhHHHHHHhCC--CcEEEEEeCCcc---------------------------
Q 032502           39 MSEASKEGKIVIANFS-ATWCGPCRMIAPFFSELSEKYP--SLMFLLVDVDEL---------------------------   88 (139)
Q Consensus        39 ~~~~~~~~k~vlv~f~-~~~C~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~~---------------------------   88 (139)
                      +.+...++|++||+|| +.||+.|....+.|.++++++.  ++.++.|..|..                           
T Consensus        22 ~~l~~~~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~  101 (173)
T cd03015          22 ISLSDYKGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDSHFSHLAWRNTPRKEGGLGKINFPLLADP  101 (173)
T ss_pred             EehHHhCCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCCHHHHHHHHHhhhhhCCccCcceeEEECC
Confidence            4444456899999999 8999999999999999999985  588888876532                           


Q ss_pred             -hhhhhhCCCc------ceeEEEEE-eCCeEEEEEeCC-----ChHHHHHHHHHH
Q 032502           89 -VEFSTSWDIK------ATPTFFFL-KDGQQVDKLVGA-----NKPELQKKVAAA  130 (139)
Q Consensus        89 -~~~~~~~~v~------~~Pt~~~~-~~g~~~~~~~g~-----~~~~l~~~i~~~  130 (139)
                       ..+.+.|++.      ..|+++++ ++|+++..+.+.     +.+++.+.|+.+
T Consensus       102 ~~~~~~~~gv~~~~~~~~~p~~~lID~~G~I~~~~~~~~~~~~~~~~il~~l~~~  156 (173)
T cd03015         102 KKKISRDYGVLDEEEGVALRGTFIIDPEGIIRHITVNDLPVGRSVDETLRVLDAL  156 (173)
T ss_pred             chhHHHHhCCccccCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence             1235567775      56777777 899999988654     345566666554

The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric

>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

Probab=99.34  E-value=5.3e-12  Score=94.23  Aligned_cols=102  Identities=21%  Similarity=0.426  Sum_probs=82.0

Q ss_pred             EEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhH---HHHHHhCCCcEEEEEeCCcc----hhhhhhCCCcc
Q 032502           27 SLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFF---SELSEKYPSLMFLLVDVDEL----VEFSTSWDIKA   99 (139)
Q Consensus        27 ~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l---~~~~~~~~~v~~~~vd~~~~----~~~~~~~~v~~   99 (139)
                      ..+....+.++.+...  ++|+|+|.||++||-.|+.+.+..   .++..+..++.+..+|.+++    .++.++|++.+
T Consensus       457 q~~s~~~~L~~~la~~--~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~~~p~~~~lLk~~~~~G  534 (569)
T COG4232         457 QPISPLAELDQALAEA--KAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTANDPAITALLKRLGVFG  534 (569)
T ss_pred             hccCCHHHHHHHHHhC--CCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecCCCHHHHHHHHHcCCCC
Confidence            4555555666666433  336999999999999999998865   45566677899999999854    56788999999


Q ss_pred             eeEEEEE-eCCeEEEEEeCC-ChHHHHHHHHHH
Q 032502          100 TPTFFFL-KDGQQVDKLVGA-NKPELQKKVAAA  130 (139)
Q Consensus       100 ~Pt~~~~-~~g~~~~~~~g~-~~~~l~~~i~~~  130 (139)
                      +|++++| .+|++.....|. +.+.+.+++++.
T Consensus       535 ~P~~~ff~~~g~e~~~l~gf~~a~~~~~~l~~~  567 (569)
T COG4232         535 VPTYLFFGPQGSEPEILTGFLTADAFLEHLERA  567 (569)
T ss_pred             CCEEEEECCCCCcCcCCcceecHHHHHHHHHHh
Confidence            9999999 588887778888 999999998775

>TIGR03137 AhpC peroxiredoxin

Probab=99.31  E-value=2e-11  Score=81.05  Aligned_cols=90  Identities=14%  Similarity=0.193  Sum_probs=66.4

Q ss_pred             HHHHhhCCCEEEEEEe-CCCChhhhhhhHhHHHHHHhCC--CcEEEEEeCCcc-------------------------hh
Q 032502           39 MSEASKEGKIVIANFS-ATWCGPCRMIAPFFSELSEKYP--SLMFLLVDVDEL-------------------------VE   90 (139)
Q Consensus        39 ~~~~~~~~k~vlv~f~-~~~C~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~~-------------------------~~   90 (139)
                      +.+....+|++||+|| +.||+.|....+.|.++.+++.  ++.++.|..|..                         ..
T Consensus        24 ~sl~d~~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~l~fpllsD~~~~  103 (187)
T TIGR03137        24 VTDEDVKGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDPTGV  103 (187)
T ss_pred             ecHHHHCCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHhhhhhccCcceeEEECCccH
Confidence            4444467899999999 9999999999999999988874  577888776531                         23


Q ss_pred             hhhhCCCc------ceeEEEEE-eCCeEEEEEeCC-----ChHHHHHHHH
Q 032502           91 FSTSWDIK------ATPTFFFL-KDGQQVDKLVGA-----NKPELQKKVA  128 (139)
Q Consensus        91 ~~~~~~v~------~~Pt~~~~-~~g~~~~~~~g~-----~~~~l~~~i~  128 (139)
                      +++.||+.      ..|+.+++ ++|+++..+.+.     ..+++.+.|+
T Consensus       104 ~a~~~gv~~~~~g~~~p~tfiID~~G~I~~~~~~~~~~~~~~~~ll~~l~  153 (187)
T TIGR03137       104 LTRNFGVLIEEAGLADRGTFVIDPEGVIQAVEITDNGIGRDASELLRKIK  153 (187)
T ss_pred             HHHHhCCcccCCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHH
Confidence            56678875      45866666 899999887542     4555555553

This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.

>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]

Probab=99.31  E-value=2.6e-11  Score=78.88  Aligned_cols=95  Identities=21%  Similarity=0.333  Sum_probs=87.1

Q ss_pred             ccCCCceEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhhhhhCCCcc
Q 032502           20 EFAGGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKA   99 (139)
Q Consensus        20 ~~~~~~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~   99 (139)
                      ...++.+..+.+..+|-+..    .+...||++||.+.-..|+.|..+|+.+++.+.+.+|+.||....|-++.+++|..
T Consensus        62 ~~GhG~y~ev~~Ekdf~~~~----~kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~eTrFikvnae~~PFlv~kL~IkV  137 (211)
T KOG1672|consen   62 SKGHGEYEEVASEKDFFEEV----KKSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVETRFIKVNAEKAPFLVTKLNIKV  137 (211)
T ss_pred             HcCCceEEEeccHHHHHHHh----hcCceEEEEEEcCCCcceehHHHHHHHHHHhcccceEEEEecccCceeeeeeeeeE
Confidence            35678889999888887666    45678899999999999999999999999999999999999999999999999999


Q ss_pred             eeEEEEEeCCeEEEEEeCC
Q 032502          100 TPTFFFLKDGQQVDKLVGA  118 (139)
Q Consensus       100 ~Pt~~~~~~g~~~~~~~g~  118 (139)
                      +|++.+|++|+...++.|+
T Consensus       138 LP~v~l~k~g~~~D~iVGF  156 (211)
T KOG1672|consen  138 LPTVALFKNGKTVDYVVGF  156 (211)
T ss_pred             eeeEEEEEcCEEEEEEeeH
Confidence            9999999999999999887

>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]

Probab=99.31  E-value=2.5e-12  Score=95.36  Aligned_cols=102  Identities=19%  Similarity=0.438  Sum_probs=75.8

Q ss_pred             EeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCC----cEEEEEeCC--cchhhhhhCCCccee
Q 032502           28 LVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS----LMFLLVDVD--ELVEFSTSWDIKATP  101 (139)
Q Consensus        28 ~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~----v~~~~vd~~--~~~~~~~~~~v~~~P  101 (139)
                      ...+.++|+..+...   .+-.+|.||++||++|+.+.|.+++++++...    +.+..|||.  .|..+|+.|+|.++|
T Consensus        42 i~Ld~~tf~~~v~~~---~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef~V~~~P  118 (606)
T KOG1731|consen   42 IELDVDTFNAAVFGS---RKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREFSVSGYP  118 (606)
T ss_pred             EEeehhhhHHHhccc---chhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhHhhcCCCCCc
Confidence            334778888877533   45679999999999999999999999988753    888889995  688999999999999


Q ss_pred             EEEEEeCC----eEEEEEeCC-ChHHHHHHHHHHhh
Q 032502          102 TFFFLKDG----QQVDKLVGA-NKPELQKKVAAAVD  132 (139)
Q Consensus       102 t~~~~~~g----~~~~~~~g~-~~~~l~~~i~~~~~  132 (139)
                      ++-+|+.+    ..-..+.|. ...++.+.+.+.+.
T Consensus       119 tlryf~~~~~~~~~G~~~~~~~~~~ei~~~l~~~la  154 (606)
T KOG1731|consen  119 TLRYFPPDSQNKTDGSDVSGPVIPSEIRDQLIRTLA  154 (606)
T ss_pred             eeeecCCccccCcCCCcccCCcchhhHHHHHHHHHH
Confidence            99999432    111223343 45556655555444

>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE

Probab=99.31  E-value=1.3e-11  Score=78.75  Aligned_cols=83  Identities=18%  Similarity=0.222  Sum_probs=62.2

Q ss_pred             HHHHHHHhhCC-CEEEEEEe-CCCChhhhhhhHhHHHHHHhCC--CcEEEEEeCCc---------------------c--
Q 032502           36 DQKMSEASKEG-KIVIANFS-ATWCGPCRMIAPFFSELSEKYP--SLMFLLVDVDE---------------------L--   88 (139)
Q Consensus        36 ~~~~~~~~~~~-k~vlv~f~-~~~C~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~---------------------~--   88 (139)
                      .+.+.+...++ ++++|.|| ++||+.|....+.+.++.+++.  ++.++.|..+.                     .  
T Consensus        17 g~~v~l~~~~g~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~D~~~~   96 (149)
T cd03018          17 GQEVRLSEFRGRKPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDSPFSLRAWAEENGLTFPLLSDFWPH   96 (149)
T ss_pred             CCEEeHHHHcCCCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCCHHHHHHHHHhcCCCceEecCCCch
Confidence            33455555566 88888888 8999999999999999998885  58888887653                     2  


Q ss_pred             hhhhhhCCCcc----ee--EEEEE-eCCeEEEEEeCC
Q 032502           89 VEFSTSWDIKA----TP--TFFFL-KDGQQVDKLVGA  118 (139)
Q Consensus        89 ~~~~~~~~v~~----~P--t~~~~-~~g~~~~~~~g~  118 (139)
                      ..+.+.|++..    +|  +++++ ++|+++..+.|.
T Consensus        97 ~~~~~~~g~~~~~~~~~~~~~~lid~~G~v~~~~~~~  133 (149)
T cd03018          97 GEVAKAYGVFDEDLGVAERAVFVIDRDGIIRYAWVSD  133 (149)
T ss_pred             hHHHHHhCCccccCCCccceEEEECCCCEEEEEEecC
Confidence            44566788763    33  55555 899999988876

AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.

>PF13728 TraF: F plasmid transfer operon protein

Probab=99.28  E-value=1.4e-10  Score=78.33  Aligned_cols=83  Identities=20%  Similarity=0.346  Sum_probs=68.7

Q ss_pred             hCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCC-----------cchhhhhhCCCcceeEEEEE-eCC-e
Q 032502           44 KEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVD-----------ELVEFSTSWDIKATPTFFFL-KDG-Q  110 (139)
Q Consensus        44 ~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~-----------~~~~~~~~~~v~~~Pt~~~~-~~g-~  110 (139)
                      ..++..|++||.+.|++|+.+.|.+..++++| ++.++.|+.|           .+..++++|||..+|+++++ .++ +
T Consensus       118 la~~~gL~~F~~~~C~~C~~~~pil~~~~~~y-g~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~Lv~~~~~~  196 (215)
T PF13728_consen  118 LAQKYGLFFFYRSDCPYCQQQAPILQQFADKY-GFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFLVNPNTKK  196 (215)
T ss_pred             HhhCeEEEEEEcCCCchhHHHHHHHHHHHHHh-CCEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEEEECCCCe
Confidence            35789999999999999999999999999999 7777777777           35778999999999998888 444 4


Q ss_pred             EEEEEeCC-ChHHHHHHH
Q 032502          111 QVDKLVGA-NKPELQKKV  127 (139)
Q Consensus       111 ~~~~~~g~-~~~~l~~~i  127 (139)
                      ..-...|. +.++|.+.|
T Consensus       197 ~~pv~~G~~s~~~L~~ri  214 (215)
T PF13728_consen  197 WYPVSQGFMSLDELEDRI  214 (215)
T ss_pred             EEEEeeecCCHHHHHHhh
Confidence            44455677 888887654

>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.25  E-value=2e-10  Score=72.36  Aligned_cols=91  Identities=19%  Similarity=0.343  Sum_probs=73.6

Q ss_pred             HHHhhCCCEEEEEEeCCCChhhhhhhHhH---HHHHHhCC-CcEEEEEeCCc----------------chhhhhhCCCcc
Q 032502           40 SEASKEGKIVIANFSATWCGPCRMIAPFF---SELSEKYP-SLMFLLVDVDE----------------LVEFSTSWDIKA   99 (139)
Q Consensus        40 ~~~~~~~k~vlv~f~~~~C~~C~~~~~~l---~~~~~~~~-~v~~~~vd~~~----------------~~~~~~~~~v~~   99 (139)
                      .++...+|..++.|.++.|++|..+...+   .++.+.+. ++.++.+++..                ..+++..|+|++
T Consensus        36 ksi~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vrs  115 (182)
T COG2143          36 KSISPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVRS  115 (182)
T ss_pred             HhcCccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhcccc
Confidence            34446789999999999999999998766   55555554 47888887742                357899999999


Q ss_pred             eeEEEEE-eCCeEEEEEeCC-ChHHHHHHHHHH
Q 032502          100 TPTFFFL-KDGQQVDKLVGA-NKPELQKKVAAA  130 (139)
Q Consensus       100 ~Pt~~~~-~~g~~~~~~~g~-~~~~l~~~i~~~  130 (139)
                      +||++++ ++|+-+....|. .++++...+.-.
T Consensus       116 tPtfvFfdk~Gk~Il~lPGY~ppe~Fl~vlkYV  148 (182)
T COG2143         116 TPTFVFFDKTGKTILELPGYMPPEQFLAVLKYV  148 (182)
T ss_pred             CceEEEEcCCCCEEEecCCCCCHHHHHHHHHHH
Confidence            9999999 889999999999 888888766544

>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A

Probab=99.25  E-value=8.6e-11  Score=73.36  Aligned_cols=84  Identities=27%  Similarity=0.515  Sum_probs=56.8

Q ss_pred             hCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhhhhhC---CCcceeEEEEE-eCCeEEEEEeCCC
Q 032502           44 KEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSW---DIKATPTFFFL-KDGQQVDKLVGAN  119 (139)
Q Consensus        44 ~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~---~v~~~Pt~~~~-~~g~~~~~~~g~~  119 (139)
                      ...+..++.|..+|||.|....|.|.++++..|++.+-.+..|++.++.++|   |...+|+++++ ++|+.+.++... 
T Consensus        39 ~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p~i~~~~i~rd~~~el~~~~lt~g~~~IP~~I~~d~~~~~lg~wger-  117 (129)
T PF14595_consen   39 IQKPYNILVITETWCGDCARNVPVLAKIAEANPNIEVRIILRDENKELMDQYLTNGGRSIPTFIFLDKDGKELGRWGER-  117 (129)
T ss_dssp             --S-EEEEEE--TT-HHHHHHHHHHHHHHHH-TTEEEEEE-HHHHHHHTTTTTT-SS--SSEEEEE-TT--EEEEEESS-
T ss_pred             cCCCcEEEEEECCCchhHHHHHHHHHHHHHhCCCCeEEEEEecCChhHHHHHHhCCCeecCEEEEEcCCCCEeEEEcCC-
Confidence            3456788889999999999999999999999988888888889888887766   57899999999 678988887544 


Q ss_pred             hHHHHHHHH
Q 032502          120 KPELQKKVA  128 (139)
Q Consensus       120 ~~~l~~~i~  128 (139)
                      +..+.+++.
T Consensus       118 P~~~~~~~~  126 (129)
T PF14595_consen  118 PKEVQELVD  126 (129)
T ss_dssp             -HHHH----
T ss_pred             CHHHhhccc
Confidence            444555444

>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.24  E-value=7.2e-11  Score=86.32  Aligned_cols=100  Identities=19%  Similarity=0.402  Sum_probs=82.8

Q ss_pred             chhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCC---CcEEEEEeCCcchhhhhhCCCcceeEEEEEe
Q 032502           31 TKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP---SLMFLLVDVDELVEFSTSWDIKATPTFFFLK  107 (139)
Q Consensus        31 ~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~---~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~  107 (139)
                      ...++...+.   ..+...+|.||+|||++|+.+.|.+.+++..+.   .+.+..+|++.+..++.+++|.++||+.+|+
T Consensus       150 ~~~~~~~~~~---~~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~~~~~~~~~~~v~~~Pt~~~f~  226 (383)
T KOG0191|consen  150 TKDNFDETVK---DSDADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDATVHKSLASRLEVRGYPTLKLFP  226 (383)
T ss_pred             cccchhhhhh---ccCcceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccchHHHHhhhhcccCCceEEEec
Confidence            4444544443   346788999999999999999999999998874   4888999999999999999999999999998


Q ss_pred             CCeE-EEEEeCC-ChHHHHHHHHHHhhc
Q 032502          108 DGQQ-VDKLVGA-NKPELQKKVAAAVDS  133 (139)
Q Consensus       108 ~g~~-~~~~~g~-~~~~l~~~i~~~~~~  133 (139)
                      +|.. ...+.+. +.+.+..++......
T Consensus       227 ~~~~~~~~~~~~R~~~~i~~~v~~~~~~  254 (383)
T KOG0191|consen  227 PGEEDIYYYSGLRDSDSIVSFVEKKERR  254 (383)
T ss_pred             CCCcccccccccccHHHHHHHHHhhcCC
Confidence            7777 5556666 899999999887665

>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family

Probab=99.24  E-value=9.6e-11  Score=65.76  Aligned_cols=68  Identities=16%  Similarity=0.457  Sum_probs=53.8

Q ss_pred             EEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchh----hhhhCCCcceeEEEEEeCCeEEEEEeCCChHHHHH
Q 032502           50 IANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVE----FSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQK  125 (139)
Q Consensus        50 lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~----~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~l~~  125 (139)
                      +..|+++||++|+.+.+.|++     .++.+..+|+++++.    +.+.+++.++|++++.  |+.   ..|.+.+.|.+
T Consensus         2 i~lf~~~~C~~C~~~~~~l~~-----~~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~--~~~---~~g~~~~~i~~   71 (74)
T TIGR02196         2 VKVYTTPWCPPCKKAKEYLTS-----KGIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIG--HKI---IVGFDPEKLDQ   71 (74)
T ss_pred             EEEEcCCCChhHHHHHHHHHH-----CCCeEEEEeccCCHHHHHHHHHHhCCCcccEEEEC--CEE---EeeCCHHHHHH
Confidence            567999999999999988865     268888999987654    4567999999999984  654   55777787777


Q ss_pred             HH
Q 032502          126 KV  127 (139)
Q Consensus       126 ~i  127 (139)
                      +|
T Consensus        72 ~i   73 (74)
T TIGR02196        72 LL   73 (74)
T ss_pred             Hh
Confidence            65

This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.

>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B

Probab=99.23  E-value=2.5e-10  Score=64.97  Aligned_cols=71  Identities=20%  Similarity=0.460  Sum_probs=57.7

Q ss_pred             EEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhhhhhCCCcceeEEEEEeCCeEEEEEeC-C-ChHHHHHHHH
Q 032502           52 NFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVG-A-NKPELQKKVA  128 (139)
Q Consensus        52 ~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g-~-~~~~l~~~i~  128 (139)
                      .+++++|++|..+...++++...+ ++.+-.++....+++ .+|||.++|++++  ||+.+.  .| . +.++|..+|+
T Consensus         4 ~v~~~~C~~C~~~~~~~~~~~~~~-~i~~ei~~~~~~~~~-~~ygv~~vPalvI--ng~~~~--~G~~p~~~el~~~l~   76 (76)
T PF13192_consen    4 KVFSPGCPYCPELVQLLKEAAEEL-GIEVEIIDIEDFEEI-EKYGVMSVPALVI--NGKVVF--VGRVPSKEELKELLE   76 (76)
T ss_dssp             EEECSSCTTHHHHHHHHHHHHHHT-TEEEEEEETTTHHHH-HHTT-SSSSEEEE--TTEEEE--ESS--HHHHHHHHHH
T ss_pred             EEeCCCCCCcHHHHHHHHHHHHhc-CCeEEEEEccCHHHH-HHcCCCCCCEEEE--CCEEEE--EecCCCHHHHHHHhC
Confidence            347888999999999999999998 588888888766776 9999999999988  888654  47 4 7888888764

...

>PRK10606 btuE putative glutathione peroxidase; Provisional

Probab=99.21  E-value=4.6e-11  Score=78.77  Aligned_cols=48  Identities=10%  Similarity=0.187  Sum_probs=40.1

Q ss_pred             HHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCC--CcEEEEEeCC
Q 032502           38 KMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP--SLMFLLVDVD   86 (139)
Q Consensus        38 ~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~--~v~~~~vd~~   86 (139)
                      .+.++..++|++||.|||+||+.|. ..+.|++++++|.  ++.++.+.++
T Consensus        17 ~v~Ls~~~GKvvLVvf~AS~C~~~~-q~~~L~~L~~~y~~~gl~Vlg~p~n   66 (183)
T PRK10606         17 VTTLEKYAGNVLLIVNVASKCGLTP-QYEQLENIQKAWADQGFVVLGFPCN   66 (183)
T ss_pred             EEeHHHhCCCEEEEEEEeCCCCCcH-HHHHHHHHHHHHhhCCeEEEEeecc
Confidence            3455567899999999999999996 5889999999986  5888888774

>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

Probab=99.21  E-value=1.1e-10  Score=70.50  Aligned_cols=84  Identities=38%  Similarity=0.783  Sum_probs=69.1

Q ss_pred             CCEEEEEEeCCCChhhhhhhHhHHHHHHhCCC-cEEEEEeCC-cchhhhhhCC--CcceeEEEEEeCCeEEEEEeC--C-
Q 032502           46 GKIVIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVD-ELVEFSTSWD--IKATPTFFFLKDGQQVDKLVG--A-  118 (139)
Q Consensus        46 ~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~-v~~~~vd~~-~~~~~~~~~~--v~~~Pt~~~~~~g~~~~~~~g--~-  118 (139)
                      ++++++.||++||+.|+.+.|.+.++.+++.. +.++.+|.. ....+...|+  +..+|+++++.++..+....+  . 
T Consensus        32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~  111 (127)
T COG0526          32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDENPDLAAEFGVAVRSIPTLLLFKDGKEVDRLVGGKVL  111 (127)
T ss_pred             CceEEEEEEcCcCHHHHhhchhHHHHHHHhcCCcEEEEEECCCCChHHHHHHhhhhccCCeEEEEeCcchhhhhhhcccC
Confidence            78999999999999999999999999999984 999999997 7889999999  999999998888776555444  3 


Q ss_pred             ChHHHHHHHHH
Q 032502          119 NKPELQKKVAA  129 (139)
Q Consensus       119 ~~~~l~~~i~~  129 (139)
                      ....+.....+
T Consensus       112 ~~~~~~~~~~~  122 (127)
T COG0526         112 PKEALIDALGE  122 (127)
T ss_pred             CHHHHHHHhcc
Confidence            44555444433

>PRK13190 putative peroxiredoxin; Provisional

Probab=99.20  E-value=2.1e-10  Score=76.97  Aligned_cols=94  Identities=17%  Similarity=0.208  Sum_probs=69.7

Q ss_pred             HHHHhhCCCEEEE-EEeCCCChhhhhhhHhHHHHHHhCC--CcEEEEEeCCc---------------------------c
Q 032502           39 MSEASKEGKIVIA-NFSATWCGPCRMIAPFFSELSEKYP--SLMFLLVDVDE---------------------------L   88 (139)
Q Consensus        39 ~~~~~~~~k~vlv-~f~~~~C~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~---------------------------~   88 (139)
                      +.+....+|.++| .||+.||+.|....+.|.++++++.  ++.++.+..|.                           +
T Consensus        20 v~l~d~~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~   99 (202)
T PRK13190         20 IDLSKYKGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADID   99 (202)
T ss_pred             EeHHHhCCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCC
Confidence            4444456887766 5789999999999999999988885  58888887763                           1


Q ss_pred             hhhhhhCCCc------ceeEEEEE-eCCeEEEEEe-----CCChHHHHHHHHHHhh
Q 032502           89 VEFSTSWDIK------ATPTFFFL-KDGQQVDKLV-----GANKPELQKKVAAAVD  132 (139)
Q Consensus        89 ~~~~~~~~v~------~~Pt~~~~-~~g~~~~~~~-----g~~~~~l~~~i~~~~~  132 (139)
                      ..+++.||+.      .+|+.+++ ++|++.....     |.+.+++.+.|+.+..
T Consensus       100 ~~ia~~ygv~~~~~g~~~p~~fiId~~G~I~~~~~~~~~~gr~~~ellr~l~~l~~  155 (202)
T PRK13190        100 KELAREYNLIDENSGATVRGVFIIDPNQIVRWMIYYPAETGRNIDEIIRITKALQV  155 (202)
T ss_pred             hHHHHHcCCccccCCcEEeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHhhh
Confidence            2346677874      58987777 7999887652     3378888888877654

>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified

Probab=99.19  E-value=5.9e-11  Score=74.89  Aligned_cols=79  Identities=24%  Similarity=0.309  Sum_probs=61.2

Q ss_pred             HHHhhCCCEEEEEEe-CCCChhhhhhhHhHHHHHHhCC--CcEEEEEeCCcc----------------------hhhhhh
Q 032502           40 SEASKEGKIVIANFS-ATWCGPCRMIAPFFSELSEKYP--SLMFLLVDVDEL----------------------VEFSTS   94 (139)
Q Consensus        40 ~~~~~~~k~vlv~f~-~~~C~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~~----------------------~~~~~~   94 (139)
                      .+....+++++|+|| +.||+.|....+.|.++++++.  ++.++.|..+..                      ..+.+.
T Consensus        16 ~l~~~~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~   95 (140)
T cd02971          16 SLSDFKGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDSPFSHKAWAEKEGGLNFPLLSDPDGEFAKA   95 (140)
T ss_pred             ehHHhCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcccCCCceEEECCChHHHHH
Confidence            333346899999999 7899999999999999998873  688888877532                      235667


Q ss_pred             CCCccee---------EEEEE-eCCeEEEEEeCC
Q 032502           95 WDIKATP---------TFFFL-KDGQQVDKLVGA  118 (139)
Q Consensus        95 ~~v~~~P---------t~~~~-~~g~~~~~~~g~  118 (139)
                      ||+...|         +++++ ++|+++..+.|.
T Consensus        96 ~g~~~~~~~~~~~~~p~~~lid~~g~i~~~~~~~  129 (140)
T cd02971          96 YGVLIEKSAGGGLAARATFIIDPDGKIRYVEVEP  129 (140)
T ss_pred             cCCccccccccCceeEEEEEECCCCcEEEEEecC
Confidence            7877665         55555 789999998887

PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a

>KOG3414 consensus Component of the U4/U6

Probab=99.19  E-value=9.5e-10  Score=66.78  Aligned_cols=107  Identities=20%  Similarity=0.369  Sum_probs=87.1

Q ss_pred             eEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCC-cEEEEEeCCcchhhhhhCCCcceeEEE
Q 032502           26 VSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVDELVEFSTSWDIKATPTFF  104 (139)
Q Consensus        26 ~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~-v~~~~vd~~~~~~~~~~~~v~~~Pt~~  104 (139)
                      +|.+.+....++.+..  .+.+.+|+.|...|.+.|..|...|.+.+++..+ ..++.+|+++-+++.+.|++...|+++
T Consensus         5 Lp~L~s~~~VdqaI~~--t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnfa~IylvdideV~~~~~~~~l~~p~tvm   82 (142)
T KOG3414|consen    5 LPTLHSGWEVDQAILS--TEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNFAVIYLVDIDEVPDFVKMYELYDPPTVM   82 (142)
T ss_pred             ccccccHHHHHHHHhc--ccceEEEEEecCCCCchHhhHHHHHHHHHHHHhhceEEEEEecchhhhhhhhhcccCCceEE
Confidence            5677788888887753  3579999999999999999999999999999887 778889999999999999999999999


Q ss_pred             EEeCCeEEEEE---------eCC--ChHHHHHHHHHHhhcc
Q 032502          105 FLKDGQQVDKL---------VGA--NKPELQKKVAAAVDSV  134 (139)
Q Consensus       105 ~~~~g~~~~~~---------~g~--~~~~l~~~i~~~~~~~  134 (139)
                      +|-+++-+...         .+.  +.+++.+.++-+-..+
T Consensus        83 fFfn~kHmkiD~gtgdn~Kin~~~~~kq~~Idiie~iyRga  123 (142)
T KOG3414|consen   83 FFFNNKHMKIDLGTGDNNKINFAFEDKQEFIDIIETIYRGA  123 (142)
T ss_pred             EEEcCceEEEeeCCCCCceEEEEeccHHHHHHHHHHHHHhh
Confidence            99766655432         233  6777888777664443

U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]

>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF

Probab=99.18  E-value=1.3e-09  Score=75.14  Aligned_cols=90  Identities=12%  Similarity=0.219  Sum_probs=73.1

Q ss_pred             hCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcc-----------hhhhhhCCCcceeEEEEE-eC-Ce
Q 032502           44 KEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDEL-----------VEFSTSWDIKATPTFFFL-KD-GQ  110 (139)
Q Consensus        44 ~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~-----------~~~~~~~~v~~~Pt~~~~-~~-g~  110 (139)
                      ..++..|++||...|++|+.+.|.+..++++| ++.++.|++|..           ...++++|+..+|+++++ .+ ++
T Consensus       148 la~~~gL~fFy~~~C~~C~~~apil~~fa~~y-gi~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~Lv~~~t~~  226 (256)
T TIGR02739       148 LSQSYGLFFFYRGKSPISQKMAPVIQAFAKEY-GISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYLVNPKSQK  226 (256)
T ss_pred             HHhceeEEEEECCCCchhHHHHHHHHHHHHHh-CCeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEEEECCCCc
Confidence            34668899999999999999999999999999 577777777643           457889999999998888 55 44


Q ss_pred             EEEEEeCC-ChHHHHHHHHHHhhcc
Q 032502          111 QVDKLVGA-NKPELQKKVAAAVDSV  134 (139)
Q Consensus       111 ~~~~~~g~-~~~~l~~~i~~~~~~~  134 (139)
                      ..-...|. +.++|.+.|..+...-
T Consensus       227 ~~pv~~G~iS~deL~~Ri~~v~~~f  251 (256)
T TIGR02739       227 MSPLAYGFISQDELKERILNVLTQF  251 (256)
T ss_pred             EEEEeeccCCHHHHHHHHHHHHhcc
Confidence            44455577 9999999888876654

This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.

>TIGR02200 GlrX_actino Glutaredoxin-like protein

Probab=99.16  E-value=3.3e-10  Score=64.32  Aligned_cols=70  Identities=21%  Similarity=0.426  Sum_probs=51.2

Q ss_pred             EEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhhhhh-----CCCcceeEEEEEeCCeEEEEEeCCChHHHH
Q 032502           50 IANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTS-----WDIKATPTFFFLKDGQQVDKLVGANKPELQ  124 (139)
Q Consensus        50 lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~-----~~v~~~Pt~~~~~~g~~~~~~~g~~~~~l~  124 (139)
                      ++.||++||++|+.+++.|.++     ++.+..+|+++++.....     +++.++|++ ++.+|+.+.   ..+..++.
T Consensus         2 v~ly~~~~C~~C~~~~~~L~~~-----~~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i-~~~~g~~l~---~~~~~~~~   72 (77)
T TIGR02200         2 ITVYGTTWCGYCAQLMRTLDKL-----GAAYEWVDIEEDEGAADRVVSVNNGNMTVPTV-KFADGSFLT---NPSAAQVK   72 (77)
T ss_pred             EEEEECCCChhHHHHHHHHHHc-----CCceEEEeCcCCHhHHHHHHHHhCCCceeCEE-EECCCeEec---CCCHHHHH
Confidence            5679999999999999988766     556667888877665555     489999997 467776543   44556665


Q ss_pred             HHHH
Q 032502          125 KKVA  128 (139)
Q Consensus       125 ~~i~  128 (139)
                      ..|.
T Consensus        73 ~~l~   76 (77)
T TIGR02200        73 AKLQ   76 (77)
T ss_pred             HHhh
Confidence            5543

This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.

>PRK15000 peroxidase; Provisional

Probab=99.16  E-value=5.2e-10  Score=74.96  Aligned_cols=87  Identities=21%  Similarity=0.266  Sum_probs=67.5

Q ss_pred             CCCEEEEEEeC-CCChhhhhhhHhHHHHHHhCC--CcEEEEEeCCcc----------------------------hhhhh
Q 032502           45 EGKIVIANFSA-TWCGPCRMIAPFFSELSEKYP--SLMFLLVDVDEL----------------------------VEFST   93 (139)
Q Consensus        45 ~~k~vlv~f~~-~~C~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~~----------------------------~~~~~   93 (139)
                      ++|++||+||. .||+.|....+.|.++++++.  ++.++.+..|..                            ..+++
T Consensus        33 ~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia~  112 (200)
T PRK15000         33 NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREIQK  112 (200)
T ss_pred             CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcHHHH
Confidence            68999999998 599999999999999999986  588888887732                            12455


Q ss_pred             hCCCc------ceeEEEEE-eCCeEEEEEeCC-----ChHHHHHHHHHHh
Q 032502           94 SWDIK------ATPTFFFL-KDGQQVDKLVGA-----NKPELQKKVAAAV  131 (139)
Q Consensus        94 ~~~v~------~~Pt~~~~-~~g~~~~~~~g~-----~~~~l~~~i~~~~  131 (139)
                      .||+.      .+|+.+++ ++|+++....+.     +.+++.+.|+.+.
T Consensus       113 ~ygv~~~~~g~~~r~tfiID~~G~I~~~~~~~~~~gr~~~eilr~l~al~  162 (200)
T PRK15000        113 AYGIEHPDEGVALRGSFLIDANGIVRHQVVNDLPLGRNIDEMLRMVDALQ  162 (200)
T ss_pred             HcCCccCCCCcEEeEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHhh
Confidence            67876      68877777 799999887653     5667777666543

>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional

Probab=99.15  E-value=9.6e-10  Score=72.87  Aligned_cols=92  Identities=18%  Similarity=0.196  Sum_probs=69.8

Q ss_pred             HHHhhCCCEEEEEEe-CCCChhhhhhhHhHHHHHHhCC--CcEEEEEeCCc-------------------------chhh
Q 032502           40 SEASKEGKIVIANFS-ATWCGPCRMIAPFFSELSEKYP--SLMFLLVDVDE-------------------------LVEF   91 (139)
Q Consensus        40 ~~~~~~~k~vlv~f~-~~~C~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~-------------------------~~~~   91 (139)
                      .+....+|++||+|| +.||+.|....+.|.++++++.  ++.++.|..|.                         +..+
T Consensus        25 ~L~d~~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~i  104 (187)
T PRK10382         25 TEKDTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGAL  104 (187)
T ss_pred             EHHHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchHH
Confidence            334457899999999 9999999999999999999985  58888887763                         2345


Q ss_pred             hhhCCCc----ce--eEEEEE-eCCeEEEEEeC-----CChHHHHHHHHHHh
Q 032502           92 STSWDIK----AT--PTFFFL-KDGQQVDKLVG-----ANKPELQKKVAAAV  131 (139)
Q Consensus        92 ~~~~~v~----~~--Pt~~~~-~~g~~~~~~~g-----~~~~~l~~~i~~~~  131 (139)
                      ++.||+.    ++  |+.+++ ++|+++..+..     .+.+++.+.|+.+-
T Consensus       105 a~~ygv~~~~~g~~~r~tfIID~~G~I~~~~~~~~~~~~~~~eil~~l~alq  156 (187)
T PRK10382        105 TRNFDNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQ  156 (187)
T ss_pred             HHHcCCCcccCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHhhh
Confidence            7788873    55  876666 89999887643     26777777776554

>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold

Probab=99.15  E-value=1.1e-10  Score=73.96  Aligned_cols=47  Identities=19%  Similarity=0.378  Sum_probs=38.8

Q ss_pred             HHHhhCCCEEEEEEeCCCChh-hhhhhHhHHHHHHhCCC-----cEEEEEeCC
Q 032502           40 SEASKEGKIVIANFSATWCGP-CRMIAPFFSELSEKYPS-----LMFLLVDVD   86 (139)
Q Consensus        40 ~~~~~~~k~vlv~f~~~~C~~-C~~~~~~l~~~~~~~~~-----v~~~~vd~~   86 (139)
                      .+...+++++||.||++||+. |....+.+.++++++.+     +.++.|..|
T Consensus        16 ~l~~~~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d   68 (142)
T cd02968          16 TLSDLKGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVD   68 (142)
T ss_pred             chHHhCCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEEC
Confidence            333346899999999999997 99999999999988852     888888764

Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti

>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs

Probab=99.14  E-value=1.9e-10  Score=73.21  Aligned_cols=71  Identities=17%  Similarity=0.264  Sum_probs=53.6

Q ss_pred             CEEEEEEeCCCChhhhhhhHhHHHHHHhCC--CcEEEEEeCCcc---------------------hhhhhhCCCc-----
Q 032502           47 KIVIANFSATWCGPCRMIAPFFSELSEKYP--SLMFLLVDVDEL---------------------VEFSTSWDIK-----   98 (139)
Q Consensus        47 k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~~---------------------~~~~~~~~v~-----   98 (139)
                      +.+|++|++.||+.|+...+.|.++++++.  ++.++.|..+..                     ..+.+.||+.     
T Consensus        25 ~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~~g~~~~~~~  104 (149)
T cd02970          25 PVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESPEKLEAFDKGKFLPFPVYADPDRKLYRALGLVRSLPW  104 (149)
T ss_pred             CEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCHHHHHHHHHhcCCCCeEEECCchhHHHHcCceecCcH
Confidence            344554569999999999999999999884  688888887642                     3456677773     


Q ss_pred             ------------------------ceeEEEEE-eCCeEEEEEeC
Q 032502           99 ------------------------ATPTFFFL-KDGQQVDKLVG  117 (139)
Q Consensus        99 ------------------------~~Pt~~~~-~~g~~~~~~~g  117 (139)
                                              ..|+.+++ ++|+++..+.|
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~fvid~~g~i~~~~~~  148 (149)
T cd02970         105 SNTPRALWKNAAIGFRGNDEGDGLQLPGVFVIGPDGTILFAHVD  148 (149)
T ss_pred             HHHHHHHhhCcccccccCCCCcccccceEEEECCCCeEEEEecC
Confidence                                    68877666 78888877655

Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.

>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins

Probab=99.14  E-value=4.3e-10  Score=72.31  Aligned_cols=96  Identities=20%  Similarity=0.336  Sum_probs=59.5

Q ss_pred             HHHHHHhhCCCEEEEEEeCCCChhhhhhhH-hH--HHHHHhCC-CcEEEEEeCCcchhhhhhC--------CCcceeEEE
Q 032502           37 QKMSEASKEGKIVIANFSATWCGPCRMIAP-FF--SELSEKYP-SLMFLLVDVDELVEFSTSW--------DIKATPTFF  104 (139)
Q Consensus        37 ~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~-~l--~~~~~~~~-~v~~~~vd~~~~~~~~~~~--------~v~~~Pt~~  104 (139)
                      +.+..+..++|+++|.++.+||.+|+.|.. .+  .++++.+. ++.-+.+|.++.+++...|        |..++|+.+
T Consensus        28 ea~~~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree~Pdid~~y~~~~~~~~~~gGwPl~v  107 (163)
T PF03190_consen   28 EALEKAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREERPDIDKIYMNAVQAMSGSGGWPLTV  107 (163)
T ss_dssp             HHHHHHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT-HHHHHHHHHHHHHHHS---SSEEE
T ss_pred             HHHHHHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEeccccCccHHHHHHHHHHHhcCCCCCCceE
Confidence            456666688999999999999999999874 33  33333332 3666778999999998887        788999988


Q ss_pred             EE-eCCeEEEEEeCCCh------HHHHHHHHHHhh
Q 032502          105 FL-KDGQQVDKLVGANK------PELQKKVAAAVD  132 (139)
Q Consensus       105 ~~-~~g~~~~~~~g~~~------~~l~~~i~~~~~  132 (139)
                      +. .+|+++........      ..|...|.++..
T Consensus       108 fltPdg~p~~~~tY~P~~~~~g~~~f~~~l~~i~~  142 (163)
T PF03190_consen  108 FLTPDGKPFFGGTYFPPEDRYGRPGFLQLLERIAE  142 (163)
T ss_dssp             EE-TTS-EEEEESS--SS-BTTB--HHHHHHHHHH
T ss_pred             EECCCCCeeeeeeecCCCCCCCCccHHHHHHHHHH
Confidence            88 99999887544322      356655555433

; PDB: 3IRA_A.

>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]

Probab=99.13  E-value=1.6e-10  Score=73.37  Aligned_cols=71  Identities=31%  Similarity=0.651  Sum_probs=56.7

Q ss_pred             hCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCC----CcEEEEEeCCcc-------------------------hhhhhh
Q 032502           44 KEGKIVIANFSATWCGPCRMIAPFFSELSEKYP----SLMFLLVDVDEL-------------------------VEFSTS   94 (139)
Q Consensus        44 ~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~----~v~~~~vd~~~~-------------------------~~~~~~   94 (139)
                      ..||.|.+||.+.||++|+.+.|.|.++++...    .+.++-|+.|.+                         .++.++
T Consensus        31 l~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~k  110 (157)
T KOG2501|consen   31 LQGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEK  110 (157)
T ss_pred             hCCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHh
Confidence            568999999999999999999999988887764    255555555431                         346778


Q ss_pred             CCCcceeEEEEE-eCCeEEEE
Q 032502           95 WDIKATPTFFFL-KDGQQVDK  114 (139)
Q Consensus        95 ~~v~~~Pt~~~~-~~g~~~~~  114 (139)
                      |.|.++|+++++ .+|..+..
T Consensus       111 y~v~~iP~l~i~~~dG~~v~~  131 (157)
T KOG2501|consen  111 YEVKGIPALVILKPDGTVVTE  131 (157)
T ss_pred             cccCcCceeEEecCCCCEehH
Confidence            999999999988 78877654

>PRK13703 conjugal pilus assembly protein TraF; Provisional

Probab=99.12  E-value=3.5e-09  Score=72.69  Aligned_cols=89  Identities=15%  Similarity=0.160  Sum_probs=70.7

Q ss_pred             CCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCc-----------chhhhhhCCCcceeEEEEE-eC-CeE
Q 032502           45 EGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDE-----------LVEFSTSWDIKATPTFFFL-KD-GQQ  111 (139)
Q Consensus        45 ~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~-----------~~~~~~~~~v~~~Pt~~~~-~~-g~~  111 (139)
                      .++..|++||...|++|+.+.|.+..++++| ++.++.|++|.           +...+.++||..+|+++++ .+ ++.
T Consensus       142 a~~~GL~fFy~s~Cp~C~~~aPil~~fa~~y-g~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv~~~t~~~  220 (248)
T PRK13703        142 AEHYGLMFFYRGQDPIDGQLAQVINDFRDTY-GLSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLVDPKSGSV  220 (248)
T ss_pred             HhcceEEEEECCCCchhHHHHHHHHHHHHHh-CCeEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEEECCCCcE
Confidence            4668899999999999999999999999999 56666666653           2345678999999998888 44 455


Q ss_pred             EEEEeCC-ChHHHHHHHHHHhhcc
Q 032502          112 VDKLVGA-NKPELQKKVAAAVDSV  134 (139)
Q Consensus       112 ~~~~~g~-~~~~l~~~i~~~~~~~  134 (139)
                      .-...|. +.++|.+.|..+...-
T Consensus       221 ~pv~~G~iS~deL~~Ri~~v~t~~  244 (248)
T PRK13703        221 RPLSYGFITQDDLAKRFLNVSTDF  244 (248)
T ss_pred             EEEeeccCCHHHHHHHHHHHHhcc
Confidence            5555688 9999999888776544

>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like

Probab=99.10  E-value=1.9e-09  Score=66.06  Aligned_cols=81  Identities=25%  Similarity=0.482  Sum_probs=55.5

Q ss_pred             eechhHHHHHHHHHhhCCCEEEEEEeCC-------CChhhhhhhHhHHHHHHhCC-CcEEEEEeCCcch-------hhhh
Q 032502           29 VTTKDIWDQKMSEASKEGKIVIANFSAT-------WCGPCRMIAPFFSELSEKYP-SLMFLLVDVDELV-------EFST   93 (139)
Q Consensus        29 i~~~~~~~~~~~~~~~~~k~vlv~f~~~-------~C~~C~~~~~~l~~~~~~~~-~v~~~~vd~~~~~-------~~~~   93 (139)
                      +..-+++.+.+.....++++++|+|+++       |||.|....|.+++.....+ +..++.+.+...+       .+..
T Consensus         2 v~gy~~~~~~~~~~~~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~   81 (119)
T PF06110_consen    2 VRGYDEFEKLVEEYENSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRT   81 (119)
T ss_dssp             EECHHHHHHHHHC--TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH
T ss_pred             ccCHHHHHHHHHHhhcCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceE
Confidence            3456777777776556778999999964       99999999999998877766 5888888775322       3333


Q ss_pred             --hCCCcceeEEEEEeCC
Q 032502           94 --SWDIKATPTFFFLKDG  109 (139)
Q Consensus        94 --~~~v~~~Pt~~~~~~g  109 (139)
                        ++++.++||++-+..+
T Consensus        82 ~p~~~l~~IPTLi~~~~~   99 (119)
T PF06110_consen   82 DPDLKLKGIPTLIRWETG   99 (119)
T ss_dssp             --CC---SSSEEEECTSS
T ss_pred             cceeeeeecceEEEECCC
Confidence              5999999999999766

; PDB: 1V9W_A 1WOU_A.

>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=99.08  E-value=6.6e-10  Score=71.03  Aligned_cols=110  Identities=18%  Similarity=0.160  Sum_probs=84.2

Q ss_pred             ccCCCceEEeechhHHHHHHHHHhhCCCEEEEEEe-CCCChhhhhhhHhHHHHHHhCC--CcEEEEEeCCc---------
Q 032502           20 EFAGGNVSLVTTKDIWDQKMSEASKEGKIVIANFS-ATWCGPCRMIAPFFSELSEKYP--SLMFLLVDVDE---------   87 (139)
Q Consensus        20 ~~~~~~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~-~~~C~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~---------   87 (139)
                      ...|..+|++...++....+.++...+++|||+|| ..+++.|....-.+++...++.  ++.++.|..|.         
T Consensus         4 l~~G~~aPdF~Lp~~~g~~v~Lsd~~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~Ds~~~~~~F~~   83 (157)
T COG1225           4 LKVGDKAPDFELPDQDGETVSLSDLRGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPDSPKSHKKFAE   83 (157)
T ss_pred             CCCCCcCCCeEeecCCCCEEehHHhcCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHH
Confidence            35677888888888777778888899999999999 8899999999999999888876  58888887753         


Q ss_pred             ------------chhhhhhCCCcc------------ee-EEEEEeCCeEEEEEeCC-C---hHHHHHHHHH
Q 032502           88 ------------LVEFSTSWDIKA------------TP-TFFFLKDGQQVDKLVGA-N---KPELQKKVAA  129 (139)
Q Consensus        88 ------------~~~~~~~~~v~~------------~P-t~~~~~~g~~~~~~~g~-~---~~~l~~~i~~  129 (139)
                                  +..+++.||+..            .+ ||++.++|++...+... .   .+++.+.|.+
T Consensus        84 k~~L~f~LLSD~~~~v~~~ygv~~~k~~~gk~~~~~~R~TfvId~dG~I~~~~~~v~~~~h~~~vl~~l~~  154 (157)
T COG1225          84 KHGLTFPLLSDEDGEVAEAYGVWGEKKMYGKEYMGIERSTFVIDPDGKIRYVWRKVKVKGHADEVLAALKK  154 (157)
T ss_pred             HhCCCceeeECCcHHHHHHhCcccccccCccccccccceEEEECCCCeEEEEecCCCCcccHHHHHHHHHH
Confidence                        455688888744            22 56666999999998655 3   3344444443

>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals

Probab=99.08  E-value=7.3e-09  Score=63.54  Aligned_cols=98  Identities=18%  Similarity=0.303  Sum_probs=77.0

Q ss_pred             HHHHHHHHHhhCCCEEEEEEeCC----CChhhhhhh--HhHHHHHHhCCCcEEEEEeCCcc--hhhhhhCCCcceeEEEE
Q 032502           34 IWDQKMSEASKEGKIVIANFSAT----WCGPCRMIA--PFFSELSEKYPSLMFLLVDVDEL--VEFSTSWDIKATPTFFF  105 (139)
Q Consensus        34 ~~~~~~~~~~~~~k~vlv~f~~~----~C~~C~~~~--~~l~~~~~~~~~v~~~~vd~~~~--~~~~~~~~v~~~Pt~~~  105 (139)
                      ++.+.+..+..+.|.++|+++++    ||.+|+...  |.+.+..+.  ++.++..|+...  ..++..+++.++|++.+
T Consensus         5 s~~eAl~~ak~e~K~llVylhs~~~~~~~~fc~~~l~~~~v~~~ln~--~fv~w~~dv~~~eg~~la~~l~~~~~P~~~~   82 (116)
T cd02991           5 TYSQALNDAKQELRFLLVYLHGDDHQDTDEFCRNTLCAPEVIEYINT--RMLFWACSVAKPEGYRVSQALRERTYPFLAM   82 (116)
T ss_pred             cHHHHHHHHHhhCCEEEEEEeCCCCccHHHHHHHHcCCHHHHHHHHc--CEEEEEEecCChHHHHHHHHhCCCCCCEEEE
Confidence            56777888888899999999999    889998753  555555543  577788888644  46788899999999888


Q ss_pred             E--eCC--eEEEEEeCC-ChHHHHHHHHHHhhc
Q 032502          106 L--KDG--QQVDKLVGA-NKPELQKKVAAAVDS  133 (139)
Q Consensus       106 ~--~~g--~~~~~~~g~-~~~~l~~~i~~~~~~  133 (139)
                      +  +++  .++.+..|. ++++|...|..++..
T Consensus        83 l~~~~~~~~vv~~i~G~~~~~~ll~~L~~~~~~  115 (116)
T cd02991          83 IMLKDNRMTIVGRLEGLIQPEDLINRLTFIMDA  115 (116)
T ss_pred             EEecCCceEEEEEEeCCCCHHHHHHHHHHHHhc
Confidence            8  233  468889999 999999999887653

ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.

>PRK13599 putative peroxiredoxin; Provisional

Probab=99.08  E-value=1e-09  Score=74.26  Aligned_cols=88  Identities=15%  Similarity=0.200  Sum_probs=66.1

Q ss_pred             hhCCCEE-EEEEeCCCChhhhhhhHhHHHHHHhCC--CcEEEEEeCCcc---------------------------hhhh
Q 032502           43 SKEGKIV-IANFSATWCGPCRMIAPFFSELSEKYP--SLMFLLVDVDEL---------------------------VEFS   92 (139)
Q Consensus        43 ~~~~k~v-lv~f~~~~C~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~~---------------------------~~~~   92 (139)
                      ...++++ |+.|++.||+.|....+.|.++++++.  ++.++.+.+|..                           ..++
T Consensus        25 ~~~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil~D~~~~va  104 (215)
T PRK13599         25 DYAGKWFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVIADDLGKVS  104 (215)
T ss_pred             HHCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEEECCCchHH
Confidence            3467765 578889999999999999999999984  688888888742                           2346


Q ss_pred             hhCCCc-------ceeEEEEE-eCCeEEEEEeC-----CChHHHHHHHHHH
Q 032502           93 TSWDIK-------ATPTFFFL-KDGQQVDKLVG-----ANKPELQKKVAAA  130 (139)
Q Consensus        93 ~~~~v~-------~~Pt~~~~-~~g~~~~~~~g-----~~~~~l~~~i~~~  130 (139)
                      +.||+.       .+|+++++ ++|+++..+..     .+.+++.+.|+.+
T Consensus       105 ~~yg~~~~~~~~~~~R~tfIID~dG~Ir~~~~~p~~~gr~~~eilr~l~~l  155 (215)
T PRK13599        105 NQLGMIHPGKGTNTVRAVFIVDDKGTIRLIMYYPQEVGRNVDEILRALKAL  155 (215)
T ss_pred             HHcCCCccCCCCceeeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHHHHh
Confidence            677763       57887777 79999887642     2567777777665

>PTZ00137 2-Cys peroxiredoxin; Provisional

Probab=99.05  E-value=3.2e-09  Score=73.54  Aligned_cols=114  Identities=16%  Similarity=0.079  Sum_probs=79.0

Q ss_pred             CcccCCCceEEeechh---HHHHHHHHHhh-CCCEEEEEEe-CCCChhhhhhhHhHHHHHHhCC--CcEEEEEeCCcc--
Q 032502           18 PVEFAGGNVSLVTTKD---IWDQKMSEASK-EGKIVIANFS-ATWCGPCRMIAPFFSELSEKYP--SLMFLLVDVDEL--   88 (139)
Q Consensus        18 ~~~~~~~~~~~i~~~~---~~~~~~~~~~~-~~k~vlv~f~-~~~C~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~~--   88 (139)
                      +....|..+|++...+   .-...+.+... .++++|++|| +.||+.|....+.|.++++++.  ++.++.|..|..  
T Consensus        66 ~~~~vGd~aPdF~l~~~~~g~~~~vsLsd~~kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds~~~  145 (261)
T PTZ00137         66 TSSLVGKLMPSFKGTALLNDDLVQFNSSDYFKDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDSPFS  145 (261)
T ss_pred             ccccCCCCCCCCEeecccCCCceEEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHH
Confidence            3345667777776332   11112344444 6778888888 8999999999999999999985  588888877641  


Q ss_pred             --------------------------hhhhhhCCCc-----ceeEEEEE-eCCeEEEEEeC-----CChHHHHHHHHHHh
Q 032502           89 --------------------------VEFSTSWDIK-----ATPTFFFL-KDGQQVDKLVG-----ANKPELQKKVAAAV  131 (139)
Q Consensus        89 --------------------------~~~~~~~~v~-----~~Pt~~~~-~~g~~~~~~~g-----~~~~~l~~~i~~~~  131 (139)
                                                ..+++.||+.     ..|+.+++ ++|+++..+..     .+.+++.+.|+.+.
T Consensus       146 h~aw~~~~~~~~g~~~l~fPlLsD~~~~iakayGv~~~~g~a~R~tFIID~dG~I~~~~~~~~~~gr~v~eiLr~l~alq  225 (261)
T PTZ00137        146 HKAWKELDVRQGGVSPLKFPLFSDISREVSKSFGLLRDEGFSHRASVLVDKAGVVKHVAVYDLGLGRSVDETLRLFDAVQ  225 (261)
T ss_pred             HHHHHhhhhhhccccCcceEEEEcCChHHHHHcCCCCcCCceecEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHhc
Confidence                                      2356778874     47877777 79999987632     26777777766553

>PRK13191 putative peroxiredoxin; Provisional

Probab=99.05  E-value=2e-09  Score=72.85  Aligned_cols=109  Identities=12%  Similarity=0.137  Sum_probs=72.7

Q ss_pred             CCCceEEeechhHHHHHHHHHhhCCCEEEE-EEeCCCChhhhhhhHhHHHHHHhCC--CcEEEEEeCCcc----------
Q 032502           22 AGGNVSLVTTKDIWDQKMSEASKEGKIVIA-NFSATWCGPCRMIAPFFSELSEKYP--SLMFLLVDVDEL----------   88 (139)
Q Consensus        22 ~~~~~~~i~~~~~~~~~~~~~~~~~k~vlv-~f~~~~C~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~~----------   88 (139)
                      .|..+|++...+...........++|+++| .|++.||+.|....+.|.+++.++.  ++.++.+++|..          
T Consensus         9 iG~~aPdF~l~~~~G~~~l~~~~~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds~~~h~aw~~~~   88 (215)
T PRK13191          9 IGEKFPEMEVITTHGKIKLPDDYKGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSNISHIEWVMWI   88 (215)
T ss_pred             CCCcCCCCEeecCCCCEEcHHHhCCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhH
Confidence            444555554333222222222246776665 7779999999999999999999984  688888888732          


Q ss_pred             -----------------hhhhhhCCCc-------ceeEEEEE-eCCeEEEEEeC-----CChHHHHHHHHHH
Q 032502           89 -----------------VEFSTSWDIK-------ATPTFFFL-KDGQQVDKLVG-----ANKPELQKKVAAA  130 (139)
Q Consensus        89 -----------------~~~~~~~~v~-------~~Pt~~~~-~~g~~~~~~~g-----~~~~~l~~~i~~~  130 (139)
                                       ..+++.||+.       ..|+.+++ .+|++.....+     .+.+++.+.|+.+
T Consensus        89 ~~~~~~~i~fPllsD~~~~ia~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~al  160 (215)
T PRK13191         89 EKNLKVEVPFPIIADPMGNVAKRLGMIHAESSTATVRAVFIVDDKGTVRLILYYPMEIGRNIDEILRAIRAL  160 (215)
T ss_pred             HHhcCCCCceEEEECCchHHHHHcCCcccccCCceeEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHh
Confidence                             2345667763       36766666 89999887543     2677777777665

>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine

Probab=99.05  E-value=1.9e-09  Score=72.44  Aligned_cols=91  Identities=16%  Similarity=0.157  Sum_probs=64.4

Q ss_pred             HHhhCC-CEE-EEEEeCCCChhhhhhhHhHHHHHHhCC--CcEEEEEeCCcc---------------------------h
Q 032502           41 EASKEG-KIV-IANFSATWCGPCRMIAPFFSELSEKYP--SLMFLLVDVDEL---------------------------V   89 (139)
Q Consensus        41 ~~~~~~-k~v-lv~f~~~~C~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~~---------------------------~   89 (139)
                      +....+ +++ |+.||+.||+.|....+.|.++++++.  ++.++.+..|..                           .
T Consensus        19 l~d~~g~k~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~~~~~~~~~~~i~~~~~~~~~fpil~D~~~   98 (203)
T cd03016          19 FHDYLGDSWGILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDSVESHIKWIEDIEEYTGVEIPFPIIADPDR   98 (203)
T ss_pred             HHHHcCCCEEEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceeEEECchH
Confidence            333445 554 557889999999999999999998885  588888887642                           2


Q ss_pred             hhhhhCCCc----cee----E-EEEEeCCeEEEEEeC-----CChHHHHHHHHHHh
Q 032502           90 EFSTSWDIK----ATP----T-FFFLKDGQQVDKLVG-----ANKPELQKKVAAAV  131 (139)
Q Consensus        90 ~~~~~~~v~----~~P----t-~~~~~~g~~~~~~~g-----~~~~~l~~~i~~~~  131 (139)
                      .+++.||+.    +.|    + +++.++|+++....+     .+.+++.+.|+++.
T Consensus        99 ~ia~~yg~~~~~~~~~~~~r~~fiID~~G~I~~~~~~~~~~gr~~~ell~~l~~lq  154 (203)
T cd03016          99 EVAKLLGMIDPDAGSTLTVRAVFIIDPDKKIRLILYYPATTGRNFDEILRVVDALQ  154 (203)
T ss_pred             HHHHHcCCccccCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHHh
Confidence            456678865    233    3 444489999887754     25677777776653

They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an

>PRK13189 peroxiredoxin; Provisional

Probab=99.04  E-value=2.3e-09  Score=72.94  Aligned_cols=110  Identities=15%  Similarity=0.201  Sum_probs=73.5

Q ss_pred             cCCCceEEeechhHHHHHHHHHh-hCCCEEE-EEEeCCCChhhhhhhHhHHHHHHhCC--CcEEEEEeCCcc--------
Q 032502           21 FAGGNVSLVTTKDIWDQKMSEAS-KEGKIVI-ANFSATWCGPCRMIAPFFSELSEKYP--SLMFLLVDVDEL--------   88 (139)
Q Consensus        21 ~~~~~~~~i~~~~~~~~~~~~~~-~~~k~vl-v~f~~~~C~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~~--------   88 (139)
                      ..|..+|++........ +.+.. ..+|.++ +.||+.||+.|....+.|.++++++.  ++.++.+.+|..        
T Consensus        10 ~vG~~aPdF~~~~~~g~-~~l~d~~~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~~~~h~aw~~   88 (222)
T PRK13189         10 LIGDKFPEFEVKTTHGP-IKLPDDYKGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQVFSHIKWVE   88 (222)
T ss_pred             cCCCcCCCcEeEcCCCC-EeeHHHhCCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHH
Confidence            34555666554332222 23322 3677555 56779999999999999999998885  688888877632        


Q ss_pred             -------------------hhhhhhCCCc-------ceeEEEEE-eCCeEEEEEeC-----CChHHHHHHHHHHh
Q 032502           89 -------------------VEFSTSWDIK-------ATPTFFFL-KDGQQVDKLVG-----ANKPELQKKVAAAV  131 (139)
Q Consensus        89 -------------------~~~~~~~~v~-------~~Pt~~~~-~~g~~~~~~~g-----~~~~~l~~~i~~~~  131 (139)
                                         ..+++.||+.       .+|+.+++ ++|++.....+     .+.+++.+.|+.+.
T Consensus        89 ~~~~~~g~~i~fPllsD~~~~ia~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~alq  163 (222)
T PRK13189         89 WIKEKLGVEIEFPIIADDRGEIAKKLGMISPGKGTNTVRAVFIIDPKGIIRAILYYPQEVGRNMDEILRLVKALQ  163 (222)
T ss_pred             hHHHhcCcCcceeEEEcCccHHHHHhCCCccccCCCceeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHhh
Confidence                               2346677764       46766666 89999877653     36777777777653

>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold

Probab=99.04  E-value=1.8e-09  Score=58.20  Aligned_cols=60  Identities=28%  Similarity=0.559  Sum_probs=51.1

Q ss_pred             EEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhhhh---hCCCcceeEEEEEeCC
Q 032502           50 IANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFST---SWDIKATPTFFFLKDG  109 (139)
Q Consensus        50 lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~---~~~v~~~Pt~~~~~~g  109 (139)
                      ++.||+.||++|..+.+.+.++....+++.+..++++.......   .+++..+|+++++..|
T Consensus         1 l~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~   63 (69)
T cd01659           1 LVLFYAPWCPFCQALRPVLAELALLNKGVKFEAVDVDEDPALEKELKRYGVGGVPTLVVFGPG   63 (69)
T ss_pred             CEEEECCCChhHHhhhhHHHHHHhhCCCcEEEEEEcCCChHHhhHHHhCCCccccEEEEEeCC
Confidence            47899999999999999999984445579999999998776554   7899999999999766

Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.

>PRK11200 grxA glutaredoxin 1; Provisional

Probab=99.01  E-value=5.6e-09  Score=60.60  Aligned_cols=75  Identities=16%  Similarity=0.330  Sum_probs=56.9

Q ss_pred             EEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcch----hhhhhCC--CcceeEEEEEeCCeEEEEEeCCChHHH
Q 032502           50 IANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELV----EFSTSWD--IKATPTFFFLKDGQQVDKLVGANKPEL  123 (139)
Q Consensus        50 lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~----~~~~~~~--v~~~Pt~~~~~~g~~~~~~~g~~~~~l  123 (139)
                      ++.|+.+||++|.++...|+++..++.++.+..+|++.+.    ++...++  +..+|++++  +|+.+.     ..++|
T Consensus         3 v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~ifi--~g~~ig-----g~~~~   75 (85)
T PRK11200          3 VVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEGISKADLEKTVGKPVETVPQIFV--DQKHIG-----GCTDF   75 (85)
T ss_pred             EEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEEE--CCEEEc-----CHHHH
Confidence            6779999999999999999999887778888899888642    4544444  589999876  776543     34667


Q ss_pred             HHHHHHHh
Q 032502          124 QKKVAAAV  131 (139)
Q Consensus       124 ~~~i~~~~  131 (139)
                      .+++.+.+
T Consensus        76 ~~~~~~~~   83 (85)
T PRK11200         76 EAYVKENL   83 (85)
T ss_pred             HHHHHHhc
Confidence            66666543

>PTZ00253 tryparedoxin peroxidase; Provisional

Probab=99.01  E-value=3e-09  Score=71.26  Aligned_cols=92  Identities=21%  Similarity=0.245  Sum_probs=67.0

Q ss_pred             HHHHhhCCCEEEEEEe-CCCChhhhhhhHhHHHHHHhCC--CcEEEEEeCCcc---------------------------
Q 032502           39 MSEASKEGKIVIANFS-ATWCGPCRMIAPFFSELSEKYP--SLMFLLVDVDEL---------------------------   88 (139)
Q Consensus        39 ~~~~~~~~k~vlv~f~-~~~C~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~~---------------------------   88 (139)
                      +.+....+|+++|+|| +.||+.|....+.|.++++++.  ++.++.|+.|..                           
T Consensus        29 v~l~d~~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~~~~~~~~~~~~~~~~~~~~~~fpll~D~  108 (199)
T PTZ00253         29 ISLSSYKGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDSEYAHLQWTLQERKKGGLGTMAIPMLADK  108 (199)
T ss_pred             EeHHHHCCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHhChHhhCCccccccceEECc
Confidence            4455567899999999 5889999999999999999986  688888887632                           


Q ss_pred             -hhhhhhCCCc------ceeEEEEE-eCCeEEEEEeCC-----ChHHHHHHHHHH
Q 032502           89 -VEFSTSWDIK------ATPTFFFL-KDGQQVDKLVGA-----NKPELQKKVAAA  130 (139)
Q Consensus        89 -~~~~~~~~v~------~~Pt~~~~-~~g~~~~~~~g~-----~~~~l~~~i~~~  130 (139)
                       .++++.||+.      .+|+.+++ ++|+++....+.     +.+++.+.|..+
T Consensus       109 ~~~ia~~ygv~~~~~g~~~r~~fiID~~G~i~~~~~~~~~~~r~~~e~l~~l~a~  163 (199)
T PTZ00253        109 TKSIARSYGVLEEEQGVAYRGLFIIDPKGMLRQITVNDMPVGRNVEEVLRLLEAF  163 (199)
T ss_pred             HhHHHHHcCCcccCCCceEEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHhh
Confidence             2356678875      35766656 899998877653     445555555444

>PRK10877 protein disulfide isomerase II DsbC; Provisional

Probab=98.99  E-value=5.8e-09  Score=71.42  Aligned_cols=80  Identities=18%  Similarity=0.357  Sum_probs=61.0

Q ss_pred             CCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCC--------------------------------------
Q 032502           45 EGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVD--------------------------------------   86 (139)
Q Consensus        45 ~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~--------------------------------------   86 (139)
                      .++.+++.|.-+.||+|+++++.+.++.+.  ++.+..+...                                      
T Consensus       106 ~~k~~I~vFtDp~CpyCkkl~~~l~~~~~~--~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~~~~  183 (232)
T PRK10877        106 QEKHVITVFTDITCGYCHKLHEQMKDYNAL--GITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVSPAS  183 (232)
T ss_pred             CCCEEEEEEECCCChHHHHHHHHHHHHhcC--CeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCCccc
Confidence            467889999999999999999999888653  4444333221                                      


Q ss_pred             ------cchhhhhhCCCcceeEEEEEeCCeEEEEEeCC-ChHHHHHHHHHH
Q 032502           87 ------ELVEFSTSWDIKATPTFFFLKDGQQVDKLVGA-NKPELQKKVAAA  130 (139)
Q Consensus        87 ------~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~i~~~  130 (139)
                            ++..+++++||.++|+++ +.||+.+   .|. +.++|.++|++.
T Consensus       184 c~~~v~~~~~la~~lgi~gTPtiv-~~~G~~~---~G~~~~~~L~~~l~~~  230 (232)
T PRK10877        184 CDVDIADHYALGVQFGVQGTPAIV-LSNGTLV---PGYQGPKEMKAFLDEH  230 (232)
T ss_pred             ccchHHHhHHHHHHcCCccccEEE-EcCCeEe---eCCCCHHHHHHHHHHc
Confidence                  134467789999999999 6788754   687 889999988764

>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol

Probab=98.95  E-value=3.3e-08  Score=59.08  Aligned_cols=94  Identities=21%  Similarity=0.294  Sum_probs=69.0

Q ss_pred             EeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCC-cEEEEEeCCcchh----hhhhCCCc-cee
Q 032502           28 LVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVDELVE----FSTSWDIK-ATP  101 (139)
Q Consensus        28 ~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~-v~~~~vd~~~~~~----~~~~~~v~-~~P  101 (139)
                      .+.+.+++++.+..+  .+++++++=.++.|+-+......+++.....++ +.++.+|+-++++    ++++|||. .-|
T Consensus         3 ~L~t~eql~~i~~~S--~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~HeSP   80 (105)
T PF11009_consen    3 PLTTEEQLEEILEES--KEKPVLIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVKHESP   80 (105)
T ss_dssp             E--SHHHHHHHHHH-----SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT----SS
T ss_pred             ccCCHHHHHHHHHhc--ccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCCcCCC
Confidence            567788888877543  478999999999999999999999999998886 9999999988765    57889985 789


Q ss_pred             EEEEEeCCeEEEEEeCC--ChHHH
Q 032502          102 TFFFLKDGQQVDKLVGA--NKPEL  123 (139)
Q Consensus       102 t~~~~~~g~~~~~~~g~--~~~~l  123 (139)
                      .+++++||+.+......  +.+.|
T Consensus        81 Q~ili~~g~~v~~aSH~~It~~~l  104 (105)
T PF11009_consen   81 QVILIKNGKVVWHASHWDITAEAL  104 (105)
T ss_dssp             EEEEEETTEEEEEEEGGG-SHHHH
T ss_pred             cEEEEECCEEEEECccccCCHHhc
Confidence            99999999999876544  55554

The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.

>TIGR02180 GRX_euk Glutaredoxin

Probab=98.94  E-value=7.6e-09  Score=59.61  Aligned_cols=60  Identities=18%  Similarity=0.385  Sum_probs=45.5

Q ss_pred             EEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcch-----hhhhhCCCcceeEEEEEeCCeEE
Q 032502           50 IANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELV-----EFSTSWDIKATPTFFFLKDGQQV  112 (139)
Q Consensus        50 lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~-----~~~~~~~v~~~Pt~~~~~~g~~~  112 (139)
                      |+.|+++||++|+.+.+.|.++.-. +.+.++.++.+.+.     .+.+.+++.++|++++  +|+.+
T Consensus         1 V~~f~~~~Cp~C~~~~~~L~~~~i~-~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~i--~g~~i   65 (84)
T TIGR02180         1 VVVFSKSYCPYCKKAKEILAKLNVK-PAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIFI--NGKFI   65 (84)
T ss_pred             CEEEECCCChhHHHHHHHHHHcCCC-CCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEEE--CCEEE
Confidence            4679999999999999999988621 13777888776543     2566789999999865  77654

This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.

>KOG3425 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.92  E-value=2.1e-08  Score=60.52  Aligned_cols=78  Identities=23%  Similarity=0.462  Sum_probs=60.9

Q ss_pred             echhHHHHHHHHHhhCCCEEEEEEeC--------CCChhhhhhhHhHHHHHHhCC-CcEEEEEeCCcc-------hhhhh
Q 032502           30 TTKDIWDQKMSEASKEGKIVIANFSA--------TWCGPCRMIAPFFSELSEKYP-SLMFLLVDVDEL-------VEFST   93 (139)
Q Consensus        30 ~~~~~~~~~~~~~~~~~k~vlv~f~~--------~~C~~C~~~~~~l~~~~~~~~-~v~~~~vd~~~~-------~~~~~   93 (139)
                      ...++|++.+... .+++.++++|++        +|||.|....|.+.+..+..+ ++.|+.++..+.       ..+..
T Consensus        10 ~g~e~~~~~~~~~-~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~FR~   88 (128)
T KOG3425|consen   10 PGYESFEETLKNV-ENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANPFRK   88 (128)
T ss_pred             chHHHHHHHHHHH-hCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCcccc
Confidence            3466777777655 456679999986        499999999999999888776 599999998643       34556


Q ss_pred             hCCC-cceeEEEEEeC
Q 032502           94 SWDI-KATPTFFFLKD  108 (139)
Q Consensus        94 ~~~v-~~~Pt~~~~~~  108 (139)
                      ..++ .++||++-+++
T Consensus        89 d~~~lt~vPTLlrw~~  104 (128)
T KOG3425|consen   89 DPGILTAVPTLLRWKR  104 (128)
T ss_pred             CCCceeecceeeEEcC
Confidence            6666 99999999875

>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.92  E-value=3.4e-09  Score=70.40  Aligned_cols=91  Identities=24%  Similarity=0.503  Sum_probs=75.0

Q ss_pred             CceEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCC--CcEEEEEeCCcchhhhhhCCC----
Q 032502           24 GNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP--SLMFLLVDVDELVEFSTSWDI----   97 (139)
Q Consensus        24 ~~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~~~~~~~~~~v----   97 (139)
                      +.+..+...+.++..+.  ..+...-+|.|++.|.+.|..+.|.+.++..+|.  +++|-.+|+...++.+.+|+|    
T Consensus       124 e~ikyf~~~q~~deel~--rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGrfpd~a~kfris~s~  201 (265)
T KOG0914|consen  124 ETIKYFTNMQLEDEELD--RNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGRFPDVAAKFRISLSP  201 (265)
T ss_pred             hheeeecchhhHHHHhc--cCCceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeeccCcChHHheeeccCc
Confidence            34566656665555553  2345688999999999999999999999999996  499999999999999999987    


Q ss_pred             --cceeEEEEEeCCeEEEEEe
Q 032502           98 --KATPTFFFLKDGQQVDKLV  116 (139)
Q Consensus        98 --~~~Pt~~~~~~g~~~~~~~  116 (139)
                        ++.||+++|++|+.+.+..
T Consensus       202 ~srQLPT~ilFq~gkE~~RrP  222 (265)
T KOG0914|consen  202 GSRQLPTYILFQKGKEVSRRP  222 (265)
T ss_pred             ccccCCeEEEEccchhhhcCc
Confidence              4789999999999887654

>TIGR02183 GRXA Glutaredoxin, GrxA family

Probab=98.85  E-value=3.1e-08  Score=57.61  Aligned_cols=73  Identities=15%  Similarity=0.319  Sum_probs=54.1

Q ss_pred             EEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcc----hhhhhhCCC--cceeEEEEEeCCeEEEEEeCCChHHH
Q 032502           50 IANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDEL----VEFSTSWDI--KATPTFFFLKDGQQVDKLVGANKPEL  123 (139)
Q Consensus        50 lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~----~~~~~~~~v--~~~Pt~~~~~~g~~~~~~~g~~~~~l  123 (139)
                      |+.|..+||++|..+...|.++...++++.+..+|.+.+    .++.+.++-  ..+|++++  +|+.+.     ..++|
T Consensus         2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~ifi--~g~~ig-----G~~dl   74 (86)
T TIGR02183         2 VVIFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAEGISKADLEKTVGKPVETVPQIFV--DEKHVG-----GCTDF   74 (86)
T ss_pred             EEEEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEEE--CCEEec-----CHHHH
Confidence            577899999999999999999877766778888888743    345566663  79999976  665432     34666


Q ss_pred             HHHHHH
Q 032502          124 QKKVAA  129 (139)
Q Consensus       124 ~~~i~~  129 (139)
                      .+++.+
T Consensus        75 ~~~~~~   80 (86)
T TIGR02183        75 EQLVKE   80 (86)
T ss_pred             HHHHHh
Confidence            666554

This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.

>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms

Probab=98.85  E-value=2.3e-07  Score=57.20  Aligned_cols=106  Identities=21%  Similarity=0.400  Sum_probs=81.5

Q ss_pred             eEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCC-cEEEEEeCCcchhhhhhCCCccee-EE
Q 032502           26 VSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVDELVEFSTSWDIKATP-TF  103 (139)
Q Consensus        26 ~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~-v~~~~vd~~~~~~~~~~~~v~~~P-t~  103 (139)
                      ++.+.+.-..++.+..  ..+|.+++.|...|-+.|..+...|.+.+++..+ ..++.+|.++-+++.+.|.+. .| |+
T Consensus         2 L~~L~s~~~VDqAI~~--e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~a~IY~vDi~~Vpdfn~~yel~-dP~tv   78 (133)
T PF02966_consen    2 LPHLHSGWHVDQAILS--EEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNFAVIYLVDIDEVPDFNQMYELY-DPCTV   78 (133)
T ss_dssp             SEEE-SHHHHHHHHHH---SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTTHCCHHHTTS--SSEEE
T ss_pred             CcccCccchHHHHHhc--cCceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcceEEEEEEcccchhhhcccccC-CCeEE
Confidence            4667788888888764  3689999999999999999999999999999887 778899999999999999999 67 46


Q ss_pred             EEEeCCeEEEEEeC---------C--ChHHHHHHHHHHhhcc
Q 032502          104 FFLKDGQQVDKLVG---------A--NKPELQKKVAAAVDSV  134 (139)
Q Consensus       104 ~~~~~g~~~~~~~g---------~--~~~~l~~~i~~~~~~~  134 (139)
                      ++|-+++.+....|         .  +.+++.+.++.+-..+
T Consensus        79 mFF~rnkhm~vD~GtgnnnKin~~~~~kqe~iDiie~iyrga  120 (133)
T PF02966_consen   79 MFFFRNKHMMVDFGTGNNNKINWAFEDKQEFIDIIETIYRGA  120 (133)
T ss_dssp             EEEETTEEEEEESSSSSSSSBCS--SCHHHHHHHHHHHHHHH
T ss_pred             EEEecCeEEEEEecCCCccEEEEEcCcHHHHHHHHHHHHHHh
Confidence            66667776654433         2  5788888877665443

Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=98.84  E-value=3.9e-08  Score=75.21  Aligned_cols=77  Identities=21%  Similarity=0.294  Sum_probs=66.9

Q ss_pred             CEE-EEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhhhhhCCCcceeEEEEEeCCeEEEEEeCC-ChHHHH
Q 032502           47 KIV-IANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGA-NKPELQ  124 (139)
Q Consensus        47 k~v-lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~l~  124 (139)
                      +++ +-.|.+++|++|......+++++...+++..-.+|....++++++|+|.++|++++  ||+.+..  |. +.+++.
T Consensus       476 ~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~v~~vP~~~i--~~~~~~~--G~~~~~~~~  551 (555)
T TIGR03143       476 KPVNIKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDVSHFPDLKDEYGIMSVPAIVV--DDQQVYF--GKKTIEEML  551 (555)
T ss_pred             CCeEEEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEECcccHHHHHhCCceecCEEEE--CCEEEEe--eCCCHHHHH
Confidence            454 55567999999999999999999999999999999999999999999999999999  7776543  76 888887


Q ss_pred             HHH
Q 032502          125 KKV  127 (139)
Q Consensus       125 ~~i  127 (139)
                      ++|
T Consensus       552 ~~~  554 (555)
T TIGR03143       552 ELI  554 (555)
T ss_pred             Hhh
Confidence            765

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti

Probab=98.83  E-value=5.2e-08  Score=62.11  Aligned_cols=41  Identities=24%  Similarity=0.564  Sum_probs=33.8

Q ss_pred             CCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeC
Q 032502           45 EGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDV   85 (139)
Q Consensus        45 ~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~   85 (139)
                      ..+++|+.|+.++||+|+.+.+.+.++...++++.++..+.
T Consensus         4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~   44 (154)
T cd03023           4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKEDPDVRVVFKEF   44 (154)
T ss_pred             CCCEEEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEeC
Confidence            46789999999999999999999999888887765554433

It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.

>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile

Probab=98.83  E-value=3.6e-08  Score=54.98  Aligned_cols=67  Identities=22%  Similarity=0.344  Sum_probs=48.6

Q ss_pred             EEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhhhhh----CCCcceeEEEEEeCCeEEEEEeCCChHHHHH
Q 032502           50 IANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTS----WDIKATPTFFFLKDGQQVDKLVGANKPELQK  125 (139)
Q Consensus        50 lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~----~~v~~~Pt~~~~~~g~~~~~~~g~~~~~l~~  125 (139)
                      ++.|+++||++|..+...|.+.     ++.+..++++.+....+.    .++..+|++++  +|+   .+.|.+.++|.+
T Consensus         2 v~l~~~~~c~~c~~~~~~l~~~-----~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~--~~~---~i~g~~~~~l~~   71 (73)
T cd02976           2 VTVYTKPDCPYCKATKRFLDER-----GIPFEEVDVDEDPEALEELKKLNGYRSVPVVVI--GDE---HLSGFRPDKLRA   71 (73)
T ss_pred             EEEEeCCCChhHHHHHHHHHHC-----CCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEE--CCE---EEecCCHHHHHh
Confidence            5678999999999998888663     567777888766544333    37889999976  453   455777777765


Q ss_pred             H
Q 032502          126 K  126 (139)
Q Consensus       126 ~  126 (139)
                      +
T Consensus        72 ~   72 (73)
T cd02976          72 L   72 (73)
T ss_pred             h
Confidence            4

In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou

>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.81  E-value=4.3e-09  Score=70.18  Aligned_cols=101  Identities=28%  Similarity=0.538  Sum_probs=83.9

Q ss_pred             eEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhhhhhCCCcceeEEEE
Q 032502           26 VSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFF  105 (139)
Q Consensus        26 ~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~  105 (139)
                      +..+.....|   +.   .+++.++++||++||..|..+...+..+++..+++.|+.++.++.++++..+.+..+|.+++
T Consensus         3 v~~i~~~~~f---~~---~~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~~~~~~~k~~a~~~~eis~~~~v~~vp~~~~   76 (227)
T KOG0911|consen    3 VQFIVFQEQF---LD---QKGKLLVLHFWAIWAVVQKQMDQVFDHLAEYFKNAQFLKLEAEEFPEISNLIAVEAVPYFVF   76 (227)
T ss_pred             ceeehhHHHH---HH---hccchhhhhhhhhhhhhhhhHHHHHHHHHHhhhhheeeeehhhhhhHHHHHHHHhcCceeee
Confidence            3444455555   22   26889999999999999999999999999999889999999999999999999999999999


Q ss_pred             EeCCeEEEEEeCCChHHHHHHHHHHhh
Q 032502          106 LKDGQQVDKLVGANKPELQKKVAAAVD  132 (139)
Q Consensus       106 ~~~g~~~~~~~g~~~~~l~~~i~~~~~  132 (139)
                      +..|+.+.+..+.....+...+..+..
T Consensus        77 ~~~~~~v~~l~~~~~~~~~~~~~~~~~  103 (227)
T KOG0911|consen   77 FFLGEKVDRLSGADPPFLVSKVEKLAE  103 (227)
T ss_pred             eecchhhhhhhccCcHHHHHHHHHhhh
Confidence            999999999888865555555554433

>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors

Probab=98.77  E-value=6.1e-08  Score=52.45  Aligned_cols=56  Identities=25%  Similarity=0.464  Sum_probs=44.2

Q ss_pred             EEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhh----hhhCCCcceeEEEEEeCCeEE
Q 032502           50 IANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEF----STSWDIKATPTFFFLKDGQQV  112 (139)
Q Consensus        50 lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~----~~~~~v~~~Pt~~~~~~g~~~  112 (139)
                      ++.|+.+||++|......|++.     ++.+..+|++.+++.    .+..|..++|++++  +|+.+
T Consensus         1 V~vy~~~~C~~C~~~~~~L~~~-----~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i--~g~~I   60 (60)
T PF00462_consen    1 VVVYTKPGCPYCKKAKEFLDEK-----GIPYEEVDVDEDEEAREELKELSGVRTVPQVFI--DGKFI   60 (60)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHT-----TBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEE--TTEEE
T ss_pred             cEEEEcCCCcCHHHHHHHHHHc-----CCeeeEcccccchhHHHHHHHHcCCCccCEEEE--CCEEC
Confidence            4679999999999999988544     688888999877543    33349999999998  77653

Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....

>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional

Probab=98.76  E-value=1.2e-07  Score=65.67  Aligned_cols=82  Identities=15%  Similarity=0.331  Sum_probs=58.9

Q ss_pred             CCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCC--------------------------------------
Q 032502           45 EGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVD--------------------------------------   86 (139)
Q Consensus        45 ~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~--------------------------------------   86 (139)
                      ..+.+|+.|.-+.||+|+++.+.+.++.+. +++.+..+...                                      
T Consensus       116 ~ak~~I~vFtDp~CpyC~kl~~~l~~~~~~-g~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~~~~~~~~  194 (251)
T PRK11657        116 DAPRIVYVFADPNCPYCKQFWQQARPWVDS-GKVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGGKLGLKPP  194 (251)
T ss_pred             CCCeEEEEEECCCChhHHHHHHHHHHHhhc-CceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhhccCCCcc
Confidence            457889999999999999999999887665 34555444320                                      


Q ss_pred             ------------cchhhhhhCCCcceeEEEEEe-CCeEEEEEeCC-ChHHHHHHHH
Q 032502           87 ------------ELVEFSTSWDIKATPTFFFLK-DGQQVDKLVGA-NKPELQKKVA  128 (139)
Q Consensus        87 ------------~~~~~~~~~~v~~~Pt~~~~~-~g~~~~~~~g~-~~~~l~~~i~  128 (139)
                                  ++..+..++|+.++|++++-. +| .+....|. +.++|.+.|.
T Consensus       195 ~~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~~G-~~~~v~G~~~~~~L~~~l~  249 (251)
T PRK11657        195 ASIPAAVRKQLADNQKLMDDLGANATPAIYYMDKDG-TLQQVVGLPDPAQLAEIMG  249 (251)
T ss_pred             ccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCC-CEEEecCCCCHHHHHHHhC
Confidence                        012356679999999999974 45 33455688 7888887664

>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold

Probab=98.75  E-value=7.2e-08  Score=64.47  Aligned_cols=76  Identities=22%  Similarity=0.362  Sum_probs=54.1

Q ss_pred             CCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeC--C------------------------------------
Q 032502           45 EGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDV--D------------------------------------   86 (139)
Q Consensus        45 ~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~--~------------------------------------   86 (139)
                      .+++.++.|+.+.|++|+++.+.+.+   ...++.+..+..  .                                    
T Consensus        76 ~~~~~i~~f~D~~Cp~C~~~~~~l~~---~~~~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~~~~  152 (197)
T cd03020          76 NGKRVVYVFTDPDCPYCRKLEKELKP---NADGVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPPPAA  152 (197)
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHhh---ccCceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCCCcc
Confidence            35799999999999999999999877   223444433322  1                                    


Q ss_pred             -------cchhhhhhCCCcceeEEEEEeCCeEEEEEeCC-ChHHHHHHH
Q 032502           87 -------ELVEFSTSWDIKATPTFFFLKDGQQVDKLVGA-NKPELQKKV  127 (139)
Q Consensus        87 -------~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~i  127 (139)
                             ++..+++.+||.++|+++ +.+|+.   ..|. +.++|.++|
T Consensus       153 ~~~~~i~~~~~l~~~~gi~gtPtii-~~~G~~---~~G~~~~~~l~~~L  197 (197)
T cd03020         153 SCDNPVAANLALGRQLGVNGTPTIV-LADGRV---VPGAPPAAQLEALL  197 (197)
T ss_pred             ccCchHHHHHHHHHHcCCCcccEEE-ECCCeE---ecCCCCHHHHHhhC
Confidence                   123467789999999998 777875   4577 777776653

They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.

>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH

Probab=98.71  E-value=1.1e-07  Score=53.34  Aligned_cols=66  Identities=21%  Similarity=0.340  Sum_probs=50.2

Q ss_pred             EEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhhhhhC---CCcceeEEEEEeCCeEEEEEeCCChHHHHH
Q 032502           51 ANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSW---DIKATPTFFFLKDGQQVDKLVGANKPELQK  125 (139)
Q Consensus        51 v~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~---~v~~~Pt~~~~~~g~~~~~~~g~~~~~l~~  125 (139)
                      ..|..++|++|+.....|.+.     ++.|-.+|+++++.....+   |...+|++++  +|.  ..+.|++++.|.+
T Consensus         2 ~ly~~~~Cp~C~~ak~~L~~~-----~i~~~~~di~~~~~~~~~~~~~g~~~vP~v~~--~g~--~~~~G~~~~~~~~   70 (72)
T TIGR02194         2 TVYSKNNCVQCKMTKKALEEH-----GIAFEEINIDEQPEAIDYVKAQGFRQVPVIVA--DGD--LSWSGFRPDKLKA   70 (72)
T ss_pred             EEEeCCCCHHHHHHHHHHHHC-----CCceEEEECCCCHHHHHHHHHcCCcccCEEEE--CCC--cEEeccCHHHHHh
Confidence            467899999999999999753     7888888988777554444   8889999876  443  2455778887765

NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.

>TIGR02190 GlrX-dom Glutaredoxin-family domain

Probab=98.71  E-value=1.8e-07  Score=53.46  Aligned_cols=59  Identities=14%  Similarity=0.219  Sum_probs=44.7

Q ss_pred             CEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcc---hhhhhhCCCcceeEEEEEeCCeEE
Q 032502           47 KIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDEL---VEFSTSWDIKATPTFFFLKDGQQV  112 (139)
Q Consensus        47 k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~---~~~~~~~~v~~~Pt~~~~~~g~~~  112 (139)
                      +.-|+.|+.+||++|++....|.+.     ++.|..+|++++   ..+.+..|...+|.+++  +|+.+
T Consensus         7 ~~~V~ly~~~~Cp~C~~ak~~L~~~-----gi~y~~idi~~~~~~~~~~~~~g~~~vP~i~i--~g~~i   68 (79)
T TIGR02190         7 PESVVVFTKPGCPFCAKAKATLKEK-----GYDFEEIPLGNDARGRSLRAVTGATTVPQVFI--GGKLI   68 (79)
T ss_pred             CCCEEEEECCCCHhHHHHHHHHHHc-----CCCcEEEECCCChHHHHHHHHHCCCCcCeEEE--CCEEE
Confidence            3346779999999999999999754     677777888765   34555578899999976  77653

This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.

>PRK10329 glutaredoxin-like protein; Provisional

Probab=98.67  E-value=6.6e-07  Score=51.43  Aligned_cols=73  Identities=14%  Similarity=0.224  Sum_probs=55.9

Q ss_pred             EEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhhh---hhCCCcceeEEEEEeCCeEEEEEeCCChHHHHHH
Q 032502           50 IANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFS---TSWDIKATPTFFFLKDGQQVDKLVGANKPELQKK  126 (139)
Q Consensus        50 lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~---~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~l~~~  126 (139)
                      +..|..+||++|..++..|.+.     ++.|-.+|++++++..   ...|...+|++++  ++.   .+.|+..++|.++
T Consensus         3 v~lYt~~~Cp~C~~ak~~L~~~-----gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~i--~~~---~~~Gf~~~~l~~~   72 (81)
T PRK10329          3 ITIYTRNDCVQCHATKRAMESR-----GFDFEMINVDRVPEAAETLRAQGFRQLPVVIA--GDL---SWSGFRPDMINRL   72 (81)
T ss_pred             EEEEeCCCCHhHHHHHHHHHHC-----CCceEEEECCCCHHHHHHHHHcCCCCcCEEEE--CCE---EEecCCHHHHHHH
Confidence            5678899999999999988553     7888899998776532   3357789999976  443   4558899999988


Q ss_pred             HHHHhh
Q 032502          127 VAAAVD  132 (139)
Q Consensus       127 i~~~~~  132 (139)
                      +.....
T Consensus        73 ~~~~~~   78 (81)
T PRK10329         73 HPAPHA   78 (81)
T ss_pred             HHhhhh
Confidence            876543

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=98.66  E-value=2.9e-07  Score=69.91  Aligned_cols=80  Identities=18%  Similarity=0.343  Sum_probs=68.0

Q ss_pred             CCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhhhhhCCCcceeEEEEEeCCeEEEEEeCC-ChHHHH
Q 032502           46 GKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGA-NKPELQ  124 (139)
Q Consensus        46 ~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~l~  124 (139)
                      ++.-+..|.+++|++|..+...+++++...+++.+-.+|....++++++|++.++|++++  ||+..  +.|. +.++|.
T Consensus       116 ~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~i~~~~id~~~~~~~~~~~~v~~VP~~~i--~~~~~--~~g~~~~~~~~  191 (517)
T PRK15317        116 GDFHFETYVSLSCHNCPDVVQALNLMAVLNPNITHTMIDGALFQDEVEARNIMAVPTVFL--NGEEF--GQGRMTLEEIL  191 (517)
T ss_pred             CCeEEEEEEcCCCCCcHHHHHHHHHHHHhCCCceEEEEEchhCHhHHHhcCCcccCEEEE--CCcEE--EecCCCHHHHH
Confidence            445588899999999999999999999999999999999999999999999999999987  66543  4466 777777


Q ss_pred             HHHHH
Q 032502          125 KKVAA  129 (139)
Q Consensus       125 ~~i~~  129 (139)
                      +.+.+
T Consensus       192 ~~~~~  196 (517)
T PRK15317        192 AKLDT  196 (517)
T ss_pred             HHHhc
Confidence            76654

>PHA03050 glutaredoxin; Provisional

Probab=98.60  E-value=3.2e-07  Score=55.57  Aligned_cols=60  Identities=22%  Similarity=0.323  Sum_probs=42.4

Q ss_pred             EEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCc---c----hhhhhhCCCcceeEEEEEeCCeEEE
Q 032502           50 IANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDE---L----VEFSTSWDIKATPTFFFLKDGQQVD  113 (139)
Q Consensus        50 lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~---~----~~~~~~~~v~~~Pt~~~~~~g~~~~  113 (139)
                      |+.|..+|||+|.+....|.+..-..+.+.  .+|+++   .    .++.+..|...+|++++  +|+.+.
T Consensus        15 V~vys~~~CPyC~~ak~~L~~~~i~~~~~~--~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI--~g~~iG   81 (108)
T PHA03050         15 VTIFVKFTCPFCRNALDILNKFSFKRGAYE--IVDIKEFKPENELRDYFEQITGGRTVPRIFF--GKTSIG   81 (108)
T ss_pred             EEEEECCCChHHHHHHHHHHHcCCCcCCcE--EEECCCCCCCHHHHHHHHHHcCCCCcCEEEE--CCEEEe
Confidence            567999999999999999988744333344  445543   2    34555668889999977  776543

>PRK10954 periplasmic protein disulfide isomerase I; Provisional

Probab=98.59  E-value=4.9e-07  Score=60.94  Aligned_cols=39  Identities=15%  Similarity=0.406  Sum_probs=31.4

Q ss_pred             CCEEEEEEeCCCChhhhhhhHhH---HHHHHhCC-CcEEEEEe
Q 032502           46 GKIVIANFSATWCGPCRMIAPFF---SELSEKYP-SLMFLLVD   84 (139)
Q Consensus        46 ~k~vlv~f~~~~C~~C~~~~~~l---~~~~~~~~-~v~~~~vd   84 (139)
                      +++.|+.|+...||+|..+.+.+   +.+.+.++ ++.++.+.
T Consensus        37 ~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~~v~~~~~~   79 (207)
T PRK10954         37 GEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPEGTKMTKYH   79 (207)
T ss_pred             CCCeEEEEeCCCCccHHHhcccccchHHHHHhCCCCCeEEEec
Confidence            56779999999999999999876   78888887 45655443

>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold

Probab=98.58  E-value=5.7e-07  Score=58.83  Aligned_cols=37  Identities=24%  Similarity=0.462  Sum_probs=31.6

Q ss_pred             CCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCC-cEEE
Q 032502           45 EGKIVIANFSATWCGPCRMIAPFFSELSEKYPS-LMFL   81 (139)
Q Consensus        45 ~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~-v~~~   81 (139)
                      .+++.|+.|+...||+|+.+.+.+..+.+++++ +.|.
T Consensus        14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~v~~~   51 (178)
T cd03019          14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPKDVKFE   51 (178)
T ss_pred             CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCCCceEE
Confidence            468899999999999999999999999888863 4443

It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.

>TIGR02189 GlrX-like_plant Glutaredoxin-like family

Probab=98.58  E-value=1.3e-07  Score=56.37  Aligned_cols=57  Identities=21%  Similarity=0.339  Sum_probs=40.2

Q ss_pred             EEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchh-------hhhhCCCcceeEEEEEeCCeEEE
Q 032502           50 IANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVE-------FSTSWDIKATPTFFFLKDGQQVD  113 (139)
Q Consensus        50 lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~-------~~~~~~v~~~Pt~~~~~~g~~~~  113 (139)
                      ++.|..+|||+|.++...|.+.     ++.+..+|++.++.       +.+..|...+|.+++  +|+.+.
T Consensus        10 Vvvysk~~Cp~C~~ak~~L~~~-----~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vfi--~g~~iG   73 (99)
T TIGR02189        10 VVIFSRSSCCMCHVVKRLLLTL-----GVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVFV--GGKLVG   73 (99)
T ss_pred             EEEEECCCCHHHHHHHHHHHHc-----CCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEEE--CCEEEc
Confidence            5569999999999999988765     45555666665432       333446789999865  775443

This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.

>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=98.56  E-value=7.7e-07  Score=50.95  Aligned_cols=58  Identities=19%  Similarity=0.359  Sum_probs=43.1

Q ss_pred             EEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcch-----hhhhhCCCcceeEEEEEeCCeEE
Q 032502           50 IANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELV-----EFSTSWDIKATPTFFFLKDGQQV  112 (139)
Q Consensus        50 lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~-----~~~~~~~v~~~Pt~~~~~~g~~~  112 (139)
                      ++.|+++|||+|..+...|.++..   .+.++.++.+.+.     .+.+.+|..++|++++  +|+.+
T Consensus         2 v~~y~~~~Cp~C~~~~~~l~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v~~--~g~~i   64 (82)
T cd03419           2 VVVFSKSYCPYCKRAKSLLKELGV---KPAVVELDQHEDGSEIQDYLQELTGQRTVPNVFI--GGKFI   64 (82)
T ss_pred             EEEEEcCCCHHHHHHHHHHHHcCC---CcEEEEEeCCCChHHHHHHHHHHhCCCCCCeEEE--CCEEE
Confidence            467899999999999999988744   3566677766542     3455678899999754  67653

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes

>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria

Probab=98.55  E-value=1.3e-06  Score=48.94  Aligned_cols=66  Identities=15%  Similarity=0.316  Sum_probs=46.8

Q ss_pred             EEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchh---hhhhCCCcceeEEEEEeCCeEEEEEeCCChHHHHHH
Q 032502           50 IANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVE---FSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKK  126 (139)
Q Consensus        50 lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~---~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~l~~~  126 (139)
                      ++.|..+||++|.+.+..|.+.     ++.+..+|++.+..   +....|...+|.+++  +|+.+.     ..++|.++
T Consensus         3 v~lys~~~Cp~C~~ak~~L~~~-----~i~~~~~~v~~~~~~~~~~~~~g~~~vP~ifi--~g~~ig-----g~~~l~~~   70 (72)
T cd03029           3 VSLFTKPGCPFCARAKAALQEN-----GISYEEIPLGKDITGRSLRAVTGAMTVPQVFI--DGELIG-----GSDDLEKY   70 (72)
T ss_pred             EEEEECCCCHHHHHHHHHHHHc-----CCCcEEEECCCChhHHHHHHHhCCCCcCeEEE--CCEEEe-----CHHHHHHH
Confidence            5678999999999999888753     67777777776543   334468899999865  676442     34556555


Q ss_pred             H
Q 032502          127 V  127 (139)
Q Consensus       127 i  127 (139)
                      |
T Consensus        71 l   71 (72)
T cd03029          71 F   71 (72)
T ss_pred             h
Confidence            4

PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.

>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A

Probab=98.54  E-value=1.2e-06  Score=56.33  Aligned_cols=80  Identities=28%  Similarity=0.501  Sum_probs=60.6

Q ss_pred             CCCEEEEEEeCCCChhhhhhhHhHHHHHHhC--C-CcEEEEEeCCc----------------------------------
Q 032502           45 EGKIVIANFSATWCGPCRMIAPFFSELSEKY--P-SLMFLLVDVDE----------------------------------   87 (139)
Q Consensus        45 ~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~--~-~v~~~~vd~~~----------------------------------   87 (139)
                      ..+++|+.|+...|++|..+.+.+.++.+++  + .+.|+..+...                                  
T Consensus        11 ~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (162)
T PF13462_consen   11 DAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPVPLDKHSSLRAAMAAECVADQGKYFWFFHELLFSQQE   90 (162)
T ss_dssp             TTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEESSSSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHCH
T ss_pred             CCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEccccchhHHHHHHHHHHHHHHhHHHHHHHHHHHHhhh
Confidence            4688999999999999999999999998887  4 47777776620                                  


Q ss_pred             ----------------------------------chhhhhhCCCcceeEEEEEeCCeEEEEEeCC-ChHHHHHHHHH
Q 032502           88 ----------------------------------LVEFSTSWDIKATPTFFFLKDGQQVDKLVGA-NKPELQKKVAA  129 (139)
Q Consensus        88 ----------------------------------~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~i~~  129 (139)
                                                        ......++||.++||+++  ||+.+   .+. +.++|.+.|++
T Consensus        91 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~tPt~~i--nG~~~---~~~~~~~~l~~~Id~  162 (162)
T PF13462_consen   91 NFENKKDIAANAGGSNEQFNKCLNSDEIKAQLEADSQLARQLGITGTPTFFI--NGKYV---VGPYTIEELKELIDK  162 (162)
T ss_dssp             STSSHHHHHHHTTSHHHHHHHHHTSHHHHHHHHHHHHHHHHHT-SSSSEEEE--TTCEE---ETTTSHHHHHHHHHH
T ss_pred             ccchhHHHHHHcCCCHHHHHHHhhchHHHHHHHHHHHHHHHcCCccccEEEE--CCEEe---CCCCCHHHHHHHHcC
Confidence                                              001244578999999999  99874   455 89999988874

...

>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors

Probab=98.53  E-value=1.6e-06  Score=49.76  Aligned_cols=77  Identities=14%  Similarity=0.268  Sum_probs=57.9

Q ss_pred             EEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhhhhhCCCcceeEEEEEeCC--eEEEEEeCC-ChHHHHHH
Q 032502           50 IANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDG--QQVDKLVGA-NKPELQKK  126 (139)
Q Consensus        50 lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g--~~~~~~~g~-~~~~l~~~  126 (139)
                      |++|..+.|+-|..+...|..+.... .+.+..+|+++++++..+|+. .+|.+.+...+  .......+. +.+.|.++
T Consensus         2 l~l~~k~~C~LC~~a~~~L~~~~~~~-~~~l~~vDI~~d~~l~~~Y~~-~IPVl~~~~~~~~~~~~~~~~~~d~~~L~~~   79 (81)
T PF05768_consen    2 LTLYTKPGCHLCDEAKEILEEVAAEF-PFELEEVDIDEDPELFEKYGY-RIPVLHIDGIRQFKEQEELKWRFDEEQLRAW   79 (81)
T ss_dssp             EEEEE-SSSHHHHHHHHHHHHCCTTS-TCEEEEEETTTTHHHHHHSCT-STSEEEETT-GGGCTSEEEESSB-HHHHHHH
T ss_pred             EEEEcCCCCChHHHHHHHHHHHHhhc-CceEEEEECCCCHHHHHHhcC-CCCEEEEcCcccccccceeCCCCCHHHHHHH
Confidence            67899999999999999999876665 489999999999999999996 79998774310  001222355 88999888


Q ss_pred             HH
Q 032502          127 VA  128 (139)
Q Consensus       127 i~  128 (139)
                      |+
T Consensus        80 L~   81 (81)
T PF05768_consen   80 LE   81 (81)
T ss_dssp             HH
T ss_pred             hC
Confidence            74

Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=98.50  E-value=1.6e-06  Score=65.94  Aligned_cols=81  Identities=16%  Similarity=0.375  Sum_probs=67.9

Q ss_pred             CCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhhhhhCCCcceeEEEEEeCCeEEEEEeCC-ChHHHH
Q 032502           46 GKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGA-NKPELQ  124 (139)
Q Consensus        46 ~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~l~  124 (139)
                      ++.-+..|.++.|++|......+++++...|++..-.+|....+++.++|++.++|++++  ||+..  +.|. +.+++.
T Consensus       117 ~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~i~~~~id~~~~~~~~~~~~v~~VP~~~i--~~~~~--~~g~~~~~~~~  192 (515)
T TIGR03140       117 GPLHFETYVSLTCQNCPDVVQALNQMALLNPNISHTMIDGALFQDEVEALGIQGVPAVFL--NGEEF--HNGRMDLAELL  192 (515)
T ss_pred             CCeEEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEchhCHHHHHhcCCcccCEEEE--CCcEE--EecCCCHHHHH
Confidence            445588899999999999999999999999999999999999999999999999999988  66544  3466 777776


Q ss_pred             HHHHHH
Q 032502          125 KKVAAA  130 (139)
Q Consensus       125 ~~i~~~  130 (139)
                      +.+.+.
T Consensus       193 ~~l~~~  198 (515)
T TIGR03140       193 EKLEET  198 (515)
T ss_pred             HHHhhc
Confidence            665543

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]

Probab=98.50  E-value=3.9e-08  Score=66.05  Aligned_cols=92  Identities=22%  Similarity=0.417  Sum_probs=73.3

Q ss_pred             echhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCC--CcEEEEEeCCcchhhhhhCCCcceeEEEEEe
Q 032502           30 TTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP--SLMFLLVDVDELVEFSTSWDIKATPTFFFLK  107 (139)
Q Consensus        30 ~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~  107 (139)
                      .+.++....+      ..--++.|+++||+.|....++++.++.--.  +|.+..+|...++.+.-+|-+...||++-.+
T Consensus        29 ~~eenw~~~l------~gewmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~npgLsGRF~vtaLptIYHvk  102 (248)
T KOG0913|consen   29 IDEENWKELL------TGEWMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTNPGLSGRFLVTALPTIYHVK  102 (248)
T ss_pred             ecccchhhhh------chHHHHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEeccccceeeEEEecceEEEee
Confidence            3455554444      2345788999999999999999988765443  4999999999999999999999999999999


Q ss_pred             CCeEEEEEeCC-ChHHHHHHHH
Q 032502          108 DGQQVDKLVGA-NKPELQKKVA  128 (139)
Q Consensus       108 ~g~~~~~~~g~-~~~~l~~~i~  128 (139)
                      +|.... +.|. +..++..++.
T Consensus       103 DGeFrr-ysgaRdk~dfisf~~  123 (248)
T KOG0913|consen  103 DGEFRR-YSGARDKNDFISFEE  123 (248)
T ss_pred             cccccc-ccCcccchhHHHHHH
Confidence            997654 4466 8888877664

>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]

Probab=98.45  E-value=8.1e-07  Score=59.11  Aligned_cols=93  Identities=15%  Similarity=0.297  Sum_probs=77.6

Q ss_pred             CceEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhhhhhCCCcceeEE
Q 032502           24 GNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTF  103 (139)
Q Consensus        24 ~~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~  103 (139)
                      +.|.++.+..+|-..+... .+.-.++|+.|-+.-+.|..+...+.-++..||-++|+.+-.. +....++|....+|++
T Consensus       138 ~~V~El~~gkqfld~idke-~ks~~i~VhIYEdgi~gcealn~~~~cLAAeyP~vKFckikss-~~gas~~F~~n~lP~L  215 (273)
T KOG3171|consen  138 GFVYELETGKQFLDTIDKE-LKSTTIVVHIYEDGIKGCEALNSSLTCLAAEYPIVKFCKIKSS-NTGASDRFSLNVLPTL  215 (273)
T ss_pred             ceEEEeccchhHHHHHhcc-cceEEEEEEEecCCCchHHHHhhhHHHhhccCCceeEEEeeec-cccchhhhcccCCceE
Confidence            4688889999998888644 2345788999999999999999999999999999999998654 3455788999999999


Q ss_pred             EEEeCCeEEEEEeCC
Q 032502          104 FFLKDGQQVDKLVGA  118 (139)
Q Consensus       104 ~~~~~g~~~~~~~g~  118 (139)
                      ++|++|..+..++..
T Consensus       216 liYkgGeLIgNFv~v  230 (273)
T KOG3171|consen  216 LIYKGGELIGNFVSV  230 (273)
T ss_pred             EEeeCCchhHHHHHH
Confidence            999999988876543

>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A

Probab=98.44  E-value=1.5e-05  Score=52.34  Aligned_cols=95  Identities=15%  Similarity=0.271  Sum_probs=72.4

Q ss_pred             chhHHHHHHHHHhhCCCE-EEEEEeCCCChhhhhhhHhHHHHHHhCCC-cEEEEEeCCcchhhhhhCCCc--ceeEEEEE
Q 032502           31 TKDIWDQKMSEASKEGKI-VIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVDELVEFSTSWDIK--ATPTFFFL  106 (139)
Q Consensus        31 ~~~~~~~~~~~~~~~~k~-vlv~f~~~~C~~C~~~~~~l~~~~~~~~~-v~~~~vd~~~~~~~~~~~~v~--~~Pt~~~~  106 (139)
                      +.+++....    ..+++ +++.|..........+...+.++++++.+ +.|+.+|++..+.+.+.||+.  .+|+++++
T Consensus        83 t~~n~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~f~~~d~~~~~~~~~~~~i~~~~~P~~vi~  158 (184)
T PF13848_consen   83 TPENFEKLF----SSPKPPVLILFDNKDNESTEAFKKELQDIAKKFKGKINFVYVDADDFPRLLKYFGIDEDDLPALVIF  158 (184)
T ss_dssp             STTHHHHHH----STSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTTSEEEEEETTTTHHHHHHTTTTTSSSSEEEEE
T ss_pred             chhhHHHHh----cCCCceEEEEEEcCCchhHHHHHHHHHHHHHhcCCeEEEEEeehHHhHHHHHHcCCCCccCCEEEEE
Confidence            344554444    34445 77777777788889999999999999986 999999999888899999998  99999988


Q ss_pred             e--CCeEEEEEeCC-ChHHHHHHHHH
Q 032502          107 K--DGQQVDKLVGA-NKPELQKKVAA  129 (139)
Q Consensus       107 ~--~g~~~~~~~g~-~~~~l~~~i~~  129 (139)
                      .  +++......+. +.+.|.+|++.
T Consensus       159 ~~~~~~~~~~~~~~~~~~~i~~Fl~d  184 (184)
T PF13848_consen  159 DSNKGKYYYLPEGEITPESIEKFLND  184 (184)
T ss_dssp             ETTTSEEEE--SSCGCHHHHHHHHHH
T ss_pred             ECCCCcEEcCCCCCCCHHHHHHHhcC
Confidence            5  44433333555 88999988863

...

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=98.43  E-value=5.4e-06  Score=63.62  Aligned_cols=107  Identities=21%  Similarity=0.152  Sum_probs=85.0

Q ss_pred             chhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhhhhhCCCcceeEEEEE-eCC
Q 032502           31 TKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFL-KDG  109 (139)
Q Consensus        31 ~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~-~~g  109 (139)
                      ..+++...+.  ...+++.++.|+.+.|..|..+...+++++...+.+.+...|..++..++++|++...|++.++ .+|
T Consensus       353 ~~~~l~~~~~--~l~~~v~l~~~~~~~~~~~~e~~~~l~e~~~~s~~i~~~~~~~~~~~~~~~~~~v~~~P~~~i~~~~~  430 (555)
T TIGR03143       353 LRQQLVGIFG--RLENPVTLLLFLDGSNEKSAELQSFLGEFASLSEKLNSEAVNRGEEPESETLPKITKLPTVALLDDDG  430 (555)
T ss_pred             HHHHHHHHHH--hcCCCEEEEEEECCCchhhHHHHHHHHHHHhcCCcEEEEEeccccchhhHhhcCCCcCCEEEEEeCCC
Confidence            3444444443  2456667888889999999999999999998777788888999999999999999999999998 465


Q ss_pred             eE-EEEEeCC-ChHHHHHHHHHHhhccCCCCC
Q 032502          110 QQ-VDKLVGA-NKPELQKKVAAAVDSVVPSQK  139 (139)
Q Consensus       110 ~~-~~~~~g~-~~~~l~~~i~~~~~~~~~~~k  139 (139)
                      .. --+|.|. ...+|..+|..++....+.++
T Consensus       431 ~~~~i~f~g~P~G~Ef~s~i~~i~~~~~~~~~  462 (555)
T TIGR03143       431 NYTGLKFHGVPSGHELNSFILALYNAAGPGQP  462 (555)
T ss_pred             cccceEEEecCccHhHHHHHHHHHHhcCCCCC
Confidence            43 2567788 889999999999887766543

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]

Probab=98.42  E-value=1.8e-06  Score=56.96  Aligned_cols=102  Identities=16%  Similarity=0.357  Sum_probs=81.1

Q ss_pred             CceEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhhhhhCCCcceeEE
Q 032502           24 GNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTF  103 (139)
Q Consensus        24 ~~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~  103 (139)
                      +.|.+| +..+|.+.++.+ .++-.|||+.|...-+.|.-....|..++.+||.++|+.+-...+-   ..|.-...||+
T Consensus        91 G~V~~I-Sg~dyv~EVT~A-s~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~iKFVki~at~cI---pNYPe~nlPTl  165 (240)
T KOG3170|consen   91 GEVFPI-SGPDYVKEVTKA-SEGVWVVVHLYKQGVPLCALLSHHLQSLACKFPQIKFVKIPATTCI---PNYPESNLPTL  165 (240)
T ss_pred             cceeec-cchHHHHHHHhc-cCccEEEEEeeccccHHHHHHHHHHHHHhhcCCcceEEeccccccc---CCCcccCCCeE
Confidence            456676 455677778777 4577999999999999999999999999999999999998765543   46777889999


Q ss_pred             EEEeCCeEEEEEeCC--------ChHHHHHHHHHH
Q 032502          104 FFLKDGQQVDKLVGA--------NKPELQKKVAAA  130 (139)
Q Consensus       104 ~~~~~g~~~~~~~g~--------~~~~l~~~i~~~  130 (139)
                      ++|..|.+...+.|.        +.+++..++-+.
T Consensus       166 ~VY~~G~lk~q~igll~lgG~n~t~ed~e~~L~qa  200 (240)
T KOG3170|consen  166 LVYHHGALKKQMIGLLELGGMNLTMEDVEDFLVQA  200 (240)
T ss_pred             EEeecchHHhheehhhhhcCCcCCHHHHHHHHHhc
Confidence            999988877665542        567777766554

>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=98.41  E-value=2.5e-06  Score=47.15  Aligned_cols=57  Identities=21%  Similarity=0.384  Sum_probs=42.8

Q ss_pred             EEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhh----hhhCCCcceeEEEEEeCCeEEE
Q 032502           50 IANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEF----STSWDIKATPTFFFLKDGQQVD  113 (139)
Q Consensus        50 lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~----~~~~~v~~~Pt~~~~~~g~~~~  113 (139)
                      ++.|+++||++|+.+...|.+.     ++.+..+|++.+.+.    .+..+...+|++++  +|+.+.
T Consensus         2 v~ly~~~~Cp~C~~~~~~L~~~-----~i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~~--~~~~ig   62 (72)
T cd02066           2 VVVFSKSTCPYCKRAKRLLESL-----GIEFEEIDILEDGELREELKELSGWPTVPQIFI--NGEFIG   62 (72)
T ss_pred             EEEEECCCCHHHHHHHHHHHHc-----CCcEEEEECCCCHHHHHHHHHHhCCCCcCEEEE--CCEEEe
Confidence            4678899999999999998876     377778888776543    33456778898755  776554

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which

>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions

Probab=98.40  E-value=2.3e-06  Score=48.03  Aligned_cols=57  Identities=21%  Similarity=0.457  Sum_probs=44.1

Q ss_pred             EEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchh----hhhhCCCcceeEEEEEeCCeEEE
Q 032502           50 IANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVE----FSTSWDIKATPTFFFLKDGQQVD  113 (139)
Q Consensus        50 lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~----~~~~~~v~~~Pt~~~~~~g~~~~  113 (139)
                      ++.|+.++|++|+++...|++.     ++.+..+|+++++.    +.+..+-..+|++++  +|+.+.
T Consensus         3 v~ly~~~~C~~C~ka~~~L~~~-----gi~~~~~di~~~~~~~~el~~~~g~~~vP~v~i--~~~~iG   63 (73)
T cd03027           3 VTIYSRLGCEDCTAVRLFLREK-----GLPYVEINIDIFPERKAELEERTGSSVVPQIFF--NEKLVG   63 (73)
T ss_pred             EEEEecCCChhHHHHHHHHHHC-----CCceEEEECCCCHHHHHHHHHHhCCCCcCEEEE--CCEEEe
Confidence            4568899999999999998864     67788888887654    455557788999977  776544

GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.

>TIGR02181 GRX_bact Glutaredoxin, GrxC family

Probab=98.40  E-value=1.2e-06  Score=49.99  Aligned_cols=56  Identities=16%  Similarity=0.346  Sum_probs=41.2

Q ss_pred             EEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhh----hhhCCCcceeEEEEEeCCeEE
Q 032502           50 IANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEF----STSWDIKATPTFFFLKDGQQV  112 (139)
Q Consensus        50 lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~----~~~~~v~~~Pt~~~~~~g~~~  112 (139)
                      |..|+.+||++|......|++.     ++.+-.+|++.++..    .+..|...+|++++  +|+.+
T Consensus         1 v~ly~~~~Cp~C~~a~~~L~~~-----~i~~~~~di~~~~~~~~~~~~~~g~~~vP~i~i--~g~~i   60 (79)
T TIGR02181         1 VTIYTKPYCPYCTRAKALLSSK-----GVTFTEIRVDGDPALRDEMMQRSGRRTVPQIFI--GDVHV   60 (79)
T ss_pred             CEEEecCCChhHHHHHHHHHHc-----CCCcEEEEecCCHHHHHHHHHHhCCCCcCEEEE--CCEEE
Confidence            3568899999999999999764     566667777766543    34457889999866  67544

This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.

>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=98.39  E-value=2.4e-06  Score=48.03  Aligned_cols=56  Identities=13%  Similarity=0.263  Sum_probs=41.8

Q ss_pred             EEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhh----hhhCCCc-ceeEEEEEeCCeEE
Q 032502           50 IANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEF----STSWDIK-ATPTFFFLKDGQQV  112 (139)
Q Consensus        50 lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~----~~~~~v~-~~Pt~~~~~~g~~~  112 (139)
                      ++.|+.++|++|..+...|++.     ++.|..+|++.+++.    .+.++.. ++|++++  +|+.+
T Consensus         2 i~ly~~~~Cp~C~~ak~~L~~~-----~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~i--~g~~i   62 (75)
T cd03418           2 VEIYTKPNCPYCVRAKALLDKK-----GVDYEEIDVDGDPALREEMINRSGGRRTVPQIFI--GDVHI   62 (75)
T ss_pred             EEEEeCCCChHHHHHHHHHHHC-----CCcEEEEECCCCHHHHHHHHHHhCCCCccCEEEE--CCEEE
Confidence            4678899999999999988764     677778888776443    3345666 8998876  77654

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i

>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long

Probab=98.34  E-value=8e-06  Score=49.13  Aligned_cols=85  Identities=16%  Similarity=0.249  Sum_probs=62.5

Q ss_pred             hhHHHHHHHHHhhCCCEEEEEEeCCCC---hhhhhhhHhHHHHHHhCCC-cEEEEEeCCcchhhhhhCCCcceeEEEEEe
Q 032502           32 KDIWDQKMSEASKEGKIVIANFSATWC---GPCRMIAPFFSELSEKYPS-LMFLLVDVDELVEFSTSWDIKATPTFFFLK  107 (139)
Q Consensus        32 ~~~~~~~~~~~~~~~k~vlv~f~~~~C---~~C~~~~~~l~~~~~~~~~-v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~  107 (139)
                      .++++..+.    .....++ |++..|   +.+....-.+.++.+.+++ +....++......+..+||+..+|++++++
T Consensus        16 ~~~ld~~l~----~~~~~vl-f~~gDp~r~~E~~DvaVILPEL~~af~~~~~~avv~~~~e~~L~~r~gv~~~PaLvf~R   90 (107)
T PF07449_consen   16 ADTLDAFLA----APGDAVL-FFAGDPARFPETADVAVILPELVKAFPGRFRGAVVARAAERALAARFGVRRWPALVFFR   90 (107)
T ss_dssp             CCCHHHHHH----CCSCEEE-EESS-TTTSTTCCHHHHHHHHHHCTSTTSEEEEEEEHHHHHHHHHHHT-TSSSEEEEEE
T ss_pred             hhhHHHHHh----CCCcEEE-EECCCCCcCcccccceeEcHHHHHhhhCccceEEECchhHHHHHHHhCCccCCeEEEEE
Confidence            455555553    3444444 555545   4555566688999999987 667777877888999999999999999999


Q ss_pred             CCeEEEEEeCC-ChH
Q 032502          108 DGQQVDKLVGA-NKP  121 (139)
Q Consensus       108 ~g~~~~~~~g~-~~~  121 (139)
                      +|+.+....|. +..
T Consensus        91 ~g~~lG~i~gi~dW~  105 (107)
T PF07449_consen   91 DGRYLGAIEGIRDWA  105 (107)
T ss_dssp             TTEEEEEEESSSTHH
T ss_pred             CCEEEEEecCeeccc
Confidence            99999999887 544

This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.

>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol

Probab=98.33  E-value=3.6e-06  Score=54.24  Aligned_cols=80  Identities=16%  Similarity=0.243  Sum_probs=54.6

Q ss_pred             HHHHh-hCCCEEEEEEe-CCCChhhhhh-hHhHHHHHHhCC--Cc-EEEEEeCCc-----------------------ch
Q 032502           39 MSEAS-KEGKIVIANFS-ATWCGPCRMI-APFFSELSEKYP--SL-MFLLVDVDE-----------------------LV   89 (139)
Q Consensus        39 ~~~~~-~~~k~vlv~f~-~~~C~~C~~~-~~~l~~~~~~~~--~v-~~~~vd~~~-----------------------~~   89 (139)
                      +.+.. ..++++||+|| +.||+.|... .+.|.+.++++.  ++ .++.+..|.                       +.
T Consensus        21 v~L~~~~~gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D~~~~~~~~~~~~~~~~~f~lLsD~~~  100 (155)
T cd03013          21 VNLSELFKGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVNDPFVMKAWGKALGAKDKIRFLADGNG  100 (155)
T ss_pred             eeHHHHhCCCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECCCHHHHHHHHHhhCCCCcEEEEECCCH
Confidence            44444 35677777777 8999999998 999988888875  56 577777753                       23


Q ss_pred             hhhhhCCCc------c-----eeEEEEEeCCeEEEEEeCC
Q 032502           90 EFSTSWDIK------A-----TPTFFFLKDGQQVDKLVGA  118 (139)
Q Consensus        90 ~~~~~~~v~------~-----~Pt~~~~~~g~~~~~~~g~  118 (139)
                      .+++.||+.      +     ...++++.+|++++.+...
T Consensus       101 ~~~~~ygv~~~~~~~~~~~~~~R~~fiId~g~I~~~~~~~  140 (155)
T cd03013         101 EFTKALGLTLDLSAAGGGIRSKRYALIVDDGKVKYLFVEE  140 (155)
T ss_pred             HHHHHcCCCccccccCCcceeeeEEEEECCCEEEEEEEec
Confidence            456777762      1     2344455578888876554

The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases

>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]

Probab=98.25  E-value=6.9e-06  Score=47.06  Aligned_cols=54  Identities=17%  Similarity=0.378  Sum_probs=40.2

Q ss_pred             EEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcch-----hhhhhC-CCcceeEEEEEeCCe
Q 032502           50 IANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELV-----EFSTSW-DIKATPTFFFLKDGQ  110 (139)
Q Consensus        50 lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~-----~~~~~~-~v~~~Pt~~~~~~g~  110 (139)
                      ++.|..++||+|.+....|.+.     ++.|..++.+.+.     +..++- |.+.+|++++  +|+
T Consensus         3 v~iyt~~~CPyC~~ak~~L~~~-----g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i--~~~   62 (80)
T COG0695           3 VTIYTKPGCPYCKRAKRLLDRK-----GVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFI--GGK   62 (80)
T ss_pred             EEEEECCCCchHHHHHHHHHHc-----CCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEE--CCE
Confidence            5668899999999999988744     6666676666544     333444 7899999988  665

>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []

Probab=98.23  E-value=4.3e-05  Score=54.56  Aligned_cols=109  Identities=12%  Similarity=0.243  Sum_probs=73.0

Q ss_pred             ccCCCceEEeechhHHHHHHHHHhhCCCEEEEEEeCCCCh--hhhhhh---HhHHHHHHhC---CCcEEEEEeCCcchhh
Q 032502           20 EFAGGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCG--PCRMIA---PFFSELSEKY---PSLMFLLVDVDELVEF   91 (139)
Q Consensus        20 ~~~~~~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~--~C~~~~---~~l~~~~~~~---~~v~~~~vd~~~~~~~   91 (139)
                      ...|..-..-.+.++|.+.+    ++-+.++|+|+.+--.  ..++..   ..+-+++.+.   .++.|..||..++..+
T Consensus        29 ~YDGkDRVi~LneKNfk~~l----Kkyd~l~l~yh~p~~~dk~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~Kd~kl  104 (383)
T PF01216_consen   29 EYDGKDRVIDLNEKNFKRAL----KKYDVLVLYYHEPVESDKVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSKKDAKL  104 (383)
T ss_dssp             S-SSS--CEEE-TTTHHHHH----HH-SEEEEEEE--STSSHHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETTTTHHH
T ss_pred             cCCCccceEEcchhHHHHHH----HhhcEEEEEEecCCccCHHHHHHHHHHHHHHHHHHHhccccCcceEEeccHHHHHH
Confidence            44454433344777888877    4557888999977543  222222   3233333332   3699999999999999


Q ss_pred             hhhCCCcceeEEEEEeCCeEEEEEeCC-ChHHHHHHHHHHhhc
Q 032502           92 STSWDIKATPTFFFLKDGQQVDKLVGA-NKPELQKKVAAAVDS  133 (139)
Q Consensus        92 ~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~i~~~~~~  133 (139)
                      ++++|+...+++.+|++|+++... |. +++.|..||..++..
T Consensus       105 AKKLgv~E~~SiyVfkd~~~IEyd-G~~saDtLVeFl~dl~ed  146 (383)
T PF01216_consen  105 AKKLGVEEEGSIYVFKDGEVIEYD-GERSADTLVEFLLDLLED  146 (383)
T ss_dssp             HHHHT--STTEEEEEETTEEEEE--S--SHHHHHHHHHHHHSS
T ss_pred             HHhcCccccCcEEEEECCcEEEec-CccCHHHHHHHHHHhccc
Confidence            999999999999999999998876 76 999999999998763

It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.

>TIGR00365 monothiol glutaredoxin, Grx4 family

Probab=98.23  E-value=1.8e-05  Score=47.00  Aligned_cols=61  Identities=18%  Similarity=0.237  Sum_probs=42.7

Q ss_pred             CCEEEEEEe----CCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhh----hhhCCCcceeEEEEEeCCeEEE
Q 032502           46 GKIVIANFS----ATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEF----STSWDIKATPTFFFLKDGQQVD  113 (139)
Q Consensus        46 ~k~vlv~f~----~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~----~~~~~v~~~Pt~~~~~~g~~~~  113 (139)
                      +.+|+|+-.    .+|||+|.+....|.+.     ++.|..+|+++++++    .+..|-..+|.+++  +|+.+.
T Consensus        11 ~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~-----~i~~~~~di~~~~~~~~~l~~~tg~~tvP~vfi--~g~~iG   79 (97)
T TIGR00365        11 ENPVVLYMKGTPQFPQCGFSARAVQILKAC-----GVPFAYVNVLEDPEIRQGIKEYSNWPTIPQLYV--KGEFVG   79 (97)
T ss_pred             cCCEEEEEccCCCCCCCchHHHHHHHHHHc-----CCCEEEEECCCCHHHHHHHHHHhCCCCCCEEEE--CCEEEe
Confidence            345555433    28999999999998775     567778888766543    34456778999876  776543

The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.

>PRK10638 glutaredoxin 3; Provisional

Probab=98.21  E-value=9.4e-06  Score=46.73  Aligned_cols=57  Identities=14%  Similarity=0.322  Sum_probs=42.5

Q ss_pred             EEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchh----hhhhCCCcceeEEEEEeCCeEEE
Q 032502           50 IANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVE----FSTSWDIKATPTFFFLKDGQQVD  113 (139)
Q Consensus        50 lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~----~~~~~~v~~~Pt~~~~~~g~~~~  113 (139)
                      ++.|..+||++|++....|++.     ++.+..+|++.+++    +.+..|...+|++++  +|+.+.
T Consensus         4 v~ly~~~~Cp~C~~a~~~L~~~-----gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i~~--~g~~ig   64 (83)
T PRK10638          4 VEIYTKATCPFCHRAKALLNSK-----GVSFQEIPIDGDAAKREEMIKRSGRTTVPQIFI--DAQHIG   64 (83)
T ss_pred             EEEEECCCChhHHHHHHHHHHc-----CCCcEEEECCCCHHHHHHHHHHhCCCCcCEEEE--CCEEEe
Confidence            5568899999999999998765     56677778876653    344557889998866  676554

>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins

Probab=98.14  E-value=1.7e-05  Score=46.48  Aligned_cols=60  Identities=20%  Similarity=0.315  Sum_probs=41.7

Q ss_pred             CCEEEEEEeC----CCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhh----hhhCCCcceeEEEEEeCCeEE
Q 032502           46 GKIVIANFSA----TWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEF----STSWDIKATPTFFFLKDGQQV  112 (139)
Q Consensus        46 ~k~vlv~f~~----~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~----~~~~~v~~~Pt~~~~~~g~~~  112 (139)
                      +.+|+|+-.+    +||++|......|.+.     ++.|..+|++.++++    .+..|-..+|++++  +|+.+
T Consensus         7 ~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~-----~i~y~~idv~~~~~~~~~l~~~~g~~tvP~vfi--~g~~i   74 (90)
T cd03028           7 ENPVVLFMKGTPEEPRCGFSRKVVQILNQL-----GVDFGTFDILEDEEVRQGLKEYSNWPTFPQLYV--NGELV   74 (90)
T ss_pred             cCCEEEEEcCCCCCCCCcHHHHHHHHHHHc-----CCCeEEEEcCCCHHHHHHHHHHhCCCCCCEEEE--CCEEE
Confidence            4455554332    7999999999988776     466777787766544    34457789999855  77643

The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein

>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

Probab=98.14  E-value=0.00014  Score=45.51  Aligned_cols=107  Identities=13%  Similarity=0.267  Sum_probs=74.9

Q ss_pred             ceEEeechhHHHHHHHHHhhCCCEEEEEEeCC--CCh-hh-hhhhHhHHHHHHhCCC--cEEEEEeCCcchhhhhhCCCc
Q 032502           25 NVSLVTTKDIWDQKMSEASKEGKIVIANFSAT--WCG-PC-RMIAPFFSELSEKYPS--LMFLLVDVDELVEFSTSWDIK   98 (139)
Q Consensus        25 ~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~--~C~-~C-~~~~~~l~~~~~~~~~--v~~~~vd~~~~~~~~~~~~v~   98 (139)
                      .+.++.+.+.++..=.    +++.-+|.|.-.  .|. .+ ......|.++++++.+  +.|+.+|.+....+.+.||+.
T Consensus         3 ~~~~l~~~~~~~~~C~----~~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~~~~~~~~fgl~   78 (130)
T cd02983           3 EIIELTSEDVFEETCE----EKQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGAQLDLEEALNIG   78 (130)
T ss_pred             ceEEecCHHHHHhhcc----CCCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCcccHHHHHHcCCC
Confidence            4566666665554331    245555555432  233 23 3567889999999974  899999999999999999985


Q ss_pred             --ceeEEEEEeCCeEEEE-EeCC-ChHHHHHHHHHHhhccC
Q 032502           99 --ATPTFFFLKDGQQVDK-LVGA-NKPELQKKVAAAVDSVV  135 (139)
Q Consensus        99 --~~Pt~~~~~~g~~~~~-~~g~-~~~~l~~~i~~~~~~~~  135 (139)
                        .+|+++++...+..+. +.|. +.+.+.+|+++++....
T Consensus        79 ~~~~P~v~i~~~~~~KY~~~~~~~t~e~i~~Fv~~~l~Gkl  119 (130)
T cd02983          79 GFGYPAMVAINFRKMKFATLKGSFSEDGINEFLRELSYGRG  119 (130)
T ss_pred             ccCCCEEEEEecccCccccccCccCHHHHHHHHHHHHcCCc
Confidence              5999999843332333 4466 99999999999987654

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.

>PRK10824 glutaredoxin-4; Provisional

Probab=98.08  E-value=2.2e-05  Score=48.02  Aligned_cols=51  Identities=20%  Similarity=0.262  Sum_probs=36.8

Q ss_pred             CCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhhhh----hCCCcceeEEEEEeCCeEEE
Q 032502           56 TWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFST----SWDIKATPTFFFLKDGQQVD  113 (139)
Q Consensus        56 ~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~----~~~v~~~Pt~~~~~~g~~~~  113 (139)
                      ||||+|++....|..+     ++.+..+|++.++++..    .-|-..+|.+++  +|+.+.
T Consensus        28 p~Cpyc~~ak~lL~~~-----~i~~~~idi~~d~~~~~~l~~~sg~~TVPQIFI--~G~~IG   82 (115)
T PRK10824         28 PSCGFSAQAVQALSAC-----GERFAYVDILQNPDIRAELPKYANWPTFPQLWV--DGELVG   82 (115)
T ss_pred             CCCchHHHHHHHHHHc-----CCCceEEEecCCHHHHHHHHHHhCCCCCCeEEE--CCEEEc
Confidence            6999999999988776     45555667766554433    346678999888  887664

>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]

Probab=97.92  E-value=5.3e-05  Score=58.45  Aligned_cols=93  Identities=18%  Similarity=0.261  Sum_probs=64.3

Q ss_pred             HHHHHhhCCCEEEEEEeCCCChhhhhhhH------hHHHHHHhCCCcEEEEEeCCcchhhhhhCC--------CcceeEE
Q 032502           38 KMSEASKEGKIVIANFSATWCGPCRMIAP------FFSELSEKYPSLMFLLVDVDELVEFSTSWD--------IKATPTF  103 (139)
Q Consensus        38 ~~~~~~~~~k~vlv~f~~~~C~~C~~~~~------~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~--------v~~~Pt~  103 (139)
                      .+..+...+||++|-+...||.+|+.|..      .+.++.++  ++.=+.||.++.|++-+.|.        -.++|-.
T Consensus        35 Af~~A~~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~--~FV~IKVDREERPDvD~~Ym~~~q~~tG~GGWPLt  112 (667)
T COG1331          35 AFAKAKEEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNE--NFVPVKVDREERPDVDSLYMNASQAITGQGGWPLT  112 (667)
T ss_pred             HHHHHHHhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHh--CceeeeEChhhccCHHHHHHHHHHHhccCCCCcee
Confidence            34555578999999999999999999864      33444333  36667788888888766664        5689977


Q ss_pred             EEE-eCCeEEEEEeCCCh------HHHHHHHHHHhh
Q 032502          104 FFL-KDGQQVDKLVGANK------PELQKKVAAAVD  132 (139)
Q Consensus       104 ~~~-~~g~~~~~~~g~~~------~~l~~~i~~~~~  132 (139)
                      ++. .+|++.........      ..|...|.++..
T Consensus       113 VfLTPd~kPFfagTY~P~e~r~g~pGf~~lL~~i~~  148 (667)
T COG1331         113 VFLTPDGKPFFAGTYFPKEDRYGRPGFKQLLEAIRE  148 (667)
T ss_pred             EEECCCCceeeeeeecCCcccCCCcCHHHHHHHHHH
Confidence            766 99998875433322      345555555443

>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]

Probab=97.87  E-value=0.00017  Score=45.91  Aligned_cols=95  Identities=16%  Similarity=0.259  Sum_probs=67.8

Q ss_pred             HHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCC--cEEEEEeCCc--------chhh---h-hhCCCc----
Q 032502           37 QKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS--LMFLLVDVDE--------LVEF---S-TSWDIK----   98 (139)
Q Consensus        37 ~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~--v~~~~vd~~~--------~~~~---~-~~~~v~----   98 (139)
                      +.+.+...++|++||.-.|+-|+... ....|+.++++|.+  +.++..-|.+        +.++   | ..|||+    
T Consensus        16 ~~~~l~~~~GkVlLIVNtASkCGfTp-QYegLe~Ly~ky~~~Gf~VLgFPcNQF~~QEPg~~eEI~~fC~~~YgVtFp~f   94 (162)
T COG0386          16 EPVSLSDYKGKVLLIVNTASKCGFTP-QYEGLEALYKKYKDKGFEVLGFPCNQFGGQEPGSDEEIAKFCQLNYGVTFPMF   94 (162)
T ss_pred             CCccHHHhCCcEEEEEEcccccCCcH-hHHHHHHHHHHHhhCCcEEEeccccccccCCCCCHHHHHHHHHhccCceeeee
Confidence            44566678899999999999999866 66778888888874  6655555532        1111   1 133331    


Q ss_pred             --------------------------------ceeEEEEEeCCeEEEEEeCC-ChHHHHHHHHHHhh
Q 032502           99 --------------------------------ATPTFFFLKDGQQVDKLVGA-NKPELQKKVAAAVD  132 (139)
Q Consensus        99 --------------------------------~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~i~~~~~  132 (139)
                                                      .+=-|++.++|+++.|+... .++++...|+++|+
T Consensus        95 ~Ki~VnG~~a~PLy~~L~~~~~g~~~~~~IkWNFtKFLvdr~G~VV~Rf~p~t~P~d~~~~Ie~lL~  161 (162)
T COG0386          95 SKIDVNGKNAHPLYKYLKEQKPGKLGGKDIKWNFTKFLVDRDGNVVKRFSPKTKPEDIELAIEKLLA  161 (162)
T ss_pred             eEEeecCCCCCcHHHHHHhcCCCCccCCccceeeEEEEEcCCCcEEEeeCCCCChhhHHHHHHHHhc
Confidence                                            12247777999999999887 88999999998875

>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention

Probab=97.87  E-value=0.00027  Score=43.00  Aligned_cols=86  Identities=13%  Similarity=0.038  Sum_probs=63.1

Q ss_pred             CCCEEEEEEeCCCChhhhhhhHhHHHHHHh---CCC-cEEEEEeCCcchhhhhhCCCcc--eeEEEEEeCCe-EEEE-Ee
Q 032502           45 EGKIVIANFSATWCGPCRMIAPFFSELSEK---YPS-LMFLLVDVDELVEFSTSWDIKA--TPTFFFLKDGQ-QVDK-LV  116 (139)
Q Consensus        45 ~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~---~~~-v~~~~vd~~~~~~~~~~~~v~~--~Pt~~~~~~g~-~~~~-~~  116 (139)
                      ++.+..+.|+  .-..-......+.+++++   +.+ +.|+.+|.+......+.||+..  +|.+.+..... .... ..
T Consensus        15 ~~~~~~~l~f--~~~~~~~~~~~~~~vAk~~~~~kgki~Fv~~d~~~~~~~~~~fgl~~~~~P~i~i~~~~~~~Ky~~~~   92 (111)
T cd03072          15 EGLPFLILFH--DKDDLESLKEFKQAVARQLISEKGAINFLTADGDKFRHPLLHLGKTPADLPVIAIDSFRHMYLFPDFE   92 (111)
T ss_pred             CCCCeEEEEe--cchHHHHHHHHHHHHHHHHHhcCceEEEEEEechHhhhHHHHcCCCHhHCCEEEEEcchhcCcCCCCc
Confidence            3444555555  222346788899999999   876 9999999999887899999986  89999884322 1222 33


Q ss_pred             CC-ChHHHHHHHHHHhh
Q 032502          117 GA-NKPELQKKVAAAVD  132 (139)
Q Consensus       117 g~-~~~~l~~~i~~~~~  132 (139)
                      +. +.+.|.++++++++
T Consensus        93 ~~~t~~~i~~Fv~~~~~  109 (111)
T cd03072          93 DVYVPGKLKQFVLDLHS  109 (111)
T ss_pred             cccCHHHHHHHHHHHhc
Confidence            44 88999999998875

It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.

>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins

Probab=97.86  E-value=6.7e-05  Score=43.67  Aligned_cols=58  Identities=17%  Similarity=0.257  Sum_probs=41.9

Q ss_pred             EEEEeCCCChhhhhhhHhHHHHHHhCC-CcEEEEEeC--Ccc------------------------------hhhhhhCC
Q 032502           50 IANFSATWCGPCRMIAPFFSELSEKYP-SLMFLLVDV--DEL------------------------------VEFSTSWD   96 (139)
Q Consensus        50 lv~f~~~~C~~C~~~~~~l~~~~~~~~-~v~~~~vd~--~~~------------------------------~~~~~~~~   96 (139)
                      +..|+.+.|++|..+.+.+.++....+ ++.+.....  ...                              ......+|
T Consensus         1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g   80 (98)
T cd02972           1 IVEFFDPLCPYCYLFEPELEKLLYADDGGVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALARALG   80 (98)
T ss_pred             CeEEECCCCHhHHhhhHHHHHHHhhcCCcEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHcC
Confidence            467999999999999999999875554 355544432  221                              23456789


Q ss_pred             CcceeEEEEEe
Q 032502           97 IKATPTFFFLK  107 (139)
Q Consensus        97 v~~~Pt~~~~~  107 (139)
                      +.++|++++..
T Consensus        81 ~~g~Pt~v~~~   91 (98)
T cd02972          81 VTGTPTFVVNG   91 (98)
T ss_pred             CCCCCEEEECC
Confidence            99999999943

Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.

>PTZ00062 glutaredoxin; Provisional

Probab=97.81  E-value=0.00023  Score=47.87  Aligned_cols=72  Identities=10%  Similarity=0.200  Sum_probs=46.0

Q ss_pred             HHHHHHHHhhCCCEEEEEE---eCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhhhh----hCCCcceeEEEEEe
Q 032502           35 WDQKMSEASKEGKIVIANF---SATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFST----SWDIKATPTFFFLK  107 (139)
Q Consensus        35 ~~~~~~~~~~~~k~vlv~f---~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~----~~~v~~~Pt~~~~~  107 (139)
                      ....+.....+++++|..=   +.|+|++|++....|++.     ++.|..+|+++++++.+    ..|-..+|.+++  
T Consensus       102 ~~~~v~~li~~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~-----~i~y~~~DI~~d~~~~~~l~~~sg~~TvPqVfI--  174 (204)
T PTZ00062        102 TVEKIERLIRNHKILLFMKGSKTFPFCRFSNAVVNMLNSS-----GVKYETYNIFEDPDLREELKVYSNWPTYPQLYV--  174 (204)
T ss_pred             HHHHHHHHHhcCCEEEEEccCCCCCCChhHHHHHHHHHHc-----CCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEEE--
Confidence            3344444444444333322   237999999999888765     67777888887665433    345678898887  


Q ss_pred             CCeEEE
Q 032502          108 DGQQVD  113 (139)
Q Consensus       108 ~g~~~~  113 (139)
                      +|+.+.
T Consensus       175 ~G~~IG  180 (204)
T PTZ00062        175 NGELIG  180 (204)
T ss_pred             CCEEEc
Confidence            776553

>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]

Probab=97.74  E-value=0.00024  Score=42.66  Aligned_cols=62  Identities=23%  Similarity=0.304  Sum_probs=40.4

Q ss_pred             CCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcch-h----hhhhCCCcceeEEEEEeCCeEEE
Q 032502           46 GKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELV-E----FSTSWDIKATPTFFFLKDGQQVD  113 (139)
Q Consensus        46 ~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~-~----~~~~~~v~~~Pt~~~~~~g~~~~  113 (139)
                      ..+| |.|..+||++|+.+...|.++   -....++.+|.+.+. +    +.+.-+-+.+|.+++  +|+.+.
T Consensus        13 ~~~V-VifSKs~C~~c~~~k~ll~~~---~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI--~Gk~iG   79 (104)
T KOG1752|consen   13 ENPV-VIFSKSSCPYCHRAKELLSDL---GVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFI--GGKFIG   79 (104)
T ss_pred             cCCE-EEEECCcCchHHHHHHHHHhC---CCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEE--CCEEEc
Confidence            3344 559999999999988888772   113555555555432 2    233334668999888  887663

>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=97.72  E-value=0.0004  Score=47.87  Aligned_cols=36  Identities=14%  Similarity=0.237  Sum_probs=26.7

Q ss_pred             CEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEE
Q 032502           47 KIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLL   82 (139)
Q Consensus        47 k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~   82 (139)
                      +++++.|+...|++|++..+.+.+.....++++++.
T Consensus        85 ~v~v~~f~d~~Cp~C~~~~~~l~~~~i~~~~~~~~~  120 (244)
T COG1651          85 PVTVVEFFDYTCPYCKEAFPELKKKYIDDGKVRLVL  120 (244)
T ss_pred             CceEEEEecCcCccHHHHHHHHHHHhhhcCCCceEE
Confidence            677888888888888888888877666666544433

>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional

Probab=97.69  E-value=0.00018  Score=53.43  Aligned_cols=56  Identities=18%  Similarity=0.421  Sum_probs=42.6

Q ss_pred             EEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhhhh---h---------CCCcceeEEEEEeCCeEE
Q 032502           50 IANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFST---S---------WDIKATPTFFFLKDGQQV  112 (139)
Q Consensus        50 lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~---~---------~~v~~~Pt~~~~~~g~~~  112 (139)
                      |+.|..+|||+|++....|.+.     ++.|..+|+++++...+   +         .|...+|++++  +|+.+
T Consensus         4 V~vys~~~Cp~C~~aK~~L~~~-----gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi--~~~~i   71 (410)
T PRK12759          4 VRIYTKTNCPFCDLAKSWFGAN-----DIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFV--GDVHI   71 (410)
T ss_pred             EEEEeCCCCHHHHHHHHHHHHC-----CCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEE--CCEEE
Confidence            5679999999999999988775     78888888886663221   2         47789999977  66543

>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=97.69  E-value=0.0013  Score=38.62  Aligned_cols=91  Identities=13%  Similarity=0.134  Sum_probs=61.6

Q ss_pred             EeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCC-CcEEEEEeCCcchhhhhhCCCcceeEEEEE
Q 032502           28 LVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP-SLMFLLVDVDELVEFSTSWDIKATPTFFFL  106 (139)
Q Consensus        28 ~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~-~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~  106 (139)
                      .+.+.++.+..+    ..+++++|-|+..+++   .....+.++++.+. ++.|..+.   +..+.+.+++.. |+++++
T Consensus         3 ~i~s~~~l~~~~----~~~~~~vvg~f~~~~~---~~~~~f~~~A~~~r~~~~F~~~~---~~~~~~~~~~~~-~~i~l~   71 (97)
T cd02981           3 ELTSKEELEKFL----DKDDVVVVGFFKDEES---EEYKTFEKVAESLRDDYGFGHTS---DKEVAKKLKVKP-GSVVLF   71 (97)
T ss_pred             ecCCHHHHHHHh----ccCCeEEEEEECCCCc---HHHHHHHHHHHhcccCCeEEEEC---hHHHHHHcCCCC-CceEEe
Confidence            344555555433    4578888999998887   46677788888885 58776665   456777777754 888888


Q ss_pred             eCC-eEEEEEeCC-ChHHHHHHHHH
Q 032502          107 KDG-QQVDKLVGA-NKPELQKKVAA  129 (139)
Q Consensus       107 ~~g-~~~~~~~g~-~~~~l~~~i~~  129 (139)
                      +.. .....+.|. +.+.|.+||..
T Consensus        72 ~~~~~~~~~y~g~~~~~~l~~fi~~   96 (97)
T cd02981          72 KPFEEEPVEYDGEFTEESLVEFIKD   96 (97)
T ss_pred             CCcccCCccCCCCCCHHHHHHHHHh
Confidence            542 222335565 77888888753

Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai

>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []

Probab=97.65  E-value=0.00067  Score=44.84  Aligned_cols=32  Identities=25%  Similarity=0.497  Sum_probs=27.5

Q ss_pred             EEEEEeCCCChhhhhhhHhHHHHHHhCCCcEE
Q 032502           49 VIANFSATWCGPCRMIAPFFSELSEKYPSLMF   80 (139)
Q Consensus        49 vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~   80 (139)
                      .|.+|+..-||+|....+.+.++.+.++++.+
T Consensus         1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i   32 (193)
T PF01323_consen    1 TIEFFFDFICPWCYLASPRLRKLRAEYPDVEI   32 (193)
T ss_dssp             EEEEEEBTTBHHHHHHHHHHHHHHHHHTTCEE
T ss_pred             CEEEEEeCCCHHHHHHHHHHHHHHHHhcCCcE
Confidence            36789999999999999999999999865444

The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....

>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI

Probab=97.65  E-value=0.00069  Score=41.22  Aligned_cols=74  Identities=8%  Similarity=0.073  Sum_probs=54.5

Q ss_pred             CChhhhhhhHhHHHHHHhCC-C-cEEEEEeCCcchhhhhhCCCcc----eeEEEEEeCCeEEEEEe-CC-ChHHHHHHHH
Q 032502           57 WCGPCRMIAPFFSELSEKYP-S-LMFLLVDVDELVEFSTSWDIKA----TPTFFFLKDGQQVDKLV-GA-NKPELQKKVA  128 (139)
Q Consensus        57 ~C~~C~~~~~~l~~~~~~~~-~-v~~~~vd~~~~~~~~~~~~v~~----~Pt~~~~~~g~~~~~~~-g~-~~~~l~~~i~  128 (139)
                      .-..-......+.+++++++ + +.|+.+|.++.....+.||+..    +|++.+........... .. +.+.|.++++
T Consensus        29 ~~~~~~~~~~~~~~vAk~fk~gki~Fv~~D~~~~~~~l~~fgl~~~~~~~P~~~i~~~~~~KY~~~~~~~t~e~i~~F~~  108 (111)
T cd03073          29 NPKGTNYWRNRVLKVAKDFPDRKLNFAVADKEDFSHELEEFGLDFSGGEKPVVAIRTAKGKKYVMEEEFSDVDALEEFLE  108 (111)
T ss_pred             ChhHHHHHHHHHHHHHHHCcCCeEEEEEEcHHHHHHHHHHcCCCcccCCCCEEEEEeCCCCccCCCcccCCHHHHHHHHH
Confidence            33445678899999999998 4 9999999998877889999974    99999884322112121 23 6688888887


Q ss_pred             HH
Q 032502          129 AA  130 (139)
Q Consensus       129 ~~  130 (139)
                      +.
T Consensus       109 ~f  110 (111)
T cd03073         109 DF  110 (111)
T ss_pred             Hh
Confidence            65

They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei

>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]

Probab=97.60  E-value=0.00043  Score=46.73  Aligned_cols=106  Identities=16%  Similarity=0.244  Sum_probs=73.4

Q ss_pred             EeechhHHHHHHHHHhhCCCEEEEEEeCCCCh-hhhhhhHhHHHHHHhCC-----Cc--EEEEEeCCcc-----------
Q 032502           28 LVTTKDIWDQKMSEASKEGKIVIANFSATWCG-PCRMIAPFFSELSEKYP-----SL--MFLLVDVDEL-----------   88 (139)
Q Consensus        28 ~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~-~C~~~~~~l~~~~~~~~-----~v--~~~~vd~~~~-----------   88 (139)
                      ++...++..+.+.+...++++++|+|.=+.|+ .|-.....+..+.++..     ++  .++.+|.+.+           
T Consensus        49 ~f~l~d~~G~~~~~~~l~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y~~~  128 (207)
T COG1999          49 DFELTDQDGKPFTLKDLKGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKKYAEL  128 (207)
T ss_pred             ceeeecCCCCEeeccccCCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHHHhcc
Confidence            34555666666777767899999999988898 89999998888877765     24  4455555321           


Q ss_pred             ----------------hhhhhhCCCcc--e-------------eEEEEE-eCCeEEEEEeCC-ChHHHHHHHHHHhhc
Q 032502           89 ----------------VEFSTSWDIKA--T-------------PTFFFL-KDGQQVDKLVGA-NKPELQKKVAAAVDS  133 (139)
Q Consensus        89 ----------------~~~~~~~~v~~--~-------------Pt~~~~-~~g~~~~~~~g~-~~~~l~~~i~~~~~~  133 (139)
                                      .++++.|+|..  +             ..++++ .+|++...+.+. .++.+.+.|..+++.
T Consensus       129 ~~~~~~~~ltg~~~~~~~~~k~~~V~~~~v~~~~~~~y~~~Hs~~~~lid~~G~~~~~~~~~~~~~~i~~~l~~l~~~  206 (207)
T COG1999         129 NFDPRWIGLTGTPEQIEEVAKAYGVFYSKVPLDDSQNYTIDHSAGFYLIDADGRFLGTYDYGEPPEEIAADLKKLLKE  206 (207)
T ss_pred             cCCCCeeeeeCCHHHHHHHHHHhcceeeecccCCCCCceeeeeeEEEEECCCCeEEEEecCCCChHHHHHHHHHHhhc
Confidence                            22345555542  1             133444 799999888777 788899988888753

>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1

Probab=97.60  E-value=0.00042  Score=47.32  Aligned_cols=90  Identities=24%  Similarity=0.429  Sum_probs=63.3

Q ss_pred             HHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCC-cEEEEEeCCc------------------chh---------
Q 032502           39 MSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVDE------------------LVE---------   90 (139)
Q Consensus        39 ~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~-v~~~~vd~~~------------------~~~---------   90 (139)
                      +......++|.||.|.+-.||.-..-...++++.++|.+ +.|+.|-+.+                  +..         
T Consensus        95 ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~adFl~VYI~EAHpsDgW~~~~~~~~i~qh~sledR~~aA~  174 (237)
T PF00837_consen   95 ILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDVADFLIVYIEEAHPSDGWAFGNNPYEIPQHRSLEDRLRAAK  174 (237)
T ss_pred             HHHhccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhhhheehhhHhhhCcCCCccCCCCceeecCCCCHHHHHHHHH
Confidence            333346789999999999999999999999999999987 5666654432                  111         


Q ss_pred             -------------------hhhhCCCccee-EEEEEeCCeEEEEEe-CC---ChHHHHHHHHHH
Q 032502           91 -------------------FSTSWDIKATP-TFFFLKDGQQVDKLV-GA---NKPELQKKVAAA  130 (139)
Q Consensus        91 -------------------~~~~~~v~~~P-t~~~~~~g~~~~~~~-g~---~~~~l~~~i~~~  130 (139)
                                         ....||  ..| .++++++|+++..-. |.   ..+++.++|++.
T Consensus       175 ~l~~~~~~~pi~vD~mdN~~~~~Yg--A~PeRlyIi~~gkv~Y~Gg~GP~~y~~~e~r~~L~~~  236 (237)
T PF00837_consen  175 LLKEEFPQCPIVVDTMDNNFNKAYG--ALPERLYIIQDGKVVYKGGPGPFGYSPEELREWLEKY  236 (237)
T ss_pred             HHHhhCCCCCEEEEccCCHHHHHhC--CCcceEEEEECCEEEEeCCCCCCcCCHHHHHHHHHhc
Confidence                               112233  466 456669999887632 33   788888888764

97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process

>KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]

Probab=97.58  E-value=0.00049  Score=44.29  Aligned_cols=111  Identities=22%  Similarity=0.294  Sum_probs=80.0

Q ss_pred             CCCceEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCC--CcEEEEEeCCc--------chh-
Q 032502           22 AGGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP--SLMFLLVDVDE--------LVE-   90 (139)
Q Consensus        22 ~~~~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~--------~~~-   90 (139)
                      ...++.+++-.+.....+.+...++|++|+.--|+.|+.-......|..+.++|.  ++.++..-|.+        +.+ 
T Consensus        10 ~~~siydf~~~d~~G~~v~l~~yrGkV~LiVNVAS~Cg~T~~~Y~~l~~L~~ky~~~Gl~ILaFPCNQFg~QEp~~n~Ei   89 (171)
T KOG1651|consen   10 EKGSIYDFSAKDLDGEYVSLSQYRGKVVLIVNVASQCGLTESQYTELNELYEKYKDQGLEILAFPCNQFGNQEPGSNEEI   89 (171)
T ss_pred             hhcceeeeEEecCCCCCccHHHhCCeEEEEEEcccccccchhcchhHHHHHHHHhhCCeEEEEeccccccCcCCCCcHHH
Confidence            4456677776666667788888999999999999999999988889999999986  46666665532        222 


Q ss_pred             ---hhhhCCC-----------------------------------cceeEEEEEeCCeEEEEEeCC-ChHHHHHHHHHHh
Q 032502           91 ---FSTSWDI-----------------------------------KATPTFFFLKDGQQVDKLVGA-NKPELQKKVAAAV  131 (139)
Q Consensus        91 ---~~~~~~v-----------------------------------~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~i~~~~  131 (139)
                         ++.+|+.                                   +.+=-|++.++|+++.|+... ++-++..-|+++|
T Consensus        90 ~~f~~~r~~~~f~if~KidVNG~~~~PlykfLK~~~~~~lg~~IkWNF~KFLVd~~G~vv~Ry~ptt~p~~~~~dIe~lL  169 (171)
T KOG1651|consen   90 LNFVKVRYGAEFPIFQKIDVNGDNADPLYKFLKKVKGGPLGDDIKWNFTKFLVDKDGHVVKRFSPTTSPLDIEKDIEKLL  169 (171)
T ss_pred             HHHHHhccCCCCccEeEEecCCCCCchHHHHHhhcCCCcccccceeeeEEEeECCCCcEEEeeCCCCCccccchhHHHHh
Confidence               2233332                                   112246777999999999776 7777777788776


Q ss_pred             h
Q 032502          132 D  132 (139)
Q Consensus       132 ~  132 (139)
                      .
T Consensus       170 ~  170 (171)
T KOG1651|consen  170 A  170 (171)
T ss_pred             c
Confidence            4

>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=97.56  E-value=0.00057  Score=45.22  Aligned_cols=93  Identities=23%  Similarity=0.271  Sum_probs=67.6

Q ss_pred             HHHHhhCCCEEEEEEe-CCCChhhhhhhHhHHHHHHhCC--CcEEEEEeCCc----------------------------
Q 032502           39 MSEASKEGKIVIANFS-ATWCGPCRMIAPFFSELSEKYP--SLMFLLVDVDE----------------------------   87 (139)
Q Consensus        39 ~~~~~~~~k~vlv~f~-~~~C~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~----------------------------   87 (139)
                      +.+....+|.+++.|| +..-+.|-.....+.+.+.++.  ++.++.+.+|.                            
T Consensus        26 i~l~d~~gkw~VLff~P~DFTfVCpTEi~af~~~y~eF~~~g~eVigvS~Ds~fsH~aW~~~~~~~~gi~~i~~PmiaD~  105 (194)
T COG0450          26 ITLSDYYGKWVVLFFYPADFTFVCPTEIIAFAKRYEEFQKRGVEVIGVSTDSVFSHKAWKATIREAGGIGKIKFPMIADP  105 (194)
T ss_pred             EechhhcCcEEEEEeccCCCCccCcchHHHHHhhhHHHHHcCCEEEEEecCcHHHHHHHHhcHHhcCCccceecceEEcC
Confidence            3344444689999999 8888899988888888888875  68888888864                            


Q ss_pred             chhhhhhCCCccee-------EEEEEeCCeEEEEEe-----CCChHHHHHHHHHHh
Q 032502           88 LVEFSTSWDIKATP-------TFFFLKDGQQVDKLV-----GANKPELQKKVAAAV  131 (139)
Q Consensus        88 ~~~~~~~~~v~~~P-------t~~~~~~g~~~~~~~-----g~~~~~l~~~i~~~~  131 (139)
                      ..++++.||+-.-.       +|++.++|.+.....     |.+.+++.+.|+.+.
T Consensus       106 ~~~vs~~ygvl~~~~g~a~R~~FIIDp~g~ir~~~v~~~~iGRn~dEilR~idAlq  161 (194)
T COG0450         106 KGEIARAYGVLHPEEGLALRGTFIIDPDGVIRHILVNPLTIGRNVDEILRVIDALQ  161 (194)
T ss_pred             chhHHHHcCCcccCCCcceeEEEEECCCCeEEEEEEecCCCCcCHHHHHHHHHHHH
Confidence            34567778764321       577779998877654     447888888877764

>KOG0855 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]

Probab=97.37  E-value=0.00063  Score=43.94  Aligned_cols=68  Identities=22%  Similarity=0.111  Sum_probs=48.8

Q ss_pred             cccCCCceEEeechhHHHHHHHHHhh-CCCEEEEEEe-CCCChhhhhhhHhHHHHHHhCC--CcEEEEEeCC
Q 032502           19 VEFAGGNVSLVTTKDIWDQKMSEASK-EGKIVIANFS-ATWCGPCRMIAPFFSELSEKYP--SLMFLLVDVD   86 (139)
Q Consensus        19 ~~~~~~~~~~i~~~~~~~~~~~~~~~-~~k~vlv~f~-~~~C~~C~~~~~~l~~~~~~~~--~v~~~~vd~~   86 (139)
                      ..-.|..+|+++..++....+.+... .+++||++|| +..-|.|.++.--+++-++++.  +..++.+..|
T Consensus        62 ~v~~Gd~iPD~tL~dedg~sisLkkit~nk~vV~f~YP~asTPGCTkQaCgFRDnY~k~kka~aeV~GlS~D  133 (211)
T KOG0855|consen   62 KVNKGDAIPDFTLKDEDGKSISLKKITGNKPVVLFFYPAASTPGCTKQACGFRDNYEKFKKAGAEVIGLSGD  133 (211)
T ss_pred             eeecCCcCCCcccccCCCCeeeeeeecCCCcEEEEEeccCCCCCcccccccccccHHHHhhcCceEEeeccC
Confidence            34567788998888877777765443 4568999999 6677888888777777666664  4666677665

>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]

Probab=97.29  E-value=0.015  Score=35.80  Aligned_cols=97  Identities=18%  Similarity=0.274  Sum_probs=60.5

Q ss_pred             chhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHH----HhCCCcEEEEEeCC-----cchhhhhhCCC--cc
Q 032502           31 TKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELS----EKYPSLMFLLVDVD-----ELVEFSTSWDI--KA   99 (139)
Q Consensus        31 ~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~----~~~~~v~~~~vd~~-----~~~~~~~~~~v--~~   99 (139)
                      +.-+|++.+    .+.+.+||.|=...= + =.-+..+.+++    ...+++-+..|.+.     +|.+++++|++  ..
T Consensus        10 D~~tFdKvi----~kf~~~LVKFD~ayP-y-GeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i~ke~   83 (126)
T PF07912_consen   10 DELTFDKVI----PKFKYVLVKFDVAYP-Y-GEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKIDKED   83 (126)
T ss_dssp             STTHHHHHG----GGSSEEEEEEEESS----CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-SCCC
T ss_pred             cceehhhee----ccCceEEEEEeccCC-C-cchHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCCCccc
Confidence            456777777    456899999964321 1 12223444444    33446888888764     58899999999  57


Q ss_pred             eeEEEEEe-CCeEEEEE--eCC-ChHHHHHHHHHHhhc
Q 032502          100 TPTFFFLK-DGQQVDKL--VGA-NKPELQKKVAAAVDS  133 (139)
Q Consensus       100 ~Pt~~~~~-~g~~~~~~--~g~-~~~~l~~~i~~~~~~  133 (139)
                      +|.+++|. +...--.+  .+. +.+.|+.|+.+..+.
T Consensus        84 fPv~~LF~~~~~~pv~~p~~~~~t~~~l~~fvk~~t~~  121 (126)
T PF07912_consen   84 FPVIYLFVGDKEEPVRYPFDGDVTADNLQRFVKSNTGL  121 (126)
T ss_dssp             -SEEEEEESSTTSEEEE-TCS-S-HHHHHHHHHHTSS-
T ss_pred             CCEEEEecCCCCCCccCCccCCccHHHHHHHHHhCCCe
Confidence            89999995 44444444  454 899999999876443

The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.

>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]

Probab=97.26  E-value=0.002  Score=45.61  Aligned_cols=106  Identities=18%  Similarity=0.326  Sum_probs=74.0

Q ss_pred             ceEEeechhHHHHHHHHHhhCCCEEEEEEeC----CCChhhhhhhHhHHHHHHhCC---------CcEEEEEeCCcchhh
Q 032502           25 NVSLVTTKDIWDQKMSEASKEGKIVIANFSA----TWCGPCRMIAPFFSELSEKYP---------SLMFLLVDVDELVEF   91 (139)
Q Consensus        25 ~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~----~~C~~C~~~~~~l~~~~~~~~---------~v~~~~vd~~~~~~~   91 (139)
                      .+..+ +.+.+...+. ..-.+-.+++.|.|    ..|.-|+....++.-+++.+-         .+=|..||.++.++.
T Consensus        41 ~VI~~-n~d~~~~~v~-~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~p~~  118 (331)
T KOG2603|consen   41 GVIRM-NDDKFSKFVR-PPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDESPQV  118 (331)
T ss_pred             CeEEe-cCcchhhhcc-CCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccccHHH
Confidence            34443 4556666665 32445567777776    389999999999988887752         166889999999999


Q ss_pred             hhhCCCcceeEEEEE--eCCeEEE------EEeCCChHHHHHHHHHHhh
Q 032502           92 STSWDIKATPTFFFL--KDGQQVD------KLVGANKPELQKKVAAAVD  132 (139)
Q Consensus        92 ~~~~~v~~~Pt~~~~--~~g~~~~------~~~g~~~~~l~~~i~~~~~  132 (139)
                      .+.+++..+|++++|  ..|++..      ...|...+++.++++...+
T Consensus       119 Fq~l~ln~~P~l~~f~P~~~n~~~s~~~d~~~~g~~Ae~iaqfv~~~tk  167 (331)
T KOG2603|consen  119 FQQLNLNNVPHLVLFSPAKGNKKRSDQMDQQDLGFEAEQIAQFVADRTK  167 (331)
T ss_pred             HHHhcccCCCeEEEeCCCccccccCccchhhhcchhHHHHHHHHHHhhh
Confidence            999999999999999  3333331      1123356777777766543

>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems

Probab=97.23  E-value=0.00065  Score=44.62  Aligned_cols=60  Identities=23%  Similarity=0.349  Sum_probs=41.6

Q ss_pred             EEeechhHHHHHHHHHhhCCCEEEEEEeCCCCh-hhhhhhHhHHHHHHhCC----CcEEEEEeCC
Q 032502           27 SLVTTKDIWDQKMSEASKEGKIVIANFSATWCG-PCRMIAPFFSELSEKYP----SLMFLLVDVD   86 (139)
Q Consensus        27 ~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~-~C~~~~~~l~~~~~~~~----~v~~~~vd~~   86 (139)
                      +++...++..+.+.....++|++||+|.-..|+ .|..+...|.++.++++    ++.++.|.+|
T Consensus        33 ~~f~L~d~~G~~~~~~~~~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvD   97 (174)
T PF02630_consen   33 PDFTLTDQDGKTVTLDDLKGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVD   97 (174)
T ss_dssp             ST-EEEETTSSEEEGGGGTTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESS
T ss_pred             CCcEEEcCCCCEecHHHhCCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeC
Confidence            334444444555666667899999999999997 89988887877766543    4777777665

In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....

>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs

Probab=97.22  E-value=0.0013  Score=41.95  Aligned_cols=50  Identities=16%  Similarity=0.236  Sum_probs=37.1

Q ss_pred             CChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchh----hhhhCCC----cceeEEEEEeCCeEEE
Q 032502           57 WCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVE----FSTSWDI----KATPTFFFLKDGQQVD  113 (139)
Q Consensus        57 ~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~----~~~~~~v----~~~Pt~~~~~~g~~~~  113 (139)
                      +|++|..+...|+.+     +|.|..+|++.+.+    +.+.++-    ..+|.+++  +|+.+.
T Consensus        15 t~~~C~~ak~iL~~~-----~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI--~G~~IG   72 (147)
T cd03031          15 TFEDCNNVRAILESF-----RVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFV--DGRYLG   72 (147)
T ss_pred             cChhHHHHHHHHHHC-----CCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEE--CCEEEe
Confidence            899999999988765     67888888876654    3344454    67898887  776554

This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.

>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C

Probab=97.10  E-value=0.0023  Score=42.12  Aligned_cols=26  Identities=27%  Similarity=0.502  Sum_probs=21.7

Q ss_pred             EEeCCCChhhhhhhHhHHHHHHhCCC
Q 032502           52 NFSATWCGPCRMIAPFFSELSEKYPS   77 (139)
Q Consensus        52 ~f~~~~C~~C~~~~~~l~~~~~~~~~   77 (139)
                      +|..|.|++|-...|.+.++...+++
T Consensus         2 ~F~dPlc~~C~~~E~~l~kl~~~~~~   27 (176)
T PF13743_consen    2 LFVDPLCSWCWGFEPELRKLKEEYGN   27 (176)
T ss_dssp             EEE-TT-HHHHHHHHHHHHHHHHS-T
T ss_pred             eeeCCCChHHHHhHHHHHHHHHHcCC
Confidence            68899999999999999999999985

>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA

Probab=96.92  E-value=0.006  Score=34.03  Aligned_cols=58  Identities=17%  Similarity=0.148  Sum_probs=49.3

Q ss_pred             EEEEEeCCCChhhhhhhHhHHHHHHhCC--CcEEEEEeCCcchhhhhhCCCcceeEEEEE
Q 032502           49 VIANFSATWCGPCRMIAPFFSELSEKYP--SLMFLLVDVDELVEFSTSWDIKATPTFFFL  106 (139)
Q Consensus        49 vlv~f~~~~C~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~  106 (139)
                      .+..|-+...+.+......+.++.+.+.  .+.+-.+|..+++++++.++|-.+||++-.
T Consensus         3 ~L~Lyv~g~tp~S~~ai~nl~~i~e~~l~~~~~LeVIDv~~~P~lAe~~~ivAtPtLvk~   62 (72)
T cd02978           3 VLRLYVAGRTPKSERALQNLKRILEELLGGPYELEVIDVLKQPQLAEEDKIVATPTLVKV   62 (72)
T ss_pred             EEEEEECCCCchHHHHHHHHHHHHHHhcCCcEEEEEEEcccCHhHHhhCCEEEechhhhc
Confidence            4566667777999999999999888874  388889999999999999999999997754

KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor

>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins

Probab=96.84  E-value=0.019  Score=32.26  Aligned_cols=69  Identities=16%  Similarity=0.160  Sum_probs=42.5

Q ss_pred             EEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcc----hhhhhhCCCcceeEEEEEeCCeEEEEEeCCChHHHHHH
Q 032502           51 ANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDEL----VEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKK  126 (139)
Q Consensus        51 v~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~----~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~l~~~  126 (139)
                      ..++.++|++|++.+-.|.+.     ++.|-.++++..    +++.+.-+...+|+++...+|..+.     ....|.++
T Consensus         3 ~Ly~~~~sp~~~kv~~~L~~~-----gi~y~~~~v~~~~~~~~~~~~~~p~~~vP~l~~~~~~~~l~-----es~~I~~y   72 (77)
T cd03041           3 ELYEFEGSPFCRLVREVLTEL-----ELDVILYPCPKGSPKRDKFLEKGGKVQVPYLVDPNTGVQMF-----ESADIVKY   72 (77)
T ss_pred             eEecCCCCchHHHHHHHHHHc-----CCcEEEEECCCChHHHHHHHHhCCCCcccEEEeCCCCeEEE-----cHHHHHHH
Confidence            456788999999998887666     444444555432    2343444567899885433343222     55667776


Q ss_pred             HHH
Q 032502          127 VAA  129 (139)
Q Consensus       127 i~~  129 (139)
                      |++
T Consensus        73 L~~   75 (77)
T cd03041          73 LFK   75 (77)
T ss_pred             HHH
Confidence            654

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=96.81  E-value=0.033  Score=42.76  Aligned_cols=82  Identities=13%  Similarity=0.110  Sum_probs=59.4

Q ss_pred             CEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhhhhhCCCcceeEEEEEeCCeEE-EEEeCC-ChHHHH
Q 032502           47 KIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQV-DKLVGA-NKPELQ  124 (139)
Q Consensus        47 k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~-~~~~g~-~~~~l~  124 (139)
                      ++|-+.++...|..|..+...+++++...+.+.+...+.+           ...|++.+..+|+-. -++.|. ...+|.
T Consensus        19 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~s~~i~~~~~~~~-----------~~~p~~~~~~~~~~~~i~f~g~P~g~Ef~   87 (517)
T PRK15317         19 RPIELVASLDDSEKSAELKELLEEIASLSDKITVEEDSLD-----------VRKPSFSITRPGEDTGVRFAGIPMGHEFT   87 (517)
T ss_pred             CCEEEEEEeCCCchHHHHHHHHHHHHHhCCceEEEEccCC-----------CCCCEEEEEcCCccceEEEEecCccHHHH
Confidence            4444555555899999999999999988877766443321           237999888765432 466788 889999


Q ss_pred             HHHHHHhhccCCCCC
Q 032502          125 KKVAAAVDSVVPSQK  139 (139)
Q Consensus       125 ~~i~~~~~~~~~~~k  139 (139)
                      .+|..++....+.++
T Consensus        88 s~i~~i~~~~~~~~~  102 (517)
T PRK15317         88 SLVLALLQVGGHPPK  102 (517)
T ss_pred             HHHHHHHHhcCCCCC
Confidence            999999887666543

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=96.80  E-value=0.036  Score=42.55  Aligned_cols=84  Identities=15%  Similarity=0.194  Sum_probs=61.1

Q ss_pred             CCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhhhhhCCCcceeEEEEEeCCe-EEEEEeCC-ChHH
Q 032502           45 EGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQ-QVDKLVGA-NKPE  122 (139)
Q Consensus        45 ~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~-~~~~~~g~-~~~~  122 (139)
                      ++.+.++.|.. .|..|..+...+++++...+.+.+...+.+.          ...|++.+..+|+ .--+|.|. ...+
T Consensus        18 ~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~s~ki~~~~~~~~~----------~~~p~~~~~~~~~~~~i~f~g~P~g~E   86 (515)
T TIGR03140        18 ENPVTLVLSAG-SHEKSKELLELLDEIASLSDKISLTQNTADT----------LRKPSFTILRDGADTGIRFAGIPGGHE   86 (515)
T ss_pred             CCCEEEEEEeC-CCchhHHHHHHHHHHHHhCCCeEEEEecCCc----------CCCCeEEEecCCcccceEEEecCCcHH
Confidence            34444444444 7999999999999999888777765544332          2459998887765 33567788 8899


Q ss_pred             HHHHHHHHhhccCCCCC
Q 032502          123 LQKKVAAAVDSVVPSQK  139 (139)
Q Consensus       123 l~~~i~~~~~~~~~~~k  139 (139)
                      |..+|..++....+.++
T Consensus        87 f~s~i~~i~~~~~~~~~  103 (515)
T TIGR03140        87 FTSLVLAILQVGGHGPK  103 (515)
T ss_pred             HHHHHHHHHHhcCCCCC
Confidence            99999999887766553

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides

Probab=96.77  E-value=0.043  Score=32.34  Aligned_cols=75  Identities=15%  Similarity=0.146  Sum_probs=53.3

Q ss_pred             hCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhhhhhCCCcceeEEEEEeCCeE-EEEEeCC-ChH
Q 032502           44 KEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQ-VDKLVGA-NKP  121 (139)
Q Consensus        44 ~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~-~~~~~g~-~~~  121 (139)
                      .++.+.++.|.... ..|..+...+++++...+.+.+...+.++           ..|++.+..+|+. --++.|. ...
T Consensus        17 l~~pV~l~~f~~~~-~~~~e~~~ll~e~a~lSdkI~~~~~~~~~-----------~~P~~~i~~~~~~~gIrF~GiP~Gh   84 (94)
T cd02974          17 LENPVELVASLDDS-EKSAELLELLEEIASLSDKITLEEDNDDE-----------RKPSFSINRPGEDTGIRFAGIPMGH   84 (94)
T ss_pred             CCCCEEEEEEeCCC-cchHHHHHHHHHHHHhCCceEEEEecCCC-----------CCCEEEEecCCCcccEEEEecCCch
Confidence            44556666666655 99999999999999887767665544322           3699999866532 2466788 788


Q ss_pred             HHHHHHHHH
Q 032502          122 ELQKKVAAA  130 (139)
Q Consensus       122 ~l~~~i~~~  130 (139)
                      ++..+|..+
T Consensus        85 Ef~Slilai   93 (94)
T cd02974          85 EFTSLVLAL   93 (94)
T ss_pred             hHHHHHHHh
Confidence            888888765

AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-

>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2

Probab=96.63  E-value=0.044  Score=30.56  Aligned_cols=71  Identities=18%  Similarity=0.278  Sum_probs=43.9

Q ss_pred             EEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCC--cchhhhhhCCCcceeEEEEEe--CCeEEEEEeCCChHHHHH
Q 032502           50 IANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVD--ELVEFSTSWDIKATPTFFFLK--DGQQVDKLVGANKPELQK  125 (139)
Q Consensus        50 lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~--~~~~~~~~~~v~~~Pt~~~~~--~g~~~~~~~g~~~~~l~~  125 (139)
                      +..|+.+.|++|++.+-.|...     ++.+-.++.+  ...++ +.-+...+|++..-.  +|+.+.     ....+.+
T Consensus         2 i~Ly~~~~~p~c~kv~~~L~~~-----gi~y~~~~~~~~~~~~~-~~~~~~~vP~l~~~~~~~~~~l~-----eS~~I~~   70 (77)
T cd03040           2 ITLYQYKTCPFCCKVRAFLDYH-----GIPYEVVEVNPVSRKEI-KWSSYKKVPILRVESGGDGQQLV-----DSSVIIS   70 (77)
T ss_pred             EEEEEcCCCHHHHHHHHHHHHC-----CCceEEEECCchhHHHH-HHhCCCccCEEEECCCCCccEEE-----cHHHHHH
Confidence            3457789999999999777655     4444444443  22233 334567899987652  243322     5567777


Q ss_pred             HHHHHh
Q 032502          126 KVAAAV  131 (139)
Q Consensus       126 ~i~~~~  131 (139)
                      +|++.+
T Consensus        71 yL~~~~   76 (77)
T cd03040          71 TLKTYL   76 (77)
T ss_pred             HHHHHc
Confidence            777654

Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.

>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=96.59  E-value=0.055  Score=36.96  Aligned_cols=43  Identities=23%  Similarity=0.414  Sum_probs=34.1

Q ss_pred             hhhCCCcceeEEEEEeCCeEEEEEeCC-ChHHHHHHHHHHhhccCCCC
Q 032502           92 STSWDIKATPTFFFLKDGQQVDKLVGA-NKPELQKKVAAAVDSVVPSQ  138 (139)
Q Consensus        92 ~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~i~~~~~~~~~~~  138 (139)
                      +.++||+++|+|++  +|+.  ...|. +.+.+.+.|.++++.....+
T Consensus       177 A~e~gI~gVP~fv~--d~~~--~V~Gaq~~~v~~~al~~~~~~~~~~~  220 (225)
T COG2761         177 AQEMGIRGVPTFVF--DGKY--AVSGAQPYDVLEDALRQLLAEKAEEH  220 (225)
T ss_pred             HHHCCCccCceEEE--cCcE--eecCCCCHHHHHHHHHHHHhcccccC
Confidence            55789999999999  5443  44588 99999999999998866543

>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related)

Probab=96.52  E-value=0.052  Score=32.30  Aligned_cols=96  Identities=8%  Similarity=0.150  Sum_probs=63.7

Q ss_pred             EeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCC-cEEEEEeCCc--chhhhhhCCCc----ce
Q 032502           28 LVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVDE--LVEFSTSWDIK----AT  100 (139)
Q Consensus        28 ~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~-v~~~~vd~~~--~~~~~~~~~v~----~~  100 (139)
                      .|.+-.+|...+    .....|++.|..+. ..-...+..+.++++...+ -.++.|||..  ...+|+++.+.    --
T Consensus         5 ~i~d~KdfKKLL----RTr~NVLvLy~ks~-k~a~~~Lk~~~~~A~~vkG~gT~~~vdCgd~e~kKLCKKlKv~~~~kp~   79 (112)
T cd03067           5 DISDHKDFKKLL----RTRNNVLVLYSKSA-KSAEALLKLLSDVAQAVKGQGTIAWIDCGDSESRKLCKKLKVDPSSKPK   79 (112)
T ss_pred             cccchHHHHHHH----hhcCcEEEEEecch-hhHHHHHHHHHHHHHHhcCceeEEEEecCChHHHHHHHHHccCCCCCCC
Confidence            455666776666    33456666665543 3334455678888888775 6677888876  77899999987    44


Q ss_pred             eE-EEEEeCCeEEEEEeCC-ChHHHHHHHH
Q 032502          101 PT-FFFLKDGQQVDKLVGA-NKPELQKKVA  128 (139)
Q Consensus       101 Pt-~~~~~~g~~~~~~~g~-~~~~l~~~i~  128 (139)
                      |. +.-|++|.....+... +...+..|+.
T Consensus        80 ~~~LkHYKdG~fHkdYdR~~t~kSmv~Flr  109 (112)
T cd03067          80 PVELKHYKDGDFHTEYNRQLTFKSMVAFLR  109 (112)
T ss_pred             cchhhcccCCCccccccchhhHHHHHHHhh
Confidence            53 4555999887766555 6666666553

PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.

>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]

Probab=96.48  E-value=0.0095  Score=41.24  Aligned_cols=99  Identities=20%  Similarity=0.325  Sum_probs=66.6

Q ss_pred             HHHHHHHhhCCCEEEEEEeCCCCh-hhhhhhHhHHHHHHhCC---Cc----EEEEEeCCcc-------------------
Q 032502           36 DQKMSEASKEGKIVIANFSATWCG-PCRMIAPFFSELSEKYP---SL----MFLLVDVDEL-------------------   88 (139)
Q Consensus        36 ~~~~~~~~~~~k~vlv~f~~~~C~-~C~~~~~~l~~~~~~~~---~v----~~~~vd~~~~-------------------   88 (139)
                      .+.+......+|.+|+||.-+.|| -|-..+..|..+.+...   ++    .|+.+|...+                   
T Consensus       129 Gk~~te~df~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPeRD~~~~~~eY~~eF~pkllGL  208 (280)
T KOG2792|consen  129 GKRVTEKDFLGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPERDSVEVVAEYVSEFHPKLLGL  208 (280)
T ss_pred             CCeecccccccceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCcccCCHHHHHHHHHhcChhhhcc
Confidence            344555667799999999999999 79888887777666542   32    4777777422                   


Q ss_pred             -------hhhhhhCCCcce--e-----------E---EEEEeCCeEEEEEeCC-ChHHHHHHHHHHhhcc
Q 032502           89 -------VEFSTSWDIKAT--P-----------T---FFFLKDGQQVDKLVGA-NKPELQKKVAAAVDSV  134 (139)
Q Consensus        89 -------~~~~~~~~v~~~--P-----------t---~~~~~~g~~~~~~~g~-~~~~l~~~i~~~~~~~  134 (139)
                             ...++.|.|..-  |           +   +++..+|+.+..+.-. +.+++.+.|.+.+...
T Consensus       209 TGT~eqvk~vak~yRVYfs~gp~d~~~DYlVDHSi~mYLidPeg~Fvd~~GrN~~~~~~~~~I~~~v~~y  278 (280)
T KOG2792|consen  209 TGTTEQVKQVAKKYRVYFSTGPKDEDQDYLVDHSIFMYLIDPEGEFVDYYGRNYDADELADSILKHVASY  278 (280)
T ss_pred             cCCHHHHHHHHHHhEEeeccCCCCCCCCeeeeeeEEEEEECCCcceehhhcccCCHHHHHHHHHHHHHhc
Confidence                   234566655321  2           2   2333789888877444 8999998888876654

>cd02990 UAS_FAF1 UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain

Probab=96.43  E-value=0.11  Score=32.79  Aligned_cols=97  Identities=10%  Similarity=0.169  Sum_probs=67.6

Q ss_pred             HHHHHHHHH----hhCCCEEEEEEeCCCCh----hhhhhh--HhHHHHHHhCCCcEEEEEeCCcch--------------
Q 032502           34 IWDQKMSEA----SKEGKIVIANFSATWCG----PCRMIA--PFFSELSEKYPSLMFLLVDVDELV--------------   89 (139)
Q Consensus        34 ~~~~~~~~~----~~~~k~vlv~f~~~~C~----~C~~~~--~~l~~~~~~~~~v~~~~vd~~~~~--------------   89 (139)
                      .+.+.+..+    ..+.|+.+||.+++...    .|+...  +.+-+..+.  ++.+..-|+....              
T Consensus         5 s~~~Al~~A~~~~~~e~K~L~VYLH~~~~~~t~~Fc~~~L~se~Vi~fl~~--nfv~Wg~dvt~~~~~~~fl~~~~~~~g   82 (136)
T cd02990           5 SLEAAFQEACYRKARDRKLLAIYLHHDESVLSNVFCSQLLCAESIVQYLSQ--NFITWGWDMTKESNKARFLSSCTRHFG   82 (136)
T ss_pred             cHHHHHHHHhhhhhhhcceEEEEEcCCCCccHHHHHHHHhcCHHHHHHHHc--CEEEEeeeccchhhhhHHHHhhhhhhh
Confidence            345556655    67789999999998774    666543  344444442  5777777876532              


Q ss_pred             ----hhhhhCCCcceeEEEEE-eCC---eEEEEEeCC-ChHHHHHHHHHHhh
Q 032502           90 ----EFSTSWDIKATPTFFFL-KDG---QQVDKLVGA-NKPELQKKVAAAVD  132 (139)
Q Consensus        90 ----~~~~~~~v~~~Pt~~~~-~~g---~~~~~~~g~-~~~~l~~~i~~~~~  132 (139)
                          ...+.++...+|.+.++ +..   .++.+..|. +++++...|.+.+.
T Consensus        83 ~~a~~~~~~~~~~~fP~~avI~~~~~~~~vl~~i~G~~~~~ell~~L~~~ve  134 (136)
T cd02990          83 SVAAQTIRNIKTDQLPAILIIMGKRSSNEVLNVIQGNTGVDELLMRLIEAME  134 (136)
T ss_pred             HHHHHHHHhcCcCCCCeEEEEEecCCceEEEEEEECCCCHHHHHHHHHHHHh
Confidence                13455778999998888 332   577888899 99999998887764

FAF1 also contains ubiquitin-associated UBA and nuclear targeting domains, N-terminal to the UAS domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. It is widely expressed in adult and embryonic tissues, and in tumor cell lines, and is localized not only in the cytoplasm where it interacts with Fas, but also in the nucleus. FAF1 contains phosphorylation sites for protein kinase CK2 within the nuclear targeting domain. Phosphorylation influences nuclear localization of FAF1 but does not affect its potentiation of Fas-induced apoptosis. Other functions have also been attributed to FAF1. It inhibits nuclear factor-kB (NF-kB) by interfering with the nuclear

>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle

Probab=96.38  E-value=0.09  Score=31.24  Aligned_cols=94  Identities=14%  Similarity=0.139  Sum_probs=58.6

Q ss_pred             eEEeechhHHHHHHHHHhh-CCCEEEEEEeCCCChhhhhhhHhHHHHHHhC-CCcEEEEEeCCcchhhhhhCCCcceeEE
Q 032502           26 VSLVTTKDIWDQKMSEASK-EGKIVIANFSATWCGPCRMIAPFFSELSEKY-PSLMFLLVDVDELVEFSTSWDIKATPTF  103 (139)
Q Consensus        26 ~~~i~~~~~~~~~~~~~~~-~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~-~~v~~~~vd~~~~~~~~~~~~v~~~Pt~  103 (139)
                      +..+.+.++.+..+    . ++.+++|-|+..--+   .....+.++++.+ .++.|....   +..+...+++. .|.+
T Consensus         2 v~~i~~~~~~e~~~----~~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d~~F~~~~---~~~~~~~~~~~-~~~i   70 (102)
T cd03066           2 VEIINSERELQAFE----NIEDDIKLIGYFKSEDS---EHYKAFEEAAEEFHPYIKFFATF---DSKVAKKLGLK-MNEV   70 (102)
T ss_pred             ceEcCCHHHHHHHh----cccCCeEEEEEECCCCC---HHHHHHHHHHHhhhcCCEEEEEC---cHHHHHHcCCC-CCcE
Confidence            34555666665555    3 466777777765333   3556677788887 457775433   34556777775 5888


Q ss_pred             EEEeC-CeEEEEE-eCC-ChHHHHHHHHHH
Q 032502          104 FFLKD-GQQVDKL-VGA-NKPELQKKVAAA  130 (139)
Q Consensus       104 ~~~~~-g~~~~~~-~g~-~~~~l~~~i~~~  130 (139)
                      +++++ ......+ .|. +.+.|.+||...
T Consensus        71 ~l~~~~~e~~~~y~~g~~~~~~l~~fi~~~  100 (102)
T cd03066          71 DFYEPFMEEPVTIPDKPYSEEELVDFVEEH  100 (102)
T ss_pred             EEeCCCCCCCcccCCCCCCHHHHHHHHHHh
Confidence            88844 2222335 455 888999998753

It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca

>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.38  E-value=0.017  Score=32.27  Aligned_cols=56  Identities=20%  Similarity=0.354  Sum_probs=38.1

Q ss_pred             EEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcc--------------h--hhhhhCCCcceeEEEEEeCCeEE
Q 032502           51 ANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDEL--------------V--EFSTSWDIKATPTFFFLKDGQQV  112 (139)
Q Consensus        51 v~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~--------------~--~~~~~~~v~~~Pt~~~~~~g~~~  112 (139)
                      +.|++.-||.|..+...++++     ++.+-.|++.+.              +  +-++..|--++|.+++. +|+++
T Consensus         5 ~lfgsn~Cpdca~a~eyl~rl-----~v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~~-d~~vV   76 (85)
T COG4545           5 KLFGSNLCPDCAPAVEYLERL-----NVDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLTD-DGKVV   76 (85)
T ss_pred             eeeccccCcchHHHHHHHHHc-----CCCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEeC-CCcEE
Confidence            569999999999999888877     444445555332              1  12455677799998874 44443

>PRK09301 circadian clock protein KaiB; Provisional

Probab=96.35  E-value=0.016  Score=34.59  Aligned_cols=80  Identities=15%  Similarity=0.135  Sum_probs=61.6

Q ss_pred             CCCEEEEEEeCCCChhhhhhhHhHHHHHHhCC-C-cEEEEEeCCcchhhhhhCCCcceeEEEEEeCCeEEEEEeCC--Ch
Q 032502           45 EGKIVIANFSATWCGPCRMIAPFFSELSEKYP-S-LMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGA--NK  120 (139)
Q Consensus        45 ~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~-~-v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~--~~  120 (139)
                      ++..++=.|.+...+..+.....+.++.+.+- + +.+-.||+.+++++++.++|-.+||++-.- -.+..++.|-  +.
T Consensus         4 ~~~~~LrLyVag~tp~S~~ai~nL~~icE~~l~g~y~LeVIDv~~qPelAE~~~IvATPTLIK~~-P~P~rriiGDlsd~   82 (103)
T PRK09301          4 RKTYILKLYVAGNTPNSVRALKTLKNILETEFKGVYALKVIDVLKNPQLAEEDKILATPTLAKIL-PPPVRKIIGDLSDR   82 (103)
T ss_pred             CceEEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHhHHhHCCeEEecHHhhcC-CCCcceeecccccH
Confidence            34677777889999999999999999877653 3 888899999999999999999999976653 3445566665  44


Q ss_pred             HHHHH
Q 032502          121 PELQK  125 (139)
Q Consensus       121 ~~l~~  125 (139)
                      +.+..
T Consensus        83 ~kVL~   87 (103)
T PRK09301         83 EKVLI   87 (103)
T ss_pred             HHHHH
Confidence            54443

>TIGR02654 circ_KaiB circadian clock protein KaiB

Probab=96.35  E-value=0.018  Score=33.31  Aligned_cols=71  Identities=18%  Similarity=0.137  Sum_probs=55.9

Q ss_pred             CEEEEEEeCCCChhhhhhhHhHHHHHHhCC-C-cEEEEEeCCcchhhhhhCCCcceeEEEEEeCCeEEEEEeCC
Q 032502           47 KIVIANFSATWCGPCRMIAPFFSELSEKYP-S-LMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGA  118 (139)
Q Consensus        47 k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~-~-v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~  118 (139)
                      ..++=.|.+...+.++.....+.++.+.+- + +.+-.+|..+++++++.+++-.+||++-.- -.+..+..|-
T Consensus         3 ~~~LrLyvag~~p~S~~ai~nl~~i~e~~l~g~y~LeVIDv~~qP~lAE~~~IvATPtLIK~~-P~P~rriiGd   75 (87)
T TIGR02654         3 TYVLKLYVAGNTPNSVRALKTLKNILETEFQGVYALKVIDVLKNPQLAEEDKILATPTLSKIL-PPPVRKIIGD   75 (87)
T ss_pred             eEEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHhHHhHCCEEEecHHhhcC-CCCcceeecc
Confidence            456667778889999999999999877653 3 888899999999999999999999977652 2344555565

Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.

>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria

Probab=96.23  E-value=0.16  Score=34.24  Aligned_cols=80  Identities=21%  Similarity=0.469  Sum_probs=53.9

Q ss_pred             EEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCc------------------chhhhhhCCCc--ceeEEEEEeCC
Q 032502           50 IANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDE------------------LVEFSTSWDIK--ATPTFFFLKDG  109 (139)
Q Consensus        50 lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~------------------~~~~~~~~~v~--~~Pt~~~~~~g  109 (139)
                      |=+|.+..|+.|-.....|.++... ++|..+....|-                  ....+..++..  .+|.+++  ||
T Consensus         2 VELFTSQGCsSCPpAD~~L~~l~~~-~~Vi~LafHVDYWDylGWkD~fa~~~~t~RQr~Y~~~~~~~~vYTPQ~vV--nG   78 (202)
T PF06764_consen    2 VELFTSQGCSSCPPADRLLSELAAR-PDVIALAFHVDYWDYLGWKDPFASPEFTQRQRAYARRFGLRSVYTPQVVV--NG   78 (202)
T ss_dssp             EEEEE-TT-TT-HHHHHHHHHHHHH-TSSEEEEEE-STT-SSSS--TT--HHHHHHHHHHHHHTT-S---SSEEEE--TT
T ss_pred             eeEecCCCCCCCcHHHHHHHHhhcC-CCEEEEEecCCcccCCCCCCccCChhHHHHHHHHHHHhCCCCCcCCeEEE--CC
Confidence            3468899999999999999999988 477776666652                  12234455543  5888888  88


Q ss_pred             eEEEEEeCCChHHHHHHHHHHhhcc
Q 032502          110 QQVDKLVGANKPELQKKVAAAVDSV  134 (139)
Q Consensus       110 ~~~~~~~g~~~~~l~~~i~~~~~~~  134 (139)
                      +...  .|.+...+...|.+.....
T Consensus        79 ~~~~--~g~~~~~~~~ai~~~~~~~  101 (202)
T PF06764_consen   79 REHR--VGSDRAAVEAAIQAARARP  101 (202)
T ss_dssp             TEEE--ETT-HHHHHHHHHHHHHTT
T ss_pred             eeee--eccCHHHHHHHHHHhhccC
Confidence            8654  4778899999999887663

The function of this family is unknown.; PDB: 2AXO_A.

>COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=96.22  E-value=0.05  Score=34.72  Aligned_cols=67  Identities=18%  Similarity=0.094  Sum_probs=48.4

Q ss_pred             ccCCCceEEeechhHHHHHHHHHhhCCCEEEEEEe-CCCChhhhhhhHhHHHHHHhCCCcEEEEEeCC
Q 032502           20 EFAGGNVSLVTTKDIWDQKMSEASKEGKIVIANFS-ATWCGPCRMIAPFFSELSEKYPSLMFLLVDVD   86 (139)
Q Consensus        20 ~~~~~~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~-~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~   86 (139)
                      ...|..+|++.....--..+.+....+|..++..+ +-+-+.|......+++.+.++.++.++.|..|
T Consensus        18 ~~vGd~ap~ftl~~~dL~~v~l~~~~gk~~vi~v~PSiDT~VC~~qvr~Fn~~aa~~~~~~Vl~IS~D   85 (158)
T COG2077          18 PQVGDKAPDFTLVGKDLNDVSLADFAGKKKVISVFPSIDTPVCATQVRKFNEEAAKLGNTVVLCISMD   85 (158)
T ss_pred             CccCCcCCceEEEcCcccceeccccCCceEEEEEccCCCCchhhHHHHHHHHHHhccCCcEEEEEeCC
Confidence            45566677666444434445555566776666655 88999999999999999999988777777775

>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]

Probab=96.21  E-value=0.11  Score=38.66  Aligned_cols=95  Identities=14%  Similarity=0.222  Sum_probs=61.3

Q ss_pred             HHHHHHhhCCCEEEEEEeCCCChhhhhhhH-hH-HHHHHhCC--CcEEEEEeCC--cchhhhhhCCCcceeEEEEE-eCC
Q 032502           37 QKMSEASKEGKIVIANFSATWCGPCRMIAP-FF-SELSEKYP--SLMFLLVDVD--ELVEFSTSWDIKATPTFFFL-KDG  109 (139)
Q Consensus        37 ~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~-~l-~~~~~~~~--~v~~~~vd~~--~~~~~~~~~~v~~~Pt~~~~-~~g  109 (139)
                      ..+..+ +.++.++|.|-+-.......+.. .+ .......-  .+..+.|+..  ....+..-|.+..+|.++++ ..|
T Consensus        10 eAIa~a-K~kkalfVVyI~gddE~s~kl~r~~w~d~~vs~~ls~~fVaIkiqags~aa~qFs~IYp~v~vPs~ffIg~sG   88 (506)
T KOG2507|consen   10 EAIAEA-KGKKALFVVYISGDDEESDKLNRLTWTDASVSDSLSKYFVAIKIQAGSVAATQFSAIYPYVSVPSIFFIGFSG   88 (506)
T ss_pred             HHHHHh-hcCCeEEEEEEecCchHhhHHhhccchhhhhhhhhhcceEEEEeccCchhhhhhhhhcccccccceeeecCCC
Confidence            345444 44556666666666666666552 22 22211111  2444444443  34567778889999999888 899


Q ss_pred             eEEEEEeCC-ChHHHHHHHHHHhh
Q 032502          110 QQVDKLVGA-NKPELQKKVAAAVD  132 (139)
Q Consensus       110 ~~~~~~~g~-~~~~l~~~i~~~~~  132 (139)
                      .++....|. +.++|...|++...
T Consensus        89 tpLevitg~v~adeL~~~i~Kv~~  112 (506)
T KOG2507|consen   89 TPLEVITGFVTADELASSIEKVWL  112 (506)
T ss_pred             ceeEEeeccccHHHHHHHHHHHHH
Confidence            999999999 88999888887654

>COG3019 Predicted metal-binding protein [General function prediction only]

Probab=95.99  E-value=0.13  Score=32.46  Aligned_cols=72  Identities=17%  Similarity=0.324  Sum_probs=52.9

Q ss_pred             EEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhhhhhCCCc----ceeEEEEEeCCeEEEEEeCC-ChHH
Q 032502           48 IVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIK----ATPTFFFLKDGQQVDKLVGA-NKPE  122 (139)
Q Consensus        48 ~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~----~~Pt~~~~~~g~~~~~~~g~-~~~~  122 (139)
                      .-++.+++|.|+=|......++..     ++.+-.+..++-..+.++|||.    +-=|.++  +|..+.   |- ..+.
T Consensus        26 ~~~~vyksPnCGCC~~w~~~mk~~-----Gf~Vk~~~~~d~~alK~~~gIp~e~~SCHT~VI--~Gy~vE---GHVPa~a   95 (149)
T COG3019          26 TEMVVYKSPNCGCCDEWAQHMKAN-----GFEVKVVETDDFLALKRRLGIPYEMQSCHTAVI--NGYYVE---GHVPAEA   95 (149)
T ss_pred             eeEEEEeCCCCccHHHHHHHHHhC-----CcEEEEeecCcHHHHHHhcCCChhhccccEEEE--cCEEEe---ccCCHHH
Confidence            447778899999999999888632     7777788888888888888873    3336666  776544   55 6777


Q ss_pred             HHHHHHH
Q 032502          123 LQKKVAA  129 (139)
Q Consensus       123 l~~~i~~  129 (139)
                      +.+++.+
T Consensus        96 I~~ll~~  102 (149)
T COG3019          96 IARLLAE  102 (149)
T ss_pred             HHHHHhC
Confidence            7777655

>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E

Probab=95.98  E-value=0.062  Score=29.46  Aligned_cols=67  Identities=10%  Similarity=0.083  Sum_probs=37.7

Q ss_pred             EEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhhhhhCCCcceeEEEEEeCCeEEEEEeCCChHHHHHHH
Q 032502           52 NFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKV  127 (139)
Q Consensus        52 ~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~l~~~i  127 (139)
                      .++.++|++|++.+-.+....-   .+..+.++........+..+-..+|++.. .+|..+.     ....|.++|
T Consensus         3 Ly~~~~~p~~~rvr~~L~~~gl---~~~~~~~~~~~~~~~~~~~~~~~vP~L~~-~~~~~l~-----es~aI~~yL   69 (71)
T cd03037           3 LYIYEHCPFCVKARMIAGLKNI---PVEQIILQNDDEATPIRMIGAKQVPILEK-DDGSFMA-----ESLDIVAFI   69 (71)
T ss_pred             eEecCCCcHhHHHHHHHHHcCC---CeEEEECCCCchHHHHHhcCCCccCEEEe-CCCeEee-----hHHHHHHHH
Confidence            4678899999999887765521   23334444443333334445567898754 3354322     344555544

coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.

>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs

Probab=95.97  E-value=0.055  Score=29.72  Aligned_cols=57  Identities=11%  Similarity=0.074  Sum_probs=37.7

Q ss_pred             EEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCc-chhhhhhCCCcceeEEEEEeCCeE
Q 032502           51 ANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDE-LVEFSTSWDIKATPTFFFLKDGQQ  111 (139)
Q Consensus        51 v~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~-~~~~~~~~~v~~~Pt~~~~~~g~~  111 (139)
                      ..|+.++|++|++.+-.+.+..-   .+.++.++... .+++.+......+|++.. .+|..
T Consensus         2 ~ly~~~~~p~~~rv~~~L~~~gl---~~e~~~v~~~~~~~~~~~~np~~~vP~L~~-~~g~~   59 (71)
T cd03060           2 ILYSFRRCPYAMRARMALLLAGI---TVELREVELKNKPAEMLAASPKGTVPVLVL-GNGTV   59 (71)
T ss_pred             EEEecCCCcHHHHHHHHHHHcCC---CcEEEEeCCCCCCHHHHHHCCCCCCCEEEE-CCCcE
Confidence            35778999999999887765522   25555666543 345555567789999965 33544

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r

>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds

Probab=95.82  E-value=0.19  Score=29.97  Aligned_cols=90  Identities=10%  Similarity=0.172  Sum_probs=55.9

Q ss_pred             EEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCC-CcEEEEEeCCcchhhhhhCCCcceeEEEE
Q 032502           27 SLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP-SLMFLLVDVDELVEFSTSWDIKATPTFFF  105 (139)
Q Consensus        27 ~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~-~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~  105 (139)
                      ..+.+.++.+..+    ..+++++|-|+...-.   .....+.++++.+. ++.|....   ...+...+++  .|++++
T Consensus         3 ~~i~s~~~l~~f~----~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d~~F~~~~---~~~~~~~~~~--~~~ivl   70 (104)
T cd03069           3 VELRTEAEFEKFL----SDDDASVVGFFEDEDS---KLLSEFLKAADTLRESFRFAHTS---DKQLLEKYGY--GEGVVL   70 (104)
T ss_pred             cccCCHHHHHHHh----ccCCcEEEEEEcCCCc---hHHHHHHHHHHhhhhcCEEEEEC---hHHHHHhcCC--CCceEE
Confidence            3445555555544    3466777777765443   35567777787774 57775543   3466678888  577777


Q ss_pred             Ee---------CCeEEEEEeCC-ChHHHHHHHHHH
Q 032502          106 LK---------DGQQVDKLVGA-NKPELQKKVAAA  130 (139)
Q Consensus       106 ~~---------~g~~~~~~~g~-~~~~l~~~i~~~  130 (139)
                      ++         .+..  .+.|. +.+.|.+||...
T Consensus        71 ~~p~~~~~k~de~~~--~y~g~~~~~~l~~fi~~~  103 (104)
T cd03069          71 FRPPRLSNKFEDSSV--KFDGDLDSSKIKKFIREN  103 (104)
T ss_pred             EechhhhcccCcccc--cccCcCCHHHHHHHHHhh
Confidence            72         2222  35565 778899888653

It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=95.81  E-value=0.043  Score=40.13  Aligned_cols=81  Identities=19%  Similarity=0.358  Sum_probs=62.6

Q ss_pred             CCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhhhhhCCCcceeEEEEEeCCeEEEEEeCC-ChHHH
Q 032502           45 EGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGA-NKPEL  123 (139)
Q Consensus        45 ~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~l  123 (139)
                      .+..-+=-|++-.|..|-.+...|+-+.-..|++.-..||-.-..+-.+.-+|+++||+++  ||+....  |. +.++|
T Consensus       115 ~g~~~FETy~SltC~nCPDVVQALN~msvlNp~I~H~~IdGa~Fq~Evear~IMaVPtvfl--nGe~fg~--GRmtleei  190 (520)
T COG3634         115 DGDFHFETYFSLTCHNCPDVVQALNLMSVLNPRIKHTAIDGALFQDEVEARNIMAVPTVFL--NGEEFGQ--GRMTLEEI  190 (520)
T ss_pred             CCceeEEEEEEeeccCChHHHHHHHHHHhcCCCceeEEecchhhHhHHHhccceecceEEE--cchhhcc--cceeHHHH
Confidence            3555566778889999999999999998888999999999876666666678999999988  7765443  55 66666


Q ss_pred             HHHHHH
Q 032502          124 QKKVAA  129 (139)
Q Consensus       124 ~~~i~~  129 (139)
                      ...|..
T Consensus       191 laki~~  196 (520)
T COG3634         191 LAKIDT  196 (520)
T ss_pred             HHHhcC
Confidence            655543

>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx

Probab=95.77  E-value=0.012  Score=35.31  Aligned_cols=32  Identities=13%  Similarity=0.315  Sum_probs=24.9

Q ss_pred             EEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCc
Q 032502           51 ANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDE   87 (139)
Q Consensus        51 v~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~   87 (139)
                      ..|+.++|++|++....|++.     ++.|-.+|+.+
T Consensus         2 ~iY~~~~C~~c~ka~~~L~~~-----~i~~~~idi~~   33 (105)
T cd02977           2 TIYGNPNCSTSRKALAWLEEH-----GIEYEFIDYLK   33 (105)
T ss_pred             EEEECCCCHHHHHHHHHHHHc-----CCCcEEEeecc
Confidence            468899999999999888764     66666777654

ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.

>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=95.68  E-value=0.11  Score=34.75  Aligned_cols=42  Identities=12%  Similarity=0.119  Sum_probs=34.0

Q ss_pred             hhhhCCCcceeEEEEEeCCeEEEEEeC--C-ChHHHHHHHHHHhh
Q 032502           91 FSTSWDIKATPTFFFLKDGQQVDKLVG--A-NKPELQKKVAAAVD  132 (139)
Q Consensus        91 ~~~~~~v~~~Pt~~~~~~g~~~~~~~g--~-~~~~l~~~i~~~~~  132 (139)
                      ++.++++.++||+++-.||+....-.|  . +.+.+..++.+.+.
T Consensus       166 l~~rlg~~GfPTl~le~ng~~~~l~~g~y~~~~~~~~arl~~~~~  210 (212)
T COG3531         166 LMQRLGAAGFPTLALERNGTMYVLGTGAYFGSPDAWLARLAQRLA  210 (212)
T ss_pred             HHHHhccCCCCeeeeeeCCceEeccCCcccCCcHHHHHHHHHHHh
Confidence            466889999999999999998877667  3 77888888877654

>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A

Probab=95.58  E-value=0.17  Score=32.98  Aligned_cols=64  Identities=23%  Similarity=0.247  Sum_probs=48.7

Q ss_pred             hhhHhHHHHHHhCC-CcEEEEEeCCcchhhhhhCCCcceeEEEEEeCC-eEEEEEeC--CChHHHHHHHHHH
Q 032502           63 MIAPFFSELSEKYP-SLMFLLVDVDELVEFSTSWDIKATPTFFFLKDG-QQVDKLVG--ANKPELQKKVAAA  130 (139)
Q Consensus        63 ~~~~~l~~~~~~~~-~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g-~~~~~~~g--~~~~~l~~~i~~~  130 (139)
                      .....+.++++.+. ++.|+.+.   +.++++.+++.. |++++++++ +....+.|  .+.+.|.+||...
T Consensus         7 ~~~~~f~~~A~~~~~~~~F~~~~---~~~~~~~~~~~~-p~i~~~k~~~~~~~~y~~~~~~~~~l~~fI~~~   74 (184)
T PF13848_consen    7 ELFEIFEEAAEKLKGDYQFGVTF---NEELAKKYGIKE-PTIVVYKKFDEKPVVYDGDKFTPEELKKFIKKN   74 (184)
T ss_dssp             HHHHHHHHHHHHHTTTSEEEEEE----HHHHHHCTCSS-SEEEEEECTTTSEEEESSSTTSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCcCCcEEEEEc---HHHHHHHhCCCC-CcEEEeccCCCCceecccccCCHHHHHHHHHHh
Confidence            34567788888887 58888887   677889999999 999999663 33344556  3899999999875

...

>PHA03075 glutaredoxin-like protein; Provisional

Probab=95.47  E-value=0.034  Score=33.77  Aligned_cols=30  Identities=27%  Similarity=0.559  Sum_probs=26.9

Q ss_pred             CEEEEEEeCCCChhhhhhhHhHHHHHHhCC
Q 032502           47 KIVIANFSATWCGPCRMIAPFFSELSEKYP   76 (139)
Q Consensus        47 k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~   76 (139)
                      |.+++.|..|.|+-|......+.++..+|.
T Consensus         2 K~tLILfGKP~C~vCe~~s~~l~~ledeY~   31 (123)
T PHA03075          2 KKTLILFGKPLCSVCESISEALKELEDEYD   31 (123)
T ss_pred             CceEEEeCCcccHHHHHHHHHHHHhhcccc
Confidence            568899999999999999999988888874

>KOG0852 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]

Probab=95.15  E-value=0.17  Score=33.20  Aligned_cols=94  Identities=20%  Similarity=0.230  Sum_probs=59.8

Q ss_pred             HHHHHHhhCCCEEEEEEe-CCCChhhhhhhHhHHHHHHhCC--CcEEEEEeCC---------------------------
Q 032502           37 QKMSEASKEGKIVIANFS-ATWCGPCRMIAPFFSELSEKYP--SLMFLLVDVD---------------------------   86 (139)
Q Consensus        37 ~~~~~~~~~~k~vlv~f~-~~~C~~C~~~~~~l~~~~~~~~--~v~~~~vd~~---------------------------   86 (139)
                      +.+.+..+.+|.|++.|| ..+--.|-...-.+.+.+.++.  +..++.+.+|                           
T Consensus        24 ~e~~L~dy~gkyvvlfFyplDftfVcPteIiafSd~~~eF~~~n~eVig~S~DS~fshlAW~ntprk~gGlg~~~iPlls  103 (196)
T KOG0852|consen   24 KEIKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSDRAPEFRKLNTEVLGISTDSVFSHLAWINTPRKQGGLGPLNIPLLS  103 (196)
T ss_pred             eEEeehhhcccEEEEEecCCceeeECchhhhhhhhhHHHHHhcCCeEEEEeccchhhhhhHhcCchhhCCcCccccceee
Confidence            345555677899999998 5555567666666666666654  3444444443                           


Q ss_pred             -cchhhhhhCCC----ccee---EEEEEeCCeEEEEE-----eCCChHHHHHHHHHH
Q 032502           87 -ELVEFSTSWDI----KATP---TFFFLKDGQQVDKL-----VGANKPELQKKVAAA  130 (139)
Q Consensus        87 -~~~~~~~~~~v----~~~P---t~~~~~~g~~~~~~-----~g~~~~~l~~~i~~~  130 (139)
                       .+.++++.|||    .+++   .+|+..+|...+.-     .|.+.++....++.+
T Consensus       104 D~~~~IsrdyGvL~~~~G~~lRglfIId~~gi~R~it~NDlpvgRSVdE~lRLvqAf  160 (196)
T KOG0852|consen  104 DLNHEISRDYGVLKEDEGIALRGLFIIDPDGILRQITINDLPVGRSVDETLRLVQAF  160 (196)
T ss_pred             ccchhhHHhcCceecCCCcceeeeEEEccccceEEeeecccCCCccHHHHHHHHHHH
Confidence             34667888987    3555   46666888776532     244777777766654

>PRK01655 spxA transcriptional regulator Spx; Reviewed

Probab=95.06  E-value=0.045  Score=34.27  Aligned_cols=33  Identities=18%  Similarity=0.426  Sum_probs=24.8

Q ss_pred             EEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCc
Q 032502           50 IANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDE   87 (139)
Q Consensus        50 lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~   87 (139)
                      +..|+.++|+.|++....|.+.     ++.|-.+|+.+
T Consensus         2 i~iY~~~~C~~C~ka~~~L~~~-----gi~~~~idi~~   34 (131)
T PRK01655          2 VTLFTSPSCTSCRKAKAWLEEH-----DIPFTERNIFS   34 (131)
T ss_pred             EEEEeCCCChHHHHHHHHHHHc-----CCCcEEeeccC
Confidence            4567899999999998877654     56666667653

>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC

Probab=95.05  E-value=0.037  Score=33.57  Aligned_cols=33  Identities=18%  Similarity=0.401  Sum_probs=25.6

Q ss_pred             EEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcc
Q 032502           51 ANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDEL   88 (139)
Q Consensus        51 v~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~   88 (139)
                      ..|+.++|+.|++....|++.     ++.|-.+|+.++
T Consensus         2 ~iY~~~~C~~c~ka~~~L~~~-----~i~~~~idi~~~   34 (111)
T cd03036           2 KFYEYPKCSTCRKAKKWLDEH-----GVDYTAIDIVEE   34 (111)
T ss_pred             EEEECCCCHHHHHHHHHHHHc-----CCceEEecccCC
Confidence            457899999999999888664     677777777644

Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.

>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family

Probab=94.86  E-value=0.052  Score=33.18  Aligned_cols=34  Identities=12%  Similarity=0.377  Sum_probs=26.5

Q ss_pred             EEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcch
Q 032502           51 ANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELV   89 (139)
Q Consensus        51 v~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~   89 (139)
                      ..|+.++|+.|+.....|++.     ++.|..+|+.+++
T Consensus         2 ~iY~~~~C~~c~ka~~~L~~~-----~i~~~~idi~~~~   35 (117)
T TIGR01617         2 KVYGSPNCTTCKKARRWLEAN-----GIEYQFIDIGEDG   35 (117)
T ss_pred             EEEeCCCCHHHHHHHHHHHHc-----CCceEEEecCCCh
Confidence            457899999999999888763     6777777876543

This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.

>KOG2640 consensus Thioredoxin [Function unknown]

Probab=94.50  E-value=0.015  Score=41.31  Aligned_cols=86  Identities=21%  Similarity=0.329  Sum_probs=62.0

Q ss_pred             CCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEe-CCcchhhhhhCCCcceeEEEEEeCCeEEEEEeCC-ChHHH
Q 032502           46 GKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVD-VDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGA-NKPEL  123 (139)
Q Consensus        46 ~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd-~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~l  123 (139)
                      ..++-+.||+.||+..+...+.+.-....++.+....++ .-.-+...++|++.+.|++++... ..-.++.|. ....|
T Consensus        76 ~~~vs~~fy~s~C~fsr~~~~~fd~~~sl~~~i~h~~vee~~~lpsv~s~~~~~~~ps~~~~n~-t~~~~~~~~r~l~sL  154 (319)
T KOG2640|consen   76 NDYVSLLFYASWCPFSRAVRPEFDVRSSLFSSIQHFAVEESQALPSVFSSYGIHSEPSNLMLNQ-TCPASYRGERDLASL  154 (319)
T ss_pred             CCcccccchhcccCcccccCcccchhhhhccccccccHHHHhhcccchhccccccCCcceeecc-ccchhhcccccHHHH
Confidence            568889999999999999999998888888754444432 223456788999999999888632 222344455 67777


Q ss_pred             HHHHHHHhh
Q 032502          124 QKKVAAAVD  132 (139)
Q Consensus       124 ~~~i~~~~~  132 (139)
                      ..+..+++.
T Consensus       155 v~fy~~i~~  163 (319)
T KOG2640|consen  155 VNFYTEITP  163 (319)
T ss_pred             HHHHHhhcc
Confidence            777776654

>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function

Probab=94.50  E-value=0.2  Score=34.86  Aligned_cols=38  Identities=11%  Similarity=0.071  Sum_probs=31.3

Q ss_pred             hCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEE
Q 032502           44 KEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFL   81 (139)
Q Consensus        44 ~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~   81 (139)
                      ..+|+.+++..+.|||+|...+=.|-....+|+++.+.
T Consensus        56 ~~Gk~~v~~igw~gCP~~A~~sW~L~~ALsrfGn~~l~   93 (249)
T PF06053_consen   56 PNGKPEVIFIGWEGCPYCAAESWALYIALSRFGNFSLE   93 (249)
T ss_pred             CCCeeEEEEEecccCccchhhHHHHHHHHHhcCCeeeE
Confidence            56899999999999999998877777777788876433

>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC

Probab=94.48  E-value=0.063  Score=32.27  Aligned_cols=33  Identities=6%  Similarity=0.196  Sum_probs=25.2

Q ss_pred             EEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcc
Q 032502           51 ANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDEL   88 (139)
Q Consensus        51 v~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~   88 (139)
                      ..|+.++|+.|++....|++-     ++.|-.+|+.++
T Consensus         2 ~iy~~~~C~~crka~~~L~~~-----~i~~~~~di~~~   34 (105)
T cd03035           2 TLYGIKNCDTVKKARKWLEAR-----GVAYTFHDYRKD   34 (105)
T ss_pred             EEEeCCCCHHHHHHHHHHHHc-----CCCeEEEecccC
Confidence            468899999999999887655     666667776543

The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.

>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress

Probab=94.46  E-value=0.14  Score=27.16  Aligned_cols=55  Identities=15%  Similarity=0.021  Sum_probs=35.1

Q ss_pred             EEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcch--hhhhhCCCcceeEEEEEeCCeE
Q 032502           52 NFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELV--EFSTSWDIKATPTFFFLKDGQQ  111 (139)
Q Consensus        52 ~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~--~~~~~~~v~~~Pt~~~~~~g~~  111 (139)
                      .|+.++|+.|.+.+-.+....-   .+....++.....  .+.+..+...+|++..  +|..
T Consensus         3 ly~~~~~~~~~~~~~~l~~~~i---~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~--~~~~   59 (71)
T cd00570           3 LYYFPGSPRSLRVRLALEEKGL---PYELVPVDLGEGEQEEFLALNPLGKVPVLED--GGLV   59 (71)
T ss_pred             EEeCCCCccHHHHHHHHHHcCC---CcEEEEeCCCCCCCHHHHhcCCCCCCCEEEE--CCEE
Confidence            5778899999998887766622   2444445443322  2455567788998876  4543

In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma

>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E

Probab=94.28  E-value=0.44  Score=25.94  Aligned_cols=69  Identities=12%  Similarity=0.044  Sum_probs=40.7

Q ss_pred             EEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcc-hhhhhhCCCcceeEEEEEeCCeEEEEEeCCChHHHHHHHHH
Q 032502           51 ANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDEL-VEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKVAA  129 (139)
Q Consensus        51 v~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~-~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~l~~~i~~  129 (139)
                      ..|+.++|++|++.+-.++...-   ++....++.... +++.+......+|++.  .+|..+.     ....|...|.+
T Consensus         2 ~ly~~~~~~~~~~v~~~l~~~gi---~~~~~~v~~~~~~~~~~~~~p~~~vP~l~--~~~~~l~-----es~aI~~yL~~   71 (73)
T cd03059           2 TLYSGPDDVYSHRVRIVLAEKGV---SVEIIDVDPDNPPEDLAELNPYGTVPTLV--DRDLVLY-----ESRIIMEYLDE   71 (73)
T ss_pred             EEEECCCChhHHHHHHHHHHcCC---ccEEEEcCCCCCCHHHHhhCCCCCCCEEE--ECCEEEE-----cHHHHHHHHHh
Confidence            45778999999999887755522   233444454432 3444555677899774  2443222     45556665543

coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.

>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []

Probab=94.23  E-value=0.45  Score=32.72  Aligned_cols=43  Identities=21%  Similarity=0.430  Sum_probs=36.7

Q ss_pred             hCCCEEEEEEeCCCChhhhhhhHhHHHHHHh-----CCCcEEEEEeCC
Q 032502           44 KEGKIVIANFSATWCGPCRMIAPFFSELSEK-----YPSLMFLLVDVD   86 (139)
Q Consensus        44 ~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~-----~~~v~~~~vd~~   86 (139)
                      ..|+++||-+-..+|..|......|+.|..+     +++|.|+.||--
T Consensus        24 ~~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~   71 (238)
T PF04592_consen   24 SLGHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQ   71 (238)
T ss_pred             cCCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCC
Confidence            5689999999999999999999999888755     457999999864

It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding

>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A

Probab=94.13  E-value=0.51  Score=26.11  Aligned_cols=69  Identities=13%  Similarity=0.135  Sum_probs=47.7

Q ss_pred             EeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCc-chhhhhhCCCcceeEEEEEeCCeEEEEEeCCChHHHHHHHHHHh
Q 032502           53 FSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDE-LVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKVAAAV  131 (139)
Q Consensus        53 f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~-~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~l~~~i~~~~  131 (139)
                      ++.++|++|++++-.++...-   .+.+..++..+ ...+.+..+-..+|++.  .+|..+.     +...|.+.|++.-
T Consensus         2 y~~~~Sp~~~kv~~~l~~~~i---~~~~~~v~~~~~~~~~~~~~p~~~vPvL~--~~g~~l~-----dS~~I~~yL~~~~   71 (75)
T PF13417_consen    2 YGFPGSPYSQKVRLALEEKGI---PYELVPVDPEEKRPEFLKLNPKGKVPVLV--DDGEVLT-----DSAAIIEYLEERY   71 (75)
T ss_dssp             EEETTSHHHHHHHHHHHHHTE---EEEEEEEBTTSTSHHHHHHSTTSBSSEEE--ETTEEEE-----SHHHHHHHHHHHS
T ss_pred             CCcCCChHHHHHHHHHHHcCC---eEEEeccCcccchhHHHhhcccccceEEE--ECCEEEe-----CHHHHHHHHHHHc
Confidence            678999999999887766521   25555665554 35566666788999997  4576444     6677777777654

...

>PF07689 KaiB: KaiB domain; InterPro: IPR011649 The cyanobacterial clock proteins KaiA and KaiB are proposed as regulators of the circadian rhythm in cyanobacteria

Probab=94.09  E-value=0.023  Score=32.59  Aligned_cols=53  Identities=25%  Similarity=0.233  Sum_probs=43.5

Q ss_pred             EeCCCChhhhhhhHhHHHHHHhCC--CcEEEEEeCCcchhhhhhCCCcceeEEEE
Q 032502           53 FSATWCGPCRMIAPFFSELSEKYP--SLMFLLVDVDELVEFSTSWDIKATPTFFF  105 (139)
Q Consensus        53 f~~~~C~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~  105 (139)
                      |-+...+.+......++.+.+.+-  .+.+-.||+.+++++++.++|-.+||++-
T Consensus         3 yV~g~~~~s~~a~~~l~~l~~~~l~~~~~LeVIDv~~~P~lAe~~~ivAtPtLik   57 (82)
T PF07689_consen    3 YVAGRTPSSERAIENLRRLCEEYLGGRYELEVIDVLEQPELAEEDRIVATPTLIK   57 (82)
T ss_dssp             EESSBHHHHHHHHHHHHHHHHCHCTTTEEEEEEETTTSHSHHTTTEEECHHHHHT
T ss_pred             EECCCChHHHHHHHHHHHHHHhhCCCcEEEEEEEcccCHhHHhHCCeeecceEee
Confidence            445556677888888888877753  38899999999999999999999998764

Mutations in both proteins have been reported to alter or abolish circadian rhythmicity. KaiB adopts an alpha-beta meander motif and is found to be a dimer [].; GO: 0048511 rhythmic process; PDB: 1T4Y_A 1T4Z_A 1R5P_B 2QKE_F 1VGL_A 1WWJ_D.

>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes

Probab=93.93  E-value=0.13  Score=31.29  Aligned_cols=34  Identities=18%  Similarity=0.368  Sum_probs=25.6

Q ss_pred             EEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcc
Q 032502           50 IANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDEL   88 (139)
Q Consensus        50 lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~   88 (139)
                      +..|+.++|+.|++....|++.     ++.|-.+|+.++
T Consensus         2 i~iY~~~~C~~c~ka~~~L~~~-----gi~~~~idi~~~   35 (115)
T cd03032           2 IKLYTSPSCSSCRKAKQWLEEH-----QIPFEERNLFKQ   35 (115)
T ss_pred             EEEEeCCCCHHHHHHHHHHHHC-----CCceEEEecCCC
Confidence            3467899999999999888664     666667777543

It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.

>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1

Probab=93.65  E-value=0.22  Score=30.17  Aligned_cols=49  Identities=27%  Similarity=0.365  Sum_probs=40.7

Q ss_pred             HHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCC--CcEEEEEeCCc
Q 032502           38 KMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP--SLMFLLVDVDE   87 (139)
Q Consensus        38 ~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~   87 (139)
                      .+.+...++|++||.=.|+.|+.-. ....|+++.++|.  ++.++..-+.+
T Consensus        13 ~v~l~~y~Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~~gl~ILaFPcnq   63 (108)
T PF00255_consen   13 PVSLSKYKGKVLLIVNVASKCGYTK-QYKQLNELYEKYKDKGLEILAFPCNQ   63 (108)
T ss_dssp             EEEGGGGTTSEEEEEEEESSSTTHH-HHHHHHHHHHHHGGGTEEEEEEEBST
T ss_pred             EECHHHcCCCEEEEEecccccCCcc-ccHHHHHHHHHHhcCCeEEEeeehHH
Confidence            3455668899999999999999988 8889999999997  57777777753

11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....

>PRK12559 transcriptional regulator Spx; Provisional

Probab=93.62  E-value=0.15  Score=31.97  Aligned_cols=32  Identities=13%  Similarity=0.408  Sum_probs=23.6

Q ss_pred             EEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCC
Q 032502           50 IANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVD   86 (139)
Q Consensus        50 lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~   86 (139)
                      +..|+.++|+.|++....|++-     ++.|-.+|+.
T Consensus         2 i~iY~~~~C~~crkA~~~L~~~-----gi~~~~~di~   33 (131)
T PRK12559          2 VVLYTTASCASCRKAKAWLEEN-----QIDYTEKNIV   33 (131)
T ss_pred             EEEEeCCCChHHHHHHHHHHHc-----CCCeEEEEee
Confidence            4568899999999988777654     5555566654

>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress

Probab=93.53  E-value=0.54  Score=25.68  Aligned_cols=56  Identities=20%  Similarity=0.168  Sum_probs=36.4

Q ss_pred             EEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCc----chhhhhhCCCcceeEEEEEeCCeE
Q 032502           51 ANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDE----LVEFSTSWDIKATPTFFFLKDGQQ  111 (139)
Q Consensus        51 v~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~----~~~~~~~~~v~~~Pt~~~~~~g~~  111 (139)
                      ..|+.++|+.|++.+-.+.+..-   ++....++..+    .+++.+......+|++..  +|..
T Consensus         2 ~Ly~~~~~~~~~~v~~~l~~~gi---~~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~--~~~~   61 (74)
T cd03045           2 DLYYLPGSPPCRAVLLTAKALGL---ELNLKEVNLMKGEHLKPEFLKLNPQHTVPTLVD--NGFV   61 (74)
T ss_pred             EEEeCCCCCcHHHHHHHHHHcCC---CCEEEEecCccCCcCCHHHHhhCcCCCCCEEEE--CCEE
Confidence            35788999999988887766522   24445555432    245555566778999964  4543

GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.

>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins

Probab=93.42  E-value=0.72  Score=28.60  Aligned_cols=54  Identities=13%  Similarity=0.102  Sum_probs=35.3

Q ss_pred             CcEEEEEeCCcchh----------hhhhCCCcceeEEEEEeCCeEEEEEeCCChHHHHHHHHHHhh
Q 032502           77 SLMFLLVDVDELVE----------FSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKVAAAVD  132 (139)
Q Consensus        77 ~v~~~~vd~~~~~~----------~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~l~~~i~~~~~  132 (139)
                      ++.+.+.|..+++.          +...-|....|.+++  ||+++..-..++.++|.+|+.--..
T Consensus        40 gv~v~RyNL~~~P~aF~~n~~V~~~L~~~G~e~LPitlV--dGeiv~~G~YPt~eEl~~~~~i~~~  103 (123)
T PF06953_consen   40 GVEVERYNLAQNPQAFVENPEVNQLLQTEGAEALPITLV--DGEIVKTGRYPTNEELAEWLGISFS  103 (123)
T ss_dssp             T-EEEEEETTT-TTHHHHSHHHHHHHHHH-GGG-SEEEE--TTEEEEESS---HHHHHHHHT--GG
T ss_pred             CceEEEEccccCHHHHHhCHHHHHHHHHcCcccCCEEEE--CCEEEEecCCCCHHHHHHHhCCCcc
Confidence            79999999987654          234458899999999  9999887444499999988765433

ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.

>COG5429 Uncharacterized secreted protein [Function unknown]

Probab=93.28  E-value=0.41  Score=32.94  Aligned_cols=82  Identities=18%  Similarity=0.328  Sum_probs=56.5

Q ss_pred             CEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCC------------------cchhhhhhCCCcceeEEEEEeC
Q 032502           47 KIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVD------------------ELVEFSTSWDIKATPTFFFLKD  108 (139)
Q Consensus        47 k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~------------------~~~~~~~~~~v~~~Pt~~~~~~  108 (139)
                      .-||=.|.+..|..|-.....|.+++++ +++.-...+.|                  ......+.|+-.+++|=-.+-|
T Consensus        42 ~~VVELfTSQGCsSCPPAd~~l~k~a~~-~~vlALsyhVdYWdYlGWkDtlar~enTeRQ~aY~~a~g~~~vyTPQavvn  120 (261)
T COG5429          42 LGVVELFTSQGCSSCPPADANLAKLADD-PGVLALSYHVDYWDYLGWKDTLARKENTERQRAYARAFGARGVYTPQAVVN  120 (261)
T ss_pred             ceEEEEeecCCcCCCChHHHHHHHhccC-CCEEEEEEeecccccCCccccccchhhhHHHHHHHHhhccCCCCCchheee
Confidence            4556667799999999999999999877 35444444433                  1234566777777666444448


Q ss_pred             CeEEEEEeCCChHHHHHHHHHHh
Q 032502          109 GQQVDKLVGANKPELQKKVAAAV  131 (139)
Q Consensus       109 g~~~~~~~g~~~~~l~~~i~~~~  131 (139)
                      |+....  |.+..+|.+.|...-
T Consensus       121 Gr~~~~--Gad~~~i~~~i~a~~  141 (261)
T COG5429         121 GRVHAN--GADPGAIEDAIAAMA  141 (261)
T ss_pred             chhhhc--CCCHHHHHHHHHHhh
Confidence            876554  668888888887764

>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC

Probab=93.27  E-value=1.3  Score=27.81  Aligned_cols=71  Identities=20%  Similarity=0.206  Sum_probs=40.8

Q ss_pred             hHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhhhhhCCCcceeEEEEEeCCe
Q 032502           33 DIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQ  110 (139)
Q Consensus        33 ~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~  110 (139)
                      ..+.+.+..+...+-++++.=+-..  .-+.....+.++..+-..     .++.=++.+.++|+|+.+|++++.+++.
T Consensus        12 ~~Lk~l~~~a~~~g~~~VlRG~~~~--~~~~T~~~i~~L~~~~~~-----~~v~IdP~lF~~f~I~~VPa~V~~~~~~   82 (130)
T TIGR02742        12 PLLKQLLDQAEALGAPLVIRGLLDN--GFKATATRIQSLIKDGGK-----SGVQIDPQWFKQFDITAVPAFVVVKDGL   82 (130)
T ss_pred             HHHHHHHHHHHHhCCeEEEeCCCCC--CHHHHHHHHHHHHhcCCC-----CcEEEChHHHhhcCceEcCEEEEECCCC
Confidence            3444555555454544444323333  123444455555444322     2222368899999999999999998774

This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.

>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S

Probab=92.98  E-value=0.41  Score=26.01  Aligned_cols=52  Identities=15%  Similarity=0.174  Sum_probs=34.6

Q ss_pred             EEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCC----cchhhhhhCCCcceeEEEE
Q 032502           51 ANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVD----ELVEFSTSWDIKATPTFFF  105 (139)
Q Consensus        51 v~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~----~~~~~~~~~~v~~~Pt~~~  105 (139)
                      ..|+.++|++|++.+-.+....-   .+....++..    ..+++.+......+|++..
T Consensus         2 ~Ly~~~~s~~~~~~~~~L~~~~l---~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~   57 (74)
T cd03051           2 KLYDSPTAPNPRRVRIFLAEKGI---DVPLVTVDLAAGEQRSPEFLAKNPAGTVPVLEL   57 (74)
T ss_pred             EEEeCCCCcchHHHHHHHHHcCC---CceEEEeecccCccCCHHHHhhCCCCCCCEEEe
Confidence            35778899999999988866622   2344455542    2344555566778999975

cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.

>PRK13344 spxA transcriptional regulator Spx; Reviewed

Probab=92.34  E-value=0.31  Score=30.58  Aligned_cols=32  Identities=13%  Similarity=0.392  Sum_probs=23.7

Q ss_pred             EEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCC
Q 032502           50 IANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVD   86 (139)
Q Consensus        50 lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~   86 (139)
                      +..|+.++|+.|+.....|++-     ++.|-.+|+.
T Consensus         2 i~iY~~~~C~~crkA~~~L~~~-----~i~~~~~d~~   33 (132)
T PRK13344          2 IKIYTISSCTSCKKAKTWLNAH-----QLSYKEQNLG   33 (132)
T ss_pred             EEEEeCCCCHHHHHHHHHHHHc-----CCCeEEEECC
Confidence            3467899999999988776553     5666667664

>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress

Probab=91.67  E-value=1.6  Score=25.09  Aligned_cols=53  Identities=9%  Similarity=0.097  Sum_probs=34.6

Q ss_pred             EEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcc-hhhhhhCCCcceeEEEE
Q 032502           50 IANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDEL-VEFSTSWDIKATPTFFF  105 (139)
Q Consensus        50 lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~-~~~~~~~~v~~~Pt~~~  105 (139)
                      +..|+.+.|++|++.+-.+....-   ++.++.++.... .++.+......+|++..
T Consensus        19 ~~Ly~~~~sp~~~kv~~~L~~~gl---~~~~~~v~~~~~~~~~~~~np~~~vPvL~~   72 (89)
T cd03055          19 IRLYSMRFCPYAQRARLVLAAKNI---PHEVININLKDKPDWFLEKNPQGKVPALEI   72 (89)
T ss_pred             EEEEeCCCCchHHHHHHHHHHcCC---CCeEEEeCCCCCcHHHHhhCCCCCcCEEEE
Confidence            444668889999998877765421   245555555433 33555556778999875

The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega

>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle

Probab=90.93  E-value=2.3  Score=25.72  Aligned_cols=86  Identities=15%  Similarity=0.197  Sum_probs=61.9

Q ss_pred             CCEEEEEEeCCCChhhhhhhHhHHHHHHhCC---CcEEEEEeCCcchhhh----hhCCCc-ceeEEEEE--eCCeEEEE-
Q 032502           46 GKIVIANFSATWCGPCRMIAPFFSELSEKYP---SLMFLLVDVDELVEFS----TSWDIK-ATPTFFFL--KDGQQVDK-  114 (139)
Q Consensus        46 ~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~---~v~~~~vd~~~~~~~~----~~~~v~-~~Pt~~~~--~~g~~~~~-  114 (139)
                      +...++.|-.+..+.-..|.+.++++++++.   +..|+.||.|+-+-+.    +.|+|. .-|.+=++  .+..-+.. 
T Consensus        20 ~g~~IvAFaee~dpdG~eFl~ilk~vA~~nt~np~LsiIWIDPD~FPllv~yWektF~IDl~~PqIGVV~vtdadSvW~~   99 (120)
T cd03074          20 DGIHIVAFAEEEDPDGYEFLEILKEVARDNTDNPDLSIIWIDPDDFPLLVPYWEKTFGIDLFRPQIGVVNVTDADSVWME   99 (120)
T ss_pred             CCceEEEEeccCCccHHHHHHHHHHHHHhcCcCCCceEEEECCccCchhhHHHHhhcCcccCCCceeeEecccccceeEe
Confidence            4677888999999999999999999999985   5999999999877654    355653 34765555  33332322 


Q ss_pred             Ee---C-CChHHHHHHHHHHh
Q 032502          115 LV---G-ANKPELQKKVAAAV  131 (139)
Q Consensus       115 ~~---g-~~~~~l~~~i~~~~  131 (139)
                      ..   . .+.++|+++|+..+
T Consensus       100 m~~~~d~~t~~~Le~WiedVL  120 (120)
T cd03074         100 MDDDEDLPTAEELEDWIEDVL  120 (120)
T ss_pred             cccccccCcHHHHHHHHHhhC
Confidence            11   2 27888999988754

It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin

>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]

Probab=90.63  E-value=2.6  Score=25.67  Aligned_cols=70  Identities=20%  Similarity=0.203  Sum_probs=38.2

Q ss_pred             hHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhhhhhCCCcceeEEEEEeC
Q 032502           33 DIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKD  108 (139)
Q Consensus        33 ~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~  108 (139)
                      ..+.+.+..+...+-++++.=+.+.  .=......+.++..+.+..    .++.=++.+.++|+|..+|++++.++
T Consensus        11 ~~L~~l~~~a~~~~~~~V~RG~~~g--~~~~t~~~~~~l~~~~~~~----~~v~IdP~~F~~y~I~~VPa~V~~~~   80 (113)
T PF09673_consen   11 ASLRNLLKQAERAGVVVVFRGFPDG--SFKPTAKAIQELLRKDDPC----PGVQIDPRLFRQYNITAVPAFVVVKD   80 (113)
T ss_pred             HHHHHHHHHHHhCCcEEEEECCCCC--CHHHHHHHHHHHhhccCCC----cceeEChhHHhhCCceEcCEEEEEcC
Confidence            4444555555444333322222222  2233344444444443322    23333688899999999999999977

The N-terminal portion of these proteins is heterogeneous.

>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds

Probab=90.55  E-value=2.5  Score=25.37  Aligned_cols=71  Identities=7%  Similarity=0.028  Sum_probs=43.2

Q ss_pred             eEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhC-CCcEEEEEeCCcchhhhhhCCCcceeEEE
Q 032502           26 VSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKY-PSLMFLLVDVDELVEFSTSWDIKATPTFF  104 (139)
Q Consensus        26 ~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~-~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~  104 (139)
                      +..+.+.++++..+.   ..++++||-|+...-+   .....+.++++.+ .++.|....   +..+...+++.. |.++
T Consensus         2 v~~i~s~~ele~f~~---~~~~~~VVG~F~~~~~---~~~~~F~~vA~~~Rdd~~F~~t~---~~~~~~~~~~~~-~~vv   71 (107)
T cd03068           2 SKQLQTLKQVQEFLR---DGDDVIIIGVFSGEED---PAYQLYQDAANSLREDYKFHHTF---DSEIFKSLKVSP-GQLV   71 (107)
T ss_pred             ceEcCCHHHHHHHHh---cCCCEEEEEEECCCCC---HHHHHHHHHHHhcccCCEEEEEC---hHHHHHhcCCCC-CceE
Confidence            345666666666552   2226777777765433   3556677888888 457775543   346667778764 5555


Q ss_pred             EE
Q 032502          105 FL  106 (139)
Q Consensus       105 ~~  106 (139)
                      ++
T Consensus        72 l~   73 (107)
T cd03068          72 VF   73 (107)
T ss_pred             EE
Confidence            55

It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.

>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif

Probab=90.39  E-value=0.48  Score=31.42  Aligned_cols=35  Identities=20%  Similarity=0.353  Sum_probs=25.8

Q ss_pred             hhhhhhCCCcceeEEEEEeCCeEEEEEeCC-ChHHHHHHH
Q 032502           89 VEFSTSWDIKATPTFFFLKDGQQVDKLVGA-NKPELQKKV  127 (139)
Q Consensus        89 ~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~i  127 (139)
                      ...+...||.++||+++  +|+.  ...|. +.+.|.+.|
T Consensus       165 ~~~a~~~gv~G~Pt~vv--~g~~--~~~G~~~~~~~~~~i  200 (201)
T cd03024         165 EARARQLGISGVPFFVF--NGKY--AVSGAQPPEVFLQAL  200 (201)
T ss_pred             HHHHHHCCCCcCCEEEE--CCeE--eecCCCCHHHHHHHh
Confidence            34566789999999999  6653  34577 788877765

It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.

>PF13778 DUF4174: Domain of unknown function (DUF4174)

Probab=90.30  E-value=2.8  Score=25.66  Aligned_cols=82  Identities=11%  Similarity=0.090  Sum_probs=51.7

Q ss_pred             EEEEEe-CCCChhhhhhhHhHHHHHHhCC--CcEEEEE-eCCcc-----------hhhhhhCCCccee-EEEEE-eCCeE
Q 032502           49 VIANFS-ATWCGPCRMIAPFFSELSEKYP--SLMFLLV-DVDEL-----------VEFSTSWDIKATP-TFFFL-KDGQQ  111 (139)
Q Consensus        49 vlv~f~-~~~C~~C~~~~~~l~~~~~~~~--~v~~~~v-d~~~~-----------~~~~~~~~v~~~P-t~~~~-~~g~~  111 (139)
                      +||.|. +...+.-+.+...|......+.  ++.++.+ +-...           ..+.+.|++..-. +++++ ++|.+
T Consensus        12 ~lvv~aps~~d~~~~~q~~~L~~~~~~l~eRdi~v~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~~~~f~~vLiGKDG~v   91 (118)
T PF13778_consen   12 LLVVFAPSADDPRYQQQLEELQNNRCGLDERDIVVIVITGDGARSPGKPLSPEDIQALRKRLRIPPGGFTVVLIGKDGGV   91 (118)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhhhhccccCceEEEEEeCCccccccCcCCHHHHHHHHHHhCCCCCceEEEEEeCCCcE
Confidence            334344 4566666777777777444444  3555554 32222           2677888865222 34444 99999


Q ss_pred             EEEEeCC-ChHHHHHHHHHH
Q 032502          112 VDKLVGA-NKPELQKKVAAA  130 (139)
Q Consensus       112 ~~~~~g~-~~~~l~~~i~~~  130 (139)
                      ..++... +.++|-+.|+.+
T Consensus        92 K~r~~~p~~~~~lf~~ID~M  111 (118)
T PF13778_consen   92 KLRWPEPIDPEELFDTIDAM  111 (118)
T ss_pred             EEecCCCCCHHHHHHHHhCC
Confidence            9998777 899998888764

>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE

Probab=89.37  E-value=0.78  Score=30.13  Aligned_cols=27  Identities=30%  Similarity=0.641  Sum_probs=24.6

Q ss_pred             EEEEeCCCChhhhhhhHhHHHHHHhCC
Q 032502           50 IANFSATWCGPCRMIAPFFSELSEKYP   76 (139)
Q Consensus        50 lv~f~~~~C~~C~~~~~~l~~~~~~~~   76 (139)
                      |.+|+.+.||+|....+.|.++.+.++
T Consensus         3 i~~~~D~~cp~c~~~~~~l~~l~~~~~   29 (193)
T cd03025           3 LYYFIDPLCGWCYGFEPLLEKLKEEYG   29 (193)
T ss_pred             EEEEECCCCchhhCchHHHHHHHHHhC
Confidence            568889999999999999999999984

FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.

>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs

Probab=88.98  E-value=2.4  Score=22.86  Aligned_cols=56  Identities=18%  Similarity=0.262  Sum_probs=34.7

Q ss_pred             EEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCc----chhhhhhCCCcceeEEEEEeCCeEE
Q 032502           52 NFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDE----LVEFSTSWDIKATPTFFFLKDGQQV  112 (139)
Q Consensus        52 ~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~----~~~~~~~~~v~~~Pt~~~~~~g~~~  112 (139)
                      .|+.+.|+.|.+.+-.+....-   .+....++...    .+++.+......+|++..  +|..+
T Consensus         3 Ly~~~~~~~~~~v~~~l~~~~~---~~~~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~--~~~~i   62 (73)
T cd03056           3 LYGFPLSGNCYKVRLLLALLGI---PYEWVEVDILKGETRTPEFLALNPNGEVPVLEL--DGRVL   62 (73)
T ss_pred             EEeCCCCccHHHHHHHHHHcCC---CcEEEEecCCCcccCCHHHHHhCCCCCCCEEEE--CCEEE
Confidence            5778899999998877766522   24444555422    234444445678999875  45443

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.

>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway

Probab=88.51  E-value=0.8  Score=30.04  Aligned_cols=33  Identities=24%  Similarity=0.391  Sum_probs=23.4

Q ss_pred             hhhhhCCCcceeEEEEEeCCeEEEEEeCC-ChHHHHHHH
Q 032502           90 EFSTSWDIKATPTFFFLKDGQQVDKLVGA-NKPELQKKV  127 (139)
Q Consensus        90 ~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~i  127 (139)
                      ..+.++||.++|++++  +|+   .+.|. ..+.+.+.|
T Consensus       158 ~~a~~~gi~gvPtfvv--~g~---~~~G~~~l~~~~~~l  191 (192)
T cd03022         158 EEAIARGVFGVPTFVV--DGE---MFWGQDRLDMLEEAL  191 (192)
T ss_pred             HHHHHcCCCcCCeEEE--CCe---eecccccHHHHHHHh
Confidence            4466789999999999  775   44577 556555543

It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).

>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC

Probab=88.43  E-value=0.89  Score=27.69  Aligned_cols=32  Identities=9%  Similarity=0.057  Sum_probs=23.3

Q ss_pred             EEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCC
Q 032502           50 IANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVD   86 (139)
Q Consensus        50 lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~   86 (139)
                      +..|+.+.|+.|++....|++-     ++.|-.+|+.
T Consensus         2 i~iy~~p~C~~crkA~~~L~~~-----gi~~~~~d~~   33 (113)
T cd03033           2 IIFYEKPGCANNARQKALLEAA-----GHEVEVRDLL   33 (113)
T ss_pred             EEEEECCCCHHHHHHHHHHHHc-----CCCcEEeehh
Confidence            3567899999999988777554     5556666654

It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.

>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG

Probab=86.91  E-value=1.1  Score=26.91  Aligned_cols=57  Identities=19%  Similarity=0.338  Sum_probs=38.1

Q ss_pred             EeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhhhhhCCCc--ceeEEEE-EeCCe
Q 032502           53 FSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIK--ATPTFFF-LKDGQ  110 (139)
Q Consensus        53 f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~--~~Pt~~~-~~~g~  110 (139)
                      ||-.+|+.|......+... .....+.|+.+.-....++...+++.  ..-+.+. ..+|+
T Consensus         2 ~YDg~C~lC~~~~~~l~~~-d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~   61 (114)
T PF04134_consen    2 FYDGDCPLCRREVRFLRRR-DRGGRLRFVDIQSEPDQALLASYGISPEDADSRLHLIDDGE   61 (114)
T ss_pred             EECCCCHhHHHHHHHHHhc-CCCCCEEEEECCChhhhhHHHhcCcCHHHHcCeeEEecCCC
Confidence            7889999999999988887 22335777776545555555666654  3444444 47776

Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].

>TIGR00014 arsC arsenate reductase (glutaredoxin)

Probab=84.80  E-value=1.6  Score=26.56  Aligned_cols=32  Identities=9%  Similarity=0.153  Sum_probs=24.1

Q ss_pred             EEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCc
Q 032502           51 ANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDE   87 (139)
Q Consensus        51 v~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~   87 (139)
                      ..|+.+.|+.|++....|++.     ++.+..+|+.+
T Consensus         2 ~iy~~~~C~t~rkA~~~L~~~-----~i~~~~~di~~   33 (114)
T TIGR00014         2 TIYHNPRCSKSRNTLALLEDK-----GIEPEVVKYLK   33 (114)
T ss_pred             EEEECCCCHHHHHHHHHHHHC-----CCCeEEEeccC
Confidence            467899999999999887664     56666666643

composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.

>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=84.08  E-value=6.9  Score=23.39  Aligned_cols=71  Identities=23%  Similarity=0.285  Sum_probs=42.5

Q ss_pred             HHHHHhhCCCEEEEEEeC---CCChhhhhhhHhHHHHHHhCCC-cEEEEEeCCcchhhhhhCC-CcceeEEE-EEeCCeE
Q 032502           38 KMSEASKEGKIVIANFSA---TWCGPCRMIAPFFSELSEKYPS-LMFLLVDVDELVEFSTSWD-IKATPTFF-FLKDGQQ  111 (139)
Q Consensus        38 ~~~~~~~~~k~vlv~f~~---~~C~~C~~~~~~l~~~~~~~~~-v~~~~vd~~~~~~~~~~~~-v~~~Pt~~-~~~~g~~  111 (139)
                      .+.....+++++|..=.+   |.|+++.+....|...     + +.|..+|+-+++++..... ...+||+= +|-+|..
T Consensus         7 ~I~~~i~~n~VvLFMKGtp~~P~CGFS~~~vqiL~~~-----g~v~~~~vnVL~d~eiR~~lk~~s~WPT~PQLyi~GEf   81 (105)
T COG0278           7 RIQKQIKENPVVLFMKGTPEFPQCGFSAQAVQILSAC-----GVVDFAYVDVLQDPEIRQGLKEYSNWPTFPQLYVNGEF   81 (105)
T ss_pred             HHHHHhhcCceEEEecCCCCCCCCCccHHHHHHHHHc-----CCcceeEEeeccCHHHHhccHhhcCCCCCceeeECCEE
Confidence            344444556544444444   5677777666655444     4 8899999999988876544 23455532 2248766


Q ss_pred             EE
Q 032502          112 VD  113 (139)
Q Consensus       112 ~~  113 (139)
                      +.
T Consensus        82 vG   83 (105)
T COG0278          82 VG   83 (105)
T ss_pred             ec
Confidence            54

>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli

Probab=83.96  E-value=1.8  Score=26.17  Aligned_cols=31  Identities=13%  Similarity=0.197  Sum_probs=23.0

Q ss_pred             EEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCC
Q 032502           51 ANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVD   86 (139)
Q Consensus        51 v~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~   86 (139)
                      ..|+.+.|..|++....|++.     ++.|..+|+-
T Consensus         2 ~iy~~~~C~t~rkA~~~L~~~-----~i~~~~~di~   32 (112)
T cd03034           2 TIYHNPRCSKSRNALALLEEA-----GIEPEIVEYL   32 (112)
T ss_pred             EEEECCCCHHHHHHHHHHHHC-----CCCeEEEecc
Confidence            467899999999998776554     5666666664

E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.

>COG3011 Predicted thiol-disulfide oxidoreductase [General function prediction only]

Probab=83.12  E-value=9  Score=24.27  Aligned_cols=67  Identities=10%  Similarity=0.149  Sum_probs=48.4

Q ss_pred             CCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhhhhhCCCcce--eEEEEEeCCeEEE
Q 032502           46 GKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKAT--PTFFFLKDGQQVD  113 (139)
Q Consensus        46 ~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~--Pt~~~~~~g~~~~  113 (139)
                      +++-.+.+|---|+.|......|.+.-.. ..+.|+.+.......+.+..++..-  =++++.++|+...
T Consensus         6 ~~p~~vvlyDG~C~lC~~~vrfLi~~D~~-~~i~f~~~q~e~g~~~l~~~~l~~~~~~s~~~~~~g~~~~   74 (137)
T COG3011           6 KKPDLVVLYDGVCPLCDGWVRFLIRRDQG-GRIRFAALQSEPGQALLEAAGLDPEDVDSVLLVEAGQLLV   74 (137)
T ss_pred             CCCCEEEEECCcchhHHHHHHHHHHhccC-CcEEEEeccCchhhhHHhhcCCChhhhheeeEecCCceEe
Confidence            56777889999999999977766554211 2499999988888888787776533  3566668887554

>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells

Probab=83.07  E-value=5.8  Score=21.76  Aligned_cols=57  Identities=9%  Similarity=-0.074  Sum_probs=36.0

Q ss_pred             EEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCc----chhhhhhCCCcceeEEEEEeCCeEE
Q 032502           51 ANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDE----LVEFSTSWDIKATPTFFFLKDGQQV  112 (139)
Q Consensus        51 v~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~----~~~~~~~~~v~~~Pt~~~~~~g~~~  112 (139)
                      ..|+.+.|+.|++++-.+.+..-   .+.+..++...    .+++.+.-....+|++..  +|..+
T Consensus         2 ~ly~~~~s~~s~rv~~~L~e~gl---~~e~~~v~~~~~~~~~~~~~~inP~g~vP~L~~--~g~~l   62 (73)
T cd03052           2 VLYHWTQSFSSQKVRLVIAEKGL---RCEEYDVSLPLSEHNEPWFMRLNPTGEVPVLIH--GDNII   62 (73)
T ss_pred             EEecCCCCccHHHHHHHHHHcCC---CCEEEEecCCcCccCCHHHHHhCcCCCCCEEEE--CCEEE
Confidence            45778889999888866655522   35556666532    234555556778999863  66543

More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.

>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed

Probab=81.20  E-value=9.4  Score=28.17  Aligned_cols=75  Identities=15%  Similarity=0.162  Sum_probs=41.5

Q ss_pred             CCChhhh-hhhHhHHHHHHhCCC----cEEEEEeCC-cc--hhhhhhCCCccee-EEEEEeCCeEEEEEeCC-ChHHHHH
Q 032502           56 TWCGPCR-MIAPFFSELSEKYPS----LMFLLVDVD-EL--VEFSTSWDIKATP-TFFFLKDGQQVDKLVGA-NKPELQK  125 (139)
Q Consensus        56 ~~C~~C~-~~~~~l~~~~~~~~~----v~~~~vd~~-~~--~~~~~~~~v~~~P-t~~~~~~g~~~~~~~g~-~~~~l~~  125 (139)
                      |.|+.|. .......++.+.+.+    +++..+.|- ..  +.....+|+.+-+ .+++|.+|+++.+..+. -.++|.+
T Consensus       272 PgCgR~~~D~~~la~~vee~~~~~~~PlkIAVmGC~VNgpGEa~~aDIGIaG~~~~~~vf~~Gk~v~kv~~~~~~~~l~~  351 (360)
T PRK00366        272 PTCGRTEFDVIQELAEVEQRLEHIKMPLKVAVMGCVVNGPGEAKEADIGIAGGNPKGPVFVDGEKIKTLPEENIVEELEA  351 (360)
T ss_pred             CCCCCCcccHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCCchhhCcEeEecCCCceEEEECCEEeeeeChHhHHHHHHH
Confidence            3344443 234444555555542    677776663 21  2233466776544 68888999998876543 3344444


Q ss_pred             HHHHH
Q 032502          126 KVAAA  130 (139)
Q Consensus       126 ~i~~~  130 (139)
                      .|+++
T Consensus       352 ~i~~~  356 (360)
T PRK00366        352 EIEAY  356 (360)
T ss_pred             HHHHH
Confidence            44443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	139
3d21_A	139	Crystal Structure Of A Poplar Wild-Type Thioredoxin		2e-58
3d22_A	139	Crystal Structure Of A Poplar Thioredoxin H Mutant,		6e-58
1wmj_A	130	Solution Structure Of Thioredoxin Type H From Oryza		2e-27
1xfl_A	124	Solution Structure Of Thioredoxin H1 From Arabidops		7e-27
2vm1_A	118	Crystal Structure Of Barley Thioredoxin H Isoform 1		3e-26
1ti3_A	113	Solution Structure Of The Thioredoxin H1 From Popla		1e-24
2vlt_A	122	Crystal Structure Of Barley Thioredoxin H Isoform 2		2e-22
1trs_A	105	The High-Resolution Three-Dimensional Solution Stru		7e-22
2iwt_A	125	Thioredoxin H2 (Hvtrxh2) In A Mixed Disulfide Compl		2e-21
3trx_A	105	High-Resolution Three-Dimensional Structure Of Redu		2e-21
1mdi_A	105	High Resolution Solution Nmr Structure Of Mixed Dis		7e-21
2hsh_A	105	Crystal Structure Of C73s Mutant Of Human Thioredox		8e-21
3m9j_A	105	Crystal Structure Of Human Thioredoxin C6973S DOUBL		1e-20
2ifq_B	105	Crystal Structure Of S-Nitroso Thioredoxin Length =		1e-20
2ifq_A	105	Crystal Structure Of S-Nitroso Thioredoxin Length =		1e-20
3qfa_C	116	Crystal Structure Of The Human Thioredoxin Reductas		2e-20
1aiu_A	105	Human Thioredoxin (D60n Mutant, Reduced Form) Lengt		3e-20
3kd0_A	105	Human Thioredoxin C35s,C62s,C69s,C73s Mutant Showin		1e-19
3e3e_A	105	Human Thioredoxin Double Mutant C35s,C73r Length =		2e-19
2i9h_A	103	Nmr Solution Structure Of The Reduced Form Of Thior		2e-18
3f3q_A	109	Crystal Structure Of The Oxidised Form Of Thioredox		2e-18
1erw_A	105	Human Thioredoxin Double Mutant With Cys 32 Replace		3e-18
1ep7_A	112	Crystal Structure Of Wt Thioredoxin H From Chlamydo		4e-18
3zzx_A	105	Crystallographic Structure Of Thioredoxin From Lito		6e-18
1ep8_A	112	Crystal Structure Of A Mutated Thioredoxin, D30a, F		8e-18
1syr_A	112	Initial Structural Analysis Of Plasmodium Falciparu		1e-17
2xbi_A	108	Crystal Structure Of Schistosoma Mansoni Thioredoxi		2e-17
1xwa_A	111	Drospohila Thioredoxin, Oxidized, P41212 Length = 1		2e-17
2hxk_A	105	Crystal Structure Of S-Nitroso Thioredoxin Length =		2e-17
2vim_A	104	X-Ray Structure Of Fasciola Hepatica Thioredoxin Le		2e-17
2xbq_A	117	Crystal Structure Of Reduced Schistosoma Mansoni Th		2e-17
3f3r_A	109	Crystal Structure Of Yeast Thioredoxin1-Glutathione		3e-17
1xw9_A	106	Drospohila Thioredoxin, Oxidized, P21 Length = 106		4e-17
1m7t_A	107	Solution Structure And Dynamics Of The Human-Escher		8e-17
2hsy_A	104	Solution Structure Of Thioredoxin 2 From Saccharomy		1e-16
2fa4_A	111	Crystal Structure Of Oxidized Form From Saccharomyc		1e-16
2j23_A	121	Cross-Reactivity And Crystal Structure Of Malassezi		3e-16
2oe0_A	114	Crystal Structure Of Mitochondrial Thioredoxin 3 Fr		7e-16
4dss_B	112	Crystal Structure Of Peroxiredoxin Ahp1 From Saccha		2e-15
3pin_A	104	Crystal Structure Of Mxr1 From Saccharomyces Cerevi		2e-15
1gh2_A	107	Crystal Structure Of The Catalytic Domain Of A New		3e-13
2cvk_A	110	Crystal Structure Of Thermus Thermophilus Thioredox		1e-12
2yzu_A	109	Crystal Structure Of Oxidized Thioredoxin From Ther		1e-12
2o7k_A	107	S. Aureus Thioredoxin Length = 107		1e-12
2gzy_A	104	Solution Structures Of The Reduced Form Of Thioredo		2e-12
2yj7_A	106	Crystal Structure Of A Hyperstable Protein From The		2e-12
3hhv_A	110	The Crystal Structure Of The Thioredoxin A2 From Su		3e-12
2e0q_A	104	Crystal Structure Of K53e Thioredoxin From Sulfolob		5e-12
2wz9_A	153	Crystal Structure Of The Thioredoxin Domain Of Huma		6e-12
2l4q_A	116	Solution Structures Of Oxidized And Reduced Thiored		1e-11
2i1u_A	121	Mycobacterium Tuberculosis Thioredoxin C Length = 1		1e-11
2o85_A	107	S. Aureus Thioredoxin P31t Mutant Length = 107		1e-11
2o87_A	106	S. Aureus Thioredoxin P31s Mutant Length = 106		2e-11
2ipa_A	104	Solution Structure Of Trx-Arsc Complex Length = 104		2e-11
2voc_A	112	Thioredoxin A Active Site Mutants Form Mixed Disulf		2e-11
2diy_A	130	The Solution Structure Of The Thioredoxin Domain Of		3e-11
3die_A	106	Domain Swapping Of Staphylococcus Aureus Thioredoxi		4e-11
1fb0_A	105	Crystal Structure Of Thioredoxin M From Spinach Chl		8e-11
1gl8_A	104	Solution Structure Of Thioredoxin M From Spinach, O		9e-11
2i4a_A	107	Crystal Structure Of Thioredoxin From The Acidophil		1e-10
1nw2_A	105	The Crystal Structure Of The Mutant R82e Of Thiored		1e-10
1quw_A	105	Solution Structure Of The Thioredoxin From Bacillus		1e-10
3nof_A	118	Mycobacterium Tuberculosis Thioredoxin C C40s Mutan		2e-10
2o89_A	107	S. Aureus Thioredoxin P31tC32S MUTANT Length = 107		2e-10
1uvz_A	119	Structure Of Human Thioredoxin 2 Length = 119		5e-10
1rqm_A	105	Solution Structure Of The K18gR82E ALICYCLOBACILLUS		6e-10
1nsw_A	105	The Crystal Structure Of The K18g Mutant Of The Thi		6e-10
3tco_A	109	Crystallographic And Spectroscopic Characterization		1e-09
2puk_C	106	Crystal Srtucture Of The Binary Complex Between Fer		1e-09
1faa_A	124	Crystal Structure Of Thioredoxin F From Spinach Chl		3e-09
3hyp_A	141	Crystal Structure Of Bacteroides Fragilis Trxp_s105		3e-09
3hxs_A	141	Crystal Structure Of Bacteroides Fragilis Trxp Leng		3e-09
1r26_A	125	Crystal Structure Of Thioredoxin From Trypanosoma B		3e-09
1dby_A	107	Nmr Structures Of Chloroplast Thioredoxin M Ch2 Fro		5e-09
3dyr_A	111	Crystal Structure Of E. Coli Thioredoxin Mutant I76		6e-09
1f9m_A	112	Crystal Structure Of Thioredoxin F From Spinach Chl		8e-09
1v98_A	140	Crystal Structure Analysis Of Thioredoxin From Ther		1e-08
3p2a_A	148	Crystal Structure Of Thioredoxin 2 From Yersinia Pe		1e-08
2h71_A	108	Crystal Structure Of Thioredoxin Mutant D47e In Hex		1e-08
2h70_A	108	Crystal Structure Of Thioredoxin Mutant D9e In Hexa		2e-08
3dxb_A	222	Structure Of The Uhm Domain Of Puf60 Fused To Thior		2e-08
2h76_A	108	Crystal Structure Of Thioredoxin Mutant D10e In Hex		3e-08
2h75_A	108	Crystal Structure Of Thioredoxin Mutant D13e In Hex		3e-08
2h74_A	108	Crystal Structure Of Thioredoxin Mutant D2e In Hexa		3e-08
1zzy_A	108	Crystal Structure Of Thioredoxin Mutant L7v Length		3e-08
2h73_A	108	Crystal Structure Of Thioredoxin Mutant D43e In Hex		3e-08
2fch_A	108	Crystal Structure Of Thioredoxin Mutant G74s Length		3e-08
2trx_A	108	Crystal Structure Of Thioredoxin From Escherichia C		3e-08
1xob_A	108	Thioredoxin (Reduced Dithio Form), Nmr, 20 Structur		3e-08
2f51_A	118	Structure Of Trichomonas Vaginalis Thioredoxin Leng		3e-08
2eio_A	108	Design Of Disulfide-Linked Thioredoxin Dimers And M		4e-08
2eir_A	108	Design Of Disulfide-Linked Thioredoxin Dimers And M		4e-08
2h6y_A	108	Crystal Structure Of Thioredoxin Mutant E48d In Hex		4e-08
2kuc_A	130	Solution Structure Of A Putative Disulphide-Isomera		5e-08
2h72_A	108	Crystal Structure Of Thioredoxin Mutant E85d In Hex		5e-08
2dj2_A	120	The Solution Structure Of The Second Thioredoxin Do		5e-08
2eiq_A	108	Design Of Disulfide-linked Thioredoxin Dimers And M		6e-08
2tir_A	108	Crystal Structure Analysis Of A Mutant Escherichia		6e-08
2h6z_A	108	Crystal Structure Of Thioredoxin Mutant E44d In Hex		8e-08
3idv_A	241	Crystal Structure Of The A0a Fragment Of Erp72 Leng		1e-07
2l5l_A	136	Solution Structure Of Thioredoxin From Bacteroides		1e-07
2pu9_C	111	Crystal Srtucture Of The Binary Complex Between Fer		1e-07
2o8v_B	128	Paps Reductase In A Covalent Complex With Thioredox		2e-07
1srx_A	108	Three-Dimensional Structure Of Escherichia Coli Thi		3e-07
2fd3_A	108	Crystal Structure Of Thioredoxin Mutant P34h Length		3e-07
1f6m_C	108	Crystal Structure Of A Complex Between Thioredoxin		4e-07
1tho_A	109	Crystal Structure Of A Mutant Escherichia Coli Thio		7e-07
1keb_A	108	Crystal Structure Of Double Mutant M37l,P40s E.Coli		8e-07
1t00_A	112	The Structure Of Thioredoxin From S. Coelicolor Len		1e-06
3uvt_A	111	Crystal Structure Of The Third Catalytic Domain Of		2e-06
2diz_A	117	The Solution Structure Of The Third Thioredoxin Dom		5e-06
3d6i_A	112	Structure Of The Thioredoxin-Like Domain Of Yeast G		8e-06
3uj1_A	110	Crystal Structure Of The Third Thioredoxin Domain O		9e-06
1txx_A	108	Active-Site Variant Of E.Coli Thioredoxin Length =		1e-05
3gnj_A	111	The Crystal Structure Of A Thioredoxin-Related Prot		2e-05
1oaz_A	123	Ige Fv Spe7 Complexed With A Recombinant Thioredoxi		2e-05
3cxg_A	133	Crystal Structure Of Plasmodium Falciparum Thioredo		2e-05
3hdc_A	158	The Crystal Structure Of Thioredoxin Protein From G		3e-05
2dj1_A	140	The Solution Structure Of The First Thioredoxin Dom		3e-05
1zcp_A	108	Crystal Structure Of A Catalytic Site Mutant E. Col		3e-05
3gl3_A	152	Crystal Structure Of A Putative Thiol:disulfide Int		3e-05
2ppt_A	155	Crystal Structure Of Thioredoxin-2 Length = 155		4e-05
2lja_A	152	Solution Structure Of A Putative Thiol-Disulfide Ox		8e-05
1mek_A	120	Human Protein Disulfide Isomerase, Nmr, 40 Structur		8e-05
2alb_A	113	Nmr Structure Of The N-Terminal Domain A Of The Gly		3e-04
2dmm_A	142	The Solution Structure Of The Second Thioredoxin Do		3e-04
3f8u_A	481	TapasinERP57 HETERODIMER Length = 481		4e-04
2dj3_A	133	The Solution Structure Of The Third Thioredoxin Dom		4e-04
2dj0_A	137	The Solution Structure Of The Thioredoxin Domain Of		4e-04
3ul3_B	128	Structural Insights Into Thioredoxin-2: A Component		5e-04
1o73_A	144	Tryparedoxin From Trypanosoma Brucei Length = 144		7e-04
3or5_A	165	Crystal Structure Of Thiol:disulfide Interchange Pr		7e-04
1kng_A	156	Crystal Structure Of Ccmg Reducing Oxidoreductase A		7e-04
2r2j_A	382	Crystal Structure Of Human Erp44 Length = 382		8e-04

>pdb|3D21|A Chain A, Crystal Structure Of A Poplar Wild-Type Thioredoxin H, Pttrxh4 Length = 139

Iteration: 1
 Score =  220 bits (561), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 99/139 (71%), Positives = 119/139 (85%)
Query: 1   MGTCLSKRQHDEEDGEHPVEFAGGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGP 60
           MG CL+KR HD +D E  +E AGGNV L+TTK+ WDQK+SEAS++GKIV+ANFSA WCGP
Sbjct: 1   MGLCLAKRNHDADDDEPHIELAGGNVHLITTKERWDQKLSEASRDGKIVLANFSARWCGP 60
Query: 61  CRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANK 120
           C+ IAP++ ELSE YPSLMFL++DVDEL +FS SW+IKATPTFFFL+DGQQVDKLVGANK
Sbjct: 61  CKQIAPYYIELSENYPSLMFLVIDVDELSDFSASWEIKATPTFFFLRDGQQVDKLVGANK 120
Query: 121 PELQKKVAAAVDSVVPSQK 139
           PEL KK+ A +DS+ PS K
Sbjct: 121 PELHKKITAILDSLPPSDK 139

>pdb|3D22|A Chain A, Crystal Structure Of A Poplar Thioredoxin H Mutant, Pttrxh4c61s Length = 139

Iteration: 1
 Score =  219 bits (557), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 99/139 (71%), Positives = 118/139 (84%)
Query: 1   MGTCLSKRQHDEEDGEHPVEFAGGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGP 60
           MG CL+KR HD +D E  +E AGGNV L+TTK+ WDQK+SEAS++GKIV+ANFSA WCGP
Sbjct: 1   MGLCLAKRNHDADDDEPHIELAGGNVHLITTKERWDQKLSEASRDGKIVLANFSARWCGP 60
Query: 61  CRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANK 120
            R IAP++ ELSE YPSLMFL++DVDEL +FS SW+IKATPTFFFL+DGQQVDKLVGANK
Sbjct: 61  SRQIAPYYIELSENYPSLMFLVIDVDELSDFSASWEIKATPTFFFLRDGQQVDKLVGANK 120
Query: 121 PELQKKVAAAVDSVVPSQK 139
           PEL KK+ A +DS+ PS K
Sbjct: 121 PELHKKITAILDSLPPSDK 139

>pdb|1WMJ|A Chain A, Solution Structure Of Thioredoxin Type H From Oryza Sativa Length = 130

Iteration: 1
 Score =  117 bits (293), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 51/107 (47%), Positives = 76/107 (71%)
Query: 31  TKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVE 90
            KD +D +M++A + GK+VI +F+A+WCGPCR IAP F+E ++K+P  +FL VDVDEL E
Sbjct: 21  NKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAVFLKVDVDELKE 80
Query: 91  FSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKVAAAVDSVVPS 137
            +  ++++A PTF F+KDG + DK+VGA K +LQ  +   V +   S
Sbjct: 81  VAEKYNVEAMPTFLFIKDGAEADKVVGARKDDLQNTIVKHVGATAAS 127

>pdb|1XFL|A Chain A, Solution Structure Of Thioredoxin H1 From Arabidopsis Thaliana Length = 124

Iteration: 1
 Score =  115 bits (288), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 49/105 (46%), Positives = 77/105 (73%)
Query: 24  GNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLV 83
           G V    T + W++++ +A++   +V+ +F+A+WCGPCR IAPFF++L++K P+++FL V
Sbjct: 16  GQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPNVLFLKV 75
Query: 84  DVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKVA 128
           D DEL   ++ W I+A PTF FLK+G+ +DK+VGA K ELQ  +A
Sbjct: 76  DTDELKSVASDWAIQAMPTFMFLKEGKILDKVVGAKKDELQSTIA 120

>pdb|2VM1|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 1 Crystallized Using Ammonium Sulfate As Precipitant Length = 118

Iteration: 1
 Score =  113 bits (283), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 49/110 (44%), Positives = 76/110 (69%)
Query: 24  GNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLV 83
           G V    TK  +D  M+     GK+VI +F+A+WCGPCR+IAP F+E ++K+P  +FL V
Sbjct: 6   GAVIACHTKQEFDTHMANGKDTGKLVIIDFTASWCGPCRVIAPVFAEYAKKFPGAIFLKV 65
Query: 84  DVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKVAAAVDS 133
           DVDEL + + +++++A PTF F+KDG++VD +VG  K ++  K+ A + S
Sbjct: 66  DVDELKDVAEAYNVEAMPTFLFIKDGEKVDSVVGGRKDDIHTKIVALMGS 115

>pdb|1TI3|A Chain A, Solution Structure Of The Thioredoxin H1 From Poplar, A Cppc Active Site Variant Length = 113

Iteration: 1
 Score =  108 bits (269), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 49/105 (46%), Positives = 70/105 (66%)
Query: 24  GNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLV 83
           G V    T D W +   +     K+++ +F+A+WC PC+MIAP F+EL++K+P++ FL V
Sbjct: 4   GQVIACHTVDTWKEHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFPNVTFLKV 63
Query: 84  DVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKVA 128
           DVDEL   +  W+++A PTF FLKDG+ VDK VGA+K  L   VA
Sbjct: 64  DVDELKAVAEEWNVEAMPTFIFLKDGKLVDKTVGADKDGLPTLVA 108

>pdb|2VLT|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In The Oxidized State Length = 122

Iteration: 1
 Score =  101 bits (251), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 43/93 (46%), Positives = 68/93 (73%)
Query: 35  WDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTS 94
           W  ++ EA+   K+V+ +F+A+WCGPCR++AP F++L++K+P+ +FL VDVDEL   +  
Sbjct: 23  WTMQIEEANTAKKLVVIDFTASWCGPCRIMAPVFADLAKKFPNAVFLKVDVDELKPIAEQ 82
Query: 95  WDIKATPTFFFLKDGQQVDKLVGANKPELQKKV 127
           + ++A PTF F+K+G   D++VGA K EL  KV
Sbjct: 83  FSVEAMPTFLFMKEGDVKDRVVGAIKEELTAKV 115

>pdb|1TRS|A Chain A, The High-Resolution Three-Dimensional Solution Structures Of The Oxidized And Reduced States Of Human Thioredoxin Length = 105

Iteration: 1
 Score = 99.0 bits (245), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 43/81 (53%), Positives = 61/81 (75%)
Query: 47  KIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFL 106
           K+V+ +FSATWCGPC+MI PFF  LSEKY +++FL VDVD+  + ++  ++KATPTF F 
Sbjct: 21  KLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDAQDVASEAEVKATPTFQFF 80
Query: 107 KDGQQVDKLVGANKPELQKKV 127
           K GQ+V +  GANK +L+  +
Sbjct: 81  KKGQKVGEFSGANKEKLEATI 101

>pdb|2IWT|A Chain A, Thioredoxin H2 (Hvtrxh2) In A Mixed Disulfide Complex With The Target Protein Basi Length = 125

Iteration: 1
 Score = 97.4 bits (241), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 42/93 (45%), Positives = 67/93 (72%)
Query: 35  WDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTS 94
           W  ++ EA+   K+V+ +F+A+WCGP R++AP F++L++K+P+ +FL VDVDEL   +  
Sbjct: 26  WTMQIEEANTAKKLVVIDFTASWCGPSRIMAPVFADLAKKFPNAVFLKVDVDELKPIAEQ 85
Query: 95  WDIKATPTFFFLKDGQQVDKLVGANKPELQKKV 127
           + ++A PTF F+K+G   D++VGA K EL  KV
Sbjct: 86  FSVEAMPTFLFMKEGDVKDRVVGAIKEELTAKV 118

>pdb|3TRX|A Chain A, High-Resolution Three-Dimensional Structure Of Reduced Recombinant Human Thioredoxin In Solution Length = 105

Iteration: 1
 Score = 97.4 bits (241), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 43/85 (50%), Positives = 61/85 (71%)
Query: 47  KIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFL 106
           K+V+ +FSATWCGPC+MI PFF  LSEKY +++FL VDVD+  + ++  ++K TPTF F 
Sbjct: 21  KLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASECEVKCTPTFQFF 80
Query: 107 KDGQQVDKLVGANKPELQKKVAAAV 131
           K GQ+V +  GANK +L+  +   V
Sbjct: 81  KKGQKVGEFSGANKEKLEATINELV 105

>pdb|1MDI|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide Intermediate Between Mutant Human Thioredoxin And A 13 Residue Peptide Comprising Its Target Site In Human Nfkb Length = 105

Iteration: 1
 Score = 95.9 bits (237), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 42/81 (51%), Positives = 60/81 (74%)
Query: 47  KIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFL 106
           K+V+ +FSATWCGP +MI PFF  LSEKY +++FL VDVD+  + ++  ++KATPTF F 
Sbjct: 21  KLVVVDFSATWCGPAKMIKPFFHSLSEKYSNVIFLEVDVDDAQDVASEAEVKATPTFQFF 80
Query: 107 KDGQQVDKLVGANKPELQKKV 127
           K GQ+V +  GANK +L+  +
Sbjct: 81  KKGQKVGEFSGANKEKLEATI 101

>pdb|2HSH|A Chain A, Crystal Structure Of C73s Mutant Of Human Thioredoxin-1 Oxidized With H2o2 Length = 105

Iteration: 1
 Score = 95.5 bits (236), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 42/85 (49%), Positives = 61/85 (71%)
Query: 47  KIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFL 106
           K+V+ +FSATWCGPC+MI PFF  LSEKY +++FL VDVD+  + ++  ++K+ PTF F 
Sbjct: 21  KLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASECEVKSMPTFQFF 80
Query: 107 KDGQQVDKLVGANKPELQKKVAAAV 131
           K GQ+V +  GANK +L+  +   V
Sbjct: 81  KKGQKVGEFSGANKEKLEATINELV 105

>pdb|3M9J|A Chain A, Crystal Structure Of Human Thioredoxin C6973S DOUBLE MUTANT, REDUCED Form Length = 105

Iteration: 1
 Score = 95.1 bits (235), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 42/85 (49%), Positives = 61/85 (71%)
Query: 47  KIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFL 106
           K+V+ +FSATWCGPC+MI PFF  LSEKY +++FL VDVD+  + ++  ++K+ PTF F 
Sbjct: 21  KLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASESEVKSMPTFQFF 80
Query: 107 KDGQQVDKLVGANKPELQKKVAAAV 131
           K GQ+V +  GANK +L+  +   V
Sbjct: 81  KKGQKVGEFSGANKEKLEATINELV 105

>pdb|2IFQ|B Chain B, Crystal Structure Of S-Nitroso Thioredoxin Length = 105

Iteration: 1
 Score = 95.1 bits (235), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 42/85 (49%), Positives = 60/85 (70%)
Query: 47  KIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFL 106
           K+V+ +FSATWCGPC+MI PFF  LSEKY +++FL VDVD+  + ++  ++K  PTF F 
Sbjct: 21  KLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASECEVKCMPTFQFF 80
Query: 107 KDGQQVDKLVGANKPELQKKVAAAV 131
           K GQ+V +  GANK +L+  +   V
Sbjct: 81  KKGQKVGEFSGANKEKLEATINELV 105

>pdb|2IFQ|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin Length = 105

Iteration: 1
 Score = 95.1 bits (235), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 42/85 (49%), Positives = 60/85 (70%)
Query: 47  KIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFL 106
           K+V+ +FSATWCGPC+MI PFF  LSEKY +++FL VDVD+  + ++  ++K  PTF F 
Sbjct: 21  KLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASEXEVKCMPTFQFF 80
Query: 107 KDGQQVDKLVGANKPELQKKVAAAV 131
           K GQ+V +  GANK +L+  +   V
Sbjct: 81  KKGQKVGEFSGANKEKLEATINELV 105

>pdb|3QFA|C Chain C, Crystal Structure Of The Human Thioredoxin Reductase-Thioredoxin Complex Length = 116

Iteration: 1
 Score = 94.0 bits (232), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 44/104 (42%), Positives = 69/104 (66%), Gaps = 2/104 (1%)
Query: 24  GNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLV 83
           G+V  + +K  + + +  A    K+V+ +FSATWCGP +MI PFF  LSEKY +++FL V
Sbjct: 11  GSVKQIESKTAFQEALDAAGD--KLVVVDFSATWCGPSKMIKPFFHSLSEKYSNVIFLEV 68
Query: 84  DVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKV 127
           DVD+  + ++  ++K+ PTF F K GQ+V +  GANK +L+  +
Sbjct: 69  DVDDCQDVASECEVKSMPTFQFFKKGQKVGEFSGANKEKLEATI 112

>pdb|1AIU|A Chain A, Human Thioredoxin (D60n Mutant, Reduced Form) Length = 105

Iteration: 1
 Score = 93.6 bits (231), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 41/85 (48%), Positives = 60/85 (70%)
Query: 47  KIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFL 106
           K+V+ +FSATWCGPC+MI PFF  LSEKY +++FL VDV++  + ++  ++K  PTF F 
Sbjct: 21  KLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVNDCQDVASECEVKCMPTFQFF 80
Query: 107 KDGQQVDKLVGANKPELQKKVAAAV 131
           K GQ+V +  GANK +L+  +   V
Sbjct: 81  KKGQKVGEFSGANKEKLEATINELV 105

>pdb|3KD0|A Chain A, Human Thioredoxin C35s,C62s,C69s,C73s Mutant Showing Cadmium Chloride Bound To The Active Site Length = 105

Iteration: 1
 Score = 91.3 bits (225), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 40/81 (49%), Positives = 59/81 (72%)
Query: 47  KIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFL 106
           K+V+ +FSATWCGP +MI PFF  LSEKY +++FL VDVD+  + ++  ++K+ PTF F 
Sbjct: 21  KLVVVDFSATWCGPSKMIKPFFHSLSEKYSNVIFLEVDVDDSQDVASESEVKSMPTFQFF 80
Query: 107 KDGQQVDKLVGANKPELQKKV 127
           K GQ+V +  GANK +L+  +
Sbjct: 81  KKGQKVGEFSGANKEKLEATI 101

>pdb|3E3E|A Chain A, Human Thioredoxin Double Mutant C35s,C73r Length = 105

Iteration: 1
 Score = 90.9 bits (224), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 41/85 (48%), Positives = 59/85 (69%)
Query: 47  KIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFL 106
           K+V+ +FSATWCGP +MI PFF  LSEKY +++FL VDVD+  + ++  ++K  PTF F 
Sbjct: 21  KLVVVDFSATWCGPSKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASECEVKRMPTFQFF 80
Query: 107 KDGQQVDKLVGANKPELQKKVAAAV 131
           K GQ+V +  GANK +L+  +   V
Sbjct: 81  KKGQKVGEFSGANKEKLEATINELV 105

>pdb|2I9H|A Chain A, Nmr Solution Structure Of The Reduced Form Of Thioredoxin 1 From Yeast (Trx1) Length = 103

Iteration: 1
 Score = 87.4 bits (215), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 38/88 (43%), Positives = 58/88 (65%)
Query: 42  ASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATP 101
           A  + K+V+ +F ATWCGPC+MIAP   + SE+YP   F  +DVDEL + +   ++ A P
Sbjct: 14  AIAQDKLVVVDFYATWCGPCKMIAPMIEKFSEQYPQADFYKLDVDELGDVAQKNEVSAMP 73
Query: 102 TFFFLKDGQQVDKLVGANKPELQKKVAA 129
           T    K+G++V K+VGAN   +++ +AA
Sbjct: 74  TLLLFKNGKEVAKVVGANPAAIKQAIAA 101

>pdb|3F3Q|A Chain A, Crystal Structure Of The Oxidised Form Of Thioredoxin 1 From Saccharomyces Cerevisiae Length = 109

Iteration: 1
 Score = 87.4 bits (215), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 38/88 (43%), Positives = 58/88 (65%)
Query: 42  ASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATP 101
           A  + K+V+ +F ATWCGPC+MIAP   + SE+YP   F  +DVDEL + +   ++ A P
Sbjct: 20  AIAQDKLVVVDFYATWCGPCKMIAPMIEKFSEQYPQADFYKLDVDELGDVAQKNEVSAMP 79
Query: 102 TFFFLKDGQQVDKLVGANKPELQKKVAA 129
           T    K+G++V K+VGAN   +++ +AA
Sbjct: 80  TLLLFKNGKEVAKVVGANPAAIKQAIAA 107

>pdb|1ERW|A Chain A, Human Thioredoxin Double Mutant With Cys 32 Replaced By Ser And Cys 35 Replaced By Ser Length = 105

Iteration: 1
 Score = 87.0 bits (214), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 40/85 (47%), Positives = 58/85 (68%)
Query: 47  KIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFL 106
           K+V+ +FSATW GP +MI PFF  LSEKY +++FL VDVD+  + ++  ++K  PTF F 
Sbjct: 21  KLVVVDFSATWSGPSKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASECEVKCMPTFQFF 80
Query: 107 KDGQQVDKLVGANKPELQKKVAAAV 131
           K GQ+V +  GANK +L+  +   V
Sbjct: 81  KKGQKVGEFSGANKEKLEATINELV 105

>pdb|1EP7|A Chain A, Crystal Structure Of Wt Thioredoxin H From Chlamydomonas Reinhardtii Length = 112

Iteration: 1
 Score = 86.7 bits (213), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 46/107 (42%), Positives = 70/107 (65%), Gaps = 1/107 (0%)
Query: 23  GGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS-LMFL 81
           GG+V ++ +K  WD ++++  +E K ++ +F+ATWCGPC+MIAP F  LS  Y   ++FL
Sbjct: 1   GGSVIVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFL 60
Query: 82  LVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKVA 128
            VDVD +   + +  I A PTF   KDG + D LVGA++ +L+  VA
Sbjct: 61  KVDVDAVAAVAEAAGITAMPTFHVYKDGVKADDLVGASQDKLKALVA 107

>pdb|3ZZX|A Chain A, Crystallographic Structure Of Thioredoxin From Litopenaeus Vannamei Length = 105

Iteration: 1
 Score = 85.9 bits (211), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 42/98 (42%), Positives = 63/98 (64%), Gaps = 2/98 (2%)
Query: 26  VSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDV 85
           V  V  ++ + ++++EA    K+V+ +F ATWCGPC+MIAP   ELS+    ++FL VDV
Sbjct: 2   VYQVKDQEDFTKQLNEAG--NKLVVIDFYATWCGPCKMIAPKLEELSQSMSDVVFLKVDV 59
Query: 86  DELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPEL 123
           DE  + +    I   PTF F+K+GQ++D L GAN  +L
Sbjct: 60  DECEDIAQDNQIACMPTFLFMKNGQKLDSLSGANYDKL 97

>pdb|1EP8|A Chain A, Crystal Structure Of A Mutated Thioredoxin, D30a, From Chlamydomonas Reinhardtii Length = 112

Iteration: 1
 Score = 85.5 bits (210), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 46/107 (42%), Positives = 69/107 (64%), Gaps = 1/107 (0%)
Query: 23  GGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS-LMFL 81
           GG+V ++ +K  WD ++++  +E K ++  F+ATWCGPC+MIAP F  LS  Y   ++FL
Sbjct: 1   GGSVIVIDSKAAWDAQLAKGKEEHKPIVVAFTATWCGPCKMIAPLFETLSNDYAGKVIFL 60
Query: 82  LVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKVA 128
            VDVD +   + +  I A PTF   KDG + D LVGA++ +L+  VA
Sbjct: 61  KVDVDAVAAVAEAAGITAMPTFHVYKDGVKADDLVGASQDKLKALVA 107

>pdb|1SYR|A Chain A, Initial Structural Analysis Of Plasmodium Falciparum Thioredoxin Length = 112

Iteration: 1
 Score = 85.1 bits (209), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 41/102 (40%), Positives = 65/102 (63%), Gaps = 4/102 (3%)
Query: 26  VSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDV 85
           V +VT++  +D  +S+     ++VI +F A WCGPC+ IAPF+ E S+ Y  ++F+ VDV
Sbjct: 10  VKIVTSQAEFDSIISQ----NELVIVDFFAEWCGPCKRIAPFYEECSKTYTKMVFIKVDV 65
Query: 86  DELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKV 127
           DE+ E +   +I + PTF   K+G  VD L+GAN   L++ +
Sbjct: 66  DEVSEVTEKENITSMPTFKVYKNGSSVDTLLGANDSALKQLI 107

>pdb|2XBI|A Chain A, Crystal Structure Of Schistosoma Mansoni Thioredoxin At 1.6 Angstrom Length = 108

Iteration: 1
 Score = 84.7 bits (208), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 38/75 (50%), Positives = 56/75 (74%), Gaps = 1/75 (1%)
Query: 45  EGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFF 104
           + K+V+ +F ATWCGPC+ IAP F ELSEKY ++ F+ VDVD+L E +  ++I A PTF 
Sbjct: 23  KNKLVVVDFFATWCGPCKTIAPLFKELSEKYDAI-FVKVDVDKLEETARKYNISAMPTFI 81
Query: 105 FLKDGQQVDKLVGAN 119
            +K+G++V  +VGA+
Sbjct: 82  AIKNGEKVGDVVGAS 96

>pdb|1XWA|A Chain A, Drospohila Thioredoxin, Oxidized, P41212 Length = 111

Iteration: 1
 Score = 84.3 bits (207), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 44/111 (39%), Positives = 70/111 (63%), Gaps = 3/111 (2%)
Query: 22  AGGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP-SLMF 80
           A   V  V  K   D ++++AS  GK+V+ +F ATWCGPC+MI+P   ELS ++  +++ 
Sbjct: 3   AAAMVYQVKDKADLDGQLTKAS--GKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVV 60
Query: 81  LLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKVAAAV 131
           L VDVDE  + +  ++I + PTF FLK+G +V++  GAN   L+  + A +
Sbjct: 61  LKVDVDECEDIAMEYNISSMPTFVFLKNGVKVEEFAGANAKRLEDVIKANI 111

>pdb|2HXK|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin Length = 105

Iteration: 1
 Score = 84.3 bits (207), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 41/81 (50%), Positives = 59/81 (72%)
Query: 47  KIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFL 106
           K+V+ +FSATWCGPC+MI PFF  LSEKY +++FL VDVD+  + ++  ++K  PTF F 
Sbjct: 21  KLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDXQDVASEXEVKCMPTFQFF 80
Query: 107 KDGQQVDKLVGANKPELQKKV 127
           K GQ+V +  GANK +L+  +
Sbjct: 81  KKGQKVGEFSGANKEKLEATI 101

>pdb|2VIM|A Chain A, X-Ray Structure Of Fasciola Hepatica Thioredoxin Length = 104

Iteration: 1
 Score = 84.0 bits (206), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 39/100 (39%), Positives = 65/100 (65%), Gaps = 3/100 (3%)
Query: 28  LVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDE 87
           L T  D+  +K+   +K G++++ +F A WCGPCR IAP    L+++ P + F  VDVD+
Sbjct: 4   LATAADL--EKLINENK-GRLIVVDFFAQWCGPCRNIAPKVEALAKEIPEVEFAKVDVDQ 60
Query: 88  LVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKV 127
             E +  + + A PTF F+KDG++VD+  GAN+ +L++ +
Sbjct: 61  NEEAAAKYSVTAMPTFVFIKDGKEVDRFSGANETKLRETI 100

>pdb|2XBQ|A Chain A, Crystal Structure Of Reduced Schistosoma Mansoni Thioredoxin Pre-Protein At 1.7 Angstrom Length = 117

Iteration: 1
 Score = 84.0 bits (206), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 38/75 (50%), Positives = 56/75 (74%), Gaps = 1/75 (1%)
Query: 45  EGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFF 104
           + K+V+ +F ATWCGPC+ IAP F ELSEKY ++ F+ VDVD+L E +  ++I A PTF 
Sbjct: 32  KNKLVVVDFFATWCGPCKTIAPLFKELSEKYDAI-FVKVDVDKLEETARKYNISAMPTFI 90
Query: 105 FLKDGQQVDKLVGAN 119
            +K+G++V  +VGA+
Sbjct: 91  AIKNGEKVGDVVGAS 105

>pdb|3F3R|A Chain A, Crystal Structure Of Yeast Thioredoxin1-Glutathione Mixed Disulfide Complex Length = 109

Iteration: 1
 Score = 83.6 bits (205), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 37/88 (42%), Positives = 57/88 (64%)
Query: 42  ASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATP 101
           A  + K+V+ +F ATWCGP +MIAP   + SE+YP   F  +DVDEL + +   ++ A P
Sbjct: 20  AIAQDKLVVVDFYATWCGPSKMIAPMIEKFSEQYPQADFYKLDVDELGDVAQKNEVSAMP 79
Query: 102 TFFFLKDGQQVDKLVGANKPELQKKVAA 129
           T    K+G++V K+VGAN   +++ +AA
Sbjct: 80  TLLLFKNGKEVAKVVGANPAAIKQAIAA 107

>pdb|1XW9|A Chain A, Drospohila Thioredoxin, Oxidized, P21 Length = 106

Iteration: 1
 Score = 83.6 bits (205), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 40/97 (41%), Positives = 66/97 (68%), Gaps = 3/97 (3%)
Query: 36  DQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP-SLMFLLVDVDELVEFSTS 94
           D ++++AS  GK+V+ +F ATWCGPC+MI+P   ELS ++  +++ L VDVDE  + +  
Sbjct: 12  DGQLTKAS--GKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDECEDIAME 69
Query: 95  WDIKATPTFFFLKDGQQVDKLVGANKPELQKKVAAAV 131
           ++I + PTF FLK+G +V++  GAN   L+  + A +
Sbjct: 70  YNISSMPTFVFLKNGVKVEEFAGANAKRLEDVIKANI 106

>pdb|1M7T|A Chain A, Solution Structure And Dynamics Of The Human-Escherichia Coli Thioredoxin Chimera: Insights Into Thermodynamic Stability Length = 107

Iteration: 1
 Score = 82.4 bits (202), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 35/72 (48%), Positives = 49/72 (68%)
Query: 47  KIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFL 106
           K+V+ +FSATWCGPC+MI PFF  LSEKY +++FL VDVD+  + +  + I+  PT    
Sbjct: 21  KLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDAQDVAPKYGIRGIPTLLLF 80
Query: 107 KDGQQVDKLVGA 118
           K+G+     VGA
Sbjct: 81  KNGEVAATKVGA 92

>pdb|2HSY|A Chain A, Solution Structure Of Thioredoxin 2 From Saccharomyces Cerevisiae Length = 104

Iteration: 1
 Score = 81.6 bits (200), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 33/85 (38%), Positives = 56/85 (65%)
Query: 47  KIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFL 106
           K+V+ +F ATWCGPC+MIAP   + +E+Y    F  +DVDE+ + +   ++ + PT  F 
Sbjct: 20  KLVVVDFFATWCGPCKMIAPMIEKFAEQYSDAAFYKLDVDEVSDVAQKAEVSSMPTLIFY 79
Query: 107 KDGQQVDKLVGANKPELQKKVAAAV 131
           K G++V ++VGAN   +++ +A+ V
Sbjct: 80  KGGKEVTRVVGANPAAIKQAIASNV 104

>pdb|2FA4|A Chain A, Crystal Structure Of Oxidized Form From Saccharomyces Cerevisiae Length = 111

Iteration: 1
 Score = 81.6 bits (200), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 33/85 (38%), Positives = 56/85 (65%)
Query: 47  KIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFL 106
           K+V+ +F ATWCGPC+MIAP   + +E+Y    F  +DVDE+ + +   ++ + PT  F 
Sbjct: 27  KLVVVDFFATWCGPCKMIAPMIEKFAEQYSDAAFYKLDVDEVSDVAQKAEVSSMPTLIFY 86
Query: 107 KDGQQVDKLVGANKPELQKKVAAAV 131
           K G++V ++VGAN   +++ +A+ V
Sbjct: 87  KGGKEVTRVVGANPAAIKQAIASNV 111

>pdb|2J23|A Chain A, Cross-Reactivity And Crystal Structure Of Malassezia Sympodialis Thioredoxin (Mala S 13), A Member Of A New Pan- Allergen Family Length = 121

Iteration: 1
 Score = 80.5 bits (197), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 39/106 (36%), Positives = 65/106 (61%), Gaps = 6/106 (5%)
Query: 24  GNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS--LMFL 81
           G+V ++++ D    +  + +   K+V+ +F ATWCGPC+MI P F ++S+      + F 
Sbjct: 15  GSVQVISSYD----QFKQVTGGDKVVVIDFWATWCGPCKMIGPVFEKISDTPAGDKVGFY 70
Query: 82  LVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKV 127
            VDVDE  + +    I+A PTF F K+GQ++D +VGA+  +LQ  +
Sbjct: 71  KVDVDEQSQIAQEVGIRAMPTFVFFKNGQKIDTVVGADPSKLQAAI 116

>pdb|2OE0|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From Saccharomyces Cerevisiae Length = 114

Iteration: 1
 Score = 79.0 bits (193), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 33/84 (39%), Positives = 53/84 (63%)
Query: 44  KEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTF 103
           K+   ++ +F ATWCGPC+M+ P  ++L + YP + F+  DVDE  + +   ++ A PTF
Sbjct: 28  KQNDKLVIDFYATWCGPCKMMQPHLTKLIQAYPDVRFVKCDVDESPDIAKECEVTAMPTF 87
Query: 104 FFLKDGQQVDKLVGANKPELQKKV 127
              KDGQ + K++GAN   L+K +
Sbjct: 88  VLGKDGQLIGKIIGANPTALEKGI 111

>pdb|4DSS|B Chain B, Crystal Structure Of Peroxiredoxin Ahp1 From Saccharomyces Cerevisiae In Complex With Thioredoxin Trx2 Length = 112

Iteration: 1
 Score = 77.8 bits (190), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 55/85 (64%)
Query: 47  KIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFL 106
           K+V+ +F ATWCGP +MIAP   + +E+Y    F  +DVDE+ + +   ++ + PT  F 
Sbjct: 28  KLVVVDFFATWCGPSKMIAPMIEKFAEQYSDAAFYKLDVDEVSDVAQKAEVSSMPTLIFY 87
Query: 107 KDGQQVDKLVGANKPELQKKVAAAV 131
           K G++V ++VGAN   +++ +A+ V
Sbjct: 88  KGGKEVTRVVGANPAAIKQAIASNV 112

>pdb|3PIN|A Chain A, Crystal Structure Of Mxr1 From Saccharomyces Cerevisiae In Complex With Trx2 Length = 104

Iteration: 1
 Score = 77.8 bits (190), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 55/85 (64%)
Query: 47  KIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFL 106
           K+V+ +F ATWCGP +MIAP   + +E+Y    F  +DVDE+ + +   ++ + PT  F 
Sbjct: 20  KLVVVDFFATWCGPSKMIAPMIEKFAEQYSDAAFYKLDVDEVSDVAQKAEVSSMPTLIFY 79
Query: 107 KDGQQVDKLVGANKPELQKKVAAAV 131
           K G++V ++VGAN   +++ +A+ V
Sbjct: 80  KGGKEVTRVVGANPAAIKQAIASNV 104

>pdb|1GH2|A Chain A, Crystal Structure Of The Catalytic Domain Of A New Human Thioredoxin-Like Protein Length = 107

Iteration: 1
 Score = 70.1 bits (170), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 31/81 (38%), Positives = 50/81 (61%)
Query: 47  KIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFL 106
           ++ +  F+   CGPC  IAP FS +S KYP  +FL VDV +    + + +I ATPTF F 
Sbjct: 22  RLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQCQGTAATNNISATPTFQFF 81
Query: 107 KDGQQVDKLVGANKPELQKKV 127
           ++  ++D+  GA+   L++K+
Sbjct: 82  RNKVRIDQYQGADAVGLEEKI 102

>pdb|2CVK|A Chain A, Crystal Structure Of Thermus Thermophilus Thioredoxin Length = 110

Iteration: 1
 Score = 68.6 bits (166), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 1/88 (1%)
Query: 33  DIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVDELVEF 91
           ++ DQ   E   +  +V+ +F A WC PCR IAP   E++++Y   L+   +DVDE  + 
Sbjct: 6   EVTDQNFDETLGQHPLVLVDFWAEWCAPCRXIAPILEEIAKEYEGKLLVAKLDVDENPKT 65
Query: 92  STSWDIKATPTFFFLKDGQQVDKLVGAN 119
           +  + + + PT    KDGQ V+ LVGA 
Sbjct: 66  AXRYRVXSIPTVILFKDGQPVEVLVGAQ 93

>pdb|2YZU|A Chain A, Crystal Structure Of Oxidized Thioredoxin From Thermus Thermophilus Hb8 Length = 109

Iteration: 1
 Score = 68.6 bits (166), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 1/88 (1%)
Query: 33  DIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVDELVEF 91
           ++ DQ   E   +  +V+ +F A WC PCR IAP   E++++Y   L+   +DVDE  + 
Sbjct: 5   EVTDQNFDETLGQHPLVLVDFWAEWCAPCRXIAPILEEIAKEYEGKLLVAKLDVDENPKT 64
Query: 92  STSWDIKATPTFFFLKDGQQVDKLVGAN 119
           +  + + + PT    KDGQ V+ LVGA 
Sbjct: 65  AXRYRVXSIPTVILFKDGQPVEVLVGAQ 92

>pdb|2O7K|A Chain A, S. Aureus Thioredoxin Length = 107

Iteration: 1
 Score = 68.2 bits (165), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 37/97 (38%), Positives = 56/97 (57%), Gaps = 7/97 (7%)
Query: 23  GGNVSLVTTKDI-WDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFL 81
           G ++++V   D  +D K+     E  + + +F ATWCGPC+MIAP   EL+  Y     +
Sbjct: 1   GSHMAIVKVTDADFDSKV-----ESGVQLVDFWATWCGPCKMIAPVLEELAADYEGKADI 55
Query: 82  L-VDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVG 117
           L +DVDE    +  +++ + PT    KDGQ VDK+VG
Sbjct: 56  LKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVG 92

>pdb|2GZY|A Chain A, Solution Structures Of The Reduced Form Of Thioredoxin From Bacillus Subtilis Length = 104

Iteration: 1
 Score = 68.2 bits (165), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 35/83 (42%), Positives = 50/83 (60%), Gaps = 2/83 (2%)
Query: 36  DQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKY-PSLMFLLVDVDELVEFSTS 94
           DQ  S  + EG +V+A+F A WCGPC+MIAP   EL ++    L  + +DVDE  E +  
Sbjct: 8   DQSFSAETSEG-VVLADFWAPWCGPCKMIAPVLEELDQEMGDKLKIVKIDVDENQETAGK 66
Query: 95  WDIKATPTFFFLKDGQQVDKLVG 117
           + + + PT   LKDG+ V+  VG
Sbjct: 67  YGVMSIPTLLVLKDGEVVETSVG 89

>pdb|2YJ7|A Chain A, Crystal Structure Of A Hyperstable Protein From The Precambrian Period Length = 106

Iteration: 1
 Score = 67.8 bits (164), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 37/88 (42%), Positives = 52/88 (59%), Gaps = 1/88 (1%)
Query: 40  SEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVDELVEFSTSWDIK 98
            E  K  K V+ +F A WCGPCRMIAP   EL+++Y   +  + V+VDE    +  + I+
Sbjct: 13  QEVLKSDKPVLVDFWAPWCGPCRMIAPIIEELAKEYEGKVKVVKVNVDENPNTAAQYGIR 72
Query: 99  ATPTFFFLKDGQQVDKLVGANKPELQKK 126
           + PT    K+GQ VD+LVGA   E  K+
Sbjct: 73  SIPTLLLFKNGQVVDRLVGAQPKEALKE 100

>pdb|3HHV|A Chain A, The Crystal Structure Of The Thioredoxin A2 From Sulfolobus Solfataricus Length = 110

Iteration: 1
 Score = 67.0 bits (162), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 50/88 (56%)
Query: 31  TKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVE 90
            K +  +   E   + KIV+ +F A WC PC ++AP   EL+  YP + F  ++ +E  +
Sbjct: 8   VKHLNSKNFDEFITKNKIVVVDFWAEWCAPCLILAPVIEELANDYPQVAFGKLNTEESQD 67
Query: 91  FSTSWDIKATPTFFFLKDGQQVDKLVGA 118
            +  + I + PT  F K+G+ VD+++GA
Sbjct: 68  IAMRYGIMSLPTIMFFKNGELVDQILGA 95

>pdb|2E0Q|A Chain A, Crystal Structure Of K53e Thioredoxin From Sulfolobus Tokodaii Strain7 Length = 104

Iteration: 1
 Score = 66.2 bits (160), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 45/72 (62%)
Query: 47  KIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFL 106
           +I + +F A WC PC ++AP   EL+E YP + F  ++ DE  + +  + + + PT  F 
Sbjct: 17  EIAVVDFWAEWCAPCLILAPIIEELAEDYPQVGFGKLNSDENPDIAARYGVMSLPTVIFF 76
Query: 107 KDGQQVDKLVGA 118
           KDG+ VD+++GA
Sbjct: 77  KDGEPVDEIIGA 88

>pdb|2WZ9|A Chain A, Crystal Structure Of The Thioredoxin Domain Of Human Txnl2 Length = 153

Iteration: 1
 Score = 65.9 bits (159), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 58/98 (59%), Gaps = 2/98 (2%)
Query: 44  KEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTF 103
           K   +++ +F A W   C  +    +EL+++ P + F+ ++ + + E S  ++I + PTF
Sbjct: 30  KAKSLLVVHFWAPWAPQCAQMNEVMAELAKELPQVSFVKLEAEGVPEVSEKYEISSVPTF 89
Query: 104 FFLKDGQQVDKLVGANKPELQKKVA--AAVDSVVPSQK 139
            F K+ Q++D+L GA+ PEL KKV   A+  S +PS K
Sbjct: 90  LFFKNSQKIDRLDGAHAPELTKKVQRHASSGSFLPSAK 127

>pdb|2L4Q|A Chain A, Solution Structures Of Oxidized And Reduced Thioredoxin C From M. Tb Length = 116

Iteration: 1
 Score = 65.1 bits (157), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 46  GKIVIANFSATWCGPCRMIAPFFSEL-SEKYPSLMFLLVDVDELVEFSTSWDIKATPTFF 104
            K V+ +F ATWCGPC+M+AP   E+ +E+   L    +DVD   E + ++ + + PT  
Sbjct: 25  NKPVLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDVDTNPETARNFQVVSIPTLI 84
Query: 105 FLKDGQQVDKLVGA 118
             KDGQ V ++VGA
Sbjct: 85  LFKDGQPVKRIVGA 98

>pdb|2I1U|A Chain A, Mycobacterium Tuberculosis Thioredoxin C Length = 121

Iteration: 1
 Score = 65.1 bits (157), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 46  GKIVIANFSATWCGPCRMIAPFFSEL-SEKYPSLMFLLVDVDELVEFSTSWDIKATPTFF 104
            K V+ +F ATWCGPC+M+AP   E+ +E+   L    +DVD   E + ++ + + PT  
Sbjct: 30  NKPVLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDVDTNPETARNFQVVSIPTLI 89
Query: 105 FLKDGQQVDKLVGA 118
             KDGQ V ++VGA
Sbjct: 90  LFKDGQPVKRIVGA 103

>pdb|2O85|A Chain A, S. Aureus Thioredoxin P31t Mutant Length = 107

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 36/97 (37%), Positives = 55/97 (56%), Gaps = 7/97 (7%)
Query: 23  GGNVSLVTTKDI-WDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFL 81
           G ++++V   D  +D K+     E  + + +F ATWCG C+MIAP   EL+  Y     +
Sbjct: 1   GSHMAIVKVTDADFDSKV-----ESGVQLVDFWATWCGTCKMIAPVLEELAADYEGKADI 55
Query: 82  L-VDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVG 117
           L +DVDE    +  +++ + PT    KDGQ VDK+VG
Sbjct: 56  LKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVG 92

>pdb|2O87|A Chain A, S. Aureus Thioredoxin P31s Mutant Length = 106

Iteration: 1
 Score = 64.7 bits (156), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 45  EGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLL-VDVDELVEFSTSWDIKATPTF 103
           E  + + +F ATWCG C+MIAP   EL+  Y     +L +DVDE    +  +++ + PT 
Sbjct: 18  ESGVQLVDFWATWCGSCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTL 77
Query: 104 FFLKDGQQVDKLVG 117
              KDGQ VDK+VG
Sbjct: 78  IVFKDGQPVDKVVG 91

>pdb|2IPA|A Chain A, Solution Structure Of Trx-Arsc Complex Length = 104

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 34/83 (40%), Positives = 49/83 (59%), Gaps = 2/83 (2%)
Query: 36  DQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKY-PSLMFLLVDVDELVEFSTS 94
           DQ  S  + EG +V+A+F A WCGP +MIAP   EL ++    L  + +DVDE  E +  
Sbjct: 8   DQSFSAETSEG-VVLADFWAPWCGPSKMIAPVLEELDQEMGDKLKIVKIDVDENQETAGK 66
Query: 95  WDIKATPTFFFLKDGQQVDKLVG 117
           + + + PT   LKDG+ V+  VG
Sbjct: 67  YGVMSIPTLLVLKDGEVVETSVG 89

>pdb|2VOC|A Chain A, Thioredoxin A Active Site Mutants Form Mixed Disulfide Dimers That Resemble Enzyme-substrate Reaction Intermediate Length = 112

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 34/83 (40%), Positives = 49/83 (59%), Gaps = 2/83 (2%)
Query: 36  DQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKY-PSLMFLLVDVDELVEFSTS 94
           DQ  S  + EG +V+A+F A WCGP +MIAP   EL ++    L  + +DVDE  E +  
Sbjct: 8   DQSFSAETSEG-VVLADFWAPWCGPSKMIAPVLEELDQEMGDKLKIVKIDVDENQETAGK 66
Query: 95  WDIKATPTFFFLKDGQQVDKLVG 117
           + + + PT   LKDG+ V+  VG
Sbjct: 67  YGVMSIPTLLVLKDGEVVETSVG 89

>pdb|2DIY|A Chain A, The Solution Structure Of The Thioredoxin Domain Of Human Thioredoxin-Like Protein 2 Length = 130

Iteration: 1
 Score = 63.9 bits (154), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 51/84 (60%)
Query: 44  KEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTF 103
           K   +++ +F A W   C  +    +EL+++ P + F+ ++ + + E S  ++I + PTF
Sbjct: 36  KAKSLLVVHFWAPWAPQCAQMNEVMAELAKELPQVSFVKLEAEGVPEVSEKYEISSVPTF 95
Query: 104 FFLKDGQQVDKLVGANKPELQKKV 127
            F K+ Q++D+L GA+ PEL KKV
Sbjct: 96  LFFKNSQKIDRLDGAHAPELTKKV 119

>pdb|3DIE|A Chain A, Domain Swapping Of Staphylococcus Aureus Thioredoxin W28a Mutant Length = 106

Iteration: 1
 Score = 63.2 bits (152), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 45  EGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLL-VDVDELVEFSTSWDIKATPTF 103
           E  + + +F AT CGPC+MIAP   EL+  Y     +L +DVDE    +  +++ + PT 
Sbjct: 18  ESGVQLVDFWATACGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTL 77
Query: 104 FFLKDGQQVDKLVG 117
              KDGQ VDK+VG
Sbjct: 78  IVFKDGQPVDKVVG 91

>pdb|1FB0|A Chain A, Crystal Structure Of Thioredoxin M From Spinach Chloroplast (Reduced Form) Length = 105

Iteration: 1
 Score = 62.4 bits (150), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 54/90 (60%), Gaps = 2/90 (2%)
Query: 31  TKDIWDQKMSEASKEGKI-VIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVDEL 88
            +D+ D    E   E ++ V+ +F A WCGPC++IAP   EL+++Y   +    ++ DE 
Sbjct: 2   VQDVNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEA 61
Query: 89  VEFSTSWDIKATPTFFFLKDGQQVDKLVGA 118
              +T ++I++ PT  F K+G++ + ++GA
Sbjct: 62  PGIATQYNIRSIPTVLFFKNGERKESIIGA 91

>pdb|1GL8|A Chain A, Solution Structure Of Thioredoxin M From Spinach, Oxidized Form Length = 104

Iteration: 1
 Score = 62.4 bits (150), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 54/89 (60%), Gaps = 2/89 (2%)
Query: 32  KDIWDQKMSEASKEGKI-VIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVDELV 89
           +D+ D    E   E ++ V+ +F A WCGPC++IAP   EL+++Y   +    ++ DE  
Sbjct: 2   QDVNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAP 61
Query: 90  EFSTSWDIKATPTFFFLKDGQQVDKLVGA 118
             +T ++I++ PT  F K+G++ + ++GA
Sbjct: 62  GIATQYNIRSIPTVLFFKNGERKESIIGA 90

>pdb|2I4A|A Chain A, Crystal Structure Of Thioredoxin From The Acidophile Acetobacter Aceti Length = 107

Iteration: 1
 Score = 62.0 bits (149), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 56/93 (60%), Gaps = 4/93 (4%)
Query: 27  SLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLL-VDV 85
           +L  +   +DQ + +AS    +V+ +F A WCGPC+MI P   E+ +++   + +  V++
Sbjct: 4   TLAVSDSSFDQDVLKASG---LVLVDFWAEWCGPCKMIGPALGEIGKEFAGKVTVAKVNI 60
Query: 86  DELVEFSTSWDIKATPTFFFLKDGQQVDKLVGA 118
           D+  E   ++ +++ PT   ++DG+ +DK VGA
Sbjct: 61  DDNPETPNAYQVRSIPTLMLVRDGKVIDKKVGA 93

>pdb|1NW2|A Chain A, The Crystal Structure Of The Mutant R82e Of Thioredoxin From Alicyclobacillus Acidocaldarius Length = 105

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 55/100 (55%), Gaps = 2/100 (2%)
Query: 31  TKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP-SLMFLLVDVDELV 89
           T  + D    +A +  K V+ +F A WCGPCRM+AP   E +E +   +    ++VDE  
Sbjct: 2   TMTLTDANFQQAIQGDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENP 61
Query: 90  EFSTSWDIKATPTFFFLKDGQQVDKLVGAN-KPELQKKVA 128
           E ++ + I + PT    K G+ V +L+G   K +L+ ++A
Sbjct: 62  ETTSQFGIMSIPTLILFKGGEPVKQLIGYQPKEQLEAQLA 101

>pdb|1QUW|A Chain A, Solution Structure Of The Thioredoxin From Bacillus Acidocaldarius Length = 105

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 55/100 (55%), Gaps = 2/100 (2%)
Query: 31  TKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP-SLMFLLVDVDELV 89
           T  + D    +A +  K V+ +F A WCGPCRM+AP   E +E +   +    ++VDE  
Sbjct: 2   TMTLTDANFQQAIQGDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENP 61
Query: 90  EFSTSWDIKATPTFFFLKDGQQVDKLVGAN-KPELQKKVA 128
           E ++ + I + PT    K G+ V +L+G   K +L+ ++A
Sbjct: 62  ETTSQFGIMSIPTLILFKGGRPVKQLIGYQPKEQLEAQLA 101

>pdb|3NOF|A Chain A, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant Length = 118

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 46  GKIVIANFSATWCGPCRMIAPFFSEL-SEKYPSLMFLLVDVDELVEFSTSWDIKATPTFF 104
            K V+ +F ATWCGP +M+AP   E+ +E+   L    +DVD   E + ++ + + PT  
Sbjct: 27  NKPVLVDFWATWCGPSKMVAPVLEEIATERATDLTVAKLDVDTNPETARNFQVVSIPTLI 86
Query: 105 FLKDGQQVDKLVGA 118
             KDGQ V ++VGA
Sbjct: 87  LFKDGQPVKRIVGA 100

>pdb|2O89|A Chain A, S. Aureus Thioredoxin P31tC32S MUTANT Length = 107

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 35/97 (36%), Positives = 54/97 (55%), Gaps = 7/97 (7%)
Query: 23  GGNVSLVTTKDI-WDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFL 81
           G ++++V   D  +D K+     E  + + +F ATWCG  +MIAP   EL+  Y     +
Sbjct: 1   GSHMAIVKVTDADFDSKV-----ESGVQLVDFWATWCGTSKMIAPVLEELAADYEGKADI 55
Query: 82  L-VDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVG 117
           L +DVDE    +  +++ + PT    KDGQ VDK+VG
Sbjct: 56  LKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVG 92

>pdb|1UVZ|A Chain A, Structure Of Human Thioredoxin 2 Length = 119

Iteration: 1
 Score = 59.7 bits (143), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 44/70 (62%), Gaps = 1/70 (1%)
Query: 49  VIANFSATWCGPCRMIAPFFSEL-SEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLK 107
           V+ +F A WCGPC+++ P   ++ ++++  ++   VD+D+  + +  +++ A PT   +K
Sbjct: 34  VVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTVLAMK 93
Query: 108 DGQQVDKLVG 117
           +G  VDK VG
Sbjct: 94  NGDVVDKFVG 103

>pdb|1RQM|A Chain A, Solution Structure Of The K18gR82E ALICYCLOBACILLUS Acidocaldarius Thioredoxin Mutant Length = 105

Iteration: 1
 Score = 59.7 bits (143), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 55/100 (55%), Gaps = 2/100 (2%)
Query: 31  TKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLL-VDVDELV 89
           T  + D    +A +    V+ +F A WCGPCRM+AP   E +E +   + +  ++VDE  
Sbjct: 2   TMTLTDANFQQAIQGDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENP 61
Query: 90  EFSTSWDIKATPTFFFLKDGQQVDKLVGAN-KPELQKKVA 128
           E ++ + I + PT    K G+ V +L+G   K +L+ ++A
Sbjct: 62  ETTSQFGIMSIPTLILFKGGEPVKQLIGYQPKEQLEAQLA 101

>pdb|1NSW|A Chain A, The Crystal Structure Of The K18g Mutant Of The Thioredoxin From Alicyclobacillus Acidocaldarius Length = 105

Iteration: 1
 Score = 59.7 bits (143), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 54/100 (54%), Gaps = 2/100 (2%)
Query: 31  TKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP-SLMFLLVDVDELV 89
           T  + D    +A +    V+ +F A WCGPCRM+AP   E +E +   +    ++VDE  
Sbjct: 2   TMTLTDANFQQAIQGDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENP 61
Query: 90  EFSTSWDIKATPTFFFLKDGQQVDKLVGAN-KPELQKKVA 128
           E ++ + I + PT    K G+ V +L+G   K +L+ ++A
Sbjct: 62  ETTSQFGIMSIPTLILFKGGRPVKQLIGYQPKEQLEAQLA 101

>pdb|3TCO|A Chain A, Crystallographic And Spectroscopic Characterization Of Sulfolobus Solfataricus Trxa1 Provide Insights Into The Determinants Of Thioredoxin Fold Stability Length = 109

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 53/95 (55%), Gaps = 5/95 (5%)
Query: 25  NVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLV 83
           +V+LV T++ +D    E  +  K+V+ +  A WC PC +  P + +++EKY    +F  +
Sbjct: 4   DVTLVLTEENFD----EVIRNNKLVLVDCWAEWCAPCHLYEPIYKKVAEKYKGKAVFGRL 59
Query: 84  DVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGA 118
           +VDE  + +  + +   PT     +GQ VD LVGA
Sbjct: 60  NVDENQKIADKYSVLNIPTTLIFVNGQLVDSLVGA 94

>pdb|2PUK|C Chain C, Crystal Srtucture Of The Binary Complex Between Ferredoxin: Thioredoxin Reductase And Thioredoxin M Length = 106

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 53/89 (59%), Gaps = 2/89 (2%)
Query: 32  KDIWDQKMSEASKEGKI-VIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVDELV 89
           +D+ D    E   E ++ V+ +F A WCGP ++IAP   EL+++Y   +    ++ DE  
Sbjct: 3   QDVNDSSWKEFVLESEVPVMVDFWAPWCGPSKLIAPVIDELAKEYSGKIAVYKLNTDEAP 62
Query: 90  EFSTSWDIKATPTFFFLKDGQQVDKLVGA 118
             +T ++I++ PT  F K+G++ + ++GA
Sbjct: 63  GIATQYNIRSIPTVLFFKNGERKESIIGA 91

>pdb|1FAA|A Chain A, Crystal Structure Of Thioredoxin F From Spinach Chloroplast (Long Form) Length = 124

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 62/117 (52%), Gaps = 4/117 (3%)
Query: 15  GEHPVEFAGGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEK 74
           G   +E   G V+ V     W   + +A+ +  +V+  F+  WCGPC+ +AP + +L+E+
Sbjct: 9   GTQEMEAIVGKVTEVNKDTFWP--IVKAAGDKPVVLDMFT-QWCGPCKAMAPKYEKLAEE 65
Query: 75  YPSLMFLLVDVD-ELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKVAAA 130
           Y  ++FL +D + E    +    I+  PTF  LK+   V ++ GA   +L + + AA
Sbjct: 66  YLDVIFLKLDCNQENKTLAKELGIRVVPTFKILKENSVVGEVTGAKYDKLLEAIQAA 122

>pdb|3HYP|A Chain A, Crystal Structure Of Bacteroides Fragilis Trxp_s105g Mutant Length = 141

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Query: 47  KIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLL-VDVDELVEFSTSWDIKATPTFFF 105
           K  I +F A WCGPC+M+AP   ELS++Y   +++  V+VD+  E +  + I+  PT +F
Sbjct: 52  KPAIVDFYADWCGPCKMVAPILEELSKEYAGKIYIYKVNVDKEPELARDFGIQGIPTIWF 111
Query: 106 L 106
           +
Sbjct: 112 V 112

>pdb|3HXS|A Chain A, Crystal Structure Of Bacteroides Fragilis Trxp Length = 141

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 40/61 (65%), Gaps = 1/61 (1%)
Query: 47  KIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLL-VDVDELVEFSTSWDIKATPTFFF 105
           K  I +F A WCGPC+M+AP   ELS++Y   +++  V+VD+  E +  + I++ PT +F
Sbjct: 52  KPAIVDFYADWCGPCKMVAPILEELSKEYAGKIYIYKVNVDKEPELARDFGIQSIPTIWF 111
Query: 106 L 106
           +
Sbjct: 112 V 112

>pdb|1R26|A Chain A, Crystal Structure Of Thioredoxin From Trypanosoma Brucei Brucei Length = 125

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 25/83 (30%), Positives = 46/83 (55%)
Query: 45  EGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFF 104
           E  + +A F+A WCGPC+ I     +++ ++P++ F  VD D   E  +   +   PTF 
Sbjct: 36  EDILTVAWFTAVWCGPCKTIERPMEKIAYEFPTVKFAKVDADNNSEIVSKCRVLQLPTFI 95
Query: 105 FLKDGQQVDKLVGANKPELQKKV 127
             + G+ +  ++GAN   L++K+
Sbjct: 96  IARSGKMLGHVIGANPGMLRQKL 118

>pdb|1DBY|A Chain A, Nmr Structures Of Chloroplast Thioredoxin M Ch2 From The Green Alga Chlamydomonas Reinhardtii Length = 107

Iteration: 1
 Score = 56.6 bits (135), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 49  VIANFSATWCGPCRMIAPFFSELSEKYP-SLMFLLVDVDELVEFSTSWDIKATPTFFFLK 107
           V+ +F A WCGPCR+IAP   E++ +Y   L  + ++ DE    ++ + I++ PT    K
Sbjct: 22  VLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDESPNVASEYGIRSIPTIMVFK 81
Query: 108 DGQQVDKLVGA 118
            G++ + ++GA
Sbjct: 82  GGKKCETIIGA 92

>pdb|3DYR|A Chain A, Crystal Structure Of E. Coli Thioredoxin Mutant I76t In Its Oxidized Form Length = 111

Iteration: 1
 Score = 56.2 bits (134), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 51/89 (57%), Gaps = 4/89 (4%)
Query: 31  TKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVDELV 89
           T D +D  + +A  +G I++ +F A WCGPC+MIAP   E++++Y   L    +++D+  
Sbjct: 9   TDDSFDTDVLKA--DGAILV-DFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNP 65
Query: 90  EFSTSWDIKATPTFFFLKDGQQVDKLVGA 118
             +  + I+ TPT    K+G+     VGA
Sbjct: 66  GTAPKYGIRGTPTLLLFKNGEVAATKVGA 94

>pdb|1F9M|A Chain A, Crystal Structure Of Thioredoxin F From Spinach Chloroplast (Short Form) Length = 112

Iteration: 1
 Score = 55.8 bits (133), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 59/108 (54%), Gaps = 4/108 (3%)
Query: 24  GNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLV 83
           G V+ V     W   + +A+ +  +V+  F+  WCGPC+ +AP + +L+E+Y  ++FL +
Sbjct: 6   GKVTEVNKDTFWP--IVKAAGDKPVVLDMFT-QWCGPCKAMAPKYEKLAEEYLDVIFLKL 62
Query: 84  DVD-ELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKVAAA 130
           D + E    +    I+  PTF  LK+   V ++ GA   +L + + AA
Sbjct: 63  DCNQENKTLAKELGIRVVPTFKILKENSVVGEVTGAKYDKLLEAIQAA 110

>pdb|1V98|A Chain A, Crystal Structure Analysis Of Thioredoxin From Thermus Thermophilus Length = 140

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 48  IVIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVDELVEFSTSWDIKATPTFFFL 106
           + + +F A WCGPCR+++P   EL+  +   L  + V+VDE    +  + +++ PT    
Sbjct: 52  LTLVDFFAPWCGPCRLVSPILEELARDHAGRLKVVKVNVDEHPGLAARYGVRSVPTLVLF 111
Query: 107 KDGQQVDKLVGAN 119
           + G  V   VGA+
Sbjct: 112 RRGAPVATWVGAS 124

>pdb|3P2A|A Chain A, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis Length = 148

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Query: 50  IANFSATWCGPCRMIAPFFSEL-SEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKD 108
           + +F A WCGPCR  AP F+E  +E+   + F+ V+ +     ST + I++ PT    ++
Sbjct: 59  VIDFWAPWCGPCRSFAPIFAETAAERAGKVRFVKVNTEAEPALSTRFRIRSIPTIXLYRN 118
Query: 109 GQQVDKLVGA 118
           G+ +D L GA
Sbjct: 119 GKXIDXLNGA 128

>pdb|2H71|A Chain A, Crystal Structure Of Thioredoxin Mutant D47e In Hexagonal (P61) Space Group Length = 108

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 49  VIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVDELVEFSTSWDIKATPTFFFLK 107
           ++ +F A WCGPC+MIAP   E++E+Y   L    +++D+    +  + I+  PT    K
Sbjct: 23  ILVDFWAEWCGPCKMIAPILDEIAEEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFK 82
Query: 108 DGQQVDKLVGA 118
           +G+     VGA
Sbjct: 83  NGEVAATKVGA 93

>pdb|2H70|A Chain A, Crystal Structure Of Thioredoxin Mutant D9e In Hexagonal (P61) Space Group Length = 108

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 51/89 (57%), Gaps = 4/89 (4%)
Query: 31  TKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVDELV 89
           T+D +D  + +A  +G I++ +F A WCGPC+MIAP   E++++Y   L    +++D+  
Sbjct: 8   TEDSFDTDVLKA--DGAILV-DFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNP 64
Query: 90  EFSTSWDIKATPTFFFLKDGQQVDKLVGA 118
             +  + I+  PT    K+G+     VGA
Sbjct: 65  GTAPKYGIRGIPTLLLFKNGEVAATKVGA 93

>pdb|3DXB|A Chain A, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin Length = 222

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 49  VIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVDELVEFSTSWDIKATPTFFFLK 107
           ++ +F A WCGPC+MIAP   E++++Y   L    +++D+    +  + I+  PT    K
Sbjct: 33  ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFK 92
Query: 108 DGQQVDKLVGA 118
           +G+     VGA
Sbjct: 93  NGEVAATKVGA 103

>pdb|2H76|A Chain A, Crystal Structure Of Thioredoxin Mutant D10e In Hexagonal (P61) Space Group Length = 108

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 49  VIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVDELVEFSTSWDIKATPTFFFLK 107
           ++ +F A WCGPC+MIAP   E++++Y   L    +++D+    +  + I+  PT    K
Sbjct: 23  ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFK 82
Query: 108 DGQQVDKLVGA 118
           +G+     VGA
Sbjct: 83  NGEVAATKVGA 93

>pdb|2H75|A Chain A, Crystal Structure Of Thioredoxin Mutant D13e In Hexagonal (P61) Space Group Length = 108

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 49  VIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVDELVEFSTSWDIKATPTFFFLK 107
           ++ +F A WCGPC+MIAP   E++++Y   L    +++D+    +  + I+  PT    K
Sbjct: 23  ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFK 82
Query: 108 DGQQVDKLVGA 118
           +G+     VGA
Sbjct: 83  NGEVAATKVGA 93

>pdb|2H74|A Chain A, Crystal Structure Of Thioredoxin Mutant D2e In Hexagonal (P61) Space Group Length = 108

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 49  VIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVDELVEFSTSWDIKATPTFFFLK 107
           ++ +F A WCGPC+MIAP   E++++Y   L    +++D+    +  + I+  PT    K
Sbjct: 23  ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFK 82
Query: 108 DGQQVDKLVGA 118
           +G+     VGA
Sbjct: 83  NGEVAATKVGA 93

>pdb|1ZZY|A Chain A, Crystal Structure Of Thioredoxin Mutant L7v Length = 108

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 50/90 (55%), Gaps = 4/90 (4%)
Query: 30  TTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVDEL 88
            T D +D  + +A  +G I++ +F A WCGPC+MIAP   E++++Y   L    +++D+ 
Sbjct: 7   VTDDSFDTDVLKA--DGAILV-DFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQN 63
Query: 89  VEFSTSWDIKATPTFFFLKDGQQVDKLVGA 118
              +  + I+  PT    K+G+     VGA
Sbjct: 64  PGTAPKYGIRGIPTLLLFKNGEVAATKVGA 93

>pdb|2H73|A Chain A, Crystal Structure Of Thioredoxin Mutant D43e In Hexagonal (P61) Space Group Length = 108

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 49  VIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVDELVEFSTSWDIKATPTFFFLK 107
           ++ +F A WCGPC+MIAP   E++++Y   L    +++D+    +  + I+  PT    K
Sbjct: 23  ILVDFWAEWCGPCKMIAPILEEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFK 82
Query: 108 DGQQVDKLVGA 118
           +G+     VGA
Sbjct: 83  NGEVAATKVGA 93

>pdb|2FCH|A Chain A, Crystal Structure Of Thioredoxin Mutant G74s Length = 108

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 51/89 (57%), Gaps = 4/89 (4%)
Query: 31  TKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVDELV 89
           T D +D  + +A  +G I++ +F A WCGPC+MIAP   E++++Y   L    +++D+  
Sbjct: 8   TDDSFDTDVLKA--DGAILV-DFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNP 64
Query: 90  EFSTSWDIKATPTFFFLKDGQQVDKLVGA 118
             +  + I++ PT    K+G+     VGA
Sbjct: 65  GTAPKYGIRSIPTLLLFKNGEVAATKVGA 93

>pdb|2TRX|A Chain A, Crystal Structure Of Thioredoxin From Escherichia Coli At 1.68 Angstroms Resolution Length = 108

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 50/89 (56%), Gaps = 4/89 (4%)
Query: 31  TKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVDELV 89
           T D +D  + +A  +G I++ +F A WCGPC+MIAP   E++++Y   L    +++D+  
Sbjct: 8   TDDSFDTDVLKA--DGAILV-DFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNP 64
Query: 90  EFSTSWDIKATPTFFFLKDGQQVDKLVGA 118
             +  + I+  PT    K+G+     VGA
Sbjct: 65  GTAPKYGIRGIPTLLLFKNGEVAATKVGA 93

>pdb|1XOB|A Chain A, Thioredoxin (Reduced Dithio Form), Nmr, 20 Structures Length = 108

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 49  VIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVDELVEFSTSWDIKATPTFFFLK 107
           ++ +F A WCGPC+MIAP   E++++Y   L    +++D+    +  + I+  PT    K
Sbjct: 23  ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFK 82
Query: 108 DGQQVDKLVGA 118
           +G+     VGA
Sbjct: 83  NGEVAATKVGA 93

>pdb|2F51|A Chain A, Structure Of Trichomonas Vaginalis Thioredoxin Length = 118

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 48/84 (57%), Gaps = 4/84 (4%)
Query: 48  IVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFL- 106
           +V+ +F ATWCGPC+ +      ++E    + F+ VDVD+    + ++ + + P  FF+ 
Sbjct: 25  LVLVDFFATWCGPCQRLGQILPSIAEANKDVTFIKVDVDKNGNAADAYGVSSIPALFFVK 84
Query: 107 KDGQQV---DKLVGANKPELQKKV 127
           K+G ++   D+ VGA+   ++  +
Sbjct: 85  KEGNEIKTLDQFVGADVSRIKADI 108

>pdb|2EIO|A Chain A, Design Of Disulfide-Linked Thioredoxin Dimers And Multimers Through Analysis Of Crystal Contacts Length = 108

Iteration: 1
 Score = 53.5 bits (127), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 50/89 (56%), Gaps = 4/89 (4%)
Query: 31  TKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVDELV 89
           T D +D  + +A  +G I++ +F A WCGPC+MIAP   E++++Y   L    +++D+  
Sbjct: 8   TDDSFDTDVLKA--DGAILV-DFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNP 64
Query: 90  EFSTSWDIKATPTFFFLKDGQQVDKLVGA 118
             +  + I+  PT    K+G+     VGA
Sbjct: 65  GTAPKYGIRGIPTLLLFKNGEVAATKVGA 93

>pdb|2EIR|A Chain A, Design Of Disulfide-Linked Thioredoxin Dimers And Multimers Through Analysis Of Crystal Contacts Length = 108

Iteration: 1
 Score = 53.5 bits (127), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 50/89 (56%), Gaps = 4/89 (4%)
Query: 31  TKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVDELV 89
           T D +D  + +A  +G I++ +F A WCGPC+MIAP   E++++Y   L    +++D+  
Sbjct: 8   TDDSFDTDVLKA--DGAILV-DFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNP 64
Query: 90  EFSTSWDIKATPTFFFLKDGQQVDKLVGA 118
             +  + I+  PT    K+G+     VGA
Sbjct: 65  GTAPKYGIRGIPTLLLFKNGEVAATKVGA 93

>pdb|2H6Y|A Chain A, Crystal Structure Of Thioredoxin Mutant E48d In Hexagonal (P61) Space Group Length = 108

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 49/89 (55%), Gaps = 4/89 (4%)
Query: 31  TKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVDELV 89
           T D +D  + +A  +G I++ +F A WCGPC+MIAP   E+++ Y   L    +++D+  
Sbjct: 8   TDDSFDTDVLKA--DGAILV-DFWAEWCGPCKMIAPILDEIADDYQGKLTVAKLNIDQNP 64
Query: 90  EFSTSWDIKATPTFFFLKDGQQVDKLVGA 118
             +  + I+  PT    K+G+     VGA
Sbjct: 65  GTAPKYGIRGIPTLLLFKNGEVAATKVGA 93

>pdb|2KUC|A Chain A, Solution Structure Of A Putative Disulphide-Isomerase From Bacteroides Thetaiotaomicron Length = 130

Iteration: 1
 Score = 53.1 bits (126), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 35/105 (33%), Positives = 54/105 (51%), Gaps = 8/105 (7%)
Query: 37  QKMSEASKEGKIVIANFSATWCGPCRMIAP--FFSELSEKYPSLMFLLVDVD----ELVE 90
           + +  A  E K++  +   TWCGPC+ ++   F   L   Y +  F+ + +D    E VE
Sbjct: 18  EALKRAEVEDKLLFVDCFTTWCGPCKRLSKVVFKDSLVADYFNRHFVNLKMDMEKGEGVE 77
Query: 91  FSTSWDIKATPTFFFLK-DGQQVDKLVGA-NKPELQKKVAAAVDS 133
               + + A PT  F+   G+ V +LVGA + PEL KKV   V+S
Sbjct: 78  LRKKYGVHAYPTLLFINSSGEVVYRLVGAEDAPELLKKVKLGVES 122

>pdb|2H72|A Chain A, Crystal Structure Of Thioredoxin Mutant E85d In Hexagonal (P61) Space Group Length = 108

Iteration: 1
 Score = 53.1 bits (126), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 49/89 (55%), Gaps = 4/89 (4%)
Query: 31  TKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVDELV 89
           T D +D  + +A  +G I++ +F A WCGPC+MIAP   E++++Y   L    +++D+  
Sbjct: 8   TDDSFDTDVLKA--DGAILV-DFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNP 64
Query: 90  EFSTSWDIKATPTFFFLKDGQQVDKLVGA 118
             +  + I+  PT    K+G      VGA
Sbjct: 65  GTAPKYGIRGIPTLLLFKNGDVAATKVGA 93

>pdb|2DJ2|A Chain A, The Solution Structure Of The Second Thioredoxin Domain Of Mouse Protein Disulfide-Isomerase A4 Length = 120

Iteration: 1
 Score = 53.1 bits (126), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 8/93 (8%)
Query: 25  NVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFF----SELSEKYPSLMF 80
            V+L  TKD +D  ++ A     I++  F A WCG C+ +AP +     ELS++ P +  
Sbjct: 7   GVTLSLTKDNFDDVVNNAD----IILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPL 62
Query: 81  LLVDVDELVEFSTSWDIKATPTFFFLKDGQQVD 113
             VD  E  + +  +D+   PT    + G+  D
Sbjct: 63  AKVDATEQTDLAKRFDVSGYPTLKIFRKGRPFD 95

>pdb|2EIQ|A Chain A, Design Of Disulfide-linked Thioredoxin Dimers And Multimers Through Analysis Of Crystal Contacts Length = 108

Iteration: 1
 Score = 52.8 bits (125), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 50/89 (56%), Gaps = 4/89 (4%)
Query: 31  TKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVDELV 89
           T D +D  + +A  +G I++ +F A WCGPC+MIAP   E++++Y   L    +++D+  
Sbjct: 8   TDDSFDTDVLKA--DGAILV-DFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNP 64
Query: 90  EFSTSWDIKATPTFFFLKDGQQVDKLVGA 118
             +  + I+  PT    K+G+     VGA
Sbjct: 65  GTAPKYGIRGIPTLLLFKNGEVAACKVGA 93

>pdb|2TIR|A Chain A, Crystal Structure Analysis Of A Mutant Escherichia Coli Thioredoxin In Which Lysine 36 Is Replaced By Glutamic Acid Length = 108

Iteration: 1
 Score = 52.8 bits (125), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 49/89 (55%), Gaps = 4/89 (4%)
Query: 31  TKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVDELV 89
           T D +D  + +A  +G I++ +F A WCGPC MIAP   E++++Y   L    +++D+  
Sbjct: 8   TDDSFDTDVLKA--DGAILV-DFWAEWCGPCEMIAPILDEIADEYQGKLTVAKLNIDQNP 64
Query: 90  EFSTSWDIKATPTFFFLKDGQQVDKLVGA 118
             +  + I+  PT    K+G+     VGA
Sbjct: 65  GTAPKYGIRGIPTLLLFKNGEVAATKVGA 93

>pdb|2H6Z|A Chain A, Crystal Structure Of Thioredoxin Mutant E44d In Hexagonal (P61) Space Group Length = 108

Iteration: 1
 Score = 52.4 bits (124), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 50/89 (56%), Gaps = 4/89 (4%)
Query: 31  TKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVDELV 89
           T D +D  + +A  +G I++ +F A WCGPC+MIAP   +++++Y   L    +++D+  
Sbjct: 8   TDDSFDTDVLKA--DGAILV-DFWAEWCGPCKMIAPILDDIADEYQGKLTVAKLNIDQNP 64
Query: 90  EFSTSWDIKATPTFFFLKDGQQVDKLVGA 118
             +  + I+  PT    K+G+     VGA
Sbjct: 65  GTAPKYGIRGIPTLLLFKNGEVAATKVGA 93

>pdb|3IDV|A Chain A, Crystal Structure Of The A0a Fragment Of Erp72 Length = 241

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 48/92 (52%), Gaps = 8/92 (8%)
Query: 26  VSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFS----ELSEKYPSLMFL 81
           V+LV TK+ +D+ +++A     I++  F A WCG C+ +AP +     ELS++ P +   
Sbjct: 131 VTLVLTKENFDEVVNDAD----IILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLA 186
Query: 82  LVDVDELVEFSTSWDIKATPTFFFLKDGQQVD 113
            VD     + +  +D+   PT    + G+  D
Sbjct: 187 KVDATAETDLAKRFDVSGYPTLKIFRKGRPYD 218

>pdb|2L5L|A Chain A, Solution Structure Of Thioredoxin From Bacteroides Vulgatus Length = 136

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 47  KIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLL-VDVDELVEFSTSWDIKATPTFFF 105
           K  I +F A WCGPC+M+AP   EL+++Y   + +  VD ++  E + ++ I++ P+  F
Sbjct: 39  KPAIVDFYADWCGPCKMVAPILDELAKEYDGQIVIYKVDTEKEQELAGAFGIRSIPSILF 98
Query: 106 L 106
           +
Sbjct: 99  I 99

>pdb|2PU9|C Chain C, Crystal Srtucture Of The Binary Complex Between Ferredoxin: Thioredoxin Reductase And Thioredoxin F Length = 111

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/108 (29%), Positives = 58/108 (53%), Gaps = 4/108 (3%)
Query: 24  GNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLV 83
           G V+ V     W   + +A+ +  +V+  F+  WCGP + +AP + +L+E+Y  ++FL +
Sbjct: 5   GKVTEVNKDTFWP--IVKAAGDKPVVLDMFT-QWCGPSKAMAPKYEKLAEEYLDVIFLKL 61
Query: 84  DVD-ELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKVAAA 130
           D + E    +    I+  PTF  LK+   V ++ GA   +L + + AA
Sbjct: 62  DCNQENKTLAKELGIRVVPTFKILKENSVVGEVTGAKYDKLLEAIQAA 109

>pdb|2O8V|B Chain B, Paps Reductase In A Covalent Complex With Thioredoxin C35a Length = 128

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 49/89 (55%), Gaps = 4/89 (4%)
Query: 31  TKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVDELV 89
           T D +D  + +A  +G I++ +F A WCGP +MIAP   E++++Y   L    +++D+  
Sbjct: 28  TDDSFDTDVLKA--DGAILV-DFWAEWCGPAKMIAPILDEIADEYQGKLTVAKLNIDQNP 84
Query: 90  EFSTSWDIKATPTFFFLKDGQQVDKLVGA 118
             +  + I+  PT    K+G+     VGA
Sbjct: 85  GTAPKYGIRGIPTLLLFKNGEVAATKVGA 113

>pdb|1SRX|A Chain A, Three-Dimensional Structure Of Escherichia Coli Thioredoxin-S2 To 2.8 Angstroms Resolution Length = 108

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 49/89 (55%), Gaps = 4/89 (4%)
Query: 31  TKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVDELV 89
           T D +D  + +A  +G I++ +F A WCGPC+MIAP   E++++Y   L    +++D+  
Sbjct: 8   TDDSFDTDLVKA--DGAILV-DFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNP 64
Query: 90  EFSTSWDIKATPTFFFLKDGQQVDKLVGA 118
             +  +  +  PT    K+G+     VGA
Sbjct: 65  GTAPKYIERGIPTLLLFKNGEVAATKVGA 93

>pdb|2FD3|A Chain A, Crystal Structure Of Thioredoxin Mutant P34h Length = 108

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 49  VIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVDELVEFSTSWDIKATPTFFFLK 107
           ++ +F A WCG C+MIAP   E++++Y   L    +++D+    +  + I+  PT    K
Sbjct: 23  ILVDFWAEWCGHCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFK 82
Query: 108 DGQQVDKLVGA 118
           +G+     VGA
Sbjct: 83  NGEVAATKVGA 93

>pdb|1F6M|C Chain C, Crystal Structure Of A Complex Between Thioredoxin Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+ Length = 108

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 49  VIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVDELVEFSTSWDIKATPTFFFLK 107
           ++ +F A WCGP +MIAP   E++++Y   L    +++D+    +  + I+  PT    K
Sbjct: 23  ILVDFWAEWCGPSKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFK 82
Query: 108 DGQQVDKLVGA 118
           +G+     VGA
Sbjct: 83  NGEVAATKVGA 93

>pdb|1THO|A Chain A, Crystal Structure Of A Mutant Escherichia Coli Thioredoxin With An Arginine Insertion In The Active Site Length = 109

Iteration: 1
 Score = 49.3 bits (116), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 23/72 (31%), Positives = 40/72 (55%), Gaps = 2/72 (2%)
Query: 49  VIANFSATWCG-PCRMIAPFFSELSEKYPS-LMFLLVDVDELVEFSTSWDIKATPTFFFL 106
           ++ +F A WCG PC+MIAP   E++++Y   L    +++D+    +  + I+  PT    
Sbjct: 23  ILVDFWAEWCGRPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLF 82
Query: 107 KDGQQVDKLVGA 118
           K+G+     VGA
Sbjct: 83  KNGEVAATKVGA 94

>pdb|1KEB|A Chain A, Crystal Structure Of Double Mutant M37l,P40s E.Coli Thioredoxin Length = 108

Iteration: 1
 Score = 49.3 bits (116), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 49  VIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVDELVEFSTSWDIKATPTFFFLK 107
           ++ +F A WCGPC++IA    E++++Y   L    +++D+    +  + I+  PT    K
Sbjct: 23  ILVDFWAEWCGPCKLIASILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFK 82
Query: 108 DGQQVDKLVGA 118
           +G+     VGA
Sbjct: 83  NGEVAATKVGA 93

>pdb|1T00|A Chain A, The Structure Of Thioredoxin From S. Coelicolor Length = 112

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 2/80 (2%)
Query: 44  KEGKIVIANFSATWCGPCRMIAPFFSELSEKY-PSLMFLLVDVDELVEFSTSWDIKATPT 102
           K  K V+ +F A WCGPCR IAP    ++ +Y   +  + +++DE    +  + + + PT
Sbjct: 21  KNDKPVLVDFWAAWCGPCRQIAPSLEAIAAEYGDKIEIVKLNIDENPGTAAKYGVMSIPT 80
Query: 103 FFFLKDGQQVDKLVGANKPE 122
               + G+    +VGA KP+
Sbjct: 81  LNVYQGGEVAKTIVGA-KPK 99

>pdb|3UVT|A Chain A, Crystal Structure Of The Third Catalytic Domain Of Erp46 Length = 111

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/100 (28%), Positives = 50/100 (50%), Gaps = 9/100 (9%)
Query: 24  GNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEK-YPSLMFL- 81
           G+  L  T++ +D  ++E      I    F A WCG C+ +AP + ELS+K +P L  + 
Sbjct: 4   GSTVLALTENNFDDTIAEG-----ITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVK 58
Query: 82  LVDVDELVE--FSTSWDIKATPTFFFLKDGQQVDKLVGAN 119
           + +VD   E    + + ++  PT    + G++V +  G  
Sbjct: 59  IAEVDCTAERNICSKYSVRGYPTLLLFRGGKKVSEHSGGR 98

>pdb|2DIZ|A Chain A, The Solution Structure Of The Third Thioredoxin Domain Of Human Thioredoxin Domain-Containing Protein 5 Length = 117

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 9/96 (9%)
Query: 28  LVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEK-YPSLMFL-LVDV 85
           L  T++ +D  ++E      I    F A WCG C+ +AP + ELS+K +P L  + + +V
Sbjct: 10  LALTENNFDDTIAEG-----ITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEV 64
Query: 86  DELVE--FSTSWDIKATPTFFFLKDGQQVDKLVGAN 119
           D   E    + + ++  PT    + G++V +  G  
Sbjct: 65  DCTAERNICSKYSVRGYPTLLLFRGGKKVSEHSGGR 100

>pdb|3D6I|A Chain A, Structure Of The Thioredoxin-Like Domain Of Yeast Glutaredoxin 3 Length = 112

Iteration: 1
 Score = 45.8 bits (107), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 4/79 (5%)
Query: 47  KIVIANFSATWCGPCRMIAPFFSELSEKYPS---LMFLLVDVDELVEFSTSWDIKATPTF 103
           K+++  F  +W  PC+ +   F  +S + PS   + FL +D DE  E S  ++I A P F
Sbjct: 22  KLIVLYFHTSWAEPCKALKQVFEAISNE-PSNSNVSFLSIDADENSEISELFEISAVPYF 80
Query: 104 FFLKDGQQVDKLVGANKPE 122
             +  G  + +L GA+  E
Sbjct: 81  IIIHKGTILKELSGADPKE 99

>pdb|3UJ1|A Chain A, Crystal Structure Of The Third Thioredoxin Domain Of Human Erp46 Length = 110

Iteration: 1
 Score = 45.4 bits (106), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 9/96 (9%)
Query: 28  LVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEK-YPSLMFL-LVDV 85
           L  T++ +D  ++E      I    F A WCG C+ +AP + ELS+K +P L  + + +V
Sbjct: 3   LALTENNFDDTIAEG-----ITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEV 57
Query: 86  DELVE--FSTSWDIKATPTFFFLKDGQQVDKLVGAN 119
           D   E    + + ++  PT    + G++V +  G  
Sbjct: 58  DCTAERNICSKYSVRGYPTLLLFRGGKKVSEHSGGR 93

>pdb|1TXX|A Chain A, Active-Site Variant Of E.Coli Thioredoxin Length = 108

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 49  VIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVDELVEFSTSWDIKATPTFFFLK 107
           ++ +F A WC  C+MIAP   E++++Y   L    +++D+    +  + I+  PT    K
Sbjct: 23  ILVDFWAEWCVWCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFK 82
Query: 108 DGQQVDKLVGA 118
           +G+     VGA
Sbjct: 83  NGEVAATKVGA 93

>pdb|3GNJ|A Chain A, The Crystal Structure Of A Thioredoxin-Related Protein From Desulfitobacterium Hafniense Dcb Length = 111

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 2/90 (2%)
Query: 45  EGKIVIANFSATWCGPCRMIAPFFSELSEKYP-SLMFLLVDVDELVEFSTSWDIKATPTF 103
           EGK  +  FS   C  C+ + P   EL   Y  S  F  VDV+E       + +K  P  
Sbjct: 21  EGKACLVXFSRKNCHVCQKVTPVLEELRLNYEESFGFYYVDVEEEKTLFQRFSLKGVPQI 80
Query: 104 FFLKDGQQVDKLVG-ANKPELQKKVAAAVD 132
            + KDG+   K  G     E+++ +A  ++
Sbjct: 81  LYFKDGEYKGKXAGDVEDDEVEQXIADVLE 110

>pdb|1OAZ|A Chain A, Ige Fv Spe7 Complexed With A Recombinant Thioredoxin Length = 123

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 15/85 (17%)
Query: 49  VIANFSATWCGP--------------CRMIAPFFSELSEKYPS-LMFLLVDVDELVEFST 93
           ++ +F A WCGP              C+MIAP   E++++Y   L    +++D+    + 
Sbjct: 24  ILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAP 83
Query: 94  SWDIKATPTFFFLKDGQQVDKLVGA 118
            + I+  PT    K+G+     VGA
Sbjct: 84  KYGIRGIPTLLLFKNGEVAATKVGA 108

>pdb|3CXG|A Chain A, Crystal Structure Of Plasmodium Falciparum Thioredoxin, Pfi0790w Length = 133

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/116 (26%), Positives = 57/116 (49%), Gaps = 8/116 (6%)
Query: 15  GEHPVEFAGGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFF-SELSE 73
           G   + F G ++  +  K+        +S +   ++  F A WC PC  I  +F ++L+ 
Sbjct: 10  GRENLYFQGQSI-YIELKNTGSLNQVFSSTQNSSIVIKFGAVWCKPCNKIKEYFKNQLNY 68
Query: 74  KYPSLMFLLVDVDELVEFSTSWDIKATPTF-FFLKDGQQ---VDKLVGANKPELQK 125
            Y +L+   +DVD   + +   +IKA PTF F+     +   V  + GAN+ +++K
Sbjct: 69  YYVTLV--DIDVDIHPKLNDQHNIKALPTFEFYFNLNNEWVLVHTVEGANQNDIEK 122

>pdb|3HDC|A Chain A, The Crystal Structure Of Thioredoxin Protein From Geobacter Metallireducens Length = 158

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 45/87 (51%), Gaps = 6/87 (6%)
Query: 37  QKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS--LMFLLVDVDELVEFSTS 94
           +  S A   GKIV+ NF A+WC  CR   P    L + +P   L+ L V+V++   F   
Sbjct: 32  ENKSLAQYRGKIVLVNFWASWCPYCRDEXPSXDRLVKSFPKGDLVVLAVNVEK--RFPEK 89
Query: 95  WDIKATPTFFFLKDGQ-QVDKLVGANK 120
           +  +A  +F FL D   QV +  GAN+
Sbjct: 90  YR-RAPVSFNFLSDATGQVQQRYGANR 115

>pdb|2DJ1|A Chain A, The Solution Structure Of The First Thioredoxin Domain Of Mouse Protein Disulfide-Isomerase A4 Length = 140

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 4/83 (4%)
Query: 49  VIANFSATWCGPCRMIAPFF----SELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFF 104
           V+  F A WCG C+  AP +    S L +  P +    +D       ++ +D+   PT  
Sbjct: 37  VLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDATSASMLASKFDVSGYPTIK 96
Query: 105 FLKDGQQVDKLVGANKPELQKKV 127
            LK GQ VD      + E+  KV
Sbjct: 97  ILKKGQAVDYDGSRTQEEIVAKV 119

>pdb|1ZCP|A Chain A, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa (Caca) Length = 108

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 47/89 (52%), Gaps = 4/89 (4%)
Query: 31  TKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVDELV 89
           T D +D  + +A  +G I++ +F A WC   +MIAP   E++++Y   L    +++D+  
Sbjct: 8   TDDSFDTDVLKA--DGAILV-DFWAEWCACAKMIAPILDEIADEYQGKLTVAKLNIDQNP 64
Query: 90  EFSTSWDIKATPTFFFLKDGQQVDKLVGA 118
             +  + I+  PT    K+G+     VGA
Sbjct: 65  GTAPKYGIRGIPTLLLFKNGEVAATKVGA 93

>pdb|3GL3|A Chain A, Crystal Structure Of A Putative Thiol:disulfide Interchange Protein Dsbe From Chlorobium Tepidum Length = 152

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 58/118 (49%), Gaps = 28/118 (23%)
Query: 42  ASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVD--------------E 87
           + K G +V  +F A+WCGPCR   P+ ++   KY +  F +V V+               
Sbjct: 24  SDKTGSVVYLDFWASWCGPCRQSFPWXNQXQAKYKAKGFQVVAVNLDAKTGDAXKFLAQV 83
Query: 88  LVEFSTSWD----------IKATPTFFFL-KDGQQVDKLVG---ANKPELQKKVAAAV 131
             EF+ ++D          +K  PT F + ++G+ + + VG   A+K  L++++ AA+
Sbjct: 84  PAEFTVAFDPKGQTPRLYGVKGXPTSFLIDRNGKVLLQHVGFRPADKEALEQQILAAL 141

>pdb|2PPT|A Chain A, Crystal Structure Of Thioredoxin-2 Length = 155

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 24/98 (24%), Positives = 42/98 (42%), Gaps = 3/98 (3%)
Query: 25  NVSLVTTK--DIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLL 82
              L+T K   I    ++ A ++   ++ +F A WCGPCR +AP F   +      + L 
Sbjct: 41  GAGLITGKVAGIDPAILARAERDDLPLLVDFWAPWCGPCRQMAPQFQAAAATLAGQVRLA 100
Query: 83  -VDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGAN 119
            +D       +    I+  P F     G+++ +  GA 
Sbjct: 101 KIDTQAHPAVAGRHRIQGIPAFILFHKGRELARAAGAR 138

>pdb|2LJA|A Chain A, Solution Structure Of A Putative Thiol-Disulfide Oxidoreductase From Bacteroides Vulgatus Length = 152

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 20/43 (46%), Positives = 25/43 (58%)
Query: 33 DIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKY 75
          DI  + +S A  +GK +  +  ATWCGPCR   P   EL EKY
Sbjct: 17 DINGKTVSLADLKGKYIYIDVWATWCGPCRGELPALKELEEKY 59

>pdb|1MEK|A Chain A, Human Protein Disulfide Isomerase, Nmr, 40 Structures Length = 120

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 19/75 (25%), Positives = 37/75 (49%), Gaps = 4/75 (5%)
Query: 39  MSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS----LMFLLVDVDELVEFSTS 94
            +EA    K ++  F A WCG C+ +AP +++ + K  +    +    VD  E  + +  
Sbjct: 17  FAEALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEESDLAQQ 76
Query: 95  WDIKATPTFFFLKDG 109
           + ++  PT  F ++G
Sbjct: 77  YGVRGYPTIKFFRNG 91

>pdb|2ALB|A Chain A, Nmr Structure Of The N-Terminal Domain A Of The Glycoprotein Chaperone Erp57 Length = 113

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 21/91 (23%), Positives = 41/91 (45%), Gaps = 2/91 (2%)
Query: 28  LVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLL-VDVD 86
           L  T D ++ ++S+    G +++  F A WCG C+ +AP +   + +   ++ L  VD  
Sbjct: 4   LELTDDNFESRISDTGSAG-LMLVEFFAPWCGHCKRLAPEYEAAATRLKGIVPLAKVDCT 62
Query: 87  ELVEFSTSWDIKATPTFFFLKDGQQVDKLVG 117
                   + +   PT    +DG++     G
Sbjct: 63  ANTNTCNKYGVSGYPTLKIFRDGEEAGAYDG 93

>pdb|2DMM|A Chain A, The Solution Structure Of The Second Thioredoxin Domain Of Human Protein Disulfide-Isomerase A3 Length = 142

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 19/66 (28%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 43  SKEGKIVIANFSATWCGPCRMIAPFFSELSEKY---PSLMFLLVDVDELVEFSTSWDIKA 99
           + E K V+  F A WCG C+ + P + EL EK    P+++   +D     +  + ++++ 
Sbjct: 42  NNENKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDA-TANDVPSPYEVRG 100
Query: 100 TPTFFF 105
            PT +F
Sbjct: 101 FPTIYF 106

>pdb|3F8U|A Chain A, TapasinERP57 HETERODIMER Length = 481

Iteration: 1
 Score = 40.0 bits (92), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 19/66 (28%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 43  SKEGKIVIANFSATWCGPCRMIAPFFSELSEKY---PSLMFLLVDVDELVEFSTSWDIKA 99
           + E K V+  F A WCG C+ + P + EL EK    P+++   +D     +  + ++++ 
Sbjct: 367 NNENKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDA-TANDVPSPYEVRG 425
Query: 100 TPTFFF 105
            PT +F
Sbjct: 426 FPTIYF 431

>pdb|2DJ3|A Chain A, The Solution Structure Of The Third Thioredoxin Domain Of Mouse Protein Disulfide-Isomerase A4 Length = 133

Iteration: 1
 Score = 40.0 bits (92), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 5/79 (6%)
Query: 47  KIVIANFSATWCGPCRMIAPFFSELSEKYPS---LMFLLVDVDELVEFSTSWDIKATPTF 103
           K V+  F A WCG C+ + P ++ L +KY     L+   +D       +  + ++  PT 
Sbjct: 26  KDVLIEFYAPWCGHCKQLEPIYTSLGKKYKGQKDLVIAKMDATANDITNDQYKVEGFPTI 85
Query: 104 FFLKDGQQVD--KLVGANK 120
           +F   G + +  K  G N+
Sbjct: 86  YFAPSGDKKNPIKFEGGNR 104

>pdb|2DJ0|A Chain A, The Solution Structure Of The Thioredoxin Domain Of Human Thioredoxin-Related Transmembrane Protein 2 Length = 137

Iteration: 1
 Score = 40.0 bits (92), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/88 (29%), Positives = 40/88 (45%), Gaps = 13/88 (14%)
Query: 50  IANFSATWCGPCRMIAPFFSELSEKY--PSLMFLLVDVDELVEFSTSWDI------KATP 101
           I  F A W   C+  AP +++LS KY    L F  VDV    + ST + +      K  P
Sbjct: 30  IVEFFANWSNDCQSFAPIYADLSLKYNCTGLNFGKVDVGRYTDVSTRYKVSTSPLTKQLP 89
Query: 102 TFFFLKDGQQVDKLVGANKPELQKKVAA 129
           T    + G++  +     +P++ KK  A
Sbjct: 90  TLILFQGGKEAMR-----RPQIDKKGRA 112

>pdb|3UL3|B Chain B, Structural Insights Into Thioredoxin-2: A Component Of Malaria Parasite Protein Secretion Machinery Length = 128

Iteration: 1
 Score = 39.7 bits (91), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Query: 45  EGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLL-VDVDELVEFSTSWDIKATPTF 103
           +  +++  F A WC  C M +    +L + Y   ++LL VD+D+    +  + +K+ PT 
Sbjct: 41  KNTVIVLYFFAKWCQACTMQSTEMDKLQKYYGKRIYLLKVDLDKNESLARKFSVKSLPTI 100
Query: 104 FFLKDGQQV---DKLVGAN 119
             LK+   +   D  V +N
Sbjct: 101 ILLKNKTMLARKDHFVSSN 119

>pdb|1O73|A Chain A, Tryparedoxin From Trypanosoma Brucei Length = 144

Iteration: 1
 Score = 39.3 bits (90), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 17/38 (44%), Positives = 22/38 (57%)
Query: 38 KMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKY 75
          ++S  S  GK V   FSA+WC PCR   P  +E  EK+
Sbjct: 20 EVSLGSLVGKTVFLYFSASWCPPCRGFTPVLAEFYEKH 57

>pdb|3OR5|A Chain A, Crystal Structure Of Thiol:disulfide Interchange Protein, Thioredoxin Family Protein From Chlorobium Tepidum Tls Length = 165

Iteration: 1
 Score = 39.3 bits (90), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 26/49 (53%)
Query: 37 QKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDV 85
          +  S AS +GK  I NF ATWC PCR   P   ++ + + S  F  V +
Sbjct: 25 KPFSSASLKGKAYIVNFFATWCPPCRSEIPDXVQVQKTWASRGFTFVGI 73

>pdb|1KNG|A Chain A, Crystal Structure Of Ccmg Reducing Oxidoreductase At 1.14 A Length = 156

Iteration: 1
 Score = 39.3 bits (90), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 31/113 (27%), Positives = 46/113 (40%), Gaps = 25/113 (22%)
Query: 39  MSEASKEGKIVIANFSATWCGPCRMIAPFFSELSE-----------------------KY 75
           +  A+ +GK+ + N  A+WC PC   AP  +EL +                       +Y
Sbjct: 35  LDPAAFKGKVSLVNVWASWCVPCHDEAPLLTELGKDKRFQLVGINYKDAADNARRFLGRY 94
Query: 76  PSLMFLLVDVDELVEFSTSWDIKATP-TFFFLKDGQQVDKLVGANKPELQKKV 127
            +  F  V VD     S  W +   P TF   ++G  V KLVG   P+  + V
Sbjct: 95  GN-PFGRVGVDANGRASIEWGVYGVPETFVVGREGTIVYKLVGPITPDNLRSV 146

>pdb|2R2J|A Chain A, Crystal Structure Of Human Erp44 Length = 382

Iteration: 1
 Score = 39.3 bits (90), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 24/94 (25%), Positives = 47/94 (50%), Gaps = 12/94 (12%)
Query: 23  GGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELS----EKYPS- 77
           G  ++ + T++I D+ ++ A     + + NF A WC   + + P F E S    E++P+ 
Sbjct: 4   GSEITSLDTENI-DEILNNAD----VALVNFYADWCRFSQXLHPIFEEASDVIKEEFPNE 58
Query: 78  --LMFLLVDVDELVEFSTSWDIKATPTFFFLKDG 109
             ++F  VD D+  + +  + I   PT    ++G
Sbjct: 59  NQVVFARVDCDQHSDIAQRYRISKYPTLKLFRNG 92

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	139
3d22_A	139	TRXH4, thioredoxin H-type; electron transport, cyt	1e-58
1ti3_A	113	Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Popul	2e-49
1wmj_A	130	Thioredoxin H-type; structural genomics, program f	4e-49
1xfl_A	124	Thioredoxin H1; AT3G51030, structural genomics, pr	6e-49
2vm1_A	118	Thioredoxin, thioredoxin H isoform 1.; oxidoreduct	1e-48
2vlu_A	122	Thioredoxin, thioredoxin H isoform 2.; oxidoreduct	4e-48
1ep7_A	112	Thioredoxin CH1, H-type; electron transport; 2.10A	8e-47
3qfa_C	116	Thioredoxin; protein-protein complex, rossmann fol	2e-44
1gh2_A	107	Thioredoxin-like protein; redox-active center, ele	3e-44
2wz9_A	153	Glutaredoxin-3; protein binding; 1.55A {Homo sapie	6e-44
2vim_A	104	Thioredoxin, TRX; thioredoxin fold, oxidoreductase	6e-44
3m9j_A	105	Thioredoxin; oxidoreductase; 1.10A {Homo sapiens}	3e-43
1syr_A	112	Thioredoxin; SGPP, structural genomics, PSI, prote	7e-42
1xwb_A	106	Thioredoxin; dimerization, redox regulation, THI X	2e-41
1r26_A	125	Thioredoxin; redox-active disulfide, electron tran	4e-41
3f3q_A	109	Thioredoxin-1; His TAG, electron transport, cytopl	2e-40
2oe3_A	114	Thioredoxin-3; electron transport, alpha/beta sand	2e-40
2xc2_A	117	Thioredoxinn; oxidoreductase, protein disulfide re	3e-40
3d6i_A	112	Monothiol glutaredoxin-3; thioredoxin-like, electr	1e-39
3cxg_A	133	Putative thioredoxin; malaria, structural GEN oxid	1e-37
2j23_A	121	Thioredoxin; immune protein, autoreactivity, cross	3e-35
2pu9_C	111	TRX-F, thioredoxin F-type, chloroplast; protein-pr	2e-33
1faa_A	124	Thioredoxin F; electron transport; 1.85A {Spinacia	5e-33
2f51_A	118	Thioredoxin; electron transport; 1.90A {Trichomona	1e-31
2l6c_A	110	Thioredoxin; oxidoreductase; NMR {Desulfovibrio vu	2e-26
4euy_A	105	Uncharacterized protein; structural genomics, PSI-	1e-24
2es7_A	142	Q8ZP25_salty, putative thiol-disulfide isomerase a	7e-24
2kuc_A	130	Putative disulphide-isomerase; structural genomics	7e-23
2l57_A	126	Uncharacterized protein; structural genomics, unkn	7e-23
2e0q_A	104	Thioredoxin; electron transport; 1.49A {Sulfolobus	2e-22
3gix_A	149	Thioredoxin-like protein 4B; PRE-mRNA splicing, TX	3e-21
3p2a_A	148	Thioredoxin 2, putative thioredoxin-like protein;	2e-20
1v98_A	140	Thioredoxin; oxidoreductase, structural genomics,	2e-20
3emx_A	135	Thioredoxin; structural genomics, oxidoreductase,	6e-20
3gnj_A	111	Thioredoxin domain protein; APC92103, STR genomics	6e-20
3evi_A	118	Phosducin-like protein 2; alpha beta, 3-layer(ABA)	8e-20
3tco_A	109	Thioredoxin (TRXA-1); disulfide oxidoreductase, ox	2e-19
2ppt_A	155	Thioredoxin-2; thiredoxin, zinc finger, oxidoreduc	2e-19
3hz4_A	140	Thioredoxin; NYSGXRC, PSI-II, reduced form, protei	2e-19
2dbc_A	135	PDCL2, unnamed protein product; phosducin-like pro	2e-19
2yzu_A	109	Thioredoxin; redox protein, electron transport, st	3e-19
2l5l_A	136	Thioredoxin; structural genomics, electron transpo	5e-19
1w4v_A	119	Thioredoxin, mitochondrial; antioxidant enzyme, mi	7e-19
1nsw_A	105	Thioredoxin, TRX; thermostability, electron transp	7e-19
1a0r_P	245	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	8e-19
3ul3_B	128	Thioredoxin, thioredoxin-2; PTEX, oxidoreductase;	1e-18
3die_A	106	Thioredoxin, TRX; electron transport, SWAP domain,	1e-18
2voc_A	112	Thioredoxin; electron transport, homodimer, disulf	2e-18
2i1u_A	121	Thioredoxin, TRX, MPT46; redox protein, electron t	3e-18
3hxs_A	141	Thioredoxin, TRXP; electron transport; 2.00A {Bact	4e-18
2yj7_A	106	LPBCA thioredoxin; oxidoreductase; 1.65A {Syntheti	6e-18
1dby_A	107	Chloroplast thioredoxin M CH2; thioredoxin CH2, ch	6e-18
1fb6_A	105	Thioredoxin M; electron transport; 2.10A {Spinacia	8e-18
1thx_A	115	Thioredoxin, thioredoxin 2; oxido-reductase, elect	1e-17
2dj0_A	137	Thioredoxin-related transmembrane protein 2; AVLA2	1e-17
2i4a_A	107	Thioredoxin; acidophIle, disulfide exchange, oxido	2e-17
1t00_A	112	Thioredoxin, TRX; redox regulation, multifunction	2e-17
2trx_A	108	Thioredoxin; electron transport; 1.68A {Escherichi	5e-17
2o8v_B	128	Thioredoxin 1; disulfide crosslinked complex, oxid	6e-17
1fo5_A	85	Thioredoxin; disulfide oxidoreductase, structural	5e-16
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	1e-15
2trc_P	217	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	2e-15
1lu4_A	136	Soluble secreted antigen MPT53; thioredoxin-like f	5e-15
3dxb_A	222	Thioredoxin N-terminally fused to PUF60(UHM); spli	6e-15
2f9s_A	151	Thiol-disulfide oxidoreductase RESA; thioredoxin-l	9e-14
3or5_A	165	Thiol:disulfide interchange protein, thioredoxin p	1e-13
2hyx_A	352	Protein DIPZ; thioredoxin fold, jelly-roll, struct	3e-13
1sen_A	164	Thioredoxin-like protein P19; endoplasmic reticulu	4e-13
1zzo_A	136	RV1677; thioredoxin fold, structural genomics, PSI	5e-13
1nho_A	85	Probable thioredoxin; beta sheet, alpha helix, oxi	5e-13
1oaz_A	123	Thioredoxin 1; immune system, antibody/complex, an	8e-13
3aps_A	122	DNAJ homolog subfamily C member 10; thioredoxin fo	1e-12
2fwh_A	134	Thiol:disulfide interchange protein DSBD; thioredo	1e-12
1a8l_A	226	Protein disulfide oxidoreductase; PDI, thioredoxin	2e-12
3hdc_A	158	Thioredoxin family protein; ATCC53774, DSM 7210, ,	2e-12
3ha9_A	165	Uncharacterized thioredoxin-like protein; PSI, MCS	2e-12
2l5o_A	153	Putative thioredoxin; structural genomics, unknown	2e-12
3gl3_A	152	Putative thiol:disulfide interchange protein DSBE;	2e-12
2lja_A	152	Putative thiol-disulfide oxidoreductase; structura	2e-12
3erw_A	145	Sporulation thiol-disulfide oxidoreductase A; thio	4e-12
2b5x_A	148	YKUV protein, TRXY; thioredoxin-like, oxidoreducta	5e-12
2lst_A	130	Thioredoxin; structural genomics, NEW YORK structu	5e-12
4fo5_A	143	Thioredoxin-like protein; AHPC/TSA family protein,	7e-12
3kcm_A	154	Thioredoxin family protein; SGX, thioredoxin prote	8e-12
2lrn_A	152	Thiol:disulfide interchange protein; structural ge	9e-12
1zma_A	118	Bacterocin transport accessory protein; alpha-beta	1e-11
3hcz_A	148	Possible thiol-disulfide isomerase; APC61559.2, cy	1e-11
2h30_A	164	Thioredoxin, peptide methionine sulfoxide reductas	2e-11
4evm_A	138	Thioredoxin family protein; structural genomics, n	2e-11
3lwa_A	183	Secreted thiol-disulfide isomerase; thioredoxin, P	3e-11
3fkf_A	148	Thiol-disulfide oxidoreductase; structural genomic	4e-11
3dml_A	116	Putative uncharacterized protein; thioredoxin, oxi	4e-11
2lrt_A	152	Uncharacterized protein; structural genomics, thio	6e-11
3raz_A	151	Thioredoxin-related protein; structural genomics,	6e-11
3ia1_A	154	THIO-disulfide isomerase/thioredoxin; oxidoreducta	1e-10
1jfu_A	186	Thiol:disulfide interchange protein TLPA; thioredo	1e-10
1o73_A	144	Tryparedoxin; electron transport, trypanosomatid,	1e-10
1o8x_A	146	Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrot	3e-10
2lus_A	143	Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carci	4e-10
1i5g_A	144	Tryparedoxin II; electron transport; HET: TS5; 1.4	7e-10
3s9f_A	165	Tryparedoxin; thioredoxin fold, disulfide reductas	1e-09
3ph9_A	151	Anterior gradient protein 3 homolog; thioredoxin f	2e-09
3ewl_A	142	Uncharacterized conserved protein BF1870; alpha-be	2e-09
3fw2_A	150	Thiol-disulfide oxidoreductase; structural genomic	2e-09
2ls5_A	159	Uncharacterized protein; structural genomics, unkn	2e-09
1z6n_A	167	Hypothetical protein PA1234; alpha-beta-alpha sand	2e-09
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	3e-09
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	7e-09
3eyt_A	158	Uncharacterized protein SPOA0173; thioredoxin-like	3e-09
3fk8_A	133	Disulphide isomerase; APC61824.1, xylella fastidio	5e-09
3eur_A	142	Uncharacterized protein; PSI2,MCSG, conserved prot	6e-09
2qsi_A	137	Putative hydrogenase expression/formation protein;	2e-08
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	2e-08
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	1e-06
1x5d_A	133	Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC	3e-08
2dj1_A	140	Protein disulfide-isomerase A4; protein ERP-72, ER	3e-08
1wou_A	123	Thioredoxin -related protein, 14 kDa; electron tra	6e-08
1x5e_A	126	Thioredoxin domain containing protein 1; TMX, TXND	8e-08
2av4_A	160	Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECI	9e-08
3lor_A	160	Thiol-disulfide isomerase and thioredoxins; PSI, M	9e-08
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	1e-07
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	5e-07
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	8e-06
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	1e-05
2dlx_A	153	UBX domain-containing protein 7; UAS domain, prote	2e-07
1mek_A	120	Protein disulfide isomerase; electron transport, r	2e-07
3qcp_A	470	QSOX from trypanosoma brucei (tbqsox); ERV fold, t	4e-07
2dj3_A	133	Protein disulfide-isomerase A4; protein ERP-72, ER	5e-07
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	6e-07
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	2e-06
3uvt_A	111	Thioredoxin domain-containing protein 5; thioredox	8e-07
2dml_A	130	Protein disulfide-isomerase A6; thioredoxin domain	8e-07
3kh7_A	176	Thiol:disulfide interchange protein DSBE; TRX-like	2e-06
3ed3_A	298	Protein disulfide-isomerase MPD1; thioredoxin-like	3e-06
3uem_A	361	Protein disulfide-isomerase; thioredoxin-like doma	5e-06
1kng_A	156	Thiol:disulfide interchange protein CYCY; thioredo	1e-05
2r2j_A	382	Thioredoxin domain-containing protein 4; CRFS moti	2e-05
2b1k_A	168	Thiol:disulfide interchange protein DSBE; C-termin	2e-05
2ju5_A	154	Thioredoxin disulfide isomerase; protein, oxidored	2e-05
3h79_A	127	Thioredoxin-like protein; thioredoxin fold, cataly	3e-05
2ywm_A	229	Glutaredoxin-like protein; redox protein, structur	3e-05
2ywm_A	229	Glutaredoxin-like protein; redox protein, structur	7e-05
3q6o_A	244	Sulfhydryl oxidase 1; protein disulfide isomerase,	3e-05
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	6e-05
3t58_A	519	Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.	8e-05
2djj_A	121	PDI, protein disulfide-isomerase; thioredoxin fold	1e-04
3us3_A	367	Calsequestrin-1; calcium-binding protein; 1.74A {O	2e-04
2qgv_A	140	Hydrogenase-1 operon protein HYAE; alpha-beta prot	2e-04
1sji_A	350	Calsequestrin 2, calsequestrin, cardiac muscle iso	3e-04

>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A Length = 139

 Score =  177 bits (450), Expect = 1e-58
 Identities = 99/139 (71%), Positives = 118/139 (84%)

Query: 1   MGTCLSKRQHDEEDGEHPVEFAGGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGP 60
           MG CL+KR HD +D E  +E AGGNV L+TTK+ WDQK+SEAS++GKIV+ANFSA WCGP
Sbjct: 1   MGLCLAKRNHDADDDEPHIELAGGNVHLITTKERWDQKLSEASRDGKIVLANFSARWCGP 60

Query: 61  CRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANK 120
            R IAP++ ELSE YPSLMFL++DVDEL +FS SW+IKATPTFFFL+DGQQVDKLVGANK
Sbjct: 61  SRQIAPYYIELSENYPSLMFLVIDVDELSDFSASWEIKATPTFFFLRDGQQVDKLVGANK 120

Query: 121 PELQKKVAAAVDSVVPSQK 139
           PEL KK+ A +DS+ PS K
Sbjct: 121 PELHKKITAILDSLPPSDK 139

>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1 Length = 113

 Score =  152 bits (387), Expect = 2e-49
 Identities = 49/110 (44%), Positives = 71/110 (64%)

Query: 24  GNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLV 83
           G V    T D W +   +     K+++ +F+A+WC PC+MIAP F+EL++K+P++ FL V
Sbjct: 4   GQVIACHTVDTWKEHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFPNVTFLKV 63

Query: 84  DVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKVAAAVDS 133
           DVDEL   +  W+++A PTF FLKDG+ VDK VGA+K  L   VA    +
Sbjct: 64  DVDELKAVAEEWNVEAMPTFIFLKDGKLVDKTVGADKDGLPTLVAKHATA 113

>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa} Length = 130

 Score =  152 bits (386), Expect = 4e-49
 Identities = 53/123 (43%), Positives = 79/123 (64%)

Query: 12  EEDGEHPVEFAGGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSEL 71
               E  +    G V     KD +D +M++A + GK+VI +F+A+WCGPCR IAP F+E 
Sbjct: 2   PMAAEEGMAAEEGVVIACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEY 61

Query: 72  SEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKVAAAV 131
           ++K+P  +FL VDVDEL E +  ++++A PTF F+KDG + DK+VGA K +LQ  +   V
Sbjct: 62  AKKFPGAVFLKVDVDELKEVAEKYNVEAMPTFLFIKDGAEADKVVGARKDDLQNTIVKHV 121

Query: 132 DSV 134
            + 
Sbjct: 122 GAT 124

>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1 Length = 124

 Score =  152 bits (385), Expect = 6e-49
 Identities = 52/118 (44%), Positives = 81/118 (68%), Gaps = 2/118 (1%)

Query: 14  DGEHPVEFAG--GNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSEL 71
              H +E A   G V    T + W++++ +A++   +V+ +F+A+WCGPCR IAPFF++L
Sbjct: 4   HHHHHLEMASEEGQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADL 63

Query: 72  SEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKVAA 129
           ++K P+++FL VD DEL   ++ W I+A PTF FLK+G+ +DK+VGA K ELQ  +A 
Sbjct: 64  AKKLPNVLFLKVDTDELKSVASDWAIQAMPTFMFLKEGKILDKVVGAKKDELQSTIAK 121

>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A Length = 118

 Score =  151 bits (383), Expect = 1e-48
 Identities = 49/110 (44%), Positives = 76/110 (69%)

Query: 24  GNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLV 83
           G V    TK  +D  M+     GK+VI +F+A+WCGPCR+IAP F+E ++K+P  +FL V
Sbjct: 6   GAVIACHTKQEFDTHMANGKDTGKLVIIDFTASWCGPCRVIAPVFAEYAKKFPGAIFLKV 65

Query: 84  DVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKVAAAVDS 133
           DVDEL + + +++++A PTF F+KDG++VD +VG  K ++  K+ A + S
Sbjct: 66  DVDELKDVAEAYNVEAMPTFLFIKDGEKVDSVVGGRKDDIHTKIVALMGS 115

>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A* Length = 122

 Score =  149 bits (379), Expect = 4e-48
 Identities = 45/112 (40%), Positives = 73/112 (65%)

Query: 22  AGGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFL 81
               V  V + + W  ++ EA+   K+V+ +F+A+WCGPCR++AP F++L++K+P+ +FL
Sbjct: 10  VAAEVISVHSLEQWTMQIEEANTAKKLVVIDFTASWCGPCRIMAPVFADLAKKFPNAVFL 69

Query: 82  LVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKVAAAVDS 133
            VDVDEL   +  + ++A PTF F+K+G   D++VGA K EL  KV     +
Sbjct: 70  KVDVDELKPIAEQFSVEAMPTFLFMKEGDVKDRVVGAIKEELTAKVGLHAAA 121

>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A Length = 112

 Score =  146 bits (370), Expect = 8e-47
 Identities = 46/112 (41%), Positives = 71/112 (63%), Gaps = 1/112 (0%)

Query: 23  GGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP-SLMFL 81
           GG+V ++ +K  WD ++++  +E K ++ +F+ATWCGPC+MIAP F  LS  Y   ++FL
Sbjct: 1   GGSVIVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFL 60

Query: 82  LVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKVAAAVDS 133
            VDVD +   + +  I A PTF   KDG + D LVGA++ +L+  VA    +
Sbjct: 61  KVDVDAVAAVAEAAGITAMPTFHVYKDGVKADDLVGASQDKLKALVAKHAAA 112

>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C* Length = 116

 Score =  140 bits (355), Expect = 2e-44
 Identities = 45/108 (41%), Positives = 70/108 (64%), Gaps = 2/108 (1%)

Query: 24  GNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLV 83
           G+V  + +K  + + +  A    K+V+ +FSATWCGP +MI PFF  LSEKY +++FL V
Sbjct: 11  GSVKQIESKTAFQEALDAAG--DKLVVVDFSATWCGPSKMIKPFFHSLSEKYSNVIFLEV 68

Query: 84  DVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKVAAAV 131
           DVD+  + ++  ++K+ PTF F K GQ+V +  GANK +L+  +   V
Sbjct: 69  DVDDCQDVASECEVKSMPTFQFFKKGQKVGEFSGANKEKLEATINELV 116

>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1 Length = 107

 Score =  139 bits (352), Expect = 3e-44
 Identities = 35/107 (32%), Positives = 60/107 (56%), Gaps = 2/107 (1%)

Query: 26  VSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDV 85
           V  V +   +  ++S A    ++ +  F+   CGPC  IAP FS +S KYP  +FL VDV
Sbjct: 3   VKPVGSDPDFQPELSGAG--SRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDV 60

Query: 86  DELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKVAAAVD 132
            +    + + +I ATPTF F ++  ++D+  GA+   L++K+   ++
Sbjct: 61  HQCQGTAATNNISATPTFQFFRNKVRIDQYQGADAVGLEEKIKQHLE 107

>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A Length = 153

 Score =  140 bits (354), Expect = 6e-44
 Identities = 33/118 (27%), Positives = 62/118 (52%), Gaps = 2/118 (1%)

Query: 20  EFAGGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLM 79
           E A   V  V +   +++ +   +K   +++ +F A W   C  +    +EL+++ P + 
Sbjct: 8   EAAVAAVEEVGSAGQFEELLRLKAK--SLLVVHFWAPWAPQCAQMNEVMAELAKELPQVS 65

Query: 80  FLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKVAAAVDSVVPS 137
           F+ ++ + + E S  ++I + PTF F K+ Q++D+L GA+ PEL KKV     S    
Sbjct: 66  FVKLEAEGVPEVSEKYEISSVPTFLFFKNSQKIDRLDGAHAPELTKKVQRHASSGSFL 123

>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica} Length = 104

 Score =  138 bits (350), Expect = 6e-44
 Identities = 36/103 (34%), Positives = 65/103 (63%), Gaps = 2/103 (1%)

Query: 26  VSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDV 85
           + ++ T    ++ ++E    G++++ +F A WCGPCR IAP    L+++ P + F  VDV
Sbjct: 1   MRVLATAADLEKLINENK--GRLIVVDFFAQWCGPCRNIAPKVEALAKEIPEVEFAKVDV 58

Query: 86  DELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKVA 128
           D+  E +  + + A PTF F+KDG++VD+  GAN+ +L++ + 
Sbjct: 59  DQNEEAAAKYSVTAMPTFVFIKDGKEVDRFSGANETKLRETIT 101

>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ... Length = 105

 Score =  137 bits (346), Expect = 3e-43
 Identities = 45/106 (42%), Positives = 69/106 (65%), Gaps = 2/106 (1%)

Query: 26  VSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDV 85
           V  + +K  + + +  A    K+V+ +FSATWCGPC+MI PFF  LSEKY +++FL VDV
Sbjct: 2   VKQIESKTAFQEALDAAG--DKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDV 59

Query: 86  DELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKVAAAV 131
           D+  + ++  ++K+ PTF F K GQ+V +  GANK +L+  +   V
Sbjct: 60  DDCQDVASESEVKSMPTFQFFKKGQKVGEFSGANKEKLEATINELV 105

>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1 Length = 112

 Score =  133 bits (338), Expect = 7e-42
 Identities = 40/105 (38%), Positives = 64/105 (60%), Gaps = 4/105 (3%)

Query: 24  GNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLV 83
             V +VT++  +D  +     + ++VI +F A WCGPC+ IAPF+ E S+ Y  ++F+ V
Sbjct: 8   HMVKIVTSQAEFDSII----SQNELVIVDFFAEWCGPCKRIAPFYEECSKTYTKMVFIKV 63

Query: 84  DVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKVA 128
           DVDE+ E +   +I + PTF   K+G  VD L+GAN   L++ + 
Sbjct: 64  DVDEVSEVTEKENITSMPTFKVYKNGSSVDTLLGANDSALKQLIE 108

>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A Length = 106

 Score =  132 bits (334), Expect = 2e-41
 Identities = 43/107 (40%), Positives = 68/107 (63%), Gaps = 3/107 (2%)

Query: 26  VSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVD 84
           V  V  K   D ++++AS  GK+V+ +F ATWCGPC+MI+P   ELS ++   ++ L VD
Sbjct: 2   VYQVKDKADLDGQLTKAS--GKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVD 59

Query: 85  VDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKVAAAV 131
           VDE  + +  ++I + PTF FLK+G +V++  GAN   L+  + A +
Sbjct: 60  VDECEDIAMEYNISSMPTFVFLKNGVKVEEFAGANAKRLEDVIKANI 106

>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1 Length = 125

 Score =  132 bits (334), Expect = 4e-41
 Identities = 28/110 (25%), Positives = 54/110 (49%), Gaps = 4/110 (3%)

Query: 24  GNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLV 83
            +V  V + + +   M     E  + +A F+A WCGPC+ I     +++ ++P++ F  V
Sbjct: 19  PSVVDVYSVEQFRNIM----SEDILTVAWFTAVWCGPCKTIERPMEKIAYEFPTVKFAKV 74

Query: 84  DVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKVAAAVDS 133
           D D   E  +   +   PTF   + G+ +  ++GAN   L++K+   +  
Sbjct: 75  DADNNSEIVSKCRVLQLPTFIIARSGKMLGHVIGANPGMLRQKLRDIIKD 124

>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B Length = 109

 Score =  129 bits (327), Expect = 2e-40
 Identities = 40/104 (38%), Positives = 63/104 (60%), Gaps = 4/104 (3%)

Query: 26  VSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDV 85
           V+   T   +D  +     + K+V+ +F ATWCGPC+MIAP   + SE+YP   F  +DV
Sbjct: 8   VTQFKTASEFDSAI----AQDKLVVVDFYATWCGPCKMIAPMIEKFSEQYPQADFYKLDV 63

Query: 86  DELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKVAA 129
           DEL + +   ++ A PT    K+G++V K+VGAN   +++ +AA
Sbjct: 64  DELGDVAQKNEVSAMPTLLLFKNGKEVAKVVGANPAAIKQAIAA 107

>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A Length = 114

 Score =  130 bits (328), Expect = 2e-40
 Identities = 34/108 (31%), Positives = 61/108 (56%), Gaps = 4/108 (3%)

Query: 22  AGGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFL 81
           +  +++ +T    +   +    K+   ++ +F ATWCGPC+M+ P  ++L + YP + F+
Sbjct: 10  SYTSITKLTNLTEFRNLI----KQNDKLVIDFYATWCGPCKMMQPHLTKLIQAYPDVRFV 65

Query: 82  LVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKVAA 129
             DVDE  + +   ++ A PTF   KDGQ + K++GAN   L+K +  
Sbjct: 66  KCDVDESPDIAKECEVTAMPTFVLGKDGQLIGKIIGANPTALEKGIKD 113

>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A Length = 117

 Score =  129 bits (327), Expect = 3e-40
 Identities = 38/108 (35%), Positives = 64/108 (59%), Gaps = 3/108 (2%)

Query: 24  GNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLV 83
             +  +      +  + +     K+V+ +F ATWCGPC+ IAP F ELSEKY   +F+ V
Sbjct: 13  SELIELKQDGDLESLLEQHK--NKLVVVDFFATWCGPCKTIAPLFKELSEKYD-AIFVKV 69

Query: 84  DVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKVAAAV 131
           DVD+L E +  ++I A PTF  +K+G++V  +VGA+  +++  +   +
Sbjct: 70  DVDKLEETARKYNISAMPTFIAIKNGEKVGDVVGASIAKVEDMIKKFI 117

>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae} Length = 112

 Score =  128 bits (323), Expect = 1e-39
 Identities = 27/111 (24%), Positives = 53/111 (47%), Gaps = 3/111 (2%)

Query: 26  VSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKY--PSLMFLLV 83
           V  +  ++ +    + A+ + K+++  F  +W  PC+ +   F  +S +    ++ FL +
Sbjct: 2   VIEINDQEQFTYLTTTAAGD-KLIVLYFHTSWAEPCKALKQVFEAISNEPSNSNVSFLSI 60

Query: 84  DVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKVAAAVDSV 134
           D DE  E S  ++I A P F  +  G  + +L GA+  E    +    +SV
Sbjct: 61  DADENSEISELFEISAVPYFIIIHKGTILKELSGADPKEYVSLLEDCKNSV 111

>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum} Length = 133

 Score =  124 bits (312), Expect = 1e-37
 Identities = 29/123 (23%), Positives = 48/123 (39%), Gaps = 8/123 (6%)

Query: 10  HDEEDGEHPVEF-AGGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFF 68
           H    G   + F        +      +Q  S    +   ++  F A WC PC  I  +F
Sbjct: 5   HHHSSGRENLYFQGQSIYIELKNTGSLNQVFSST--QNSSIVIKFGAVWCKPCNKIKEYF 62

Query: 69  SELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQ----VDKLVGANKPELQ 124
                 Y  +  + +DVD   + +   +IKA PTF F  +       V  + GAN+ +++
Sbjct: 63  KNQLNYY-YVTLVDIDVDIHPKLNDQHNIKALPTFEFYFNLNNEWVLVHTVEGANQNDIE 121

Query: 125 KKV 127
           K  
Sbjct: 122 KAF 124

>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis} Length = 121

 Score =  117 bits (294), Expect = 3e-35
 Identities = 40/115 (34%), Positives = 66/115 (57%), Gaps = 6/115 (5%)

Query: 16  EHPVEFAGGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKY 75
            H      G+V ++++ D +     + +   K+V+ +F ATWCGPC+MI P F ++S+  
Sbjct: 7   HHHHLVPRGSVQVISSYDQFK----QVTGGDKVVVIDFWATWCGPCKMIGPVFEKISDTP 62

Query: 76  PS--LMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKVA 128
               + F  VDVDE  + +    I+A PTF F K+GQ++D +VGA+  +LQ  + 
Sbjct: 63  AGDKVGFYKVDVDEQSQIAQEVGIRAMPTFVFFKNGQKIDTVVGADPSKLQAAIT 117

>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A Length = 111

 Score =  112 bits (282), Expect = 2e-33
 Identities = 30/101 (29%), Positives = 52/101 (51%), Gaps = 3/101 (2%)

Query: 31  TKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVD-ELV 89
            KD +   +  A    K V+ +    WCGP + +AP + +L+E+Y  ++FL +D + E  
Sbjct: 11  NKDTFWPIVKAAGD--KPVVLDMFTQWCGPSKAMAPKYEKLAEEYLDVIFLKLDCNQENK 68

Query: 90  EFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKVAAA 130
             +    I+  PTF  LK+   V ++ GA   +L + + AA
Sbjct: 69  TLAKELGIRVVPTFKILKENSVVGEVTGAKYDKLLEAIQAA 109

>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1 Length = 124

 Score =  111 bits (280), Expect = 5e-33
 Identities = 31/101 (30%), Positives = 53/101 (52%), Gaps = 3/101 (2%)

Query: 31  TKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVD-ELV 89
            KD +   +  A    K V+ +    WCGPC+ +AP + +L+E+Y  ++FL +D + E  
Sbjct: 24  NKDTFWPIVKAAGD--KPVVLDMFTQWCGPCKAMAPKYEKLAEEYLDVIFLKLDCNQENK 81

Query: 90  EFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKVAAA 130
             +    I+  PTF  LK+   V ++ GA   +L + + AA
Sbjct: 82  TLAKELGIRVVPTFKILKENSVVGEVTGAKYDKLLEAIQAA 122

>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis} Length = 118

 Score =  108 bits (271), Expect = 1e-31
 Identities = 24/104 (23%), Positives = 51/104 (49%), Gaps = 4/104 (3%)

Query: 29  VTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDEL 88
           V      +  ++   +   +V+ +F ATWCGPC+ +      ++E    + F+ VDVD+ 
Sbjct: 6   VHFNGTHEALLNRIKEAPGLVLVDFFATWCGPCQRLGQILPSIAEANKDVTFIKVDVDKN 65

Query: 89  VEFSTSWDIKATPTFFFLKDG----QQVDKLVGANKPELQKKVA 128
              + ++ + + P  FF+K      + +D+ VGA+   ++  + 
Sbjct: 66  GNAADAYGVSSIPALFFVKKEGNEIKTLDQFVGADVSRIKADIE 109

>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A Length = 110

 Score = 94.7 bits (236), Expect = 2e-26
 Identities = 21/101 (20%), Positives = 35/101 (34%), Gaps = 1/101 (0%)

Query: 30  TTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELV 89
             +DI  +      +     I  F    C  C+ +     +   + P +    VD +   
Sbjct: 3   AIRDITTEAGMAHFEGLSDAIVFFHKNLCPHCKNMEKVLDKFGARAPQVAISSVDSEARP 62

Query: 90  EFSTSWDIKATPTFFFLKDGQQVDKLVGA-NKPELQKKVAA 129
           E       +  PT  F++DG+      G  N  ELQ   A+
Sbjct: 63  ELMKELGFERVPTLVFIRDGKVAKVFSGIMNPRELQALYAS 103

>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus} Length = 105

 Score = 89.6 bits (223), Expect = 1e-24
 Identities = 12/85 (14%), Positives = 38/85 (44%), Gaps = 1/85 (1%)

Query: 44  KEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTF 103
           +E ++V+       CG C ++    + + E Y  +  + + + ++ E +  + +   PT 
Sbjct: 16  EEQQLVLLFIKTENCGVCDVMLRKVNYVLENYNYVEKIEILLQDMQEIAGRYAVFTGPTV 75

Query: 104 FFLKDGQQVDKLVGA-NKPELQKKV 127
               +G+++ +     +   L++ +
Sbjct: 76  LLFYNGKEILRESRFISLENLERTI 100

>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A Length = 142

 Score = 89.1 bits (221), Expect = 7e-24
 Identities = 16/112 (14%), Positives = 42/112 (37%), Gaps = 8/112 (7%)

Query: 30  TTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLL--VDVDE 87
           +T D W +++ +      +++ +                +EL  ++P   + +   D+++
Sbjct: 25  STVDDWIKRVGD-----GVILLSSDPRRTPEVSDNPVMIAELLREFPQFDWQVAVADLEQ 79

Query: 88  LVEFSTSWDIKATPTFFFLKDGQQVDKLVGA-NKPELQKKVAAAVDSVVPSQ 138
                  ++++  P      DG+    L G     EL   + + VD+    +
Sbjct: 80  SEAIGDRFNVRRFPATLVFTDGKLRGALSGIHPWAELLTLMRSIVDTPAAQE 131

>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron} Length = 130

 Score = 86.0 bits (213), Expect = 7e-23
 Identities = 35/111 (31%), Positives = 56/111 (50%), Gaps = 8/111 (7%)

Query: 31  TKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAP--FFSELSEKYPSLMFLLVDVD-- 86
            +  + + +  A  E K++  +   TWCGPC+ ++   F   L   Y +  F+ + +D  
Sbjct: 12  RELSFPEALKRAEVEDKLLFVDCFTTWCGPCKRLSKVVFKDSLVADYFNRHFVNLKMDME 71

Query: 87  --ELVEFSTSWDIKATPTFFFLK-DGQQVDKLVGA-NKPELQKKVAAAVDS 133
             E VE    + + A PT  F+   G+ V +LVGA + PEL KKV   V+S
Sbjct: 72  KGEGVELRKKYGVHAYPTLLFINSSGEVVYRLVGAEDAPELLKKVKLGVES 122

>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens} Length = 126

 Score = 86.0 bits (213), Expect = 7e-23
 Identities = 19/114 (16%), Positives = 46/114 (40%), Gaps = 5/114 (4%)

Query: 22  AGGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP---SL 78
           +   +  +  + I   +  E +KEG   I  F    C  C  +    S +S++     ++
Sbjct: 2   SLEGIKQINFQSINVVENLEEAKEGIPTIIMFKTDTCPYCVEMQKELSYVSKEREGKFNI 61

Query: 79  MFLLVDVDELVEFSTSWDIKATPTF-FFLKDGQQVDKLVGA-NKPELQKKVAAA 130
            +  ++ ++ ++ +  +D    PT  F  K+G +     G   K  ++  + + 
Sbjct: 62  YYARLEEEKNIDLAYKYDANIVPTTVFLDKEGNKFYVHQGLMRKNNIETILNSL 115

>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A Length = 104

 Score = 84.3 bits (209), Expect = 2e-22
 Identities = 28/97 (28%), Positives = 53/97 (54%), Gaps = 1/97 (1%)

Query: 36  DQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSW 95
            +         +I + +F A WC PC ++AP   EL+E YP + F  ++ DE  + +  +
Sbjct: 6   SKNFDSFLASHEIAVVDFWAEWCAPCLILAPIIEELAEDYPQVGFGKLNSDENPDIAARY 65

Query: 96  DIKATPTFFFLKDGQQVDKLVGA-NKPELQKKVAAAV 131
            + + PT  F KDG+ VD+++GA  + E++ ++   +
Sbjct: 66  GVMSLPTVIFFKDGEPVDEIIGAVPREEIEIRIKNLL 102

>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} PDB: 1xbs_A Length = 149

 Score = 82.3 bits (203), Expect = 3e-21
 Identities = 20/100 (20%), Positives = 36/100 (36%), Gaps = 1/100 (1%)

Query: 24  GNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLL 82
           G+  L       +   +  S   K+++  F       C  +    S+ S          L
Sbjct: 1   GSFLLPKLTSKKEVDQAIKSTAEKVLVLRFGRDEDPVCLQLDDILSKTSSDLSKMAAIYL 60

Query: 83  VDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPE 122
           VDVD+   ++  +DI   P+  F  +GQ +    G+    
Sbjct: 61  VDVDQTAVYTQYFDISYIPSTVFFFNGQHMKVDYGSPDHT 100

>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis} Length = 148

 Score = 80.6 bits (199), Expect = 2e-20
 Identities = 25/98 (25%), Positives = 49/98 (50%), Gaps = 2/98 (2%)

Query: 36  DQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKY-PSLMFLLVDVDELVEFSTS 94
            + + +  ++   ++ +F A WCGPCR  AP F+E + +    + F+ V+ +     ST 
Sbjct: 45  AETLDKLLQDDLPMVIDFWAPWCGPCRSFAPIFAETAAERAGKVRFVKVNTEAEPALSTR 104

Query: 95  WDIKATPTFFFLKDGQQVDKLVGA-NKPELQKKVAAAV 131
           + I++ PT    ++G+ +D L GA  K      +   +
Sbjct: 105 FRIRSIPTIMLYRNGKMIDMLNGAVPKAPFDNWLDEQL 142

>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus} Length = 140

 Score = 80.1 bits (198), Expect = 2e-20
 Identities = 24/91 (26%), Positives = 47/91 (51%), Gaps = 2/91 (2%)

Query: 45  EGKIVIANFSATWCGPCRMIAPFFSELSEKY-PSLMFLLVDVDELVEFSTSWDIKATPTF 103
              + + +F A WCGPCR+++P   EL+  +   L  + V+VDE    +  + +++ PT 
Sbjct: 49  GAPLTLVDFFAPWCGPCRLVSPILEELARDHAGRLKVVKVNVDEHPGLAARYGVRSVPTL 108

Query: 104 FFLKDGQQVDKLVGA-NKPELQKKVAAAVDS 133
              + G  V   VGA  +  L++++   ++ 
Sbjct: 109 VLFRRGAPVATWVGASPRRVLEERLRPYLEG 139

>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix} Length = 135

 Score = 78.7 bits (194), Expect = 6e-20
 Identities = 20/104 (19%), Positives = 37/104 (35%), Gaps = 11/104 (10%)

Query: 33  DIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKY--------PSLMFLLVD 84
            I  ++  +  +   I+     +  C  C    P   + S++            +    +
Sbjct: 20  YITPEEFRQLLQGDAIL--AVYSKTCPHCHRDWPQLIQASKEVDVPIVMFIWGSLIGERE 77

Query: 85  VDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGAN-KPELQKKV 127
           +           ++ TPT  F K+G+ VDKLVGA       +K 
Sbjct: 78  LSAARLEMNKAGVEGTPTLVFYKEGRIVDKLVGATPWSLKVEKA 121

>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} Length = 111

 Score = 78.1 bits (193), Expect = 6e-20
 Identities = 26/95 (27%), Positives = 41/95 (43%), Gaps = 2/95 (2%)

Query: 40  SEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP-SLMFLLVDVDELVEFSTSWDIK 98
                EGK  +  FS   C  C+ + P   EL   Y  S  F  VDV+E       + +K
Sbjct: 16  QLIYDEGKACLVMFSRKNCHVCQKVTPVLEELRLNYEESFGFYYVDVEEEKTLFQRFSLK 75

Query: 99  ATPTFFFLKDGQQVDKLVGA-NKPELQKKVAAAVD 132
             P   + KDG+   K+ G     E+++ +A  ++
Sbjct: 76  GVPQILYFKDGEYKGKMAGDVEDDEVEQMIADVLE 110

>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens} Length = 118

 Score = 77.9 bits (192), Expect = 8e-20
 Identities = 19/94 (20%), Positives = 40/94 (42%), Gaps = 5/94 (5%)

Query: 24  GNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLV 83
           G +  ++    +  +++ A +    VI +   +    C ++    S L+ K+P   F+  
Sbjct: 3   GELREISGNQ-YVNEVTNAEE-DVWVIIHLYRSSIPMCLLVNQHLSLLARKFPETKFVKA 60

Query: 84  DVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVG 117
            V+  ++    +     PT F  K+GQ   K +G
Sbjct: 61  IVNSCIQ---HYHDNCLPTIFVYKNGQIEAKFIG 91

>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} Length = 109

 Score = 76.6 bits (189), Expect = 2e-19
 Identities = 29/103 (28%), Positives = 53/103 (51%), Gaps = 2/103 (1%)

Query: 31  TKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVDELV 89
           T  + ++   E  +  K+V+ +  A WC PC +  P + +++EKY    +F  ++VDE  
Sbjct: 6   TLVLTEENFDEVIRNNKLVLVDCWAEWCAPCHLYEPIYKKVAEKYKGKAVFGRLNVDENQ 65

Query: 90  EFSTSWDIKATPTFFFLKDGQQVDKLVGA-NKPELQKKVAAAV 131
           + +  + +   PT     +GQ VD LVGA ++  L+  V   +
Sbjct: 66  KIADKYSVLNIPTTLIFVNGQLVDSLVGAVDEDTLESTVNKYL 108

>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus} Length = 155

 Score = 77.9 bits (192), Expect = 2e-19
 Identities = 22/96 (22%), Positives = 40/96 (41%), Gaps = 2/96 (2%)

Query: 40  SEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKY-PSLMFLLVDVDELVEFSTSWDIK 98
           + A ++   ++ +F A WCGPCR +AP F   +      +    +D       +    I+
Sbjct: 58  ARAERDDLPLLVDFWAPWCGPCRQMAPQFQAAAATLAGQVRLAKIDTQAHPAVAGRHRIQ 117

Query: 99  ATPTFFFLKDGQQVDKLVGA-NKPELQKKVAAAVDS 133
             P F     G+++ +  GA    EL   V   + +
Sbjct: 118 GIPAFILFHKGRELARAAGARPASELVGFVRGKLGA 153

>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei} Length = 140

 Score = 77.5 bits (191), Expect = 2e-19
 Identities = 22/95 (23%), Positives = 43/95 (45%), Gaps = 2/95 (2%)

Query: 40  SEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP-SLMFLLVDVDELVEFSTSWDIK 98
            +     K V+  F +  C  C+ + P+F E +++Y  S +F  +++      +  + ++
Sbjct: 18  QQVEDSKKPVVVMFYSPACPYCKAMEPYFEEYAKEYGSSAVFGRINIATNPWTAEKYGVQ 77

Query: 99  ATPTFFFLKDGQQVDKLVGA-NKPELQKKVAAAVD 132
            TPTF F   G+ V + VG      L+  V   + 
Sbjct: 78  GTPTFKFFCHGRPVWEQVGQIYPSILKNAVRDMLQ 112

>2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus} Length = 135

 Score = 77.2 bits (190), Expect = 2e-19
 Identities = 20/94 (21%), Positives = 40/94 (42%), Gaps = 5/94 (5%)

Query: 24  GNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLV 83
           G +  ++    +  +++ A K    V+ +   +    C ++    S L+ K+P   F+  
Sbjct: 10  GELREISGNQ-YVNEVTNAEK-DLWVVIHLYRSSVPMCLVVNQHLSVLARKFPETKFVKA 67

Query: 84  DVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVG 117
            V+  +E    +     PT F  K+GQ   K +G
Sbjct: 68  IVNSCIE---HYHDNCLPTIFVYKNGQIEGKFIG 98

>2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A Length = 109

 Score = 76.2 bits (188), Expect = 3e-19
 Identities = 36/100 (36%), Positives = 55/100 (55%), Gaps = 2/100 (2%)

Query: 36  DQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP-SLMFLLVDVDELVEFSTS 94
           DQ   E   +  +V+ +F A WC PCRMIAP   E++++Y   L+   +DVDE  + +  
Sbjct: 8   DQNFDETLGQHPLVLVDFWAEWCAPCRMIAPILEEIAKEYEGKLLVAKLDVDENPKTAMR 67

Query: 95  WDIKATPTFFFLKDGQQVDKLVGA-NKPELQKKVAAAVDS 133
           + + + PT    KDGQ V+ LVGA  K   Q K+   + +
Sbjct: 68  YRVMSIPTVILFKDGQPVEVLVGAQPKRNYQAKIEKHLPA 107

>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus} Length = 136

 Score = 76.3 bits (188), Expect = 5e-19
 Identities = 26/102 (25%), Positives = 51/102 (50%), Gaps = 6/102 (5%)

Query: 40  SEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVDELVEFSTSWDIK 98
               +  K  I +F A WCGPC+M+AP   EL+++Y   ++   VD ++  E + ++ I+
Sbjct: 32  EWKYEGDKPAIVDFYADWCGPCKMVAPILDELAKEYDGQIVIYKVDTEKEQELAGAFGIR 91

Query: 99  ATPTFFFLKDGQQVDKLVGA-NKPELQKKVAAAVDSVVPSQK 139
           + P+  F+    + +   GA  K   +K     +D  +  ++
Sbjct: 92  SIPSILFIPMEGKPEMAQGAMPKASFKKA----IDEFLLKKE 129

>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A Length = 119

 Score = 75.5 bits (186), Expect = 7e-19
 Identities = 27/119 (22%), Positives = 56/119 (47%), Gaps = 5/119 (4%)

Query: 15  GEHPVEFAGGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEK 74
           G H     G     +     +  ++  +      V+ +F A WCGPC+++ P   ++  K
Sbjct: 3   GSHHHHHHGSTTFNIQDGPDFQDRVVNSETP---VVVDFHAQWCGPCKILGPRLEKMVAK 59

Query: 75  YP-SLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGA-NKPELQKKVAAAV 131
               ++   VD+D+  + +  +++ A PT   +K+G  VDK VG  ++ +L+  +   +
Sbjct: 60  QHGKVVMAKVDIDDHTDLAIEYEVSAVPTVLAMKNGDVVDKFVGIKDEDQLEAFLKKLI 118

>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A Length = 105

 Score = 75.0 bits (185), Expect = 7e-19
 Identities = 32/103 (31%), Positives = 55/103 (53%), Gaps = 2/103 (1%)

Query: 31  TKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP-SLMFLLVDVDELV 89
           T  + D    +A +    V+ +F A WCGPCRM+AP   E +E +   +    ++VDE  
Sbjct: 2   TMTLTDANFQQAIQGDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENP 61

Query: 90  EFSTSWDIKATPTFFFLKDGQQVDKLVGA-NKPELQKKVAAAV 131
           E ++ + I + PT    K G+ V +L+G   K +L+ ++A  +
Sbjct: 62  ETTSQFGIMSIPTLILFKGGRPVKQLIGYQPKEQLEAQLADVL 104

>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C Length = 245

 Score = 78.2 bits (192), Expect = 8e-19
 Identities = 12/97 (12%), Positives = 33/97 (34%), Gaps = 2/97 (2%)

Query: 24  GNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLV 83
           G V  + + + + + + E  ++   ++ +        C  +      L+ +YP + F  +
Sbjct: 112 GFVYELESGEQFLETI-EKEQKITTIVVHIYEDGIKGCDALNSSLICLAAEYPMVKFCKI 170

Query: 84  DVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANK 120
                      +     PT    K G+ +   +   +
Sbjct: 171 KASN-TGAGDRFSSDVLPTLLVYKGGELLSNFISVTE 206

>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum} Length = 128

 Score = 75.1 bits (185), Expect = 1e-18
 Identities = 18/90 (20%), Positives = 40/90 (44%), Gaps = 2/90 (2%)

Query: 40  SEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP-SLMFLLVDVDELVEFSTSWDIK 98
           +  + +  +++  F A WC  C M +    +L + Y   +  L VD+D+    +  + +K
Sbjct: 36  NGVNMKNTVIVLYFFAKWCQACTMQSTEMDKLQKYYGKRIYLLKVDLDKNESLARKFSVK 95

Query: 99  ATPTFFFLKDGQQVDKLVGA-NKPELQKKV 127
           + PT   LK+   + +     +  +L   +
Sbjct: 96  SLPTIILLKNKTMLARKDHFVSSNDLIALI 125

>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} PDB: 2o7k_A 2o85_A 2o89_A 2o87_A Length = 106

 Score = 74.3 bits (183), Expect = 1e-18
 Identities = 32/85 (37%), Positives = 46/85 (54%), Gaps = 2/85 (2%)

Query: 49  VIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVDELVEFSTSWDIKATPTFFFLK 107
            + +F AT CGPC+MIAP   EL+  Y      L +DVDE    +  +++ + PT    K
Sbjct: 22  QLVDFWATACGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFK 81

Query: 108 DGQQVDKLVGA-NKPELQKKVAAAV 131
           DGQ VDK+VG   K  L + +   +
Sbjct: 82  DGQPVDKVVGFQPKENLAEVLDKHL 106

>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A Length = 112

 Score = 73.9 bits (182), Expect = 2e-18
 Identities = 36/106 (33%), Positives = 54/106 (50%), Gaps = 7/106 (6%)

Query: 30  TTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVDEL 88
            T   +  + SE      +V+A+F A WCGP +MIAP   EL ++    L  + +DVDE 
Sbjct: 6   ATDQSFSAETSE-----GVVLADFWAPWCGPSKMIAPVLEELDQEMGDKLKIVKIDVDEN 60

Query: 89  VEFSTSWDIKATPTFFFLKDGQQVDKLVGA-NKPELQKKVAAAVDS 133
            E +  + + + PT   LKDG+ V+  VG   K  LQ+ V   +  
Sbjct: 61  QETAGKYGVMSIPTLLVLKDGEVVETSVGFKPKEALQELVNKHLLE 106

>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A Length = 121

 Score = 73.9 bits (182), Expect = 3e-18
 Identities = 32/97 (32%), Positives = 55/97 (56%), Gaps = 2/97 (2%)

Query: 40  SEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP-SLMFLLVDVDELVEFSTSWDIK 98
           ++     K V+ +F ATWCGPC+M+AP   E++ +    L    +DVD   E + ++ + 
Sbjct: 24  TDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDVDTNPETARNFQVV 83

Query: 99  ATPTFFFLKDGQQVDKLVGAN-KPELQKKVAAAVDSV 134
           + PT    KDGQ V ++VGA  K  L ++++  V ++
Sbjct: 84  SIPTLILFKDGQPVKRIVGAKGKAALLRELSDVVPNL 120

>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A Length = 141

 Score = 74.1 bits (182), Expect = 4e-18
 Identities = 29/101 (28%), Positives = 51/101 (50%), Gaps = 2/101 (1%)

Query: 33  DIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP-SLMFLLVDVDELVEF 91
           D  +          K  I +F A WCGPC+M+AP   ELS++Y   +    V+VD+  E 
Sbjct: 38  DYENHSKEWKYLGDKPAIVDFYADWCGPCKMVAPILEELSKEYAGKIYIYKVNVDKEPEL 97

Query: 92  STSWDIKATPTFFFLKDGQQVDKLVGA-NKPELQKKVAAAV 131
           +  + I++ PT +F+    +    +GA +K +L+  +   +
Sbjct: 98  ARDFGIQSIPTIWFVPMKGEPQVNMGALSKEQLKGYIDKVL 138

>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct} Length = 106

 Score = 72.7 bits (179), Expect = 6e-18
 Identities = 37/94 (39%), Positives = 56/94 (59%), Gaps = 2/94 (2%)

Query: 40  SEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVDELVEFSTSWDIK 98
            E  K  K V+ +F A WCGPCRMIAP   EL+++Y   +  + V+VDE    +  + I+
Sbjct: 13  QEVLKSDKPVLVDFWAPWCGPCRMIAPIIEELAKEYEGKVKVVKVNVDENPNTAAQYGIR 72

Query: 99  ATPTFFFLKDGQQVDKLVGA-NKPELQKKVAAAV 131
           + PT    K+GQ VD+LVGA  K  L++++   +
Sbjct: 73  SIPTLLLFKNGQVVDRLVGAQPKEALKERIDKHL 106

>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1 Length = 107

 Score = 72.7 bits (179), Expect = 6e-18
 Identities = 26/95 (27%), Positives = 51/95 (53%), Gaps = 2/95 (2%)

Query: 40  SEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVDELVEFSTSWDIK 98
           +   +    V+ +F A WCGPCR+IAP   E++ +Y   L  + ++ DE    ++ + I+
Sbjct: 13  NVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDESPNVASEYGIR 72

Query: 99  ATPTFFFLKDGQQVDKLVGA-NKPELQKKVAAAVD 132
           + PT    K G++ + ++GA  K  + + V   ++
Sbjct: 73  SIPTIMVFKGGKKCETIIGAVPKATIVQTVEKYLN 107

>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C Length = 105

 Score = 72.3 bits (178), Expect = 8e-18
 Identities = 27/94 (28%), Positives = 51/94 (54%), Gaps = 2/94 (2%)

Query: 40  SEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVDELVEFSTSWDIK 98
               +    V+ +F A WCGPC++IAP   EL+++Y   +    ++ DE    +T ++I+
Sbjct: 12  EFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPGIATQYNIR 71

Query: 99  ATPTFFFLKDGQQVDKLVGA-NKPELQKKVAAAV 131
           + PT  F K+G++ + ++GA  K  L   +   +
Sbjct: 72  SIPTVLFFKNGERKESIIGAVPKSTLTDSIEKYL 105

>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1 Length = 115

 Score = 72.3 bits (178), Expect = 1e-17
 Identities = 22/96 (22%), Positives = 46/96 (47%), Gaps = 2/96 (2%)

Query: 40  SEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP-SLMFLLVDVDELVEFSTSWDIK 98
           SE  K  + V+  F A+WCGPC++++P  +  +  Y   L  + +++D        + ++
Sbjct: 19  SEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEIDPNPTTVKKYKVE 78

Query: 99  ATPTFFFLKDGQQVDKLVGA-NKPELQKKVAAAVDS 133
             P    +K  Q +D   G  +K +L   +   +++
Sbjct: 79  GVPALRLVKGEQILDSTEGVISKDKLLSFLDTHLNN 114

>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 137

 Score = 72.6 bits (178), Expect = 1e-17
 Identities = 22/88 (25%), Positives = 34/88 (38%), Gaps = 9/88 (10%)

Query: 49  VIANFSATWCGPCRMIAPFFSELSEKY--PSLMFLLVDVDELVEFSTSWDIKAT------ 100
            I  F A W   C+  AP +++LS KY    L F  VDV    + ST + +  +      
Sbjct: 29  WIVEFFANWSNDCQSFAPIYADLSLKYNCTGLNFGKVDVGRYTDVSTRYKVSTSPLTKQL 88

Query: 101 PTFFFLKDGQQVDKLVGA-NKPELQKKV 127
           PT    + G++  +      K       
Sbjct: 89  PTLILFQGGKEAMRRPQIDKKGRAVSWT 116

>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti} Length = 107

 Score = 71.5 bits (176), Expect = 2e-17
 Identities = 29/93 (31%), Positives = 54/93 (58%), Gaps = 2/93 (2%)

Query: 40  SEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVDELVEFSTSWDIK 98
            +  K   +V+ +F A WCGPC+MI P   E+ +++   +    V++D+  E   ++ ++
Sbjct: 14  QDVLKASGLVLVDFWAEWCGPCKMIGPALGEIGKEFAGKVTVAKVNIDDNPETPNAYQVR 73

Query: 99  ATPTFFFLKDGQQVDKLVGA-NKPELQKKVAAA 130
           + PT   ++DG+ +DK VGA  K +L+  V +A
Sbjct: 74  SIPTLMLVRDGKVIDKKVGALPKSQLKAWVESA 106

>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor} Length = 112

 Score = 71.6 bits (176), Expect = 2e-17
 Identities = 24/94 (25%), Positives = 46/94 (48%), Gaps = 2/94 (2%)

Query: 40  SEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP-SLMFLLVDVDELVEFSTSWDIK 98
            +  K  K V+ +F A WCGPCR IAP    ++ +Y   +  + +++DE    +  + + 
Sbjct: 17  QDVLKNDKPVLVDFWAAWCGPCRQIAPSLEAIAAEYGDKIEIVKLNIDENPGTAAKYGVM 76

Query: 99  ATPTFFFLKDGQQVDKLVGA-NKPELQKKVAAAV 131
           + PT    + G+    +VGA  K  + + +   +
Sbjct: 77  SIPTLNVYQGGEVAKTIVGAKPKAAIVRDLEDFI 110

>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ... Length = 108

 Score = 70.4 bits (173), Expect = 5e-17
 Identities = 27/94 (28%), Positives = 52/94 (55%), Gaps = 2/94 (2%)

Query: 40  SEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVDELVEFSTSWDIK 98
           ++  K    ++ +F A WCGPC+MIAP   E++++Y   L    +++D+    +  + I+
Sbjct: 14  TDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIR 73

Query: 99  ATPTFFFLKDGQQVDKLVGA-NKPELQKKVAAAV 131
             PT    K+G+     VGA +K +L++ + A +
Sbjct: 74  GIPTLLLFKNGEVAATKVGALSKGQLKEFLDANL 107

>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli} Length = 128

 Score = 70.9 bits (174), Expect = 6e-17
 Identities = 26/94 (27%), Positives = 51/94 (54%), Gaps = 2/94 (2%)

Query: 40  SEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVDELVEFSTSWDIK 98
           ++  K    ++ +F A WCGP +MIAP   E++++Y   L    +++D+    +  + I+
Sbjct: 34  TDVLKADGAILVDFWAEWCGPAKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIR 93

Query: 99  ATPTFFFLKDGQQVDKLVGA-NKPELQKKVAAAV 131
             PT    K+G+     VGA +K +L++ + A +
Sbjct: 94  GIPTLLLFKNGEVAATKVGALSKGQLKEFLDANL 127

>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1 Length = 85

 Score = 66.9 bits (164), Expect = 5e-16
 Identities = 18/87 (20%), Positives = 36/87 (41%), Gaps = 6/87 (6%)

Query: 47  KIVIANFSATWCGPCRMIAPFFSELSEKYP-SLMFLLVDVDELVEFSTSWDIKATPTFFF 105
           K+ I  F++  C  C        E++ + P ++    ++V E  + +  + I A PT   
Sbjct: 3   KVKIELFTSPMCPHCPAAKRVVEEVANEMPDAVEVEYINVMENPQKAMEYGIMAVPTIVI 62

Query: 106 LKDGQQVDKLVGA-NKPELQKKVAAAV 131
             D +     +GA  K  L + +   +
Sbjct: 63  NGDVE----FIGAPTKEALVEAIKKRL 85

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* Length = 287

 Score = 70.6 bits (173), Expect = 1e-15
 Identities = 25/99 (25%), Positives = 43/99 (43%), Gaps = 5/99 (5%)

Query: 41  EASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFL-LVDVDELVEFSTSWDIKA 99
           E S     V+  F +     C  + P    L+ +Y     L  +D D     +  + ++A
Sbjct: 22  EQSMT-TPVLFYFWSERSQHCLQLTPILESLAAQYNGQFILAKLDCDAEQMIAAQFGLRA 80

Query: 100 TPTFFFLKDGQQVDKLVGANKPELQKKVAAAVDSVVPSQ 138
            PT +  ++GQ VD   G  +PE    + A +D V+P +
Sbjct: 81  IPTVYLFQNGQPVDGFQGP-QPEEA--IRALLDXVLPRE 116

>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6 Length = 217

 Score = 69.3 bits (169), Expect = 2e-15
 Identities = 14/94 (14%), Positives = 31/94 (32%), Gaps = 2/94 (2%)

Query: 24  GNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLV 83
           G V  + T + + + + +  K    ++ N        C  +      L+ +YP + F  +
Sbjct: 99  GFVYELETGEQFLETIEKEQK-VTTIVVNIYEDGVRGCDALNSSLECLAAEYPMVKFCKI 157

Query: 84  DVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVG 117
                      +     PT    K G+ +   + 
Sbjct: 158 RASN-TGAGDRFSSDVLPTLLVYKGGELISNFIS 190

>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10 Length = 136

 Score = 66.2 bits (162), Expect = 5e-15
 Identities = 27/126 (21%), Positives = 44/126 (34%), Gaps = 26/126 (20%)

Query: 30  TTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELV 89
           T   +       AS +GK  +  F   WC  C   AP  S+++   P++ F+ +     V
Sbjct: 8   TATTLSGAPFDGASLQGKPAVLWFWTPWCPFCNAEAPSLSQVAAANPAVTFVGIATRADV 67

Query: 90  E----------------------FSTSWDIKATPTFFFL-KDG--QQVDKLVGA-NKPEL 123
                                      +++   P F F   DG    V+    A ++ EL
Sbjct: 68  GAMQSFVSKYNLNFTNLNDADGVIWARYNVPWQPAFVFYRADGTSTFVNNPTAAMSQDEL 127

Query: 124 QKKVAA 129
             +VAA
Sbjct: 128 SGRVAA 133

>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, alternative splicing, FBP interacting repressor, RRM, electron transport; 2.20A {Escherichia coli O157} Length = 222

 Score = 67.5 bits (165), Expect = 6e-15
 Identities = 27/102 (26%), Positives = 52/102 (50%), Gaps = 2/102 (1%)

Query: 40  SEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVDELVEFSTSWDIK 98
           ++  K    ++ +F A WCGPC+MIAP   E++++Y   L    +++D+    +  + I+
Sbjct: 24  TDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIR 83

Query: 99  ATPTFFFLKDGQQVDKLVGA-NKPELQKKVAAAVDSVVPSQK 139
             PT    K+G+     VGA +K +L++ + A +        
Sbjct: 84  GIPTLLLFKNGEVAATKVGALSKGQLKEFLDANLAGSAMEST 125

>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A Length = 151

 Score = 63.1 bits (154), Expect = 9e-14
 Identities = 24/135 (17%), Positives = 51/135 (37%), Gaps = 28/135 (20%)

Query: 30  TTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS--LMFLLVDVDE 87
             +D   +++  +  +GK V  NF  TWC PC+   P+ +   + + S  +  + V+V E
Sbjct: 10  VLEDTNGKRIELSDLKGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQGVEIVAVNVGE 69

Query: 88  LVE----------------------FSTSWDIKATPTFFFL-KDGQQVDKLVGANKPELQ 124
                                       ++D+   PT F +  +G+ V  + G      +
Sbjct: 70  SKIAVHNFMKSYGVNFPVVLDTDRQVLDAYDVSPLPTTFLINPEGKVVKVVTG---TMTE 126

Query: 125 KKVAAAVDSVVPSQK 139
             +   ++ + P + 
Sbjct: 127 SMIHDYMNLIKPGET 141

>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} Length = 165

 Score = 62.8 bits (153), Expect = 1e-13
 Identities = 30/141 (21%), Positives = 51/141 (36%), Gaps = 31/141 (21%)

Query: 30  TTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS--LMFLLVDVDE 87
           +   +  +  S AS +GK  I NF ATWC PCR   P   ++ + + S    F+ + V+E
Sbjct: 18  SGVTVDGKPFSSASLKGKAYIVNFFATWCPPCRSEIPDMVQVQKTWASRGFTFVGIAVNE 77

Query: 88  ---------------------------LVEFSTSWDIKATPTFFFL-KDGQQVDKLVGA- 118
                                               I   PT F +   G     +VG  
Sbjct: 78  QLPNVKNYMKTQGIIYPVMMATPELIRAFNGYIDGGITGIPTSFVIDASGNVSGVIVGPR 137

Query: 119 NKPELQKKVAAAVDSVVPSQK 139
           +K +  + V  A+ +   +++
Sbjct: 138 SKADFDRIVKMALGAKAATKE 158

>2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB struct genomics consortium, TBSGC, unknown function; 1.90A {Mycobacterium tuberculosis} Length = 352

 Score = 64.2 bits (156), Expect = 3e-13
 Identities = 23/158 (14%), Positives = 42/158 (26%), Gaps = 34/158 (21%)

Query: 13  EDGEHPVEFAGGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELS 72
           E      +  G    L       ++ +   S  GK+V+ +F A  C  C+   P      
Sbjct: 52  ESCGTAPDLKGITGWL---NTPGNKPIDLKSLRGKVVLIDFWAYSCINCQRAIPHVVGWY 108

Query: 73  EKYPS--LMFLLVDVDELV---------------------------EFSTSWDIKATPTF 103
           + Y    L  + V   E                                T++  +  P  
Sbjct: 109 QAYKDSGLAVIGVHTPEYAFEKVPGNVAKGAANLGISYPIALDNNYATWTNYRNRYWPAE 168

Query: 104 FFL-KDGQQVDKLVGA-NKPELQKKVAAAVDSVVPSQK 139
           + +   G       G  +    +  V   ++   P  K
Sbjct: 169 YLIDATGTVRHIKFGEGDYNVTETLVRQLLNDAKPGVK 206

>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A Length = 164

 Score = 61.6 bits (149), Expect = 4e-13
 Identities = 25/112 (22%), Positives = 47/112 (41%), Gaps = 9/112 (8%)

Query: 35  WDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLM-FLLVDVD-----EL 88
            +    EA+  G  ++     +WCG C+ + P F+E +E       F++V+++     + 
Sbjct: 35  LEDGKKEAAASGLPLMVIIHKSWCGACKALKPKFAESTEISELSHNFVMVNLEDEEEPKD 94

Query: 89  VEFSTSWDIKATPTFFFL-KDGQQVDKLVGANKPELQKKVAAAVDSVVPSQK 139
            +FS   D    P   FL   G+   +++  N     K    + + VV   K
Sbjct: 95  EDFSP--DGGYIPRILFLDPSGKVHPEIINENGNPSYKYFYVSAEQVVQGMK 144

>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A Length = 136

 Score = 60.8 bits (148), Expect = 5e-13
 Identities = 25/125 (20%), Positives = 46/125 (36%), Gaps = 26/125 (20%)

Query: 30  TTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELV 89
           + K +        S  GK  +  F A WC  C+  AP   +++  +P + F+ V   + V
Sbjct: 9   SAKTLDGHDFHGESLLGKPAVLWFWAPWCPTCQGEAPVVGQVAASHPEVTFVGVAGLDQV 68

Query: 90  E-----------------------FSTSWDIKATPTFFFL-KDGQQVDKLVGA-NKPELQ 124
                                      ++ +   P + F+   G  VD + G  ++ EL 
Sbjct: 69  PAMQEFVNKYPVKTFTQLADTDGSVWANFGVTQQPAYAFVDPHG-NVDVVRGRMSQDELT 127

Query: 125 KKVAA 129
           ++V A
Sbjct: 128 RRVTA 132

>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1 Length = 85

 Score = 59.6 bits (145), Expect = 5e-13
 Identities = 16/87 (18%), Positives = 36/87 (41%), Gaps = 6/87 (6%)

Query: 48  IVIANFSATWCGPCRMIAPFFSELSEKY-PSLMFLLVDVDELVEFSTSWDIKATPTFFFL 106
           + I  F++  C  C M      E  +++   +    +D+    E +  + + A P     
Sbjct: 3   VNIEVFTSPTCPYCPMAIEVVDEAKKEFGDKIDVEKIDIMVDREKAIEYGLMAVPAIAI- 61

Query: 107 KDGQQVDKLVGA-NKPELQKKVAAAVD 132
            +G    + VGA ++ EL + +   ++
Sbjct: 62  -NGV--VRFVGAPSREELFEAINDEME 85

>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1 Length = 123

 Score = 59.8 bits (145), Expect = 8e-13
 Identities = 27/108 (25%), Positives = 52/108 (48%), Gaps = 16/108 (14%)

Query: 40  SEASKEGKIVIANFSATWCGP--------------CRMIAPFFSELSEKYP-SLMFLLVD 84
           ++  K    ++ +F A WCGP              C+MIAP   E++++Y   L    ++
Sbjct: 15  TDVLKADGAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEIADEYQGKLTVAKLN 74

Query: 85  VDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGA-NKPELQKKVAAAV 131
           +D+    +  + I+  PT    K+G+     VGA +K +L++ + A +
Sbjct: 75  IDQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDANL 122

>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus} Length = 122

 Score = 59.7 bits (145), Expect = 1e-12
 Identities = 18/106 (16%), Positives = 37/106 (34%), Gaps = 6/106 (5%)

Query: 40  SEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLL-VDVDELVEFSTSWDIK 98
            +  +     + +F A WCGPC+  AP F  L+      +    VD     +      IK
Sbjct: 15  EKVLQGKTHWVVDFYAPWCGPCQNFAPEFELLARMIKGKVRAGKVDCQAYPQTCQKAGIK 74

Query: 99  ATPTFFFLKDGQQVDKLVGA-----NKPELQKKVAAAVDSVVPSQK 139
           A P+    +  +    +        +   +   +   ++++    K
Sbjct: 75  AYPSVKLYQYERAKKSIWEEQINSRDAKTIAALIYGKLETLQSQVK 120

>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A Length = 134

 Score = 59.4 bits (144), Expect = 1e-12
 Identities = 25/104 (24%), Positives = 44/104 (42%), Gaps = 12/104 (11%)

Query: 29  VTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPF-FS--ELSEKYPSLMFLLVDV 85
           + T D  +Q + EA  +GK V+ +  A WC  C+    + FS  ++ +     + L  +V
Sbjct: 16  IKTVDELNQALVEA--KGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALADTVLLQANV 73

Query: 86  ----DELVEFSTSWDIKATPTF-FFLKDGQQVD--KLVGANKPE 122
                + V      ++   PT  FF   GQ+    ++ G    E
Sbjct: 74  TANDAQDVALLKHLNVLGLPTILFFDGQGQEHPQARVTGFMDAE 117

>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A Length = 226

 Score = 61.3 bits (148), Expect = 2e-12
 Identities = 14/93 (15%), Positives = 35/93 (37%), Gaps = 6/93 (6%)

Query: 45  EGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLM-----FLLVDVDELVEFSTSWDIKA 99
           +  + I  F    C  C +      + + +            +V+  E  E++  +++ A
Sbjct: 133 DQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEYPEWADQYNVMA 192

Query: 100 TPTFFFLKDGQQVDKLVGA-NKPELQKKVAAAV 131
            P      +G+   +  GA  +    +K+ +A+
Sbjct: 193 VPKIVIQVNGEDRVEFEGAYPEKMFLEKLLSAL 225

>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15} Length = 158

 Score = 60.0 bits (146), Expect = 2e-12
 Identities = 24/111 (21%), Positives = 40/111 (36%), Gaps = 22/111 (19%)

Query: 30  TTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS--LMFLLVDVDE 87
               +  +  S A   GKIV+ NF A+WC  CR   P    L + +P   L+ L V+V++
Sbjct: 25  KLPTLSGENKSLAQYRGKIVLVNFWASWCPYCRDEMPSMDRLVKSFPKGDLVVLAVNVEK 84

Query: 88  LV-------------------EFSTSWDIKATPTFFFL-KDGQQVDKLVGA 118
                                +    +     P  F + + G    ++ G 
Sbjct: 85  RFPEKYRRAPVSFNFLSDATGQVQQRYGANRLPDTFIVDRKGIIRQRVTGG 135

>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix} Length = 165

 Score = 59.8 bits (145), Expect = 2e-12
 Identities = 19/139 (13%), Positives = 39/139 (28%), Gaps = 41/139 (29%)

Query: 30  TTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELV 89
           +   I  + +S  +  G +VI  F A WC  C  +A     L+EKY  +  + +D     
Sbjct: 21  SLTTIDGEVISLNNVGGDVVILWFMAAWCPSCVYMADLLDRLTEKYREISVIAIDFWTAE 80

Query: 90  ----------------------------------------EFSTSWDIKATPTFFFL-KD 108
                                                        +++++      + K 
Sbjct: 81  ALKALGLNKPGYPPPDTPEMFRKFIANYGDPSWIMVMDDGSLVEKFNVRSIDYIVIMDKS 140

Query: 109 GQQVDKLVGANKPELQKKV 127
              +      +  EL+  +
Sbjct: 141 SNVLYAGTTPSLGELESVI 159

>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B} Length = 153

 Score = 59.6 bits (145), Expect = 2e-12
 Identities = 21/135 (15%), Positives = 46/135 (34%), Gaps = 27/135 (20%)

Query: 30  TTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS--LMFLLVDVDE 87
           +  D+  + +S A  +GK+ + NF    C  C    P   + +  Y +     L V    
Sbjct: 12  SLPDLHGKTVSNADLQGKVTLINFWFPSCPGCVSEMPKIIKTANDYKNKNFQVLAVAQPI 71

Query: 88  -----LVEF------------------STSWDIKATPTFFFL-KDGQQVDKLVGA-NKPE 122
                + ++                    ++  +  PT   + K G+ +   VG  +  +
Sbjct: 72  DPIESVRQYVKDYGLPFTVMYDADKAVGQAFGTQVYPTSVLIGKKGEILKTYVGEPDFGK 131

Query: 123 LQKKVAAAVDSVVPS 137
           L +++  A  +    
Sbjct: 132 LYQEIDTAWRNSDAE 146

>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls} Length = 152

 Score = 59.6 bits (145), Expect = 2e-12
 Identities = 27/123 (21%), Positives = 53/123 (43%), Gaps = 28/123 (22%)

Query: 36  DQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS--LMFLLVDVDELVE--- 90
              +  + K G +V  +F A+WCGPCR   P+ +++  KY +     + V++D       
Sbjct: 18  TGVVKLSDKTGSVVYLDFWASWCGPCRQSFPWMNQMQAKYKAKGFQVVAVNLDAKTGDAM 77

Query: 91  -------------------FSTSWDIKATPTFFFL-KDGQQVDKLVGA---NKPELQKKV 127
                                  + +K  PT F + ++G+ + + VG    +K  L++++
Sbjct: 78  KFLAQVPAEFTVAFDPKGQTPRLYGVKGMPTSFLIDRNGKVLLQHVGFRPADKEALEQQI 137

Query: 128 AAA 130
            AA
Sbjct: 138 LAA 140

>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus} Length = 152

 Score = 59.2 bits (144), Expect = 2e-12
 Identities = 31/126 (24%), Positives = 51/126 (40%), Gaps = 27/126 (21%)

Query: 30  TTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS--LMFLLVDVDE 87
           +  DI  + +S A  +GK +  +  ATWCGPCR   P   EL EKY    + F+ +  D+
Sbjct: 14  SYPDINGKTVSLADLKGKYIYIDVWATWCGPCRGELPALKELEEKYAGKDIHFVSLSCDK 73

Query: 88  LVE-----------------------FSTSWDIKATPTFFFL-KDGQQVDKLVGA-NKPE 122
             +                       F  ++ I   P F  L +DG+ +   +   + P+
Sbjct: 74  NKKAWENMVTKDQLKGIQLHMGTDRTFMDAYLINGIPRFILLDRDGKIISANMTRPSDPK 133

Query: 123 LQKKVA 128
             +K  
Sbjct: 134 TAEKFN 139

>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} Length = 145

 Score = 58.5 bits (142), Expect = 4e-12
 Identities = 22/114 (19%), Positives = 40/114 (35%), Gaps = 29/114 (25%)

Query: 43  SKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS--LMFLLVDV--------------- 85
             +G+  I +F  +WC PC+   P F    + +PS  +  + V++               
Sbjct: 31  PNKGQKTILHFWTSWCPPCKKELPQFQSFYDAHPSDSVKLVTVNLVNSEQNQQVVEDFIK 90

Query: 86  ----------DELVEFSTSWDIKATPTFFFL-KDGQQVDKLVGA-NKPELQKKV 127
                     D   E    + I   PT F L + G+     +G     +L++  
Sbjct: 91  ANKLTFPIVLDSKGELMKEYHIITIPTSFLLNEKGEIEKTKIGPMTAEQLKEWT 144

>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A Length = 148

 Score = 58.5 bits (142), Expect = 5e-12
 Identities = 21/134 (15%), Positives = 42/134 (31%), Gaps = 32/134 (23%)

Query: 30  TTKDIW--DQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVD 86
           T +  W   +   E     K  + +F +  C  C+   P  +E  +KY   L  + V + 
Sbjct: 11  TGEKAWLNGEVTREQLIGEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQDQLNVVAVHMP 70

Query: 87  EL-----------------VEF----------STSWDIKATPTFFFL-KDGQQVDKLVGA 118
                              +            + +++ +  P ++   K GQ      G 
Sbjct: 71  RSEDDLDPGKIKETAAEHDITQPIFVDSDHALTDAFENEYVPAYYVFDKTGQLRHFQAGG 130

Query: 119 -NKPELQKKVAAAV 131
                L+K+V   +
Sbjct: 131 SGMKMLEKRVNRVL 144

>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus} Length = 130

 Score = 58.1 bits (141), Expect = 5e-12
 Identities = 21/98 (21%), Positives = 42/98 (42%), Gaps = 10/98 (10%)

Query: 35  WDQKMSEASKEGKIVIANFSATWCGPCRMIAPF-FSELS-EKYPSLMFLLVDVD----EL 88
           + + ++ A   G++V+  F +  C  C+ +  F  S+    +     F++  V     E 
Sbjct: 8   YPEALALAQAHGRMVMVYFHSEHCPYCQQMNTFVLSDPGVSRLLEARFVVASVSVDTPEG 67

Query: 89  VEFSTSWDIKATPTFFFL----KDGQQVDKLVGANKPE 122
            E +  + +  TPTF FL       ++V +L G+    
Sbjct: 68  QELARRYRVPGTPTFVFLVPKAGAWEEVGRLFGSRPRA 105

>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis} Length = 143

 Score = 58.2 bits (141), Expect = 7e-12
 Identities = 17/124 (13%), Positives = 37/124 (29%), Gaps = 35/124 (28%)

Query: 36  DQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS--LMFLLVDVDE------ 87
           D K S  ++ G+  + NF A +    R      +    K+    +    + +DE      
Sbjct: 22  DAKASFHNQLGRYTLLNFWAAYDAESRARNVQLANEVNKFGPDKIAMCSISMDEKESIFT 81

Query: 88  --LVEFSTSW------------------DIKATPTFFFL-KDGQQVDKLVGAN--KPELQ 124
             +                         D++     F +  +G     ++ AN    +L 
Sbjct: 82  ETVKIDKLDLSTQFHEGLGKESELYKKYDLRKGFKNFLINDEG----VIIAANVTPEKLT 137

Query: 125 KKVA 128
           + + 
Sbjct: 138 EILK 141

>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15} Length = 154

 Score = 58.1 bits (141), Expect = 8e-12
 Identities = 28/140 (20%), Positives = 46/140 (32%), Gaps = 29/140 (20%)

Query: 29  VTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS--LMFLLVDVD 86
            T   +  + +  +  +G++VI NF ATWC PCR   P    L+          L V +D
Sbjct: 11  FTLNTLNGEVVKLSDLKGQVVIVNFWATWCPPCREEIPSMMRLNAAMAGKPFRMLCVSID 70

Query: 87  EL-----------------------VEFSTSWDIKATPTFFFL-KDGQQVDKLVGA---N 119
           E                              +     P  F + + G  + K+VGA   +
Sbjct: 71  EGGKVAVEEFFRKTGFTLPVLLDADKRVGKLYGTTGVPETFVIDRHGVILKKVVGAMEWD 130

Query: 120 KPELQKKVAAAVDSVVPSQK 139
            PE+   +   +        
Sbjct: 131 HPEVIAFLNNELSKAREGHH 150

>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP} Length = 152

 Score = 57.7 bits (140), Expect = 9e-12
 Identities = 22/132 (16%), Positives = 39/132 (29%), Gaps = 30/132 (22%)

Query: 30  TTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS--LMFLLVDVDE 87
           T  D+    +S    +GK V+ +F    C  CR   P+  +    +         V  D 
Sbjct: 13  TGIDLKGNSVSLNDFKGKYVLVDFWFAGCSWCRKETPYLLKTYNAFKDKGFTIYGVSTDR 72

Query: 88  -------------------------LVEFSTSWDIKATPTFFFL-KDGQQVDKLVGANKP 121
                                    + +   S+ I   P    +  +G+ V K +     
Sbjct: 73  REEDWKKAIEEDKSYWNQVLLQKDDVKDVLESYCIVGFPHIILVDPEGKIVAKELRG--D 130

Query: 122 ELQKKVAAAVDS 133
           +L   V   V+ 
Sbjct: 131 DLYNTVEKFVNG 142

>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1 Length = 118

 Score = 56.5 bits (136), Expect = 1e-11
 Identities = 15/96 (15%), Positives = 34/96 (35%), Gaps = 5/96 (5%)

Query: 32  KDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLL-----VDVD 86
           +     +  EA  + +          C  CR  A   S +  +  + ++ +       ++
Sbjct: 15  EVTTVVRAQEALDKKETATFFIGRKTCPYCRKFAGTLSGVVAETKAHIYFINSEEPSQLN 74

Query: 87  ELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPE 122
           +L  F + + I   P F  + DGQ   +   +   +
Sbjct: 75  DLQAFRSRYGIPTVPGFVHITDGQINVRCDSSMSAQ 110

>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii} Length = 148

 Score = 57.4 bits (139), Expect = 1e-11
 Identities = 20/127 (15%), Positives = 37/127 (29%), Gaps = 30/127 (23%)

Query: 30  TTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS--LMFLLVDVDE 87
              D           + K  I  F  + CG C+   P   +   K  +  +     +++ 
Sbjct: 15  YMTDTTGTYRYLYDVQAKYTILFFWDSQCGHCQQETPKLYDWWLKNRAKGIQVYAANIER 74

Query: 88  -------------------------LVEFSTSWDIKATPTFFFL-KDGQQVDKLVGANKP 121
                                      +F  ++DI ATP  + L K+   + K +G    
Sbjct: 75  KDEEWLKFIRSKKIGGWLNVRDSKNHTDFKITYDIYATPVLYVLDKNKVIIAKRIGY--E 132

Query: 122 ELQKKVA 128
            L   + 
Sbjct: 133 NLDDFLV 139

>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A Length = 164

 Score = 57.5 bits (139), Expect = 2e-11
 Identities = 19/130 (14%), Positives = 39/130 (30%), Gaps = 32/130 (24%)

Query: 30  TTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS--LMFLLVDV-- 85
           T K   ++  S   K+ K  +  F A+WC  C        + ++         + V    
Sbjct: 22  TMKTADNRPASVYLKKDKPTLIKFWASWCPLCLSELGQAEKWAQDAKFSSANLITVASPG 81

Query: 86  --------------------------DELVEFSTSWDIKATPTFFFL-KDGQQVDKLVGA 118
                                     D     + + +I   P++  + KDG     + G+
Sbjct: 82  FLHEKKDGEFQKWYAGLNYPKLPVVTDNGGTIAQNLNISVYPSWALIGKDGDVQRIVKGS 141

Query: 119 -NKPELQKKV 127
            N+ +    +
Sbjct: 142 INEAQALALI 151

>4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae} Length = 138

 Score = 56.9 bits (138), Expect = 2e-11
 Identities = 21/131 (16%), Positives = 43/131 (32%), Gaps = 31/131 (23%)

Query: 30  TTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDV---- 85
               +  +    +  +GK V   F A+WC  C    P   E++++      +L  V    
Sbjct: 6   ELMGVDGKTYRLSDYKGKKVYLKFWASWCSICLASLPDTDEIAKEAGDDYVVLTVVSPGH 65

Query: 86  -------------------------DELVEFSTSWDIKATPTFFFL-KDGQQVDKLVGA- 118
                                    D   +   ++ +++ PT  F+ K+G+ V    G  
Sbjct: 66  KGEQSEADFKNWYKGLDYKNLPVLVDPSGKLLETYGVRSYPTQAFIDKEGKLVKTHPGFM 125

Query: 119 NKPELQKKVAA 129
            K  + + +  
Sbjct: 126 EKDAILQTLKE 136

>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum} Length = 183

 Score = 57.1 bits (138), Expect = 3e-11
 Identities = 23/159 (14%), Positives = 43/159 (27%), Gaps = 42/159 (26%)

Query: 10  HDEEDGEHPVEFAGGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFS 69
           +DE D +   +  G       +      +++ +  E ++VI N    WC PCR  +    
Sbjct: 29  YDEADRQQLPDIGG------DSLMEEGTQINLSDFENQVVILNAWGQWCAPCRSESDDLQ 82

Query: 70  ELSEKY--------PSLMFLLVDVDE--------------------------LVEFSTSW 95
            + E+         P    L ++V +                                  
Sbjct: 83  IIHEELQAAGNGDTPGGTVLGINVRDYSRDIAQDFVTDNGLDYPSIYDPPFMTAASLGGV 142

Query: 96  DIKATPTFFFL-KDGQQVDKLVGA-NKPELQKKVAAAVD 132
                PT   L K  +     +      ++       VD
Sbjct: 143 PASVIPTTIVLDKQHRPAAVFLREVTSKDVLDVALPLVD 181

>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis} Length = 148

 Score = 56.2 bits (136), Expect = 4e-11
 Identities = 19/120 (15%), Positives = 35/120 (29%), Gaps = 31/120 (25%)

Query: 38  KMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS---LMFLLVDVDE------- 87
             S      + ++ NF A+WC P          L+++Y        L + +D        
Sbjct: 25  SRSAERFRNRYLLLNFWASWCDPQPEANAELKRLNKEYKKNKNFAMLGISLDIDREAWET 84

Query: 88  ------------------LVEFSTSWDIKATPTFFFL-KDGQQVDKLVGANKPELQKKVA 128
                               E +  + I   PT   L   G+ + + +      L  K+ 
Sbjct: 85  AIKKDTLSWDQVCDFTGLSSETAKQYAILTLPTNILLSPTGKILARDIQG--EALTGKLK 142

>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A* Length = 116

 Score = 55.4 bits (133), Expect = 4e-11
 Identities = 14/92 (15%), Positives = 32/92 (34%), Gaps = 13/92 (14%)

Query: 40  SEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS--------LMFLLVDVDELVEF 91
            +   E ++++  F    C  C     + +E++ +YP         +  L +        
Sbjct: 14  DDDKAELRLLM--FEQPGCLYCAR---WDAEIAPQYPLTDEGRAAPVQRLQMRDPLPPGL 68

Query: 92  STSWDIKATPTFFFLKDGQQVDKLVGANKPEL 123
             +  +  TPTF  +    +  +L G    + 
Sbjct: 69  ELARPVTFTPTFVLMAGDVESGRLEGYPGEDF 100

>2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus} Length = 152

 Score = 55.8 bits (135), Expect = 6e-11
 Identities = 18/125 (14%), Positives = 40/125 (32%), Gaps = 28/125 (22%)

Query: 30  TTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS--LMFLLVDVDE 87
             KD+     S    +GK+V+ +F+               EL  KY S       + +D 
Sbjct: 19  QLKDLKGNTRSLTDLKGKVVLIDFTVYNNAMSAAHNLALRELYNKYASQGFEIYQISLDG 78

Query: 88  -----------------------LVEFSTSWDIKATPTFFFL-KDGQQVDKLVGANKPEL 123
                                     + + +++   P+ F + ++ +   +  G N  +L
Sbjct: 79  DEHFWKTSADNLPWVCVRDANGAYSSYISLYNVTNLPSVFLVNRNNELSAR--GENIKDL 136

Query: 124 QKKVA 128
            + + 
Sbjct: 137 DEAIK 141

>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B} Length = 151

 Score = 55.5 bits (134), Expect = 6e-11
 Identities = 26/134 (19%), Positives = 40/134 (29%), Gaps = 32/134 (23%)

Query: 28  LVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS--LMFLLVDV 85
           L   KD  +   S  S +  + I N  ATWCGPCR   P  S+  +      +  + + +
Sbjct: 8   LAGWKD--NTPQSLQSLKAPVRIVNLWATWCGPCRKEMPAMSKWYKAQKKGSVDMVGIAL 65

Query: 86  DE-------LVEFSTSW-------------------DIKATPTFFFL-KDGQQVDKLVGA 118
           D        L +   S+                    +   P              + G 
Sbjct: 66  DTSDNIGNFLKQTPVSYPIWRYTGANSRNFMKTYGNTVGVLPFTVVEAPKCGYRQTITGE 125

Query: 119 -NKPELQKKVAAAV 131
            N+  L   V  A 
Sbjct: 126 VNEKSLTDAVKLAH 139

>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus} Length = 154

 Score = 55.0 bits (133), Expect = 1e-10
 Identities = 23/128 (17%), Positives = 41/128 (32%), Gaps = 29/128 (22%)

Query: 32  KDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP--------------- 76
            D   Q ++ A+     VI  F A+WC  C+   P    ++E+                 
Sbjct: 17  LDPKGQPVTPATVSKPAVI-VFWASWCTVCKAEFPGLHRVAEETGVPFYVISREPRDTRE 75

Query: 77  -----------SLMFLLVDVDELVEFSTSWDIKATPTFFFL-KDGQQVDKLVGA-NKPEL 123
                       +  L  D D   E +  + +   P  F + ++G+ V    G   +  L
Sbjct: 76  VVLEYMKTYPRFIPLLASDRDRPHEVAARFKVLGQPWTFVVDREGKVVALFAGRAGREAL 135

Query: 124 QKKVAAAV 131
              +  A 
Sbjct: 136 LDALLLAG 143

>1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10 Length = 186

 Score = 55.5 bits (134), Expect = 1e-10
 Identities = 23/138 (16%), Positives = 40/138 (28%), Gaps = 34/138 (24%)

Query: 29  VTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS--LMFLLVDVD 86
           +  +D   +    +   GK ++ N  ATWC PCR   P   EL  K        + +++D
Sbjct: 43  LAFEDADGKPKKLSDFRGKTLLVNLWATWCVPCRKEMPALDELQGKLSGPNFEVVAINID 102

Query: 87  E----------------------------LVEFSTSWDIKATPTFFFL-KDGQQVDKLVG 117
                                          +          PT   +   G ++  + G
Sbjct: 103 TRDPEKPKTFLKEANLTRLGYFNDQKAKVFQDLKAIGRALGMPTSVLVDPQGCEIATIAG 162

Query: 118 A---NKPELQKKVAAAVD 132
                  +  K + AA  
Sbjct: 163 PAEWASEDALKLIRAATG 180

>1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10 Length = 144

 Score = 54.6 bits (132), Expect = 1e-10
 Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 3/61 (4%)

Query: 30 TTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS---LMFLLVDVD 86
          T       ++S  S  GK V   FSA+WC PCR   P  +E  EK+        +L+  D
Sbjct: 12 TNLLSKSGEVSLGSLVGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVAKNFEVVLISWD 71

Query: 87 E 87
          E
Sbjct: 72 E 72

>1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A Length = 146

 Score = 53.6 bits (129), Expect = 3e-10
 Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 29 VTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS---LMFLLVDV 85
          +      D ++   S  GK+V   FSA+WC P R   P   E  +K+        +    
Sbjct: 11 IEKLRRGDGEVEVKSLAGKLVFFYFSASWCPPARGFTPQLIEFYDKFHESKNFEVVFCTW 70

Query: 86 DE 87
          DE
Sbjct: 71 DE 72

>2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius rotundicauda} Length = 143

 Score = 53.2 bits (128), Expect = 4e-10
 Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 4/54 (7%)

Query: 38 KMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKY----PSLMFLLVDVDE 87
            +EA K+  I+   FSA WC PCR   P  +++  +          + V  D 
Sbjct: 18 NANEALKDKDIIGFYFSAHWCPPCRGFTPILADMYSELVDDSAPFEIIFVSSDR 71

>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A Length = 144

 Score = 52.8 bits (127), Expect = 7e-10
 Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 3/54 (5%)

Query: 37 QKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKY---PSLMFLLVDVDE 87
            ++  S  GK V   FSA+WC P R   P   +  + +    +   +L+  DE
Sbjct: 19 ADIALPSLAGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDE 72

>3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major} Length = 165

 Score = 52.5 bits (126), Expect = 1e-09
 Identities = 19/54 (35%), Positives = 23/54 (42%), Gaps = 3/54 (5%)

Query: 37 QKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKY---PSLMFLLVDVDE 87
                S  GK V   FSA+WC PCR   P   E  EK+    +   +L   DE
Sbjct: 39 DTADMDSLSGKTVFFYFSASWCPPCRGFTPQLVEFYEKHHDSKNFEIILASWDE 92

>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein disulfide isomerase, endoplasmic R isomerase; 1.83A {Homo sapiens} Length = 151

 Score = 52.0 bits (124), Expect = 2e-09
 Identities = 15/109 (13%), Positives = 40/109 (36%), Gaps = 4/109 (3%)

Query: 35  WDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSE--KYPSLMFLLVDVD-ELVEF 91
           +++ +  A K  K ++       C   + +   F++  E  +     F+++++  E  + 
Sbjct: 33  YEEGLFYAQKSKKPLMVIHHLEDCQYSQALKKVFAQNEEIQEMAQNKFIMLNLMHETTDK 92

Query: 92  STSWDIKATPTFFFL-KDGQQVDKLVGANKPELQKKVAAAVDSVVPSQK 139
           + S D +  P   F+         + G     L       +  ++ + K
Sbjct: 93  NLSPDGQYVPRIMFVDPSLTVRADIAGRYSNRLYTYEPRDLPLLIENMK 141

>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis} Length = 142

 Score = 51.6 bits (124), Expect = 2e-09
 Identities = 24/129 (18%), Positives = 39/129 (30%), Gaps = 32/129 (24%)

Query: 30  TTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSE---LSEKYPS--LMFLLVD 84
           T   +       +  + +  +  F    C  CR     F+E     E   +  L  L + 
Sbjct: 11  TYVTVHGDNSRMSRLKAQYTMLFFYDPDCSNCRKFEKLFAEIPAFVEMVENGTLRVLAIY 70

Query: 85  VDE--------LVEFSTSW----------------DIKATPTFFFL-KDGQQVDKLVGAN 119
            DE         V     W                DI+ATPT + L    + + K    +
Sbjct: 71  PDENREEWATKAVYMPQGWIVGWNKAGDIRTRQLYDIRATPTIYLLDGRKRVILK--DTS 128

Query: 120 KPELQKKVA 128
             +L   +A
Sbjct: 129 MEQLIDYLA 137

>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron} Length = 150

 Score = 52.0 bits (125), Expect = 2e-09
 Identities = 22/122 (18%), Positives = 40/122 (32%), Gaps = 33/122 (27%)

Query: 38  KMSEASKEGKIVIANFSATWCGPC--RMIAPFFSELSEKYPS---LMFLLVDVDE----- 87
             S  + + K ++ NF A+W      +       E+ +KY     +  L + +D      
Sbjct: 25  TRSSDAFKQKSLLINFWASWNDSISQKQSNSELREIYKKYKKNKYIGMLGISLDVDKQQW 84

Query: 88  --------------------LVEFSTSWDIKATPTFFFL-KDGQQVDKLVGANKPELQKK 126
                                 E +  + I   P    L  DG+ + K +     EL+KK
Sbjct: 85  KDAIKRDTLDWEQVCDFGGLNSEVAKQYSIYKIPANILLSSDGKILAKNLRG--EELKKK 142

Query: 127 VA 128
           + 
Sbjct: 143 IE 144

>2ls5_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, NEW structural genomics research consortium; NMR {Bacteroides thetaiotaomicron} Length = 159

 Score = 52.0 bits (125), Expect = 2e-09
 Identities = 21/125 (16%), Positives = 40/125 (32%), Gaps = 29/125 (23%)

Query: 30  TTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKY----PSLMFLLVDV 85
           T      ++++ +S  GK+V+  F+A+WCG CR   PF  +              + +D 
Sbjct: 17  TITLTDGKQVTLSSLRGKVVMLQFTASWCGVCRKEMPFIEKDIWLKHKDNADFALIGIDR 76

Query: 86  DE--------LVEFSTSW----------------DIKATPTFFFL-KDGQQVDKLVGANK 120
           DE              ++                          + ++G+ V      N+
Sbjct: 77  DEPLEKVLAFAKSTGVTYPLGLDPGADIFAKYALRDAGITRNVLIDREGKIVKLTRLYNE 136

Query: 121 PELQK 125
            E   
Sbjct: 137 EEFAS 141

>1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.47.1.1 PDB: 3lef_A Length = 167

 Score = 51.9 bits (124), Expect = 2e-09
 Identities = 8/74 (10%), Positives = 22/74 (29%), Gaps = 3/74 (4%)

Query: 42  ASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVD---ELVEFSTSWDIK 98
              E +  +      WC  C++            P++   ++      + +    + +  
Sbjct: 50  QRIERRYRLLVAGEMWCPDCQINLAALDFAQRLQPNIELAIISKGRAEDDLRQRLALERI 109

Query: 99  ATPTFFFLKDGQQV 112
           A P    L +   +
Sbjct: 110 AIPLVLVLDEEFNL 123

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A Length = 241

 Score = 52.5 bits (126), Expect = 3e-09
 Identities = 26/102 (25%), Positives = 42/102 (41%), Gaps = 8/102 (7%)

Query: 16  EHPVEFAGGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKY 75
           E  +E    N  LV     +D  +     +   V+  F A WCG C+  AP + +++   
Sbjct: 6   EDDLEVKEENGVLVLNDANFDNFV----ADKDTVLLEFYAPWCGHCKQFAPEYEKIANIL 61

Query: 76  ----PSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVD 113
               P +    +D       ++ +D+   PT   LK GQ VD
Sbjct: 62  KDKDPPIPVAKIDATSASVLASRFDVSGYPTIKILKKGQAVD 103

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A Length = 241

 Score = 51.4 bits (123), Expect = 7e-09
 Identities = 28/105 (26%), Positives = 47/105 (44%), Gaps = 8/105 (7%)

Query: 13  EDGEHPVEFAGGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFF---- 68
            +   P       V+LV TK+ +D    E   +  I++  F A WCG C+ +AP +    
Sbjct: 118 REVSQPDWTPPPEVTLVLTKENFD----EVVNDADIILVEFYAPWCGHCKKLAPEYEKAA 173

Query: 69  SELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVD 113
            ELS++ P +    VD     + +  +D+   PT    + G+  D
Sbjct: 174 KELSKRSPPIPLAKVDATAETDLAKRFDVSGYPTLKIFRKGRPYD 218

>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi} Length = 158

 Score = 51.3 bits (123), Expect = 3e-09
 Identities = 16/134 (11%), Positives = 38/134 (28%), Gaps = 38/134 (28%)

Query: 36  DQKMSEASKEGKIVIANFSATWCGPCRM-IAPFFSELSEKYPS--LMFLLVDVDE----- 87
              ++ A   GK+++       C  C M   P   ++   +P   +  L +         
Sbjct: 18  ATDLTLADLRGKVIVIEAFQMLCPGCVMHGIPLAQKVRAAFPEDKVAVLGLHTVFEHHEA 77

Query: 88  ----------------------------LVEFSTSWDIKATPTFFFL-KDGQQVDKLVGA 118
                                       +     ++ ++ TP+   + K G       G 
Sbjct: 78  MTPISLKAFLHEYRIKFPVGVDQPGDGAMPRTMAAYQMRGTPSLLLIDKAGDLRAHHFGD 137

Query: 119 -NKPELQKKVAAAV 131
            ++  L  ++A  +
Sbjct: 138 VSELLLGAEIATLL 151

>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa} Length = 133

 Score = 50.3 bits (120), Expect = 5e-09
 Identities = 16/94 (17%), Positives = 27/94 (28%), Gaps = 10/94 (10%)

Query: 35  WDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSL-MFLLVDVD------- 86
             + ++   +  K  +  F A WC  CR +                F +V +D       
Sbjct: 18  VKKALAAGKRTHKPTLLVFGANWCTDCRALDKSLRNQKNTALIAKHFEVVKIDVGNFDRN 77

Query: 87  -ELVEFSTSWDIKATPTFFFL-KDGQQVDKLVGA 118
            EL +          P    +  DG+      G 
Sbjct: 78  LELSQAYGDPIQDGIPAVVVVNSDGKVRYTTKGG 111

>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis} Length = 142

 Score = 50.1 bits (120), Expect = 6e-09
 Identities = 18/129 (13%), Positives = 39/129 (30%), Gaps = 32/129 (24%)

Query: 30  TTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSE---LSEKYPS--LMFLLVD 84
           T       K +      +  +   +   C  C  +         ++    +  L  L + 
Sbjct: 15  TYTLDSGVKGTLYQFPAEYTLLFINNPGCHACAEMIEGLKASPVINGFTAAKKLKVLSIY 74

Query: 85  VDE--------LVEFSTSW----------------DIKATPTFFFL-KDGQQVDKLVGAN 119
            DE          +F+  W                D++A PT + L K+   + K     
Sbjct: 75  PDEELDEWKKHRNDFAKEWTNGYDKELVIKNKNLYDLRAIPTLYLLDKNKTVLLKDATLQ 134

Query: 120 KPELQKKVA 128
             ++++ +A
Sbjct: 135 --KVEQYLA 141

>2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris} Length = 137

 Score = 49.3 bits (117), Expect = 2e-08
 Identities = 14/99 (14%), Positives = 32/99 (32%), Gaps = 4/99 (4%)

Query: 40  SEASKEGKIVIANFSATW--CGPCRMIAPFFSELSEKYPS-LMFLLVDVDELVEFSTSWD 96
              +  GKIV+  F            +A    EL   +P  L+   V  +        + 
Sbjct: 27  DFIAHSGKIVVLFFRGDAVRFPEAADLAVVLPELINAFPGRLVAAEVAAEAERGLMARFG 86

Query: 97  IKATPTFFFLKDGQQVDKLVGA-NKPELQKKVAAAVDSV 134
           +   P+   ++  + +  +    +      ++ A +  V
Sbjct: 87  VAVCPSLAVVQPERTLGVIAKIQDWSSYLAQIGAMLAEV 125

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A Length = 481

 Score = 50.6 bits (120), Expect = 2e-08
 Identities = 20/96 (20%), Positives = 41/96 (42%), Gaps = 2/96 (2%)

Query: 28  LVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFL-LVDVD 86
           L  T D ++ ++S+    G +++  F A WCG  + +AP +   + +   ++ L  VD  
Sbjct: 4   LELTDDNFESRISDTGSAG-LMLVEFFAPWCGHAKRLAPEYEAAATRLKGIVPLAKVDCT 62

Query: 87  ELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPE 122
                   + +   PT    +DG++     G    +
Sbjct: 63  ANTNTCNKYGVSGYPTLKIFRDGEEAGAYDGPRTAD 98

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A Length = 481

 Score = 45.6 bits (107), Expect = 1e-06
 Identities = 19/77 (24%), Positives = 39/77 (50%), Gaps = 4/77 (5%)

Query: 40  SEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKY---PSLMFLLVDVDELVEFSTSWD 96
              + E K V+  F A WCG C+ + P + EL EK    P+++   +D     +  + ++
Sbjct: 364 EIVNNENKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDATA-NDVPSPYE 422

Query: 97  IKATPTFFFLKDGQQVD 113
           ++  PT +F    ++++
Sbjct: 423 VRGFPTIYFSPANKKLN 439

>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 133

 Score = 48.2 bits (115), Expect = 3e-08
 Identities = 14/80 (17%), Positives = 29/80 (36%), Gaps = 5/80 (6%)

Query: 44  KEGKIVIANFSATWCGPCRMIAPFFSELSEKY-----PSLMFLLVDVDELVEFSTSWDIK 98
               + +  F A WCG C+ + P ++  + +        +    VD       ++ + I+
Sbjct: 23  DSEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDATVNQVLASRYGIR 82

Query: 99  ATPTFFFLKDGQQVDKLVGA 118
             PT    + G+      G 
Sbjct: 83  GFPTIKIFQKGESPVDYDGG 102

>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus} Length = 140

 Score = 48.2 bits (115), Expect = 3e-08
 Identities = 25/106 (23%), Positives = 42/106 (39%), Gaps = 8/106 (7%)

Query: 12  EEDGEHPVEFAGGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSEL 71
              G+  +E    N   V     +D  +     +   V+  F A WCG C+  AP + ++
Sbjct: 4   GSSGDDDLEVKEENGVWVLNDGNFDNFV----ADKDTVLLEFYAPWCGHCKQFAPEYEKI 59

Query: 72  SEKY----PSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVD 113
           +       P +    +D       ++ +D+   PT   LK GQ VD
Sbjct: 60  ASTLKDNDPPIAVAKIDATSASMLASKFDVSGYPTIKILKKGQAVD 105

>1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A {Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A Length = 123

 Score = 47.4 bits (112), Expect = 6e-08
 Identities = 17/102 (16%), Positives = 31/102 (30%), Gaps = 15/102 (14%)

Query: 42  ASKEGKIVIANFSAT-------WCGPCRMIAPFFSELSEKYPS-LMFLLVDVDELVE--- 90
               GK + A F+ +       WC  C    P   E  +      +F+   V E      
Sbjct: 20  EQHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISEGCVFIYCQVGEKPYWKD 79

Query: 91  ----FSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKVA 128
               F  +  + A PT       Q++ +        ++   +
Sbjct: 80  PNNDFRKNLKVTAVPTLLKYGTPQKLVESECLQANLVEMLFS 121

>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 126

 Score = 46.9 bits (112), Expect = 8e-08
 Identities = 26/92 (28%), Positives = 38/92 (41%), Gaps = 9/92 (9%)

Query: 24  GNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLL- 82
           GNV  V T + W + +          +  F A WC  C+ + P +   +E    L   + 
Sbjct: 7   GNV-RVITDENWRELLE------GDWMIEFYAPWCPACQNLQPEWESFAEWGEDLEVNIA 59

Query: 83  -VDVDELVEFSTSWDIKATPTFFFLKDGQQVD 113
            VDV E    S  + I A PT +  KDG+   
Sbjct: 60  KVDVTEQPGLSGRFIINALPTIYHCKDGEFRR 91

>2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii} Length = 160

 Score = 47.5 bits (112), Expect = 9e-08
 Identities = 15/111 (13%), Positives = 42/111 (37%), Gaps = 7/111 (6%)

Query: 12  EEDGEHPVEFAGGNVSLV----TTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPF 67
                H         S +     +    DQ +   +++ ++V   F   +   C  +   
Sbjct: 5   HHHHHHSSGLVPRGSSFMLQHLNSGWAVDQAIV--NEDERLVCIRFGHDYDPDCMKMDEL 62

Query: 68  FSELSEKYPSL-MFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVG 117
             ++++   +  +  LVD+ E+ +F+T +++    +  F    + +   +G
Sbjct: 63  LYKVADDIKNFCVIYLVDITEVPDFNTMYELYDPVSVMFFYRNKHMMIDLG 113

>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum} Length = 160

 Score = 47.5 bits (113), Expect = 9e-08
 Identities = 14/134 (10%), Positives = 34/134 (25%), Gaps = 39/134 (29%)

Query: 37  QKMSEASKEGKIVIANFSATWCGPCRM-IAPFFSELSEKYPS--LMFL------------ 81
           + +S     GK+V+       C  C     P   ++        +  +            
Sbjct: 21  EGLSNEDLRGKVVVVEVFQMLCPGCVNHGVPQAQKIHRMIDESQVQVIGLHSVFEHHDVM 80

Query: 82  ------------------LVDVD----ELVEFSTSWDIKATPTFFFL-KDGQQVDKLVGA 118
                              VD+      +      + ++ TP+     + G+      G 
Sbjct: 81  TPEALKVFIDEFGIKFPVAVDMPREGQRIPSTMKKYRLEGTPSIILADRKGRIRQVQFGQ 140

Query: 119 -NKPELQKKVAAAV 131
            +   L   + + +
Sbjct: 141 VDDFVLGLLLGSLL 154

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780

 Score = 48.2 bits (114), Expect = 1e-07
 Identities = 15/99 (15%), Positives = 31/99 (31%), Gaps = 8/99 (8%)

Query: 16  EHPVEFAGGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKY 75
               E    +V+ +  ++           + +  + +F A W  P R + P   + S   
Sbjct: 432 AFAKESVNSHVTTLGPQNFPA-------SDKEPWLVDFFAPWSPPSRALLPELRKASTLL 484

Query: 76  -PSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVD 113
              L    +D          ++I+A PT          +
Sbjct: 485 YGQLKVGTLDCTIHEGLCNMYNIQAYPTTVVFNQSSIHE 523

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780

 Score = 46.7 bits (110), Expect = 5e-07
 Identities = 17/116 (14%), Positives = 36/116 (31%), Gaps = 1/116 (0%)

Query: 8   RQHDEEDGEHPVEFAGGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPF 67
           +    E   +     G          +  ++   A   G++   NF +        +AP 
Sbjct: 95  QGGQYESWSYYRYDFGIYDDDPEIITLERREFDAAVNSGELWFVNFYSPGSSHSHDLAPT 154

Query: 68  FSELSEKY-PSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPE 122
           + E +++    L    V+  +         + + P+ F  + G    K  G    E
Sbjct: 155 WREFAKEVDGLLRIGAVNCGDDRMLCRMKGVNSYPSLFIFRSGMAAVKYNGDRSKE 210

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780

 Score = 43.2 bits (101), Expect = 8e-06
 Identities = 11/76 (14%), Positives = 30/76 (39%), Gaps = 1/76 (1%)

Query: 37  QKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKY-PSLMFLLVDVDELVEFSTSW 95
            ++ +  K  ++ + +F + W  P +++ P +  ++      +    VD  +   F T  
Sbjct: 554 NELVKQRKHDEVWMVDFYSPWSHPSQVLMPEWKRMARTLTGLINVGSVDCGQYHSFCTQE 613

Query: 96  DIKATPTFFFLKDGQQ 111
           +++  P   F      
Sbjct: 614 NVQRYPEIRFYPQKSS 629

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780

 Score = 42.4 bits (99), Expect = 1e-05
 Identities = 17/100 (17%), Positives = 31/100 (31%), Gaps = 1/100 (1%)

Query: 12  EEDGEHPVEFAGGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSEL 71
             D      +  G +   +          +  +     + +F A W GP +  AP F  L
Sbjct: 641 NRDAYSLRSWGLGFLPQASIDLTPQTFNEKVLQGKTHWVVDFYAPWSGPSQNFAPEFELL 700

Query: 72  SEKYPS-LMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQ 110
           +      +    VD     +      IKA P+    +  +
Sbjct: 701 ARMIKGKVRAGKVDCQAYPQTCQKAGIKAYPSVKLYQYER 740

>2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: c.47.1.24 Length = 153

 Score = 46.4 bits (110), Expect = 2e-07
 Identities = 12/107 (11%), Positives = 33/107 (30%), Gaps = 8/107 (7%)

Query: 35  WDQKMSEASKEGKIVIANFSATWCGPCRMIAP--FFSELSEKYPSLMFLLVDVD----EL 88
           ++        + K ++ N        C+ +    + +E  +      F+   V     E 
Sbjct: 31  FETAKECGQMQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIREHFIFWQVYHDSEEG 90

Query: 89  VEFSTSWDIKATPTFFFL--KDGQQVDKLVGANKPELQKKVAAAVDS 133
             +   + +   P    L  + GQ++ +    +      +V   +  
Sbjct: 91  QRYIQFYKLGDFPYVSILDPRTGQKLVEWHQLDVSSFLDQVTGFLGE 137

>1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2 Length = 120

 Score = 45.7 bits (109), Expect = 2e-07
 Identities = 20/90 (22%), Positives = 39/90 (43%), Gaps = 8/90 (8%)

Query: 28  LVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKY----PSLMFLLV 83
           LV  K  + + +       K ++  F A WCG C+ +AP +++ + K       +    V
Sbjct: 10  LVLRKSNFAEAL----AAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKV 65

Query: 84  DVDELVEFSTSWDIKATPTFFFLKDGQQVD 113
           D  E  + +  + ++  PT  F ++G    
Sbjct: 66  DATEESDLAQQYGVRGYPTIKFFRNGDTAS 95

>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold, sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A {Trypanosoma brucei} PDB: 3qd9_A* Length = 470

 Score = 46.9 bits (110), Expect = 4e-07
 Identities = 23/131 (17%), Positives = 36/131 (27%), Gaps = 12/131 (9%)

Query: 15  GEHPVEFAGGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEK 74
              P  F   +  +  + D + +    A     IV   F    CG CR  A  FS+ +  
Sbjct: 13  SPRPGLFHLDSSVVDLSGDDFSRVHRVAPLCPWIV--LFYNDGCGACRRYASTFSKFAGG 70

Query: 75  Y---------PSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQK 125
                            V+    V+    +DI   P  FF        +          +
Sbjct: 71  LKVEHGKDALQIATAAAVNCASEVDLCRKYDINFVPRLFFFYPRDS-CRSNEECGTSSLE 129

Query: 126 KVAAAVDSVVP 136
            VA     +  
Sbjct: 130 HVAFENSHLEV 140

>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus} Length = 133

 Score = 45.1 bits (107), Expect = 5e-07
 Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 3/70 (4%)

Query: 44  KEGKIVIANFSATWCGPCRMIAPFFSELSEKY---PSLMFLLVDVDELVEFSTSWDIKAT 100
              K V+  F A WCG C+ + P ++ L +KY     L+   +D       +  + ++  
Sbjct: 23  DPKKDVLIEFYAPWCGHCKQLEPIYTSLGKKYKGQKDLVIAKMDATANDITNDQYKVEGF 82

Query: 101 PTFFFLKDGQ 110
           PT +F   G 
Sbjct: 83  PTIYFAPSGD 92

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A Length = 504

 Score = 46.4 bits (109), Expect = 6e-07
 Identities = 16/69 (23%), Positives = 31/69 (44%), Gaps = 2/69 (2%)

Query: 44  KEGKIVIANFSATWCGPCRMIAPFFSELSEKY--PSLMFLLVDVDELVEFSTSWDIKATP 101
           +   +V+A F A WCG C+ +AP + + +E     ++    +D  E  +     +I   P
Sbjct: 29  QSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKNITLAQIDCTENQDLCMEHNIPGFP 88

Query: 102 TFFFLKDGQ 110
           +    K+  
Sbjct: 89  SLKIFKNSD 97

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A Length = 504

 Score = 45.2 bits (106), Expect = 2e-06
 Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 2/73 (2%)

Query: 40  SEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSL--MFLLVDVDELVEFSTSWDI 97
              +   K V+  + A WCG C+ +AP + EL++ Y +     L+  +D          I
Sbjct: 370 EIVNDPKKDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKLDHTENDVRGVVI 429

Query: 98  KATPTFFFLKDGQ 110
           +  PT      G+
Sbjct: 430 EGYPTIVLYPGGK 442

>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A Length = 111

 Score = 43.8 bits (104), Expect = 8e-07
 Identities = 24/95 (25%), Positives = 42/95 (44%), Gaps = 9/95 (9%)

Query: 28  LVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKY----PSLMFLLV 83
           L  T++ +D  ++E      I    F A WCG C+ +AP + ELS+K       +    V
Sbjct: 8   LALTENNFDDTIAE-----GITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEV 62

Query: 84  DVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGA 118
           D        + + ++  PT    + G++V +  G 
Sbjct: 63  DCTAERNICSKYSVRGYPTLLLFRGGKKVSEHSGG 97

>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus} Length = 130

 Score = 44.3 bits (105), Expect = 8e-07
 Identities = 12/73 (16%), Positives = 29/73 (39%), Gaps = 1/73 (1%)

Query: 40  SEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLL-VDVDELVEFSTSWDIK 98
            E  +   + +  F A WCG C+ + P + + +     ++ +  V+ D+       + ++
Sbjct: 29  REVIQSDGLWLVEFYAPWCGHCQRLTPEWKKAATALKDVVKVGAVNADKHQSLGGQYGVQ 88

Query: 99  ATPTFFFLKDGQQ 111
             PT       + 
Sbjct: 89  GFPTIKIFGANKN 101

>3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide exchange, cell inner membrane, CYT C-type biogenesis, disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB: 3kh9_A Length = 176

 Score = 44.2 bits (105), Expect = 2e-06
 Identities = 13/39 (33%), Positives = 23/39 (58%)

Query: 36 DQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEK 74
           ++++EA  +GK  + N   TWC  CR+  P  + L+E+
Sbjct: 48 ARRLTEADLKGKPALVNVWGTWCPSCRVEHPELTRLAEQ 86

>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae} Length = 298

 Score = 44.0 bits (103), Expect = 3e-06
 Identities = 14/93 (15%), Positives = 29/93 (31%), Gaps = 3/93 (3%)

Query: 40  SEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKY-PSLMFLLVDVDELVE--FSTSWD 96
                     +  F A WCG C+ ++  F + +++    +    V+ D          +D
Sbjct: 29  KAIHNTNYTSLVEFYAPWCGHCKKLSSTFRKAAKRLDGVVQVAAVNCDLNKNKALCAKYD 88

Query: 97  IKATPTFFFLKDGQQVDKLVGANKPELQKKVAA 129
           +   PT    +  +        N  +     A 
Sbjct: 89  VNGFPTLMVFRPPKIDLSKPIDNAKKSFSAHAN 121

>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A Length = 361

 Score = 43.5 bits (102), Expect = 5e-06
 Identities = 19/71 (26%), Positives = 29/71 (40%), Gaps = 1/71 (1%)

Query: 40  SEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSL-MFLLVDVDELVEFSTSWDIK 98
             A  E K V   F A WCG C+ +AP + +L E Y      ++  +D       +  + 
Sbjct: 261 DVAFDEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDSTANEVEAVKVH 320

Query: 99  ATPTFFFLKDG 109
           + PT  F    
Sbjct: 321 SFPTLKFFPAS 331

>1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold, cytochrome C maturation, atomic resolution oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP: c.47.1.10 Length = 156

 Score = 41.1 bits (97), Expect = 1e-05
 Identities = 13/40 (32%), Positives = 21/40 (52%)

Query: 36 DQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKY 75
             +  A+ +GK+ + N  A+WC PC   AP  +EL +  
Sbjct: 32 VPGLDPAAFKGKVSLVNVWASWCVPCHDEAPLLTELGKDK 71

>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens} Length = 382

 Score = 41.9 bits (98), Expect = 2e-05
 Identities = 18/78 (23%), Positives = 33/78 (42%), Gaps = 7/78 (8%)

Query: 44  KEGKIVIANFSATWCGPCRMIAPFFSELSEKY-------PSLMFLLVDVDELVEFSTSWD 96
               + + NF A WC   +M+ P F E S+           ++F  VD D+  + +  + 
Sbjct: 20  NNADVALVNFYADWCRFSQMLHPIFEEASDVIKEEFPNENQVVFARVDCDQHSDIAQRYR 79

Query: 97  IKATPTFFFLKDGQQVDK 114
           I   PT    ++G  + +
Sbjct: 80  ISKYPTLKLFRNGMMMKR 97

>2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal thioredoxin-like domain, N-terminal beta-sheet, fingerprint rigion, oxidoreductase; 1.90A {Escherichia coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A Length = 168

 Score = 41.1 bits (97), Expect = 2e-05
 Identities = 12/35 (34%), Positives = 20/35 (57%)

Query: 40 SEASKEGKIVIANFSATWCGPCRMIAPFFSELSEK 74
          ++   +GK V+ N  ATWC  CR    + ++LS +
Sbjct: 45 ADVLTQGKPVLLNVWATWCPTCRAEHQYLNQLSAQ 79

>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae} Length = 154

 Score = 40.7 bits (95), Expect = 2e-05
 Identities = 14/98 (14%), Positives = 38/98 (38%), Gaps = 17/98 (17%)

Query: 35  WDQKMSEASKEGKIVIANFS-ATWCGPCRMIA--PFFSELSEKYPSLMFLLVDVD----- 86
           + + +  + ++ K +   F+ + WC  C  +      S   + +  +   +V+VD     
Sbjct: 36  YAEALEHSKQDHKPIGLFFTGSDWCMWCIKMQDQILQSSEFKHFAGVHLHMVEVDFPQKN 95

Query: 87  --------ELVEFSTSWDIKATPTFFFL-KDGQQVDKL 115
                   +  E    + +   P   F+  +G+Q+ ++
Sbjct: 96  HQPEEQRQKNQELKAQYKVTGFPELVFIDAEGKQLARM 133

>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} Length = 127

 Score = 40.0 bits (94), Expect = 3e-05
 Identities = 8/72 (11%), Positives = 19/72 (26%), Gaps = 6/72 (8%)

Query: 44  KEGKIVIANFSATWCGPCRMIAPFFSELSEKY------PSLMFLLVDVDELVEFSTSWDI 97
              K V   +   W          + +LS          + +   +D ++  +      +
Sbjct: 31  DPEKDVFVLYYVPWSRHSVAAMRLWDDLSMSQSQKRNHLTFVAARIDGEKYPDVIERMRV 90

Query: 98  KATPTFFFLKDG 109
              PT  +    
Sbjct: 91  SGFPTMRYYTRI 102

>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A Length = 229

 Score = 40.8 bits (95), Expect = 3e-05
 Identities = 21/135 (15%), Positives = 45/135 (33%), Gaps = 18/135 (13%)

Query: 14  DGEHPVEFAGGN--------VSLVTTKDIWDQKMSEASKE------GKIVIANFSATWCG 59
           D ++ + + G          ++ +        ++SE + E        I I  F  T CG
Sbjct: 90  DKDYGIRYIGLPAGLEFTTLINGIFHVSQRKPQLSEKTLELLQVVDIPIEIWVFVTTSCG 149

Query: 60  PCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGA- 118
            C   A    + +     +   ++D  E  + +  + +   P        + V + VGA 
Sbjct: 150 YCPSAAVMAWDFALANDYITSKVIDASENQDLAEQFQVVGVPKIVI---NKGVAEFVGAQ 206

Query: 119 NKPELQKKVAAAVDS 133
            +      + A  + 
Sbjct: 207 PENAFLGYIMAVYEK 221

>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A Length = 229

 Score = 40.0 bits (93), Expect = 7e-05
 Identities = 13/103 (12%), Positives = 24/103 (23%), Gaps = 7/103 (6%)

Query: 44  KEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS------LMFLLVDVDELVEFSTSWDI 97
           KE   +     A  C  C+       E  E          +   +       E +  + +
Sbjct: 20  KEPVSIKLFSQAIGCESCQTAEELLKETVEVIGEAVGQDKIKLDIYSPFTHKEETEKYGV 79

Query: 98  KATPTFFFLKDGQQVDKLVGA-NKPELQKKVAAAVDSVVPSQK 139
              PT     D     + +G     E    +           +
Sbjct: 80  DRVPTIVIEGDKDYGIRYIGLPAGLEFTTLINGIFHVSQRKPQ 122

>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens} Length = 244

 Score = 41.1 bits (96), Expect = 3e-05
 Identities = 18/104 (17%), Positives = 31/104 (29%), Gaps = 8/104 (7%)

Query: 44  KEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLV------DVDELVEFSTSWDI 97
                    F A+WCG C   AP +  L+E   +    L         +        ++I
Sbjct: 28  GSRSAWAVEFFASWCGHCIAFAPTWXALAEDVKAWRPALYLAALDCAEETNSAVCRDFNI 87

Query: 98  KATPT--FFFLKDGQQVDKLVGANKPELQKKVAAAVDSVVPSQK 139
              PT  FF          +      ++Q      +D++     
Sbjct: 88  PGFPTVRFFXAFTXNGSGAVFPVAGADVQTLRERLIDALESHHD 131

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus} Length = 210

 Score = 39.8 bits (93), Expect = 6e-05
 Identities = 20/99 (20%), Positives = 35/99 (35%), Gaps = 4/99 (4%)

Query: 40  SEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKY-PSLMFLLVDVDELVEFSTSWDIK 98
             A   G++   NF +  C  C  +AP + E +++    L    V+  +         + 
Sbjct: 108 DAAVNSGELWFVNFYSPGCSHCHDLAPTWREFAKEVDGLLRIGAVNCGDDRMLCRMKGVN 167

Query: 99  ATPTFFFLKDGQQVDKLVGANKPELQKKVAAAVDSVVPS 137
           + P+ F  + G    K  G    E    + A     V S
Sbjct: 168 SYPSLFIFRSGMAAVKYNGDRSKE---SLVAFAMQHVRS 203

>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A* Length = 519

 Score = 40.3 bits (93), Expect = 8e-05
 Identities = 16/104 (15%), Positives = 29/104 (27%), Gaps = 8/104 (7%)

Query: 44  KEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLV------DVDELVEFSTSWDI 97
                    F A+WCG     AP + EL+         L         +        ++I
Sbjct: 28  GSSSAWAVEFFASWCGHAIAFAPTWKELANDVKDWRPALNLAVLDCAEETNSAVCREFNI 87

Query: 98  KATPTFFFLKDGQQVDKLVG--ANKPELQKKVAAAVDSVVPSQK 139
              PT  F +   +             +Q      +D++   + 
Sbjct: 88  AGFPTVRFFQAFTKNGSGATLPGAGANVQTLRMRLIDALESHRD 131

>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A Length = 121

 Score = 38.5 bits (90), Expect = 1e-04
 Identities = 20/71 (28%), Positives = 29/71 (40%), Gaps = 5/71 (7%)

Query: 44  KEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMF----LLVDVDELVEFSTSWDIKA 99
            + K V+  F A WCG C+ +AP + EL   Y    F    ++  VD         +I+ 
Sbjct: 23  DDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATAN-DVPDEIQG 81

Query: 100 TPTFFFLKDGQ 110
            PT      G 
Sbjct: 82  FPTIKLYPAGA 92

>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3trq_A* 3trp_A* 3uom_A Length = 367

 Score = 38.8 bits (90), Expect = 2e-04
 Identities = 11/110 (10%), Positives = 33/110 (30%), Gaps = 13/110 (11%)

Query: 12  EEDGEHPVEFAGGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCR------MIA 65
           EE  + P       V +      +        K+ +++   +               M  
Sbjct: 1   EEGLDFPEYDGVDRV-INVNAKNYKNVF----KKYEVLALLYHEPPEDDKASQRQFEMEE 55

Query: 66  PFFSELSE--KYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVD 113
                 ++  +   + F LVD ++    +    +    + +  K+ + ++
Sbjct: 56  LILELAAQVLEDKGVGFGLVDSEKDAAVAKKLGLTEEDSIYVFKEDEVIE 105

>2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Shigella flexneri 2A} PDB: 2hfd_A Length = 140

 Score = 38.1 bits (88), Expect = 2e-04
 Identities = 12/89 (13%), Positives = 25/89 (28%), Gaps = 3/89 (3%)

Query: 47  KIVIANFSATWCGPCRMIAPFFSELSEKYPSLMF--LLVDVDELVEFSTSWDIKATPTFF 104
            +V+ +                 EL  ++P   +   + D+++       +     P   
Sbjct: 37  GVVLLSSDPKRTPEVSDNPVMIGELLHEFPDYTWQVAIADLEQSEAIGDRFGAFRFPATL 96

Query: 105 FLKDGQQVDKLVGA-NKPELQKKVAAAVD 132
               G     L G     EL   +   V+
Sbjct: 97  VFTGGNYRGVLNGIHPWAELINLMRGLVE 125

>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A Length = 350

 Score = 38.1 bits (88), Expect = 3e-04
 Identities = 7/74 (9%), Positives = 24/74 (32%), Gaps = 9/74 (12%)

Query: 49  VIANFSATWCGPCRMIAPFFSELSE---------KYPSLMFLLVDVDELVEFSTSWDIKA 99
           V+  +        ++    F              ++  + F++VD  +  + +       
Sbjct: 30  VLCLYYHESVSSDKVAQKQFQLKEIVLELVAQVLEHKDIGFVMVDAKKEAKLAKKLGFDE 89

Query: 100 TPTFFFLKDGQQVD 113
             + + LK  + ++
Sbjct: 90  EGSLYVLKGDRTIE 103

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	139
3zzx_A	105	Thioredoxin; oxidoreductase; 1.88A {Litopenaeus va	99.97
3d22_A	139	TRXH4, thioredoxin H-type; electron transport, cyt	99.96
2av4_A	160	Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECI	99.95
1xfl_A	124	Thioredoxin H1; AT3G51030, structural genomics, pr	99.95
1ep7_A	112	Thioredoxin CH1, H-type; electron transport; 2.10A	99.94
2vm1_A	118	Thioredoxin, thioredoxin H isoform 1.; oxidoreduct	99.94
1gh2_A	107	Thioredoxin-like protein; redox-active center, ele	99.94
3f3q_A	109	Thioredoxin-1; His TAG, electron transport, cytopl	99.94
1ti3_A	113	Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Popul	99.94
2qsi_A	137	Putative hydrogenase expression/formation protein;	99.94
3qfa_C	116	Thioredoxin; protein-protein complex, rossmann fol	99.93
1r26_A	125	Thioredoxin; redox-active disulfide, electron tran	99.93
3m9j_A	105	Thioredoxin; oxidoreductase; 1.10A {Homo sapiens}	99.93
2vlu_A	122	Thioredoxin, thioredoxin H isoform 2.; oxidoreduct	99.93
4euy_A	105	Uncharacterized protein; structural genomics, PSI-	99.93
2qgv_A	140	Hydrogenase-1 operon protein HYAE; alpha-beta prot	99.93
3d6i_A	112	Monothiol glutaredoxin-3; thioredoxin-like, electr	99.93
2wz9_A	153	Glutaredoxin-3; protein binding; 1.55A {Homo sapie	99.93
3gnj_A	111	Thioredoxin domain protein; APC92103, STR genomics	99.92
1syr_A	112	Thioredoxin; SGPP, structural genomics, PSI, prote	99.92
1w4v_A	119	Thioredoxin, mitochondrial; antioxidant enzyme, mi	99.92
2vim_A	104	Thioredoxin, TRX; thioredoxin fold, oxidoreductase	99.92
2oe3_A	114	Thioredoxin-3; electron transport, alpha/beta sand	99.92
1xwb_A	106	Thioredoxin; dimerization, redox regulation, THI X	99.92
2pu9_C	111	TRX-F, thioredoxin F-type, chloroplast; protein-pr	99.92
2xc2_A	117	Thioredoxinn; oxidoreductase, protein disulfide re	99.92
3die_A	106	Thioredoxin, TRX; electron transport, SWAP domain,	99.92
3tco_A	109	Thioredoxin (TRXA-1); disulfide oxidoreductase, ox	99.92
3gix_A	149	Thioredoxin-like protein 4B; PRE-mRNA splicing, TX	99.92
2j23_A	121	Thioredoxin; immune protein, autoreactivity, cross	99.91
2e0q_A	104	Thioredoxin; electron transport; 1.49A {Sulfolobus	99.91
3p2a_A	148	Thioredoxin 2, putative thioredoxin-like protein;	99.91
2l6c_A	110	Thioredoxin; oxidoreductase; NMR {Desulfovibrio vu	99.91
2trx_A	108	Thioredoxin; electron transport; 1.68A {Escherichi	99.91
2o8v_B	128	Thioredoxin 1; disulfide crosslinked complex, oxid	99.91
2voc_A	112	Thioredoxin; electron transport, homodimer, disulf	99.91
1thx_A	115	Thioredoxin, thioredoxin 2; oxido-reductase, elect	99.91
1t00_A	112	Thioredoxin, TRX; redox regulation, multifunction	99.91
3hz4_A	140	Thioredoxin; NYSGXRC, PSI-II, reduced form, protei	99.91
3cxg_A	133	Putative thioredoxin; malaria, structural GEN oxid	99.91
3evi_A	118	Phosducin-like protein 2; alpha beta, 3-layer(ABA)	99.91
2f51_A	118	Thioredoxin; electron transport; 1.90A {Trichomona	99.91
3hxs_A	141	Thioredoxin, TRXP; electron transport; 2.00A {Bact	99.91
2dj1_A	140	Protein disulfide-isomerase A4; protein ERP-72, ER	99.91
1dby_A	107	Chloroplast thioredoxin M CH2; thioredoxin CH2, ch	99.91
2ppt_A	155	Thioredoxin-2; thiredoxin, zinc finger, oxidoreduc	99.91
1faa_A	124	Thioredoxin F; electron transport; 1.85A {Spinacia	99.91
1nsw_A	105	Thioredoxin, TRX; thermostability, electron transp	99.91
1qgv_A	142	Spliceosomal protein U5-15KD; snRNP, thioredoxin,	99.9
1wmj_A	130	Thioredoxin H-type; structural genomics, program f	99.9
1fb6_A	105	Thioredoxin M; electron transport; 2.10A {Spinacia	99.9
2yzu_A	109	Thioredoxin; redox protein, electron transport, st	99.9
2l5l_A	136	Thioredoxin; structural genomics, electron transpo	99.9
2i4a_A	107	Thioredoxin; acidophIle, disulfide exchange, oxido	99.9
1x5d_A	133	Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC	99.9
2l57_A	126	Uncharacterized protein; structural genomics, unkn	99.9
3emx_A	135	Thioredoxin; structural genomics, oxidoreductase,	99.9
2dbc_A	135	PDCL2, unnamed protein product; phosducin-like pro	99.9
3uvt_A	111	Thioredoxin domain-containing protein 5; thioredox	99.89
3dxb_A	222	Thioredoxin N-terminally fused to PUF60(UHM); spli	99.89
2dml_A	130	Protein disulfide-isomerase A6; thioredoxin domain	99.89
2i1u_A	121	Thioredoxin, TRX, MPT46; redox protein, electron t	99.89
3ul3_B	128	Thioredoxin, thioredoxin-2; PTEX, oxidoreductase;	99.89
3fk8_A	133	Disulphide isomerase; APC61824.1, xylella fastidio	99.89
3h79_A	127	Thioredoxin-like protein; thioredoxin fold, cataly	99.89
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.88
3aps_A	122	DNAJ homolog subfamily C member 10; thioredoxin fo	99.88
1v98_A	140	Thioredoxin; oxidoreductase, structural genomics,	99.88
1x5e_A	126	Thioredoxin domain containing protein 1; TMX, TXND	99.88
2fwh_A	134	Thiol:disulfide interchange protein DSBD; thioredo	99.88
2trc_P	217	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	99.87
1oaz_A	123	Thioredoxin 1; immune system, antibody/complex, an	99.87
1mek_A	120	Protein disulfide isomerase; electron transport, r	99.87
3iv4_A	112	Putative oxidoreductase; APC23140, meticillin-resi	99.87
2kuc_A	130	Putative disulphide-isomerase; structural genomics	99.87
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	99.87
2es7_A	142	Q8ZP25_salty, putative thiol-disulfide isomerase a	99.86
1a0r_P	245	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	99.86
1zma_A	118	Bacterocin transport accessory protein; alpha-beta	99.85
2dj0_A	137	Thioredoxin-related transmembrane protein 2; AVLA2	99.85
2b5x_A	148	YKUV protein, TRXY; thioredoxin-like, oxidoreducta	99.85
3f9u_A	172	Putative exported cytochrome C biogenesis-related;	99.85
1zzo_A	136	RV1677; thioredoxin fold, structural genomics, PSI	99.85
3dml_A	116	Putative uncharacterized protein; thioredoxin, oxi	99.85
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	99.84
3lor_A	160	Thiol-disulfide isomerase and thioredoxins; PSI, M	99.84
1lu4_A	136	Soluble secreted antigen MPT53; thioredoxin-like f	99.84
2f9s_A	151	Thiol-disulfide oxidoreductase RESA; thioredoxin-l	99.84
2ju5_A	154	Thioredoxin disulfide isomerase; protein, oxidored	99.84
3eyt_A	158	Uncharacterized protein SPOA0173; thioredoxin-like	99.84
3or5_A	165	Thiol:disulfide interchange protein, thioredoxin p	99.84
1fo5_A	85	Thioredoxin; disulfide oxidoreductase, structural	99.84
2dj3_A	133	Protein disulfide-isomerase A4; protein ERP-72, ER	99.84
2lst_A	130	Thioredoxin; structural genomics, NEW YORK structu	99.73
1a8l_A	226	Protein disulfide oxidoreductase; PDI, thioredoxin	99.83
3kh7_A	176	Thiol:disulfide interchange protein DSBE; TRX-like	99.83
1wou_A	123	Thioredoxin -related protein, 14 kDa; electron tra	99.83
1nho_A	85	Probable thioredoxin; beta sheet, alpha helix, oxi	99.83
3ed3_A	298	Protein disulfide-isomerase MPD1; thioredoxin-like	99.83
3erw_A	145	Sporulation thiol-disulfide oxidoreductase A; thio	99.83
2lrn_A	152	Thiol:disulfide interchange protein; structural ge	99.83
3gl3_A	152	Putative thiol:disulfide interchange protein DSBE;	99.83
2r2j_A	382	Thioredoxin domain-containing protein 4; CRFS moti	99.83
2yj7_A	106	LPBCA thioredoxin; oxidoreductase; 1.65A {Syntheti	99.72
3hcz_A	148	Possible thiol-disulfide isomerase; APC61559.2, cy	99.82
2l5o_A	153	Putative thioredoxin; structural genomics, unknown	99.82
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	99.82
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	99.82
2lja_A	152	Putative thiol-disulfide oxidoreductase; structura	99.82
3q6o_A	244	Sulfhydryl oxidase 1; protein disulfide isomerase,	99.82
2b1k_A	168	Thiol:disulfide interchange protein DSBE; C-termin	99.82
3hdc_A	158	Thioredoxin family protein; ATCC53774, DSM 7210, ,	99.82
1kng_A	156	Thiol:disulfide interchange protein CYCY; thioredo	99.82
3ia1_A	154	THIO-disulfide isomerase/thioredoxin; oxidoreducta	99.82
3raz_A	151	Thioredoxin-related protein; structural genomics,	99.82
3kcm_A	154	Thioredoxin family protein; SGX, thioredoxin prote	99.81
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	99.81
3fkf_A	148	Thiol-disulfide oxidoreductase; structural genomic	99.81
2djj_A	121	PDI, protein disulfide-isomerase; thioredoxin fold	99.81
1sen_A	164	Thioredoxin-like protein P19; endoplasmic reticulu	99.81
1z6n_A	167	Hypothetical protein PA1234; alpha-beta-alpha sand	99.8
3fw2_A	150	Thiol-disulfide oxidoreductase; structural genomic	99.8
3lwa_A	183	Secreted thiol-disulfide isomerase; thioredoxin, P	99.8
3ewl_A	142	Uncharacterized conserved protein BF1870; alpha-be	99.8
4evm_A	138	Thioredoxin family protein; structural genomics, n	99.8
3eur_A	142	Uncharacterized protein; PSI2,MCSG, conserved prot	99.8
3ga4_A	178	Dolichyl-diphosphooligosaccharide-protein glycosyl	99.8
3ph9_A	151	Anterior gradient protein 3 homolog; thioredoxin f	99.79
1sji_A	350	Calsequestrin 2, calsequestrin, cardiac muscle iso	99.79
4fo5_A	143	Thioredoxin-like protein; AHPC/TSA family protein,	99.79
3us3_A	367	Calsequestrin-1; calcium-binding protein; 1.74A {O	99.78
3ha9_A	165	Uncharacterized thioredoxin-like protein; PSI, MCS	99.78
2lrt_A	152	Uncharacterized protein; structural genomics, thio	99.78
2cvb_A	188	Probable thiol-disulfide isomerase/thioredoxin; re	99.77
2h30_A	164	Thioredoxin, peptide methionine sulfoxide reductas	99.77
2ywm_A	229	Glutaredoxin-like protein; redox protein, structur	99.77
1jfu_A	186	Thiol:disulfide interchange protein TLPA; thioredo	99.77
2ywi_A	196	Hypothetical conserved protein; uncharacterized co	99.77
3t58_A	519	Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.	99.77
2hyx_A	352	Protein DIPZ; thioredoxin fold, jelly-roll, struct	99.77
2hls_A	243	Protein disulfide oxidoreductase; thioredoxin fold	99.77
3kp8_A	106	Vkorc1/thioredoxin domain protein; blood coagulati	99.76
2djk_A	133	PDI, protein disulfide-isomerase; thioredoxin fold	99.76
3uem_A	361	Protein disulfide-isomerase; thioredoxin-like doma	99.76
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	99.75
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	99.75
1a8l_A	226	Protein disulfide oxidoreductase; PDI, thioredoxin	99.75
2ls5_A	159	Uncharacterized protein; structural genomics, unkn	99.6
3u5r_E	218	Uncharacterized protein; structural genomics, PSI-	99.73
3ira_A	173	Conserved protein; methanosarcina mazei,structural	99.73
2ggt_A	164	SCO1 protein homolog, mitochondrial; copper chaper	99.73
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	99.72
2rli_A	171	SCO2 protein homolog, mitochondrial; copper protei	99.72
2fgx_A	107	Putative thioredoxin; NET3, NESG, GFT-glutaredoxin	99.72
1i5g_A	144	Tryparedoxin II; electron transport; HET: TS5; 1.4	99.71
3drn_A	161	Peroxiredoxin, bacterioferritin comigratory prote	99.7
3qcp_A	470	QSOX from trypanosoma brucei (tbqsox); ERV fold, t	99.7
2vup_A	190	Glutathione peroxidase-like protein; oxidoreductas	99.7
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	99.7
2c0g_A	248	ERP29 homolog, windbeutel protein; PDI-dbeta, PDI,	99.7
1ttz_A	87	Conserved hypothetical protein; structural genomic	99.7
1o8x_A	146	Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrot	99.7
1ilo_A	77	Conserved hypothetical protein MTH895; beta-alpha-	99.7
1o73_A	144	Tryparedoxin; electron transport, trypanosomatid,	99.7
2qc7_A	240	ERP31, ERP28, endoplasmic reticulum protein ERP29;	99.69
2dlx_A	153	UBX domain-containing protein 7; UAS domain, prote	99.69
3s9f_A	165	Tryparedoxin; thioredoxin fold, disulfide reductas	99.69
2k6v_A	172	Putative cytochrome C oxidase assembly protein; th	99.69
3cmi_A	171	Peroxiredoxin HYR1; thioredoxin-like fold, oxidore	99.69
2p31_A	181	CL683, glutathione peroxidase 7; thioredoxin fold,	99.68
2lus_A	143	Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carci	99.51
3dwv_A	187	Glutathione peroxidase-like protein; alpha beta, 3	99.68
2v1m_A	169	Glutathione peroxidase; selenium, selenocysteine,	99.68
1we0_A	187	Alkyl hydroperoxide reductase C; peroxiredoxin, AH	99.68
3kij_A	180	Probable glutathione peroxidase 8; human PDI-perox	99.67
1xvw_A	160	Hypothetical protein RV2238C/MT2298; thioredoxin f	99.67
2p5q_A	170	Glutathione peroxidase 5; thioredoxin fold, oxidor	99.67
2ywm_A	229	Glutaredoxin-like protein; redox protein, structur	99.66
2bmx_A	195	Alkyl hydroperoxidase C; peroxiredoxin, antioxidan	99.66
1zof_A	198	Alkyl hydroperoxide-reductase; decamer, toroide-sh	99.64
2jsy_A	167	Probable thiol peroxidase; solution structure, ant	99.64
2f8a_A	208	Glutathione peroxidase 1; thioredoxin fold, struct	99.63
1xvq_A	175	Thiol peroxidase; thioredoxin fold, structural gen	99.62
2gs3_A	185	PHGPX, GPX-4, phospholipid hydroperoxide glutathio	99.62
1uul_A	202	Tryparedoxin peroxidase homologue; peroxiredoxin,	99.61
1wjk_A	100	C330018D20RIK protein; glutaredoxin, thioredoxin f	99.61
2obi_A	183	PHGPX, GPX-4, phospholipid hydroperoxide glutathio	99.61
2i81_A	213	2-Cys peroxiredoxin; structural genomics consortiu	99.6
2h01_A	192	2-Cys peroxiredoxin; thioredoxin peroxidase, struc	99.6
2b7k_A	200	SCO1 protein; metallochaperone, cytochrome C oxida	99.6
2hls_A	243	Protein disulfide oxidoreductase; thioredoxin fold	99.6
1qmv_A	197	Human thioredoxin peroxidase-B; peroxiredoxin, sul	99.6
1xzo_A	174	BSSCO, hypothetical protein YPMQ; thioredoxin-like	99.59
3gkn_A	163	Bacterioferritin comigratory protein; BCP, PRX, at	99.59
1zye_A	220	Thioredoxin-dependent peroxide reductase; catenane	99.58
3me7_A	170	Putative uncharacterized protein; electron transfe	99.55
2e7p_A	116	Glutaredoxin; thioredoxin fold, poplar, electron t	99.55
3ztl_A	222	Thioredoxin peroxidase; oxidoreductase, reductase,	99.55
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	99.55
4g2e_A	157	Peroxiredoxin; redox protein, structural genomics,	99.54
2i3y_A	215	Epididymal secretory glutathione peroxidase; thior	99.54
3gyk_A	175	27KDA outer membrane protein; APC61738.2, siliciba	99.54
2k8s_A	80	Thioredoxin; dimer, structural genomics, PSI-2, pr	99.54
3ixr_A	179	Bacterioferritin comigratory protein; alpha beta p	99.54
2a4v_A	159	Peroxiredoxin DOT5; yeast nuclear thiol peroxidase	99.53
1ego_A	85	Glutaredoxin; electron transport; NMR {Escherichia	99.51
3zrd_A	200	Thiol peroxidase; oxidoreductase, 2Cys peroxiredox	99.5
2yzh_A	171	Probable thiol peroxidase; redox protein, antioxid	99.5
2r37_A	207	Glutathione peroxidase 3; plasma, structural genom	99.5
3uem_A	361	Protein disulfide-isomerase; thioredoxin-like doma	99.5
1psq_A	163	Probable thiol peroxidase; structural genomics, NY	99.5
1q98_A	165	Thiol peroxidase, TPX; structural genomics, NYSGXR	99.49
2c0d_A	221	Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, th	99.49
1eej_A	216	Thiol:disulfide interchange protein; oxidoreductas	99.49
4gqc_A	164	Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, f	99.48
3kp9_A	291	Vkorc1/thioredoxin domain protein; warfarin, disul	99.47
3p7x_A	166	Probable thiol peroxidase; thioredoxin fold, oxido	99.47
1n8j_A	186	AHPC, alkyl hydroperoxide reductase C22 protein; p	99.47
2pn8_A	211	Peroxiredoxin-4; thioredoxin, oxidoreductase, stru	99.45
4hde_A	170	SCO1/SENC family lipoprotein; structural genomics,	99.44
1t3b_A	211	Thiol:disulfide interchange protein DSBC; oxidored	99.4
3qpm_A	240	Peroxiredoxin; oxidoreductase, thioredoxin fold, p	99.4
2wfc_A	167	Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidan	99.39
3a2v_A	249	Probable peroxiredoxin; thioredoxin peroxidase, hy	99.39
3mng_A	173	Peroxiredoxin-5, mitochondrial; peroxidase, PRXV,	99.38
1nm3_A	241	Protein HI0572; hybrid, peroxiredoxin, glutaredoxi	99.37
3h93_A	192	Thiol:disulfide interchange protein DSBA; disulfid	99.34
3tjj_A	254	Peroxiredoxin-4; thioredoxin fold, sulfenylation,	99.32
1r7h_A	75	NRDH-redoxin; thioredoxin, glutaredoxin, redox pro	99.32
1v58_A	241	Thiol:disulfide interchange protein DSBG; reduced	99.32
3hd5_A	195	Thiol:disulfide interchange protein DSBA; protein	99.31
3uma_A	184	Hypothetical peroxiredoxin protein; nysgrc, PSI bi	99.3
1h75_A	81	Glutaredoxin-like protein NRDH; electron transport	99.3
1tp9_A	162	Peroxiredoxin, PRX D (type II); oligomer, thioredo	99.29
4dvc_A	184	Thiol:disulfide interchange protein DSBA; pilus as	99.26
3keb_A	224	Probable thiol peroxidase; structural genomics, AP	99.26
1xcc_A	220	1-Cys peroxiredoxin; unknown function, structural	99.24
1prx_A	224	HORF6; peroxiredoxin, hydrogen peroxide, redox reg	99.22
2v2g_A	233	Peroxiredoxin 6; oxidoreductase, antioxidant enzym	99.22
2lqo_A	92	Putative glutaredoxin RV3198.1/MT3292; TRX fold, o	99.21
1kte_A	105	Thioltransferase; redox-active center, electron tr	99.2
3hz8_A	193	Thiol:disulfide interchange protein DSBA; thiol-ox	99.19
2hze_A	114	Glutaredoxin-1; thioredoxin fold, arsenic, dimethy	99.15
2pwj_A	171	Mitochondrial peroxiredoxin; alpha and beta protei	99.15
3gv1_A	147	Disulfide interchange protein; neisseria gonorrhoe	99.15
2cq9_A	130	GLRX2 protein, glutaredoxin 2; glutathione-S-trans	99.14
2znm_A	195	Thiol:disulfide interchange protein DSBA; thioredo	99.12
4eo3_A	322	Bacterioferritin comigratory protein/NADH dehydro;	99.11
3ic4_A	92	Glutaredoxin (GRX-1); structural genomics, PSI, MC	99.11
3l9v_A	189	Putative thiol-disulfide isomerase or thioredoxin;	99.11
3feu_A	185	Putative lipoprotein; alpha-beta structure, struct	99.1
3c1r_A	118	Glutaredoxin-1; oxidized form, oxidoreductase, cyt	99.06
3sbc_A	216	Peroxiredoxin TSA1; alpha-beta fold, peroxidase, c	99.06
2rem_A	193	Disulfide oxidoreductase; disulfide oxidoreductase	99.05
3rhb_A	113	ATGRXC5, glutaredoxin-C5, chloroplastic; thioredox	99.03
3qmx_A	99	Glutaredoxin A, glutaredoxin 3; electron transport	99.02
3tue_A	219	Tryparedoxin peroxidase; thioredoxin fold, peroxir	99.02
2ht9_A	146	Glutaredoxin-2; thioredoxin fold, iron-sulfur clus	99.01
2ec4_A	178	FAS-associated factor 1; UAS domain, protein FAF1,	99.01
2klx_A	89	Glutaredoxin; thioredoxin type domain, ssgcid, ele	99.0
3l9s_A	191	Thiol:disulfide interchange protein; thioredoxin-f	98.99
3nzn_A	103	Glutaredoxin; structural genomics, PSI2, MCSG, pro	98.99
2yan_A	105	Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {H	98.98
4f9z_D	227	Endoplasmic reticulum resident protein 27; thiored	98.93
3msz_A	89	Glutaredoxin 1; alpha-beta sandwich, center for st	98.92
1z6m_A	175	Conserved hypothetical protein; structural genomic	98.92
1fov_A	82	Glutaredoxin 3, GRX3; active site disulfide, CIS P	98.9
2l4c_A	124	Endoplasmic reticulum resident protein 27; ERP27,	98.88
2khp_A	92	Glutaredoxin; thioredoxin type domain, ssgcid, ele	98.83
3ctg_A	129	Glutaredoxin-2; reduced form, electron transport,	98.82
3h8q_A	114	Thioredoxin reductase 3; oxidoreductase, structura	98.78
4f82_A	176	Thioredoxin reductase; structural genomics, niaid,	98.71
1un2_A	197	DSBA, thiol-disulfide interchange protein; disulfi	98.69
3gha_A	202	Disulfide bond formation protein D; BDBD, DSBA-lik	98.69
2wci_A	135	Glutaredoxin-4; redox-active center, iron-sulfur c	98.66
3f4s_A	226	Alpha-DSBA1, putative uncharacterized protein; thi	98.56
4f9z_D	227	Endoplasmic reticulum resident protein 27; thiored	98.53
1wik_A	109	Thioredoxin-like protein 2; picot homology 2 domai	98.52
3zyw_A	111	Glutaredoxin-3; metal binding protein; 1.84A {Homo	98.52
3ipz_A	109	Monothiol glutaredoxin-S14, chloroplastic; electro	98.49
1xiy_A	182	Peroxiredoxin, pfaop; alpha-aneurysm, thioredoxin	98.47
3c7m_A	195	Thiol:disulfide interchange protein DSBA-like; red	98.43
3l4n_A	127	Monothiol glutaredoxin-6; C-terminal domain of GRX	98.34
2axo_A	270	Hypothetical protein ATU2684; alpha beta protein.,	98.33
3bci_A	186	Disulfide bond protein A; thiol-disulfide oxidored	98.3
2ct6_A	111	SH3 domain-binding glutamic acid-rich-like protein	98.29
3gx8_A	121	Monothiol glutaredoxin-5, mitochondrial; TRX fold,	98.28
2wem_A	118	Glutaredoxin-related protein 5; chromosome 14 open	98.27
2xhf_A	171	Peroxiredoxin 5; oxidoreductase, antioxidant enzym	98.26
3kzq_A	208	Putative uncharacterized protein VP2116; protein w	98.24
1t1v_A	93	SH3BGRL3, SH3 domain-binding glutamic acid-rich pr	98.22
1sji_A	350	Calsequestrin 2, calsequestrin, cardiac muscle iso	98.21
1aba_A	87	Glutaredoxin; electron transport; HET: MES; 1.45A	98.17
2h8l_A	252	Protein disulfide-isomerase A3; thioredoxin-like f	98.17
1nm3_A	241	Protein HI0572; hybrid, peroxiredoxin, glutaredoxi	98.15
3bj5_A	147	Protein disulfide-isomerase; thioredoxin fold, cha	98.14
3gmf_A	205	Protein-disulfide isomerase; oxidoreductase, PSI-2	98.13
2in3_A	216	Hypothetical protein; DSBA family, FRNE-like subfa	98.13
3us3_A	367	Calsequestrin-1; calcium-binding protein; 1.74A {O	98.09
2r2j_A	382	Thioredoxin domain-containing protein 4; CRFS moti	97.93
3ec3_A	250	Protein disulfide-isomerase A4; thioredoxin-like f	97.92
1u6t_A	121	SH3 domain-binding glutamic acid-rich-like protein	97.83
3tdg_A	273	DSBG, putative uncharacterized protein; thioredoxi	97.76
2jad_A	362	Yellow fluorescent protein glutaredoxin fusion pro	97.73
2wul_A	118	Glutaredoxin related protein 5; chromosome 14 open	97.71
2h8l_A	252	Protein disulfide-isomerase A3; thioredoxin-like f	97.57
3ec3_A	250	Protein disulfide-isomerase A4; thioredoxin-like f	97.57
2kok_A	120	Arsenate reductase; brucellosis, zoonotic, oxidore	97.49
3q6o_A	244	Sulfhydryl oxidase 1; protein disulfide isomerase,	97.26
2imf_A	203	HCCA isomerase, 2-hydroxychromene-2-carboxylate is	97.18
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	97.15
1rw1_A	114	Conserved hypothetical protein YFFB; thioredoxin f	97.11
3ed3_A	298	Protein disulfide-isomerase MPD1; thioredoxin-like	97.07
1t4y_A	105	Adaptive-response sensory-kinase SASA; alpha/beta	96.89
3gn3_A	182	Putative protein-disulfide isomerase; MCSG, PSI, s	96.84
3kgk_A	110	Arsenical resistance operon trans-acting represso;	96.57
3ktb_A	106	Arsenical resistance operon trans-acting represso;	96.41
1z3e_A	132	Regulatory protein SPX; bacterial transcription re	96.08
3t58_A	519	Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.	96.04
3l78_A	120	Regulatory protein SPX; transcription, transcripti	95.57
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	95.26
3fz4_A	120	Putative arsenate reductase; APC61768, structural	95.11
2g2q_A	124	Glutaredoxin-2; thioredoxin-fold, oxidoreductase,	94.84
3gn3_A	182	Putative protein-disulfide isomerase; MCSG, PSI, s	94.83
3gl5_A	239	Putative DSBA oxidoreductase SCO1869; probable DSB	94.66
3gkx_A	120	Putative ARSC family related protein; ARSC family	94.27
1wwj_A	105	Circadian clock protein KAIB; 1.90A {Synechocystis	94.18
1s3c_A	141	Arsenate reductase; ARSC, arsenite, oxidoreductase	93.6
3rdw_A	121	Putative arsenate reductase; structural genomics,	93.17
1un2_A	197	DSBA, thiol-disulfide interchange protein; disulfi	92.19
1r4w_A	226	Glutathione S-transferase, mitochondrial; glutathi	91.72
3ir4_A	218	Glutaredoxin 2; glutathione, IDP00895, structural	91.25
3fz5_A	202	Possible 2-hydroxychromene-2-carboxylate isomeras;	91.06
3f0i_A	119	Arsenate reductase; structural genomics, IDP01300,	90.86
3fhk_A	147	UPF0403 protein YPHP; disulfide isomerase, thiored	89.77
4f03_A	253	Glutathione transferase; GST fold; 1.80A {Phaneroc	89.74
4g9p_A	406	4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth;	89.69
3lyk_A	216	Stringent starvation protein A homolog; structural	88.78
1r4w_A	226	Glutathione S-transferase, mitochondrial; glutathi	87.53
4hoj_A	210	REGF protein; GST, glutathione S-transferase, enzy	86.57
3rpp_A	234	Glutathione S-transferase kappa 1; glutathione tra	85.56
4dej_A	231	Glutathione S-transferase related protein; transfe	85.34
1s3a_A	102	NADH-ubiquinone oxidoreductase B8 subunit; CI-B8,	85.15
2r4v_A	247	XAP121, chloride intracellular channel protein 2;	84.5
2cvd_A	198	Glutathione-requiring prostaglandin D synthase; gl	83.95
1z9h_A	290	Membrane-associated prostaglandin E synthase-2; me	83.6
4g10_A	265	Glutathione S-transferase homolog; thioredoxin fol	83.58
2gsq_A	202	Squid GST, glutathione S-transferase; squid digest	83.36
2on7_A	206	Nagst-1, Na glutathione S-transferase 1; hookworm;	82.91
4glt_A	225	Glutathione S-transferase-like protein; structural	82.52
2on5_A	206	Nagst-2, Na glutathione S-transferase 2; hookworm;	82.04
2ws2_A	204	NU-class GST, glutathione S-transferase; parasite,	81.73
3vln_A	241	GSTO-1, glutathione S-transferase omega-1; GST fol	81.23
2ahe_A	267	Chloride intracellular channel protein 4; glutathi	80.87
1zl9_A	207	GST class-sigma, glutathione S-transferase 5; glut	80.47
3lxz_A	229	Glutathione S-transferase family protein; structur	80.46
3niv_A	222	Glutathione S-transferase; structural genomics, PS	80.39
1tw9_A	206	Glutathione S-transferase 2; 1.71A {Heligmosomoide	80.24
1xg8_A	111	Hypothetical protein SA0798; structural genomics,	80.22

>3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei}

Probab=99.97  E-value=9.2e-29  Score=148.99  Aligned_cols=103  Identities=42%  Similarity=0.751  Sum_probs=95.1

Q ss_pred             eEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhhhhhCCCcceeEEEE
Q 032502           26 VSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFF  105 (139)
Q Consensus        26 ~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~  105 (139)
                      +..+.+.++|++.+..+  ++++++|.||++||++|+.+.|.+.++++.++++.|+.+|++++++++++|+|.++||+++
T Consensus         2 V~~i~~~~~f~~~l~~~--~~k~vvv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~V~~~PT~~~   79 (105)
T 3zzx_A            2 VYQVKDQEDFTKQLNEA--GNKLVVIDFYATWCGPCKMIAPKLEELSQSMSDVVFLKVDVDECEDIAQDNQIACMPTFLF   79 (105)
T ss_dssp             CEECCSHHHHHHHHHHT--TTSEEEEEEECTTCHHHHHHHHHHHHHHHHCTTEEEEEEETTTCHHHHHHTTCCBSSEEEE
T ss_pred             eEEeCCHHHHHHHHHhc--CCCEEEEEEECCCCCCccCCCcchhhhhhccCCeEEEEEecccCHHHHHHcCCCeecEEEE
Confidence            56788889999888633  5789999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCeEEEEEeCCChHHHHHHHHHH
Q 032502          106 LKDGQQVDKLVGANKPELQKKVAAA  130 (139)
Q Consensus       106 ~~~g~~~~~~~g~~~~~l~~~i~~~  130 (139)
                      |++|+++.++.|.+.++|.++|++.
T Consensus        80 ~~~G~~v~~~~G~~~~~l~~~i~k~  104 (105)
T 3zzx_A           80 MKNGQKLDSLSGANYDKLLELVEKN  104 (105)
T ss_dssp             EETTEEEEEEESCCHHHHHHHHHHH
T ss_pred             EECCEEEEEEeCcCHHHHHHHHHhc
Confidence            9999999999999989999988764

>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A

Probab=99.96  E-value=4.9e-28  Score=152.18  Aligned_cols=139  Identities=71%  Similarity=1.215  Sum_probs=115.9

Q ss_pred             CCcccCCccCCCCCCCCCcccCCCceEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEE
Q 032502            1 MGTCLSKRQHDEEDGEHPVEFAGGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMF   80 (139)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~   80 (139)
                      |+.|.............+....++.+..+.+.++|++.+..+..++++++|+||++||++|+.+.|.+++++++++++.|
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~k~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~v~~   80 (139)
T 3d22_A            1 MGLCLAKRNHDADDDEPHIELAGGNVHLITTKERWDQKLSEASRDGKIVLANFSARWCGPSRQIAPYYIELSENYPSLMF   80 (139)
T ss_dssp             -CCEEC---------CCCCCSSCTTCEEECSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEE
T ss_pred             CcccccccccccCCccccccccCCcEEEeCCHHHHHHHHHHHhhcCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCEE
Confidence            34444333333344445566777889999999999999987767799999999999999999999999999999989999


Q ss_pred             EEEeCCcchhhhhhCCCcceeEEEEEeCCeEEEEEeCCChHHHHHHHHHHhhccCCCCC
Q 032502           81 LLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKVAAAVDSVVPSQK  139 (139)
Q Consensus        81 ~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~l~~~i~~~~~~~~~~~k  139 (139)
                      +.+|++++++++++|+|.++||++++++|+++.++.|.+.++|.++|.+++...+++.|
T Consensus        81 ~~v~~~~~~~~~~~~~v~~~Pt~~~~~~G~~~~~~~G~~~~~l~~~l~~~~~~~~~~~~  139 (139)
T 3d22_A           81 LVIDVDELSDFSASWEIKATPTFFFLRDGQQVDKLVGANKPELHKKITAILDSLPPSDK  139 (139)
T ss_dssp             EEEETTTSHHHHHHTTCCEESEEEEEETTEEEEEEESCCHHHHHHHHHHHHHTSCTTTC
T ss_pred             EEEeCcccHHHHHHcCCCcccEEEEEcCCeEEEEEeCCCHHHHHHHHHHHhccCCCCCC
Confidence            99999999999999999999999999999999999999889999999999988777654

>2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii}

Probab=99.95  E-value=7.7e-27  Score=147.80  Aligned_cols=109  Identities=17%  Similarity=0.316  Sum_probs=98.7

Q ss_pred             ceEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCC-cEEEEEeCCcchhhhhhCCCcceeEE
Q 032502           25 NVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVDELVEFSTSWDIKATPTF  103 (139)
Q Consensus        25 ~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~-v~~~~vd~~~~~~~~~~~~v~~~Pt~  103 (139)
                      .++.+.+.++|++.+..  .++++|||.||++||++|+.+.|.|+++++++++ +.|+.+|+|++++++.+|+|.++||+
T Consensus        22 mv~~l~t~~~f~~~v~~--~~~k~VVVdF~A~WCgPCk~m~PvleelA~e~~~~v~f~kVDVDe~~e~a~~y~V~siPT~   99 (160)
T 2av4_A           22 MLQHLNSGWAVDQAIVN--EDERLVCIRFGHDYDPDCMKMDELLYKVADDIKNFCVIYLVDITEVPDFNTMYELYDPVSV   99 (160)
T ss_dssp             CCEECCSHHHHHHHHHH--CSSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTCCTTTTTTTCCSSEEE
T ss_pred             hhhccCCHHHHHHHHHh--cCCCEEEEEEECCCChhHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHcCCCCCCEE
Confidence            48899999999988842  3578999999999999999999999999999976 99999999999999999999999999


Q ss_pred             EEEeCCeEE--E-------EEeCC-C-hHHHHHHHHHHhhccC
Q 032502          104 FFLKDGQQV--D-------KLVGA-N-KPELQKKVAAAVDSVV  135 (139)
Q Consensus       104 ~~~~~g~~~--~-------~~~g~-~-~~~l~~~i~~~~~~~~  135 (139)
                      ++|++|+.+  .       +..|. . .++|.++|+.+++.+.
T Consensus       100 ~fFk~G~~v~vd~Gtgd~~k~vGa~~~k~~l~~~ie~~~r~a~  142 (160)
T 2av4_A          100 MFFYRNKHMMIDLGTGNNNKINWPMNNKQEFIDIVETIFRGAR  142 (160)
T ss_dssp             EEEETTEEEEEECSSSCCSCBCSCCCCHHHHHHHHHHHHHHHH
T ss_pred             EEEECCEEEEEecCCCCcCeEEeecCCHHHHHHHHHHHHHHhh
Confidence            999999998  4       78888 5 8999999999887654

>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1

Probab=99.95  E-value=5e-26  Score=140.72  Aligned_cols=114  Identities=43%  Similarity=0.904  Sum_probs=104.2

Q ss_pred             CcccCCCceEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhhhhhCCC
Q 032502           18 PVEFAGGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDI   97 (139)
Q Consensus        18 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v   97 (139)
                      +-....+.+..+.+.++++..+..+..++++++|+||++||++|+.+.|.|++++++++++.|+.+|++++.+++++|+|
T Consensus        10 ~~~~~~~~v~~l~~~~~~~~~l~~~~~~~k~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~v~~~~vd~d~~~~l~~~~~v   89 (124)
T 1xfl_A           10 EMASEEGQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPNVLFLKVDTDELKSVASDWAI   89 (124)
T ss_dssp             -CCCCCSCCEEESSHHHHHHHHHHHHHTTCEEEEEEECTTCHHHHHHHHHHHHHHHHCSSEEEEEEETTTSHHHHHHTTC
T ss_pred             hhhcCCCcEEEeCCHHHHHHHHHHhhhcCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCcEEEEEECccCHHHHHHcCC
Confidence            34455667899999999999998776789999999999999999999999999999999999999999999999999999


Q ss_pred             cceeEEEEEeCCeEEEEEeCCChHHHHHHHHHHh
Q 032502           98 KATPTFFFLKDGQQVDKLVGANKPELQKKVAAAV  131 (139)
Q Consensus        98 ~~~Pt~~~~~~g~~~~~~~g~~~~~l~~~i~~~~  131 (139)
                      .++||++++++|+++.++.|.+.++|.++|++++
T Consensus        90 ~~~Pt~~~~~~G~~~~~~~G~~~~~l~~~l~~~l  123 (124)
T 1xfl_A           90 QAMPTFMFLKEGKILDKVVGAKKDELQSTIAKHL  123 (124)
T ss_dssp             CSSSEEEEEETTEEEEEEESCCHHHHHHHHHHHC
T ss_pred             CccCEEEEEECCEEEEEEeCCCHHHHHHHHHHhc
Confidence            9999999999999999999998889999998875

>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A

Probab=99.94  E-value=1.5e-25  Score=135.66  Aligned_cols=110  Identities=42%  Similarity=0.826  Sum_probs=100.1

Q ss_pred             CCceEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCC-CcEEEEEeCCcchhhhhhCCCccee
Q 032502           23 GGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP-SLMFLLVDVDELVEFSTSWDIKATP  101 (139)
Q Consensus        23 ~~~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~-~v~~~~vd~~~~~~~~~~~~v~~~P  101 (139)
                      |+.+..+.+.++|++.+..+...+++++|+||++||++|+.+.|.++++++.++ ++.|+.+|++.+..++++|+|.++|
T Consensus         1 g~~v~~i~~~~~~~~~l~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~P   80 (112)
T 1ep7_A            1 GGSVIVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDAVAAVAEAAGITAMP   80 (112)
T ss_dssp             CCSEEEECSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTTHHHHHHHTCCBSS
T ss_pred             CCcEEEecCHHHHHHHHHhhcccCCeEEEEEECCCCHHHHHHHHHHHHHHHHcCCCeEEEEEECCchHHHHHHcCCCccc
Confidence            456888889999999887544448999999999999999999999999999998 6999999999999999999999999


Q ss_pred             EEEEEeCCeEEEEEeCCChHHHHHHHHHHhh
Q 032502          102 TFFFLKDGQQVDKLVGANKPELQKKVAAAVD  132 (139)
Q Consensus       102 t~~~~~~g~~~~~~~g~~~~~l~~~i~~~~~  132 (139)
                      |++++++|+++.++.|.+.++|.++|+++++
T Consensus        81 t~~~~~~G~~~~~~~G~~~~~l~~~l~~~l~  111 (112)
T 1ep7_A           81 TFHVYKDGVKADDLVGASQDKLKALVAKHAA  111 (112)
T ss_dssp             EEEEEETTEEEEEEESCCHHHHHHHHHHHHC
T ss_pred             EEEEEECCeEEEEEcCCCHHHHHHHHHHHhc
Confidence            9999999999999999988999999998864

>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A

Probab=99.94  E-value=2.1e-25  Score=136.14  Aligned_cols=113  Identities=43%  Similarity=0.883  Sum_probs=102.7

Q ss_pred             CCCceEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhhhhhCCCccee
Q 032502           22 AGGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATP  101 (139)
Q Consensus        22 ~~~~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P  101 (139)
                      .++.+..+.+.+++++.+..+..++++++|+||++||++|+.+.|.++++++.++++.|+.+|++.++.++++|++.++|
T Consensus         4 ~~~~v~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~P   83 (118)
T 2vm1_A            4 EEGAVIACHTKQEFDTHMANGKDTGKLVIIDFTASWCGPCRVIAPVFAEYAKKFPGAIFLKVDVDELKDVAEAYNVEAMP   83 (118)
T ss_dssp             -CCCEEECCSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTSHHHHHHTTCCSBS
T ss_pred             CCCceEEecCHHHHHHHHHhcccCCCEEEEEEECCCCHhHHHHhHHHHHHHHHCCCcEEEEEEcccCHHHHHHcCCCcCc
Confidence            34578888899999999987766789999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEeCCeEEEEEeCCChHHHHHHHHHHhhcc
Q 032502          102 TFFFLKDGQQVDKLVGANKPELQKKVAAAVDSV  134 (139)
Q Consensus       102 t~~~~~~g~~~~~~~g~~~~~l~~~i~~~~~~~  134 (139)
                      |++++++|+++.++.|.+.++|.++|.++++..
T Consensus        84 t~~~~~~g~~~~~~~g~~~~~l~~~l~~~~~~~  116 (118)
T 2vm1_A           84 TFLFIKDGEKVDSVVGGRKDDIHTKIVALMGSA  116 (118)
T ss_dssp             EEEEEETTEEEEEEESCCHHHHHHHHHHHHC--
T ss_pred             EEEEEeCCeEEEEecCCCHHHHHHHHHHHhccc
Confidence            999999999999999998899999999988654

>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1

Probab=99.94  E-value=2.4e-25  Score=134.01  Aligned_cols=105  Identities=32%  Similarity=0.593  Sum_probs=95.2

Q ss_pred             ceEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhhhhhCCCcceeEEE
Q 032502           25 NVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFF  104 (139)
Q Consensus        25 ~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~  104 (139)
                      ++..+.+.++|++.+..  .++++++|+||++||++|+.+.|.+++++++++++.|+.+|++++++++++|++.++||++
T Consensus         2 ~v~~i~~~~~~~~~~~~--~~~~~v~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~   79 (107)
T 1gh2_A            2 GVKPVGSDPDFQPELSG--AGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQCQGTAATNNISATPTFQ   79 (107)
T ss_dssp             CEEEECSGGGHHHHHHH--TTTSCEEEEEECSSCHHHHHHHHHHHHHHHHCTTSEEEEEETTTSHHHHHHTTCCSSSEEE
T ss_pred             ceEEecCHHHHHHHHHh--CCCCEEEEEEECCCChhhHHHHHHHHHHHHHCCCcEEEEEECccCHHHHHhcCCCcccEEE
Confidence            46778888999887753  3589999999999999999999999999999988999999999999999999999999999


Q ss_pred             EEeCCeEEEEEeCCChHHHHHHHHHHh
Q 032502          105 FLKDGQQVDKLVGANKPELQKKVAAAV  131 (139)
Q Consensus       105 ~~~~g~~~~~~~g~~~~~l~~~i~~~~  131 (139)
                      ++++|+.+.++.|...++|.++|++++
T Consensus        80 ~~~~G~~~~~~~G~~~~~l~~~l~~~l  106 (107)
T 1gh2_A           80 FFRNKVRIDQYQGADAVGLEEKIKQHL  106 (107)
T ss_dssp             EEETTEEEEEEESSCHHHHHHHHHHHH
T ss_pred             EEECCeEEEEEeCCCHHHHHHHHHHhc
Confidence            999999999999996677999988875

>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B

Probab=99.94  E-value=2.6e-25  Score=134.48  Aligned_cols=104  Identities=38%  Similarity=0.756  Sum_probs=93.6

Q ss_pred             CceEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhhhhhCCCcceeEE
Q 032502           24 GNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTF  103 (139)
Q Consensus        24 ~~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~  103 (139)
                      +......+.++|+..+    .++++++|+||++||++|+.+.|.+++++++++++.|+.+|+++++.++++|+|.++||+
T Consensus         6 ~~~~~~~~~~~f~~~~----~~~k~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pt~   81 (109)
T 3f3q_A            6 HMVTQFKTASEFDSAI----AQDKLVVVDFYATWCGPCKMIAPMIEKFSEQYPQADFYKLDVDELGDVAQKNEVSAMPTL   81 (109)
T ss_dssp             CCCEECCSHHHHHHHT----TSSSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTCHHHHHHTTCCSSSEE
T ss_pred             ccccCCCCHHHHHHHH----hcCCEEEEEEECCcCHhHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHcCCCccCEE
Confidence            3345556777777666    568999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCeEEEEEeCCChHHHHHHHHHHh
Q 032502          104 FFLKDGQQVDKLVGANKPELQKKVAAAV  131 (139)
Q Consensus       104 ~~~~~g~~~~~~~g~~~~~l~~~i~~~~  131 (139)
                      +++++|+++.++.|.+.++|.++|++++
T Consensus        82 ~~~~~G~~~~~~~G~~~~~l~~~i~~~l  109 (109)
T 3f3q_A           82 LLFKNGKEVAKVVGANPAAIKQAIAANA  109 (109)
T ss_dssp             EEEETTEEEEEEESSCHHHHHHHHHHHC
T ss_pred             EEEECCEEEEEEeCCCHHHHHHHHHhhC
Confidence            9999999999999998899999988763

>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1

Probab=99.94  E-value=2.6e-25  Score=134.76  Aligned_cols=110  Identities=45%  Similarity=0.877  Sum_probs=102.3

Q ss_pred             CCceEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhhhhhCCCcceeE
Q 032502           23 GGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPT  102 (139)
Q Consensus        23 ~~~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt  102 (139)
                      ++.+..+.+.+++++.+..+..++++++|+||++||++|+.+.+.++++++.++++.|+.+|+++++.++++|++.++||
T Consensus         3 ~~~v~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~v~~~~~~~~~~~~~v~~~Pt   82 (113)
T 1ti3_A            3 EGQVIACHTVDTWKEHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFPNVTFLKVDVDELKAVAEEWNVEAMPT   82 (113)
T ss_dssp             CCCEEEECSHHHHHHHHHHHTTSSSEEEEEEECSSCHHHHHHHHHHHHHHHHCSSEEEEEEETTTCHHHHHHHHCSSTTE
T ss_pred             CCceeEeccHHHHHHHHHHhhhcCCeEEEEEECCCCHHHHHHHHHHHHHHHhCCCcEEEEEEccccHHHHHhCCCCcccE
Confidence            46788899999999999877667899999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCeEEEEEeCCChHHHHHHHHHHhh
Q 032502          103 FFFLKDGQQVDKLVGANKPELQKKVAAAVD  132 (139)
Q Consensus       103 ~~~~~~g~~~~~~~g~~~~~l~~~i~~~~~  132 (139)
                      ++++++|+++.++.|.+.++|.++|.+++.
T Consensus        83 ~~~~~~G~~~~~~~g~~~~~l~~~l~~~~~  112 (113)
T 1ti3_A           83 FIFLKDGKLVDKTVGADKDGLPTLVAKHAT  112 (113)
T ss_dssp             EEEEETTEEEEEEECCCTTHHHHHHHHHHH
T ss_pred             EEEEeCCEEEEEEecCCHHHHHHHHHHhhc
Confidence            999999999999999888899999998864

>2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris}

Probab=99.94  E-value=1.1e-25  Score=140.26  Aligned_cols=105  Identities=16%  Similarity=0.255  Sum_probs=93.7

Q ss_pred             eEEeechhHHHHHHHHHhhCCCEEEEEEeCCCC--hhhhhhhHhHHHHHHhCC-CcEEEEEeCCcchhhhhhCCCcceeE
Q 032502           26 VSLVTTKDIWDQKMSEASKEGKIVIANFSATWC--GPCRMIAPFFSELSEKYP-SLMFLLVDVDELVEFSTSWDIKATPT  102 (139)
Q Consensus        26 ~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C--~~C~~~~~~l~~~~~~~~-~v~~~~vd~~~~~~~~~~~~v~~~Pt  102 (139)
                      .+.+ +.++|+..+.   ..++++||.||++||  ++|+.+.|.|++++++|. .++|+.+|.|++++++.+|+|+++||
T Consensus        17 ~~~v-t~~~F~~~v~---~~~~~vlVdF~A~wCr~gpCk~iaPvleela~e~~~~v~~~KVdvDe~~~la~~ygV~siPT   92 (137)
T 2qsi_A           17 PTLV-DEATVDDFIA---HSGKIVVLFFRGDAVRFPEAADLAVVLPELINAFPGRLVAAEVAAEAERGLMARFGVAVCPS   92 (137)
T ss_dssp             CEEE-CTTTHHHHHH---TSSSEEEEEECCCTTTCTTHHHHHHHHHHHHHTSTTTEEEEEECGGGHHHHHHHHTCCSSSE
T ss_pred             Cccc-CHhHHHHHHh---cCCCcEEEEEeCCccCCCchhhHHhHHHHHHHHccCCcEEEEEECCCCHHHHHHcCCccCCE
Confidence            3444 5688888773   334599999999999  999999999999999996 59999999999999999999999999


Q ss_pred             EEEEeCCeEEEEEeCC-ChHHHHHHHHHHhhcc
Q 032502          103 FFFLKDGQQVDKLVGA-NKPELQKKVAAAVDSV  134 (139)
Q Consensus       103 ~~~~~~g~~~~~~~g~-~~~~l~~~i~~~~~~~  134 (139)
                      +++|++|+++.+..|. +.++|.++|++++..+
T Consensus        93 lilFkdG~~v~~~vG~~~k~~l~~~l~~~l~~~  125 (137)
T 2qsi_A           93 LAVVQPERTLGVIAKIQDWSSYLAQIGAMLAEV  125 (137)
T ss_dssp             EEEEECCEEEEEEESCCCHHHHHHHHHHHHHHH
T ss_pred             EEEEECCEEEEEEeCCCCHHHHHHHHHHHhccc
Confidence            9999999999999999 8899999999888553

>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C*

Probab=99.93  E-value=2.5e-25  Score=136.01  Aligned_cols=104  Identities=42%  Similarity=0.821  Sum_probs=94.2

Q ss_pred             eEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhhhhhCCCcceeEEEE
Q 032502           26 VSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFF  105 (139)
Q Consensus        26 ~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~  105 (139)
                      -....+.++|++.+...  ++++++|+||++||++|+.+.|.+++++++++++.|+.+|++++++++++|+|.++||+++
T Consensus        13 ~~~~~t~~~f~~~l~~~--~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~   90 (116)
T 3qfa_C           13 VKQIESKTAFQEALDAA--GDKLVVVDFSATWCGPSKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASECEVKSMPTFQF   90 (116)
T ss_dssp             CBCCCCHHHHHHHHHHH--TTSCEEEEEECTTCHHHHHHHHHHHHHHTTCTTSEEEEEETTTTHHHHHHTTCCSSSEEEE
T ss_pred             ccCCCCHHHHHHHHHhc--CCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHcCCccccEEEE
Confidence            34456788888877532  6899999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCeEEEEEeCCChHHHHHHHHHHh
Q 032502          106 LKDGQQVDKLVGANKPELQKKVAAAV  131 (139)
Q Consensus       106 ~~~g~~~~~~~g~~~~~l~~~i~~~~  131 (139)
                      +++|+++.++.|.+.++|.++|++++
T Consensus        91 ~~~G~~~~~~~G~~~~~l~~~l~~~l  116 (116)
T 3qfa_C           91 FKKGQKVGEFSGANKEKLEATINELV  116 (116)
T ss_dssp             ESSSSEEEEEESCCHHHHHHHHHHHC
T ss_pred             EeCCeEEEEEcCCCHHHHHHHHHHhC
Confidence            99999999999999999999998764

>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1

Probab=99.93  E-value=9.9e-25  Score=135.11  Aligned_cols=104  Identities=27%  Similarity=0.553  Sum_probs=96.4

Q ss_pred             eEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhhhhhCCCcceeEEEE
Q 032502           26 VSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFF  105 (139)
Q Consensus        26 ~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~  105 (139)
                      +..+.+.++|++.+    .+++++||+||++||++|+.+.|.+.++++.++++.|+.+|++++++++++|+|.++||+++
T Consensus        21 v~~l~~~~~f~~~~----~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~i   96 (125)
T 1r26_A           21 VVDVYSVEQFRNIM----SEDILTVAWFTAVWCGPCKTIERPMEKIAYEFPTVKFAKVDADNNSEIVSKCRVLQLPTFII   96 (125)
T ss_dssp             CEEECCHHHHHHHH----HSSSCEEEEEECTTCHHHHHTHHHHHHHHHHCTTSEEEEEETTTCHHHHHHTTCCSSSEEEE
T ss_pred             eEECCCHHHHHHHH----ccCCEEEEEEECCcCHhHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHcCCCcccEEEE
Confidence            77887778888877    46899999999999999999999999999999899999999999999999999999999999


Q ss_pred             EeCCeEEEEEeCCChHHHHHHHHHHhhc
Q 032502          106 LKDGQQVDKLVGANKPELQKKVAAAVDS  133 (139)
Q Consensus       106 ~~~g~~~~~~~g~~~~~l~~~i~~~~~~  133 (139)
                      +++|+++.++.|.+.++|.++|.+++.+
T Consensus        97 ~~~G~~~~~~~G~~~~~l~~~l~~~l~~  124 (125)
T 1r26_A           97 ARSGKMLGHVIGANPGMLRQKLRDIIKD  124 (125)
T ss_dssp             EETTEEEEEEESSCHHHHHHHHHHHHHC
T ss_pred             EeCCeEEEEEeCCCHHHHHHHHHHHhcC
Confidence            9999999999999889999999998764

>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ...

Probab=99.93  E-value=9.8e-25  Score=130.59  Aligned_cols=104  Identities=43%  Similarity=0.850  Sum_probs=95.4

Q ss_pred             eEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhhhhhCCCcceeEEEE
Q 032502           26 VSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFF  105 (139)
Q Consensus        26 ~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~  105 (139)
                      +..+.+.++++..+...  ++++++|+||++||++|+.+.|.++++++.++++.|+.+|++++++++++|++.++||+++
T Consensus         2 v~~i~~~~~~~~~l~~~--~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~   79 (105)
T 3m9j_A            2 VKQIESKTAFQEALDAA--GDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASESEVKSMPTFQF   79 (105)
T ss_dssp             CEECCSHHHHHHHHHHT--TTSCEEEEEECTTCHHHHHHHHHHHHHHHHSTTSEEEEEETTTCHHHHHHTTCCBSSEEEE
T ss_pred             eEEcCCHHHHHHHHHhc--CCCeEEEEEECCCChhhHHHHHHHHHHHHHccCeEEEEEEhhhhHHHHHHcCCCcCcEEEE
Confidence            46778888888877532  5899999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCeEEEEEeCCChHHHHHHHHHHh
Q 032502          106 LKDGQQVDKLVGANKPELQKKVAAAV  131 (139)
Q Consensus       106 ~~~g~~~~~~~g~~~~~l~~~i~~~~  131 (139)
                      +++|+.+.++.|.+.++|.++|++++
T Consensus        80 ~~~g~~~~~~~g~~~~~l~~~l~~~l  105 (105)
T 3m9j_A           80 FKKGQKVGEFSGANKEKLEATINELV  105 (105)
T ss_dssp             EETTEEEEEEESSCHHHHHHHHHHHC
T ss_pred             EECCeEEEEEeCCCHHHHHHHHHHhC
Confidence            99999999999999999999998764

>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*

Probab=99.93  E-value=1.3e-24  Score=133.54  Aligned_cols=109  Identities=41%  Similarity=0.840  Sum_probs=98.8

Q ss_pred             CceEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhhhhhCCCcceeEE
Q 032502           24 GNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTF  103 (139)
Q Consensus        24 ~~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~  103 (139)
                      .++..+.+.++|+..+..+..++++++|+||++||++|+.+.|.+++++++++++.|+.+|++++++++++|+|.++||+
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~   91 (122)
T 2vlu_A           12 AEVISVHSLEQWTMQIEEANTAKKLVVIDFTASWCGPCRIMAPVFADLAKKFPNAVFLKVDVDELKPIAEQFSVEAMPTF   91 (122)
T ss_dssp             CCCEEECSHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTCHHHHHHTTCCSSSEE
T ss_pred             CcceeccCHHHHHHHHHHhhccCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCcEEEEEECCCCHHHHHHcCCCcccEE
Confidence            45566778899998887655578999999999999999999999999999998999999999999999999999999999


Q ss_pred             EEEeCCeEEEEEeCCChHHHHHHHHHHhh
Q 032502          104 FFLKDGQQVDKLVGANKPELQKKVAAAVD  132 (139)
Q Consensus       104 ~~~~~g~~~~~~~g~~~~~l~~~i~~~~~  132 (139)
                      +++++|+++.++.|...++|.++|++++.
T Consensus        92 ~~~~~G~~~~~~~G~~~~~l~~~l~~~l~  120 (122)
T 2vlu_A           92 LFMKEGDVKDRVVGAIKEELTAKVGLHAA  120 (122)
T ss_dssp             EEEETTEEEEEEESSCHHHHHHHHHHHHS
T ss_pred             EEEeCCEEEEEEeCcCHHHHHHHHHHHhc
Confidence            99999999999988878889999988865

>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus}

Probab=99.93  E-value=3.5e-26  Score=137.37  Aligned_cols=100  Identities=13%  Similarity=0.255  Sum_probs=78.2

Q ss_pred             EeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhhhhhCCCcceeEEEEEe
Q 032502           28 LVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLK  107 (139)
Q Consensus        28 ~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~  107 (139)
                      .+.+.+++++.+    .++++++|+||++||++|+.+.|.++++++.++++.|+.+|++++++++++|+|.++||+++++
T Consensus         4 ~i~~~~~~~~~~----~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~   79 (105)
T 4euy_A            4 TFKTIEELATYI----EEQQLVLLFIKTENCGVCDVMLRKVNYVLENYNYVEKIEILLQDMQEIAGRYAVFTGPTVLLFY   79 (105)
T ss_dssp             ------CCSSST----TCSSEEEEEEEESSCHHHHHHHHHHHHHHHTCTTEEEEEEEECCC---------CCCCEEEEEE
T ss_pred             ccCCHHHHHHHH----hcCCCEEEEEeCCCCcchHHHHHHHHHHHHHcCCceEEEEECCCCHHHHHhcCCCCCCEEEEEe
Confidence            445555665555    4689999999999999999999999999999989999999999999999999999999999999


Q ss_pred             CCeEEEEEeCC-ChHHHHHHHHHHh
Q 032502          108 DGQQVDKLVGA-NKPELQKKVAAAV  131 (139)
Q Consensus       108 ~g~~~~~~~g~-~~~~l~~~i~~~~  131 (139)
                      +|+++.++.|. +.++|.++|++++
T Consensus        80 ~G~~~~~~~g~~~~~~l~~~l~~~~  104 (105)
T 4euy_A           80 NGKEILRESRFISLENLERTIQLFE  104 (105)
T ss_dssp             TTEEEEEEESSCCHHHHHHHHHTTC
T ss_pred             CCeEEEEEeCCcCHHHHHHHHHHhh
Confidence            99999999999 9999999998765

>2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Shigella flexneri 2A} PDB: 2hfd_A

Probab=99.93  E-value=1.1e-25  Score=140.63  Aligned_cols=102  Identities=13%  Similarity=0.137  Sum_probs=91.3

Q ss_pred             echhHHHHHHHHHhhCCCEEEEEEeCCC--ChhhhhhhHhHHHHHHhCC-C-cEEEEEeCCcchhhhhhCCCcceeEEEE
Q 032502           30 TTKDIWDQKMSEASKEGKIVIANFSATW--CGPCRMIAPFFSELSEKYP-S-LMFLLVDVDELVEFSTSWDIKATPTFFF  105 (139)
Q Consensus        30 ~~~~~~~~~~~~~~~~~k~vlv~f~~~~--C~~C~~~~~~l~~~~~~~~-~-v~~~~vd~~~~~~~~~~~~v~~~Pt~~~  105 (139)
                      .+.++|+..+.    +++++||+||++|  |+.|+.+.|.|++++++|+ . ++|+.+|.|++++++.+|+|+++||+++
T Consensus        22 ~t~~~F~~~v~----~~~~vlVdF~a~~crCgpCk~iaPvleela~e~~g~~v~~~KVdvDe~~~lA~~ygV~sIPTlil   97 (140)
T 2qgv_A           22 VSESRLDDWLT----QAPDGVVLLSSDPKRTPEVSDNPVMIGELLHEFPDYTWQVAIADLEQSEAIGDRFGAFRFPATLV   97 (140)
T ss_dssp             CCHHHHHHHHH----TCSSEEEEECCCTTTCTTTTHHHHHHHHHHTTCTTSCCEEEECCHHHHHHHHHHHTCCSSSEEEE
T ss_pred             CCHHHHHHHHh----CCCCEEEEEeCCcccCCcHHHHHhHHHHHHHHcCCCeEEEEEEECCCCHHHHHHcCCccCCEEEE
Confidence            36688887772    5678999999999  9999999999999999997 4 8999999999999999999999999999


Q ss_pred             EeCCeEEEEEeCC-ChHHHHHHHHHHhhccC
Q 032502          106 LKDGQQVDKLVGA-NKPELQKKVAAAVDSVV  135 (139)
Q Consensus       106 ~~~g~~~~~~~g~-~~~~l~~~i~~~~~~~~  135 (139)
                      |++|+++.+..|. +.++|.++|+++++...
T Consensus        98 Fk~G~~v~~~~G~~~k~~l~~~i~~~l~~~~  128 (140)
T 2qgv_A           98 FTGGNYRGVLNGIHPWAELINLMRGLVEPQQ  128 (140)
T ss_dssp             EETTEEEEEEESCCCHHHHHHHHHHHHC---
T ss_pred             EECCEEEEEEecCCCHHHHHHHHHHHhcCCC
Confidence            9999999999999 88999999999886543

>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae}

Probab=99.93  E-value=8.7e-25  Score=132.46  Aligned_cols=107  Identities=23%  Similarity=0.496  Sum_probs=92.9

Q ss_pred             eEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHh--CCCcEEEEEeCCcchhhhhhCCCcceeEE
Q 032502           26 VSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEK--YPSLMFLLVDVDELVEFSTSWDIKATPTF  103 (139)
Q Consensus        26 ~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~--~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~  103 (139)
                      +..+.+.++|++.+.. ..++++++|+||++||++|+.+.|.+++++++  ++++.|+.+|++++++++++|+|.++||+
T Consensus         2 v~~i~~~~~~~~~~~~-~~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~   80 (112)
T 3d6i_A            2 VIEINDQEQFTYLTTT-AAGDKLIVLYFHTSWAEPCKALKQVFEAISNEPSNSNVSFLSIDADENSEISELFEISAVPYF   80 (112)
T ss_dssp             EEEECCHHHHHHHHTT-TTTTCCEEEEEECCC--CHHHHHHHHHHHHHCGGGTTSEEEEEETTTCHHHHHHTTCCSSSEE
T ss_pred             ccccCCHHHHHHHHhc-ccCCCEEEEEEECCCCHHHHHHHHHHHHHHHhcCCCCEEEEEEecccCHHHHHHcCCCcccEE
Confidence            4567777888887753 24589999999999999999999999999998  56799999999999999999999999999


Q ss_pred             EEEeCCeEEEEEeCCChHHHHHHHHHHhhc
Q 032502          104 FFLKDGQQVDKLVGANKPELQKKVAAAVDS  133 (139)
Q Consensus       104 ~~~~~g~~~~~~~g~~~~~l~~~i~~~~~~  133 (139)
                      +++++|+++.++.|...++|.++|++++..
T Consensus        81 ~~~~~G~~~~~~~G~~~~~l~~~l~~~~~~  110 (112)
T 3d6i_A           81 IIIHKGTILKELSGADPKEYVSLLEDCKNS  110 (112)
T ss_dssp             EEEETTEEEEEECSCCHHHHHHHHHHHHHH
T ss_pred             EEEECCEEEEEecCCCHHHHHHHHHHHHhh
Confidence            999999999999999767799999988764

>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A

Probab=99.93  E-value=1.9e-24  Score=138.09  Aligned_cols=113  Identities=27%  Similarity=0.521  Sum_probs=100.1

Q ss_pred             CCCceEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhhhhhCCCccee
Q 032502           22 AGGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATP  101 (139)
Q Consensus        22 ~~~~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P  101 (139)
                      ..+.+..+.+.++++..+...  .++++||+||++||++|+.+.|.+.++++.++++.|+.+|+++++.++++|+|.++|
T Consensus        10 ~~~~v~~l~~~~~~~~~~~~~--~~~~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~~~~~~l~~~~~v~~~P   87 (153)
T 2wz9_A           10 AVAAVEEVGSAGQFEELLRLK--AKSLLVVHFWAPWAPQCAQMNEVMAELAKELPQVSFVKLEAEGVPEVSEKYEISSVP   87 (153)
T ss_dssp             --CCSEEECSHHHHHHHHHHT--TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTSHHHHHHTTCCSSS
T ss_pred             ccCCeEEcCCHHHHHHHHHhc--CCCeEEEEEECCCCHhHHHHHHHHHHHHHHcCCeEEEEEECCCCHHHHHHcCCCCCC
Confidence            345678888888898777422  389999999999999999999999999999989999999999999999999999999


Q ss_pred             EEEEEeCCeEEEEEeCCChHHHHHHHHHHhhccCC
Q 032502          102 TFFFLKDGQQVDKLVGANKPELQKKVAAAVDSVVP  136 (139)
Q Consensus       102 t~~~~~~g~~~~~~~g~~~~~l~~~i~~~~~~~~~  136 (139)
                      |+++|++|+++.++.|.+.++|.++|.+++.....
T Consensus        88 t~~~~~~G~~~~~~~G~~~~~l~~~i~~~l~~~~~  122 (153)
T 2wz9_A           88 TFLFFKNSQKIDRLDGAHAPELTKKVQRHASSGSF  122 (153)
T ss_dssp             EEEEEETTEEEEEEESSCHHHHHHHHHHHSCTTSS
T ss_pred             EEEEEECCEEEEEEeCCCHHHHHHHHHHHhccccC
Confidence            99999999999999999888999999999876543

>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0

Probab=99.92  E-value=5.1e-24  Score=128.65  Aligned_cols=104  Identities=25%  Similarity=0.533  Sum_probs=93.7

Q ss_pred             ceEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCC-cEEEEEeCCcchhhhhhCCCcceeEE
Q 032502           25 NVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVDELVEFSTSWDIKATPTF  103 (139)
Q Consensus        25 ~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~-v~~~~vd~~~~~~~~~~~~v~~~Pt~  103 (139)
                      ++..+ +.++|...+.   .++++++|+||++||++|+.+.|.++++++.+++ +.|+.+|+++++.++++|+|.++||+
T Consensus         5 ~v~~l-~~~~~~~~~~---~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~   80 (111)
T 3gnj_A            5 SLEKL-DTNTFEQLIY---DEGKACLVMFSRKNCHVCQKVTPVLEELRLNYEESFGFYYVDVEEEKTLFQRFSLKGVPQI   80 (111)
T ss_dssp             CSEEC-CHHHHHHHHT---TSCCCEEEEEECSSCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTCHHHHHHTTCCSSCEE
T ss_pred             cceec-CHHHHHHHHH---hcCCEEEEEEeCCCChhHHHHHHHHHHHHHHcCCceEEEEEECCcChhHHHhcCCCcCCEE
Confidence            44555 6777776663   4579999999999999999999999999999985 99999999999999999999999999


Q ss_pred             EEEeCCeEEEEEeCC-ChHHHHHHHHHHhh
Q 032502          104 FFLKDGQQVDKLVGA-NKPELQKKVAAAVD  132 (139)
Q Consensus       104 ~~~~~g~~~~~~~g~-~~~~l~~~i~~~~~  132 (139)
                      +++++|+.+.++.|. +.++|.++|.++++
T Consensus        81 ~~~~~g~~~~~~~g~~~~~~l~~~l~~~l~  110 (111)
T 3gnj_A           81 LYFKDGEYKGKMAGDVEDDEVEQMIADVLE  110 (111)
T ss_dssp             EEEETTEEEEEEESSCCHHHHHHHHHHHHH
T ss_pred             EEEECCEEEEEEeccCCHHHHHHHHHHHhc
Confidence            999999999999999 99999999999875

>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1

Probab=99.92  E-value=2.9e-24  Score=130.34  Aligned_cols=104  Identities=38%  Similarity=0.744  Sum_probs=93.8

Q ss_pred             CceEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhhhhhCCCcceeEE
Q 032502           24 GNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTF  103 (139)
Q Consensus        24 ~~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~  103 (139)
                      .+.....+.++|++.+    .++++++|+||++||++|+.+.|.+++++++++++.|+.+|+++++.++++|+|.++||+
T Consensus         8 ~~~~~~~~~~~f~~~~----~~~k~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~   83 (112)
T 1syr_A            8 HMVKIVTSQAEFDSII----SQNELVIVDFFAEWCGPCKRIAPFYEECSKTYTKMVFIKVDVDEVSEVTEKENITSMPTF   83 (112)
T ss_dssp             -CCEEECSHHHHHHHH----HHCSEEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTTHHHHHHTTCCSSSEE
T ss_pred             eeEEEECCHHHHHHHH----ccCCeEEEEEECCCCHHHHHHHHHHHHHHHHcCCCEEEEEECCCCHHHHHHcCCCcccEE
Confidence            3446667888888877    368999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCeEEEEEeCCChHHHHHHHHHHh
Q 032502          104 FFLKDGQQVDKLVGANKPELQKKVAAAV  131 (139)
Q Consensus       104 ~~~~~g~~~~~~~g~~~~~l~~~i~~~~  131 (139)
                      +++++|+++.++.|.+.++|.++|++++
T Consensus        84 ~~~~~G~~~~~~~G~~~~~l~~~l~~~l  111 (112)
T 1syr_A           84 KVYKNGSSVDTLLGANDSALKQLIEKYA  111 (112)
T ss_dssp             EEEETTEEEEEEESCCHHHHHHHHHTTC
T ss_pred             EEEECCcEEEEEeCCCHHHHHHHHHHhh
Confidence            9999999999999988889999888765

>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A

Probab=99.92  E-value=4.7e-24  Score=130.77  Aligned_cols=111  Identities=23%  Similarity=0.551  Sum_probs=96.8

Q ss_pred             cccCCCceEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCC-CcEEEEEeCCcchhhhhhCCC
Q 032502           19 VEFAGGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP-SLMFLLVDVDELVEFSTSWDI   97 (139)
Q Consensus        19 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~-~v~~~~vd~~~~~~~~~~~~v   97 (139)
                      ....+++.....+.++|.+.+.   .+++++||+||++||++|+.+.+.+.++++++. ++.|+.+|++.+..++++|+|
T Consensus         7 ~~~~~~~~~~~~~~~~f~~~v~---~~~k~vlv~f~a~~C~~C~~~~~~l~~~~~~~~~~v~~~~vd~d~~~~l~~~~~v   83 (119)
T 1w4v_A            7 HHHHGSTTFNIQDGPDFQDRVV---NSETPVVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDDHTDLAIEYEV   83 (119)
T ss_dssp             ---CCCSEEECCSHHHHHHHTT---TCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTSSEEEEEETTTTHHHHHHTTC
T ss_pred             cccCCceEEEecChhhHHHHHH---cCCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCCHHHHHHcCC
Confidence            3445566677778888887664   458899999999999999999999999999986 599999999999999999999


Q ss_pred             cceeEEEEEeCCeEEEEEeCC-ChHHHHHHHHHHhh
Q 032502           98 KATPTFFFLKDGQQVDKLVGA-NKPELQKKVAAAVD  132 (139)
Q Consensus        98 ~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~i~~~~~  132 (139)
                      .++||++++++|+++.++.|. +.+.|.++|+++++
T Consensus        84 ~~~Pt~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l~  119 (119)
T 1w4v_A           84 SAVPTVLAMKNGDVVDKFVGIKDEDQLEAFLKKLIG  119 (119)
T ss_dssp             CSSSEEEEEETTEEEEEEESCCCHHHHHHHHHHHHC
T ss_pred             CcccEEEEEeCCcEEEEEcCCCCHHHHHHHHHHHhC
Confidence            999999999999999999999 99999999998763

>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica}

Probab=99.92  E-value=5.7e-24  Score=126.94  Aligned_cols=103  Identities=35%  Similarity=0.736  Sum_probs=92.8

Q ss_pred             EEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhhhhhCCCcceeEEEEE
Q 032502           27 SLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFL  106 (139)
Q Consensus        27 ~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~  106 (139)
                      ..+.+.+++++.+..  .++++++|+||++||++|+.+.+.+.++++.++++.|+.+|++++++++++|++.++||++++
T Consensus         2 ~~i~~~~~~~~~l~~--~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~   79 (104)
T 2vim_A            2 RVLATAADLEKLINE--NKGRLIVVDFFAQWCGPCRNIAPKVEALAKEIPEVEFAKVDVDQNEEAAAKYSVTAMPTFVFI   79 (104)
T ss_dssp             EECCSHHHHHHHHHT--TTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTCHHHHHHTTCCSSSEEEEE
T ss_pred             eecCCHHHHHHHHHh--cCCCeEEEEEECCCCHHHHHhhHHHHHHHHHCCCCEEEEEeccCCHHHHHHcCCccccEEEEE
Confidence            456677888877742  268999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCeEEEEEeCCChHHHHHHHHHHh
Q 032502          107 KDGQQVDKLVGANKPELQKKVAAAV  131 (139)
Q Consensus       107 ~~g~~~~~~~g~~~~~l~~~i~~~~  131 (139)
                      ++|+++.++.|.+.++|.++|++++
T Consensus        80 ~~g~~~~~~~G~~~~~l~~~l~~~l  104 (104)
T 2vim_A           80 KDGKEVDRFSGANETKLRETITRHK  104 (104)
T ss_dssp             ETTEEEEEEESSCHHHHHHHHHHHC
T ss_pred             eCCcEEEEEeCCCHHHHHHHHHhhC
Confidence            9999999999988888999988764

>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A

Probab=99.92  E-value=2.7e-24  Score=131.08  Aligned_cols=102  Identities=33%  Similarity=0.704  Sum_probs=90.4

Q ss_pred             CceEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhhhhhCCCcceeEE
Q 032502           24 GNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTF  103 (139)
Q Consensus        24 ~~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~  103 (139)
                      +.+..+.+.+.++..+    .++++++|+||++||++|+.+.|.+++++++++++.|+.+|++++++++++|+|.++||+
T Consensus        12 ~~~~~~~~~~~~~~~~----~~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~   87 (114)
T 2oe3_A           12 TSITKLTNLTEFRNLI----KQNDKLVIDFYATWCGPCKMMQPHLTKLIQAYPDVRFVKCDVDESPDIAKECEVTAMPTF   87 (114)
T ss_dssp             GGSCBCCSHHHHHHHH----HHCSEEEEEEECTTCHHHHHTHHHHHHHHHHCTTSEEEEEETTTCHHHHHHTTCCSBSEE
T ss_pred             hheeecCCHHHHHHHH----hCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHCCCCcccEE
Confidence            4556677778777766    457999999999999999999999999999998899999999999999999999999999


Q ss_pred             EEEeCCeEEEEEeCCChHHHHHHHHH
Q 032502          104 FFLKDGQQVDKLVGANKPELQKKVAA  129 (139)
Q Consensus       104 ~~~~~g~~~~~~~g~~~~~l~~~i~~  129 (139)
                      +++++|+++.++.|...++|.++|++
T Consensus        88 ~~~~~G~~~~~~~G~~~~~l~~~l~~  113 (114)
T 2oe3_A           88 VLGKDGQLIGKIIGANPTALEKGIKD  113 (114)
T ss_dssp             EEEETTEEEEEEESSCHHHHHHHHHT
T ss_pred             EEEeCCeEEEEEeCCCHHHHHHHHHh
Confidence            99999999999999877777777653

>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A

Probab=99.92  E-value=1.4e-23  Score=125.58  Aligned_cols=104  Identities=39%  Similarity=0.763  Sum_probs=93.1

Q ss_pred             eEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhC-CCcEEEEEeCCcchhhhhhCCCcceeEEE
Q 032502           26 VSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKY-PSLMFLLVDVDELVEFSTSWDIKATPTFF  104 (139)
Q Consensus        26 ~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~-~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~  104 (139)
                      +..+.+.++++..+..  .++++++|+||++||++|+.+.|.++++++.+ +++.++.+|+++++.++++|++.++||++
T Consensus         2 v~~l~~~~~~~~~l~~--~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~   79 (106)
T 1xwb_A            2 VYQVKDKADLDGQLTK--ASGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDECEDIAMEYNISSMPTFV   79 (106)
T ss_dssp             EEECCSHHHHHHHHHH--HTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCHHHHHHTTCCSSSEEE
T ss_pred             ceecCCHHHHHHHHHh--cCCCEEEEEEECCcCHHHHHhhHHHHHHHHHhCCCeEEEEEeccchHHHHHHcCCCcccEEE
Confidence            5667777888887753  36899999999999999999999999999999 57999999999999999999999999999


Q ss_pred             EEeCCeEEEEEeCCChHHHHHHHHHHh
Q 032502          105 FLKDGQQVDKLVGANKPELQKKVAAAV  131 (139)
Q Consensus       105 ~~~~g~~~~~~~g~~~~~l~~~i~~~~  131 (139)
                      ++++|+++.++.|.+.++|.++|++++
T Consensus        80 ~~~~G~~~~~~~g~~~~~l~~~i~~~l  106 (106)
T 1xwb_A           80 FLKNGVKVEEFAGANAKRLEDVIKANI  106 (106)
T ss_dssp             EEETTEEEEEEESCCHHHHHHHHHHTC
T ss_pred             EEcCCcEEEEEcCCCHHHHHHHHHHhC
Confidence            999999999999988888998887753

>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A

Probab=99.92  E-value=6.2e-24  Score=128.55  Aligned_cols=106  Identities=30%  Similarity=0.544  Sum_probs=92.3

Q ss_pred             CCceEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCC-cchhhhhhCCCccee
Q 032502           23 GGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVD-ELVEFSTSWDIKATP  101 (139)
Q Consensus        23 ~~~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~-~~~~~~~~~~v~~~P  101 (139)
                      .+.+..++ .++|...+..  .++++++|+||++||++|+.+.|.+.++++.++++.|+.+|++ .+..++++|++.++|
T Consensus         4 ~~~v~~l~-~~~~~~~~~~--~~~~~vlv~f~a~wC~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~~v~~~P   80 (111)
T 2pu9_C            4 VGKVTEVN-KDTFWPIVKA--AGDKPVVLDMFTQWCGPSKAMAPKYEKLAEEYLDVIFLKLDCNQENKTLAKELGIRVVP   80 (111)
T ss_dssp             TTSEEEEC-TTTHHHHHTT--CTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEECSSTTHHHHHHHCCSBSS
T ss_pred             cCccEEec-hHHHHHHHHh--cCCCEEEEEEECCcCHhHHHHCHHHHHHHHHCCCeEEEEEecCcchHHHHHHcCCCeee
Confidence            34556654 4677776642  2588999999999999999999999999999999999999998 789999999999999


Q ss_pred             EEEEEeCCeEEEEEeCCChHHHHHHHHHHh
Q 032502          102 TFFFLKDGQQVDKLVGANKPELQKKVAAAV  131 (139)
Q Consensus       102 t~~~~~~g~~~~~~~g~~~~~l~~~i~~~~  131 (139)
                      |++++++|+++.++.|...++|.++|++++
T Consensus        81 t~~~~~~G~~~~~~~G~~~~~l~~~l~~~~  110 (111)
T 2pu9_C           81 TFKILKENSVVGEVTGAKYDKLLEAIQAAR  110 (111)
T ss_dssp             EEEEESSSSEEEEEESSCHHHHHHHHHHHH
T ss_pred             EEEEEeCCcEEEEEcCCCHHHHHHHHHHhh
Confidence            999999999999999998888999988775

>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A

Probab=99.92  E-value=1e-23  Score=128.71  Aligned_cols=104  Identities=37%  Similarity=0.735  Sum_probs=94.3

Q ss_pred             ceEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhhhhhCCCcceeEEE
Q 032502           25 NVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFF  104 (139)
Q Consensus        25 ~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~  104 (139)
                      .+..+.+.+++...+..  .++++++|+||++||++|+.+.|.++++++++ ++.++.+|++++++++++|+|.++||++
T Consensus        14 ~v~~l~~~~~~~~~l~~--~~~~~~vv~f~a~wC~~C~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~v~~~Pt~~   90 (117)
T 2xc2_A           14 ELIELKQDGDLESLLEQ--HKNKLVVVDFFATWCGPCKTIAPLFKELSEKY-DAIFVKVDVDKLEETARKYNISAMPTFI   90 (117)
T ss_dssp             EEEECCSTTHHHHHHHH--TTTSCEEEEEECTTCHHHHHHHHHHHHHHTTS-SSEEEEEETTTSHHHHHHTTCCSSSEEE
T ss_pred             eeEEeCCHHHHHHHHHh--CCCCEEEEEEECCCCHhHHHHhHHHHHHHHHc-CcEEEEEECCccHHHHHHcCCCccceEE
Confidence            47788887888887753  36899999999999999999999999999999 8999999999999999999999999999


Q ss_pred             EEeCCeEEEEEeCCChHHHHHHHHHHh
Q 032502          105 FLKDGQQVDKLVGANKPELQKKVAAAV  131 (139)
Q Consensus       105 ~~~~g~~~~~~~g~~~~~l~~~i~~~~  131 (139)
                      ++++|+++.++.|.+.++|.++|++++
T Consensus        91 ~~~~G~~~~~~~G~~~~~l~~~l~~~l  117 (117)
T 2xc2_A           91 AIKNGEKVGDVVGASIAKVEDMIKKFI  117 (117)
T ss_dssp             EEETTEEEEEEESSCHHHHHHHHHHHC
T ss_pred             EEeCCcEEEEEeCCCHHHHHHHHHHhC
Confidence            999999999999998888999888764

>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A

Probab=99.92  E-value=7e-24  Score=126.96  Aligned_cols=102  Identities=36%  Similarity=0.608  Sum_probs=91.0

Q ss_pred             CceEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCC-cEEEEEeCCcchhhhhhCCCcceeE
Q 032502           24 GNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVDELVEFSTSWDIKATPT  102 (139)
Q Consensus        24 ~~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~-v~~~~vd~~~~~~~~~~~~v~~~Pt  102 (139)
                      ..+..+ +.++++..+     ++++++|+||++||++|+.+.|.++++++.+++ +.++.+|+++++.++++|++.++||
T Consensus         3 ~~v~~l-~~~~~~~~~-----~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt   76 (106)
T 3die_A            3 MAIVKV-TDADFDSKV-----ESGVQLVDFWATACGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPT   76 (106)
T ss_dssp             CCCEEC-CTTTHHHHS-----CSSEEEEEEECSBCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCSBSE
T ss_pred             cceEEC-CHHHHHHHh-----cCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCcEEEEEECCcCHHHHHhCCCcccCE
Confidence            345555 566676666     589999999999999999999999999999986 9999999999999999999999999


Q ss_pred             EEEEeCCeEEEEEeCC-ChHHHHHHHHHHh
Q 032502          103 FFFLKDGQQVDKLVGA-NKPELQKKVAAAV  131 (139)
Q Consensus       103 ~~~~~~g~~~~~~~g~-~~~~l~~~i~~~~  131 (139)
                      ++++++|+++.++.|. +.++|.++|++++
T Consensus        77 ~~~~~~G~~~~~~~g~~~~~~l~~~l~~~l  106 (106)
T 3die_A           77 LIVFKDGQPVDKVVGFQPKENLAEVLDKHL  106 (106)
T ss_dssp             EEEEETTEEEEEEESCCCHHHHHHHHHTTC
T ss_pred             EEEEeCCeEEEEEeCCCCHHHHHHHHHHhC
Confidence            9999999999999999 8899999988653

>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=99.92  E-value=8.4e-24  Score=127.13  Aligned_cols=98  Identities=30%  Similarity=0.634  Sum_probs=90.4

Q ss_pred             echhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCC-CcEEEEEeCCcchhhhhhCCCcceeEEEEEeC
Q 032502           30 TTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP-SLMFLLVDVDELVEFSTSWDIKATPTFFFLKD  108 (139)
Q Consensus        30 ~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~-~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~  108 (139)
                      .+.++++..+    .++++++|+||++||++|+.+.|.+.++++.++ ++.|+.+|++.++.++++|++.++||++++++
T Consensus         9 l~~~~~~~~~----~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~   84 (109)
T 3tco_A            9 LTEENFDEVI----RNNKLVLVDCWAEWCAPCHLYEPIYKKVAEKYKGKAVFGRLNVDENQKIADKYSVLNIPTTLIFVN   84 (109)
T ss_dssp             CCTTTHHHHH----HHSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTCHHHHHHTTCCSSSEEEEEET
T ss_pred             ecHHHHHHHH----hcCCeEEEEEECCCCHHHHhhhHHHHHHHHHhCCCceEEEEccccCHHHHHhcCcccCCEEEEEcC
Confidence            4667777666    348999999999999999999999999999998 59999999999999999999999999999999


Q ss_pred             CeEEEEEeCC-ChHHHHHHHHHHh
Q 032502          109 GQQVDKLVGA-NKPELQKKVAAAV  131 (139)
Q Consensus       109 g~~~~~~~g~-~~~~l~~~i~~~~  131 (139)
                      |+++.++.|. +.++|.++|++++
T Consensus        85 g~~~~~~~g~~~~~~l~~~l~~~l  108 (109)
T 3tco_A           85 GQLVDSLVGAVDEDTLESTVNKYL  108 (109)
T ss_dssp             TEEEEEEESCCCHHHHHHHHHHHC
T ss_pred             CcEEEeeeccCCHHHHHHHHHHHh
Confidence            9999999999 9999999999876

>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} SCOP: c.47.1.0 PDB: 1xbs_A

Probab=99.92  E-value=3.6e-24  Score=136.34  Aligned_cols=108  Identities=22%  Similarity=0.352  Sum_probs=96.6

Q ss_pred             ceEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCC-cEEEEEeCCcchhhhhhCCCcceeEE
Q 032502           25 NVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVDELVEFSTSWDIKATPTF  103 (139)
Q Consensus        25 ~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~-v~~~~vd~~~~~~~~~~~~v~~~Pt~  103 (139)
                      .++.+.+.++++..+..  .+++++||+||++||++|+.+.|.+.++++++++ +.|+.+|++++++++++|+|.++||+
T Consensus         4 ~l~~i~~~~~~~~~i~~--~~~k~vlv~F~a~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~   81 (149)
T 3gix_A            4 LLPKLTSKKEVDQAIKS--TAEKVLVLRFGRDEDPVCLQLDDILSKTSSDLSKMAAIYLVDVDQTAVYTQYFDISYIPST   81 (149)
T ss_dssp             SCCEECSHHHHHHHHHH--CCSSEEEEEEECTTSHHHHHHHHHHHHHHTTTTTTEEEEEEETTTCCHHHHHTTCCSSSEE
T ss_pred             ceeecCCHHHHHHHHHh--cCCCEEEEEEECCCCHHHHHHHHHHHHHHHHccCceEEEEEECCcCHHHHHHcCCCccCeE
Confidence            35667788888877741  3589999999999999999999999999999987 99999999999999999999999999


Q ss_pred             EEEeCCeEE---------EEEeC-C-ChHHHHHHHHHHhhcc
Q 032502          104 FFLKDGQQV---------DKLVG-A-NKPELQKKVAAAVDSV  134 (139)
Q Consensus       104 ~~~~~g~~~---------~~~~g-~-~~~~l~~~i~~~~~~~  134 (139)
                      +++++|+++         .++.| . +.++|.++|++++...
T Consensus        82 ~~~~~G~~v~~~~g~~~~~~~~G~~~~~~~l~~~l~~~~~~~  123 (149)
T 3gix_A           82 VFFFNGQHMKVDYGSPDHTKFVGSFKTKQDFIDLIEVIYRGA  123 (149)
T ss_dssp             EEEETTEEEEEECSSSCCSCEESCCSSHHHHHHHHHHHHHHH
T ss_pred             EEEECCeEEEeecCCCCCCeEeeecCCHHHHHHHHHHHHHHh
Confidence            999999999         88889 6 8999999999987654

>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis}

Probab=99.91  E-value=6.3e-24  Score=130.61  Aligned_cols=107  Identities=37%  Similarity=0.731  Sum_probs=97.9

Q ss_pred             cCCCceEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCC--cEEEEEeCCcchhhhhhCCCc
Q 032502           21 FAGGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS--LMFLLVDVDELVEFSTSWDIK   98 (139)
Q Consensus        21 ~~~~~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~--v~~~~vd~~~~~~~~~~~~v~   98 (139)
                      ..+..+..+.+.++|++.+    .++++++|+||++||++|+.+.+.++++++.+++  +.|+.+|++++++++++|++.
T Consensus        12 ~~~~~~~~i~~~~~f~~~l----~~~k~vvv~f~a~~C~~C~~~~~~l~~l~~~~~~~~v~~~~vd~d~~~~~~~~~~v~   87 (121)
T 2j23_A           12 VPRGSVQVISSYDQFKQVT----GGDKVVVIDFWATWCGPCKMIGPVFEKISDTPAGDKVGFYKVDVDEQSQIAQEVGIR   87 (121)
T ss_dssp             CCCCCEEECCSHHHHHHHH----SSSSCEEEEEECTTCSTHHHHHHHHHHHHTSTHHHHSEEEEEETTTCHHHHHHHTCC
T ss_pred             cCCcceEEcCCHHHHHHHH----cCCCEEEEEEECCCCHhHHHHHHHHHHHHHHCcCCcEEEEEEECcCCHHHHHHcCCC
Confidence            3456788899999998877    5689999999999999999999999999999875  999999999999999999999


Q ss_pred             ceeEEEEEeCCeEEEEEeCCChHHHHHHHHHHh
Q 032502           99 ATPTFFFLKDGQQVDKLVGANKPELQKKVAAAV  131 (139)
Q Consensus        99 ~~Pt~~~~~~g~~~~~~~g~~~~~l~~~i~~~~  131 (139)
                      ++||++++++|+++.++.|.+.++|.++|++++
T Consensus        88 ~~Pt~~~~~~G~~~~~~~G~~~~~l~~~l~~~l  120 (121)
T 2j23_A           88 AMPTFVFFKNGQKIDTVVGADPSKLQAAITQHS  120 (121)
T ss_dssp             SSSEEEEEETTEEEEEEESSCHHHHHHHHHHHT
T ss_pred             cccEEEEEECCeEEeeEcCCCHHHHHHHHHHhh
Confidence            999999999999999999988899999998875

>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A

Probab=99.91  E-value=2.3e-23  Score=124.00  Aligned_cols=98  Identities=30%  Similarity=0.679  Sum_probs=90.0

Q ss_pred             chhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhhhhhCCCcceeEEEEEeCCe
Q 032502           31 TKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQ  110 (139)
Q Consensus        31 ~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~  110 (139)
                      +.+++++.+    .++++++|+||++||++|+.+.+.++++++.++++.++.+|++.+++++++|++.++||++++++|+
T Consensus         5 ~~~~~~~~~----~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~   80 (104)
T 2e0q_A            5 DSKNFDSFL----ASHEIAVVDFWAEWCAPCLILAPIIEELAEDYPQVGFGKLNSDENPDIAARYGVMSLPTVIFFKDGE   80 (104)
T ss_dssp             CTTTHHHHH----HHSSEEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTCHHHHHHTTCCSSCEEEEEETTE
T ss_pred             CHHHHHHHH----hcCCcEEEEEECCCChhHHHHhHHHHHHHHHcCCceEEEEECCCCHHHHHhCCccccCEEEEEECCe
Confidence            456677666    3578999999999999999999999999999988999999999999999999999999999999999


Q ss_pred             EEEEEeCC-ChHHHHHHHHHHhh
Q 032502          111 QVDKLVGA-NKPELQKKVAAAVD  132 (139)
Q Consensus       111 ~~~~~~g~-~~~~l~~~i~~~~~  132 (139)
                      ++.++.|. +.+++.++|.++++
T Consensus        81 ~~~~~~g~~~~~~l~~~l~~~l~  103 (104)
T 2e0q_A           81 PVDEIIGAVPREEIEIRIKNLLG  103 (104)
T ss_dssp             EEEEEESCCCHHHHHHHHHHHHT
T ss_pred             EhhhccCCCCHHHHHHHHHHHhc
Confidence            99999998 89999999998875

>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}

Probab=99.91  E-value=3.9e-23  Score=131.08  Aligned_cols=109  Identities=27%  Similarity=0.545  Sum_probs=95.9

Q ss_pred             CCceEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCC-CcEEEEEeCCcchhhhhhCCCccee
Q 032502           23 GGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP-SLMFLLVDVDELVEFSTSWDIKATP  101 (139)
Q Consensus        23 ~~~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~-~v~~~~vd~~~~~~~~~~~~v~~~P  101 (139)
                      ...+..+ +.++++..+    .++++++|+||++||++|+.+.|.++++++.+. ++.|+.+|+++++.++++|+|.++|
T Consensus        37 ~~~v~~l-~~~~~~~~~----~~~k~vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~P  111 (148)
T 3p2a_A           37 DGEVINA-TAETLDKLL----QDDLPMVIDFWAPWCGPCRSFAPIFAETAAERAGKVRFVKVNTEAEPALSTRFRIRSIP  111 (148)
T ss_dssp             CCCCEEC-CTTTHHHHT----TCSSCEEEEEECSSCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCSSS
T ss_pred             cCCceec-CHHHHHHHH----hcCCcEEEEEECCCCHHHHHHHHHHHHHHHHcCCceEEEEEECcCCHHHHHHCCCCccC
Confidence            3445554 456676665    568999999999999999999999999999995 5999999999999999999999999


Q ss_pred             EEEEEeCCeEEEEEeCC-ChHHHHHHHHHHhhccCC
Q 032502          102 TFFFLKDGQQVDKLVGA-NKPELQKKVAAAVDSVVP  136 (139)
Q Consensus       102 t~~~~~~g~~~~~~~g~-~~~~l~~~i~~~~~~~~~  136 (139)
                      |++++++|+++.++.|. +.+.|.++|++++.+.++
T Consensus       112 t~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l~~~~~  147 (148)
T 3p2a_A          112 TIMLYRNGKMIDMLNGAVPKAPFDNWLDEQLSRDPN  147 (148)
T ss_dssp             EEEEEETTEEEEEESSCCCHHHHHHHHHHHHHSCC-
T ss_pred             EEEEEECCeEEEEEeCCCCHHHHHHHHHHHhcccCC
Confidence            99999999999999998 999999999999887543

>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A

Probab=99.91  E-value=5.2e-24  Score=128.93  Aligned_cols=100  Identities=21%  Similarity=0.332  Sum_probs=88.4

Q ss_pred             EeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhhhhhCCCcceeEEEEEe
Q 032502           28 LVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLK  107 (139)
Q Consensus        28 ~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~  107 (139)
                      .+.+.++| +.+    .++++++|+||++||++|+.+.|.++++++.++++.|+.+|++.+++++++|++.++||+++++
T Consensus         6 ~~~~~~~f-~~~----~~~~~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~   80 (110)
T 2l6c_A            6 DITTEAGM-AHF----EGLSDAIVFFHKNLCPHCKNMEKVLDKFGARAPQVAISSVDSEARPELMKELGFERVPTLVFIR   80 (110)
T ss_dssp             BCGGGCSH-HHH----TTCSEEEEEEECSSCSTHHHHHHHHHHHHTTCTTSCEEEEEGGGCHHHHHHTTCCSSCEEEEEE
T ss_pred             ecCCHHHH-HHH----HcCCCEEEEEECCCCHhHHHHHHHHHHHHHHCCCcEEEEEcCcCCHHHHHHcCCcccCEEEEEE
Confidence            34556667 444    4578999999999999999999999999999989999999999999999999999999999999


Q ss_pred             CCeEEEEEeCC-ChHHHHHHHHHHhh
Q 032502          108 DGQQVDKLVGA-NKPELQKKVAAAVD  132 (139)
Q Consensus       108 ~g~~~~~~~g~-~~~~l~~~i~~~~~  132 (139)
                      +|+++.++.|. +.++|.++|.+...
T Consensus        81 ~G~~v~~~~G~~~~~~l~~~~~~~~~  106 (110)
T 2l6c_A           81 DGKVAKVFSGIMNPRELQALYASIHH  106 (110)
T ss_dssp             SSSEEEEEESCCCHHHHHHHHHTC--
T ss_pred             CCEEEEEEcCCCCHHHHHHHHHHHhh
Confidence            99999999997 99999998887644

>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ...

Probab=99.91  E-value=3.4e-23  Score=124.47  Aligned_cols=103  Identities=29%  Similarity=0.639  Sum_probs=90.8

Q ss_pred             eEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCC-CcEEEEEeCCcchhhhhhCCCcceeEEE
Q 032502           26 VSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP-SLMFLLVDVDELVEFSTSWDIKATPTFF  104 (139)
Q Consensus        26 ~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~-~v~~~~vd~~~~~~~~~~~~v~~~Pt~~  104 (139)
                      +..+ +.++|+..+.   .++++++|+||++||++|+.+.|.++++++.++ ++.++.+|+++++.++++|++.++||++
T Consensus         4 v~~l-~~~~f~~~~~---~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~   79 (108)
T 2trx_A            4 IIHL-TDDSFDTDVL---KADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLL   79 (108)
T ss_dssp             EEEC-CTTTHHHHTT---TCSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCTTHHHHTTCCSSSEEE
T ss_pred             ceec-chhhHHHHHH---hcCCeEEEEEECCCCHhHHHHHHHHHHHHHHhCCCcEEEEEECCCCHHHHHHcCCcccCEEE
Confidence            3443 4566665552   468999999999999999999999999999997 5999999999999999999999999999


Q ss_pred             EEeCCeEEEEEeCC-ChHHHHHHHHHHhh
Q 032502          105 FLKDGQQVDKLVGA-NKPELQKKVAAAVD  132 (139)
Q Consensus       105 ~~~~g~~~~~~~g~-~~~~l~~~i~~~~~  132 (139)
                      ++++|+++.++.|. +.++|.++|+++++
T Consensus        80 ~~~~G~~~~~~~G~~~~~~l~~~l~~~l~  108 (108)
T 2trx_A           80 LFKNGEVAATKVGALSKGQLKEFLDANLA  108 (108)
T ss_dssp             EEETTEEEEEEESCCCHHHHHHHHHHHHC
T ss_pred             EEeCCEEEEEEecCCCHHHHHHHHHHhhC
Confidence            99999999999998 89999999998763

>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}

Probab=99.91  E-value=2e-23  Score=129.63  Aligned_cols=104  Identities=28%  Similarity=0.600  Sum_probs=92.5

Q ss_pred             ceEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCC-CcEEEEEeCCcchhhhhhCCCcceeEE
Q 032502           25 NVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP-SLMFLLVDVDELVEFSTSWDIKATPTF  103 (139)
Q Consensus        25 ~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~-~v~~~~vd~~~~~~~~~~~~v~~~Pt~  103 (139)
                      .+..+ +.++|+..+.   .++++++|+||++||++|+.+.|.++++++.++ ++.|+.+|++++++++++|+|.++||+
T Consensus        23 ~v~~l-~~~~f~~~~~---~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~   98 (128)
T 2o8v_B           23 KIIHL-TDDSFDTDVL---KADGAILVDFWAEWCGPAKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTL   98 (128)
T ss_dssp             CSEEE-CTTTHHHHTT---TCSSEEEEEEECSSCHHHHHTHHHHHHHHHHTTTTEEEEEEETTTCCTTSGGGTCCSSSEE
T ss_pred             ccEec-ChhhHHHHHH---hcCCEEEEEEECCCCHHHHHHhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCCccCEE
Confidence            35555 5677766552   568999999999999999999999999999997 599999999999999999999999999


Q ss_pred             EEEeCCeEEEEEeCC-ChHHHHHHHHHHhh
Q 032502          104 FFLKDGQQVDKLVGA-NKPELQKKVAAAVD  132 (139)
Q Consensus       104 ~~~~~g~~~~~~~g~-~~~~l~~~i~~~~~  132 (139)
                      +++++|+++.++.|. +.++|.++|+++++
T Consensus        99 ~~~~~G~~~~~~~G~~~~~~l~~~l~~~l~  128 (128)
T 2o8v_B           99 LLFKNGEVAATKVGALSKGQLKEFLDANLA  128 (128)
T ss_dssp             EEEETTEEEEEEESCCCHHHHHHHHHHHHC
T ss_pred             EEEeCCEEEEEEcCCCCHHHHHHHHHHhhC
Confidence            999999999999998 89999999998763

>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A

Probab=99.91  E-value=2.1e-23  Score=126.58  Aligned_cols=101  Identities=34%  Similarity=0.565  Sum_probs=90.7

Q ss_pred             chhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCC-CcEEEEEeCCcchhhhhhCCCcceeEEEEEeCC
Q 032502           31 TKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP-SLMFLLVDVDELVEFSTSWDIKATPTFFFLKDG  109 (139)
Q Consensus        31 ~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~-~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g  109 (139)
                      +.++|++.+     ++++++|+||++||++|+.+.|.+.+++++++ ++.|+.+|++++.+++++|+|.++||++++++|
T Consensus         7 ~~~~~~~~~-----~~~~~lv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~G   81 (112)
T 2voc_A            7 TDQSFSAET-----SEGVVLADFWAPWCGPSKMIAPVLEELDQEMGDKLKIVKIDVDENQETAGKYGVMSIPTLLVLKDG   81 (112)
T ss_dssp             CTTTHHHHH-----SSSEEEEEEECTTBGGGGGHHHHHHHHHHHHTTTCEEEEEETTTCCSHHHHTTCCSBSEEEEEETT
T ss_pred             cHHHHHHHh-----CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCcEEEEEECCCCHHHHHHcCCCcccEEEEEeCC
Confidence            446666655     58999999999999999999999999999986 599999999999999999999999999999999


Q ss_pred             eEEEEEeCC-ChHHHHHHHHHHhhccCC
Q 032502          110 QQVDKLVGA-NKPELQKKVAAAVDSVVP  136 (139)
Q Consensus       110 ~~~~~~~g~-~~~~l~~~i~~~~~~~~~  136 (139)
                      +++.++.|. +.++|.++|.+.+....+
T Consensus        82 ~~~~~~~G~~~~~~l~~~l~~~~~~~~~  109 (112)
T 2voc_A           82 EVVETSVGFKPKEALQELVNKHLLEHHH  109 (112)
T ss_dssp             EEEEEEESCCCHHHHHHHHHTTSCSCCC
T ss_pred             EEEEEEeCCCCHHHHHHHHHHHHHhhcc
Confidence            999999999 899999999988765544

>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1

Probab=99.91  E-value=5.4e-23  Score=124.75  Aligned_cols=105  Identities=21%  Similarity=0.482  Sum_probs=93.1

Q ss_pred             ceEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCC-CcEEEEEeCCcchhhhhhCCCcceeEE
Q 032502           25 NVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP-SLMFLLVDVDELVEFSTSWDIKATPTF  103 (139)
Q Consensus        25 ~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~-~v~~~~vd~~~~~~~~~~~~v~~~Pt~  103 (139)
                      .+..+ +.++|...+.   .++++++|+||++||++|+.+.|.++++++.++ ++.|+.+|++.++.++++|+|.++|++
T Consensus         8 ~v~~l-~~~~~~~~~~---~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~~~~~~~~~~~~v~~~Pt~   83 (115)
T 1thx_A            8 GVITI-TDAEFESEVL---KAEQPVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEIDPNPTTVKKYKVEGVPAL   83 (115)
T ss_dssp             SEEEC-CGGGHHHHTT---TCSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTTTCEEEEEESTTCHHHHHHTTCCSSSEE
T ss_pred             ceEEe-eccchhhHhh---cCCceEEEEEECCCCHHHHHhHHHHHHHHHHhCCcEEEEEEEcCCCHHHHHHcCCCceeEE
Confidence            35555 5677776652   468999999999999999999999999999997 599999999999999999999999999


Q ss_pred             EEEeCCeEEEEEeCC-ChHHHHHHHHHHhhc
Q 032502          104 FFLKDGQQVDKLVGA-NKPELQKKVAAAVDS  133 (139)
Q Consensus       104 ~~~~~g~~~~~~~g~-~~~~l~~~i~~~~~~  133 (139)
                      +++++|+++.++.|. +.++|.++|+++++.
T Consensus        84 ~~~~~G~~~~~~~g~~~~~~l~~~l~~~l~~  114 (115)
T 1thx_A           84 RLVKGEQILDSTEGVISKDKLLSFLDTHLNN  114 (115)
T ss_dssp             EEEETTEEEEEEESCCCHHHHHHHHHHHHC-
T ss_pred             EEEcCCEEEEEecCCCCHHHHHHHHHHHhcC
Confidence            999999999999998 899999999998764

>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor}

Probab=99.91  E-value=3.4e-23  Score=125.30  Aligned_cols=103  Identities=27%  Similarity=0.577  Sum_probs=90.4

Q ss_pred             eEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCC-CcEEEEEeCCcchhhhhhCCCcceeEEE
Q 032502           26 VSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP-SLMFLLVDVDELVEFSTSWDIKATPTFF  104 (139)
Q Consensus        26 ~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~-~v~~~~vd~~~~~~~~~~~~v~~~Pt~~  104 (139)
                      +..+ +.+++...+.   .++++++|+||++||++|+.+.|.+.++++.++ ++.++.+|++.+++++++|++.++||++
T Consensus         7 v~~l-~~~~~~~~~~---~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~   82 (112)
T 1t00_A            7 LKHV-TDDSFEQDVL---KNDKPVLVDFWAAWCGPCRQIAPSLEAIAAEYGDKIEIVKLNIDENPGTAAKYGVMSIPTLN   82 (112)
T ss_dssp             CEEE-CTTTHHHHTT---TCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCSSSEEE
T ss_pred             EEec-chhhHHHHHh---hCCCeEEEEEECCCCHhHHhcCHHHHHHHHHhcCCeEEEEEEcCCCHHHHHhCCCCcccEEE
Confidence            4444 4456655543   458999999999999999999999999999996 5999999999999999999999999999


Q ss_pred             EEeCCeEEEEEeCC-ChHHHHHHHHHHhh
Q 032502          105 FLKDGQQVDKLVGA-NKPELQKKVAAAVD  132 (139)
Q Consensus       105 ~~~~g~~~~~~~g~-~~~~l~~~i~~~~~  132 (139)
                      ++++|+++.++.|. +.++|.++|+++++
T Consensus        83 ~~~~G~~~~~~~G~~~~~~l~~~l~~~l~  111 (112)
T 1t00_A           83 VYQGGEVAKTIVGAKPKAAIVRDLEDFIA  111 (112)
T ss_dssp             EEETTEEEEEEESCCCHHHHHHHTHHHHC
T ss_pred             EEeCCEEEEEEeCCCCHHHHHHHHHHHhh
Confidence            99999999999999 88999999998864

>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei}

Probab=99.91  E-value=2.8e-23  Score=130.78  Aligned_cols=106  Identities=23%  Similarity=0.426  Sum_probs=93.7

Q ss_pred             CceEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCC-cEEEEEeCCcchhhhhhCCCcceeE
Q 032502           24 GNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVDELVEFSTSWDIKATPT  102 (139)
Q Consensus        24 ~~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~-v~~~~vd~~~~~~~~~~~~v~~~Pt  102 (139)
                      ..+..+ +.++|.+.+.   .+++++||+||++||++|+.+.|.+.++++.+++ +.|+.+|+++++.++++|+|.++||
T Consensus         6 ~~v~~l-~~~~f~~~~~---~~~~~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt   81 (140)
T 3hz4_A            6 SSIIEF-EDMTWSQQVE---DSKKPVVVMFYSPACPYCKAMEPYFEEYAKEYGSSAVFGRINIATNPWTAEKYGVQGTPT   81 (140)
T ss_dssp             TTEEEE-CHHHHHHHTT---TCSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTSEEEEEETTTCHHHHHHHTCCEESE
T ss_pred             cceEEc-chHhHHHHHH---hCCCcEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCcCHhHHHHCCCCcCCE
Confidence            345554 5566664443   4589999999999999999999999999999986 9999999999999999999999999


Q ss_pred             EEEEeCCeEEEEEeCC-ChHHHHHHHHHHhhc
Q 032502          103 FFFLKDGQQVDKLVGA-NKPELQKKVAAAVDS  133 (139)
Q Consensus       103 ~~~~~~g~~~~~~~g~-~~~~l~~~i~~~~~~  133 (139)
                      ++++++|+++.++.|. +.+.|.++|.+++..
T Consensus        82 ~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l~~  113 (140)
T 3hz4_A           82 FKFFCHGRPVWEQVGQIYPSILKNAVRDMLQH  113 (140)
T ss_dssp             EEEEETTEEEEEEESSCCHHHHHHHHHHHHHH
T ss_pred             EEEEeCCcEEEEEcCCCCHHHHHHHHHHHhcc
Confidence            9999999999999999 899999999998865

>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum}

Probab=99.91  E-value=6.2e-24  Score=132.77  Aligned_cols=113  Identities=23%  Similarity=0.386  Sum_probs=98.2

Q ss_pred             cccCCCceEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhhhhhCCCc
Q 032502           19 VEFAGGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIK   98 (139)
Q Consensus        19 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~   98 (139)
                      .....+.+..+.+.+++...+..  .+++++||+||++||++|+.+.|.++++++.+ ++.|+.+|++++.+++++|+|.
T Consensus        15 ~~~~~~~v~~l~~~~~~~~~l~~--~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~-~v~~~~vd~~~~~~l~~~~~v~   91 (133)
T 3cxg_A           15 YFQGQSIYIELKNTGSLNQVFSS--TQNSSIVIKFGAVWCKPCNKIKEYFKNQLNYY-YVTLVDIDVDIHPKLNDQHNIK   91 (133)
T ss_dssp             EEETTEEEEECCCTTHHHHHHTC---CCSEEEEEEECTTCHHHHHTHHHHHGGGGTE-ECEEEEEETTTCHHHHHHTTCC
T ss_pred             cccCCccEEEecChhHHHHHHHh--cCCCEEEEEEECCCCHHHHHHHHHHHHHHHhc-CEEEEEEeccchHHHHHhcCCC
Confidence            34556678888888888877742  34789999999999999999999999998887 7999999999999999999999


Q ss_pred             ceeEEEEEe--CCe--EEEEEeCCChHHHHHHHHHHhhcc
Q 032502           99 ATPTFFFLK--DGQ--QVDKLVGANKPELQKKVAAAVDSV  134 (139)
Q Consensus        99 ~~Pt~~~~~--~g~--~~~~~~g~~~~~l~~~i~~~~~~~  134 (139)
                      ++||+++++  +|+  ++.++.|.+.++|.++|.+++...
T Consensus        92 ~~Pt~~~~~~~~g~g~~~~~~~G~~~~~l~~~l~~~l~~~  131 (133)
T 3cxg_A           92 ALPTFEFYFNLNNEWVLVHTVEGANQNDIEKAFQKYCLEK  131 (133)
T ss_dssp             SSSEEEEEEEETTEEEEEEEEESCCHHHHHHHHHHHSEEC
T ss_pred             CCCEEEEEEecCCCeEEEEEEcCCCHHHHHHHHHHHHHhh
Confidence            999999996  888  888998998899999999987653

>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens}

Probab=99.91  E-value=2e-23  Score=127.87  Aligned_cols=101  Identities=24%  Similarity=0.386  Sum_probs=84.2

Q ss_pred             CceEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhhhhhCCCcceeEE
Q 032502           24 GNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTF  103 (139)
Q Consensus        24 ~~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~  103 (139)
                      +.+.++ +.++|.+.+..+ ..+++++|+||++||++|+.+.|.|++++++|+++.|+.+|.++.   +.+|+|.++||+
T Consensus         3 G~v~~i-t~~~f~~~v~~~-~~~~~vvv~F~a~wc~~C~~~~p~l~~la~~~~~v~f~kvd~d~~---~~~~~v~~~PT~   77 (118)
T 3evi_A            3 GELREI-SGNQYVNEVTNA-EEDVWVIIHLYRSSIPMCLLVNQHLSLLARKFPETKFVKAIVNSC---IQHYHDNCLPTI   77 (118)
T ss_dssp             CSCEEC-CGGGHHHHTTTC-CTTCEEEEEEECTTSHHHHHHHHHHHHHHHHCTTSEEEEEEGGGT---STTCCGGGCSEE
T ss_pred             cceEEe-CHHHHHHHHHhc-CCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCCEEEEEEhHHh---HHHCCCCCCCEE
Confidence            456677 567787777422 123499999999999999999999999999999999999999986   589999999999


Q ss_pred             EEEeCCeEEEEEeCC--------ChHHHHHHHHH
Q 032502          104 FFLKDGQQVDKLVGA--------NKPELQKKVAA  129 (139)
Q Consensus       104 ~~~~~g~~~~~~~g~--------~~~~l~~~i~~  129 (139)
                      ++|++|+.+.++.|.        +.++|+.+|.+
T Consensus        78 ~~fk~G~~v~~~~G~~~~gg~~~~~~~le~~L~~  111 (118)
T 3evi_A           78 FVYKNGQIEAKFIGIIECGGINLKLEELEWKLAE  111 (118)
T ss_dssp             EEEETTEEEEEEESTTTTTCSSCCHHHHHHHHHT
T ss_pred             EEEECCEEEEEEeChhhhCCCCCCHHHHHHHHHH
Confidence            999999999999986        35666666654

>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis}

Probab=99.91  E-value=5e-23  Score=126.13  Aligned_cols=105  Identities=23%  Similarity=0.544  Sum_probs=92.2

Q ss_pred             ceEEee-chhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhhhhhCCCcceeEE
Q 032502           25 NVSLVT-TKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTF  103 (139)
Q Consensus        25 ~~~~i~-~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~  103 (139)
                      .+..+. +.++|.+.+.   .+++++||+||++||++|+.+.|.+.++++.++++.|+.+|++++++++++|+|.++||+
T Consensus         4 ~v~~~~g~~~~~~~~~~---~~~~~vlv~f~a~wC~~C~~~~~~l~~l~~~~~~v~~~~vd~~~~~~~~~~~~i~~~Pt~   80 (118)
T 2f51_A            4 PIVHFNGTHEALLNRIK---EAPGLVLVDFFATWCGPCQRLGQILPSIAEANKDVTFIKVDVDKNGNAADAYGVSSIPAL   80 (118)
T ss_dssp             CSEEECSCHHHHHHHHH---HCSSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTCHHHHHHTTCCSSSEE
T ss_pred             cceEecCCHHHHHHHHH---hCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCeEEEEEECCCCHHHHHhcCCCCCCEE
Confidence            456666 6677765553   358999999999999999999999999999998899999999999999999999999999


Q ss_pred             EEEeC----CeEEEEEeCCChHHHHHHHHHHhh
Q 032502          104 FFLKD----GQQVDKLVGANKPELQKKVAAAVD  132 (139)
Q Consensus       104 ~~~~~----g~~~~~~~g~~~~~l~~~i~~~~~  132 (139)
                      +++++    |+++.++.|...++|.+.+.+...
T Consensus        81 ~~~~~~~~~G~~~~~~~G~~~~~l~~~~~~~~~  113 (118)
T 2f51_A           81 FFVKKEGNEIKTLDQFVGADVSRIKADIEKFKH  113 (118)
T ss_dssp             EEEEEETTEEEEEEEEESCCHHHHHHHHHHHC-
T ss_pred             EEEeCCCCcceEEEeecCCCHHHHHHHHHHhhh
Confidence            99987    999999999987889998888754

>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A

Probab=99.91  E-value=1.6e-23  Score=131.71  Aligned_cols=112  Identities=29%  Similarity=0.559  Sum_probs=91.3

Q ss_pred             ccCCCceEEeechhHHHHHHHHHh--------hCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCC-CcEEEEEeCCcchh
Q 032502           20 EFAGGNVSLVTTKDIWDQKMSEAS--------KEGKIVIANFSATWCGPCRMIAPFFSELSEKYP-SLMFLLVDVDELVE   90 (139)
Q Consensus        20 ~~~~~~~~~i~~~~~~~~~~~~~~--------~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~-~v~~~~vd~~~~~~   90 (139)
                      ......+..+ +.++|...+....        .+++++||+||++||++|+.+.|.+.++++.++ ++.|+.+|++.++.
T Consensus        18 ~~~~~~v~~l-~~~~f~~~l~~~~~~~~~l~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~   96 (141)
T 3hxs_A           18 EKPQSGTIHL-TRAEFLKKIADYENHSKEWKYLGDKPAIVDFYADWCGPCKMVAPILEELSKEYAGKIYIYKVNVDKEPE   96 (141)
T ss_dssp             -----CCEEC-CHHHHHHHTCCCSSCCCCCCCCCSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTTTCEEEEEETTTCHH
T ss_pred             cCCCCCcccc-cHHHHHHHhhccccchhHHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCceEEEEEECCCCHH
Confidence            3444455555 6677777664321        147999999999999999999999999999998 59999999999999


Q ss_pred             hhhhCCCcceeEEEEE-eCCeEEEEEeCC-ChHHHHHHHHHHhhc
Q 032502           91 FSTSWDIKATPTFFFL-KDGQQVDKLVGA-NKPELQKKVAAAVDS  133 (139)
Q Consensus        91 ~~~~~~v~~~Pt~~~~-~~g~~~~~~~g~-~~~~l~~~i~~~~~~  133 (139)
                      ++++|+|.++||++++ .+|+++ ++.|. +.++|.++|++++.+
T Consensus        97 ~~~~~~v~~~Pt~~~~~~~g~~~-~~~G~~~~~~l~~~l~~~l~k  140 (141)
T 3hxs_A           97 LARDFGIQSIPTIWFVPMKGEPQ-VNMGALSKEQLKGYIDKVLLK  140 (141)
T ss_dssp             HHHHTTCCSSSEEEEECSSSCCE-EEESCCCHHHHHHHHHHTTC-
T ss_pred             HHHHcCCCCcCEEEEEeCCCCEE-EEeCCCCHHHHHHHHHHHHcc
Confidence            9999999999999999 778776 77788 999999999998764

>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.91  E-value=4.7e-23  Score=129.33  Aligned_cols=107  Identities=21%  Similarity=0.436  Sum_probs=93.0

Q ss_pred             CceEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCC----cEEEEEeCCcchhhhhhCCCcc
Q 032502           24 GNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS----LMFLLVDVDELVEFSTSWDIKA   99 (139)
Q Consensus        24 ~~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~----v~~~~vd~~~~~~~~~~~~v~~   99 (139)
                      ..+..+ +.++|+..+    .+++++||+||++||++|+.+.|.+.++++.+.+    +.|+.+|++++..++++|+|.+
T Consensus        17 ~~v~~l-~~~~~~~~~----~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~   91 (140)
T 2dj1_A           17 NGVWVL-NDGNFDNFV----ADKDTVLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDATSASMLASKFDVSG   91 (140)
T ss_dssp             TTEEEC-CTTTHHHHH----TTCSEEEEEECCTTCHHHHTTHHHHHHHHHHHHSSSSCCEEEEECTTTCHHHHHHTTCCS
T ss_pred             CCCEEc-ChHhHHHHH----hcCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhccCCceEEEEEeCcccHHHHHHCCCCc
Confidence            345665 677777665    4589999999999999999999999999888753    9999999999999999999999


Q ss_pred             eeEEEEEeCCeEEEEEeCC-ChHHHHHHHHHHhhccCC
Q 032502          100 TPTFFFLKDGQQVDKLVGA-NKPELQKKVAAAVDSVVP  136 (139)
Q Consensus       100 ~Pt~~~~~~g~~~~~~~g~-~~~~l~~~i~~~~~~~~~  136 (139)
                      +||++++++|+ +.++.|. +.+.|.++|.+++.....
T Consensus        92 ~Pt~~~~~~G~-~~~~~g~~~~~~l~~~l~~~~~~~~~  128 (140)
T 2dj1_A           92 YPTIKILKKGQ-AVDYDGSRTQEEIVAKVREVSQPDWT  128 (140)
T ss_dssp             SSEEEEEETTE-EEECCSCCCHHHHHHHHHHHHSSSCC
T ss_pred             cCeEEEEECCc-EEEcCCCCCHHHHHHHHHHhcCCCCC
Confidence            99999999999 6677787 999999999999876543

>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1

Probab=99.91  E-value=4.4e-23  Score=123.79  Aligned_cols=98  Identities=28%  Similarity=0.637  Sum_probs=88.3

Q ss_pred             chhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCC-cEEEEEeCCcchhhhhhCCCcceeEEEEEeCC
Q 032502           31 TKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVDELVEFSTSWDIKATPTFFFLKDG  109 (139)
Q Consensus        31 ~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~-v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g  109 (139)
                      +.++|...+.   .++++++|+||++||++|+.+.|.++++++.+++ +.++.+|++.+++++++|++.++||++++++|
T Consensus         7 ~~~~~~~~~~---~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~G   83 (107)
T 1dby_A            7 NDDTFKNVVL---ESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDESPNVASEYGIRSIPTIMVFKGG   83 (107)
T ss_dssp             CHHHHHHHTT---TCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHHTCCSSCEEEEESSS
T ss_pred             cHHHHHHHHh---cCCCcEEEEEECCCCHhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHHHHHCCCCcCCEEEEEeCC
Confidence            5566665553   4589999999999999999999999999999974 99999999999999999999999999999999


Q ss_pred             eEEEEEeCC-ChHHHHHHHHHHh
Q 032502          110 QQVDKLVGA-NKPELQKKVAAAV  131 (139)
Q Consensus       110 ~~~~~~~g~-~~~~l~~~i~~~~  131 (139)
                      +++.++.|. +.++|.++|++++
T Consensus        84 ~~~~~~~G~~~~~~l~~~l~~~l  106 (107)
T 1dby_A           84 KKCETIIGAVPKATIVQTVEKYL  106 (107)
T ss_dssp             SEEEEEESCCCHHHHHHHHHHHC
T ss_pred             EEEEEEeCCCCHHHHHHHHHHHh
Confidence            999999998 8899999998876

>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus}

Probab=99.91  E-value=8e-23  Score=130.86  Aligned_cols=106  Identities=23%  Similarity=0.489  Sum_probs=93.1

Q ss_pred             CCceEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCC-CcEEEEEeCCcchhhhhhCCCccee
Q 032502           23 GGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP-SLMFLLVDVDELVEFSTSWDIKATP  101 (139)
Q Consensus        23 ~~~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~-~v~~~~vd~~~~~~~~~~~~v~~~P  101 (139)
                      .+.+..+ +.++|...+    .+++++||+||++||++|+.+.|.+++++++++ ++.|+.+|+++++.++++|+|.++|
T Consensus        46 ~~~~~~l-~~~~f~~~~----~~~~~vlv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P  120 (155)
T 2ppt_A           46 TGKVAGI-DPAILARAE----RDDLPLLVDFWAPWCGPCRQMAPQFQAAAATLAGQVRLAKIDTQAHPAVAGRHRIQGIP  120 (155)
T ss_dssp             CSSEEEC-CHHHHHHHT----TCSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTCEEEEEETTTSTHHHHHTTCCSSS
T ss_pred             CCCCccC-CHHHHHHHH----hCCCcEEEEEECCCCHHHHHHHHHHHHHHHHccCCEEEEEEeCCccHHHHHHcCCCcCC
Confidence            3344454 456666655    468999999999999999999999999999987 5999999999999999999999999


Q ss_pred             EEEEEeCCeEEEEEeCC-ChHHHHHHHHHHhhc
Q 032502          102 TFFFLKDGQQVDKLVGA-NKPELQKKVAAAVDS  133 (139)
Q Consensus       102 t~~~~~~g~~~~~~~g~-~~~~l~~~i~~~~~~  133 (139)
                      |+++|++|+++.++.|. +.++|.++|+++++.
T Consensus       121 t~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l~~  153 (155)
T 2ppt_A          121 AFILFHKGRELARAAGARPASELVGFVRGKLGA  153 (155)
T ss_dssp             EEEEEETTEEEEEEESCCCHHHHHHHHHHHHC-
T ss_pred             EEEEEeCCeEEEEecCCCCHHHHHHHHHHHhcc
Confidence            99999999999999998 899999999998764

>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1

Probab=99.91  E-value=7.1e-23  Score=126.12  Aligned_cols=106  Identities=31%  Similarity=0.580  Sum_probs=92.0

Q ss_pred             CCceEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCC-cchhhhhhCCCccee
Q 032502           23 GGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVD-ELVEFSTSWDIKATP  101 (139)
Q Consensus        23 ~~~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~-~~~~~~~~~~v~~~P  101 (139)
                      .+.+..+ +.+++...+..  .++++++|+||++||++|+.+.|.+++++++++++.++.+|++ ++.+++++|+|.++|
T Consensus        17 ~~~v~~l-~~~~~~~~~~~--~~~~~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~~~~~vd~~~~~~~~~~~~~v~~~P   93 (124)
T 1faa_A           17 VGKVTEV-NKDTFWPIVKA--AGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLDVIFLKLDCNQENKTLAKELGIRVVP   93 (124)
T ss_dssp             TTSEEEE-CTTTHHHHHHH--TTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEECSSTTHHHHHHHCCSSSS
T ss_pred             CCceEEe-cchhHHHHHHh--cCCCEEEEEEECCcCHhHHHHhHHHHHHHHHCCCCEEEEEecCcchHHHHHHcCCCeee
Confidence            3445555 45667766642  3689999999999999999999999999999999999999998 689999999999999


Q ss_pred             EEEEEeCCeEEEEEeCCChHHHHHHHHHHh
Q 032502          102 TFFFLKDGQQVDKLVGANKPELQKKVAAAV  131 (139)
Q Consensus       102 t~~~~~~g~~~~~~~g~~~~~l~~~i~~~~  131 (139)
                      |++++++|+++.++.|...++|.++|++++
T Consensus        94 t~~~~~~G~~~~~~~G~~~~~l~~~i~~~~  123 (124)
T 1faa_A           94 TFKILKENSVVGEVTGAKYDKLLEAIQAAR  123 (124)
T ss_dssp             EEEEEETTEEEEEEESSCHHHHHHHHHHHT
T ss_pred             EEEEEeCCcEEEEEcCCCHHHHHHHHHHhh
Confidence            999999999999999988888999888764

>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A

Probab=99.91  E-value=2.9e-23  Score=124.20  Aligned_cols=97  Identities=32%  Similarity=0.642  Sum_probs=86.2

Q ss_pred             chhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCC-cEEEEEeCCcchhhhhhCCCcceeEEEEEeCC
Q 032502           31 TKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVDELVEFSTSWDIKATPTFFFLKDG  109 (139)
Q Consensus        31 ~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~-v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g  109 (139)
                      +.++|+..+    .++++++|+||++||++|+.+.|.++++++.+++ +.++.+|++++++++++|++.++||++++++|
T Consensus         6 ~~~~~~~~~----~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~G   81 (105)
T 1nsw_A            6 TDANFQQAI----QGDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETTSQFGIMSIPTLILFKGG   81 (105)
T ss_dssp             CTTTHHHHH----SSSSCEEEEEECTTCHHHHHHHHHHHHHHHHSTTTCEEEEEETTTCHHHHHHTTCCSSSEEEEEETT
T ss_pred             cHHhHHHHH----hCCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECcCCHHHHHHcCCccccEEEEEeCC
Confidence            445565433    4678999999999999999999999999999975 99999999999999999999999999999999


Q ss_pred             eEEEEEeCC-ChHHHHHHHHHHh
Q 032502          110 QQVDKLVGA-NKPELQKKVAAAV  131 (139)
Q Consensus       110 ~~~~~~~g~-~~~~l~~~i~~~~  131 (139)
                      +++.++.|. +.++|.++|++++
T Consensus        82 ~~~~~~~G~~~~~~l~~~l~~~l  104 (105)
T 1nsw_A           82 RPVKQLIGYQPKEQLEAQLADVL  104 (105)
T ss_dssp             EEEEEEESCCCHHHHHHHTTTTT
T ss_pred             eEEEEEecCCCHHHHHHHHHHHh
Confidence            999999998 8888988887664

>1qgv_A Spliceosomal protein U5-15KD; snRNP, thioredoxin, transcription; 1.40A {Homo sapiens} SCOP: c.47.1.8 PDB: 1syx_A 1pqn_A

Probab=99.90  E-value=4.2e-23  Score=130.39  Aligned_cols=109  Identities=17%  Similarity=0.310  Sum_probs=92.4

Q ss_pred             eEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCC-CcEEEEEeCCcchhhhhhCCCcceeEEE
Q 032502           26 VSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP-SLMFLLVDVDELVEFSTSWDIKATPTFF  104 (139)
Q Consensus        26 ~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~-~v~~~~vd~~~~~~~~~~~~v~~~Pt~~  104 (139)
                      +..+.+.++|+..+..  .++++++|+||++||++|+.+.|.++++++++. ++.|+.+|++++++++++|+|.++||++
T Consensus         5 l~~i~~~~~~~~~v~~--~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~i~~~Pt~~   82 (142)
T 1qgv_A            5 LPHLHNGWQVDQAILS--EEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEVPDFNKMYELYDPCTVM   82 (142)
T ss_dssp             SCBCCSHHHHHHHHHT--CSSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTCCTTTTSSCSCSSCEEE
T ss_pred             HhccCCHHHHHHHHHh--cCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEccccCHHHHHHcCCCCCCEEE
Confidence            4456677888776642  158999999999999999999999999999985 5999999999999999999999999999


Q ss_pred             EEeCCeEEEE---------EeCC--ChHHHHHHHHHHhhccCC
Q 032502          105 FLKDGQQVDK---------LVGA--NKPELQKKVAAAVDSVVP  136 (139)
Q Consensus       105 ~~~~g~~~~~---------~~g~--~~~~l~~~i~~~~~~~~~  136 (139)
                      +|++|+++..         ..|.  +.++|.++|+++++....
T Consensus        83 ~~~~G~~v~~~~g~~~~~~~~g~~~~~~~l~~~i~~~~~~~~~  125 (142)
T 1qgv_A           83 FFFRNKHIMIDLGTGNNNKINWAMEDKQEMVDIIETVYRGARK  125 (142)
T ss_dssp             EEETTEEEEEECC------CCSCCSCHHHHHHHHHHHHHHHTT
T ss_pred             EEECCcEEEEecCCCCcceeeeecCcHHHHHHHHHHHHHHHhc
Confidence            9999999874         4444  488999999998876543

>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa}

Probab=99.90  E-value=3.7e-25  Score=137.21  Aligned_cols=116  Identities=46%  Similarity=0.873  Sum_probs=104.5

Q ss_pred             CCCceEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhhhhhCCCccee
Q 032502           22 AGGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATP  101 (139)
Q Consensus        22 ~~~~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P  101 (139)
                      ..+.+..+.+.++++..+..+..++++++|+||++||++|+.+.+.+.++++.++++.|+.+|++.+..++++|+|.++|
T Consensus        12 ~~~~~~~i~~~~~~~~~l~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~v~~~~~~~~~~~~~v~~~P   91 (130)
T 1wmj_A           12 EEGVVIACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAVFLKVDVDELKEVAEKYNVEAMP   91 (130)
T ss_dssp             SCSSSBCCSSSHHHHHHHHHHHTTTCBCBEECCSSSCSCSSSSHHHHHHHHHHCTTBCCEECCTTTSGGGHHHHTCCSSC
T ss_pred             cCcceEEcCCHHHHHHHHHHHhhcCCEEEEEEECCCChhHHHHHHHHHHHHHHCCCCEEEEEeccchHHHHHHcCCCccc
Confidence            34567778888999999987766789999999999999999999999999999989999999999999999999999999


Q ss_pred             EEEEEeCCeEEEEEeCCChHHHHHHHHHHhhccCCC
Q 032502          102 TFFFLKDGQQVDKLVGANKPELQKKVAAAVDSVVPS  137 (139)
Q Consensus       102 t~~~~~~g~~~~~~~g~~~~~l~~~i~~~~~~~~~~  137 (139)
                      |++++++|+++.++.|.+.++|.++|.+++......
T Consensus        92 t~~~~~~g~~~~~~~g~~~~~l~~~l~~~~~~~~~~  127 (130)
T 1wmj_A           92 TFLFIKDGAEADKVVGARKDDLQNTIVKHVGATAAS  127 (130)
T ss_dssp             CCCBCTTTTCCBCCCTTCTTTHHHHHHHHTSSSCSS
T ss_pred             eEEEEeCCeEEEEEeCCCHHHHHHHHHHHHhccCCC
Confidence            999999999998888888889999999998776543

>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C

Probab=99.90  E-value=9.7e-23  Score=121.76  Aligned_cols=98  Identities=29%  Similarity=0.694  Sum_probs=87.6

Q ss_pred             chhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCC-cEEEEEeCCcchhhhhhCCCcceeEEEEEeCC
Q 032502           31 TKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVDELVEFSTSWDIKATPTFFFLKDG  109 (139)
Q Consensus        31 ~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~-v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g  109 (139)
                      +.++|...+.   .++++++|+||++||++|+.+.|.++++++++++ +.++.+|+++++.++++|++.++||++++++|
T Consensus         6 ~~~~~~~~~~---~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g   82 (105)
T 1fb6_A            6 NDSSWKEFVL---ESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPGIATQYNIRSIPTVLFFKNG   82 (105)
T ss_dssp             CTTTHHHHTT---TCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCSSSEEEEEETT
T ss_pred             hhhhHHHHHh---cCCCcEEEEEECCCChHHHHHHHHHHHHHHHhcCceEEEEEcCcchHHHHHhCCCCcccEEEEEeCC
Confidence            4556665553   4578999999999999999999999999999975 99999999999999999999999999999999


Q ss_pred             eEEEEEeCC-ChHHHHHHHHHHh
Q 032502          110 QQVDKLVGA-NKPELQKKVAAAV  131 (139)
Q Consensus       110 ~~~~~~~g~-~~~~l~~~i~~~~  131 (139)
                      +++.++.|. +.+++.++|++++
T Consensus        83 ~~~~~~~G~~~~~~l~~~l~~~l  105 (105)
T 1fb6_A           83 ERKESIIGAVPKSTLTDSIEKYL  105 (105)
T ss_dssp             EEEEEEEECCCHHHHHHHHHHHC
T ss_pred             eEEEEEecCCCHHHHHHHHHhhC
Confidence            999999998 8899999998764

>2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A

Probab=99.90  E-value=9.4e-23  Score=122.41  Aligned_cols=99  Identities=35%  Similarity=0.693  Sum_probs=88.0

Q ss_pred             chhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCC-CcEEEEEeCCcchhhhhhCCCcceeEEEEEeCC
Q 032502           31 TKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP-SLMFLLVDVDELVEFSTSWDIKATPTFFFLKDG  109 (139)
Q Consensus        31 ~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~-~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g  109 (139)
                      +.++|+..+    .++++++|+||++||++|+.+.+.++++++.++ ++.++.+|++.++.++++|++.++||++++++|
T Consensus         7 ~~~~~~~~~----~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g   82 (109)
T 2yzu_A            7 TDQNFDETL----GQHPLVLVDFWAEWCAPCRMIAPILEEIAKEYEGKLLVAKLDVDENPKTAMRYRVMSIPTVILFKDG   82 (109)
T ss_dssp             CTTTHHHHH----HHCSEEEEEEECTTCHHHHHHHHHHHHHHHHTBTTBEEEEEETTTCHHHHHHTTCCSSSEEEEEETT
T ss_pred             cHhHHHHHh----cCCCeEEEEEECCCCHHHHHhhHHHHHHHHHhhCceEEEEEECCCCHhHHHhCCCCcCCEEEEEeCC
Confidence            456666444    457899999999999999999999999999998 599999999999999999999999999999999


Q ss_pred             eEEEEEeCC-ChHHHHHHHHHHhhc
Q 032502          110 QQVDKLVGA-NKPELQKKVAAAVDS  133 (139)
Q Consensus       110 ~~~~~~~g~-~~~~l~~~i~~~~~~  133 (139)
                      +++.++.|. +.++|.++|.++++.
T Consensus        83 ~~~~~~~g~~~~~~l~~~l~~~l~~  107 (109)
T 2yzu_A           83 QPVEVLVGAQPKRNYQAKIEKHLPA  107 (109)
T ss_dssp             EEEEEEESCCCHHHHHHHHHTTC--
T ss_pred             cEeeeEeCCCCHHHHHHHHHHHhhh
Confidence            999999998 899999999988754

>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus}

Probab=99.90  E-value=1.5e-22  Score=126.83  Aligned_cols=113  Identities=27%  Similarity=0.553  Sum_probs=95.6

Q ss_pred             CceEEeechhHHHHHHHHHh--------hCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCC-CcEEEEEeCCcchhhhhh
Q 032502           24 GNVSLVTTKDIWDQKMSEAS--------KEGKIVIANFSATWCGPCRMIAPFFSELSEKYP-SLMFLLVDVDELVEFSTS   94 (139)
Q Consensus        24 ~~~~~i~~~~~~~~~~~~~~--------~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~-~v~~~~vd~~~~~~~~~~   94 (139)
                      +.+..+ +.++|.+.+....        .++++++|+||++||++|+.+.|.+.++++.++ ++.|+.+|++++..++++
T Consensus         9 ~~v~~l-~~~~f~~~v~~~~~~~~~~~~~~~k~~lv~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~   87 (136)
T 2l5l_A            9 GKVIHL-TKAEFLAKVYNFEKNPEEWKYEGDKPAIVDFYADWCGPCKMVAPILDELAKEYDGQIVIYKVDTEKEQELAGA   87 (136)
T ss_dssp             TSEEEE-CHHHHHHHTBCTTTCSSSCCBCCSSCEEEEEECTTSHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHH
T ss_pred             CceEEe-cchHHHHHHHhhccCccceeecCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhcCCEEEEEEeCCCCHHHHHH
Confidence            345555 5677777664321        146899999999999999999999999999997 599999999999999999


Q ss_pred             CCCcceeEEEEE-eCCeEEEEEeCC-ChHHHHHHHHHHhhccCCCC
Q 032502           95 WDIKATPTFFFL-KDGQQVDKLVGA-NKPELQKKVAAAVDSVVPSQ  138 (139)
Q Consensus        95 ~~v~~~Pt~~~~-~~g~~~~~~~g~-~~~~l~~~i~~~~~~~~~~~  138 (139)
                      |+|.++||++++ ++|+++ .+.|. +.++|.++|++++....+.+
T Consensus        88 ~~v~~~Pt~~~~~~~G~~~-~~~G~~~~~~l~~~l~~~~~~~~~~~  132 (136)
T 2l5l_A           88 FGIRSIPSILFIPMEGKPE-MAQGAMPKASFKKAIDEFLLKKEGHH  132 (136)
T ss_dssp             TTCCSSCEEEEECSSSCCE-EEESCCCHHHHHHHHHHHHTSCTTSS
T ss_pred             cCCCCCCEEEEECCCCcEE-EEeCCCCHHHHHHHHHHHhhccCCCC
Confidence            999999999999 899988 66777 99999999999988766543

>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti}

Probab=99.90  E-value=1.2e-22  Score=121.71  Aligned_cols=97  Identities=32%  Similarity=0.710  Sum_probs=87.4

Q ss_pred             chhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCC-CcEEEEEeCCcchhhhhhCCCcceeEEEEEeCC
Q 032502           31 TKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP-SLMFLLVDVDELVEFSTSWDIKATPTFFFLKDG  109 (139)
Q Consensus        31 ~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~-~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g  109 (139)
                      +.++|...+.   .++++++|+||++||++|+.+.+.++++++.++ ++.|+.+|++.++.++++|++.++||++++++|
T Consensus         8 ~~~~~~~~~~---~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~G   84 (107)
T 2i4a_A            8 SDSSFDQDVL---KASGLVLVDFWAEWCGPCKMIGPALGEIGKEFAGKVTVAKVNIDDNPETPNAYQVRSIPTLMLVRDG   84 (107)
T ss_dssp             CTTTHHHHTT---TCSSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTSEEEEEEETTTCCHHHHHTTCCSSSEEEEEETT
T ss_pred             chhhhhHHHH---hCCCEEEEEEECCCChhHHHHhHHHHHHHHHhCCcEEEEEEECCCCHHHHHhcCCCccCEEEEEeCC
Confidence            4566665552   468999999999999999999999999999987 599999999999999999999999999999999


Q ss_pred             eEEEEEeCC-ChHHHHHHHHHH
Q 032502          110 QQVDKLVGA-NKPELQKKVAAA  130 (139)
Q Consensus       110 ~~~~~~~g~-~~~~l~~~i~~~  130 (139)
                      +++.++.|. +.+.|.++|+++
T Consensus        85 ~~~~~~~G~~~~~~l~~~l~~~  106 (107)
T 2i4a_A           85 KVIDKKVGALPKSQLKAWVESA  106 (107)
T ss_dssp             EEEEEEESCCCHHHHHHHHHHT
T ss_pred             EEEEEecCCCCHHHHHHHHHhc
Confidence            999999998 899999998875

>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.90  E-value=8.3e-23  Score=127.03  Aligned_cols=107  Identities=18%  Similarity=0.412  Sum_probs=93.1

Q ss_pred             eEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCC-----CcEEEEEeCCcchhhhhhCCCcce
Q 032502           26 VSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP-----SLMFLLVDVDELVEFSTSWDIKAT  100 (139)
Q Consensus        26 ~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~-----~v~~~~vd~~~~~~~~~~~~v~~~  100 (139)
                      +..+ +.++|...+.   .+++++||+||++||++|+.+.|.+.++++.+.     ++.|+.+|++.++.++++|+|.++
T Consensus         9 v~~l-~~~~~~~~~~---~~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~   84 (133)
T 1x5d_A            9 VIEL-TDDSFDKNVL---DSEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDATVNQVLASRYGIRGF   84 (133)
T ss_dssp             CEEC-CTTHHHHHTT---TSSSEEEEEEECTTCHHHHTHHHHHHHHHHHHHHHTTTSEEEEEEETTTCCHHHHHHTCCSS
T ss_pred             CEEc-CHhhHHHHHh---cCCCeEEEEEECCCCHHHHhhcHHHHHHHHHHHhhcCCcEEEEEEECCCCHHHHHhCCCCee
Confidence            4444 4566766553   457899999999999999999999999998874     599999999999999999999999


Q ss_pred             eEEEEEeCCeEEEEEeCC-ChHHHHHHHHHHhhccCC
Q 032502          101 PTFFFLKDGQQVDKLVGA-NKPELQKKVAAAVDSVVP  136 (139)
Q Consensus       101 Pt~~~~~~g~~~~~~~g~-~~~~l~~~i~~~~~~~~~  136 (139)
                      ||++++.+|+.+.++.|. +.++|.++|.+++.....
T Consensus        85 Pt~~~~~~g~~~~~~~G~~~~~~l~~~l~~~~~~~~~  121 (133)
T 1x5d_A           85 PTIKIFQKGESPVDYDGGRTRSDIVSRALDLFSDNAP  121 (133)
T ss_dssp             SEEEEEETTEEEEEECSCCSHHHHHHHHHHHHHHHSC
T ss_pred             CeEEEEeCCCceEEecCCCCHHHHHHHHHHHhhccCC
Confidence            999999999999999998 999999999999876543

>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens}

Probab=99.90  E-value=8.3e-23  Score=126.19  Aligned_cols=95  Identities=18%  Similarity=0.247  Sum_probs=87.8

Q ss_pred             hCCCEEEEEEeCCCChhhhhhhHhHHHHHHhC-CCcEEEEEe--CCcchhhhhhCCCcceeEEEEEe-CCeEEEEEeCC-
Q 032502           44 KEGKIVIANFSATWCGPCRMIAPFFSELSEKY-PSLMFLLVD--VDELVEFSTSWDIKATPTFFFLK-DGQQVDKLVGA-  118 (139)
Q Consensus        44 ~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~-~~v~~~~vd--~~~~~~~~~~~~v~~~Pt~~~~~-~g~~~~~~~g~-  118 (139)
                      .++++++|+||++||++|+.+.|.+.++++.+ +++.|+.+|  ++++.+++++|+|.++||++++. +|+++.++.|. 
T Consensus        24 ~~~k~~lv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~v~~~~d~~~~~~~~~~v~~~Pt~~~~~~~G~~~~~~~G~~  103 (126)
T 2l57_A           24 KEGIPTIIMFKTDTCPYCVEMQKELSYVSKEREGKFNIYYARLEEEKNIDLAYKYDANIVPTTVFLDKEGNKFYVHQGLM  103 (126)
T ss_dssp             CSSSCEEEEEECSSCHHHHHHHHHHHHHHHHSSSSCEEEEEETTSSHHHHHHHHTTCCSSSEEEEECTTCCEEEEEESCC
T ss_pred             hCCCcEEEEEECCCCccHHHHHHHHHHHHHHhcCCeEEEEEeCCCCchHHHHHHcCCcceeEEEEECCCCCEEEEecCCC
Confidence            56899999999999999999999999999999 479999999  99999999999999999999996 99999999998 


Q ss_pred             ChHHHHHHHHHHhhccCCCC
Q 032502          119 NKPELQKKVAAAVDSVVPSQ  138 (139)
Q Consensus       119 ~~~~l~~~i~~~~~~~~~~~  138 (139)
                      +.++|.++|++++...++.+
T Consensus       104 ~~~~l~~~l~~~~~~~~~~~  123 (126)
T 2l57_A          104 RKNNIETILNSLGVKEGHHH  123 (126)
T ss_dssp             CHHHHHHHHHHHCCCCCCCC
T ss_pred             CHHHHHHHHHHHhccccccc
Confidence            99999999999988776654

>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix}

Probab=99.90  E-value=6.4e-23  Score=128.38  Aligned_cols=106  Identities=22%  Similarity=0.246  Sum_probs=90.5

Q ss_pred             CCceEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeC---------Ccchhhhh
Q 032502           23 GGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDV---------DELVEFST   93 (139)
Q Consensus        23 ~~~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~---------~~~~~~~~   93 (139)
                      .+.+..+ +.++|+..+.     + +++|+||++||++|+.+.|.+.+++++++ +.|+.+|+         ++++.+++
T Consensus        15 ~~~v~~l-~~~~~~~~~~-----~-~vlv~F~a~wC~~C~~~~p~l~~l~~~~~-v~~~~vd~~~~~~~~~~d~~~~l~~   86 (135)
T 3emx_A           15 DGRLIYI-TPEEFRQLLQ-----G-DAILAVYSKTCPHCHRDWPQLIQASKEVD-VPIVMFIWGSLIGERELSAARLEMN   86 (135)
T ss_dssp             TTEEEEC-CHHHHHHHHT-----S-SEEEEEEETTCHHHHHHHHHHHHHHTTCC-SCEEEEEECTTCCHHHHHHHHHHHH
T ss_pred             cCceeec-CHHHHHHHhC-----C-cEEEEEECCcCHhhhHhChhHHHHHHHCC-CEEEEEECCCchhhhhhhhhHHHHH
Confidence            4455565 6677877663     2 99999999999999999999999999997 99999999         88899999


Q ss_pred             hCCCcceeEEEEEeCCeEEEEEeCC-ChHHHHHHHHHHhhccCC
Q 032502           94 SWDIKATPTFFFLKDGQQVDKLVGA-NKPELQKKVAAAVDSVVP  136 (139)
Q Consensus        94 ~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~i~~~~~~~~~  136 (139)
                      +|+|.++||++++++|+++.++.|. +.+.+.++++++++...+
T Consensus        87 ~~~v~~~Pt~~~~~~G~~v~~~~G~~~~~~~~~~i~~~~~~~~~  130 (135)
T 3emx_A           87 KAGVEGTPTLVFYKEGRIVDKLVGATPWSLKVEKAREIYGGEGH  130 (135)
T ss_dssp             HHTCCSSSEEEEEETTEEEEEEESCCCHHHHHHHHHHHC-----
T ss_pred             HcCCceeCeEEEEcCCEEEEEEeCCCCHHHHHHHHHHHhCCCcc
Confidence            9999999999999999999999999 889999999998876543

>2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.90  E-value=1.5e-22  Score=126.76  Aligned_cols=105  Identities=20%  Similarity=0.341  Sum_probs=90.6

Q ss_pred             cCCCceEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhhhhhCCCcce
Q 032502           21 FAGGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKAT  100 (139)
Q Consensus        21 ~~~~~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~  100 (139)
                      ...+.+..+ +.++|.+.+... .+++++||+||++||++|+.+.|.|.+++++++++.|+.+|+++..   ++|+|.++
T Consensus         7 ~~~g~v~~i-~~~~~~~~v~~~-~~~~~vvv~f~a~wC~~C~~~~p~l~~la~~~~~v~~~~vd~~~~~---~~~~i~~~   81 (135)
T 2dbc_A            7 GKFGELREI-SGNQYVNEVTNA-EKDLWVVIHLYRSSVPMCLVVNQHLSVLARKFPETKFVKAIVNSCI---EHYHDNCL   81 (135)
T ss_dssp             CCCCSCEEC-CHHHHHHHTTTC-CSSCEEEEEECCTTCHHHHHHHHHHHHHHHHCSSEEEEEECCSSSC---SSCCSSCC
T ss_pred             CCCCceEEc-CHHHHHHHHHhc-CCCCEEEEEEECCCChHHHHHHHHHHHHHHHCCCcEEEEEEhhcCc---ccCCCCCC
Confidence            334567788 788888877533 2457999999999999999999999999999999999999999875   78999999


Q ss_pred             eEEEEEeCCeEEEEEeCC--------ChHHHHHHHHHH
Q 032502          101 PTFFFLKDGQQVDKLVGA--------NKPELQKKVAAA  130 (139)
Q Consensus       101 Pt~~~~~~g~~~~~~~g~--------~~~~l~~~i~~~  130 (139)
                      ||+++|++|+++.++.|.        +.++|.++|.+.
T Consensus        82 Pt~~~~~~G~~v~~~~G~~~~~~~~~~~~~l~~~l~~~  119 (135)
T 2dbc_A           82 PTIFVYKNGQIEGKFIGIIECGGINLKLEELEWKLSEV  119 (135)
T ss_dssp             SEEEEESSSSCSEEEESTTTTTCTTCCHHHHHHHHHHH
T ss_pred             CEEEEEECCEEEEEEEeEEeeCCCcCCHHHHHHHHHHc
Confidence            999999999999999887        477888888876

>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A 3uj1_A

Probab=99.89  E-value=2.6e-22  Score=121.02  Aligned_cols=100  Identities=25%  Similarity=0.523  Sum_probs=89.2

Q ss_pred             ceEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCC----CcEEEEEeCCcchhhhhhCCCcce
Q 032502           25 NVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP----SLMFLLVDVDELVEFSTSWDIKAT  100 (139)
Q Consensus        25 ~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~----~v~~~~vd~~~~~~~~~~~~v~~~  100 (139)
                      .+..+ +.++|++.+.     +++++|+||++||++|+.+.|.+.++++.+.    ++.++.+|++++++++++|+|.++
T Consensus         6 ~v~~l-~~~~~~~~~~-----~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~   79 (111)
T 3uvt_A            6 TVLAL-TENNFDDTIA-----EGITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAERNICSKYSVRGY   79 (111)
T ss_dssp             CSEEC-CTTTHHHHHH-----SSEEEEEEECSSCHHHHHHHHHHHHHHTCCCCC-CCEEEEEEETTTCHHHHHHTTCCSS
T ss_pred             cceEc-ChhhHHHHhc-----CCcEEEEEECCCChhHHHhhHHHHHHHHHhhccCCceEEEEEeccccHhHHHhcCCCcc
Confidence            34444 6677777773     7899999999999999999999999999874    699999999999999999999999


Q ss_pred             eEEEEEeCCeEEEEEeCC-ChHHHHHHHHHH
Q 032502          101 PTFFFLKDGQQVDKLVGA-NKPELQKKVAAA  130 (139)
Q Consensus       101 Pt~~~~~~g~~~~~~~g~-~~~~l~~~i~~~  130 (139)
                      ||++++++|+.+.++.|. +.+.|.++|.+.
T Consensus        80 Pt~~~~~~g~~~~~~~g~~~~~~l~~~l~~~  110 (111)
T 3uvt_A           80 PTLLLFRGGKKVSEHSGGRDLDSLHRFVLSQ  110 (111)
T ss_dssp             SEEEEEETTEEEEEECSCCSHHHHHHHHHHH
T ss_pred             cEEEEEeCCcEEEeccCCcCHHHHHHHHHhc
Confidence            999999999999999998 999999998764

>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}

Probab=99.89  E-value=2.4e-22  Score=135.47  Aligned_cols=104  Identities=29%  Similarity=0.617  Sum_probs=94.2

Q ss_pred             eechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCC-cEEEEEeCCcchhhhhhCCCcceeEEEEEe
Q 032502           29 VTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVDELVEFSTSWDIKATPTFFFLK  107 (139)
Q Consensus        29 i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~-v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~  107 (139)
                      ..+.++|+..+.   .++++++|+||++||++|+.+.|.++++++.+++ +.|+.+|++.++.++++|+|.++||+++++
T Consensus        16 ~lt~~~f~~~v~---~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~   92 (222)
T 3dxb_A           16 HLTDDSFDTDVL---KADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFK   92 (222)
T ss_dssp             ECCTTTHHHHHT---TCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCTTTGGGGTCCSBSEEEEEE
T ss_pred             eCCHHHHHHHHH---hcCCEEEEEEECCcCHHHHHHHHHHHHHHHHhcCCcEEEEEECCCCHHHHHHcCCCcCCEEEEEE
Confidence            346777877653   4689999999999999999999999999999986 999999999999999999999999999999


Q ss_pred             CCeEEEEEeCC-ChHHHHHHHHHHhhccC
Q 032502          108 DGQQVDKLVGA-NKPELQKKVAAAVDSVV  135 (139)
Q Consensus       108 ~g~~~~~~~g~-~~~~l~~~i~~~~~~~~  135 (139)
                      +|+++.++.|. +.+.|.++|.+++....
T Consensus        93 ~G~~~~~~~G~~~~~~l~~~l~~~l~~~~  121 (222)
T 3dxb_A           93 NGEVAATKVGALSKGQLKEFLDANLAGSA  121 (222)
T ss_dssp             TTEEEEEEESCCCHHHHHHHHHHHSCCSC
T ss_pred             CCeEEEEeccccChHHHHHHHHhhccccc
Confidence            99999999999 99999999999986543

>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.89  E-value=1.6e-22  Score=125.39  Aligned_cols=109  Identities=15%  Similarity=0.336  Sum_probs=92.8

Q ss_pred             CceEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCC-cEEEEEeCCcchhhhhhCCCcceeE
Q 032502           24 GNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVDELVEFSTSWDIKATPT  102 (139)
Q Consensus        24 ~~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~-v~~~~vd~~~~~~~~~~~~v~~~Pt  102 (139)
                      ..+..+ +.++|+..+.   .++++++|+||++||++|+.+.|.++++++.+++ +.|+.+|++++..++++|+|.++||
T Consensus        17 ~~v~~l-~~~~f~~~~~---~~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pt   92 (130)
T 2dml_A           17 DDVIEL-TPSNFNREVI---QSDGLWLVEFYAPWCGHCQRLTPEWKKAATALKDVVKVGAVNADKHQSLGGQYGVQGFPT   92 (130)
T ss_dssp             SSSEEC-CTTTHHHHTT---TCSSCEEEEEECTTCSTTGGGHHHHHHHHHHTTTTSEEEEEETTTCHHHHHHHTCCSSSE
T ss_pred             CCcEEC-CHHHHHHHHh---cCCCeEEEEEECCCCHHHHhhCHHHHHHHHHhcCceEEEEEeCCCCHHHHHHcCCCccCE
Confidence            345555 4567776553   4588999999999999999999999999999986 9999999999999999999999999


Q ss_pred             EEEEeCCeE-EEEEeCC-ChHHHHHHHHHHhhccCC
Q 032502          103 FFFLKDGQQ-VDKLVGA-NKPELQKKVAAAVDSVVP  136 (139)
Q Consensus       103 ~~~~~~g~~-~~~~~g~-~~~~l~~~i~~~~~~~~~  136 (139)
                      ++++.+|+. +.++.|. +.++|.++|.+.+...+.
T Consensus        93 ~~~~~~~~~~~~~~~G~~~~~~l~~~l~~~l~~~~~  128 (130)
T 2dml_A           93 IKIFGANKNKPEDYQGGRTGEAIVDAALSALRSGPS  128 (130)
T ss_dssp             EEEESSCTTSCEECCSCCSHHHHHHHHHHHHHHSSC
T ss_pred             EEEEeCCCCeEEEeecCCCHHHHHHHHHHHHhcCCC
Confidence            999966554 7788888 899999999998876543

>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A

Probab=99.89  E-value=1.1e-22  Score=124.50  Aligned_cols=105  Identities=32%  Similarity=0.620  Sum_probs=90.5

Q ss_pred             ceEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCC-CcEEEEEeCCcchhhhhhCCCcceeEE
Q 032502           25 NVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP-SLMFLLVDVDELVEFSTSWDIKATPTF  103 (139)
Q Consensus        25 ~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~-~v~~~~vd~~~~~~~~~~~~v~~~Pt~  103 (139)
                      .+..+ +.+++...+.   .++++++|+||++||++|+.+.+.++++++.++ ++.|+.+|+++++.++++|+|.++||+
T Consensus        13 ~v~~l-~~~~~~~~~~---~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~   88 (121)
T 2i1u_A           13 ATIKV-TDASFATDVL---SSNKPVLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDVDTNPETARNFQVVSIPTL   88 (121)
T ss_dssp             CSEEC-CTTTHHHHTT---TCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCSSSEE
T ss_pred             cceec-CHHHHHHHHH---hCCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCCHHHHHhcCCCcCCEE
Confidence            44554 4455655443   458899999999999999999999999999996 599999999999999999999999999


Q ss_pred             EEEeCCeEEEEEeCC-ChHHHHHHHHHHhhc
Q 032502          104 FFLKDGQQVDKLVGA-NKPELQKKVAAAVDS  133 (139)
Q Consensus       104 ~~~~~g~~~~~~~g~-~~~~l~~~i~~~~~~  133 (139)
                      +++++|+++.++.|. +.+.|.++|.+++..
T Consensus        89 ~~~~~g~~~~~~~G~~~~~~l~~~l~~~l~~  119 (121)
T 2i1u_A           89 ILFKDGQPVKRIVGAKGKAALLRELSDVVPN  119 (121)
T ss_dssp             EEEETTEEEEEEESCCCHHHHHHHTCSCCCC
T ss_pred             EEEECCEEEEEecCCCCHHHHHHHHHHHHhh
Confidence            999999999999998 888899988877654

>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum}

Probab=99.89  E-value=9.2e-23  Score=126.48  Aligned_cols=89  Identities=20%  Similarity=0.431  Sum_probs=82.1

Q ss_pred             HHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCC-CcEEEEEeCCcchhhhhhCCCcceeEEEEEeCCeEEEEEeCC-
Q 032502           41 EASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP-SLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGA-  118 (139)
Q Consensus        41 ~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~-~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-  118 (139)
                      ....++++++|+||++||++|+.+.|.+++++++++ ++.++.+|+++++.++++|+|.++||++++++|+++.++.|. 
T Consensus        37 ~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~~~~G~~  116 (128)
T 3ul3_B           37 GVNMKNTVIVLYFFAKWCQACTMQSTEMDKLQKYYGKRIYLLKVDLDKNESLARKFSVKSLPTIILLKNKTMLARKDHFV  116 (128)
T ss_dssp             BTTSCCSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGEEEEEEEGGGCHHHHHHTTCCSSSEEEEEETTEEEEEESSCC
T ss_pred             HHHccCCEEEEEEECCCCHHHHHHhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCCCcCEEEEEECCEEEEEecCCC
Confidence            334678999999999999999999999999999987 599999999999999999999999999999999999999998 


Q ss_pred             ChHHHHHHHHH
Q 032502          119 NKPELQKKVAA  129 (139)
Q Consensus       119 ~~~~l~~~i~~  129 (139)
                      +.++|.++|++
T Consensus       117 ~~~~l~~~l~~  127 (128)
T 3ul3_B          117 SSNDLIALIKK  127 (128)
T ss_dssp             CHHHHHHHHTT
T ss_pred             CHHHHHHHHHh
Confidence            99999988764

>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa}

Probab=99.89  E-value=1.3e-22  Score=126.37  Aligned_cols=102  Identities=17%  Similarity=0.303  Sum_probs=92.0

Q ss_pred             echhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHH--HHHHhCC-CcEEEEEeC---CcchhhhhhCCC---cce
Q 032502           30 TTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFS--ELSEKYP-SLMFLLVDV---DELVEFSTSWDI---KAT  100 (139)
Q Consensus        30 ~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~--~~~~~~~-~v~~~~vd~---~~~~~~~~~~~v---~~~  100 (139)
                      .+..++++.+..+..++++++|+||++||++|+.+.|.|.  ++.+.+. ++.++.+|+   +.+..++++|+|   .++
T Consensus        13 ~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~l~~~~~~~~~~~~~~~~~vd~~~~~~~~~l~~~~~v~~~~~~   92 (133)
T 3fk8_A           13 DAWTQVKKALAAGKRTHKPTLLVFGANWCTDCRALDKSLRNQKNTALIAKHFEVVKIDVGNFDRNLELSQAYGDPIQDGI   92 (133)
T ss_dssp             CHHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHTSHHHHHHHHHHCEEEEEECTTTTSSHHHHHHTTCGGGGCS
T ss_pred             ChHhHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHhCCHHHHHHhcCCEEEEEEeCCcccchHHHHHHhCCccCCcc
Confidence            4567788888877788999999999999999999999999  9988884 699999999   899999999999   999


Q ss_pred             eEEEEE-eCCeEEEEEeC-------C-ChHHHHHHHHHHh
Q 032502          101 PTFFFL-KDGQQVDKLVG-------A-NKPELQKKVAAAV  131 (139)
Q Consensus       101 Pt~~~~-~~g~~~~~~~g-------~-~~~~l~~~i~~~~  131 (139)
                      ||++++ ++|+++.+..|       . +.+++.++|+++.
T Consensus        93 Pt~~~~d~~G~~~~~~~g~~~~~~~~~~~~~l~~~l~~l~  132 (133)
T 3fk8_A           93 PAVVVVNSDGKVRYTTKGGELANARKMSDQGIYDFFAKIT  132 (133)
T ss_dssp             SEEEEECTTSCEEEECCSCTTTTGGGSCHHHHHHHHHHHH
T ss_pred             ceEEEECCCCCEEEEecCCcccccccCCHHHHHHHHHHhc
Confidence            999999 99999999888       5 8889999988764

>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} SCOP: c.47.1.0

Probab=99.89  E-value=3e-22  Score=123.92  Aligned_cols=102  Identities=13%  Similarity=0.153  Sum_probs=85.8

Q ss_pred             ceEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhC------CCcEEEEEeCCcchhhhhhCCCc
Q 032502           25 NVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKY------PSLMFLLVDVDELVEFSTSWDIK   98 (139)
Q Consensus        25 ~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~------~~v~~~~vd~~~~~~~~~~~~v~   98 (139)
                      .+..+ +.++|+..+.   .++++++|.||++||++|+.+.|.+.++++.+      +++.|+.+|++++++++++|+|.
T Consensus        16 ~v~~l-~~~~f~~~~~---~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~   91 (127)
T 3h79_A           16 RVVEL-TDETFDSIVM---DPEKDVFVLYYVPWSRHSVAAMRLWDDLSMSQSQKRNHLTFVAARIDGEKYPDVIERMRVS   91 (127)
T ss_dssp             CCEEC-CTTTHHHHHT---CTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHHTSTTTTTEEEEEEETTTCHHHHHHTTCC
T ss_pred             ceEEC-ChhhHHHHHh---CCCCCEEEEEECCccHHHHHHhHHHHHHHHHHHhcccCCCeEEEEEEccccHhHHHhcCCc
Confidence            44444 6677777663   35899999999999999999999999998754      35999999999999999999999


Q ss_pred             ceeEEEEEeCCeEE--EEEeCC-ChHHHHHHHHHH
Q 032502           99 ATPTFFFLKDGQQV--DKLVGA-NKPELQKKVAAA  130 (139)
Q Consensus        99 ~~Pt~~~~~~g~~~--~~~~g~-~~~~l~~~i~~~  130 (139)
                      ++||+++|++|+..  ..+.|. +.+.|.++|.++
T Consensus        92 ~~Pt~~~~~~g~~~~~~~~~G~~~~~~l~~~i~~~  126 (127)
T 3h79_A           92 GFPTMRYYTRIDKQEPFEYSGQRYLSLVDSFVFQN  126 (127)
T ss_dssp             SSSEEEEECSSCSSSCEECCSCCCHHHHHHHHHHH
T ss_pred             cCCEEEEEeCCCCCCceEecCCccHHHHHHHHHhc
Confidence            99999999777653  467787 999999999875

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.88  E-value=4.9e-22  Score=138.26  Aligned_cols=105  Identities=17%  Similarity=0.371  Sum_probs=92.6

Q ss_pred             CceEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCC-cEEEEEeCCcchhhhhhCCCcceeE
Q 032502           24 GNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVDELVEFSTSWDIKATPT  102 (139)
Q Consensus        24 ~~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~-v~~~~vd~~~~~~~~~~~~v~~~Pt  102 (139)
                      ..+..+ +.++|+..+.  ..++++|+|+||++||++|+.+.|.+.++++++++ +.|+.||+++++.++++|+|.++||
T Consensus         7 ~~v~~~-~~~~f~~~~~--~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt   83 (287)
T 3qou_A            7 ENIVNI-NESNLQQVLE--QSMTTPVLFYFWSERSQHCLQLTPILESLAAQYNGQFILAKLDCDAEQMIAAQFGLRAIPT   83 (287)
T ss_dssp             TTEEEC-CTTTHHHHHT--TTTTSCEEEEEECTTCTTTTTTHHHHHHHHHHHTSSSEEEEEETTTCHHHHHTTTCCSSSE
T ss_pred             CccEEC-CHHHHHHHHH--hcCCCeEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEEeCccCHHHHHHcCCCCCCe
Confidence            345555 5577877553  23489999999999999999999999999999986 9999999999999999999999999


Q ss_pred             EEEEeCCeEEEEEeCC-ChHHHHHHHHHHh
Q 032502          103 FFFLKDGQQVDKLVGA-NKPELQKKVAAAV  131 (139)
Q Consensus       103 ~~~~~~g~~~~~~~g~-~~~~l~~~i~~~~  131 (139)
                      +++|++|+++.++.|. +.+.+..+|...+
T Consensus        84 ~~~~~~G~~~~~~~g~~~~~~l~~~l~~~l  113 (287)
T 3qou_A           84 VYLFQNGQPVDGFQGPQPEEAIRALLDXVL  113 (287)
T ss_dssp             EEEEETTEEEEEEESCCCHHHHHHHHHHHS
T ss_pred             EEEEECCEEEEEeeCCCCHHHHHHHHHHHc
Confidence            9999999999999998 8889999988765

>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus}

Probab=99.88  E-value=1.5e-22  Score=124.30  Aligned_cols=107  Identities=18%  Similarity=0.302  Sum_probs=87.8

Q ss_pred             eEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCC-CcEEEEEeCCcchhhhhhCCCcceeEEE
Q 032502           26 VSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP-SLMFLLVDVDELVEFSTSWDIKATPTFF  104 (139)
Q Consensus        26 ~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~-~v~~~~vd~~~~~~~~~~~~v~~~Pt~~  104 (139)
                      +..+ +.++|...+.   .++++++|+||++||++|+.+.|.+.++++.++ ++.|+.+|++++++++++|+|.++||++
T Consensus         5 v~~l-~~~~f~~~~~---~~~~~~lv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~   80 (122)
T 3aps_A            5 SIDL-TPQTFNEKVL---QGKTHWVVDFYAPWCGPCQNFAPEFELLARMIKGKVRAGKVDCQAYPQTCQKAGIKAYPSVK   80 (122)
T ss_dssp             SEEC-CHHHHHHHTT---TCSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTCEEEEEETTTCHHHHHHTTCCSSSEEE
T ss_pred             hhcC-CHHHHHHHHh---cCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCcCCHHHHHHcCCCccceEE
Confidence            3444 4566654442   468899999999999999999999999999987 6999999999999999999999999999


Q ss_pred             EEeCCeEEEEEeC-----CChHHHHHHHHHHhhccCC
Q 032502          105 FLKDGQQVDKLVG-----ANKPELQKKVAAAVDSVVP  136 (139)
Q Consensus       105 ~~~~g~~~~~~~g-----~~~~~l~~~i~~~~~~~~~  136 (139)
                      ++.+|..+.++.|     .+.++|.++|.++++....
T Consensus        81 ~~~~~~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~~  117 (122)
T 3aps_A           81 LYQYERAKKSIWEEQINSRDAKTIAALIYGKLETLQS  117 (122)
T ss_dssp             EEEEEGGGTEEEEEEECCSCHHHHHHHHHHHHHCC--
T ss_pred             EEeCCCccceeeccccCcCCHHHHHHHHHHHHHhhhh
Confidence            9965554555555     3899999999999887654

>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus}

Probab=99.88  E-value=1.5e-21  Score=122.63  Aligned_cols=103  Identities=25%  Similarity=0.562  Sum_probs=81.9

Q ss_pred             ceEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCC-CcEEEEEeCCcchhhhhhCCCcceeEE
Q 032502           25 NVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP-SLMFLLVDVDELVEFSTSWDIKATPTF  103 (139)
Q Consensus        25 ~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~-~v~~~~vd~~~~~~~~~~~~v~~~Pt~  103 (139)
                      .+..+ +.++|...+.   ..++ ++|+||++||++|+.+.|.+++++++++ ++.|+.+|++.+..++++|+|.++||+
T Consensus        34 ~v~~l-~~~~~~~~~~---~~~~-vvv~f~~~~C~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~  108 (140)
T 1v98_A           34 WVVEA-DEKGFAQEVA---GAPL-TLVDFFAPWCGPCRLVSPILEELARDHAGRLKVVKVNVDEHPGLAARYGVRSVPTL  108 (140)
T ss_dssp             -------------------CCCE-EEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCHHHHHHTTCCSSSEE
T ss_pred             ccccC-CHHHHHHHHH---cCCC-EEEEEECCCCHHHHHHHHHHHHHHHHccCceEEEEEECCCCHHHHHHCCCCccCEE
Confidence            33443 4555655553   2344 9999999999999999999999999998 599999999999999999999999999


Q ss_pred             EEEeCCeEEEEEeCC-ChHHHHHHHHHHhh
Q 032502          104 FFLKDGQQVDKLVGA-NKPELQKKVAAAVD  132 (139)
Q Consensus       104 ~~~~~g~~~~~~~g~-~~~~l~~~i~~~~~  132 (139)
                      +++++|+++.++.|. +.+.|.++|.++++
T Consensus       109 ~~~~~G~~~~~~~G~~~~~~l~~~i~~~l~  138 (140)
T 1v98_A          109 VLFRRGAPVATWVGASPRRVLEERLRPYLE  138 (140)
T ss_dssp             EEEETTEEEEEEESCCCHHHHHHHHHHHHT
T ss_pred             EEEeCCcEEEEEeCCCCHHHHHHHHHHHHc
Confidence            999999999999998 89999999999875

>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.88  E-value=1.2e-21  Score=120.89  Aligned_cols=102  Identities=25%  Similarity=0.448  Sum_probs=87.5

Q ss_pred             CceEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCC--CcEEEEEeCCcchhhhhhCCCccee
Q 032502           24 GNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP--SLMFLLVDVDELVEFSTSWDIKATP  101 (139)
Q Consensus        24 ~~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~~~~~~~~~~v~~~P  101 (139)
                      +.+..+ +.++|++.+      ++.++|+||++||++|+.+.|.+.++++.++  ++.|+.+|++++..++++|+|.++|
T Consensus         7 ~~v~~l-~~~~f~~~~------~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P   79 (126)
T 1x5e_A            7 GNVRVI-TDENWRELL------EGDWMIEFYAPWCPACQNLQPEWESFAEWGEDLEVNIAKVDVTEQPGLSGRFIINALP   79 (126)
T ss_dssp             CSEEEC-CTTTHHHHT------SSEEEEEEECSSCHHHHHHHHHHHHHHHHHGGGTCEEEEEETTTCHHHHHHTTCCSSS
T ss_pred             CccEEe-cHHHHHHHh------CCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECcCCHHHHHHcCCcccC
Confidence            345555 567777554      2359999999999999999999999999886  5999999999999999999999999


Q ss_pred             EEEEEeCCeEEEEEeCC-ChHHHHHHHHHHhhc
Q 032502          102 TFFFLKDGQQVDKLVGA-NKPELQKKVAAAVDS  133 (139)
Q Consensus       102 t~~~~~~g~~~~~~~g~-~~~~l~~~i~~~~~~  133 (139)
                      |++++++|++ .++.|. +.++|.++|.+++..
T Consensus        80 t~~~~~~G~~-~~~~G~~~~~~l~~~l~~~~~~  111 (126)
T 1x5e_A           80 TIYHCKDGEF-RRYQGPRTKKDFINFISDKEWK  111 (126)
T ss_dssp             EEEEEETTEE-EECCSCCCHHHHHHHHHTCGGG
T ss_pred             EEEEEeCCeE-EEeecCCCHHHHHHHHHHHhhc
Confidence            9999999995 677888 899999999988754

>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A

Probab=99.88  E-value=3.2e-22  Score=124.98  Aligned_cols=105  Identities=21%  Similarity=0.438  Sum_probs=89.9

Q ss_pred             ceEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhH---HHHHHhCCCcEEEEEeC----CcchhhhhhCCC
Q 032502           25 NVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFF---SELSEKYPSLMFLLVDV----DELVEFSTSWDI   97 (139)
Q Consensus        25 ~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l---~~~~~~~~~v~~~~vd~----~~~~~~~~~~~v   97 (139)
                      .+..+.+.+++...+...  +++++||+||++||++|+.+.+.+   .++++.++++.++.+|+    +.+..++++|+|
T Consensus        12 ~f~~~~~~~~~~~~l~~~--~~k~vlv~F~a~wC~~C~~~~~~~~~~~~l~~~~~~~~~~~vd~~~~~~~~~~l~~~~~v   89 (134)
T 2fwh_A           12 NFTQIKTVDELNQALVEA--KGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALADTVLLQANVTANDAQDVALLKHLNV   89 (134)
T ss_dssp             CCEECCSHHHHHHHHHHH--TTSCEEEEEECTTCHHHHHHHHHTTTSHHHHHHTTTSEEEEEECTTCCHHHHHHHHHTTC
T ss_pred             CcEEecCHHHHHHHHHHh--cCCcEEEEEECCCCHHHHHHHHHhcCCHHHHHHhcCcEEEEEeCCCCcchHHHHHHHcCC
Confidence            344566777777766533  489999999999999999999999   99999998999999999    567889999999


Q ss_pred             cceeEEEEE-eCCeEE--EEEeCC-ChHHHHHHHHHHh
Q 032502           98 KATPTFFFL-KDGQQV--DKLVGA-NKPELQKKVAAAV  131 (139)
Q Consensus        98 ~~~Pt~~~~-~~g~~~--~~~~g~-~~~~l~~~i~~~~  131 (139)
                      .++||++++ ++|+++  .++.|. +.++|.++|+++-
T Consensus        90 ~~~Pt~~~~d~~G~~v~~~~~~G~~~~~~l~~~l~~~~  127 (134)
T 2fwh_A           90 LGLPTILFFDGQGQEHPQARVTGFMDAETFSAHLRDRQ  127 (134)
T ss_dssp             CSSSEEEEECTTSCBCGGGCBCSCCCHHHHHHHHHHC-
T ss_pred             CCCCEEEEECCCCCEeeeeeeeeccCHHHHHHHHHhcC
Confidence            999999999 999998  688898 8999999887763

>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6

Probab=99.87  E-value=5.2e-22  Score=133.44  Aligned_cols=106  Identities=12%  Similarity=0.257  Sum_probs=93.2

Q ss_pred             CCceEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhhhhhCCCcceeE
Q 032502           23 GGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPT  102 (139)
Q Consensus        23 ~~~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt  102 (139)
                      .+.+..+.+.++|...+... .++++|||+||++||++|+.+.|.|.+++.+|+++.|+.||++ ++.++.+|+|.++||
T Consensus        98 ~g~v~~i~~~~~f~~~v~~~-~~~k~vvV~F~a~wC~~C~~l~p~l~~la~~~~~v~f~~vd~~-~~~l~~~~~i~~~PT  175 (217)
T 2trc_P           98 YGFVYELETGEQFLETIEKE-QKVTTIVVNIYEDGVRGCDALNSSLECLAAEYPMVKFCKIRAS-NTGAGDRFSSDVLPT  175 (217)
T ss_dssp             CCSEEECCSHHHHHHHHHHS-CTTCEEEEEEECTTSTTHHHHHHHHHHHHTTCTTSEEEEEEHH-HHTCSTTSCGGGCSE
T ss_pred             CCeEEEcCCHHHHHHHHHhc-CCCcEEEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEEECC-cHHHHHHCCCCCCCE
Confidence            46688888889998877533 3458999999999999999999999999999999999999999 888999999999999


Q ss_pred             EEEEeCCeEEEEEeCC-Ch-------HHHHHHHHHH
Q 032502          103 FFFLKDGQQVDKLVGA-NK-------PELQKKVAAA  130 (139)
Q Consensus       103 ~~~~~~g~~~~~~~g~-~~-------~~l~~~i~~~  130 (139)
                      +++|++|+++.++.|. +.       +.|..+|.+.
T Consensus       176 l~~~~~G~~v~~~~G~~~~~g~~~~~~~Le~~L~~~  211 (217)
T 2trc_P          176 LLVYKGGELISNFISVAEQFAEDFFAADVESFLNEY  211 (217)
T ss_dssp             EEEEETTEEEEEETTGGGGSCSSCCHHHHHHHHHTT
T ss_pred             EEEEECCEEEEEEeCCcccCcccCCHHHHHHHHHHc
Confidence            9999999999999988 43       7788877764

>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1

Probab=99.87  E-value=1.6e-22  Score=124.83  Aligned_cols=102  Identities=29%  Similarity=0.646  Sum_probs=85.0

Q ss_pred             eEEeechhHHHHHHHHHhhCCCEEEEEEeCCCCh--------------hhhhhhHhHHHHHHhCC-CcEEEEEeCCcchh
Q 032502           26 VSLVTTKDIWDQKMSEASKEGKIVIANFSATWCG--------------PCRMIAPFFSELSEKYP-SLMFLLVDVDELVE   90 (139)
Q Consensus        26 ~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~--------------~C~~~~~~l~~~~~~~~-~v~~~~vd~~~~~~   90 (139)
                      +..+ +.++|+..+.   .++++++|+||++||+              +|+.+.|.++++++.++ ++.++.+|+++++.
T Consensus         5 v~~l-~~~~f~~~~~---~~~k~vlv~F~a~wC~~c~~l~~~~~~~~~~C~~~~p~~~~l~~~~~~~~~~~~vd~d~~~~   80 (123)
T 1oaz_A            5 IIHL-TDDSFDTDVL---KADGAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPG   80 (123)
T ss_dssp             CEEC-CSTTHHHHTT---SCSSEEEEEEECSSCSCBSSSTTSCCSCCCCCCTTHHHHTTC-------CEEEEEETTSCTT
T ss_pred             cEec-ChhhHHHHHH---hCCCeEEEEEECCCCccccccccccccCCCCcHHHHHHHHHHHHHhcCCeEEEEEECCCCHH
Confidence            4444 4566765552   5689999999999999              99999999999999887 59999999999999


Q ss_pred             hhhhCCCcceeEEEEEeCCeEEEEEeCC-ChHHHHHHHHHHh
Q 032502           91 FSTSWDIKATPTFFFLKDGQQVDKLVGA-NKPELQKKVAAAV  131 (139)
Q Consensus        91 ~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~i~~~~  131 (139)
                      ++++|+|.++||++++++|+++.++.|. +.++|.++|++++
T Consensus        81 l~~~~~v~~~Pt~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l  122 (123)
T 1oaz_A           81 TAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDANL  122 (123)
T ss_dssp             TGGGGTCCBSSEEEEEESSSEEEEEESCCCHHHHHHHHTTTC
T ss_pred             HHHHcCCCccCEEEEEECCEEEEEEeCCCCHHHHHHHHHHHh
Confidence            9999999999999999999999999998 8899999988765

>1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2

Probab=99.87  E-value=4.7e-22  Score=121.23  Aligned_cols=103  Identities=18%  Similarity=0.474  Sum_probs=89.2

Q ss_pred             eEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCC----CcEEEEEeCCcchhhhhhCCCccee
Q 032502           26 VSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP----SLMFLLVDVDELVEFSTSWDIKATP  101 (139)
Q Consensus        26 ~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~----~v~~~~vd~~~~~~~~~~~~v~~~P  101 (139)
                      +..+ +.++|+..+    .++++++|+||++||++|+.+.|.+.++++.+.    ++.++.+|++++..++++|++.++|
T Consensus         9 v~~l-~~~~~~~~~----~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P   83 (120)
T 1mek_A            9 VLVL-RKSNFAEAL----AAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEESDLAQQYGVRGYP   83 (120)
T ss_dssp             EEEC-CTTTHHHHH----HHCSEEEEEEECSSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETTTCCSSHHHHTCCSSS
T ss_pred             cEEe-chhhHHHHH----ccCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhccCCcEEEEEEcCCCCHHHHHHCCCCccc
Confidence            3443 566777655    357999999999999999999999999999885    4999999999999999999999999


Q ss_pred             EEEEEeCCeEE--EEEeCC-ChHHHHHHHHHHhhc
Q 032502          102 TFFFLKDGQQV--DKLVGA-NKPELQKKVAAAVDS  133 (139)
Q Consensus       102 t~~~~~~g~~~--~~~~g~-~~~~l~~~i~~~~~~  133 (139)
                      |++++++|+.+  ..+.|. +.+.|.++|.++++.
T Consensus        84 t~~~~~~g~~~~~~~~~g~~~~~~l~~~l~~~~~~  118 (120)
T 1mek_A           84 TIKFFRNGDTASPKEYTAGREADDIVNWLKKRTGP  118 (120)
T ss_dssp             EEEEEESSCSSSCEECCCCSSHHHHHHHHHTTSCC
T ss_pred             EEEEEeCCCcCCcccccCccCHHHHHHHHHhccCC
Confidence            99999999987  788888 899999999887654

>3iv4_A Putative oxidoreductase; APC23140, meticillin-resistant staphylococcus aureus, oxidor thioredoxin fold, structural genomics, PSI-2; HET: MSE; 1.50A {Staphylococcus aureus subsp}

Probab=99.87  E-value=2.1e-21  Score=116.66  Aligned_cols=99  Identities=16%  Similarity=0.186  Sum_probs=86.8

Q ss_pred             CceEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchh----hhhhCCCc-
Q 032502           24 GNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVE----FSTSWDIK-   98 (139)
Q Consensus        24 ~~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~----~~~~~~v~-   98 (139)
                      +....+.+.++|++.+.    ++++++|+|+|+||+.|+.+.|.++++.+. +++.|+.+|.+++++    ++.+|||+ 
T Consensus         6 ~~~~~i~s~e~f~~ii~----~~~~vvi~khatwCgpc~~~~~~~e~~~~~-~~v~~~~vdVde~r~~Sn~IA~~~~V~h   80 (112)
T 3iv4_A            6 GVAIKLSSIDQFEQVIE----ENKYVFVLKHSETCPISANAYDQFNKFLYE-RDMDGYYLIVQQERDLSDYIAKKTNVKH   80 (112)
T ss_dssp             GCEEECCSHHHHHHHHH----HCSEEEEEEECTTCHHHHHHHHHHHHHHHH-HTCCEEEEEGGGGHHHHHHHHHHHTCCC
T ss_pred             cceeecCCHHHHHHHHh----cCCCEEEEEECCcCHhHHHHHHHHHHHhcc-CCceEEEEEeecCchhhHHHHHHhCCcc
Confidence            45678889999988774    489999999999999999999999999886 689999999999977    79999999 


Q ss_pred             ceeEEEEEeCCeEEEEEeCC--ChHHHHHHH
Q 032502           99 ATPTFFFLKDGQQVDKLVGA--NKPELQKKV  127 (139)
Q Consensus        99 ~~Pt~~~~~~g~~~~~~~g~--~~~~l~~~i  127 (139)
                      ..|++++|++|+.+......  +.+.|.+.+
T Consensus        81 ~sPq~il~k~G~~v~~~SH~~I~~~~l~~~~  111 (112)
T 3iv4_A           81 ESPQAFYFVNGEMVWNRDHGDINVSSLAQAE  111 (112)
T ss_dssp             CSSEEEEEETTEEEEEEEGGGCSHHHHHHHT
T ss_pred             CCCeEEEEECCEEEEEeeccccCHHHHHHhh
Confidence            59999999999999986644  888777654

>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}

Probab=99.87  E-value=1.3e-21  Score=121.30  Aligned_cols=106  Identities=31%  Similarity=0.590  Sum_probs=90.2

Q ss_pred             chhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhH---HHHHHhCC-CcEEEEEeCC--cchhhhhhCCCcceeEEE
Q 032502           31 TKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFF---SELSEKYP-SLMFLLVDVD--ELVEFSTSWDIKATPTFF  104 (139)
Q Consensus        31 ~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l---~~~~~~~~-~v~~~~vd~~--~~~~~~~~~~v~~~Pt~~  104 (139)
                      +..++++.+..+..+++++||+||++||++|+.+.+.+   ..+.+.+. ++.++.+|++  .+..++++|+|.++||++
T Consensus        12 ~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~v~~~Pt~~   91 (130)
T 2kuc_A           12 RELSFPEALKRAEVEDKLLFVDCFTTWCGPCKRLSKVVFKDSLVADYFNRHFVNLKMDMEKGEGVELRKKYGVHAYPTLL   91 (130)
T ss_dssp             BCCCHHHHHHHHHHHSSCEEEEECCTTCTHHHHHHHHGGGCHHHHHHHHHHSEEEEECSSSTTHHHHHHHTTCCSSCEEE
T ss_pred             ccCCHHHHHHHHHhcCCeEEEEEECCCCccHHHHHHHhcCcHHHHHHHhcCeEEEEEecCCcchHHHHHHcCCCCCCEEE
Confidence            34567777776666789999999999999999999998   66666553 4889999998  578899999999999999


Q ss_pred             EE-eCCeEEEEEeCC-ChHHHHHHHHHHhhccCC
Q 032502          105 FL-KDGQQVDKLVGA-NKPELQKKVAAAVDSVVP  136 (139)
Q Consensus       105 ~~-~~g~~~~~~~g~-~~~~l~~~i~~~~~~~~~  136 (139)
                      ++ ++|+++.++.|. +.++|.++|++++....+
T Consensus        92 ~~d~~G~~~~~~~G~~~~~~l~~~l~~~~~~~~~  125 (130)
T 2kuc_A           92 FINSSGEVVYRLVGAEDAPELLKKVKLGVESEGH  125 (130)
T ss_dssp             EECTTSCEEEEEESCCCHHHHHHHHHHHHSCCC-
T ss_pred             EECCCCcEEEEecCCCCHHHHHHHHHHHHHhccc
Confidence            99 899999999998 899999999998776544

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}

Probab=99.87  E-value=2.8e-21  Score=129.17  Aligned_cols=105  Identities=20%  Similarity=0.353  Sum_probs=93.1

Q ss_pred             eEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCC-cEEEEEeCCcchhhhhhCCCcceeEEE
Q 032502           26 VSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVDELVEFSTSWDIKATPTFF  104 (139)
Q Consensus        26 ~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~-v~~~~vd~~~~~~~~~~~~v~~~Pt~~  104 (139)
                      +..+ +.++++..+    .+++++||+||++||++|+.+.|.+.++++.+++ +.|+.+|+++++.++++|+|.++||++
T Consensus        99 v~~l-~~~~f~~~~----~~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~  173 (210)
T 3apq_A           99 IITL-ERREFDAAV----NSGELWFVNFYSPGCSHCHDLAPTWREFAKEVDGLLRIGAVNCGDDRMLCRMKGVNSYPSLF  173 (210)
T ss_dssp             SEEC-CHHHHHHHH----HHSCCEEEEEECTTCHHHHHHHHHHHHHHHHTBTTBEEEEEETTTCHHHHHHTTCCSSSEEE
T ss_pred             eEEe-cHHHHHHHH----ccCCcEEEEEeCCCChhHHHHHHHHHHHHHHhcCceEEEEEECCccHHHHHHcCCCcCCeEE
Confidence            4443 456666655    4589999999999999999999999999999975 999999999999999999999999999


Q ss_pred             EEeCCeEEEEEeCC-ChHHHHHHHHHHhhccC
Q 032502          105 FLKDGQQVDKLVGA-NKPELQKKVAAAVDSVV  135 (139)
Q Consensus       105 ~~~~g~~~~~~~g~-~~~~l~~~i~~~~~~~~  135 (139)
                      ++++|+++.++.|. +.+.|.++|.+++....
T Consensus       174 ~~~~G~~~~~~~G~~~~~~l~~~i~~~l~~~~  205 (210)
T 3apq_A          174 IFRSGMAAVKYNGDRSKESLVAFAMQHVRSTV  205 (210)
T ss_dssp             EECTTSCCEECCSCCCHHHHHHHHHHHHHCCS
T ss_pred             EEECCCceeEecCCCCHHHHHHHHHHhCcccc
Confidence            99999999999998 99999999999987644

>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A

Probab=99.86  E-value=5.3e-22  Score=125.31  Aligned_cols=106  Identities=15%  Similarity=0.179  Sum_probs=76.5

Q ss_pred             ceEEeechhHHHHHHHHHhhCCCEEEEEEeCCC--ChhhhhhhHhHHHHHHhCCCcE--EEEEeCCcchhhhhhCCCcce
Q 032502           25 NVSLVTTKDIWDQKMSEASKEGKIVIANFSATW--CGPCRMIAPFFSELSEKYPSLM--FLLVDVDELVEFSTSWDIKAT  100 (139)
Q Consensus        25 ~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~--C~~C~~~~~~l~~~~~~~~~v~--~~~vd~~~~~~~~~~~~v~~~  100 (139)
                      .+..+. .++|++.+.    +++.++|+||++|  |++|+.+.|.|++++++++++.  |+.||++++++++.+|+|.++
T Consensus        18 ~~~~l~-~~~f~~~i~----~~~~~vv~f~~~~~~C~~C~~l~P~l~~la~~~~~v~~~~~~Vd~d~~~~la~~~~V~~i   92 (142)
T 2es7_A           18 GWQPVE-ASTVDDWIK----RVGDGVILLSSDPRRTPEVSDNPVMIAELLREFPQFDWQVAVADLEQSEAIGDRFNVRRF   92 (142)
T ss_dssp             TCEECC-CC------------CCSEEEEECCCSCC----CCHHHHHHHHHHTCTTSCCEEEEECHHHHHHHHHTTTCCSS
T ss_pred             cCcccc-cccHHHHHH----hCCCEEEEEECCCCCCccHHHHHHHHHHHHHHhcccceeEEEEECCCCHHHHHhcCCCcC
Confidence            344443 477777663    3456788899877  9999999999999999996688  999999999999999999999


Q ss_pred             eEEEEEeCCeEEEEEeCC-ChHHHHHHHHHHhhccC
Q 032502          101 PTFFFLKDGQQVDKLVGA-NKPELQKKVAAAVDSVV  135 (139)
Q Consensus       101 Pt~~~~~~g~~~~~~~g~-~~~~l~~~i~~~~~~~~  135 (139)
                      ||+++|++|+++.++.|. +.++|.++|+++++...
T Consensus        93 PT~~~fk~G~~v~~~~G~~~~~~l~~~i~~~l~~~~  128 (142)
T 2es7_A           93 PATLVFTDGKLRGALSGIHPWAELLTLMRSIVDTPA  128 (142)
T ss_dssp             SEEEEESCC----CEESCCCHHHHHHHHHHHHC---
T ss_pred             CeEEEEeCCEEEEEEeCCCCHHHHHHHHHHHhcccc
Confidence            999999999999999998 89999999999886543

>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C

Probab=99.86  E-value=3e-21  Score=131.56  Aligned_cols=107  Identities=10%  Similarity=0.228  Sum_probs=91.0

Q ss_pred             CCCceEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhhhhhCCCccee
Q 032502           22 AGGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATP  101 (139)
Q Consensus        22 ~~~~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P  101 (139)
                      ..+.+..+.+.++|...+... .++++|||+||++||++|+.+.|.|.+++.+|+++.|+.||++. ..++.+|+|.++|
T Consensus       110 ~~G~V~ei~s~~~f~~~v~~~-~~~k~VvV~Fya~wC~~Ck~l~p~l~~La~~~~~v~f~kVd~d~-~~l~~~~~I~~~P  187 (245)
T 1a0r_P          110 RYGFVYELESGEQFLETIEKE-QKITTIVVHIYEDGIKGCDALNSSLICLAAEYPMVKFCKIKASN-TGAGDRFSSDVLP  187 (245)
T ss_dssp             CCCSEEECCSHHHHHHHHHSS-CTTCEEEEEEECTTSTTHHHHHHHHHHHHHHCTTSEEEEEEHHH-HCCTTSSCTTTCS
T ss_pred             CCCeEEEeCCHHHHHHHHHHh-cCCCEEEEEEECCCChHHHHHHHHHHHHHHHCCCCEEEEEeCCc-HHHHHHCCCCCCC
Confidence            345778887889998887532 24789999999999999999999999999999999999999987 7789999999999


Q ss_pred             EEEEEeCCeEEEEEeCC-C-------hHHHHHHHHHH
Q 032502          102 TFFFLKDGQQVDKLVGA-N-------KPELQKKVAAA  130 (139)
Q Consensus       102 t~~~~~~g~~~~~~~g~-~-------~~~l~~~i~~~  130 (139)
                      |+++|++|+++.++.|. .       .+.|..+|.+.
T Consensus       188 Tll~~~~G~~v~~~vG~~~~~g~~~~~e~Le~~L~~~  224 (245)
T 1a0r_P          188 TLLVYKGGELLSNFISVTEQLAEEFFTGDVESFLNEY  224 (245)
T ss_dssp             EEEEEETTEEEEEETTGGGGSCTTCCHHHHHHHHHTT
T ss_pred             EEEEEECCEEEEEEeCCcccccccccHHHHHHHHHHc
Confidence            99999999999998886 2       24566666554

>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1

Probab=99.85  E-value=1.8e-21  Score=118.96  Aligned_cols=93  Identities=17%  Similarity=0.263  Sum_probs=76.1

Q ss_pred             chhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCc------chhhhhhCCCcceeEEE
Q 032502           31 TKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDE------LVEFSTSWDIKATPTFF  104 (139)
Q Consensus        31 ~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~------~~~~~~~~~v~~~Pt~~  104 (139)
                      +.+++...+    .++++++|+||++||++|+.+.|.+.+++++++ ..+..+|++.      ...++++|+|.++||++
T Consensus        18 ~~~~~~~~~----~~~~~~~v~f~a~wC~~C~~~~p~l~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~i~~~Pt~~   92 (118)
T 1zma_A           18 TVVRAQEAL----DKKETATFFIGRKTCPYCRKFAGTLSGVVAETK-AHIYFINSEEPSQLNDLQAFRSRYGIPTVPGFV   92 (118)
T ss_dssp             CHHHHHHHH----HTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHC-CCCEEEETTCGGGHHHHHHHHHHHTCCSSCEEE
T ss_pred             CHHHHHHHH----hCCCeEEEEEECCCCccHHHHHHHHHHHHHhcC-CeEEEEECCCcCcHHHHHHHHHHcCCCCCCeEE
Confidence            556666555    457899999999999999999999999998875 3344455443      35788999999999999


Q ss_pred             EEeCCeEEEEEeCC-ChHHHHHHHH
Q 032502          105 FLKDGQQVDKLVGA-NKPELQKKVA  128 (139)
Q Consensus       105 ~~~~g~~~~~~~g~-~~~~l~~~i~  128 (139)
                      ++++|+++.++.|. +.++|.++|.
T Consensus        93 ~~~~G~~~~~~~G~~~~~~l~~~l~  117 (118)
T 1zma_A           93 HITDGQINVRCDSSMSAQEIKDFAG  117 (118)
T ss_dssp             EEETTEEEEECCTTCCHHHHHHHHT
T ss_pred             EEECCEEEEEecCCCCHHHHHHHhh
Confidence            99999999999998 8888888764

>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.85  E-value=3.6e-22  Score=125.13  Aligned_cols=99  Identities=23%  Similarity=0.433  Sum_probs=83.1

Q ss_pred             eEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCC--CcEEEEEeCCcchhhhhhCCCc-----
Q 032502           26 VSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP--SLMFLLVDVDELVEFSTSWDIK-----   98 (139)
Q Consensus        26 ~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~~~~~~~~~~v~-----   98 (139)
                      +..+ +.++|+..+.  ..++++++|+||++||++|+.+.|.++++++++.  ++.|+.+|++++++++++|+|.     
T Consensus         9 v~~l-~~~~f~~~~~--~~~~~~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~~~~   85 (137)
T 2dj0_A            9 IKYF-NDKTIDEELE--RDKRVTWIVEFFANWSNDCQSFAPIYADLSLKYNCTGLNFGKVDVGRYTDVSTRYKVSTSPLT   85 (137)
T ss_dssp             CEEC-CTTHHHHHHH--HSTTSCEEEEECCTTCSTTTTTHHHHHHHHHHHCSSSCEEEECCTTTCHHHHHHTTCCCCSSS
T ss_pred             EEEc-cHhhHHHHHh--cCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEeCccCHHHHHHccCcccCCc
Confidence            4444 4677877773  2345699999999999999999999999999986  5999999999999999999999     


Q ss_pred             -ceeEEEEEeCCeEEEEEeCC-ChHHHHHHH
Q 032502           99 -ATPTFFFLKDGQQVDKLVGA-NKPELQKKV  127 (139)
Q Consensus        99 -~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~i  127 (139)
                       ++||++++++|+++.++.|. +.+.|.++|
T Consensus        86 ~~~Pt~~~~~~G~~~~~~~G~~~~~~l~~~l  116 (137)
T 2dj0_A           86 KQLPTLILFQGGKEAMRRPQIDKKGRAVSWT  116 (137)
T ss_dssp             SCSSEEEEESSSSEEEEESCBCSSSCBCCCC
T ss_pred             CCCCEEEEEECCEEEEEecCcCchHHHHHHH
Confidence             99999999999999998887 555554443

>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A

Probab=99.85  E-value=4.4e-21  Score=120.77  Aligned_cols=95  Identities=20%  Similarity=0.346  Sum_probs=83.8

Q ss_pred             HHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCC-cEEEEEeCC---------------------------cchh
Q 032502           39 MSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVD---------------------------ELVE   90 (139)
Q Consensus        39 ~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~-v~~~~vd~~---------------------------~~~~   90 (139)
                      +.+...+++++||+||++||++|+.+.+.+.++++++++ +.++.++++                           .+..
T Consensus        22 ~~~~~~~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  101 (148)
T 2b5x_A           22 TREQLIGEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQDQLNVVAVHMPRSEDDLDPGKIKETAAEHDITQPIFVDSDHA  101 (148)
T ss_dssp             CHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTSEEEEEECCCSTTTSSHHHHHHHHHHTTCCSCEEECSSCH
T ss_pred             cchhhcCCCEEEEEEEcCCCHHHHHHhHHHHHHHHHhcCCcEEEEEEcCCCccccCHHHHHHHHHHcCCCcceEECCchh
Confidence            344446789999999999999999999999999999886 999999854                           4557


Q ss_pred             hhhhCCCcceeEEEEE-eCCeEEEEEeCC-ChHHHHHHHHHHhhc
Q 032502           91 FSTSWDIKATPTFFFL-KDGQQVDKLVGA-NKPELQKKVAAAVDS  133 (139)
Q Consensus        91 ~~~~~~v~~~Pt~~~~-~~g~~~~~~~g~-~~~~l~~~i~~~~~~  133 (139)
                      +++.|++.++|+++++ ++|+++.++.|. +.+++.++|+++++.
T Consensus       102 ~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~l~~  146 (148)
T 2b5x_A          102 LTDAFENEYVPAYYVFDKTGQLRHFQAGGSGMKMLEKRVNRVLAE  146 (148)
T ss_dssp             HHHHTCCCCSSEEEEECTTCBEEEEEESCSTTHHHHHHHHHHHTT
T ss_pred             HHHHhCCCCCCEEEEECCCCcEEEEecCCCCHHHHHHHHHHHHhc
Confidence            8899999999999999 899999999998 899999999999875

>3f9u_A Putative exported cytochrome C biogenesis-related; exported cytochrome C biogenesis-related protein, bacteroide fragilis; 2.20A {Bacteroides fragilis nctc 9343}

Probab=99.85  E-value=2.5e-21  Score=125.56  Aligned_cols=105  Identities=16%  Similarity=0.299  Sum_probs=86.6

Q ss_pred             echhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhH---HHHHHhCC-CcEEEEEeCCcchhh--------------
Q 032502           30 TTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFF---SELSEKYP-SLMFLLVDVDELVEF--------------   91 (139)
Q Consensus        30 ~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l---~~~~~~~~-~v~~~~vd~~~~~~~--------------   91 (139)
                      .+..++++.+..+..++|+++|+||++||++|+.+.+.+   .++.+.+. ++.++.+|+++...+              
T Consensus        31 ~~~~~~~~~~~~a~~~gk~vlv~F~A~WC~~C~~~~~~~~~~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~  110 (172)
T 3f9u_A           31 AKFDDYDLGMEYARQHNKPVMLDFTGYGCVNCRKMELAVWTDPKVSSIINNDYVLITLYVDNKTPLTEPVKIMENGTERT  110 (172)
T ss_dssp             CCBSCHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHTTTSHHHHHHHHHHCEEEEEETTCCCEEEEEEEEEETTEEEE
T ss_pred             cchhhHHHHHHHHHHcCCeEEEEEECCCCHHHHHHHHHhcCCHHHHHHhcCCEEEEEEecCcccccchhhhhhhcchhhh
Confidence            456778888888888899999999999999999983333   44444443 599999999876644              


Q ss_pred             ------------hhhCCCcceeEEEEE-eCCeEEEEEeCC-C-hHHHHHHHHHHhhcc
Q 032502           92 ------------STSWDIKATPTFFFL-KDGQQVDKLVGA-N-KPELQKKVAAAVDSV  134 (139)
Q Consensus        92 ------------~~~~~v~~~Pt~~~~-~~g~~~~~~~g~-~-~~~l~~~i~~~~~~~  134 (139)
                                  .++|+|.++||++++ ++|+++.+..|. + .+++.++|++.++..
T Consensus       111 ~~~~~~~~~~~~~~~~~v~~~Pt~~lid~~G~~~~~~~G~~~~~~~l~~~l~~~l~~~  168 (172)
T 3f9u_A          111 LRTVGDKWSYLQRVKFGANAQPFYVLIDNEGNPLNKSYAYDEDISKYINFLQTGLENY  168 (172)
T ss_dssp             EEEHHHHHHHHHHHHHSCCCSSEEEEECTTSCBSSCCBCSCCCHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhHHHHHHcCCCCcceEEEECCCCCEEeeccCCCCCHHHHHHHHHHHHHHh
Confidence                        688999999999999 899999998898 6 999999999988764

>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A

Probab=99.85  E-value=3.9e-21  Score=119.30  Aligned_cols=93  Identities=23%  Similarity=0.398  Sum_probs=81.6

Q ss_pred             HHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCc-----------------------chhhhhhC
Q 032502           39 MSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDE-----------------------LVEFSTSW   95 (139)
Q Consensus        39 ~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~-----------------------~~~~~~~~   95 (139)
                      +.+...++++++|+||++||++|+.+.+.+.++.++++++.++.++.+.                       +..+++.|
T Consensus        18 ~~l~~~~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~   97 (136)
T 1zzo_A           18 FHGESLLGKPAVLWFWAPWCPTCQGEAPVVGQVAASHPEVTFVGVAGLDQVPAMQEFVNKYPVKTFTQLADTDGSVWANF   97 (136)
T ss_dssp             EEGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCHHHHHHHHHHTTCTTSEEEECTTCHHHHHT
T ss_pred             eeHHHhCCCeEEEEEEcCCChhHHHHHHHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHHHcCCCceEEEEcCCcHHHHHc
Confidence            3444457899999999999999999999999999999899999999854                       46788999


Q ss_pred             CCcceeEEEEE-eCCeEEEEEeCC-ChHHHHHHHHHHhh
Q 032502           96 DIKATPTFFFL-KDGQQVDKLVGA-NKPELQKKVAAAVD  132 (139)
Q Consensus        96 ~v~~~Pt~~~~-~~g~~~~~~~g~-~~~~l~~~i~~~~~  132 (139)
                      ++.++|+++++ ++|+++ ++.|. +.++|.++|+++++
T Consensus        98 ~i~~~P~~~~id~~g~i~-~~~g~~~~~~l~~~l~~~l~  135 (136)
T 1zzo_A           98 GVTQQPAYAFVDPHGNVD-VVRGRMSQDELTRRVTALTS  135 (136)
T ss_dssp             TCCSSSEEEEECTTCCEE-EEESCCCHHHHHHHHHHHC-
T ss_pred             CCCCCceEEEECCCCCEE-EEecCCCHHHHHHHHHHHhc
Confidence            99999999999 799999 88898 99999999998864

>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*

Probab=99.85  E-value=3.9e-21  Score=116.75  Aligned_cols=92  Identities=12%  Similarity=0.152  Sum_probs=75.4

Q ss_pred             CCCEEEEEEeCCCChhhhhhhHhHHHHHHhC---CCcEEEEEeCCcc--hhhhhhCCCcceeEEEEEeCCeEEEEEeCC-
Q 032502           45 EGKIVIANFSATWCGPCRMIAPFFSELSEKY---PSLMFLLVDVDEL--VEFSTSWDIKATPTFFFLKDGQQVDKLVGA-  118 (139)
Q Consensus        45 ~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~---~~v~~~~vd~~~~--~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-  118 (139)
                      +.+.+||+||++||++|+.+.+.+....+..   ..+.++.+|++.+  .+++.+|+|.++||+++|++|+++.++.|. 
T Consensus        17 ~~~~~LV~F~A~wC~~Ck~~~~~i~~~~~~~a~~~~~~l~~vdv~~~~~~~la~~~~V~g~PT~i~f~~G~ev~Ri~G~~   96 (116)
T 3dml_A           17 KAELRLLMFEQPGCLYCARWDAEIAPQYPLTDEGRAAPVQRLQMRDPLPPGLELARPVTFTPTFVLMAGDVESGRLEGYP   96 (116)
T ss_dssp             --CEEEEEEECTTCHHHHHHHHHTTTTGGGSHHHHHSCEEEEETTSCCCTTCBCSSCCCSSSEEEEEETTEEEEEEECCC
T ss_pred             cCCCEEEEEECCCCHHHHHHHHHHHhhHHHhhhcccceEEEEECCCCCchhHHHHCCCCCCCEEEEEECCEEEeeecCCC
Confidence            4578999999999999999987553332221   1267888899876  578899999999999999999999999999 


Q ss_pred             ChHHHHHHHHHHhhccCC
Q 032502          119 NKPELQKKVAAAVDSVVP  136 (139)
Q Consensus       119 ~~~~l~~~i~~~~~~~~~  136 (139)
                      +.+.|..+|.+++....+
T Consensus        97 ~~~~f~~~L~~~l~~~~~  114 (116)
T 3dml_A           97 GEDFFWPMLARLIGQAEP  114 (116)
T ss_dssp             CHHHHHHHHHHHHHHHC-
T ss_pred             CHHHHHHHHHHHHhhcCC
Confidence            999999999999987765

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A

Probab=99.84  E-value=3e-20  Score=125.95  Aligned_cols=105  Identities=24%  Similarity=0.480  Sum_probs=90.4

Q ss_pred             CceEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCC----cEEEEEeCCcchhhhhhCCCcc
Q 032502           24 GNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS----LMFLLVDVDELVEFSTSWDIKA   99 (139)
Q Consensus        24 ~~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~----v~~~~vd~~~~~~~~~~~~v~~   99 (139)
                      ..+..+ +.++|+..+    .++++++|+||++||++|+.+.|.+.++++.+++    +.++.+|++++..++++|+|.+
T Consensus        15 ~~v~~l-~~~~~~~~~----~~~~~v~v~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~   89 (241)
T 3idv_A           15 NGVLVL-NDANFDNFV----ADKDTVLLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVAKIDATSASVLASRFDVSG   89 (241)
T ss_dssp             TTEEEE-CTTTHHHHH----TTCSEEEEEEECTTCHHHHHHHHHHHHHHHHHHTSSSCCCEEEEETTTCHHHHHHTTCCS
T ss_pred             CCcEEe-cccCHHHHH----hcCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhhcCCceEEEEEeccCCHHHHHhcCCCc
Confidence            345544 566777665    5689999999999999999999999999988753    9999999999999999999999


Q ss_pred             eeEEEEEeCCeEEEEEeCC-ChHHHHHHHHHHhhcc
Q 032502          100 TPTFFFLKDGQQVDKLVGA-NKPELQKKVAAAVDSV  134 (139)
Q Consensus       100 ~Pt~~~~~~g~~~~~~~g~-~~~~l~~~i~~~~~~~  134 (139)
                      +||++++++|+.+. +.|. +.+.|.+++.+.+...
T Consensus        90 ~Pt~~~~~~g~~~~-~~g~~~~~~l~~~i~~~~~~~  124 (241)
T 3idv_A           90 YPTIKILKKGQAVD-YEGSRTQEEIVAKVREVSQPD  124 (241)
T ss_dssp             SSEEEEEETTEEEE-CCSCSCHHHHHHHHHHHHSTT
T ss_pred             CCEEEEEcCCCccc-ccCcccHHHHHHHHhhccCcc
Confidence            99999999999884 6677 9999999999987653

>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum}

Probab=99.84  E-value=7.1e-21  Score=121.58  Aligned_cols=98  Identities=13%  Similarity=0.202  Sum_probs=83.2

Q ss_pred             HHHHHhhCCCEEEEEEeCCCChhhhh-hhHhHHHHHHhCCC--cEEEEEeCC----------------------------
Q 032502           38 KMSEASKEGKIVIANFSATWCGPCRM-IAPFFSELSEKYPS--LMFLLVDVD----------------------------   86 (139)
Q Consensus        38 ~~~~~~~~~k~vlv~f~~~~C~~C~~-~~~~l~~~~~~~~~--v~~~~vd~~----------------------------   86 (139)
                      .+.++..++|++||+||++||++|+. +.+.|.++++++++  +.++.|+.+                            
T Consensus        22 ~~~l~~~~gk~vlv~F~a~~C~~C~~e~~~~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  101 (160)
T 3lor_A           22 GLSNEDLRGKVVVVEVFQMLCPGCVNHGVPQAQKIHRMIDESQVQVIGLHSVFEHHDVMTPEALKVFIDEFGIKFPVAVD  101 (160)
T ss_dssp             CCCHHHHTTSEEEEEEECTTCHHHHHTHHHHHHHHHHHSCTTTEEEEEEECCCSCGGGSCHHHHHHHHHHTTCCSCEEEE
T ss_pred             ccCHHHhCCCEEEEEEEcCCCcchhhhhhHHHHHHHHHhCcCCcEEEEEeccccccccCCHHHHHHHHHHcCCCCcEEEC
Confidence            34455567999999999999999999 59999999999974  999999862                            


Q ss_pred             cchh------hhhhCCCcceeEEEEE-eCCeEEEEEeCC-ChHHHHHHHHHHhhccC
Q 032502           87 ELVE------FSTSWDIKATPTFFFL-KDGQQVDKLVGA-NKPELQKKVAAAVDSVV  135 (139)
Q Consensus        87 ~~~~------~~~~~~v~~~Pt~~~~-~~g~~~~~~~g~-~~~~l~~~i~~~~~~~~  135 (139)
                      ....      +.+.|++.++|+++++ ++|+++.++.|. +.+++.+.|+++++...
T Consensus       102 ~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll~~~~  158 (160)
T 3lor_A          102 MPREGQRIPSTMKKYRLEGTPSIILADRKGRIRQVQFGQVDDFVLGLLLGSLLSETD  158 (160)
T ss_dssp             CCCTTCSSCHHHHHTTCCSSSEEEEECTTSBEEEEEESCCCHHHHHHHHHHHHTCC-
T ss_pred             CccccchhhhHHHhcccCccceEEEECCCCcEEEEecCcCCHHHHHHHHHHHHhccC
Confidence            2233      7889999999998888 799999999999 89999999999987643

>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=99.84  E-value=4.4e-21  Score=119.25  Aligned_cols=92  Identities=26%  Similarity=0.436  Sum_probs=81.5

Q ss_pred             HHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCc----------------------chhhhhhCC
Q 032502           39 MSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDE----------------------LVEFSTSWD   96 (139)
Q Consensus        39 ~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~----------------------~~~~~~~~~   96 (139)
                      +.+...++++++|+||++||++|+.+.+.+.+++++++++.++.++++.                      +..+++.|+
T Consensus        17 ~~l~~~~~k~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~   96 (136)
T 1lu4_A           17 FDGASLQGKPAVLWFWTPWCPFCNAEAPSLSQVAAANPAVTFVGIATRADVGAMQSFVSKYNLNFTNLNDADGVIWARYN   96 (136)
T ss_dssp             EEGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCHHHHHHHHHHHTCCSEEEECTTSHHHHHTT
T ss_pred             ecHHHhCCCEEEEEEECCcChhHHHHHHHHHHHHHHCCCcEEEEEEcCCCHHHHHHHHHHcCCCceEEECCchhHHHhcC
Confidence            3344456899999999999999999999999999999899999999977                      567889999


Q ss_pred             CcceeEEEEE-eCCeEEEEEe---CC-ChHHHHHHHHHHh
Q 032502           97 IKATPTFFFL-KDGQQVDKLV---GA-NKPELQKKVAAAV  131 (139)
Q Consensus        97 v~~~Pt~~~~-~~g~~~~~~~---g~-~~~~l~~~i~~~~  131 (139)
                      +.++|+++++ ++|+++ ++.   |. +.++|.++|++++
T Consensus        97 i~~~P~~~lid~~G~i~-~~~~~~g~~~~~~l~~~l~~ll  135 (136)
T 1lu4_A           97 VPWQPAFVFYRADGTST-FVNNPTAAMSQDELSGRVAALT  135 (136)
T ss_dssp             CCSSSEEEEECTTSCEE-EECCSSSCCCHHHHHHHHHHC-
T ss_pred             CCCCCEEEEECCCCcEE-EEEcCCCccCHHHHHHHHHHHh
Confidence            9999999999 899999 888   87 8999999998875

>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A

Probab=99.84  E-value=4e-21  Score=121.82  Aligned_cols=98  Identities=21%  Similarity=0.475  Sum_probs=84.2

Q ss_pred             HHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCC--CcEEEEEeCCc----------------------chhhhh
Q 032502           38 KMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP--SLMFLLVDVDE----------------------LVEFST   93 (139)
Q Consensus        38 ~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~----------------------~~~~~~   93 (139)
                      .+.+...+++++||+||++||++|+.+.+.|.++.++++  ++.++.|+.+.                      +..+++
T Consensus        18 ~~~l~~~~gk~vlv~F~~~~C~~C~~~~~~l~~~~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~   97 (151)
T 2f9s_A           18 RIELSDLKGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQGVEIVAVNVGESKIAVHNFMKSYGVNFPVVLDTDRQVLD   97 (151)
T ss_dssp             EEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCHHHHHHHHHHHTCCSCEEEETTSHHHH
T ss_pred             EEEHHHcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHHHHcCCCceEEECCchHHHH
Confidence            344445678999999999999999999999999999886  49999998875                      346888


Q ss_pred             hCCCcceeEEEEE-eCCeEEEEEeCC-ChHHHHHHHHHHhhccC
Q 032502           94 SWDIKATPTFFFL-KDGQQVDKLVGA-NKPELQKKVAAAVDSVV  135 (139)
Q Consensus        94 ~~~v~~~Pt~~~~-~~g~~~~~~~g~-~~~~l~~~i~~~~~~~~  135 (139)
                      .|++.++|+++++ ++|+++.++.|. +.++|.+.|++++....
T Consensus        98 ~~~v~~~P~~~lid~~G~i~~~~~G~~~~~~l~~~l~~ll~~~~  141 (151)
T 2f9s_A           98 AYDVSPLPTTFLINPEGKVVKVVTGTMTESMIHDYMNLIKPGET  141 (151)
T ss_dssp             HTTCCSSCEEEEECTTSEEEEEEESCCCHHHHHHHHHHHSCC--
T ss_pred             hcCCCCCCeEEEECCCCcEEEEEeCCCCHHHHHHHHHHHHhhhh
Confidence            9999999998888 899999999998 99999999999987654

>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae}

Probab=99.84  E-value=2e-20  Score=119.47  Aligned_cols=100  Identities=19%  Similarity=0.391  Sum_probs=85.9

Q ss_pred             hHHHHHHHHHhhCCCEEEEEEe-CCCChhhhhhhHhH---HHHHHhC-CCcEEEEEeCCcc-----------hhhhhhCC
Q 032502           33 DIWDQKMSEASKEGKIVIANFS-ATWCGPCRMIAPFF---SELSEKY-PSLMFLLVDVDEL-----------VEFSTSWD   96 (139)
Q Consensus        33 ~~~~~~~~~~~~~~k~vlv~f~-~~~C~~C~~~~~~l---~~~~~~~-~~v~~~~vd~~~~-----------~~~~~~~~   96 (139)
                      .++++.+..+..++++++|+|| ++||++|+.+.|.+   .++.+.+ .++.++.+|.+..           ..++++|+
T Consensus        34 ~~~~~~~~~a~~~gk~vlv~F~ga~wC~~C~~~~p~l~~~~~~~~~~~~~~~~v~vd~~~~~~~~~~~~~~~~~l~~~~~  113 (154)
T 2ju5_A           34 ESYAEALEHSKQDHKPIGLFFTGSDWCMWCIKMQDQILQSSEFKHFAGVHLHMVEVDFPQKNHQPEEQRQKNQELKAQYK  113 (154)
T ss_dssp             ECHHHHHHHHHHHCCCEEEEEECTTTCHHHHHHHHHTTTSHHHHHHHHHHCEEEEEECCSSCCCCHHHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHhCCCeEEEEEeCCCCCHhHHHHHHHHhcCHHHHHHhcCcEEEEEecCccccCCChhhHhhHHHHHHHcC
Confidence            5567778777778999999999 99999999999999   7776655 3699999999765           37899999


Q ss_pred             CcceeEEEEE-eCCeEEEEEeCC---ChHHHHHHHHHHhhc
Q 032502           97 IKATPTFFFL-KDGQQVDKLVGA---NKPELQKKVAAAVDS  133 (139)
Q Consensus        97 v~~~Pt~~~~-~~g~~~~~~~g~---~~~~l~~~i~~~~~~  133 (139)
                      |.++||++++ ++|+++.+. |.   +.+.+.++|+++++.
T Consensus       114 v~~~Pt~~~~d~~G~~~~~~-G~~~~~~~~l~~~l~~~l~~  153 (154)
T 2ju5_A          114 VTGFPELVFIDAEGKQLARM-GFEPGGGAAYVSKVKSALKL  153 (154)
T ss_dssp             CCSSSEEEEECTTCCEEEEE-CCCTTCHHHHHHHHHHHHTC
T ss_pred             CCCCCEEEEEcCCCCEEEEe-cCCCCCHHHHHHHHHHHHhc
Confidence            9999999999 899999998 86   488899999988763

>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi}

Probab=99.84  E-value=6.8e-21  Score=121.54  Aligned_cols=99  Identities=17%  Similarity=0.374  Sum_probs=84.6

Q ss_pred             HHHHHhhCCCEEEEEEeCCCChhhhhh-hHhHHHHHHhCC--CcEEEEEeCC----------------------------
Q 032502           38 KMSEASKEGKIVIANFSATWCGPCRMI-APFFSELSEKYP--SLMFLLVDVD----------------------------   86 (139)
Q Consensus        38 ~~~~~~~~~k~vlv~f~~~~C~~C~~~-~~~l~~~~~~~~--~v~~~~vd~~----------------------------   86 (139)
                      .+.+...++|++||+||++||++|+.+ .|.|.+++++++  ++.++.|+.+                            
T Consensus        20 ~~~l~~~~gk~vlv~f~a~wC~~C~~~~~~~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d   99 (158)
T 3eyt_A           20 DLTLADLRGKVIVIEAFQMLCPGCVMHGIPLAQKVRAAFPEDKVAVLGLHTVFEHHEAMTPISLKAFLHEYRIKFPVGVD   99 (158)
T ss_dssp             CCCTGGGTTSEEEEEEECTTCHHHHHTHHHHHHHHHHHSCTTTEEEEEEECCCSCGGGSCHHHHHHHHHHTTCCSCEEEE
T ss_pred             ccCHHHhCCCEEEEEEECCcCcchhhhhhHHHHHHHHHhCcCCEEEEEEEecccccccCCHHHHHHHHHHcCCCceEEEc
Confidence            345555679999999999999999996 999999999997  5999998863                            


Q ss_pred             cch-----hhhhhCCCcceeEEEEE-eCCeEEEEEeCC-ChHHHHHHHHHHhhccCC
Q 032502           87 ELV-----EFSTSWDIKATPTFFFL-KDGQQVDKLVGA-NKPELQKKVAAAVDSVVP  136 (139)
Q Consensus        87 ~~~-----~~~~~~~v~~~Pt~~~~-~~g~~~~~~~g~-~~~~l~~~i~~~~~~~~~  136 (139)
                      ...     .+++.|++.++|+++++ ++|+++.++.|. +.++|.+.|+++++...+
T Consensus       100 ~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll~~~~~  156 (158)
T 3eyt_A          100 QPGDGAMPRTMAAYQMRGTPSLLLIDKAGDLRAHHFGDVSELLLGAEIATLLGEAAP  156 (158)
T ss_dssp             CCCSSSSCHHHHHTTCCSSSEEEEECTTSEEEEEEESCCCHHHHHHHHHHHHTSCCC
T ss_pred             CccchhhHHHHHHcCCCCCCEEEEECCCCCEEEEEeCCCCHHHHHHHHHHHhccCCC
Confidence            112     47889999999998888 899999999998 999999999999987654

>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0

Probab=99.84  E-value=8.1e-21  Score=121.80  Aligned_cols=114  Identities=26%  Similarity=0.459  Sum_probs=89.9

Q ss_pred             CCceEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCC--cEEEEEeCCcchhhhhhC-----
Q 032502           23 GGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS--LMFLLVDVDELVEFSTSW-----   95 (139)
Q Consensus        23 ~~~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~--v~~~~vd~~~~~~~~~~~-----   95 (139)
                      +..+|++...+...+.+.+...++|++||+||++||++|+.+.+.|.++++++++  +.++.|+++...+..++|     
T Consensus        11 g~~~p~~~l~~~~g~~~~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~l~~~~~~~~v~~v~v~~d~~~~~~~~~~~~~~   90 (165)
T 3or5_A           11 PTPAPSFSGVTVDGKPFSSASLKGKAYIVNFFATWCPPCRSEIPDMVQVQKTWASRGFTFVGIAVNEQLPNVKNYMKTQG   90 (165)
T ss_dssp             CCBCCCCEEECTTSCEEEGGGGTTCEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTTEEEEEEECSCCHHHHHHHHHHHT
T ss_pred             CCCCCCceeeCCCCCEechhHcCCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHHHHcC
Confidence            3344444433333344555556789999999999999999999999999999874  999999998876655555     


Q ss_pred             ----------------------CCcceeEEEEE-eCCeEEEEEeCC-ChHHHHHHHHHHhhccCC
Q 032502           96 ----------------------DIKATPTFFFL-KDGQQVDKLVGA-NKPELQKKVAAAVDSVVP  136 (139)
Q Consensus        96 ----------------------~v~~~Pt~~~~-~~g~~~~~~~g~-~~~~l~~~i~~~~~~~~~  136 (139)
                                            ++.++|+++++ ++|+++.++.|. +.+++.++|++++++...
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~l~~~~~  155 (165)
T 3or5_A           91 IIYPVMMATPELIRAFNGYIDGGITGIPTSFVIDASGNVSGVIVGPRSKADFDRIVKMALGAKAA  155 (165)
T ss_dssp             CCSCEEECCHHHHHHHHTTSTTCSCSSSEEEEECTTSBEEEEECSCCCHHHHHHHHHHHHC----
T ss_pred             CCCceEecCHHHHHHHhhhhccCCCCCCeEEEECCCCcEEEEEcCCCCHHHHHHHHHHHHhhhcc
Confidence                                  89999998888 899999999998 899999999999887544

>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1

Probab=99.84  E-value=1.6e-20  Score=108.15  Aligned_cols=81  Identities=22%  Similarity=0.429  Sum_probs=74.6

Q ss_pred             CEEEEEEeCCCChhhhhhhHhHHHHHHhCC-CcEEEEEeCCcchhhhhhCCCcceeEEEEEeCCeEEEEEeCC-ChHHHH
Q 032502           47 KIVIANFSATWCGPCRMIAPFFSELSEKYP-SLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGA-NKPELQ  124 (139)
Q Consensus        47 k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~-~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~l~  124 (139)
                      .+++++||++||++|+.+.|.+++++++++ ++.++.+|++++++++++|++.++||+++  +|++  ++.|. +.++|.
T Consensus         3 ~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~--~G~~--~~~G~~~~~~l~   78 (85)
T 1fo5_A            3 KVKIELFTSPMCPHCPAAKRVVEEVANEMPDAVEVEYINVMENPQKAMEYGIMAVPTIVI--NGDV--EFIGAPTKEALV   78 (85)
T ss_dssp             CEEEEEEECCCSSCCCTHHHHHHHHHHHCSSSEEEEEEESSSSCCTTTSTTTCCSSEEEE--TTEE--ECCSSSSSHHHH
T ss_pred             ceEEEEEeCCCCCchHHHHHHHHHHHHHcCCceEEEEEECCCCHHHHHHCCCcccCEEEE--CCEE--eeecCCCHHHHH
Confidence            478999999999999999999999999998 69999999999999999999999999999  8987  67788 899999


Q ss_pred             HHHHHHh
Q 032502          125 KKVAAAV  131 (139)
Q Consensus       125 ~~i~~~~  131 (139)
                      ++|++++
T Consensus        79 ~~l~~~l   85 (85)
T 1fo5_A           79 EAIKKRL   85 (85)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHhC
Confidence            9998764

>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.84  E-value=4.9e-21  Score=119.09  Aligned_cols=108  Identities=23%  Similarity=0.478  Sum_probs=86.8

Q ss_pred             ceEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCC---CcEEEEEeCCcchhhhhhCCCccee
Q 032502           25 NVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP---SLMFLLVDVDELVEFSTSWDIKATP  101 (139)
Q Consensus        25 ~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~---~v~~~~vd~~~~~~~~~~~~v~~~P  101 (139)
                      .+..+. .++|+..+.   .++++++|+||++||++|+.+.|.|.++++++.   ++.|+.+|++.+..++++|+|.++|
T Consensus         8 ~v~~l~-~~~~~~~~~---~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~P   83 (133)
T 2dj3_A            8 PVKVVV-GKTFDAIVM---DPKKDVLIEFYAPWCGHCKQLEPIYTSLGKKYKGQKDLVIAKMDATANDITNDQYKVEGFP   83 (133)
T ss_dssp             SSEECC-TTTCCCCCT---CTTSEEEEEECCTTCSHHHHHHHHHHHHHHHHTTSSSEEEEEECTTTSCCCCSSCCCSSSS
T ss_pred             ceEEEc-CCCHHHHhc---cCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCCEEEEEecCCcCHHHHhhcCCCcCC
Confidence            344443 445544442   247999999999999999999999999999985   5999999999999999999999999


Q ss_pred             EEEEEeCCeEEE--EEe-CC-ChHHHHHHHHHHhhccCC
Q 032502          102 TFFFLKDGQQVD--KLV-GA-NKPELQKKVAAAVDSVVP  136 (139)
Q Consensus       102 t~~~~~~g~~~~--~~~-g~-~~~~l~~~i~~~~~~~~~  136 (139)
                      |++++.+|+.+.  .+. |. +.++|.++|.+++.....
T Consensus        84 t~~~~~~g~~~~~~~~~gg~~~~~~l~~~l~~~~~~~~~  122 (133)
T 2dj3_A           84 TIYFAPSGDKKNPIKFEGGNRDLEHLSKFIDEHATKRSR  122 (133)
T ss_dssp             EEEEECTTCTTSCEECCSSCCSTTHHHHHHHHHSSSCSS
T ss_pred             EEEEEeCCCcccceEecCCCcCHHHHHHHHHHhcccccC
Confidence            999997765432  345 54 899999999999876543

>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus}

Probab=99.73  E-value=2e-22  Score=125.01  Aligned_cols=102  Identities=25%  Similarity=0.457  Sum_probs=88.0

Q ss_pred             HHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhH---HHHHHhCCC-cEEEEEeCC--cchhhhhhCCCcceeEEEEE--e
Q 032502           36 DQKMSEASKEGKIVIANFSATWCGPCRMIAPFF---SELSEKYPS-LMFLLVDVD--ELVEFSTSWDIKATPTFFFL--K  107 (139)
Q Consensus        36 ~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l---~~~~~~~~~-v~~~~vd~~--~~~~~~~~~~v~~~Pt~~~~--~  107 (139)
                      .+.+..+..+++++||+||++||++|+.+.|.+   .++.+.+++ +.++.+|++  ++..++++|+|.++||++++  +
T Consensus         9 ~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~v~~~Pt~~~~d~~   88 (130)
T 2lst_A            9 PEALALAQAHGRMVMVYFHSEHCPYCQQMNTFVLSDPGVSRLLEARFVVASVSVDTPEGQELARRYRVPGTPTFVFLVPK   88 (130)
Confidence            445566667789999999999999999999999   888888875 889999984  66889999999999999999  6


Q ss_pred             CCeE--EEEEeCC-ChHHHHHHHHHHhhccCCC
Q 032502          108 DGQQ--VDKLVGA-NKPELQKKVAAAVDSVVPS  137 (139)
Q Consensus       108 ~g~~--~~~~~g~-~~~~l~~~i~~~~~~~~~~  137 (139)
                      +|++  +.++.|. +.++|.++|++++++..+.
T Consensus        89 ~G~~~~~~~~~G~~~~~~l~~~l~~~~~~~~~~  121 (130)
T 2lst_A           89 AGAWEEVGRLFGSRPRAEFLKELRQVCVKGGAC  121 (130)
Confidence            7998  8888898 8899999999998876554

>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A

Probab=99.83  E-value=6.4e-20  Score=123.43  Aligned_cols=87  Identities=17%  Similarity=0.291  Sum_probs=80.2

Q ss_pred             CCCEE-EEEEeCCCChhhhhhhHhHHHHHHhCC-----CcEEEEEeCCcchhhhhhCCCcceeEEEEEeCCeEEEEEeCC
Q 032502           45 EGKIV-IANFSATWCGPCRMIAPFFSELSEKYP-----SLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGA  118 (139)
Q Consensus        45 ~~k~v-lv~f~~~~C~~C~~~~~~l~~~~~~~~-----~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~  118 (139)
                      .++++ +|.||++||++|+.+.|.+.++++.++     ++.++.+|+++++.++++|+|.++||++++++|+.+.++.|.
T Consensus       132 ~~~~~~~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~G~~~~~~~G~  211 (226)
T 1a8l_A          132 IDQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEYPEWADQYNVMAVPKIVIQVNGEDRVEFEGA  211 (226)
T ss_dssp             CCSCEEEEEEECSSCTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEEGGGCHHHHHHTTCCSSCEEEEEETTEEEEEEESC
T ss_pred             cCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcccccCCcEEEEEEEcccCHHHHHhCCCcccCeEEEEeCCceeEEEcCC
Confidence            34555 999999999999999999999999986     699999999999999999999999999999999999999998


Q ss_pred             -ChHHHHHHHHHHh
Q 032502          119 -NKPELQKKVAAAV  131 (139)
Q Consensus       119 -~~~~l~~~i~~~~  131 (139)
                       +.++|.++|.+++
T Consensus       212 ~~~~~l~~~l~~~l  225 (226)
T 1a8l_A          212 YPEKMFLEKLLSAL  225 (226)
T ss_dssp             CCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHhh
Confidence             8888999998875

>3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide exchange, cell inner membrane, CYT C-type biogenesis, disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB: 3kh9_A

Probab=99.83  E-value=9.4e-21  Score=123.40  Aligned_cols=122  Identities=20%  Similarity=0.418  Sum_probs=97.8

Q ss_pred             CCCCCCcccCCCceEEeechhHHH--HHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCC----
Q 032502           13 EDGEHPVEFAGGNVSLVTTKDIWD--QKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVD----   86 (139)
Q Consensus        13 ~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~----   86 (139)
                      +....+....|..+|++...+...  ..+.+....+|++||+||++||++|+.+.+.|.+++++  ++.++.|+.+    
T Consensus        23 ~~~~~~~~~~G~~~P~f~l~~~~g~~~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~--~v~vv~vs~~d~~~  100 (176)
T 3kh7_A           23 DPSELPSALIGKPFPAFDLPSVQDPARRLTEADLKGKPALVNVWGTWCPSCRVEHPELTRLAEQ--GVVIYGINYKDDNA  100 (176)
T ss_dssp             CGGGSTTTTTTSBCCCCEEEBSSCTTSEEEGGGGCSSCEEEEEECTTCHHHHHHHHHHHHHHHT--TCEEEEEEESCCHH
T ss_pred             CcccccccccCCcCCCcEecccCCCCceecHHHhCCCEEEEEEECCcCHHHHHHHHHHHHHHHC--CCEEEEEeCCCCHH
Confidence            334445667788888877555444  45666667899999999999999999999999999988  7888888853    


Q ss_pred             -------------------cchhhhhhCCCcceeEEEEE-eCCeEEEEEeCC-ChHHHHHHHHHHhhccCC
Q 032502           87 -------------------ELVEFSTSWDIKATPTFFFL-KDGQQVDKLVGA-NKPELQKKVAAAVDSVVP  136 (139)
Q Consensus        87 -------------------~~~~~~~~~~v~~~Pt~~~~-~~g~~~~~~~g~-~~~~l~~~i~~~~~~~~~  136 (139)
                                         .+..+++.|++.++|+++++ ++|+++.++.|. +.+.+.+.|.++++....
T Consensus       101 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~l~~l~~  171 (176)
T 3kh7_A          101 AAIKWLNELHNPYLLSISDADGTLGLDLGVYGAPETYLIDKQGIIRHKIVGVVDQKVWREQLAPLYQQLLD  171 (176)
T ss_dssp             HHHHHHHHTTCCCSEEEEETTCHHHHHHTCCSSCEEEEECTTCBEEEEEESCCCHHHHHHHTHHHHHHHHC
T ss_pred             HHHHHHHHcCCCCceEEECCcchHHHHcCCCCCCeEEEECCCCeEEEEEcCCCCHHHHHHHHHHHHHHHhh
Confidence                               33456788999999977766 899999999998 899999999888876543

>1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A {Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A

Probab=99.83  E-value=3.7e-20  Score=114.03  Aligned_cols=104  Identities=17%  Similarity=0.308  Sum_probs=85.4

Q ss_pred             CceEEeechhHHHHHHHHHhhCCCEEEEEEeCC-------CChhhhhhhHhHHHHHHhCC-CcEEEEEeC-------Ccc
Q 032502           24 GNVSLVTTKDIWDQKMSEASKEGKIVIANFSAT-------WCGPCRMIAPFFSELSEKYP-SLMFLLVDV-------DEL   88 (139)
Q Consensus        24 ~~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~-------~C~~C~~~~~~l~~~~~~~~-~v~~~~vd~-------~~~   88 (139)
                      .....+.+.++|...+...  ++++++|+||++       ||++|+.+.|.+.++++.++ ++.|+.+|+       +.+
T Consensus         4 ~~~v~~~~~~~~~~~~~~~--~~~~v~v~F~a~~~~~~~~wC~~C~~~~p~l~~~~~~~~~~~~~~~vd~~~~~~~~d~~   81 (123)
T 1wou_A            4 YEEVSVSGFEEFHRAVEQH--NGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISEGCVFIYCQVGEKPYWKDPN   81 (123)
T ss_dssp             CEEEEEESHHHHHHHHHTT--TTSEEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCCTTEEEEEEECCCHHHHHCTT
T ss_pred             ceeEEeccHHHHHHHHHHh--CCCEEEEEEEccCCCCCCCcCHHHHHhhHHHHHHHHHcCCCcEEEEEECCCchhhhchh
Confidence            3445667888888877532  489999999999       99999999999999999996 699999999       788


Q ss_pred             hhhhhhCCCcceeEEEEEeCCeEEEEEeCCChHHHHHHHHH
Q 032502           89 VEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKVAA  129 (139)
Q Consensus        89 ~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~l~~~i~~  129 (139)
                      ..++++|+|.++||+++++++..+....+.+.+.|.++|.+
T Consensus        82 ~~~~~~~~i~~~Pt~~~~~~~~~~~g~~~~~~~~l~~~i~~  122 (123)
T 1wou_A           82 NDFRKNLKVTAVPTLLKYGTPQKLVESECLQANLVEMLFSE  122 (123)
T ss_dssp             CHHHHHHCCCSSSEEEETTSSCEEEGGGGGCHHHHHHHHHC
T ss_pred             HHHHHHCCCCeeCEEEEEcCCceEeccccCCHHHHHHHHhc
Confidence            89999999999999999977655444334467777777653

>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1

Probab=99.83  E-value=1.6e-20  Score=108.10  Aligned_cols=80  Identities=20%  Similarity=0.358  Sum_probs=73.6

Q ss_pred             EEEEEEeCCCChhhhhhhHhHHHHHHhCC-CcEEEEEeCCcchhhhhhCCCcceeEEEEEeCCeEEEEEeCC-ChHHHHH
Q 032502           48 IVIANFSATWCGPCRMIAPFFSELSEKYP-SLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGA-NKPELQK  125 (139)
Q Consensus        48 ~vlv~f~~~~C~~C~~~~~~l~~~~~~~~-~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~  125 (139)
                      ..++.||++||++|+.+.|.+++++++++ ++.++.+|++++++++++|++.++||+++  +|++  ++.|. +.++|.+
T Consensus         3 ~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~--~G~~--~~~G~~~~~~l~~   78 (85)
T 1nho_A            3 VNIEVFTSPTCPYCPMAIEVVDEAKKEFGDKIDVEKIDIMVDREKAIEYGLMAVPAIAI--NGVV--RFVGAPSREELFE   78 (85)
T ss_dssp             CCEEEESCSSSCCSTTHHHHHHHHHHHHCSSCCEEEECTTTCGGGGGGTCSSCSSEEEE--TTTE--EEECSSCCHHHHH
T ss_pred             EEEEEEECCCCcchHHHHHHHHHHHHHhcCCeEEEEEECCCCHHHHHhCCceeeCEEEE--CCEE--EEccCCCHHHHHH
Confidence            35889999999999999999999999988 69999999999999999999999999999  8887  67788 8999999


Q ss_pred             HHHHHh
Q 032502          126 KVAAAV  131 (139)
Q Consensus       126 ~i~~~~  131 (139)
                      +|++++
T Consensus        79 ~l~~~l   84 (85)
T 1nho_A           79 AINDEM   84 (85)
T ss_dssp             HHHHHC
T ss_pred             HHHHHh
Confidence            998875

>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae}

Probab=99.83  E-value=1.4e-19  Score=126.88  Aligned_cols=107  Identities=16%  Similarity=0.391  Sum_probs=90.3

Q ss_pred             CCCceEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCC-cEEEEEeCC--cchhhhhhCCCc
Q 032502           22 AGGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVD--ELVEFSTSWDIK   98 (139)
Q Consensus        22 ~~~~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~-v~~~~vd~~--~~~~~~~~~~v~   98 (139)
                      ....+.++ +.++|++.+.   ..+++++|+||++||++|+.+.|.+.++++.+++ +.++.+|++  ++..++++|+|.
T Consensus        15 ~~~~vv~l-t~~~f~~~i~---~~~~~vlV~F~A~wC~~C~~~~p~~~~la~~~~~~~~~~~v~~d~~~~~~l~~~~~I~   90 (298)
T 3ed3_A           15 SDPHISEL-TPKSFDKAIH---NTNYTSLVEFYAPWCGHCKKLSSTFRKAAKRLDGVVQVAAVNCDLNKNKALCAKYDVN   90 (298)
T ss_dssp             SCTTCEEC-CHHHHHHHHT---SSSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTSTTTHHHHHHTTCC
T ss_pred             CCCCeEEe-CHHHHHHHHH---hCCCeEEEEEECCCCHHHHHHHHHHHHHHHHccCCcEEEEEEccCccCHHHHHhCCCC
Confidence            33445554 6777887773   4578999999999999999999999999999986 899999998  688999999999


Q ss_pred             ceeEEEEEeCCe-----------------EEEEEeCC-ChHHHHHHHHHHhh
Q 032502           99 ATPTFFFLKDGQ-----------------QVDKLVGA-NKPELQKKVAAAVD  132 (139)
Q Consensus        99 ~~Pt~~~~~~g~-----------------~~~~~~g~-~~~~l~~~i~~~~~  132 (139)
                      ++||+++|.+|+                 ....+.|. +.+.|.+++.+.+.
T Consensus        91 ~~Pt~~~~~~g~~v~~~~g~~~~~~~~~~~~~~y~G~r~~~~i~~fl~~~~~  142 (298)
T 3ed3_A           91 GFPTLMVFRPPKIDLSKPIDNAKKSFSAHANEVYSGARTLAPIVDFSLSRIR  142 (298)
T ss_dssp             BSSEEEEEECCCC-------------CCCEEEECCSCCSHHHHHHHHHTTCC
T ss_pred             ccceEEEEECCceeecccccccccccccccceeecCCcCHHHHHHHHHHhcc
Confidence            999999998887                 35667787 99999999987764

>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0

Probab=99.83  E-value=1.6e-20  Score=117.86  Aligned_cols=106  Identities=23%  Similarity=0.423  Sum_probs=86.4

Q ss_pred             cCCCceEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCC--CcEEEEEeCCc-----------
Q 032502           21 FAGGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP--SLMFLLVDVDE-----------   87 (139)
Q Consensus        21 ~~~~~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~-----------   87 (139)
                      ..+..+|++...+.....+.+.. +++++||+||++||++|+.+.+.+.+++++++  ++.++.++++.           
T Consensus        10 ~~g~~~p~~~l~~~~g~~~~l~~-~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~   88 (145)
T 3erw_A           10 KQPAVPAVFLMKTIEGEDISIPN-KGQKTILHFWTSWCPPCKKELPQFQSFYDAHPSDSVKLVTVNLVNSEQNQQVVEDF   88 (145)
T ss_dssp             --CCSCCEEEEECTTSCEEEESC-TTSEEEEEEECSSCHHHHHHHHHHHHHHHHCCCSSEEEEEEECGGGSSCHHHHHHH
T ss_pred             cCCCcCCCceeecCCCCEEeHHH-CCCEEEEEEECCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEccCCcCCHHHHHHH
Confidence            34455555554444344455554 78999999999999999999999999999998  69999998864           


Q ss_pred             --------------chhhhhhCCCcceeEEEEE-eCCeEEEEEeCC-ChHHHHHHH
Q 032502           88 --------------LVEFSTSWDIKATPTFFFL-KDGQQVDKLVGA-NKPELQKKV  127 (139)
Q Consensus        88 --------------~~~~~~~~~v~~~Pt~~~~-~~g~~~~~~~g~-~~~~l~~~i  127 (139)
                                    +..+++.|++.++|+++++ ++|+++.++.|. +.++|.++|
T Consensus        89 ~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l  144 (145)
T 3erw_A           89 IKANKLTFPIVLDSKGELMKEYHIITIPTSFLLNEKGEIEKTKIGPMTAEQLKEWT  144 (145)
T ss_dssp             HHHTTCCSCEEECSSSHHHHHTTCCEESEEEEECTTCCEEEEEESCCCHHHHHHHH
T ss_pred             HHHcCCceeEEEcCchhHHHhcCcCccCeEEEEcCCCcEEEEEcCCcCHHHHHHhh
Confidence                          5578999999999999999 999999999998 888888776

>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP}

Probab=99.83  E-value=1.8e-20  Score=119.08  Aligned_cols=99  Identities=20%  Similarity=0.324  Sum_probs=83.5

Q ss_pred             HHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCC--cEEEEEeCCc-------------------------ch
Q 032502           37 QKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS--LMFLLVDVDE-------------------------LV   89 (139)
Q Consensus        37 ~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~--v~~~~vd~~~-------------------------~~   89 (139)
                      +.+.+...++|++||+||++||++|+.+.+.|.++++++++  +.++.|+++.                         +.
T Consensus        20 ~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~   99 (152)
T 2lrn_A           20 NSVSLNDFKGKYVLVDFWFAGCSWCRKETPYLLKTYNAFKDKGFTIYGVSTDRREEDWKKAIEEDKSYWNQVLLQKDDVK   99 (152)
T ss_dssp             CEEESGGGTTSEEEEEEECTTCTTHHHHHHHHHHHHHHHTTTTEEEEEEECCSCHHHHHHHHHHHTCCSEEEEECHHHHH
T ss_pred             CEEeHHHcCCCEEEEEEECCCChhHHHHHHHHHHHHHHhccCCeEEEEEEccCCHHHHHHHHHHhCCCCeEEecccchhH
Confidence            33444556789999999999999999999999999999874  9999999986                         56


Q ss_pred             hhhhhCCCcceeEEEEE-eCCeEEEEEeCCChHHHHHHHHHHhhccCCC
Q 032502           90 EFSTSWDIKATPTFFFL-KDGQQVDKLVGANKPELQKKVAAAVDSVVPS  137 (139)
Q Consensus        90 ~~~~~~~v~~~Pt~~~~-~~g~~~~~~~g~~~~~l~~~i~~~~~~~~~~  137 (139)
                      .+++.|++.++|+++++ ++|+++.++  .+.+++.+.|+++++.....
T Consensus       100 ~~~~~~~v~~~P~~~lid~~G~i~~~~--~~~~~l~~~l~~l~~~~~~~  146 (152)
T 2lrn_A          100 DVLESYCIVGFPHIILVDPEGKIVAKE--LRGDDLYNTVEKFVNGAKEG  146 (152)
T ss_dssp             HHHHHTTCCSSCEEEEECTTSEEEEEC--CCTTHHHHHHHHHHTSSSSC
T ss_pred             HHHHHhCCCcCCeEEEECCCCeEEEee--CCHHHHHHHHHHHHhhcccc
Confidence            78899999999998888 899998885  35578999999888775543

>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls}

Probab=99.83  E-value=2.9e-20  Score=117.82  Aligned_cols=114  Identities=25%  Similarity=0.510  Sum_probs=89.2

Q ss_pred             CCCceEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCC--cEEEEEeCCcch----------
Q 032502           22 AGGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS--LMFLLVDVDELV----------   89 (139)
Q Consensus        22 ~~~~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~--v~~~~vd~~~~~----------   89 (139)
                      .|..+|++...+ ....+.+...+++++||+||++||++|+.+.+.|.++++++++  +.++.++++...          
T Consensus         5 ~G~~~P~f~l~~-~g~~~~l~~~~gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~   83 (152)
T 3gl3_A            5 KGDKAPDFALPG-KTGVVKLSDKTGSVVYLDFWASWCGPCRQSFPWMNQMQAKYKAKGFQVVAVNLDAKTGDAMKFLAQV   83 (152)
T ss_dssp             TTSBCCCCEEEB-SSSEEEGGGGTTSEEEEEEECTTCTHHHHHHHHHHHHHHHHGGGTEEEEEEECCSSHHHHHHHHHHS
T ss_pred             CCCcCCceEeeC-CCCeEeHHHhCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEECCCCHHHHHHHHHHc
Confidence            344445544433 3344555566799999999999999999999999999999874  899999988654          


Q ss_pred             ------------hhhhhCCCcceeEEEEE-eCCeEEEEEeCC---ChHHHHHHHHHHhhccCC
Q 032502           90 ------------EFSTSWDIKATPTFFFL-KDGQQVDKLVGA---NKPELQKKVAAAVDSVVP  136 (139)
Q Consensus        90 ------------~~~~~~~v~~~Pt~~~~-~~g~~~~~~~g~---~~~~l~~~i~~~~~~~~~  136 (139)
                                  .+++.|++.++|+++++ ++|+++.++.|.   +.++|.++|++++.....
T Consensus        84 ~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~~~l~~~i~~~~~~~~~  146 (152)
T 3gl3_A           84 PAEFTVAFDPKGQTPRLYGVKGMPTSFLIDRNGKVLLQHVGFRPADKEALEQQILAALGGNEG  146 (152)
T ss_dssp             CCCSEEEECTTCHHHHHTTCCSSSEEEEECTTSBEEEEEESCCTTTHHHHHHHHHHHTC----
T ss_pred             CCCCceeECCcchhHHHcCCCCCCeEEEECCCCCEEEEEccCCCcCHHHHHHHHHHHHccccc
Confidence                        57788999999998888 999999999986   457899999988776543

>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens}

Probab=99.83  E-value=9.3e-20  Score=131.58  Aligned_cols=99  Identities=21%  Similarity=0.462  Sum_probs=87.5

Q ss_pred             chhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCC-------CcEEEEEeCCcchhhhhhCCCcceeEE
Q 032502           31 TKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP-------SLMFLLVDVDELVEFSTSWDIKATPTF  103 (139)
Q Consensus        31 ~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~-------~v~~~~vd~~~~~~~~~~~~v~~~Pt~  103 (139)
                      +.++|+..+    .++++++|.||++||++|+.+.|.++++++.+.       ++.|+.||++.+..++++|+|.++||+
T Consensus        11 ~~~~f~~~~----~~~~~vlV~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~v~~~~Vd~~~~~~l~~~~~v~~~Pt~   86 (382)
T 2r2j_A           11 DTENIDEIL----NNADVALVNFYADWCRFSQMLHPIFEEASDVIKEEFPNENQVVFARVDCDQHSDIAQRYRISKYPTL   86 (382)
T ss_dssp             CTTTHHHHH----HHCSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTCC---CCEEEEEEETTTCHHHHHHTTCCEESEE
T ss_pred             CHHHHHHHH----hcCCeEEEEEECCCCHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEEECCccHHHHHhcCCCcCCEE
Confidence            556777655    357899999999999999999999999998862       399999999999999999999999999


Q ss_pred             EEEeCCeEEEE-EeCC-ChHHHHHHHHHHhhc
Q 032502          104 FFLKDGQQVDK-LVGA-NKPELQKKVAAAVDS  133 (139)
Q Consensus       104 ~~~~~g~~~~~-~~g~-~~~~l~~~i~~~~~~  133 (139)
                      ++|++|+.+.+ +.|. +.+.|.++|.+.+..
T Consensus        87 ~~f~~G~~~~~~~~G~~~~~~l~~~i~~~~~~  118 (382)
T 2r2j_A           87 KLFRNGMMMKREYRGQRSVKALADYIRQQKSD  118 (382)
T ss_dssp             EEEETTEEEEEECCSCCSHHHHHHHHHHHHSC
T ss_pred             EEEeCCcEeeeeecCcchHHHHHHHHHHhccC
Confidence            99999998874 7788 899999999998754

>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct}

Probab=99.72  E-value=4.1e-22  Score=118.94  Aligned_cols=97  Identities=38%  Similarity=0.762  Sum_probs=84.5

Q ss_pred             hhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCC-CcEEEEEeCCcchhhhhhCCCcceeEEEEEeCCe
Q 032502           32 KDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP-SLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQ  110 (139)
Q Consensus        32 ~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~-~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~  110 (139)
                      .+++.+.+.   .++++++|+||++||++|+.+.+.++++++.++ ++.++.+|++++..++++|++.++|+++++++|+
T Consensus         8 ~~~~~~~~~---~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~   84 (106)
T 2yj7_A            8 DENFEQEVL---KSDKPVLVDFWAPWCGPCRMIAPIIEELAKEYEGKVKVVKVNVDENPNTAAQYGIRSIPTLLLFKNGQ   84 (106)
Confidence            344444442   457899999999999999999999999999987 5999999999999999999999999999999999


Q ss_pred             EEEEEeCC-ChHHHHHHHHHHh
Q 032502          111 QVDKLVGA-NKPELQKKVAAAV  131 (139)
Q Consensus       111 ~~~~~~g~-~~~~l~~~i~~~~  131 (139)
                      ++.++.|. +.++|.++|++++
T Consensus        85 ~~~~~~g~~~~~~l~~~l~~~l  106 (106)
T 2yj7_A           85 VVDRLVGAQPKEALKERIDKHL  106 (106)
Confidence            99988888 7888988887653

>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii}

Probab=99.82  E-value=5.9e-21  Score=120.28  Aligned_cols=113  Identities=19%  Similarity=0.279  Sum_probs=90.7

Q ss_pred             ccCCCceEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCC--cEEEEEeCCcchh-------
Q 032502           20 EFAGGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS--LMFLLVDVDELVE-------   90 (139)
Q Consensus        20 ~~~~~~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~--v~~~~vd~~~~~~-------   90 (139)
                      ...|..+|++...+.....+.+...++|++||+||++||++|+.+.+.+.++++++++  +.++.|+.+...+       
T Consensus         5 ~~~G~~~p~~~l~~~~g~~~~l~~~~gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~   84 (148)
T 3hcz_A            5 LLLGKKAPNLYMTDTTGTYRYLYDVQAKYTILFFWDSQCGHCQQETPKLYDWWLKNRAKGIQVYAANIERKDEEWLKFIR   84 (148)
T ss_dssp             CCTTSBCCCCCCBCTTSCBCCGGGCCCSEEEEEEECGGGCTTCSHHHHHHHHHHHHGGGTEEEEEEECCSSSHHHHHHHH
T ss_pred             cCCCCcCCceEEecCCCCEEEhHHcCCCEEEEEEECCCCccHHHHHHHHHHHHHHhccCCEEEEEEEecCCHHHHHHHHH
Confidence            3445566666554444455666666899999999999999999999999999999874  9999999987665       


Q ss_pred             ------------------hhhhCCCcceeEEEEE-eCCeEEEEEeCC-ChHHHHHHHHHHhh
Q 032502           91 ------------------FSTSWDIKATPTFFFL-KDGQQVDKLVGA-NKPELQKKVAAAVD  132 (139)
Q Consensus        91 ------------------~~~~~~v~~~Pt~~~~-~~g~~~~~~~g~-~~~~l~~~i~~~~~  132 (139)
                                        +++.|++.++|+++++ ++|+++.++.|. +.+++.+.+.+.+.
T Consensus        85 ~~~~~~~~~~~d~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~~l~~l~~~l~  146 (148)
T 3hcz_A           85 SKKIGGWLNVRDSKNHTDFKITYDIYATPVLYVLDKNKVIIAKRIGYENLDDFLVQYEKSLK  146 (148)
T ss_dssp             HHTCTTSEEEECTTCCCCHHHHHCCCSSCEEEEECTTCBEEEESCCGGGHHHHHHHHHHHHH
T ss_pred             HcCCCCceEEeccccchhHHHhcCcCCCCEEEEECCCCcEEEecCCHHHHHHHHHHHHHHhc
Confidence                              8899999999999999 899999998877 66666666666554

>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B}

Probab=99.82  E-value=1.7e-20  Score=118.99  Aligned_cols=114  Identities=19%  Similarity=0.310  Sum_probs=90.2

Q ss_pred             CceEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCC--CcEEEEEeC----------------
Q 032502           24 GNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP--SLMFLLVDV----------------   85 (139)
Q Consensus        24 ~~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~--~v~~~~vd~----------------   85 (139)
                      ..+|++...+.....+.+...+++++||+||++||++|+.+.+.+.++.++++  ++.++.++.                
T Consensus         6 ~~~p~~~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~   85 (153)
T 2l5o_A            6 KTAPAFSLPDLHGKTVSNADLQGKVTLINFWFPSCPGCVSEMPKIIKTANDYKNKNFQVLAVAQPIDPIESVRQYVKDYG   85 (153)
T ss_dssp             TTCCSCEEECTTSCEEEHHHHTTCEEEEEEECTTCTTHHHHHHHHHHHHHHGGGTTEEEEEEECTTSCHHHHHHHHHHTT
T ss_pred             CCCCCcEeecCCCCCccHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHhccCCeEEEEEecCCCCHHHHHHHHHHcC
Confidence            33444433332233344445578999999999999999999999999999987  488887764                


Q ss_pred             -------CcchhhhhhCCCcceeEEEEE-eCCeEEEEEeCC-ChHHHHHHHHHHhhccCCC
Q 032502           86 -------DELVEFSTSWDIKATPTFFFL-KDGQQVDKLVGA-NKPELQKKVAAAVDSVVPS  137 (139)
Q Consensus        86 -------~~~~~~~~~~~v~~~Pt~~~~-~~g~~~~~~~g~-~~~~l~~~i~~~~~~~~~~  137 (139)
                             +.+..+++.|++.++|+++++ ++|+++.++.|. +.++|.+.|++++....+.
T Consensus        86 ~~~~~~~d~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~ll~~~~~~  146 (153)
T 2l5o_A           86 LPFTVMYDADKAVGQAFGTQVYPTSVLIGKKGEILKTYVGEPDFGKLYQEIDTAWRNSDAE  146 (153)
T ss_dssp             CCSEEEECSSCHHHHHHTCCSSSEEEEECSSSCCCEEEESSCCHHHHHHHHHHHHHCCSSC
T ss_pred             CCceEEcCchHHHHHHcCCCccCeEEEECCCCcEEEEEcCCCCHHHHHHHHHHHHHhhhhc
Confidence                   345678889999999999988 899999999998 9999999999998876543

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A

Probab=99.82  E-value=1.9e-19  Score=133.92  Aligned_cols=104  Identities=18%  Similarity=0.400  Sum_probs=92.5

Q ss_pred             CceEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCC--cEEEEEeCCcchhhhhhCCCccee
Q 032502           24 GNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS--LMFLLVDVDELVEFSTSWDIKATP  101 (139)
Q Consensus        24 ~~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~--v~~~~vd~~~~~~~~~~~~v~~~P  101 (139)
                      ..+..+ +.++|+..+    .++++++|.||++||++|+.+.|.++++++.+++  +.|+.||++.+..++++|+|.++|
T Consensus        14 ~~v~~l-~~~~f~~~~----~~~~~~lv~F~a~wC~~C~~~~p~~~~~a~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~P   88 (504)
T 2b5e_A           14 SAVVKL-ATDSFNEYI----QSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKNITLAQIDCTENQDLCMEHNIPGFP   88 (504)
T ss_dssp             SSCEEC-CTTTHHHHH----TTCSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTTCEEEEEETTTCHHHHHHTTCCSSS
T ss_pred             CCcEEC-CHHHHHHHH----hcCCeEEEEEECCCCHHHHHhHHHHHHHHHHhccCCeEEEEEECCCCHHHHHhcCCCcCC
Confidence            445555 667787766    4689999999999999999999999999999974  999999999999999999999999


Q ss_pred             EEEEEeCCeE--EEEEeCC-ChHHHHHHHHHHhh
Q 032502          102 TFFFLKDGQQ--VDKLVGA-NKPELQKKVAAAVD  132 (139)
Q Consensus       102 t~~~~~~g~~--~~~~~g~-~~~~l~~~i~~~~~  132 (139)
                      |+++|++|+.  ...+.|. +.+.|.++|.+.+.
T Consensus        89 t~~~~~~g~~~~~~~~~G~~~~~~l~~~l~~~~~  122 (504)
T 2b5e_A           89 SLKIFKNSDVNNSIDYEGPRTAEAIVQFMIKQSQ  122 (504)
T ss_dssp             EEEEEETTCTTCEEECCSCCSHHHHHHHHHHHTS
T ss_pred             EEEEEeCCccccceeecCCCCHHHHHHHHHHhcC
Confidence            9999999997  7788888 99999999998764

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A

Probab=99.82  E-value=1.3e-19  Score=122.73  Aligned_cols=100  Identities=21%  Similarity=0.507  Sum_probs=87.5

Q ss_pred             echhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCC----CcEEEEEeCCcchhhhhhCCCcceeEEEE
Q 032502           30 TTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP----SLMFLLVDVDELVEFSTSWDIKATPTFFF  105 (139)
Q Consensus        30 ~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~----~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~  105 (139)
                      .+.++++..+    ..+++++|+||++||++|+.+.|.+.++++.+.    ++.|+.+|++++++++++|+|.++||+++
T Consensus       135 ~~~~~~~~~~----~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~  210 (241)
T 3idv_A          135 LTKENFDEVV----NDADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATAETDLAKRFDVSGYPTLKI  210 (241)
T ss_dssp             CCTTTHHHHH----HHCSEEEEEEECTTCTGGGGTHHHHHHHHHHHHTSSSCCCEEEEETTTCHHHHHHTTCCSSSEEEE
T ss_pred             ccHHHHHHhh----ccCCeEEEEEECCCCHHHHHhHHHHHHHHHHHhccCCcEEEEEEECCCCHHHHHHcCCcccCEEEE
Confidence            4566676666    346899999999999999999999999988863    49999999999999999999999999999


Q ss_pred             EeCCeEEEEEeCC-ChHHHHHHHHHHhhcc
Q 032502          106 LKDGQQVDKLVGA-NKPELQKKVAAAVDSV  134 (139)
Q Consensus       106 ~~~g~~~~~~~g~-~~~~l~~~i~~~~~~~  134 (139)
                      |++|+.+. +.|. +.+.|.++|.+.++..
T Consensus       211 ~~~g~~~~-~~g~~~~~~l~~~l~~~~~~~  239 (241)
T 3idv_A          211 FRKGRPYD-YNGPREKYGIVDYMIEQSGAA  239 (241)
T ss_dssp             EETTEEEE-CCSCCSHHHHHHHHHHHTTCT
T ss_pred             EECCeEEE-ecCCCCHHHHHHHHHhhhCCC
Confidence            99999887 6777 9999999999887643

>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus}

Probab=99.82  E-value=1.2e-20  Score=119.52  Aligned_cols=98  Identities=30%  Similarity=0.550  Sum_probs=84.8

Q ss_pred             HHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCC--CcEEEEEeCCcch-----------------------hhh
Q 032502           38 KMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP--SLMFLLVDVDELV-----------------------EFS   92 (139)
Q Consensus        38 ~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~~~-----------------------~~~   92 (139)
                      .+.+...+++++||+||++||++|+.+.+.+.+++++++  ++.++.|+.+...                       .+.
T Consensus        22 ~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  101 (152)
T 2lja_A           22 TVSLADLKGKYIYIDVWATWCGPCRGELPALKELEEKYAGKDIHFVSLSCDKNKKAWENMVTKDQLKGIQLHMGTDRTFM  101 (152)
T ss_dssp             EEESTTTTTSEEEEEECCSSCCGGGGTHHHHHHHHHHSTTSSEEEEEEECCSCHHHHHHHHHHHTCCSEEEECSSCTHHH
T ss_pred             EeeHHHcCCCEEEEEEECCcCHhHHHHhHHHHHHHHHhccCCeEEEEEEccCcHHHHHHHHHhcCCCCceeecCcchhHH
Confidence            344445578999999999999999999999999999997  4999999988754                       678


Q ss_pred             hhCCCcceeEEEEE-eCCeEEEEEeCC-ChHHHHHHHHHHhhccC
Q 032502           93 TSWDIKATPTFFFL-KDGQQVDKLVGA-NKPELQKKVAAAVDSVV  135 (139)
Q Consensus        93 ~~~~v~~~Pt~~~~-~~g~~~~~~~g~-~~~~l~~~i~~~~~~~~  135 (139)
                      +.|++.++|+++++ ++|+++.+..|. +.++|.++|+++++...
T Consensus       102 ~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~~~~~~  146 (152)
T 2lja_A          102 DAYLINGIPRFILLDRDGKIISANMTRPSDPKTAEKFNELLGLEG  146 (152)
T ss_dssp             HHTTCCSSCCEEEECTTSCEEESSCCCTTCHHHHHHHHHHHTCCS
T ss_pred             HHcCcCCCCEEEEECCCCeEEEccCCCCCHHHHHHHHHHHhcccc
Confidence            89999999999999 599999998887 88999999999876543

>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens}

Probab=99.82  E-value=1.2e-19  Score=123.69  Aligned_cols=106  Identities=22%  Similarity=0.384  Sum_probs=88.1

Q ss_pred             ceEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCC----CcEEEEEeC--CcchhhhhhCCCc
Q 032502           25 NVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP----SLMFLLVDV--DELVEFSTSWDIK   98 (139)
Q Consensus        25 ~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~----~v~~~~vd~--~~~~~~~~~~~v~   98 (139)
                      .+..+ +.++|+..+.   .++++++|+||++||++|+.+.|.++++++.++    ++.|+.+|+  +++..++++|+|.
T Consensus        13 ~v~~l-~~~~f~~~i~---~~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~v~~~~vd~~~~~~~~l~~~~~v~   88 (244)
T 3q6o_A           13 PLTLL-QADTVRGAVL---GSRSAWAVEFFASWCGHCIAFAPTWXALAEDVKAWRPALYLAALDCAEETNSAVCRDFNIP   88 (244)
T ss_dssp             SSEEE-CTTTHHHHHS---SCSSEEEEEEECTTCHHHHHHHHHHHHHHHHTGGGTTTEEEEEEETTSTTTHHHHHHTTCC
T ss_pred             CceeC-ChhhHHHHHh---hCCCeEEEEEECCcCHHHHHHHHHHHHHHHHHHhccCcEEEEEEeCCchhhHHHHHHcCCC
Confidence            44554 5667776663   456999999999999999999999999999987    499999999  6789999999999


Q ss_pred             ceeEEEEEeCC------eEEEEEeCCChHHHHHHHHHHhhccC
Q 032502           99 ATPTFFFLKDG------QQVDKLVGANKPELQKKVAAAVDSVV  135 (139)
Q Consensus        99 ~~Pt~~~~~~g------~~~~~~~g~~~~~l~~~i~~~~~~~~  135 (139)
                      ++||+++|.+|      ..+ .+.|.+.+.|.++|.+++....
T Consensus        89 ~~Pt~~~~~~g~~~~~g~~~-~~~g~~~~~l~~~i~~~l~~~~  130 (244)
T 3q6o_A           89 GFPTVRFFXAFTXNGSGAVF-PVAGADVQTLRERLIDALESHH  130 (244)
T ss_dssp             SSSEEEEECTTCCSSSCEEC-CCTTCCHHHHHHHHHHHHHTCT
T ss_pred             ccCEEEEEeCCCcCCCCeeE-ecCCCCHHHHHHHHHHHHHhcc
Confidence            99999999763      333 4556689999999999987644

>2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal thioredoxin-like domain, N-terminal beta-sheet, fingerprint rigion, oxidoreductase; 1.90A {Escherichia coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A

Probab=99.82  E-value=5e-21  Score=123.42  Aligned_cols=120  Identities=18%  Similarity=0.276  Sum_probs=90.2

Q ss_pred             CCCCCcccCCCceEEeechhH--HHHHHHHHh-hCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeC-----
Q 032502           14 DGEHPVEFAGGNVSLVTTKDI--WDQKMSEAS-KEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDV-----   85 (139)
Q Consensus        14 ~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~~-~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~-----   85 (139)
                      ....+....|..+|++...+.  ....+.+.. .+++++||+||++||++|+.+.|.|.+++++  ++.++.|+.     
T Consensus        16 ~~~~~~~~~G~~~P~f~l~~~~~~g~~~~~~~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~--~v~vv~v~~~~~~~   93 (168)
T 2b1k_A           16 PTNLESALIGKPVPKFRLESLDNPGQFYQADVLTQGKPVLLNVWATWCPTCRAEHQYLNQLSAQ--GIRVVGMNYKDDRQ   93 (168)
T ss_dssp             ---CCCTTTTSBCCCCEEEESSSTTCEEEGGGGCCSSCEEEEEECTTCHHHHHHHHHHHHHHHT--TCCEEEEEESCCHH
T ss_pred             cccccccccCCcCCCeEeecccCCCcEeehhHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHC--CCEEEEEECCCChH
Confidence            333445566777776654433  233333333 4789999999999999999999999999887  788888874     


Q ss_pred             ------------------CcchhhhhhCCCcceeEEEEE-eCCeEEEEEeCC-ChHHHHHHHHHHhhccC
Q 032502           86 ------------------DELVEFSTSWDIKATPTFFFL-KDGQQVDKLVGA-NKPELQKKVAAAVDSVV  135 (139)
Q Consensus        86 ------------------~~~~~~~~~~~v~~~Pt~~~~-~~g~~~~~~~g~-~~~~l~~~i~~~~~~~~  135 (139)
                                        +.+..+++.|++.++|+++++ ++|+++.++.|. +.+.+.+.|.+++....
T Consensus        94 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~l~~~~  163 (168)
T 2b1k_A           94 KAISWLKELGNPYALSLFDGDGMLGLDLGVYGAPETFLIDGNGIIRYRHAGDLNPRVWEEEIKPLWEKYS  163 (168)
T ss_dssp             HHHHHHHHHCCCCSEEEEETTCHHHHHHTCCSSSEEEEECTTSBEEEEEESCCCHHHHHHTTHHHHHHHH
T ss_pred             HHHHHHHHcCCCCceeeECcchHHHHHcCccccCEEEEECCCCeEEEEEeCCCCHHHHHHHHHHHHHHHH
Confidence                              445567889999999965555 899999999997 89999999988887643

>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15}

Probab=99.82  E-value=8e-20  Score=116.79  Aligned_cols=111  Identities=23%  Similarity=0.449  Sum_probs=89.7

Q ss_pred             cccCCCceEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCC--CcEEEEEeCCc---------
Q 032502           19 VEFAGGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP--SLMFLLVDVDE---------   87 (139)
Q Consensus        19 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~---------   87 (139)
                      ....|..+|++...+...+.+.+...++|++||+||++||++|+.+.+.|.+++++++  ++.++.++.+.         
T Consensus        14 ~~~~G~~~p~f~l~~~~g~~~~l~~~~gk~vll~F~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~   93 (158)
T 3hdc_A           14 LVRTGALAPNFKLPTLSGENKSLAQYRGKIVLVNFWASWCPYCRDEMPSMDRLVKSFPKGDLVVLAVNVEKRFPEKYRRA   93 (158)
T ss_dssp             CCCTTSBCCCCEEECTTSCEEESGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHSSTTSEEEEEEECSSSCCGGGGGC
T ss_pred             ccCCCCcCCCceeEcCCCCEEehHHhCCCEEEEEEECCcCHHHHHHHHHHHHHHHHcccCCeEEEEEeCCHHHHHHHHHc
Confidence            3455666676665554455566666789999999999999999999999999999997  69999999987         


Q ss_pred             ----------chhhhhhCCCcceeEEEEE-eCCeEEEEEeCC---ChHHHHHHHHH
Q 032502           88 ----------LVEFSTSWDIKATPTFFFL-KDGQQVDKLVGA---NKPELQKKVAA  129 (139)
Q Consensus        88 ----------~~~~~~~~~v~~~Pt~~~~-~~g~~~~~~~g~---~~~~l~~~i~~  129 (139)
                                ...+.+.|++.++|+++++ ++|+++.++.|.   +.+++.+.+.+
T Consensus        94 ~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~G~~~~~~~~~~~~~~~  149 (158)
T 3hdc_A           94 PVSFNFLSDATGQVQQRYGANRLPDTFIVDRKGIIRQRVTGGIEWDAPKVVSYLKS  149 (158)
T ss_dssp             CCSCEEEECTTSHHHHHTTCCSSSEEEEECTTSBEEEEEESCCCTTSHHHHHHHHT
T ss_pred             CCCceEEECchHHHHHHhCCCCcceEEEEcCCCCEEEEEeCCCccchHHHHHHHHh
Confidence                      6788999999999997777 999999999998   45555555544

>1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold, cytochrome C maturation, atomic resolution oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=99.82  E-value=2e-20  Score=118.91  Aligned_cols=114  Identities=22%  Similarity=0.449  Sum_probs=87.8

Q ss_pred             ccCCCceEEeechhHHH--------HHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCc----
Q 032502           20 EFAGGNVSLVTTKDIWD--------QKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDE----   87 (139)
Q Consensus        20 ~~~~~~~~~i~~~~~~~--------~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~----   87 (139)
                      ...|..+|++...+...        +.+.+....+++++|+||++||++|+.+.+.|.+++++ +++.++.++.+.    
T Consensus         8 ~~~g~~~p~f~l~~~~g~~~~~~~~~~~~l~~~~gk~~ll~f~~~~C~~C~~~~~~l~~l~~~-~~v~~v~v~~~~~~~~   86 (156)
T 1kng_A            8 ALIGRPAPQTALPPLEGLQADNVQVPGLDPAAFKGKVSLVNVWASWCVPCHDEAPLLTELGKD-KRFQLVGINYKDAADN   86 (156)
T ss_dssp             ----CBCCCCCBCCCTTCEETTEECCCBCGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHTTC-TTSEEEEEEESCCHHH
T ss_pred             HHhCCCCCCceeeeccCcccccccCceechHHhCCCEEEEEEEcccCHhHHHHHHHHHHHHhc-CCeEEEEEECCCCHHH
Confidence            34455555554433333        34555556789999999999999999999999999887 569999888643    


Q ss_pred             -------------------chhhhhhCCCcceeEEEEE-eCCeEEEEEeCC-ChHHHHHHHHHHhhcc
Q 032502           88 -------------------LVEFSTSWDIKATPTFFFL-KDGQQVDKLVGA-NKPELQKKVAAAVDSV  134 (139)
Q Consensus        88 -------------------~~~~~~~~~v~~~Pt~~~~-~~g~~~~~~~g~-~~~~l~~~i~~~~~~~  134 (139)
                                         ...+++.|++.++|+++++ ++|+++.++.|. +.+++.++|++++++.
T Consensus        87 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~~id~~G~i~~~~~g~~~~~~l~~~l~~~l~~~  154 (156)
T 1kng_A           87 ARRFLGRYGNPFGRVGVDANGRASIEWGVYGVPETFVVGREGTIVYKLVGPITPDNLRSVLLPQMEKA  154 (156)
T ss_dssp             HHHHHHHHCCCCSEEEEETTSHHHHHTTCCSSCEEEEECTTSBEEEEEESCCCHHHHHHTHHHHHHHH
T ss_pred             HHHHHHHcCCCCceeeeCchhHHHHhcCcCccCeEEEEcCCCCEEEEEeCCCCHHHHHHHHHHHHHHH
Confidence                               4467888999999976666 899999999998 8999999999988764

>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus}

Probab=99.82  E-value=1.5e-20  Score=119.41  Aligned_cols=112  Identities=20%  Similarity=0.329  Sum_probs=89.8

Q ss_pred             CCceEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeC-----------------
Q 032502           23 GGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDV-----------------   85 (139)
Q Consensus        23 ~~~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~-----------------   85 (139)
                      |..+|++...+...+.+.+...+ |++||+||++||++|+.+.+.|.++++++ ++.++.|++                 
T Consensus         8 g~~~p~f~l~~~~g~~~~l~~~~-k~vll~f~~~~C~~C~~~~~~l~~l~~~~-~v~~v~v~~d~~~~~~~~~~~~~~~~   85 (154)
T 3ia1_A            8 GEPLPDFLLLDPKGQPVTPATVS-KPAVIVFWASWCTVCKAEFPGLHRVAEET-GVPFYVISREPRDTREVVLEYMKTYP   85 (154)
T ss_dssp             BEECCCCCEECTTSCEECTTTSC-SSEEEEEECTTCHHHHHHHHHHHHHHHHH-CCCEEEEECCTTCCHHHHHHHHTTCT
T ss_pred             CCcCCceEEECCCCCEechHHcC-CeEEEEEEcccChhHHHHHHHHHHHHHHc-CCeEEEEeCCCcccHHHHHHHHHHcC
Confidence            33444444333333344445456 99999999999999999999999999999 999999999                 


Q ss_pred             ----------CcchhhhhhCCCcceeEEEEE-eCCeEEEEEeCC-ChHHHHHHHHHHhhccCC
Q 032502           86 ----------DELVEFSTSWDIKATPTFFFL-KDGQQVDKLVGA-NKPELQKKVAAAVDSVVP  136 (139)
Q Consensus        86 ----------~~~~~~~~~~~v~~~Pt~~~~-~~g~~~~~~~g~-~~~~l~~~i~~~~~~~~~  136 (139)
                                +....+++.|++.++|+++++ ++|+++.++.|. +.++|.+.|++++.....
T Consensus        86 ~~~~~~~d~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~~~~~~~  148 (154)
T 3ia1_A           86 RFIPLLASDRDRPHEVAARFKVLGQPWTFVVDREGKVVALFAGRAGREALLDALLLAGADLEG  148 (154)
T ss_dssp             TEEECBCCSSCCHHHHHTTSSBCSSCEEEEECTTSEEEEEEESBCCHHHHHHHHHHTTCCC--
T ss_pred             CCcccccccccchHHHHHHhCCCcccEEEEECCCCCEEEEEcCCCCHHHHHHHHHhccCcccc
Confidence                      366778899999999997777 899999999998 999999999998766543

>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B}

Probab=99.82  E-value=7.2e-20  Score=116.14  Aligned_cols=97  Identities=24%  Similarity=0.350  Sum_probs=82.7

Q ss_pred             HHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCC--CcEEEEEeCCc------------------------chhhh
Q 032502           39 MSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP--SLMFLLVDVDE------------------------LVEFS   92 (139)
Q Consensus        39 ~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~------------------------~~~~~   92 (139)
                      +.++..++|++||+||++||++|+.+.|.|.++++++.  ++.++.|++|.                        ...+.
T Consensus        17 ~~l~~~~gk~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (151)
T 3raz_A           17 QSLQSLKAPVRIVNLWATWCGPCRKEMPAMSKWYKAQKKGSVDMVGIALDTSDNIGNFLKQTPVSYPIWRYTGANSRNFM   96 (151)
T ss_dssp             ECGGGCCSSEEEEEEECTTCHHHHHHHHHHHHHHHTSCTTTEEEEEEESSCHHHHHHHHHHSCCSSCEEEECCSCHHHHH
T ss_pred             ecHHHhCCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhccCCeEEEEEECCChHHHHHHHHHcCCCCceEecCccchHHHH
Confidence            44455679999999999999999999999999999985  59999999873                        34567


Q ss_pred             hhCC--CcceeEEEEE-eCCeEEEEEeCC-ChHHHHHHHHHHhhccC
Q 032502           93 TSWD--IKATPTFFFL-KDGQQVDKLVGA-NKPELQKKVAAAVDSVV  135 (139)
Q Consensus        93 ~~~~--v~~~Pt~~~~-~~g~~~~~~~g~-~~~~l~~~i~~~~~~~~  135 (139)
                      +.|+  +.++|+++++ ++|+++.++.|. +.++|.++|+++.....
T Consensus        97 ~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~l~~~~~  143 (151)
T 3raz_A           97 KTYGNTVGVLPFTVVEAPKCGYRQTITGEVNEKSLTDAVKLAHSKCR  143 (151)
T ss_dssp             HTTTCCSCCSSEEEEEETTTTEEEECCSCCCHHHHHHHHHHHHTC--
T ss_pred             HHhCCccCCCCEEEEECCCCcEEEEECCCCCHHHHHHHHHHHHHHhh
Confidence            8899  9999988887 899999999998 99999999999877644

>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15}

Probab=99.81  E-value=4.5e-20  Score=117.17  Aligned_cols=115  Identities=24%  Similarity=0.434  Sum_probs=87.5

Q ss_pred             CCCceEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCC--cEEEEEeCCcc-----------
Q 032502           22 AGGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS--LMFLLVDVDEL-----------   88 (139)
Q Consensus        22 ~~~~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~--v~~~~vd~~~~-----------   88 (139)
                      .|..+|++...+...+.+.+...+++++||+||++||++|+.+.+.+.++.+++++  +.++.++.+..           
T Consensus         4 ~G~~~p~~~l~~~~g~~~~l~~~~gk~vll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~   83 (154)
T 3kcm_A            4 EENPAPDFTLNTLNGEVVKLSDLKGQVVIVNFWATWCPPCREEIPSMMRLNAAMAGKPFRMLCVSIDEGGKVAVEEFFRK   83 (154)
T ss_dssp             TTSBCCCCEEECTTSCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTSSEEEEEEECCTTHHHHHHHHHHH
T ss_pred             CCCCCCCeEEEcCCCCEEehhhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCCeEEEEEEcCCcchHHHHHHHHH
Confidence            34455555444433444555556789999999999999999999999999999974  89999998865           


Q ss_pred             ------------hhhhhhCCCcceeEEEEE-eCCeEEEEEeCC---ChHHHHHHHHHHhhccCC
Q 032502           89 ------------VEFSTSWDIKATPTFFFL-KDGQQVDKLVGA---NKPELQKKVAAAVDSVVP  136 (139)
Q Consensus        89 ------------~~~~~~~~v~~~Pt~~~~-~~g~~~~~~~g~---~~~~l~~~i~~~~~~~~~  136 (139)
                                  ..+.+.|++.++|+++++ ++|+++.++.|.   +.+++.++|+++......
T Consensus        84 ~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~~~l~~~l~~l~~~~~~  147 (154)
T 3kcm_A           84 TGFTLPVLLDADKRVGKLYGTTGVPETFVIDRHGVILKKVVGAMEWDHPEVIAFLNNELSKARE  147 (154)
T ss_dssp             HCCCCCEEECTTCHHHHHHTCCSBCEEEEECTTSBEEEEEESCCCTTSHHHHHHHHTC------
T ss_pred             cCCCeeEEecCchHHHHHhCCCCCCeEEEECCCCcEEEEEcCCCccccHHHHHHHHHHHHHhhh
Confidence                        337788999999976666 899999999887   567899999888766544

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A

Probab=99.81  E-value=3.1e-19  Score=132.04  Aligned_cols=103  Identities=17%  Similarity=0.405  Sum_probs=91.1

Q ss_pred             echhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCC-cEEEEEeCCcchhhhhhCCCcceeEEEEEeC
Q 032502           30 TTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVDELVEFSTSWDIKATPTFFFLKD  108 (139)
Q Consensus        30 ~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~-v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~  108 (139)
                      .+.++|++.+. ....+++++|+||++||++|+.+.|.+.++++.+++ +.|+.||++.+..++++|+|.++||+++|++
T Consensus         6 l~~~~f~~~i~-~~~~~~~~lv~F~a~wC~~C~~~~p~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Ptl~~~~~   84 (481)
T 3f8u_A            6 LTDDNFESRIS-DTGSAGLMLVEFFAPWCGHAKRLAPEYEAAATRLKGIVPLAKVDCTANTNTCNKYGVSGYPTLKIFRD   84 (481)
T ss_dssp             ECTTTHHHHTT-CCSSSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCCEEEEETTTCHHHHHHTTCCEESEEEEEET
T ss_pred             ecHHHHHHHHH-hCCCCCeEEEEEECCCCHHHHHhHHHHHHHHHHhcCceEEEEEECCCCHHHHHhcCCCCCCEEEEEeC
Confidence            36677877772 112338999999999999999999999999999986 9999999999999999999999999999999


Q ss_pred             CeEEEEEeCC-ChHHHHHHHHHHhhc
Q 032502          109 GQQVDKLVGA-NKPELQKKVAAAVDS  133 (139)
Q Consensus       109 g~~~~~~~g~-~~~~l~~~i~~~~~~  133 (139)
                      |+.+..+.|. +.+.|.+++.+.+..
T Consensus        85 g~~~~~~~G~~~~~~l~~~~~~~~~~  110 (481)
T 3f8u_A           85 GEEAGAYDGPRTADGIVSHLKKQAGP  110 (481)
T ss_dssp             TEEEEECCSCSSHHHHHHHHHHHTSC
T ss_pred             CceeeeecCccCHHHHHHHHHhhccc
Confidence            9988999998 999999999988653

>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis}

Probab=99.81  E-value=2.5e-20  Score=117.35  Aligned_cols=111  Identities=19%  Similarity=0.344  Sum_probs=87.4

Q ss_pred             cCCCceEEeechhHHHHHHHHH--hhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhC-C--CcEEEEEeCCc--------
Q 032502           21 FAGGNVSLVTTKDIWDQKMSEA--SKEGKIVIANFSATWCGPCRMIAPFFSELSEKY-P--SLMFLLVDVDE--------   87 (139)
Q Consensus        21 ~~~~~~~~i~~~~~~~~~~~~~--~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~-~--~v~~~~vd~~~--------   87 (139)
                      ..|..+|++...+.....+.+.  ..+++++||+||++||++|+.+.+.+.++++++ +  ++.++.++++.        
T Consensus         6 ~~g~~~p~~~l~~~~g~~~~l~~~~~~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~v~~d~~~~~~~~~   85 (148)
T 3fkf_A            6 TVGKSAPYFSLPNEKGEKLSRSAERFRNRYLLLNFWASWCDPQPEANAELKRLNKEYKKNKNFAMLGISLDIDREAWETA   85 (148)
T ss_dssp             CTTSBCCCCCEEBTTSCEECTTSTTTTTSEEEEEEECGGGCCCHHHHHHHHHHHHHTTTCTTEEEEEEECCSCHHHHHHH
T ss_pred             cCCCcCCCeEeeCCCCCEEeccccccCCcEEEEEEECCCCHHHHHHhHHHHHHHHHhcCCCCeEEEEEECCCCHHHHHHH
Confidence            3444555554433333444444  567899999999999999999999999999999 5  48999998886        


Q ss_pred             -----------------chhhhhhCCCcceeEEEEE-eCCeEEEEEeCCChHHHHHHHHHHhhc
Q 032502           88 -----------------LVEFSTSWDIKATPTFFFL-KDGQQVDKLVGANKPELQKKVAAAVDS  133 (139)
Q Consensus        88 -----------------~~~~~~~~~v~~~Pt~~~~-~~g~~~~~~~g~~~~~l~~~i~~~~~~  133 (139)
                                       +..+++.|++.++|+++++ ++|+++.+..  +.+++.+.|.+++++
T Consensus        86 ~~~~~~~~~~~~d~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~--~~~~l~~~l~~ll~~  147 (148)
T 3fkf_A           86 IKKDTLSWDQVCDFTGLSSETAKQYAILTLPTNILLSPTGKILARDI--QGEALTGKLKELLKT  147 (148)
T ss_dssp             HHHTTCCSEEECCSCGGGCHHHHHTTCCSSSEEEEECTTSBEEEESC--CHHHHHHHHHHHC--
T ss_pred             HHHcCCCceEEEccCCcchHHHHhcCCCCcCEEEEECCCCeEEEecC--CHHHHHHHHHHHHcc
Confidence                             3478899999999999988 8999988755  888899999988753

>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A

Probab=99.81  E-value=7.1e-20  Score=112.02  Aligned_cols=103  Identities=25%  Similarity=0.454  Sum_probs=83.0

Q ss_pred             CceEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCC------CcEEEEEeCCcchhhhhhCCC
Q 032502           24 GNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP------SLMFLLVDVDELVEFSTSWDI   97 (139)
Q Consensus        24 ~~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~------~v~~~~vd~~~~~~~~~~~~v   97 (139)
                      ..+..+ +.++|+..+.   .++++++|+||++||++|+.+.|.++++++.++      ++.|+.+|+++++ +++  +|
T Consensus         7 ~~v~~l-~~~~f~~~v~---~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~vd~~~~~-~~~--~v   79 (121)
T 2djj_A            7 GPVTVV-VAKNYNEIVL---DDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATAND-VPD--EI   79 (121)
T ss_dssp             CSSEEC-CTTTTTTSSS---CTTSCEEEEEECSSCTTHHHHHHHHHHHHHHHTTSSCTTSSEEEEEETTTSC-CSS--CC
T ss_pred             CCeEEe-cccCHHHHhh---cCCCCEEEEEECCCCHhHHHhhHHHHHHHHHHhhcccCCceEEEEEECcccc-ccc--cc
Confidence            345555 3455655442   467999999999999999999999999999986      4999999999876 444  99


Q ss_pred             cceeEEEEEeCCeE--EEEEeCC-ChHHHHHHHHHHhhc
Q 032502           98 KATPTFFFLKDGQQ--VDKLVGA-NKPELQKKVAAAVDS  133 (139)
Q Consensus        98 ~~~Pt~~~~~~g~~--~~~~~g~-~~~~l~~~i~~~~~~  133 (139)
                      .++||+++|.+|..  +.++.|. +.++|.++|.+++..
T Consensus        80 ~~~Pt~~~~~~~~~~~~~~~~G~~~~~~l~~~i~~~~~~  118 (121)
T 2djj_A           80 QGFPTIKLYPAGAKGQPVTYSGSRTVEDLIKFIAENGKY  118 (121)
T ss_dssp             SSSSEEEEECSSCTTSCCCCCCCSCHHHHHHHHHHTSSS
T ss_pred             CcCCeEEEEeCcCCCCceEecCCCCHHHHHHHHHhccCc
Confidence            99999999976643  6677787 899999999988654

>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A

Probab=99.81  E-value=5.2e-21  Score=123.47  Aligned_cols=103  Identities=19%  Similarity=0.428  Sum_probs=83.9

Q ss_pred             HHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCC-CcEEEEEeCCcchh-hhhhCCC--cceeEEEEE-eC
Q 032502           34 IWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP-SLMFLLVDVDELVE-FSTSWDI--KATPTFFFL-KD  108 (139)
Q Consensus        34 ~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~-~v~~~~vd~~~~~~-~~~~~~v--~~~Pt~~~~-~~  108 (139)
                      ++++.+..+..+++++||+||++||++|+.+.|.|.++.+.+. ++.|+.||++.+.. ++..|++  .++||++++ ++
T Consensus        34 ~~~~~~~~~~~~~k~vlv~F~a~WC~~C~~~~p~l~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~Pt~~~~d~~  113 (164)
T 1sen_A           34 TLEDGKKEAAASGLPLMVIIHKSWCGACKALKPKFAESTEISELSHNFVMVNLEDEEEPKDEDFSPDGGYIPRILFLDPS  113 (164)
T ss_dssp             CHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHTCHHHHHHHTTSEEEEEEGGGSCSCGGGCTTCSCSSEEEEECTT
T ss_pred             CHHHHHHHHHhcCCeEEEEEECCCCHHHHHHHHHHHHHHHHhhcCCeEEEEEecCCchHHHHHhcccCCcCCeEEEECCC
Confidence            3445555555779999999999999999999999988766553 47788888888776 7888888  669999999 89


Q ss_pred             CeEEEEEeC-----------CChHHHHHHHHHHhhccCC
Q 032502          109 GQQVDKLVG-----------ANKPELQKKVAAAVDSVVP  136 (139)
Q Consensus       109 g~~~~~~~g-----------~~~~~l~~~i~~~~~~~~~  136 (139)
                      |+++.++.|           .+.++|.+.|++++....+
T Consensus       114 G~~~~~~~G~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~  152 (164)
T 1sen_A          114 GKVHPEIINENGNPSYKYFYVSAEQVVQGMKEAQERLTG  152 (164)
T ss_dssp             SCBCTTCCCTTSCTTSTTCCCSHHHHHHHHHHHHHHHGG
T ss_pred             CCEEEEEeCCCCccchhcccCCHHHHHHHHHHHHHhccH
Confidence            999988777           3788999999988876543

>1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.47.1.1 PDB: 3lef_A

Probab=99.80  E-value=3e-19  Score=115.44  Aligned_cols=86  Identities=12%  Similarity=0.163  Sum_probs=72.5

Q ss_pred             hCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhhhhhCC---CcceeEEEEEeC-CeEEEEEeCCC
Q 032502           44 KEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWD---IKATPTFFFLKD-GQQVDKLVGAN  119 (139)
Q Consensus        44 ~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~---v~~~Pt~~~~~~-g~~~~~~~g~~  119 (139)
                      .++++++|.||++||++|+.+.|.|.++++.++++.|+.+|.|++++++.+|+   +.++||++++++ |+++.++.+ .
T Consensus        52 ~~~k~vvv~F~A~WC~pC~~~~P~l~~l~~~~~~v~~~~v~~d~~~~~~~~~~~~~v~~iPt~i~~~~~G~~~~~~g~-~  130 (167)
T 1z6n_A           52 IERRYRLLVAGEMWCPDCQINLAALDFAQRLQPNIELAIISKGRAEDDLRQRLALERIAIPLVLVLDEEFNLLGRFVE-R  130 (167)
T ss_dssp             CCSCEEEEEECCTTCHHHHHHHHHHHHHHHHCTTEEEEEECHHHHHHHTTTTTTCSSCCSSEEEEECTTCCEEEEEES-S
T ss_pred             hCCCEEEEEEECCCChhHHHHHHHHHHHHHHCCCcEEEEEECCCCHHHHHHHHHcCCCCcCeEEEECCCCCEEEEEcC-C
Confidence            46789999999999999999999999999999899999999999999999997   999999999965 688877744 3


Q ss_pred             hHHHHHHHHHH
Q 032502          120 KPELQKKVAAA  130 (139)
Q Consensus       120 ~~~l~~~i~~~  130 (139)
                      +..+.+.+.++
T Consensus       131 p~~~~~~i~~~  141 (167)
T 1z6n_A          131 PQAVLDGGPQA  141 (167)
T ss_dssp             CHHHHHHCHHH
T ss_pred             CHHHHHhHHHH
Confidence            34444444443

>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron}

Probab=99.80  E-value=1.2e-19  Score=115.00  Aligned_cols=111  Identities=22%  Similarity=0.331  Sum_probs=89.3

Q ss_pred             cCCCceEEeechhHHHHHHHHH--hhCCCEEEEEEeCCCChh--hhhhhHhHHHHHHhC-C--CcEEEEEeCCcch----
Q 032502           21 FAGGNVSLVTTKDIWDQKMSEA--SKEGKIVIANFSATWCGP--CRMIAPFFSELSEKY-P--SLMFLLVDVDELV----   89 (139)
Q Consensus        21 ~~~~~~~~i~~~~~~~~~~~~~--~~~~k~vlv~f~~~~C~~--C~~~~~~l~~~~~~~-~--~v~~~~vd~~~~~----   89 (139)
                      ..|..+|++...+...+.+.+.  ..++|++||+||++||++  |+.+.|.|.++++++ .  ++.++.|+.+..+    
T Consensus         6 ~~G~~~p~f~l~~~~g~~~~l~~~~~~gk~vll~F~a~~C~~v~C~~~~~~l~~l~~~~~~~~~~~~v~v~~d~~~~~~~   85 (150)
T 3fw2_A            6 EIGKYAPFFSLPNAKGEKITRSSDAFKQKSLLINFWASWNDSISQKQSNSELREIYKKYKKNKYIGMLGISLDVDKQQWK   85 (150)
T ss_dssp             STTSBCCCCCEEBTTCCEECTTSTTTTTSEEEEEEECTTCCCHHHHHHHHHHHHHHHHHTTCSSEEEEEEECCSCHHHHH
T ss_pred             cCCCcCCccEeECCCCCEEecchhhhCCCEEEEEEEeCCCCchHHHHHHHHHHHHHHHhccCCCeEEEEEEcCCCHHHHH
Confidence            3455555555444434445555  567999999999999999  999999999999998 4  5999999988653    


Q ss_pred             ---------------------hhhhhCCCcceeEEEEE-eCCeEEEEEeCCChHHHHHHHHHHhhc
Q 032502           90 ---------------------EFSTSWDIKATPTFFFL-KDGQQVDKLVGANKPELQKKVAAAVDS  133 (139)
Q Consensus        90 ---------------------~~~~~~~v~~~Pt~~~~-~~g~~~~~~~g~~~~~l~~~i~~~~~~  133 (139)
                                           .+.+.|++.++|+++++ ++|+++.+..  +.+++.+.|++++++
T Consensus        86 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~--~~~~l~~~l~~ll~~  149 (150)
T 3fw2_A           86 DAIKRDTLDWEQVCDFGGLNSEVAKQYSIYKIPANILLSSDGKILAKNL--RGEELKKKIENIVEE  149 (150)
T ss_dssp             HHHHHTTCCSEEECCSCGGGCHHHHHTTCCSSSEEEEECTTSBEEEESC--CHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCceEEEcCcccchHHHHHcCCCccCeEEEECCCCEEEEccC--CHHHHHHHHHHHHhc
Confidence                                 67889999999999998 8999988754  788899999988865

>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum}

Probab=99.80  E-value=9.5e-20  Score=119.04  Aligned_cols=113  Identities=16%  Similarity=0.280  Sum_probs=90.1

Q ss_pred             cCCCceEEeechhH--HHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCC--c------EEEEEeCCc-ch
Q 032502           21 FAGGNVSLVTTKDI--WDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS--L------MFLLVDVDE-LV   89 (139)
Q Consensus        21 ~~~~~~~~i~~~~~--~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~--v------~~~~vd~~~-~~   89 (139)
                      ..+..+|++...+.  ..+.+.+...++|++||+||++||++|+.+.+.|.++++++++  +      .|+.|+.+. ..
T Consensus        32 ~~g~~~p~f~l~~~~~~g~~~~l~~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~~v~~v~v~~d~~~~  111 (183)
T 3lwa_A           32 ADRQQLPDIGGDSLMEEGTQINLSDFENQVVILNAWGQWCAPCRSESDDLQIIHEELQAAGNGDTPGGTVLGINVRDYSR  111 (183)
T ss_dssp             GGCCCCCCCEEEBSSSTTCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHHHCC---CCSEEEEEEECSCCCH
T ss_pred             ccCCCCCceeccccccCCcEecHHHhCCCEEEEEEECCcCHhHHHHHHHHHHHHHHHHhcCCCccCCcEEEEEECCCCCH
Confidence            34556666665444  4455666667899999999999999999999999999998863  7      999999987 55


Q ss_pred             hhhhhC-------------------------CCcceeEEEEE-eCCeEEEEEeCC-ChHHHHHHHHHHhhc
Q 032502           90 EFSTSW-------------------------DIKATPTFFFL-KDGQQVDKLVGA-NKPELQKKVAAAVDS  133 (139)
Q Consensus        90 ~~~~~~-------------------------~v~~~Pt~~~~-~~g~~~~~~~g~-~~~~l~~~i~~~~~~  133 (139)
                      +..++|                         ++.++|+++++ ++|+++.++.|. +.++|.+.|+++++.
T Consensus       112 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~ll~~  182 (183)
T 3lwa_A          112 DIAQDFVTDNGLDYPSIYDPPFMTAASLGGVPASVIPTTIVLDKQHRPAAVFLREVTSKDVLDVALPLVDE  182 (183)
T ss_dssp             HHHHHHHHHTTCCSCEEECTTCGGGGGTTTCCTTCCSEEEEECTTSCEEEEECSCCCHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHcCCCccEEECCcchHHHHhccCCCCCCCeEEEECCCCcEEEEEcCCCCHHHHHHHHHHHHhc
Confidence            444443                         68899976666 999999999998 999999999999864

>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis}

Probab=99.80  E-value=5.9e-20  Score=115.22  Aligned_cols=108  Identities=22%  Similarity=0.299  Sum_probs=81.3

Q ss_pred             CCceEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHH---HHHhCC--CcEEEEEeCCcchhh------
Q 032502           23 GGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSE---LSEKYP--SLMFLLVDVDELVEF------   91 (139)
Q Consensus        23 ~~~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~---~~~~~~--~v~~~~vd~~~~~~~------   91 (139)
                      |..+|++...+...+.+.+...++|++||+||++||++|+.+.|.+.+   ++++++  ++.++.++.+...+.      
T Consensus         4 G~~~p~f~l~~~~g~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~~~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~   83 (142)
T 3ewl_A            4 GMKAADFTYVTVHGDNSRMSRLKAQYTMLFFYDPDCSNCRKFEKLFAEIPAFVEMVENGTLRVLAIYPDENREEWATKAV   83 (142)
T ss_dssp             TSBCCCCEEECTTCCEEEGGGCCCSEEEEEECCSSCHHHHHHHHHHHTCHHHHHHHHHTSEEEEEEECSSCHHHHHHHHT
T ss_pred             CCcCCCCEEECCCCCEEEhhhcCCCEEEEEEECCCCccHHHHHHHHHHhHHHHHHhccCCeEEEEEEecCCHHHHHHHHH
Confidence            444555544443344455566679999999999999999999998887   777774  599999998865443      


Q ss_pred             ------------------hhhCCCcceeEEEEE-eCCeEEEEEeCCChHHHHHHHHHHhh
Q 032502           92 ------------------STSWDIKATPTFFFL-KDGQQVDKLVGANKPELQKKVAAAVD  132 (139)
Q Consensus        92 ------------------~~~~~v~~~Pt~~~~-~~g~~~~~~~g~~~~~l~~~i~~~~~  132 (139)
                                        .+.|++.++|+++++ ++|+++.+  +.+.+++.++|+++.+
T Consensus        84 ~~~~~~~~~~d~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~--~~~~~~l~~~l~~~~~  141 (142)
T 3ewl_A           84 YMPQGWIVGWNKAGDIRTRQLYDIRATPTIYLLDGRKRVILK--DTSMEQLIDYLATQAG  141 (142)
T ss_dssp             TSCTTCEEEECTTCHHHHTTCSCCCSSSEEEEECTTCBEEEC--SCCHHHHHHHHHC---
T ss_pred             HcCCCcceeeCCccchhhHHHcCCCCCCeEEEECCCCCEEec--CCCHHHHHHHHHHHcc
Confidence                              348999999998888 89998773  4588999998887654

>4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae}

Probab=99.80  E-value=1.7e-19  Score=111.81  Aligned_cols=92  Identities=23%  Similarity=0.382  Sum_probs=78.5

Q ss_pred             HHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCC-CcEEEEEeC----------------------------Ccch
Q 032502           39 MSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP-SLMFLLVDV----------------------------DELV   89 (139)
Q Consensus        39 ~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~-~v~~~~vd~----------------------------~~~~   89 (139)
                      +.+...++|++||+||++||++|+.+.+.+.+++++++ ++.++.++.                            +.+.
T Consensus        15 ~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~   94 (138)
T 4evm_A           15 YRLSDYKGKKVYLKFWASWCSICLASLPDTDEIAKEAGDDYVVLTVVSPGHKGEQSEADFKNWYKGLDYKNLPVLVDPSG   94 (138)
T ss_dssp             EEGGGGTTSEEEEEECCTTCHHHHHHHHHHHHHHHTCTTTEEEEEEECTTSTTCCCHHHHHHHHTTCCCTTCCEEECTTC
T ss_pred             EEHHHhCCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhCCCcEEEEEEcCCCCchhhHHHHHHHHhhcCCCCeeEEECcch
Confidence            33444578999999999999999999999999999987 588888843                            3345


Q ss_pred             hhhhhCCCcceeEEEEE-eCCeEEEEEeCC-ChHHHHHHHHHH
Q 032502           90 EFSTSWDIKATPTFFFL-KDGQQVDKLVGA-NKPELQKKVAAA  130 (139)
Q Consensus        90 ~~~~~~~v~~~Pt~~~~-~~g~~~~~~~g~-~~~~l~~~i~~~  130 (139)
                      .+.+.|++.++|+++++ ++|+++.++.|. +.+++.+.|+++
T Consensus        95 ~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~l  137 (138)
T 4evm_A           95 KLLETYGVRSYPTQAFIDKEGKLVKTHPGFMEKDAILQTLKEL  137 (138)
T ss_dssp             HHHHHTTCCSSSEEEEECTTCCEEEEEESCCCHHHHHHHHHHC
T ss_pred             HHHHHcCcccCCeEEEECCCCcEEEeecCCCcHHHHHHHHHhh
Confidence            68889999999999999 899999999998 889999888764

>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis}

Probab=99.80  E-value=1.2e-19  Score=114.03  Aligned_cols=106  Identities=16%  Similarity=0.143  Sum_probs=82.5

Q ss_pred             cCCCceEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHH---HHHhCC--CcEEEEEeCCcchh-----
Q 032502           21 FAGGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSE---LSEKYP--SLMFLLVDVDELVE-----   90 (139)
Q Consensus        21 ~~~~~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~---~~~~~~--~v~~~~vd~~~~~~-----   90 (139)
                      ..|..+|++...+...+.+.+....++++||+||++||++|+.+.|.|.+   +++++.  ++.++.|+.+...+     
T Consensus         6 ~~G~~ap~f~l~~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~~~~l~~~~~~~~~~vi~i~~d~~~~~~~~~   85 (142)
T 3eur_A            6 RLGTKALNFTYTLDSGVKGTLYQFPAEYTLLFINNPGCHACAEMIEGLKASPVINGFTAAKKLKVLSIYPDEELDEWKKH   85 (142)
T ss_dssp             CTTSBCCCCEEEETTSCEEETTTCCCSEEEEEECCSSSHHHHHHHHHHHHCHHHHHHHHTTSEEEEEEECSSCHHHHHHH
T ss_pred             cCCCccCCcEEEcCCCCEeeHHHcCCCEEEEEEECCCCccHHHHHHHHhhhHHHHHHhccCCeEEEEEEcCCCHHHHHHH
Confidence            44555666554444444455566678999999999999999999999999   888874  59999999986533     


Q ss_pred             -------------------hhhhCCCcceeEEEEE-eCCeEEEEEeCCChHHHHHHHH
Q 032502           91 -------------------FSTSWDIKATPTFFFL-KDGQQVDKLVGANKPELQKKVA  128 (139)
Q Consensus        91 -------------------~~~~~~v~~~Pt~~~~-~~g~~~~~~~g~~~~~l~~~i~  128 (139)
                                         +.+.|++.++|+++++ ++|+++.+..  +.+++.++|+
T Consensus        86 ~~~~~~~~~~~~d~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~--~~~~l~~~l~  141 (142)
T 3eur_A           86 RNDFAKEWTNGYDKELVIKNKNLYDLRAIPTLYLLDKNKTVLLKDA--TLQKVEQYLA  141 (142)
T ss_dssp             GGGSCTTSEEEECTTCHHHHTTCSCCTTCSEEEEECTTCBEEEEEE--CHHHHHHHHH
T ss_pred             HHhcccccccccCccchhhhhhhcCCCcCCeEEEECCCCcEEecCC--CHHHHHHHHh
Confidence                               3778999999998888 8999998765  4577777664

>3ga4_A Dolichyl-diphosphooligosaccharide-protein glycosyltransferase subunit OST6; oxidoreductase, active site loop, redox state, membrane; HET: PG4; 1.30A {Saccharomyces cerevisiae} PDB: 3g7y_A 3g9b_A*

Probab=99.80  E-value=1.6e-18  Score=112.64  Aligned_cols=106  Identities=15%  Similarity=0.228  Sum_probs=85.5

Q ss_pred             ceEEeechhHHHHHHHHHhhCCCEEEEEEeC-------CCChhhhhhhHhHHHHHHhCC------CcEEEEEeCCcchhh
Q 032502           25 NVSLVTTKDIWDQKMSEASKEGKIVIANFSA-------TWCGPCRMIAPFFSELSEKYP------SLMFLLVDVDELVEF   91 (139)
Q Consensus        25 ~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~-------~~C~~C~~~~~~l~~~~~~~~------~v~~~~vd~~~~~~~   91 (139)
                      .+..+ +.++|++.+.  ..++.++||.||+       +||+.|+.+.|.++++++.+.      .+.|+.||+|+++++
T Consensus        19 ~vi~l-t~~nF~~~v~--~~~~~~vvV~F~A~~~~~~~~wCgpCk~l~P~~e~lA~~~~~~~~~~~v~f~kvD~d~~~~l   95 (178)
T 3ga4_A           19 GVITV-TADNYPLLSR--GVPGYFNILYITMRGTNSNGMSCQLCHDFEKTYHAVADVIRSQAPQSLNLFFTVDVNEVPQL   95 (178)
T ss_dssp             SEEEC-CTTTHHHHTT--CCTTCEEEEEEECCSBCTTSCBCHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEETTTCHHH
T ss_pred             CCEEC-CHHHHHHHHc--ccCCCcEEEEEeCCCCCCCCCCChhHHHHHHHHHHHHHHhhhccCCCCEEEEEEECccCHHH
Confidence            34444 6778887653  1246789999999       499999999999999999874      499999999999999


Q ss_pred             hhhCCCcceeEEEEEeCCeEE------------EEE----e-CCChHHHHHHHHHHhhc
Q 032502           92 STSWDIKATPTFFFLKDGQQV------------DKL----V-GANKPELQKKVAAAVDS  133 (139)
Q Consensus        92 ~~~~~v~~~Pt~~~~~~g~~~------------~~~----~-g~~~~~l~~~i~~~~~~  133 (139)
                      +.+|||+++||+++|++|...            ..+    . +.+.+.|.+||.+.++.
T Consensus        96 a~~~~I~siPtl~~F~~g~~~~~~~~~~~~~~~~~y~~~~~~~~~ae~la~fi~~~t~~  154 (178)
T 3ga4_A           96 VKDLKLQNVPHLVVYPPAESNKQSQFEWKTSPFYQYSLVPENAENTLQFGDFLAKILNI  154 (178)
T ss_dssp             HHHTTCCSSCEEEEECCCCGGGGGGCCTTTSCCEEECCCGGGTTCHHHHHHHHHHHHTC
T ss_pred             HHHcCCCCCCEEEEEcCCCCCCccccccccCCcceeecccCCCcCHHHHHHHHHHhcCC
Confidence            999999999999999877422            233    1 34889999999987763

>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein disulfide isomerase, endoplasmic R isomerase; 1.83A {Homo sapiens} SCOP: c.47.1.0 PDB: 2lns_A 2lnt_A

Probab=99.79  E-value=2.4e-20  Score=118.65  Aligned_cols=107  Identities=16%  Similarity=0.212  Sum_probs=78.2

Q ss_pred             EeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHH--hCCCcEEEEEeCC-cchhhhhhCCCcceeEEE
Q 032502           28 LVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSE--KYPSLMFLLVDVD-ELVEFSTSWDIKATPTFF  104 (139)
Q Consensus        28 ~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~--~~~~v~~~~vd~~-~~~~~~~~~~v~~~Pt~~  104 (139)
                      .+....+++..+..+..++|+|+|.||++||++|+.+.|.+.+..+  .+.+..|+.|++| +..+....|++.++||++
T Consensus        26 ~i~W~~~~~~al~~A~~~~KpVlV~F~A~WC~~Ck~m~p~~~~~~~~~~~~~~~fv~V~vD~e~~~~~~~~~v~~~PT~~  105 (151)
T 3ph9_A           26 DITWVQTYEEGLFYAQKSKKPLMVIHHLEDCQYSQALKKVFAQNEEIQEMAQNKFIMLNLMHETTDKNLSPDGQYVPRIM  105 (151)
T ss_dssp             TSCCCSSHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHCHHHHHHHHHTCEEEEESSCCSCGGGCTTCCCSSEEE
T ss_pred             CCcchhCHHHHHHHHHHcCCcEEEEEECCCCHhHHHHHHHHhcCHHHHHHhhcCeEEEEecCCchhhHhhcCCCCCCEEE
Confidence            3455567788888887889999999999999999999998865321  1212345666664 345567899999999999


Q ss_pred             EEe-CCeEEEEEeCC--------C---hHHHHHHHHHHhhcc
Q 032502          105 FLK-DGQQVDKLVGA--------N---KPELQKKVAAAVDSV  134 (139)
Q Consensus       105 ~~~-~g~~~~~~~g~--------~---~~~l~~~i~~~~~~~  134 (139)
                      ++. +|+++.+..|.        .   .+.+.+.+.+++.+.
T Consensus       106 f~~~~G~~v~~~~G~~~~~~~~~~~~~~~~ll~~~~~al~~~  147 (151)
T 3ph9_A          106 FVDPSLTVRADIAGRYSNRLYTYEPRDLPLLIENMKKALRLI  147 (151)
T ss_dssp             EECTTSCBCTTCCCSCTTSTTCCCGGGHHHHHHHHHHHHSCC
T ss_pred             EECCCCCEEEEEeCCcCCcccccchhhHHHHHHHHHHHHHHH
Confidence            996 99999888874        2   344555555555443

>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A

Probab=99.79  E-value=7.9e-19  Score=125.36  Aligned_cols=101  Identities=11%  Similarity=0.206  Sum_probs=86.5

Q ss_pred             ceEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHh-------HHHHHHhCC--CcEEEEEeCCcchhhhhhC
Q 032502           25 NVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPF-------FSELSEKYP--SLMFLLVDVDELVEFSTSW   95 (139)
Q Consensus        25 ~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~-------l~~~~~~~~--~v~~~~vd~~~~~~~~~~~   95 (139)
                      .+..+ +.++|+..+    .++++++|.||++||+ |+.+.|.       ++++++.+.  ++.++.||++++..++++|
T Consensus        12 ~v~~l-~~~~f~~~i----~~~~~~lV~F~a~wC~-c~~~~p~~~~~~~~~~~~a~~~~~~~v~~~~Vd~~~~~~l~~~~   85 (350)
T 1sji_A           12 RVVSL-TEKNFKQVL----KKYDVLCLYYHESVSS-DKVAQKQFQLKEIVLELVAQVLEHKDIGFVMVDAKKEAKLAKKL   85 (350)
T ss_dssp             CCEEE-CHHHHHHHH----TTCSEEEEEEECCSCS-SSTTSHHHHHHHHHHHHHHHHGGGSSEEEEEEETTTTHHHHHHH
T ss_pred             ccEEC-CHHHHHHHH----hhCCeEEEEEECCCCc-chhhCchhhhhhHHHHHHHHHHhhcCcEEEEEeCCCCHHHHHhc
Confidence            34544 567787766    4578999999999999 9999888       899988875  5999999999999999999


Q ss_pred             CCcceeEEEEEeCCeEEEEEeCC-ChHHHHHHHHHHhh
Q 032502           96 DIKATPTFFFLKDGQQVDKLVGA-NKPELQKKVAAAVD  132 (139)
Q Consensus        96 ~v~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~i~~~~~  132 (139)
                      +|.++||+++|++|++ ..+.|. +.+.|.++|.+.+.
T Consensus        86 ~v~~~Pt~~~~~~g~~-~~~~G~~~~~~l~~~i~~~~~  122 (350)
T 1sji_A           86 GFDEEGSLYVLKGDRT-IEFDGEFAADVLVEFLLDLIE  122 (350)
T ss_dssp             TCCSTTEEEEEETTEE-EEECSCCCHHHHHHHHHTTSS
T ss_pred             CCCccceEEEEECCcE-EEecCCCCHHHHHHHHHHhcC
Confidence            9999999999999994 577787 99999999987654

>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis}

Probab=99.79  E-value=4.3e-19  Score=111.57  Aligned_cols=107  Identities=17%  Similarity=0.203  Sum_probs=82.7

Q ss_pred             ccCCCceEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCC--CcEEEEEeCCcch--------
Q 032502           20 EFAGGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP--SLMFLLVDVDELV--------   89 (139)
Q Consensus        20 ~~~~~~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~~~--------   89 (139)
                      ...|..+|++.. +...+.+.++..++|++||+||++||++|+.+.|.|.+++++|+  ++.++.|+.+...        
T Consensus         7 l~~G~~~P~f~l-~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~   85 (143)
T 4fo5_A            7 VNPGDLAPRIEF-LGNDAKASFHNQLGRYTLLNFWAAYDAESRARNVQLANEVNKFGPDKIAMCSISMDEKESIFTETVK   85 (143)
T ss_dssp             SSTTSBCCCCCC------CCCSCCSSCCEEEEEEECTTCHHHHHHHHHHHHHHTTSCTTTEEEEEEECCSCHHHHHHHHH
T ss_pred             cCCcccCCceEE-cCCCCEEEHHHhCCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhCcCCEEEEEEEccCCHHHHHHHHH
Confidence            455667777776 55556677776789999999999999999999999999999996  4999999887432        


Q ss_pred             ------------------hhhhhCCCcceeEEEEE-eCCeEEEEEeCCChHHHHHHHHH
Q 032502           90 ------------------EFSTSWDIKATPTFFFL-KDGQQVDKLVGANKPELQKKVAA  129 (139)
Q Consensus        90 ------------------~~~~~~~v~~~Pt~~~~-~~g~~~~~~~g~~~~~l~~~i~~  129 (139)
                                        .+.+.|++.++|+++++ ++|+++.+  ..+.+++.+.|++
T Consensus        86 ~~~~~~~~~~~d~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~--~~~~~~l~~~l~~  142 (143)
T 4fo5_A           86 IDKLDLSTQFHEGLGKESELYKKYDLRKGFKNFLINDEGVIIAA--NVTPEKLTEILKA  142 (143)
T ss_dssp             HHTCCGGGEEECTTGGGSHHHHHTTGGGCCCEEEECTTSBEEEE--SCCHHHHHHHHTC
T ss_pred             HhCCCCceeeecccccchHHHHHcCCCCCCcEEEECCCCEEEEc--cCCHHHHHHHHHh
Confidence                              45678999999987777 79999887  4456777776653

>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A

Probab=99.78  E-value=2.1e-18  Score=124.00  Aligned_cols=102  Identities=9%  Similarity=0.114  Sum_probs=85.6

Q ss_pred             ceEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhh------HhHHHHHHhCC--CcEEEEEeCCcchhhhhhCC
Q 032502           25 NVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIA------PFFSELSEKYP--SLMFLLVDVDELVEFSTSWD   96 (139)
Q Consensus        25 ~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~------~~l~~~~~~~~--~v~~~~vd~~~~~~~~~~~~   96 (139)
                      .+.. .+.++|++.+    .++++++|.||++||++|....      |.++++++.+.  ++.|+.||+++++.++++|+
T Consensus        14 ~v~~-lt~~~f~~~i----~~~~~vlV~FyApWC~~~~~~~~l~~~~p~~e~~a~~~~~~~v~~~~Vd~~~~~~l~~~~~   88 (367)
T 3us3_A           14 RVIN-VNAKNYKNVF----KKYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKGVGFGLVDSEKDAAVAKKLG   88 (367)
T ss_dssp             CCEE-CCTTTHHHHH----HHCSEEEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEETTTTHHHHHHHT
T ss_pred             ccEE-CCHHHHHHHH----hhCCeEEEEEECCCchhHHHhhhhccccHHHHHHHHHhhcCCceEEEEeCcccHHHHHHcC
Confidence            3444 4677788777    3478999999999999985443      67888888765  49999999999999999999


Q ss_pred             CcceeEEEEEeCCeEEEEEeCC-ChHHHHHHHHHHhh
Q 032502           97 IKATPTFFFLKDGQQVDKLVGA-NKPELQKKVAAAVD  132 (139)
Q Consensus        97 v~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~i~~~~~  132 (139)
                      |.++||+++|++|+++ .+.|. +.+.|.++|.+.+.
T Consensus        89 V~~~PTl~~f~~G~~~-~y~G~~~~~~i~~~i~~~~~  124 (367)
T 3us3_A           89 LTEEDSIYVFKEDEVI-EYDGEFSADTLVEFLLDVLE  124 (367)
T ss_dssp             CCSTTEEEEEETTEEE-ECCSCCSHHHHHHHHHHHHS
T ss_pred             CCcCceEEEEECCcEE-EeCCCCCHHHHHHHHHHhcC
Confidence            9999999999999886 67777 99999999988765

>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix}

Probab=99.78  E-value=2.3e-19  Score=115.24  Aligned_cols=94  Identities=19%  Similarity=0.378  Sum_probs=79.0

Q ss_pred             HHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCC------------------cc-----------
Q 032502           38 KMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVD------------------EL-----------   88 (139)
Q Consensus        38 ~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~------------------~~-----------   88 (139)
                      .+.+...++|++||+||++||++|+.+.+.|.+++++++++.|+.|+++                  ..           
T Consensus        29 ~~~l~~~~gk~~lv~F~~~~C~~C~~~~~~l~~l~~~~~~v~vv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (165)
T 3ha9_A           29 VISLNNVGGDVVILWFMAAWCPSCVYMADLLDRLTEKYREISVIAIDFWTAEALKALGLNKPGYPPPDTPEMFRKFIANY  108 (165)
T ss_dssp             EECGGGCCSSEEEEEEECTTCTTHHHHHHHHHHHHHHCTTEEEEEEECCSHHHHHHHTCCSTTSCCCCCHHHHHHHHHHH
T ss_pred             EeeHHHhCCCEEEEEEECCCCcchhhhHHHHHHHHHHcCCcEEEEEEecccccccccccccccCCCCCCHHHHHHHHHHc
Confidence            3445556789999999999999999999999999999999999999987                  33           


Q ss_pred             -----------hhhhhhCCCcceeEEEEE-eCCeEEEEEeCC-ChHHHHHHHHHHhh
Q 032502           89 -----------VEFSTSWDIKATPTFFFL-KDGQQVDKLVGA-NKPELQKKVAAAVD  132 (139)
Q Consensus        89 -----------~~~~~~~~v~~~Pt~~~~-~~g~~~~~~~g~-~~~~l~~~i~~~~~  132 (139)
                                 ..+.+.|++.++|+++++ ++|+++. .... +.++|.+.|+++++
T Consensus       109 ~~~~~~~~~d~~~~~~~~~v~~~P~~~lid~~G~i~~-~g~~~~~~~l~~~l~~l~~  164 (165)
T 3ha9_A          109 GDPSWIMVMDDGSLVEKFNVRSIDYIVIMDKSSNVLY-AGTTPSLGELESVIKSVQG  164 (165)
T ss_dssp             SCTTSEEEECCSHHHHHTTCCSSSEEEEEETTCCEEE-EEESCCHHHHHHHHHHC--
T ss_pred             CCCCeeEEeChHHHHHHhCCCCceEEEEEcCCCcEEE-eCCCCCHHHHHHHHHHHhc
Confidence                       267889999999999988 8999988 3334 78999999988764

>2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus}

Probab=99.78  E-value=2.9e-19  Score=113.69  Aligned_cols=101  Identities=15%  Similarity=0.243  Sum_probs=78.6

Q ss_pred             CCceEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCC--CcEEEEEeCCcchh----------
Q 032502           23 GGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP--SLMFLLVDVDELVE----------   90 (139)
Q Consensus        23 ~~~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~~~~----------   90 (139)
                      +..+|++...+...+.+.+...++|++||+||++||+.|+...+.|.+++++++  ++.++.|+.+...+          
T Consensus        12 g~~~p~f~l~~~~G~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~vv~i~~d~~~~~~~~~~~~~~   91 (152)
T 2lrt_A           12 EASIIDIQLKDLKGNTRSLTDLKGKVVLIDFTVYNNAMSAAHNLALRELYNKYASQGFEIYQISLDGDEHFWKTSADNLP   91 (152)
T ss_dssp             TTCSCCCCEEBTTSCEECTTTGGGSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEECSCCHHHHHHHHTTCS
T ss_pred             CCCCCCeEEEcCCCCEEeHHHhCCCEEEEEEEcCCChhhHHHHHHHHHHHHHhccCCeEEEEEEccCCHHHHHHHHhCCC
Confidence            334444443333333445555678999999999999999999999999999986  49999999986653          


Q ss_pred             -------------hhhhCCCcceeEEEEE-eCCeEEEEEeCC-ChHHH
Q 032502           91 -------------FSTSWDIKATPTFFFL-KDGQQVDKLVGA-NKPEL  123 (139)
Q Consensus        91 -------------~~~~~~v~~~Pt~~~~-~~g~~~~~~~g~-~~~~l  123 (139)
                                   +.+.|++.++|+++++ ++|+++.++.|. +.++.
T Consensus        92 ~~~~~d~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~e~~  139 (152)
T 2lrt_A           92 WVCVRDANGAYSSYISLYNVTNLPSVFLVNRNNELSARGENIKDLDEA  139 (152)
T ss_dssp             SEEEECSSGGGCHHHHHHTCCSCSEEEEEETTTEEEEETTTCSCHHHH
T ss_pred             ceEEECCCCcchHHHHHcCcccCceEEEECCCCeEEEecCCHHHHHHH
Confidence                         7889999999998888 899999998877 54443

>2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein, structural genomics, riken struc genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.47.1.10 PDB: 2ywo_A

Probab=99.77  E-value=8.6e-19  Score=114.91  Aligned_cols=115  Identities=13%  Similarity=0.169  Sum_probs=89.3

Q ss_pred             CCCceEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCC-cEEEEEeCC--------------
Q 032502           22 AGGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVD--------------   86 (139)
Q Consensus        22 ~~~~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~-v~~~~vd~~--------------   86 (139)
                      .|..++++...+...+.+.+...++|++||+||++||++|+.+.+.|.++++++.+ +.++.|+.+              
T Consensus         9 ~g~~~p~f~l~~~~G~~~~l~~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~v~v~~d~~~~~~~d~~~~~~   88 (188)
T 2cvb_A            9 LESPLIDAELPDPRGGRYRLSQFHEPLLAVVFMCNHCPYVKGSIGELVALAERYRGKVAFVGINANDYEKYPEDAPEKMA   88 (188)
T ss_dssp             TTCBCCCCEEECTTSCEEEGGGCCSSEEEEEEECSSCHHHHTTHHHHHHHHHHTTTTEEEEEEECCCTTTCGGGSHHHHH
T ss_pred             CCCCCCCceeecCCCCEEeHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHhhcCeEEEEEEcCccccccccCHHHHH
Confidence            34445555443333444555666789999999999999999999999999999987 999999883              


Q ss_pred             ---------------cchhhhhhCCCcceeEEEEE-eCCeEEEEEe--------CC-ChHHHHHHHHHHhhccCC
Q 032502           87 ---------------ELVEFSTSWDIKATPTFFFL-KDGQQVDKLV--------GA-NKPELQKKVAAAVDSVVP  136 (139)
Q Consensus        87 ---------------~~~~~~~~~~v~~~Pt~~~~-~~g~~~~~~~--------g~-~~~~l~~~i~~~~~~~~~  136 (139)
                                     .+..+++.|++.++|+++++ ++|+++.+..        |. +.++|.+.|+++++....
T Consensus        89 ~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~g~~~~~~~~~g~~~~~~l~~~i~~ll~~~~~  163 (188)
T 2cvb_A           89 AFAEEHGIFFPYLLDETQEVAKAYRALRTPEVFLFDERRLLRYHGRVNDNPKDPSKVQSHDLEAAIEALLRGEEP  163 (188)
T ss_dssp             HHHHHHTCCSCEEECSSSHHHHHTTCCEESEEEEECTTCBEEEEECSSSCTTCGGGCCCCHHHHHHHHHHTTCCC
T ss_pred             HHHHHhCCCceEEECCcchHHHHcCCCCCCeEEEECCCCcEEEEEecCCccccccccCHHHHHHHHHHHHcCCCC
Confidence                           34567889999999998888 8999988711        22 578999999999876543

>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A

Probab=99.77  E-value=2.6e-19  Score=114.70  Aligned_cols=96  Identities=18%  Similarity=0.251  Sum_probs=81.0

Q ss_pred             HHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCC--CcEEEEEeCC----------------------------cc
Q 032502           39 MSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP--SLMFLLVDVD----------------------------EL   88 (139)
Q Consensus        39 ~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~--~v~~~~vd~~----------------------------~~   88 (139)
                      +.+...+++++||+||++||++|+.+.|.|.++++++.  ++.++.|+.+                            .+
T Consensus        31 ~~~~~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  110 (164)
T 2h30_A           31 ASVYLKKDKPTLIKFWASWCPLCLSELGQAEKWAQDAKFSSANLITVASPGFLHEKKDGEFQKWYAGLNYPKLPVVTDNG  110 (164)
T ss_dssp             GGGGCCTTSCEEEEECCTTCHHHHHHHHHHHHHHTCGGGTTSEEEEEECTTSTTCCCTTHHHHHHTTSCCTTSCEEECTT
T ss_pred             eeHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCcEEEEEEcCCCccccCHHHHHHHHHhCCCCcceEEEcCc
Confidence            44555678999999999999999999999999998863  5777776642                            34


Q ss_pred             hhhhhhCCCcceeEEEEE-eCCeEEEEEeCC-ChHHHHHHHHHHhhcc
Q 032502           89 VEFSTSWDIKATPTFFFL-KDGQQVDKLVGA-NKPELQKKVAAAVDSV  134 (139)
Q Consensus        89 ~~~~~~~~v~~~Pt~~~~-~~g~~~~~~~g~-~~~~l~~~i~~~~~~~  134 (139)
                      ..+++.|+|.++|+++++ ++|+++.++.|. +.++|.++|+++++..
T Consensus       111 ~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~~~~~~  158 (164)
T 2h30_A          111 GTIAQNLNISVYPSWALIGKDGDVQRIVKGSINEAQALALIRNPNADL  158 (164)
T ss_dssp             CHHHHHTTCCSSSEEEEECTTSCEEEEEESCCCHHHHHHHHHCTTCCC
T ss_pred             hHHHHHcCCCccceEEEECCCCcEEEEEcCCCCHHHHHHHHHHHHHHH
Confidence            567889999999999988 899999999998 8999999999887653

>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A

Probab=99.77  E-value=3.2e-18  Score=115.44  Aligned_cols=86  Identities=19%  Similarity=0.281  Sum_probs=77.5

Q ss_pred             CCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhhhhhCCCcceeEEEEEeCCeEEEEEeCC-ChHHHH
Q 032502           46 GKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGA-NKPELQ  124 (139)
Q Consensus        46 ~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~l~  124 (139)
                      ++.+++.||++||++|+.+.|.+++++..++++.++.+|++++++++++|+|.++||+++  +|+ +.++.|. +.++|.
T Consensus       136 ~~~~~v~F~a~wC~~C~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~--~G~-~~~~~G~~~~~~l~  212 (229)
T 2ywm_A          136 IPIEIWVFVTTSCGYCPSAAVMAWDFALANDYITSKVIDASENQDLAEQFQVVGVPKIVI--NKG-VAEFVGAQPENAFL  212 (229)
T ss_dssp             SCEEEEEEECTTCTTHHHHHHHHHHHHHHCTTEEEEEEEGGGCHHHHHHTTCCSSSEEEE--GGG-TEEEESCCCHHHHH
T ss_pred             CCeEEEEEECCCCcchHHHHHHHHHHHHHCCCeEEEEEECCCCHHHHHHcCCcccCEEEE--CCE-EEEeeCCCCHHHHH
Confidence            345588999999999999999999999999889999999999999999999999999998  888 5667888 889999


Q ss_pred             HHHHHHhhcc
Q 032502          125 KKVAAAVDSV  134 (139)
Q Consensus       125 ~~i~~~~~~~  134 (139)
                      ++|.++++..
T Consensus       213 ~~l~~~~~~~  222 (229)
T 2ywm_A          213 GYIMAVYEKL  222 (229)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHhhhh
Confidence            9999987653

>1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=99.77  E-value=1.7e-18  Score=113.25  Aligned_cols=115  Identities=22%  Similarity=0.366  Sum_probs=89.6

Q ss_pred             cCCCceEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCC--CcEEEEEeCCcc-----hhhhh
Q 032502           21 FAGGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP--SLMFLLVDVDEL-----VEFST   93 (139)
Q Consensus        21 ~~~~~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~~-----~~~~~   93 (139)
                      ..+..++++...+...+.+.+...++|++||+||++||++|+.+.+.|.+++++++  ++.++.|+.+..     ..+.+
T Consensus        35 ~~g~~~p~f~l~~~~G~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~~~~~~~~~~~~  114 (186)
T 1jfu_A           35 SAPLKLPDLAFEDADGKPKKLSDFRGKTLLVNLWATWCVPCRKEMPALDELQGKLSGPNFEVVAINIDTRDPEKPKTFLK  114 (186)
T ss_dssp             CSCCBCCCCEEECTTSCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHCBTTEEEEEEECCCSCTTHHHHHHH
T ss_pred             cCCCcCCCcEeEcCCCCEeeHHHcCCCEEEEEEEeCCCHhHHHHHHHHHHHHHHhccCCcEEEEEECCCCCHHHHHHHHH
Confidence            34555566554444445566666789999999999999999999999999999986  599999988764     44566


Q ss_pred             hCCCc-----------------------ceeEEEEE-eCCeEEEEEeCC-C--hHHHHHHHHHHhhccC
Q 032502           94 SWDIK-----------------------ATPTFFFL-KDGQQVDKLVGA-N--KPELQKKVAAAVDSVV  135 (139)
Q Consensus        94 ~~~v~-----------------------~~Pt~~~~-~~g~~~~~~~g~-~--~~~l~~~i~~~~~~~~  135 (139)
                      ++++.                       ++|+++++ ++|+++.++.|. +  .+++.+.|+++++...
T Consensus       115 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~P~~~lid~~G~i~~~~~g~~~~~~~~l~~~l~~ll~~~a  183 (186)
T 1jfu_A          115 EANLTRLGYFNDQKAKVFQDLKAIGRALGMPTSVLVDPQGCEIATIAGPAEWASEDALKLIRAATGKAA  183 (186)
T ss_dssp             HTTCCTTCCEECTTCHHHHHHHTTTCCSSSSEEEEECTTSBEEEEEESCCCTTSHHHHHHHHHHHC---
T ss_pred             HcCCCCCceEECCcchHHHHhccccccCCCCEEEEECCCCCEEEEEecCCccCHHHHHHHHHHHhcccc
Confidence            66663                       89998888 899999999887 3  7899999999987643

>2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus}

Probab=99.77  E-value=9.8e-19  Score=115.22  Aligned_cols=115  Identities=14%  Similarity=0.220  Sum_probs=89.9

Q ss_pred             CCCceEEeech-hHHHHHHHHHhhCCC-EEEEEEeCCCChhhhhhhHhHHHHHHhCC--CcEEEEEeCC-----------
Q 032502           22 AGGNVSLVTTK-DIWDQKMSEASKEGK-IVIANFSATWCGPCRMIAPFFSELSEKYP--SLMFLLVDVD-----------   86 (139)
Q Consensus        22 ~~~~~~~i~~~-~~~~~~~~~~~~~~k-~vlv~f~~~~C~~C~~~~~~l~~~~~~~~--~v~~~~vd~~-----------   86 (139)
                      .|..++++... +...+.+.+...+++ ++||+||++||++|+.+.+.|.+++++++  ++.++.|+.+           
T Consensus        20 ~g~~~p~f~l~~~~~G~~~~l~~~~gk~~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~v~~d~~~~~~~d~~~   99 (196)
T 2ywi_A           20 LGKQAPPFALTNVIDGNVVRLEDVKSDAATVIMFICNHCPFVKHVQHELVRLANDYMPKGVSFVAINSNDAEQYPEDSPE   99 (196)
T ss_dssp             TTCBCCCCEEEETTTCCEEEHHHHCCSSEEEEEECCSSCHHHHHHHHHHHHHHHHHGGGTCEEEEEECSCTTTCGGGSHH
T ss_pred             cCCcCCceeeeecCCCCEEeHHHhCCCCeEEEEEeCCCCccHHHHHHHHHHHHHHHHhCCcEEEEEECCccccccccCHH
Confidence            44455555444 333344555556777 59999999999999999999999999886  4999999984           


Q ss_pred             ------------------cchhhhhhCCCcceeEEEEE-eCCeEEEE---------EeCC-ChHHHHHHHHHHhhccCC
Q 032502           87 ------------------ELVEFSTSWDIKATPTFFFL-KDGQQVDK---------LVGA-NKPELQKKVAAAVDSVVP  136 (139)
Q Consensus        87 ------------------~~~~~~~~~~v~~~Pt~~~~-~~g~~~~~---------~~g~-~~~~l~~~i~~~~~~~~~  136 (139)
                                        .+..+++.|++.++|+++++ ++|+++.+         +.|. +.++|.+.|+++++....
T Consensus       100 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~~~g~~~~~~l~~~i~~ll~~~~~  178 (196)
T 2ywi_A          100 NMKKVAEELGYPFPYLYDETQEVAKAYDAACTPDFYIFDRDLKCVYRGQLDDSRPNNGIPVTGESIRAALDALLEGRPV  178 (196)
T ss_dssp             HHHHHHHHHTCCSCEEECSSCHHHHHHTCCEESEEEEEETTCBEEEEECSSSCCTTTCCCCCCHHHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHcCCCceEEECCchHHHHHhCCCCCCeEEEEcCCCeEEEccccCcccccccCccCHHHHHHHHHHHHcCCCC
Confidence                              34567889999999998888 89999988         3466 889999999999876543

>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A*

Probab=99.77  E-value=4.3e-18  Score=127.00  Aligned_cols=107  Identities=21%  Similarity=0.342  Sum_probs=89.5

Q ss_pred             ceEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCC----cEEEEEeCC--cchhhhhhCCCc
Q 032502           25 NVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS----LMFLLVDVD--ELVEFSTSWDIK   98 (139)
Q Consensus        25 ~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~----v~~~~vd~~--~~~~~~~~~~v~   98 (139)
                      .+..+ +.++|+..+.   .++++++|+||++||++|+.+.|.++++++++.+    +.|+.||++  ++.+++++|+|.
T Consensus        13 ~V~~L-t~~~f~~~v~---~~~k~vlV~FyA~WC~pCk~~~P~l~~la~~~~~~~~~v~~~~VD~d~d~~~~l~~~~~V~   88 (519)
T 3t58_A           13 PLTLL-DADSVRPTVL---GSSSAWAVEFFASWCGHAIAFAPTWKELANDVKDWRPALNLAVLDCAEETNSAVCREFNIA   88 (519)
T ss_dssp             SSEEE-CTTTHHHHHS---SCSSEEEEEEECTTSHHHHHHHHHHHHHHHHHGGGTTTEEEEEEETTSGGGHHHHHHTTCC
T ss_pred             CcEEC-ChHHHHHHHH---hCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhhCcCCcEEEEEEECCccccHHHHHHcCCc
Confidence            44554 5667776663   4579999999999999999999999999999864    999999995  589999999999


Q ss_pred             ceeEEEEEe----CCeEEEEEeCC-ChHHHHHHHHHHhhccC
Q 032502           99 ATPTFFFLK----DGQQVDKLVGA-NKPELQKKVAAAVDSVV  135 (139)
Q Consensus        99 ~~Pt~~~~~----~g~~~~~~~g~-~~~~l~~~i~~~~~~~~  135 (139)
                      ++||+++|.    +|+.+....|. +.+.|.++|.+++....
T Consensus        89 ~~PTl~~f~~g~~~G~~~~~~~g~~~~~~L~~~l~~~l~~~~  130 (519)
T 3t58_A           89 GFPTVRFFQAFTKNGSGATLPGAGANVQTLRMRLIDALESHR  130 (519)
T ss_dssp             SBSEEEEECTTCCSCCCEEECCSSCCHHHHHHHHHHHHTTCC
T ss_pred             ccCEEEEEcCcccCCCceeEecCCCCHHHHHHHHHHHHhhcc
Confidence            999999997    56666666666 99999999999987644

>2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB struct genomics consortium, TBSGC, unknown function; 1.90A {Mycobacterium tuberculosis}

Probab=99.77  E-value=3e-18  Score=122.36  Aligned_cols=116  Identities=16%  Similarity=0.185  Sum_probs=95.0

Q ss_pred             ccCCCceEEee-----chhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCC--CcEEEEEeCCc-----
Q 032502           20 EFAGGNVSLVT-----TKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP--SLMFLLVDVDE-----   87 (139)
Q Consensus        20 ~~~~~~~~~i~-----~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~-----   87 (139)
                      ...+..+|++.     ..+...+.+.+...++|++||+||++||++|+.+.|.|.+++++++  ++.++.|+++.     
T Consensus        51 l~vG~~aPdF~~~~~wL~d~dG~~vsLsdl~GK~vLl~F~atwC~~C~~~~p~L~~l~~~~~~~~v~vi~Vs~d~~~~~d  130 (352)
T 2hyx_A           51 LESCGTAPDLKGITGWLNTPGNKPIDLKSLRGKVVLIDFWAYSCINCQRAIPHVVGWYQAYKDSGLAVIGVHTPEYAFEK  130 (352)
T ss_dssp             CCCCCBCCCCCSCCEEESSGGGCCCCGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEECCSSGGGG
T ss_pred             cCCCCcCCCccccccccCCCCCCEEcHHHhCCCEEEEEEECCCChhHHHHHHHHHHHHHHhhcCCeEEEEEECCcccccC
Confidence            44566777776     3333344566666789999999999999999999999999999986  49999998642     


Q ss_pred             ----------------------chhhhhhCCCcceeEEEEE-eCCeEEEEEeCC-ChHHHHHHHHHHhhccC
Q 032502           88 ----------------------LVEFSTSWDIKATPTFFFL-KDGQQVDKLVGA-NKPELQKKVAAAVDSVV  135 (139)
Q Consensus        88 ----------------------~~~~~~~~~v~~~Pt~~~~-~~g~~~~~~~g~-~~~~l~~~i~~~~~~~~  135 (139)
                                            +..+++.|+|.++|+++++ ++|+++.++.|. +.+++.+.|++++....
T Consensus       131 ~~~~~~~~~~~~~l~fpv~~D~~~~l~~~ygV~~~Pt~~lID~~G~Iv~~~~G~~~~~~l~~~I~~lL~e~~  202 (352)
T 2hyx_A          131 VPGNVAKGAANLGISYPIALDNNYATWTNYRNRYWPAEYLIDATGTVRHIKFGEGDYNVTETLVRQLLNDAK  202 (352)
T ss_dssp             CHHHHHHHHHHHTCCSCEEECTTSHHHHHTTCCEESEEEEECTTSBEEEEEESBCCHHHHHHHHHHHHHHHS
T ss_pred             CHHHHHHHHHHcCCCccEEeCCcHHHHHHcCCCccCEEEEEeCCCeEEEEEcCCCCHHHHHHHHHHHHhhcc
Confidence                                  3467889999999998888 999999999998 89999999999987653

>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}

Probab=99.77  E-value=8.2e-18  Score=114.73  Aligned_cols=85  Identities=16%  Similarity=0.329  Sum_probs=77.2

Q ss_pred             CCCEEEEEEeCCCChhhhhhhHhHHHHHHhC-----CCcEEEEEeCCcchhhhhhCCCcceeEEEEEeCCeEEEEEeCC-
Q 032502           45 EGKIVIANFSATWCGPCRMIAPFFSELSEKY-----PSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGA-  118 (139)
Q Consensus        45 ~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~-----~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-  118 (139)
                      .++++++.||++||++|+.+.|.+++++..+     +++.+..+|++.+++++++|+|.++||+++  +|+++  +.|. 
T Consensus       137 ~~~~~vv~F~a~wC~~C~~~~p~l~~la~~~~~~~~~~v~~~~vd~~~~~~~~~~~~V~~vPt~~i--~G~~~--~~G~~  212 (243)
T 2hls_A          137 KGRVHIETIITPSCPYCPYAVLLAHMFAYEAWKQGNPVILSEAVEAYENPDIADKYGVMSVPSIAI--NGYLV--FVGVP  212 (243)
T ss_dssp             CSCEEEEEEECSSCSSHHHHHHHHHHHHHHHHHTTCCCEEEEEEETTTCHHHHHHTTCCSSSEEEE--TTEEE--EESCC
T ss_pred             CCCcEEEEEECCCCCCcHHHHHHHHHHHHHcccccCCcEEEEEEECccCHHHHHHcCCeeeCeEEE--CCEEE--EeCCC
Confidence            4678899999999999999999999999888     679999999999999999999999999988  88865  6687 


Q ss_pred             ChHHHHHHHHHHhhc
Q 032502          119 NKPELQKKVAAAVDS  133 (139)
Q Consensus       119 ~~~~l~~~i~~~~~~  133 (139)
                      +.++|.++|.+.++.
T Consensus       213 ~~~~l~~~l~~~~~~  227 (243)
T 2hls_A          213 YEEDFLDYVKSAAEG  227 (243)
T ss_dssp             CHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHhhc
Confidence            899999999998765

>3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide formation, redox partner, oxidoreductase; 1.66A {Synechococcus SP}

Probab=99.76  E-value=7.7e-19  Score=105.59  Aligned_cols=82  Identities=18%  Similarity=0.341  Sum_probs=64.6

Q ss_pred             HHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCC----cchhhhhhCCCcceeEEEEEeCCeEEEE
Q 032502           39 MSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVD----ELVEFSTSWDIKATPTFFFLKDGQQVDK  114 (139)
Q Consensus        39 ~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~----~~~~~~~~~~v~~~Pt~~~~~~g~~~~~  114 (139)
                      +.++...+++++|.||++||++|+.+.|.|+++++.++   ++.++.+    ++++++++|+|.++||+++  +|+.   
T Consensus         5 ~~la~~~~k~~vV~F~A~WC~~C~~~~p~~~~~a~~~~---~v~~~~~~~~~~~~~l~~~~~V~~~PT~~i--~G~~---   76 (106)
T 3kp8_A            5 VGLAAHLRQIGGTMYGAYWCPHCQDQKELFGAAFDQVP---YVECSPNGPGTPQAQECTEAGITSYPTWII--NGRT---   76 (106)
T ss_dssp             HHHHHHHHHHTCEEEECTTCHHHHHHHHHHGGGGGGSC---EEESCTTCTTSCCCHHHHHTTCCSSSEEEE--TTEE---
T ss_pred             hHHHHhcCCCEEEEEECCCCHHHHHHHHHHHHHHHhCC---EEEEecccccchhHHHHHHcCCeEeCEEEE--CCEE---
Confidence            33444456788999999999999999999999988775   3333332    6788999999999999877  8874   


Q ss_pred             EeCC-ChHHHHHHHH
Q 032502          115 LVGA-NKPELQKKVA  128 (139)
Q Consensus       115 ~~g~-~~~~l~~~i~  128 (139)
                      +.|. +.+.|.+++.
T Consensus        77 ~~G~~~~~~l~~~~~   91 (106)
T 3kp8_A           77 YTGVRSLEALAVASG   91 (106)
T ss_dssp             EESCCCHHHHHHHHT
T ss_pred             ecCCCCHHHHHHHhC
Confidence            6688 8888887764

>2djk_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp2_A

Probab=99.76  E-value=7.6e-18  Score=105.02  Aligned_cols=98  Identities=13%  Similarity=0.152  Sum_probs=84.6

Q ss_pred             chhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCC-cEEEEEeCCcchhhhhhCCCcc--eeEEEEEe
Q 032502           31 TKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVDELVEFSTSWDIKA--TPTFFFLK  107 (139)
Q Consensus        31 ~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~-v~~~~vd~~~~~~~~~~~~v~~--~Pt~~~~~  107 (139)
                      +.++|++.+    .++.++++.||++ |+.|+.+.|.|++++++|.+ +.|+.+|.++++.++..|||++  +||+++++
T Consensus        12 t~~~f~~~~----~~~~pv~v~f~a~-~~~c~~~~p~l~~~A~~~~gk~~f~~vd~d~~~~~a~~~gi~~~~iPtl~i~~   86 (133)
T 2djk_A           12 GPETYSDYM----SAGIPLAYIFAET-AEERKELSDKLKPIAEAQRGVINFGTIDAKAFGAHAGNLNLKTDKFPAFAIQE   86 (133)
T ss_dssp             CHHHHHHHH----HTTSCEEEEECSC-SSSHHHHHHHHHHHHHSSTTTSEEEEECTTTTGGGTTTTTCCSSSSSEEEEEC
T ss_pred             ChHHHHHHh----cCCCCEEEEEecC-hhhHHHHHHHHHHHHHHhCCeEEEEEEchHHhHHHHHHcCCCcccCCEEEEEe
Confidence            556676554    4578999999999 89999999999999999975 9999999999999999999999  99999997


Q ss_pred             C--CeEEEEEe--CC-ChHHHHHHHHHHhhcc
Q 032502          108 D--GQQVDKLV--GA-NKPELQKKVAAAVDSV  134 (139)
Q Consensus       108 ~--g~~~~~~~--g~-~~~~l~~~i~~~~~~~  134 (139)
                      +  |+. .+..  |. +.+.|.++|+++++..
T Consensus        87 ~~~g~~-~~~~~~g~~~~~~l~~fi~~~l~Gk  117 (133)
T 2djk_A           87 VAKNQK-FPFDQEKEITFEAIKAFVDDFVAGK  117 (133)
T ss_dssp             TTTCCB-CCCCSSSCCCHHHHHHHHHHHHHTC
T ss_pred             cCcCcc-cCCCCccccCHHHHHHHHHHHHcCC
Confidence            6  776 4554  77 8999999999988653

>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A

Probab=99.76  E-value=8.7e-18  Score=120.20  Aligned_cols=108  Identities=21%  Similarity=0.423  Sum_probs=87.6

Q ss_pred             CcccCCCceEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCC---cEEEEEeCCcchhhhhh
Q 032502           18 PVEFAGGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS---LMFLLVDVDELVEFSTS   94 (139)
Q Consensus        18 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~---v~~~~vd~~~~~~~~~~   94 (139)
                      |..+....+..+ +.++++..+.   .++++++|+||++||++|+.+.|.+.++++.+++   +.++.+|++.+.  +++
T Consensus       243 p~~~~~~~v~~l-~~~~f~~~~~---~~~k~~lv~f~a~wC~~C~~~~p~~~~la~~~~~~~~v~~~~vd~~~~~--~~~  316 (361)
T 3uem_A          243 PEDWDKQPVKVL-VGKNFEDVAF---DEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDSTANE--VEA  316 (361)
T ss_dssp             CTTTTTSSSEEE-CTTTHHHHHT---CTTCEEEEEEECTTCHHHHHHHHHHHHHHHHTTTCSSEEEEEEETTTCB--CSS
T ss_pred             CcccccCCcEEe-ecCchhhhcc---cCCCcEEEEEecCcCHhHHHHHHHHHHHHHHhccCCcEEEEEEECCccc--hhh
Confidence            333345566665 5566766652   4589999999999999999999999999999874   899999999877  689


Q ss_pred             CCCcceeEEEEEeCC--eEEEEEeCC-ChHHHHHHHHHHh
Q 032502           95 WDIKATPTFFFLKDG--QQVDKLVGA-NKPELQKKVAAAV  131 (139)
Q Consensus        95 ~~v~~~Pt~~~~~~g--~~~~~~~g~-~~~~l~~~i~~~~  131 (139)
                      |+|.++||+++|.+|  +...++.|. +.+.|.++|.+..
T Consensus       317 ~~v~~~Pt~~~~~~~~~~~~~~~~G~~~~~~l~~~l~~~~  356 (361)
T 3uem_A          317 VKVHSFPTLKFFPASADRTVIDYNGERTLDGFKKFLESGG  356 (361)
T ss_dssp             CCCCSSSEEEEECSSSSCCCEECCSCSSHHHHHHHHTTTS
T ss_pred             cCCcccCeEEEEECCCCcceeEecCCCCHHHHHHHHHhcC
Confidence            999999999999544  667788888 9999999887653

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A

Probab=99.75  E-value=1.3e-17  Score=123.26  Aligned_cols=106  Identities=22%  Similarity=0.511  Sum_probs=88.9

Q ss_pred             CceEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCC---cEEEEEeCCcchhhhhhCCCcce
Q 032502           24 GNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS---LMFLLVDVDELVEFSTSWDIKAT  100 (139)
Q Consensus        24 ~~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~---v~~~~vd~~~~~~~~~~~~v~~~  100 (139)
                      ..+.. .+.++++..+.   .++++++|+||++||++|+.+.|.+.++++.+++   +.++.+|++.+ +++.+|+|.++
T Consensus       352 ~~v~~-~~~~~~~~~~~---~~~k~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~~~v~~~~id~~~~-~~~~~~~v~~~  426 (481)
T 3f8u_A          352 GPVKV-VVAENFDEIVN---NENKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDATAN-DVPSPYEVRGF  426 (481)
T ss_dssp             SSSEE-ECTTTHHHHHT---CTTCEEEEEEECTTBHHHHHHHHHHHHHHHHTTTCSSEEEEEEETTSS-CCCTTCCCCSS
T ss_pred             CCeEE-ecccCHHHHhh---cCCCcEEEEEecCcChhHHHhhHHHHHHHHHhccCCCEEEEEEECCch-hhHhhCCCccc
Confidence            34444 45667776663   3589999999999999999999999999999864   99999999988 78899999999


Q ss_pred             eEEEEEeCCeE--EEEEeCC-ChHHHHHHHHHHhhcc
Q 032502          101 PTFFFLKDGQQ--VDKLVGA-NKPELQKKVAAAVDSV  134 (139)
Q Consensus       101 Pt~~~~~~g~~--~~~~~g~-~~~~l~~~i~~~~~~~  134 (139)
                      ||++++.+|+.  ..++.|. +.+.|.++|.+.+...
T Consensus       427 Pt~~~~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~~~  463 (481)
T 3f8u_A          427 PTIYFSPANKKLNPKKYEGGRELSDFISYLQREATNP  463 (481)
T ss_dssp             SEEEEECTTCTTSCEECCSCCSHHHHHHHHHHHCSSC
T ss_pred             CEEEEEeCCCeEeeeEeCCCCCHHHHHHHHHHhcCCc
Confidence            99999977765  5677788 9999999999986643

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=99.75  E-value=5.1e-18  Score=131.84  Aligned_cols=101  Identities=17%  Similarity=0.272  Sum_probs=83.1

Q ss_pred             EeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCC-cEEEEEeCCcchhhhhhCCCcceeEEEEE
Q 032502           28 LVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVDELVEFSTSWDIKATPTFFFL  106 (139)
Q Consensus        28 ~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~-v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~  106 (139)
                      ...+.++|+..+    .++++++|+||++||++|+.+.|.++++++.+.+ +.|+.||+++++.++++|+|.++||+++|
T Consensus       119 ~~l~~~~f~~~i----~~~~~~lv~Fya~wC~~C~~~~p~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~  194 (780)
T 3apo_A          119 ITLERREFDAAV----NSGELWFVNFYSPGSSHSHDLAPTWREFAKEVDGLLRIGAVNCGDDRMLCRMKGVNSYPSLFIF  194 (780)
T ss_dssp             EECCHHHHHHHH----TSSSCEEEEEECSSCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTCSSCC--------CEEEEE
T ss_pred             eeechHhHHhhh----cCCCcEEEEEeCCCCcchhHhhHHHHHHHHHhcCceEEEEEeCCCcHHHHHHcCCceeeeEEEE
Confidence            334677788777    5689999999999999999999999999999875 99999999999999999999999999999


Q ss_pred             eCCeEEEEEeCC-ChHHHHHHHHHHhh
Q 032502          107 KDGQQVDKLVGA-NKPELQKKVAAAVD  132 (139)
Q Consensus       107 ~~g~~~~~~~g~-~~~~l~~~i~~~~~  132 (139)
                      ++|+.+.++.|. +.+.|.++|.+.+.
T Consensus       195 ~~g~~~~~~~G~~~~~~l~~~l~~~~~  221 (780)
T 3apo_A          195 RSGMAAVKYNGDRSKESLVAFAMQHVR  221 (780)
T ss_dssp             CTTSCCEECCSCSCHHHHHHHHHTTSC
T ss_pred             eCCcEeeEecCCCCHHHHHHHHHHhch
Confidence            999988889998 89999999987654

>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A

Probab=99.75  E-value=1.3e-17  Score=112.07  Aligned_cols=89  Identities=22%  Similarity=0.356  Sum_probs=79.0

Q ss_pred             hCCCEEEEEEeCC-CChhhhhhhHhHHHHHHhCCCcEEEEEeCCc--chhhhhhCCCcceeEEEEEeCCeEE-EEEeCC-
Q 032502           44 KEGKIVIANFSAT-WCGPCRMIAPFFSELSEKYPSLMFLLVDVDE--LVEFSTSWDIKATPTFFFLKDGQQV-DKLVGA-  118 (139)
Q Consensus        44 ~~~k~vlv~f~~~-~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~--~~~~~~~~~v~~~Pt~~~~~~g~~~-~~~~g~-  118 (139)
                      .++++++++||++ ||++|+.+.|.++++++..+++.|+.+|+++  +++++++|+|.++||++++++|+.. .++.|. 
T Consensus        20 ~~~~v~lv~f~~~~~C~~C~~~~~~~~~la~~~~~v~~~~vd~~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~~G~~   99 (226)
T 1a8l_A           20 MVNPVKLIVFVRKDHCQYCDQLKQLVQELSELTDKLSYEIVDFDTPEGKELAKRYRIDRAPATTITQDGKDFGVRYFGLP   99 (226)
T ss_dssp             CCSCEEEEEEECSSSCTTHHHHHHHHHHHHTTCTTEEEEEEETTSHHHHHHHHHTTCCSSSEEEEEETTBCCSEEEESCC
T ss_pred             cCCCeEEEEEecCCCCchhHHHHHHHHHHHhhCCceEEEEEeCCCcccHHHHHHcCCCcCceEEEEcCCceeeEEEeccC
Confidence            3467888999999 9999999999999999877779999999999  9999999999999999999998765 677787 


Q ss_pred             ChHHHHHHHHHHhh
Q 032502          119 NKPELQKKVAAAVD  132 (139)
Q Consensus       119 ~~~~l~~~i~~~~~  132 (139)
                      +...+..++..++.
T Consensus       100 ~~~~l~~~l~~~l~  113 (226)
T 1a8l_A          100 AGHEFAAFLEDIVD  113 (226)
T ss_dssp             CTTHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHh
Confidence            78888888888764

>2ls5_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, NEW structural genomics research consortium; NMR {Bacteroides thetaiotaomicron}

Probab=99.60  E-value=1.2e-19  Score=115.99  Aligned_cols=113  Identities=22%  Similarity=0.320  Sum_probs=87.6

Q ss_pred             cCCCceEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHH-HHHhCC---CcEEEEEeCCcchhhhh---
Q 032502           21 FAGGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSE-LSEKYP---SLMFLLVDVDELVEFST---   93 (139)
Q Consensus        21 ~~~~~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~-~~~~~~---~v~~~~vd~~~~~~~~~---   93 (139)
                      ..|..+|++...+...+.+.+...++|++||+||++||++|+.+.+.|.+ +.+++.   ++.++.|+.+...+..+   
T Consensus         8 ~~g~~~p~f~l~~~~g~~~~l~~~~gk~vll~f~a~~C~~C~~~~~~l~~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~   87 (159)
T 2ls5_A            8 RIGEMAPDFTITLTDGKQVTLSSLRGKVVMLQFTASWCGVCRKEMPFIEKDIWLKHKDNADFALIGIDRDEPLEKVLAFA   87 (159)
Confidence            45566777766666666777777789999999999999999999999998 877775   58888888876544333   


Q ss_pred             -------------------hCC--CcceeEEEEE-eCCeEEEEEeCCChHHHHHHHHHHhhc
Q 032502           94 -------------------SWD--IKATPTFFFL-KDGQQVDKLVGANKPELQKKVAAAVDS  133 (139)
Q Consensus        94 -------------------~~~--v~~~Pt~~~~-~~g~~~~~~~g~~~~~l~~~i~~~~~~  133 (139)
                                         .|+  +.++|+++++ ++|+++.++.|.+.+++.++|+++.+.
T Consensus        88 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~P~~~lid~~G~i~~~~~g~~~~~l~~~l~~l~~~  149 (159)
T 2ls5_A           88 KSTGVTYPLGLDPGADIFAKYALRDAGITRNVLIDREGKIVKLTRLYNEEEFASLVQQINEM  149 (159)
Confidence                               334  5679998888 999999988887777787777776544

>3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti}

Probab=99.73  E-value=5.4e-18  Score=113.84  Aligned_cols=117  Identities=14%  Similarity=0.210  Sum_probs=92.8

Q ss_pred             ccCCCceEEeechhHHHHHHHHHhhCCC-EEEEEEeCCCChhhhhhhHhHHHHHHhCCC--cEEEEEeCC----------
Q 032502           20 EFAGGNVSLVTTKDIWDQKMSEASKEGK-IVIANFSATWCGPCRMIAPFFSELSEKYPS--LMFLLVDVD----------   86 (139)
Q Consensus        20 ~~~~~~~~~i~~~~~~~~~~~~~~~~~k-~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~--v~~~~vd~~----------   86 (139)
                      ...|..+|++...+...+.+.+....++ ++||+||++||+.|+.+.+.|.++++++++  +.++.|+.+          
T Consensus        32 l~~G~~aP~f~l~~~~G~~v~l~~~~gk~~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Vs~d~~~~~~~d~~  111 (218)
T 3u5r_E           32 ITLGTRAADFVLPDAGGNLFTLAEFKDSPALLVAFISNRCPFVVLIREALAKFAGDYAGQGLAVVAINSNDAQAFPEETL  111 (218)
T ss_dssp             CCTTCBCCCCCEECTTCCEECGGGGTTCSEEEEEECCSSCHHHHTTHHHHHHHHHHHTTTTEEEEEEECSCTTTCGGGSH
T ss_pred             CCCCCcCCCcEeECCCCCEEeHHHhCCCCeEEEEEECCCCccHHHHHHHHHHHHHHHHhCCcEEEEEECCcccccccCCH
Confidence            4456677777655554555666667788 599999999999999999999999999864  999999983          


Q ss_pred             -------------------cchhhhhhCCCcceeEEEEE-eCCeEEEEEe---------CC-ChHHHHHHHHHHhhccCC
Q 032502           87 -------------------ELVEFSTSWDIKATPTFFFL-KDGQQVDKLV---------GA-NKPELQKKVAAAVDSVVP  136 (139)
Q Consensus        87 -------------------~~~~~~~~~~v~~~Pt~~~~-~~g~~~~~~~---------g~-~~~~l~~~i~~~~~~~~~  136 (139)
                                         ....+++.|++..+|+++++ ++|+++.+..         +. +.++|.+.|+++++....
T Consensus       112 ~~~~~~~~~~~~~~~~l~D~~~~~~~~~~v~~~P~~~liD~~G~i~~~g~~d~~~~~~~~~~~~~~l~~~i~~ll~~~~~  191 (218)
T 3u5r_E          112 ERVGAEVKAYGYGFPYLKDASQSVAKAYGAACTPDFFLYDRERRLVYHGQFDDARPGNGKDVTGADLRAAVDAVLKGKDV  191 (218)
T ss_dssp             HHHHHHHHHHTCCSCEEECTTCHHHHHHTCCEESEEEEECTTCBEEEEECSSSCCTTSCCCCCCHHHHHHHHHHHTTCCC
T ss_pred             HHHHHHHHHhCCCccEEECCccHHHHHcCCCCCCeEEEECCCCcEEEeccccccccccccccCHHHHHHHHHHHHcCCCC
Confidence                               34567889999999999888 8999986632         12 578999999999876443

>3ira_A Conserved protein; methanosarcina mazei,structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 2.10A {Methanosarcina mazei}

Probab=99.73  E-value=3.3e-18  Score=110.91  Aligned_cols=97  Identities=18%  Similarity=0.209  Sum_probs=73.4

Q ss_pred             HHHHHHHhhCCCEEEEEEeCCCChhhhhhhHh-H--HHHHHhCC-CcEEEEEeCCcchhhhhhC--------CCcceeEE
Q 032502           36 DQKMSEASKEGKIVIANFSATWCGPCRMIAPF-F--SELSEKYP-SLMFLLVDVDELVEFSTSW--------DIKATPTF  103 (139)
Q Consensus        36 ~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~-l--~~~~~~~~-~v~~~~vd~~~~~~~~~~~--------~v~~~Pt~  103 (139)
                      +..+..+..++|+|+|.||++||++|+.|.+. +  .++++.+. ++.++.||.++.+++...|        |+.++|++
T Consensus        29 ~ea~~~A~~~~KpVlvdF~A~WC~~Ck~m~~~~f~~~~va~~l~~~fv~ikVD~de~~~l~~~y~~~~q~~~gv~g~Pt~  108 (173)
T 3ira_A           29 EEAFEKARKENKPVFLSIGYSTCHWCHMMAHESFEDEEVAGLMNEAFVSIKVDREERPDIDNIYMTVCQIILGRGGWPLN  108 (173)
T ss_dssp             HHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHTTTCHHHHHHHHHHCEEEEEETTTCHHHHHHHHHHHHHHHSCCCSSEE
T ss_pred             HHHHHHHHHhCCCEEEecccchhHhhccccccccCCHHHHHHHHhcCceeeeCCcccCcHHHHHHHHHHHHcCCCCCcce
Confidence            34455555789999999999999999999883 2  45555443 5889999999999998888        99999999


Q ss_pred             EEE-eCCeEEEEEeCC------ChHHHHHHHHHHhh
Q 032502          104 FFL-KDGQQVDKLVGA------NKPELQKKVAAAVD  132 (139)
Q Consensus       104 ~~~-~~g~~~~~~~g~------~~~~l~~~i~~~~~  132 (139)
                      +++ .+|+++......      +.+.+.+.|+++.+
T Consensus       109 v~l~~dG~~v~~~ty~p~~~~~~~~~f~~~L~~v~~  144 (173)
T 3ira_A          109 IIMTPGKKPFFAGTYIPKNTRFNQIGMLELVPRIKE  144 (173)
T ss_dssp             EEECTTSCEEEEESSCCSSCBTTBCCHHHHHHHHHH
T ss_pred             eeECCCCCceeeeeeCCCCcCCCCCCHHHHHHHHHH
Confidence            999 599998863221      23456666655543

>2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A

Probab=99.73  E-value=2.2e-17  Score=105.62  Aligned_cols=96  Identities=17%  Similarity=0.348  Sum_probs=79.5

Q ss_pred             HHHHhhCCCEEEEEEeCCCChh-hhhhhHhHHHHHHhC------CCcEEEEEeCCcc-----------------------
Q 032502           39 MSEASKEGKIVIANFSATWCGP-CRMIAPFFSELSEKY------PSLMFLLVDVDEL-----------------------   88 (139)
Q Consensus        39 ~~~~~~~~k~vlv~f~~~~C~~-C~~~~~~l~~~~~~~------~~v~~~~vd~~~~-----------------------   88 (139)
                      +.+...++|++||+||++||+. |....+.|.++++++      +++.++.|+.|..                       
T Consensus        16 ~~l~~~~gk~vll~f~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~~~vv~vs~d~~~d~~~~~~~~~~~~~~~~~~l~~   95 (164)
T 2ggt_A           16 KTDKDYLGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPERDTKEAIANYVKEFSPKLVGLTG   95 (164)
T ss_dssp             EEGGGGTTCEEEEEEECTTCSSHHHHHHHHHHHHHHHHHHSSSSCCEEEEEEESCTTTCCHHHHHHHHHTTCSSCEEEEC
T ss_pred             EeHHHcCCCEEEEEEEeCCCCchhHHHHHHHHHHHHHHhhccCCCcEEEEEEEeCCCCCCHHHHHHHHHHcCCCeEEEeC
Confidence            3444457899999999999997 999999999998877      3788888888642                       


Q ss_pred             -----hhhhhhCCCccee---------------EEEEE-eCCeEEEEEeCC-ChHHHHHHHHHHhhcc
Q 032502           89 -----VEFSTSWDIKATP---------------TFFFL-KDGQQVDKLVGA-NKPELQKKVAAAVDSV  134 (139)
Q Consensus        89 -----~~~~~~~~v~~~P---------------t~~~~-~~g~~~~~~~g~-~~~~l~~~i~~~~~~~  134 (139)
                           ..+.+.|++..+|               +++++ ++|+++.++.|. +.+++.+.|.++++..
T Consensus        96 ~~d~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~l~~ll~~~  163 (164)
T 2ggt_A           96 TREEVDQVARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGPDGEFLDYFGQNKRKGEIAASIATHMRPY  163 (164)
T ss_dssp             CHHHHHHHHHTTTCCEEEEEECTTSCEEEEECCEEEEECTTSCEEEEEETTCCHHHHHHHHHHHHGGG
T ss_pred             CHHHHHHHHHhcCeEEEecCCCCCCCeeEeccceEEEECCCCeEEEEeCCCCCHHHHHHHHHHHHHhc
Confidence                 1367889999999               55555 999999999888 8999999999998764

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A

Probab=99.72  E-value=3.4e-17  Score=121.81  Aligned_cols=104  Identities=21%  Similarity=0.337  Sum_probs=86.6

Q ss_pred             CceEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCC----CcEEEEEeCCcchhhhhhCCCcc
Q 032502           24 GNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP----SLMFLLVDVDELVEFSTSWDIKA   99 (139)
Q Consensus        24 ~~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~----~v~~~~vd~~~~~~~~~~~~v~~   99 (139)
                      +.+..+ +.++|+..+.   .+++++||+||++||++|+.+.|.+.++++.++    ++.++.+|++.+... . |+|.+
T Consensus       358 ~~v~~l-~~~~f~~~v~---~~~k~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~v~~~~vd~~~~~~~-~-~~v~~  431 (504)
T 2b5e_A          358 SSVFQL-VGKNHDEIVN---DPKKDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKLDHTENDVR-G-VVIEG  431 (504)
T ss_dssp             CSEEEE-CTTTHHHHHH---CTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHHHHCSSCEEEEEEGGGCCCS-S-CCCSS
T ss_pred             ccceec-ccccHHHhhc---cCCCCEEEEEECCCChhHHHHhHHHHHHHHHhhccCCcEEEEEecCCccccc-c-CCcee
Confidence            345544 5677776663   458999999999999999999999999998876    699999999887654 4 99999


Q ss_pred             eeEEEEEeCCeE--EEEEeCC-ChHHHHHHHHHHhhc
Q 032502          100 TPTFFFLKDGQQ--VDKLVGA-NKPELQKKVAAAVDS  133 (139)
Q Consensus       100 ~Pt~~~~~~g~~--~~~~~g~-~~~~l~~~i~~~~~~  133 (139)
                      +||+++|++|+.  ..++.|. +.+.|.++|.+.+..
T Consensus       432 ~Pt~~~~~~G~~~~~~~~~G~~~~~~l~~~i~~~~~~  468 (504)
T 2b5e_A          432 YPTIVLYPGGKKSESVVYQGSRSLDSLFDFIKENGHF  468 (504)
T ss_dssp             SSEEEEECCTTSCCCCBCCSCCCHHHHHHHHHHHCTT
T ss_pred             cCeEEEEeCCceecceEecCCCCHHHHHHHHHhcCCC
Confidence            999999999976  6677787 999999999988654

>2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens}

Probab=99.72  E-value=1.8e-17  Score=106.85  Aligned_cols=98  Identities=17%  Similarity=0.278  Sum_probs=81.4

Q ss_pred             HHHHhhCCCEEEEEEeCCCChh-hhhhhHhHHHHHHhC------CCcEEEEEeCCcc-----------------------
Q 032502           39 MSEASKEGKIVIANFSATWCGP-CRMIAPFFSELSEKY------PSLMFLLVDVDEL-----------------------   88 (139)
Q Consensus        39 ~~~~~~~~k~vlv~f~~~~C~~-C~~~~~~l~~~~~~~------~~v~~~~vd~~~~-----------------------   88 (139)
                      +.+...++|++||+||++||++ |+...+.|.++++++      .++.++.|++|..                       
T Consensus        19 ~~l~~~~gk~vll~F~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~vv~is~d~~~d~~~~~~~~~~~~~~~~~~l~~   98 (171)
T 2rli_A           19 RCKADFRGQWVLMYFGFTHCPDICPDELEKLVQVVRQLEAEPGLPPVQPVFITVDPERDDVEAMARYVQDFHPRLLGLTG   98 (171)
T ss_dssp             EETTTTTTSEEEEEEECTTCSSSHHHHHHHHHHHHHHHHHSTTSCCEEEEEEESCSTTCCHHHHHHHHHTTCTTCCEEEC
T ss_pred             EeHHHhCCCEEEEEEEcCCCCchhHHHHHHHHHHHHHHhhccCCCceEEEEEEECCCCCCHHHHHHHHHHcCCCeEEEeC
Confidence            3444457899999999999998 999999999999887      4799999988731                       


Q ss_pred             -----hhhhhhCCCccee---------------EEEEE-eCCeEEEEEeCC-ChHHHHHHHHHHhhccCC
Q 032502           89 -----VEFSTSWDIKATP---------------TFFFL-KDGQQVDKLVGA-NKPELQKKVAAAVDSVVP  136 (139)
Q Consensus        89 -----~~~~~~~~v~~~P---------------t~~~~-~~g~~~~~~~g~-~~~~l~~~i~~~~~~~~~  136 (139)
                           ..+++.|++..+|               +++++ ++|+++.++.|. +.+++.+.|+++++....
T Consensus        99 ~~~~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~l~~ll~~~~~  168 (171)
T 2rli_A           99 STKQVAQASHSYRVYYNAGPKDEDQDYIVDHSIAIYLLNPDGLFTDYYGRSRSAEQISDSVRRHMAAFRS  168 (171)
T ss_dssp             CHHHHHHHHHHSCCCCEECCCCSSCCCCEECCCEEEEECTTSCEEEEEESSCCHHHHHHHHHHHHHHHCC
T ss_pred             CHHHHHHHHHHhCeEEEecCCCCCCCeEEeccceEEEECCCCeEEEEECCCCCHHHHHHHHHHHHHHHHh
Confidence                 1467789999998               65555 999999999988 899999999999886543

>2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea}

Probab=99.72  E-value=3.4e-17  Score=98.09  Aligned_cols=76  Identities=9%  Similarity=0.200  Sum_probs=68.0

Q ss_pred             EEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhhhhhCCCcceeEEEEEeCCeEEEEEeCC-ChHHHHHH
Q 032502           48 IVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGA-NKPELQKK  126 (139)
Q Consensus        48 ~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~  126 (139)
                      ..|+.||++||++|+.+.+.|++++.+++ +.|..+|+++++++..+|++. +|+++++.+|+.+.  .|. +.++|.++
T Consensus        30 ~~vv~y~~~~C~~C~~a~~~L~~l~~e~~-i~~~~vDId~d~~l~~~ygv~-VP~l~~~~dG~~v~--~g~~~~~~L~~~  105 (107)
T 2fgx_A           30 RKLVVYGREGCHLCEEMIASLRVLQKKSW-FELEVINIDGNEHLTRLYNDR-VPVLFAVNEDKELC--HYFLDSDVIGAY  105 (107)
T ss_dssp             CCEEEEECSSCHHHHHHHHHHHHHHHHSC-CCCEEEETTTCHHHHHHSTTS-CSEEEETTTTEEEE--CSSCCCHHHHHH
T ss_pred             cEEEEEeCCCChhHHHHHHHHHHHHHhcC-CeEEEEECCCCHHHHHHhCCC-CceEEEEECCEEEE--ecCCCHHHHHHH
Confidence            56889999999999999999999999884 999999999999999999997 99999999999873  355 88888887


Q ss_pred             H
Q 032502          127 V  127 (139)
Q Consensus       127 i  127 (139)
                      |
T Consensus       106 L  106 (107)
T 2fgx_A          106 L  106 (107)
T ss_dssp             H
T ss_pred             h
Confidence            6

>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A

Probab=99.71  E-value=9.3e-18  Score=105.47  Aligned_cols=77  Identities=27%  Similarity=0.506  Sum_probs=65.6

Q ss_pred             HHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCC---CcEEEEEeCCcc------------------------hhh
Q 032502           39 MSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP---SLMFLLVDVDEL------------------------VEF   91 (139)
Q Consensus        39 ~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~---~v~~~~vd~~~~------------------------~~~   91 (139)
                      +.+...++|++||+||++||++|+.+.|.|.+++++++   ++.++.|+++..                        ..+
T Consensus        21 ~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  100 (144)
T 1i5g_A           21 IALPSLAGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDESAEDFKDYYAKMPWLALPFEDRKGMEFL  100 (144)
T ss_dssp             EEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHH
T ss_pred             ecHHHcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCCCEEEEEEeCCCCHHHHHHHHHhCCccccccCchHHHHHH
Confidence            44444578999999999999999999999999999986   588999988752                        468


Q ss_pred             hhhCCCcceeEEEEEe--CCeEEEEE
Q 032502           92 STSWDIKATPTFFFLK--DGQQVDKL  115 (139)
Q Consensus        92 ~~~~~v~~~Pt~~~~~--~g~~~~~~  115 (139)
                      ++.|++.++|+++++.  +|+++.+.
T Consensus       101 ~~~~~v~~~P~~~lid~~~G~i~~~~  126 (144)
T 1i5g_A          101 TTGFDVKSIPTLVGVEADSGNIITTQ  126 (144)
T ss_dssp             HHHTTCCSSSEEEEEETTTCCEEESC
T ss_pred             HHHcCCCCCCEEEEEECCCCcEEecc
Confidence            8899999999999885  89988764

>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=99.70  E-value=2.2e-17  Score=105.82  Aligned_cols=108  Identities=16%  Similarity=0.097  Sum_probs=81.1

Q ss_pred             CCceEEeechhHHHHHHHHHhhCCCE-EEEEEe-CCCChhhhhhhHhHHHHHHhCC--CcEEEEEeCC------------
Q 032502           23 GGNVSLVTTKDIWDQKMSEASKEGKI-VIANFS-ATWCGPCRMIAPFFSELSEKYP--SLMFLLVDVD------------   86 (139)
Q Consensus        23 ~~~~~~i~~~~~~~~~~~~~~~~~k~-vlv~f~-~~~C~~C~~~~~~l~~~~~~~~--~v~~~~vd~~------------   86 (139)
                      |..+|++...+...+.+.+....+++ +||+|| ++||+.|+...+.|.+++++++  ++.++.|+.|            
T Consensus         5 G~~~P~f~l~~~~G~~~~l~~~~gk~~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~vs~d~~~~~~~~~~~~   84 (161)
T 3drn_A            5 GDKAPLFEGIADNGEKISLSDYIGKHNIVLYFYPKDDTPGSTREASAFRDNWDLLKDYDVVVIGVSSDDINSHKRFKEKY   84 (161)
T ss_dssp             TSBCCCCEEEETTSCEEEGGGTTTTSEEEEEECSCTTCHHHHHHHHHHHHTHHHHHTTCEEEEEEESCCHHHHHHHHHHT
T ss_pred             CCcCCCeEeecCCCCEEEHHHhcCCCCEEEEEEcCCCCCchHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHHHh
Confidence            44455554444334445555567886 999999 9999999999999999999985  4899999887            


Q ss_pred             ---------cchhhhhhCCCcc----eeEEEEE-eCCeEEEEEeC-C-Ch---HHHHHHHHHH
Q 032502           87 ---------ELVEFSTSWDIKA----TPTFFFL-KDGQQVDKLVG-A-NK---PELQKKVAAA  130 (139)
Q Consensus        87 ---------~~~~~~~~~~v~~----~Pt~~~~-~~g~~~~~~~g-~-~~---~~l~~~i~~~  130 (139)
                               ....+.+.|++.+    +|+++++ ++|+++..+.| . ..   +++.+.|+++
T Consensus        85 ~~~~~~~~d~~~~~~~~~~v~~~~~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~il~~l~~l  147 (161)
T 3drn_A           85 KLPFILVSDPDKKIRELYGAKGFILPARITFVIDKKGIIRHIYNSQMNPANHVNEALKALKQI  147 (161)
T ss_dssp             TCCSEEEECTTSHHHHHTTCCCSSSCCCEEEEECTTSBEEEEEECSSCTTHHHHHHHHHHHHH
T ss_pred             CCCceEEECCcHHHHHHcCCCCcCcccceEEEECCCCEEEEEEecCCCCCcCHHHHHHHHHHh
Confidence                     3456788999999    9987777 89999999998 3 33   3444444444

>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold, sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A {Trypanosoma brucei} PDB: 3qd9_A*

Probab=99.70  E-value=2.5e-17  Score=120.95  Aligned_cols=108  Identities=21%  Similarity=0.286  Sum_probs=82.7

Q ss_pred             CceEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCC---------CcEEEEEeCCcchhhhhh
Q 032502           24 GNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP---------SLMFLLVDVDELVEFSTS   94 (139)
Q Consensus        24 ~~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~---------~v~~~~vd~~~~~~~~~~   94 (139)
                      ..+..+ +.++|+..+..  .+++++||+||++||++|+.+.|.+.++++.++         .+.|+.||++++++++++
T Consensus        23 ~~V~~L-t~~~F~~~l~~--~~~k~VlV~FyA~WC~pCk~~~P~l~~la~~~~~~~g~~~~~~v~f~~VD~d~~~~la~~   99 (470)
T 3qcp_A           23 SSVVDL-SGDDFSRVHRV--APLCPWIVLFYNDGCGACRRYASTFSKFAGGLKVEHGKDALQIATAAAVNCASEVDLCRK   99 (470)
T ss_dssp             TTEEEC-SCSCGGGTCTT--GGGSCEEEEEECTTCHHHHHHHHHHHHHHHTSCCSSCSSGGGGCEEEEEETTTCHHHHHH
T ss_pred             CCcEEC-CHHHHHHHHHh--CCCCeEEEEEECCCCHHHHHHHHHHHHHHHHHhhhcccccCceEEEEEEECCCCHHHHHH
Confidence            445555 55667655531  245899999999999999999999999999996         399999999999999999


Q ss_pred             CCCcceeEEEEEeCCe--EEEEEeC-------------CChHHHHHHHHHHhhcc
Q 032502           95 WDIKATPTFFFLKDGQ--QVDKLVG-------------ANKPELQKKVAAAVDSV  134 (139)
Q Consensus        95 ~~v~~~Pt~~~~~~g~--~~~~~~g-------------~~~~~l~~~i~~~~~~~  134 (139)
                      |+|.++||+++|++|+  ....+.|             .+.++|...++.++++.
T Consensus       100 y~V~~~PTlilf~~gg~~~~~~y~G~r~~e~L~fI~k~l~~~eLe~~~e~Link~  154 (470)
T 3qcp_A          100 YDINFVPRLFFFYPRDSCRSNEECGTSSLEHVAFENSHLEVDELESEVRRLVNKH  154 (470)
T ss_dssp             TTCCSSCEEEEEEESSCCCTTSCCCCCCEEEEECSCTTCCHHHHHHHHHHHHHHH
T ss_pred             cCCCccCeEEEEECCCceEEEEeeCCCCHHHHHHHHHhcCHHHHHHHHHHHhhhc
Confidence            9999999999995433  1222222             25667777777776543

>2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione, dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei}

Probab=99.70  E-value=1.8e-17  Score=108.98  Aligned_cols=112  Identities=20%  Similarity=0.237  Sum_probs=84.3

Q ss_pred             CceEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCC--CcEEEEEeCCc--------ch---h
Q 032502           24 GNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP--SLMFLLVDVDE--------LV---E   90 (139)
Q Consensus        24 ~~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~--------~~---~   90 (139)
                      ..+|++...+...+.+.+...++|++||+||++||+.|+...+.|.++++++.  ++.++.|++|.        ..   .
T Consensus        26 ~~~p~f~l~~~~G~~~~l~~~~Gk~vll~F~atwC~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~  105 (190)
T 2vup_A           26 SSIFDFEVLDADHKPYNLVQHKGSPLLIYNVASKCGYTKGGYETATTLYNKYKSQGFTVLAFPCNQFGGQEPGNEEEIKE  105 (190)
T ss_dssp             CSGGGSCCBBTTSSBCCGGGGTTSCEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTCEEEEEECCCSTTCCCSCHHHHHH
T ss_pred             CcccCeEEEcCCCCEEEHHHcCCCEEEEEEecCCCCccHHHHHHHHHHHHHHhcCCeEEEEEEcCccCCCCCCCHHHHHH
Confidence            34444444333344455566789999999999999999999999999999986  49999998862        11   1


Q ss_pred             hh-h-----------------------------hCCCccee------EEEEE-eCCeEEEEEeCC-ChHHHHHHHHHHhh
Q 032502           91 FS-T-----------------------------SWDIKATP------TFFFL-KDGQQVDKLVGA-NKPELQKKVAAAVD  132 (139)
Q Consensus        91 ~~-~-----------------------------~~~v~~~P------t~~~~-~~g~~~~~~~g~-~~~~l~~~i~~~~~  132 (139)
                      +. +                             .|++.++|      +++++ ++|+++.++.|. +.+++.+.|.++++
T Consensus       106 ~~~~~~~~~~p~l~~~D~~~~~~~~~~~~l~~~~~~v~~~P~i~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll~  185 (190)
T 2vup_A          106 FVCTKFKAEFPIMAKINVNGENAHPLYEYMKKTKPGILKTKAIKWNFTSFLIDRDGVPVERFSPGASVKDIEKKLIPLLE  185 (190)
T ss_dssp             HHHHHHCCCSCBBCCCBSSSTTBCHHHHHHHHHSCCGGGCCSCCSTTCEEEECTTSCEEEEECTTCCHHHHHHHHHHHHH
T ss_pred             HHHHhcCCCeEEEeecccCcccccHHHHHHHhhcCCcCCCccccccceEEEECCCCcEEEEECCCCCHHHHHHHHHHHHh
Confidence            12 1                             24788899      55555 999999999988 89999999999987


Q ss_pred             ccC
Q 032502          133 SVV  135 (139)
Q Consensus       133 ~~~  135 (139)
                      ...
T Consensus       186 ~~~  188 (190)
T 2vup_A          186 STQ  188 (190)
T ss_dssp             CC-
T ss_pred             hcc
Confidence            654

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=99.70  E-value=3.7e-17  Score=127.07  Aligned_cols=106  Identities=16%  Similarity=0.238  Sum_probs=89.2

Q ss_pred             eEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCC-CcEEEEEeCCcchhhhhhCCCcceeEEE
Q 032502           26 VSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP-SLMFLLVDVDELVEFSTSWDIKATPTFF  104 (139)
Q Consensus        26 ~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~-~v~~~~vd~~~~~~~~~~~~v~~~Pt~~  104 (139)
                      +..+ +.+++...+.   ..+++++|.||++||++|+.+.|.++++++++. ++.|+.+|+++++.++++|+|.++||++
T Consensus       659 v~~l-~~~~~~~~~~---~~~~~v~v~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~  734 (780)
T 3apo_A          659 SIDL-TPQTFNEKVL---QGKTHWVVDFYAPWSGPSQNFAPEFELLARMIKGKVRAGKVDCQAYPQTCQKAGIKAYPSVK  734 (780)
T ss_dssp             SEEE-CHHHHHHHTT---TCSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTCEEEEEETTTCHHHHHHTTCCSSSEEE
T ss_pred             cccC-CHHHHHHHHh---cCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCceEEEEECCCCHHHHHhcCCCcCCEEE
Confidence            4444 4566655443   457899999999999999999999999999986 5999999999999999999999999999


Q ss_pred             EEeCCeEEEEEeC----C-ChHHHHHHHHHHhhccC
Q 032502          105 FLKDGQQVDKLVG----A-NKPELQKKVAAAVDSVV  135 (139)
Q Consensus       105 ~~~~g~~~~~~~g----~-~~~~l~~~i~~~~~~~~  135 (139)
                      ++++|+.+.++.|    . +.++|.++|.+++.+..
T Consensus       735 ~~~~g~~~~~~~G~~~g~~~~~~l~~~l~~~l~~~~  770 (780)
T 3apo_A          735 LYQYERAKKSIWEEQINSRDAKTIAALIYGKLETLQ  770 (780)
T ss_dssp             EEEEETTTTEEEEEEECCCCHHHHHHHHHHHTTC--
T ss_pred             EEcCCCccccccCcccCCcCHHHHHHHHHHHHHHhh
Confidence            9999988766666    3 89999999999987653

>2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein disulfide isomerase, PIPE, dorsal-ventral patterning, chaperone, WIND mutants; 1.75A {Drosophila melanogaster} SCOP: a.71.1.1 c.47.1.7 PDB: 1ovn_A 2c0f_A 2c1y_A 2c0e_A

Probab=99.70  E-value=1.8e-16  Score=108.14  Aligned_cols=97  Identities=14%  Similarity=0.225  Sum_probs=82.1

Q ss_pred             eEEeechhHHHHHHHHHhhCCCEEEEEEe--CCCChhhhhhhHhHHHHHHhC----CCcEEEEEeCCc-----chhhhhh
Q 032502           26 VSLVTTKDIWDQKMSEASKEGKIVIANFS--ATWCGPCRMIAPFFSELSEKY----PSLMFLLVDVDE-----LVEFSTS   94 (139)
Q Consensus        26 ~~~i~~~~~~~~~~~~~~~~~k~vlv~f~--~~~C~~C~~~~~~l~~~~~~~----~~v~~~~vd~~~-----~~~~~~~   94 (139)
                      +.. .+.++|+..+    .+++++||.||  ++||+    +.|.++++++.+    +++.|+.||+++     +++++.+
T Consensus        18 v~~-Lt~~nF~~vi----~~~~~vlV~Fy~~ApWCg----l~P~~e~lA~~~~~~~~~v~~akVD~d~~g~~~n~~la~~   88 (248)
T 2c0g_A           18 CVD-LDELSFEKTV----ERFPYSVVKFDIASPYGE----KHEAFTAFSKSAHKATKDLLIATVGVKDYGELENKALGDR   88 (248)
T ss_dssp             CEE-CCTTTHHHHH----TTSSEEEEEEEESSCCSH----HHHHHHHHHHHHHHHCSSEEEEEEEECSSTTCTTHHHHHH
T ss_pred             cEE-CCHHHHHHHH----hcCCCEEEEEECCCCCCc----cHHHHHHHHHHHhccCCCeEEEEEECCcccccccHHHHHH
Confidence            444 3667787755    45789999999  99999    999999999887    369999999998     8999999


Q ss_pred             CCCc--ceeEEEEEeCCeE--EEEE--eCC-ChHHHHHHHHHHhh
Q 032502           95 WDIK--ATPTFFFLKDGQQ--VDKL--VGA-NKPELQKKVAAAVD  132 (139)
Q Consensus        95 ~~v~--~~Pt~~~~~~g~~--~~~~--~g~-~~~~l~~~i~~~~~  132 (139)
                      |+|.  ++||+++|+ |+.  ...+  .|. +.+.|.++|.+.++
T Consensus        89 ~~V~~~~~PTl~~F~-G~~~~~~~y~~~G~~~~~~L~~fi~~~~~  132 (248)
T 2c0g_A           89 YKVDDKNFPSIFLFK-GNADEYVQLPSHVDVTLDNLKAFVSANTP  132 (248)
T ss_dssp             TTCCTTSCCEEEEES-SSSSSEEECCTTSCCCHHHHHHHHHHHSS
T ss_pred             hCCCcCCCCeEEEEe-CCcCcceeecccCCCCHHHHHHHHHHhhc
Confidence            9999  999999999 873  4556  676 99999999998865

>1ttz_A Conserved hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative; 2.11A {Xanthomonas campestris} SCOP: c.47.1.1 PDB: 1xpv_A

Probab=99.70  E-value=3.1e-17  Score=95.03  Aligned_cols=76  Identities=16%  Similarity=0.315  Sum_probs=64.4

Q ss_pred             EEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhhhhhCCCcceeEEEEEeCCeEEEEEeCC-ChHHHHHHHH
Q 032502           50 IANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGA-NKPELQKKVA  128 (139)
Q Consensus        50 lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~i~  128 (139)
                      |+.||++||++|+.+.+.|+++...+    +..+|++++++++.+|+++ +|++++ .+|+.+.   |. +.++|.++|.
T Consensus         3 vv~f~a~~C~~C~~~~~~L~~~~~~~----~~~vdid~~~~l~~~~g~~-vPtl~~-~~G~~v~---g~~~~~~L~~~l~   73 (87)
T 1ttz_A            3 LTLYQRDDCHLCDQAVEALAQARAGA----FFSVFIDDDAALESAYGLR-VPVLRD-PMGRELD---WPFDAPRLRAWLD   73 (87)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHTTCCC----EEEEECTTCHHHHHHHTTT-CSEEEC-TTCCEEE---SCCCHHHHHHHHH
T ss_pred             EEEEECCCCchHHHHHHHHHHHHHhh----eEEEECCCCHHHHHHhCCC-cCeEEE-ECCEEEe---CCCCHHHHHHHHH
Confidence            67899999999999999998885443    6889999999999999998 999998 8999875   65 8999999998


Q ss_pred             HHhhcc
Q 032502          129 AAVDSV  134 (139)
Q Consensus       129 ~~~~~~  134 (139)
                      +.+...
T Consensus        74 ~~~~~~   79 (87)
T 1ttz_A           74 AAPHAL   79 (87)
T ss_dssp             TCC---
T ss_pred             HHHHHH
Confidence            776654

>1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A

Probab=99.70  E-value=1.8e-17  Score=104.46  Aligned_cols=77  Identities=27%  Similarity=0.520  Sum_probs=65.7

Q ss_pred             HHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCC---CcEEEEEeCCcc------------------------hhh
Q 032502           39 MSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP---SLMFLLVDVDEL------------------------VEF   91 (139)
Q Consensus        39 ~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~---~v~~~~vd~~~~------------------------~~~   91 (139)
                      +.+...++|++||+||++||++|+.+.|.|.+++++++   ++.++.|+++..                        ..+
T Consensus        21 ~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  100 (146)
T 1o8x_A           21 VEVKSLAGKLVFFYFSASWCPPARGFTPQLIEFYDKFHESKNFEVVFCTWDEEEDGFAGYFAKMPWLAVPFAQSEAVQKL  100 (146)
T ss_dssp             EEGGGGTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCGGGHHHHHHH
T ss_pred             CcHHHhCCCEEEEEEEccCCHHHHHHHHHHHHHHHHhhhcCCeEEEEEeCCCCHHHHHHHHHHCCceeeccchhhHHHHH
Confidence            44444578999999999999999999999999999986   588999988753                        467


Q ss_pred             hhhCCCcceeEEEEEe--CCeEEEEE
Q 032502           92 STSWDIKATPTFFFLK--DGQQVDKL  115 (139)
Q Consensus        92 ~~~~~v~~~Pt~~~~~--~g~~~~~~  115 (139)
                      +++|+|.++|+++++.  +|+++.+.
T Consensus       101 ~~~~~v~~~Pt~~lid~~~G~i~~~~  126 (146)
T 1o8x_A          101 SKHFNVESIPTLIGVDADSGDVVTTR  126 (146)
T ss_dssp             HHHTTCCSSSEEEEEETTTCCEEESC
T ss_pred             HHHhCCCCCCEEEEEECCCCeEEEec
Confidence            8899999999999986  89988764

>1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1

Probab=99.70  E-value=8.5e-17  Score=90.77  Aligned_cols=71  Identities=20%  Similarity=0.254  Sum_probs=62.0

Q ss_pred             EEEEeCCCChhhhhhhHhHHHHHHhCC-CcEEEEEeCCcchhhhhhCCCcceeEEEEEeCCeEEEEEeCC--ChHHHHHH
Q 032502           50 IANFSATWCGPCRMIAPFFSELSEKYP-SLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGA--NKPELQKK  126 (139)
Q Consensus        50 lv~f~~~~C~~C~~~~~~l~~~~~~~~-~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~--~~~~l~~~  126 (139)
                      .|.||++||++|+.+.|.+++++++++ ++.++.+|   +.+++++|+|.++||+++  +|+++.+  |.  +.++|.++
T Consensus         3 ~v~f~a~wC~~C~~~~~~l~~~~~~~~~~~~~~~v~---~~~~~~~~~v~~~Pt~~~--~G~~~~~--G~~~~~~~l~~~   75 (77)
T 1ilo_A            3 KIQIYGTGCANCQMLEKNAREAVKELGIDAEFEKIK---EMDQILEAGLTALPGLAV--DGELKIM--GRVASKEEIKKI   75 (77)
T ss_dssp             EEEEECSSSSTTHHHHHHHHHHHHHTTCCEEEEEEC---SHHHHHHHTCSSSSCEEE--TTEEEEC--SSCCCHHHHHHH
T ss_pred             EEEEEcCCChhHHHHHHHHHHHHHHcCCceEEEEec---CHHHHHHCCCCcCCEEEE--CCEEEEc--CCCCCHHHHHHH
Confidence            588999999999999999999999987 58888888   778899999999999998  9998776  65  67777765


Q ss_pred             H
Q 032502          127 V  127 (139)
Q Consensus       127 i  127 (139)
                      |
T Consensus        76 l   76 (77)
T 1ilo_A           76 L   76 (77)
T ss_dssp             C
T ss_pred             h
Confidence            4

>1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10

Probab=99.70  E-value=1.8e-17  Score=104.02  Aligned_cols=77  Identities=31%  Similarity=0.592  Sum_probs=65.6

Q ss_pred             HHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCC---CcEEEEEeCCcc------------------------hhh
Q 032502           39 MSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP---SLMFLLVDVDEL------------------------VEF   91 (139)
Q Consensus        39 ~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~---~v~~~~vd~~~~------------------------~~~   91 (139)
                      +.+...++|++||+||++||++|+.+.|.|.+++++++   ++.++.|+++..                        ..+
T Consensus        21 ~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (144)
T 1o73_A           21 VSLGSLVGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVAKNFEVVLISWDENESDFHDYYGKMPWLALPFDQRSTVSEL  100 (144)
T ss_dssp             BCSGGGTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHH
T ss_pred             CcHHHhCCCEEEEEEECcCCHHHHHHHHHHHHHHHHhccCCCEEEEEEeCCCCHHHHHHHHHhCCceEeeccchhHHHHH
Confidence            44445678999999999999999999999999999886   588888888753                        467


Q ss_pred             hhhCCCcceeEEEEEe--CCeEEEEE
Q 032502           92 STSWDIKATPTFFFLK--DGQQVDKL  115 (139)
Q Consensus        92 ~~~~~v~~~Pt~~~~~--~g~~~~~~  115 (139)
                      ++.|++.++|+++++.  +|+++.+.
T Consensus       101 ~~~~~v~~~Pt~~lid~~~G~i~~~~  126 (144)
T 1o73_A          101 GKTFGVESIPTLITINADTGAIIGTQ  126 (144)
T ss_dssp             HHHHTCCSSSEEEEEETTTCCEEESC
T ss_pred             HHHcCCCCCCEEEEEECCCCeEEecc
Confidence            8899999999999997  89888764

>2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain (residues 33-153), D domain (residues 154-261), CHA; 2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A

Probab=99.69  E-value=2.1e-16  Score=107.40  Aligned_cols=97  Identities=18%  Similarity=0.319  Sum_probs=81.6

Q ss_pred             eEEeechhHHHHHHHHHhhCCCEEEEEEeC--CCChhhhhhhHhHHHHHHhCC---CcEEEEEeCC-----cchhhhhhC
Q 032502           26 VSLVTTKDIWDQKMSEASKEGKIVIANFSA--TWCGPCRMIAPFFSELSEKYP---SLMFLLVDVD-----ELVEFSTSW   95 (139)
Q Consensus        26 ~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~--~~C~~C~~~~~~l~~~~~~~~---~v~~~~vd~~-----~~~~~~~~~   95 (139)
                      +..+ +.++|+..+    .+++++||.||+  |||+    +.|.++++++.+.   ++.|+.||++     .+++++.+|
T Consensus         7 v~~L-t~~nF~~~i----~~~~~vlV~FyA~~pWCg----l~P~~e~lA~~~~~~~~v~~akVDvd~~g~~~~~~l~~~~   77 (240)
T 2qc7_A            7 ALPL-DTVTFYKVI----PKSKFVLVKFDTQYPYGE----KQDEFKRLAENSASSDDLLVAEVGISDYGDKLNMELSEKY   77 (240)
T ss_dssp             CEEC-CTTHHHHHG----GGCSEEEEEECCSSCCSH----HHHHHHHHHHHHTTCTTEEEEEECCCCSSSCCSHHHHHHT
T ss_pred             ceEC-CHHHHHHHH----cCCCCEEEEEeCCCCCCc----chHHHHHHHHHhcCCCCeEEEEEeCCcccchhhHHHHHHc
Confidence            4443 567787765    357899999999  9999    9999999999874   5999999954     489999999


Q ss_pred             CCc--ceeEEEEEeCCe--EEEEEeCC-ChHHHHHHHHHHh
Q 032502           96 DIK--ATPTFFFLKDGQ--QVDKLVGA-NKPELQKKVAAAV  131 (139)
Q Consensus        96 ~v~--~~Pt~~~~~~g~--~~~~~~g~-~~~~l~~~i~~~~  131 (139)
                      +|.  ++||+++|++|+  ....+.|. +.+.|.++|.+..
T Consensus        78 ~V~~~~~PTl~~f~~G~~~~~~~y~G~~~~~~L~~fi~~~~  118 (240)
T 2qc7_A           78 KLDKESYPVFYLFRDGDFENPVPYTGAVKVGAIQRWLKGQG  118 (240)
T ss_dssp             TCCGGGCSEEEEEETTCSSCCEECCSCSCHHHHHHHHHHTT
T ss_pred             CCCCCCCCEEEEEeCCCcCcceeecCCCCHHHHHHHHHHhc
Confidence            999  999999999998  45677787 9999999998874

>2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: c.47.1.24

Probab=99.69  E-value=3.5e-16  Score=99.58  Aligned_cols=105  Identities=11%  Similarity=0.126  Sum_probs=83.3

Q ss_pred             chhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhH---HHHHHhC-CCcEEEEEeCCc--chhhhhhCCCcceeEEE
Q 032502           31 TKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFF---SELSEKY-PSLMFLLVDVDE--LVEFSTSWDIKATPTFF  104 (139)
Q Consensus        31 ~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l---~~~~~~~-~~v~~~~vd~~~--~~~~~~~~~v~~~Pt~~  104 (139)
                      ...+++..+..+..++|+++|+|+++||.+|+.|....   .++.+.. .++.++.+|.+.  ...+.++|++.++|+++
T Consensus        27 ~~~~~~~Al~~Ak~~~K~vlvd~~a~wC~~C~~me~~vf~d~~V~~~l~~~fv~v~~d~~~~~~~~l~~~y~v~~~P~~~  106 (153)
T 2dlx_A           27 HKGSFETAKECGQMQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIREHFIFWQVYHDSEEGQRYIQFYKLGDFPYVS  106 (153)
T ss_dssp             CCSCHHHHHHHHHHHTCEEEEEEECSCTTTHHHHHHHTTTCHHHHHHHHHTEEEEEEESSSHHHHHHHHHHTCCSSSEEE
T ss_pred             cccCHHHHHHHHHHcCCeEEEEEECCCCHhHHHHHHHhcCCHHHHHHHHcCeEEEEEecCCHhHHHHHHHcCCCCCCEEE
Confidence            45678888888878899999999999999999996443   3333333 268888898875  34678999999999999


Q ss_pred             EE-eC-CeEEEEEeCCChHHHHHHHHHHhhccC
Q 032502          105 FL-KD-GQQVDKLVGANKPELQKKVAAAVDSVV  135 (139)
Q Consensus       105 ~~-~~-g~~~~~~~g~~~~~l~~~i~~~~~~~~  135 (139)
                      ++ .+ |+.+..+.|.+.++|.+.|++++....
T Consensus       107 fld~~~G~~l~~~~g~~~~~fl~~L~~~l~~~~  139 (153)
T 2dlx_A          107 ILDPRTGQKLVEWHQLDVSSFLDQVTGFLGEHG  139 (153)
T ss_dssp             EECTTTCCCCEEESSCCHHHHHHHHHHHHHHTC
T ss_pred             EEeCCCCcEeeecCCCCHHHHHHHHHHHHHhcC
Confidence            99 55 777777766699999999999887643

>3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major}

Probab=99.69  E-value=7.1e-17  Score=104.00  Aligned_cols=78  Identities=32%  Similarity=0.550  Sum_probs=67.3

Q ss_pred             HHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCC---CcEEEEEeCCcc------------------------hh
Q 032502           38 KMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP---SLMFLLVDVDEL------------------------VE   90 (139)
Q Consensus        38 ~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~---~v~~~~vd~~~~------------------------~~   90 (139)
                      .+.++..++|++||+||++||++|+.+.|.|.+++++++   ++.++.|+++..                        ..
T Consensus        40 ~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (165)
T 3s9f_A           40 TADMDSLSGKTVFFYFSASWCPPCRGFTPQLVEFYEKHHDSKNFEIILASWDEEEDDFNAYYAKMPWLSIPFANRNIVEA  119 (165)
T ss_dssp             EECSGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCTTCHHHHHH
T ss_pred             cccHHHcCCCEEEEEEECCcChhHHHHHHHHHHHHHHhccCCCeEEEEEecCCCHHHHHHHHHhCCCcccccCchhHHHH
Confidence            455566789999999999999999999999999999986   488898888765                        57


Q ss_pred             hhhhCCCcceeEEEEE-eC-CeEEEEE
Q 032502           91 FSTSWDIKATPTFFFL-KD-GQQVDKL  115 (139)
Q Consensus        91 ~~~~~~v~~~Pt~~~~-~~-g~~~~~~  115 (139)
                      +++.|+|.++|+++++ ++ |+++.+.
T Consensus       120 l~~~~~v~~~Pt~~lid~~~G~iv~~~  146 (165)
T 3s9f_A          120 LTKKYSVESIPTLIGLNADTGDTVTTR  146 (165)
T ss_dssp             HHHHTTCCSSSEEEEEETTTCCEEESC
T ss_pred             HHHHcCCCCCCEEEEEeCCCCEEEecc
Confidence            8899999999999999 55 9988763

>2k6v_A Putative cytochrome C oxidase assembly protein; thioredoxin fold, electron transfer protein, metal binding protein, electron transport; NMR {Thermus thermophilus}

Probab=99.69  E-value=3.2e-17  Score=105.68  Aligned_cols=109  Identities=18%  Similarity=0.221  Sum_probs=81.7

Q ss_pred             CCCceEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChh-hhhhhHhHHHHHHhCC-----CcEEEEEeCCcc-------
Q 032502           22 AGGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGP-CRMIAPFFSELSEKYP-----SLMFLLVDVDEL-------   88 (139)
Q Consensus        22 ~~~~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~-C~~~~~~l~~~~~~~~-----~v~~~~vd~~~~-------   88 (139)
                      .|..+|++...+... .+.+...++|++||+||++||+. |+.+.+.|.+++++++     ++.++.|++|..       
T Consensus        12 ~G~~~p~f~l~~~~g-~~~l~~~~gk~vll~f~~~~C~~~C~~~~~~l~~~~~~~~~~~~~~v~vv~is~d~~~d~~~~~   90 (172)
T 2k6v_A           12 LNPKPVDFALEGPQG-PVRLSQFQDKVVLLFFGFTRCPDVCPTTLLALKRAYEKLPPKAQERVQVIFVSVDPERDPPEVA   90 (172)
T ss_dssp             EEEEECCCEEECSSS-EEEGGGSTTSEEEEEEECTTCSSHHHHHHHHHHHHHTTSCHHHHTTEEEEEEESCTTTCCHHHH
T ss_pred             cCCCCCCeEEEcCCC-CCcHHHhCCCEEEEEEECCCCcchhHHHHHHHHHHHHHhhhhccCCEEEEEEEECCCCCCHHHH
Confidence            344445544433333 45556667999999999999996 9999999999999997     699999998742       


Q ss_pred             ---------------------hhhhhhCC---------------CcceeEEEEEeCCeEEEEEeCC---ChHHHHHHHHH
Q 032502           89 ---------------------VEFSTSWD---------------IKATPTFFFLKDGQQVDKLVGA---NKPELQKKVAA  129 (139)
Q Consensus        89 ---------------------~~~~~~~~---------------v~~~Pt~~~~~~g~~~~~~~g~---~~~~l~~~i~~  129 (139)
                                           ..+++.|+               +..+|+++++.+|+++.++.|.   +.++|.+.|++
T Consensus        91 ~~~~~~~~~~~~~l~d~~~~~~~~~~~~gv~~~~~~~~~~~~~~i~~~P~~~lid~G~i~~~~~g~~~~~~~~l~~~l~~  170 (172)
T 2k6v_A           91 DRYAKAFHPSFLGLSGSPEAVREAAQTFGVFYQKSQYRGPGEYLVDHTATTFVVKEGRLVLLYSPDKAEATDRVVADLQA  170 (172)
T ss_dssp             HHHHHHHCTTEEEECCCHHHHHHHHHHHTCCEEEEEEEETTEEEEEECCCEEEEETTEEEEEECHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHhCCCcEEEeCCHHHHHHHHHhcCeEEEeccCCCCCCceEecCCEEEEEECCEEEEEECCCCCCCHHHHHHHHHH
Confidence                                 23444555               4678987777799999988776   67788888876


Q ss_pred             Hh
Q 032502          130 AV  131 (139)
Q Consensus       130 ~~  131 (139)
                      ++
T Consensus       171 ll  172 (172)
T 2k6v_A          171 LL  172 (172)
T ss_dssp             CC
T ss_pred             hC
Confidence            53

>3cmi_A Peroxiredoxin HYR1; thioredoxin-like fold, oxidoreductase, peroxidase, redox-ACT center; 2.02A {Saccharomyces cerevisiae}

Probab=99.69  E-value=2.1e-17  Score=106.90  Aligned_cols=96  Identities=15%  Similarity=0.259  Sum_probs=75.1

Q ss_pred             HHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCC--CcEEEEEeCCc-----------chhhh-----------
Q 032502           37 QKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP--SLMFLLVDVDE-----------LVEFS-----------   92 (139)
Q Consensus        37 ~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~-----------~~~~~-----------   92 (139)
                      +.+.+...++|++||+||++||+.|+ ..|.|.++++++.  ++.++.|+++.           ...+.           
T Consensus        23 ~~~~l~~~~Gk~vll~F~a~wC~~C~-~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~d~~~~~~~~~~~~~~~~~p~~  101 (171)
T 3cmi_A           23 QPFPFDQLKGKVVLIVNVASKCGFTP-QYKELEALYKRYKDEGFTIIGFPCNQFGHQEPGSDEEIAQFCQLNYGVTFPIM  101 (171)
T ss_dssp             CBCCGGGGTTCEEEEEEEESSSCCHH-HHHHHHHHHHHHGGGTEEEEEEEECSCC------------------CCCSCBB
T ss_pred             CEecHHHcCCCEEEEEEEecCCCcch-hHHHHHHHHHHhccCCeEEEEEECcccCCCCCCCHHHHHHHHHhccCCCceEE
Confidence            33455556799999999999999999 9999999999886  48888887631           01111           


Q ss_pred             -------------------hhCCCccee------EEEEE-eCCeEEEEEeCC-ChHHHHHHHHHHhhc
Q 032502           93 -------------------TSWDIKATP------TFFFL-KDGQQVDKLVGA-NKPELQKKVAAAVDS  133 (139)
Q Consensus        93 -------------------~~~~v~~~P------t~~~~-~~g~~~~~~~g~-~~~~l~~~i~~~~~~  133 (139)
                                         +.|++.++|      +++++ ++|+++.++.|. +.++|.+.|+++++.
T Consensus       102 ~d~d~~~~~~~~~~~~~~~~~~~v~~~P~i~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll~~  169 (171)
T 3cmi_A          102 KKIDVNGGNEDPVYKFLKSQKSGMLGLRGIKWNFEKFLVDKKGKVYERYSSLTKPSSLSETIEELLKE  169 (171)
T ss_dssp             CCCBSSSTTBCHHHHHHHHHSCCSSSCCSCCSTTCEEEECSSSCEEEEECTTSCGGGGHHHHHHHHTC
T ss_pred             eeccCCCccchHHHHHHHhccCCcCCCCcccccceEEEECCCCCEEEEeCCCCCHHHHHHHHHHHHHh
Confidence                               247888999      55555 999999999987 889999999998864

>2p31_A CL683, glutathione peroxidase 7; thioredoxin fold, NPGPX, phospholipid hydroperoxidase, struc genomics, structural genomics consortium, SGC; 2.00A {Homo sapiens}

Probab=99.68  E-value=8.6e-18  Score=109.76  Aligned_cols=112  Identities=13%  Similarity=0.143  Sum_probs=80.8

Q ss_pred             ccCCCceEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCC--CcEEEEEeCCc-------c-h
Q 032502           20 EFAGGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP--SLMFLLVDVDE-------L-V   89 (139)
Q Consensus        20 ~~~~~~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~-------~-~   89 (139)
                      ...+..+|++...+...+.+.+...++|++||+||++||+.|+...|.|.+++++++  ++.++.|+++.       . .
T Consensus        23 ~~~g~~~p~f~l~~~~G~~~~l~~~~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~v~vv~vs~d~~~~~e~~~~~  102 (181)
T 2p31_A           23 MQQEQDFYDFKAVNIRGKLVSLEKYRGSVSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAFPCNQFGQQEPDSNK  102 (181)
T ss_dssp             ----CCGGGCEEEBTTSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTCCCSCHH
T ss_pred             CCcCCccCceEeecCCCCEecHHHcCCCEEEEEEeccCCCCcHHHHHHHHHHHHHhhcCCEEEEEEECcCCCCCCCCCHH
Confidence            344555565554444444566666789999999999999999999999999999986  48999998753       1 1


Q ss_pred             ---hhhhh------------------------CCCccee-------E-EEEEeCCeEEEEEeCC-ChHHHHHHHHHHh
Q 032502           90 ---EFSTS------------------------WDIKATP-------T-FFFLKDGQQVDKLVGA-NKPELQKKVAAAV  131 (139)
Q Consensus        90 ---~~~~~------------------------~~v~~~P-------t-~~~~~~g~~~~~~~g~-~~~~l~~~i~~~~  131 (139)
                         .+.++                        |++..+|       + +++.++|+++.++.|. +.++|.+.|++++
T Consensus       103 ~~~~~~~~~~~~~~p~~~~~d~~g~~~~~~~~~~~~~~P~~~~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll  180 (181)
T 2p31_A          103 EIESFARRTYSVSFPMFSKIAVTGTGAHPAFKYLAQTSGKEPTWNFWKYLVAPDGKVVGAWDPTVSVEEVRPQITALV  180 (181)
T ss_dssp             HHHHHHHHHHCCCSCBBCCCCCSSTTSCHHHHHHHHHHSCCCCSTTCEEEECTTSCEEEEECTTSCHHHHHHHHHTTC
T ss_pred             HHHHHHHhhcCCCceeEeecccCCccchhhhhhhhhcCCCccccceeEEEEcCCCCEEEEeCCCCCHHHHHHHHHHHh
Confidence               11222                        2355688       4 5555999999999988 8888988888765

>2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius rotundicauda}

Probab=99.51  E-value=2.2e-18  Score=107.98  Aligned_cols=91  Identities=20%  Similarity=0.407  Sum_probs=70.9

Q ss_pred             EEeechhHHHHHHHHHh-hCCC-EEEEEEeCCCChhhhhhhHhHHHHHHhC----CCcEEEEEeCCcc------------
Q 032502           27 SLVTTKDIWDQKMSEAS-KEGK-IVIANFSATWCGPCRMIAPFFSELSEKY----PSLMFLLVDVDEL------------   88 (139)
Q Consensus        27 ~~i~~~~~~~~~~~~~~-~~~k-~vlv~f~~~~C~~C~~~~~~l~~~~~~~----~~v~~~~vd~~~~------------   88 (139)
                      +.+...+.....+.+.. .+++ ++||+||++||++|+.+.|.|.++++++    +++.++.|+++..            
T Consensus         5 p~~~l~~~~g~~~~l~~~~~gk~~vll~F~a~wC~~C~~~~~~l~~~~~~~~~~~~~~~v~~v~~d~~~~~~~~~~~~~~   84 (143)
T 2lus_A            5 QGIKLVKKNRCEVNANEALKDKDIIGFYFSAHWCPPCRGFTPILADMYSELVDDSAPFEIIFVSSDRSEDDMFQYMMESH   84 (143)
Confidence            33333333344555555 5688 9999999999999999999999999988    3688888887754            


Q ss_pred             -------------hhhhhhCCCcceeEEEEE-eCCeEEEEEeC
Q 032502           89 -------------VEFSTSWDIKATPTFFFL-KDGQQVDKLVG  117 (139)
Q Consensus        89 -------------~~~~~~~~v~~~Pt~~~~-~~g~~~~~~~g  117 (139)
                                   ..+++.|++.++|+++++ ++|+++.+..+
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~  127 (143)
T 2lus_A           85 GDWLAIPYRSGPASNVTAKYGITGIPALVIVKKDGTLISMNGR  127 (143)
Confidence                         367889999999999999 59999887533

>3dwv_A Glutathione peroxidase-like protein; alpha beta, 3-layer(ABA) sandwich, glutaredoxin fold, oxidor peroxidase; 1.41A {Trypanosoma brucei} PDB: 2rm5_A 2rm6_A 3e0u_A

Probab=99.68  E-value=4.6e-17  Score=106.83  Aligned_cols=114  Identities=18%  Similarity=0.198  Sum_probs=85.6

Q ss_pred             ccCCCceEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCC--CcEEEEEeCCc--------ch
Q 032502           20 EFAGGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP--SLMFLLVDVDE--------LV   89 (139)
Q Consensus        20 ~~~~~~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~--------~~   89 (139)
                      +..+.++|++...+...+.+.+...++|++||+||++||++|....|.|.+++++++  ++.++.|++|.        ..
T Consensus        20 ~~~~~~~p~f~l~d~~G~~~~l~~~~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~~~vi~is~d~~~~~e~~~~~   99 (187)
T 3dwv_A           20 MSAASSIFDFEVLDADHKPYNLVQHKGSPLLIYNVASKCGYTKGGYETATTLYNKYKSQGFTVLAFPSNQFGGQEPGNEE   99 (187)
T ss_dssp             CTTCCSGGGSCCBBTTSCBCCGGGGTTSCEEEEEECCBCSCCTTHHHHHHHHHHHHGGGTCEEEEEEBCCCSSCSSSBTT
T ss_pred             hcCCCccCCeEEEcCCCCEeeHHHhCCCEEEEEEecCCCCCcHHHHHHHHHHHHHhhhCCeEEEEEECcccCCCCCCCHH
Confidence            444556666665555555666677789999999999999999999999999999987  48898887652        11


Q ss_pred             hhh------------------------------------hhCCCccee---EEEEE-eCCeEEEEEeCC-ChHHHHHHHH
Q 032502           90 EFS------------------------------------TSWDIKATP---TFFFL-KDGQQVDKLVGA-NKPELQKKVA  128 (139)
Q Consensus        90 ~~~------------------------------------~~~~v~~~P---t~~~~-~~g~~~~~~~g~-~~~~l~~~i~  128 (139)
                      .+.                                    ..|++..+|   +++++ ++|+++.++.|. +.++|.+.|+
T Consensus       100 ~~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~l~~~~~~~~~~~~iP~~~~~~liD~~G~i~~~~~g~~~~~~l~~~i~  179 (187)
T 3dwv_A          100 EIKEFVCTKFKAEFPIMAKINVNGENAHPLYEYMKKTKPGILATKAIKWNFTSFLIDRDGVPVERFSPGASVKDIEEKLI  179 (187)
T ss_dssp             HHHHSCCBCCCCSSCBBCCBCCSCC-CCHHHHHHHHHSCCSBSSSSCCSTTCEEEECTTSCEEEEECTTCCHHHHHHHHH
T ss_pred             HHHHHHHhccCCCCceeeccccCCcchhHHHHHHHhhcCCccCCCccccceeEEEECCCCCEEEEECCCCCHHHHHHHHH
Confidence            111                                    122445677   66666 999999999998 8999999999


Q ss_pred             HHhhc
Q 032502          129 AAVDS  133 (139)
Q Consensus       129 ~~~~~  133 (139)
                      ++++.
T Consensus       180 ~lL~~  184 (187)
T 3dwv_A          180 PLLGS  184 (187)
T ss_dssp             HHC--
T ss_pred             HHHhc
Confidence            99874

>2v1m_A Glutathione peroxidase; selenium, selenocysteine, oxidoreductase, lipid peroxidase, schistosoma detoxification pathway; 1.00A {Schistosoma mansoni} PDB: 2wgr_A

Probab=99.68  E-value=3.9e-17  Score=104.96  Aligned_cols=98  Identities=15%  Similarity=0.259  Sum_probs=74.8

Q ss_pred             HHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCC--CcEEEEEeCCc-------c----hhh-hhhC------
Q 032502           36 DQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP--SLMFLLVDVDE-------L----VEF-STSW------   95 (139)
Q Consensus        36 ~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~-------~----~~~-~~~~------   95 (139)
                      .+.+.+...++|++||+||++||+.|+...+.|.+++++++  ++.++.|+++.       .    ..+ .+++      
T Consensus        21 G~~~~l~~~~gk~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (169)
T 2v1m_A           21 GVDVSLEKYRGHVCLIVNVACKCGATDKNYRQLQEMHTRLVGKGLRILAFPCNQFGGQEPWAEAEIKKFVTEKYGVQFDM  100 (169)
T ss_dssp             SCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSEE
T ss_pred             CCCccHHHcCCCEEEEEEeeccCCchHHHHHHHHHHHHHhhcCCeEEEEEECCccCCCCCCCHHHHHHHHHHhcCCCCce
Confidence            33455555679999999999999999999999999999986  49999998752       1    112 1211      


Q ss_pred             -----------------------C-----CcceeEEEEE-eCCeEEEEEeCC-ChHHHHHHHHHHhhc
Q 032502           96 -----------------------D-----IKATPTFFFL-KDGQQVDKLVGA-NKPELQKKVAAAVDS  133 (139)
Q Consensus        96 -----------------------~-----v~~~Pt~~~~-~~g~~~~~~~g~-~~~~l~~~i~~~~~~  133 (139)
                                             +     +..+|+++++ ++|+++.++.|. +.+++.+.|+++++.
T Consensus       101 ~~~~d~~~~~~~~~~~~l~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll~~  168 (169)
T 2v1m_A          101 FSKIKVNGSDADDLYKFLKSRQHGTLTNNIKWNFSKFLVDRQGQPVKRYSPTTAPYDIEGDIMELLEK  168 (169)
T ss_dssp             BCCCCCSSTTSCHHHHHHHHHSCCSSSCSCCSTTCEEEECTTSCEEEEECTTSCGGGGHHHHHHHHHC
T ss_pred             EEEEeecCccccHHHHHHHhhcCCccCCcccccceEEEECCCCCEEEEcCCCCCHHHHHHHHHHHhcc
Confidence                                   3     3334766555 999999999988 889999999998764

>1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC, oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP: c.47.1.10

Probab=99.68  E-value=4.5e-17  Score=106.73  Aligned_cols=95  Identities=23%  Similarity=0.219  Sum_probs=80.1

Q ss_pred             HHHHhhCCCEEEEEEe-CCCChhhhhhhHhHHHHHHhCC--CcEEEEEeCCc-------------------------chh
Q 032502           39 MSEASKEGKIVIANFS-ATWCGPCRMIAPFFSELSEKYP--SLMFLLVDVDE-------------------------LVE   90 (139)
Q Consensus        39 ~~~~~~~~k~vlv~f~-~~~C~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~-------------------------~~~   90 (139)
                      +.+...++|++||+|| ++||+.|+...+.|.++++++.  ++.++.|+.|.                         +..
T Consensus        24 ~~l~~~~gk~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  103 (187)
T 1we0_A           24 VTEADLKGKWSIVVFYPADFSFVCPTELEDVQKEYAELKKLGVEVYSVSTDTHFVHKAWHENSPAVGSIEYIMIGDPSQT  103 (187)
T ss_dssp             EETTTTSSSEEEEEECSCTTCSSCTHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHHSCHHHHTCCSEEEECTTCH
T ss_pred             ecHHHHCCCCEEEEEECCCCCcchHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHHhccccCCCceEEECCchH
Confidence            4444567899999999 9999999999999999998886  69999998874                         345


Q ss_pred             hhhhCCCc------ceeEEEEE-eCCeEEEEEeCC-----ChHHHHHHHHHHhhc
Q 032502           91 FSTSWDIK------ATPTFFFL-KDGQQVDKLVGA-----NKPELQKKVAAAVDS  133 (139)
Q Consensus        91 ~~~~~~v~------~~Pt~~~~-~~g~~~~~~~g~-----~~~~l~~~i~~~~~~  133 (139)
                      +++.|++.      .+|+++++ ++|+++.++.|.     +.+++.+.|+++...
T Consensus       104 ~~~~~~v~~~~~g~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l~~~l~~l~~~  158 (187)
T 1we0_A          104 ISRQFDVLNEETGLADRGTFIIDPDGVIQAIEINADGIGRDASTLINKVKAAQYV  158 (187)
T ss_dssp             HHHHTTCEETTTTEECEEEEEECTTSBEEEEEEECTTSCCCTTHHHHHHHHHHHH
T ss_pred             HHHHhCCCcCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHHhhh
Confidence            67889998      99998888 899999998775     578899988888753

>3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane, oxidoreductase, transmembrane; 1.80A {Homo sapiens} SCOP: c.47.1.0 PDB: 3cyn_A

Probab=99.67  E-value=2.6e-17  Score=107.30  Aligned_cols=116  Identities=16%  Similarity=0.160  Sum_probs=84.7

Q ss_pred             CcccCCCceEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCC--cEEEEEeCCc-------c
Q 032502           18 PVEFAGGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS--LMFLLVDVDE-------L   88 (139)
Q Consensus        18 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~--v~~~~vd~~~-------~   88 (139)
                      .....+.+++++...+...+.+.+...++|++||+||++||+.|+...|.|.+++++|++  +.++.|+++.       .
T Consensus        10 ~~~~~~~~~p~f~l~d~~G~~v~l~~~~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~~~vi~is~d~~~~~~~d~   89 (180)
T 3kij_A           10 FLKPKINSFYAFEVKDAKGRTVSLEKYKGKVSLVVNVASDCQLTDRNYLGLKELHKEFGPSHFSVLAFPCNQFGESEPRP   89 (180)
T ss_dssp             CCCCCCCCGGGCEEEBTTSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHTTTSEEEEEEECCCSTTCCCSC
T ss_pred             hhcCCcCcccceEEecCCCCEecHHHcCCCEEEEEEEecCCCCcHHHHHHHHHHHHHhccCCeEEEEEECCccccCCCCC
Confidence            344556666666655555556667777899999999999999999999999999999874  8888887653       1


Q ss_pred             ----hhhhhh-CCCc--------------------------ceeE-----EEEEeCCeEEEEEeCC-ChHHHHHHHHHHh
Q 032502           89 ----VEFSTS-WDIK--------------------------ATPT-----FFFLKDGQQVDKLVGA-NKPELQKKVAAAV  131 (139)
Q Consensus        89 ----~~~~~~-~~v~--------------------------~~Pt-----~~~~~~g~~~~~~~g~-~~~~l~~~i~~~~  131 (139)
                          ..+.++ +++.                          ++|+     +++.++|+++.++.|. +.+.+.+.|.+++
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~p~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~i~~lL  169 (180)
T 3kij_A           90 SKEVESFARKNYGVTFPIFHKIKILGSEGEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFWRPEEPIEVIRPDIAALV  169 (180)
T ss_dssp             HHHHHHHHHHHHCCCSCBBCCCCCSSTTCCHHHHHHHHHHTCCCSSTTCEEEECTTSCEEEEECTTCCGGGTHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCCceeeeeeccCccccHHHHHHHhcCCCCccccceEEEECCCCCEEEEECCCCCHHHHHHHHHHHH
Confidence                223333 3321                          2564     5666999999999987 7777777777666


Q ss_pred             hc
Q 032502          132 DS  133 (139)
Q Consensus       132 ~~  133 (139)
                      +.
T Consensus       170 ~~  171 (180)
T 3kij_A          170 RQ  171 (180)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A

Probab=99.67  E-value=9.8e-17  Score=102.44  Aligned_cols=99  Identities=14%  Similarity=0.123  Sum_probs=77.5

Q ss_pred             ccCCCceEEeechhHHHHHHHHHhhCCC-EEEEEEe-CCCChhhhhhhHhHHHHHHhCC--CcEEEEEeCCc--------
Q 032502           20 EFAGGNVSLVTTKDIWDQKMSEASKEGK-IVIANFS-ATWCGPCRMIAPFFSELSEKYP--SLMFLLVDVDE--------   87 (139)
Q Consensus        20 ~~~~~~~~~i~~~~~~~~~~~~~~~~~k-~vlv~f~-~~~C~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~--------   87 (139)
                      ...|..+|++...+...+.+.+....++ ++||+|| ++||+.|+...+.|.++++++.  ++.++.|+.|.        
T Consensus         9 ~~~G~~~p~f~l~~~~G~~~~l~~~~gk~~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~   88 (160)
T 1xvw_A            9 LNVGATAPDFTLRDQNQQLVTLRGYRGAKNVLLVFFPLAFTGICQGELDQLRDHLPEFENDDSAALAISVGPPPTHKIWA   88 (160)
T ss_dssp             CCTTSBCCCCEEECTTSCEEEGGGGTTTCEEEEEECSCTTSSHHHHHHHHHHHTGGGTSSSSEEEEEEESCCHHHHHHHH
T ss_pred             CCCCCCCCCeEeEcCCCCEEeHHHhcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCcEEEEEeCCCHHHHHHHH
Confidence            3445556665544444445556666787 9999998 9999999999999999999985  59999998864        


Q ss_pred             ---------------chhhhhhCCCc----cee--EEEEE-eCCeEEEEEeCC
Q 032502           88 ---------------LVEFSTSWDIK----ATP--TFFFL-KDGQQVDKLVGA  118 (139)
Q Consensus        88 ---------------~~~~~~~~~v~----~~P--t~~~~-~~g~~~~~~~g~  118 (139)
                                     +..+.+.|++.    ++|  +++++ ++|+++.++.|.
T Consensus        89 ~~~~~~~~~~~d~~~~~~~~~~~~v~~~~~~~p~~~~~lid~~G~i~~~~~g~  141 (160)
T 1xvw_A           89 TQSGFTFPLLSDFWPHGAVSQAYGVFNEQAGIANRGTFVVDRSGIIRFAEMKQ  141 (160)
T ss_dssp             HHHTCCSCEEECTTTTTHHHHHTTCEETTTTEECSEEEEECTTSBEEEEEECC
T ss_pred             HhcCCCceEEecCCcChHHHHHcCCccccCCCeeeeEEEECCCCeEEEEEecC
Confidence                           55678899998    999  55555 999999998886

>2p5q_A Glutathione peroxidase 5; thioredoxin fold, oxidoreductase; 2.00A {Populus trichocarpa x populusdeltoides} PDB: 2p5r_A

Probab=99.67  E-value=4.1e-17  Score=104.97  Aligned_cols=97  Identities=22%  Similarity=0.343  Sum_probs=75.8

Q ss_pred             HHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCC--CcEEEEEeCCc--------c---hhhhh-hC-------
Q 032502           37 QKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP--SLMFLLVDVDE--------L---VEFST-SW-------   95 (139)
Q Consensus        37 ~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~--------~---~~~~~-~~-------   95 (139)
                      +.+.+...++|++||+||++||+.|+...+.|.++++++.  ++.++.|++|.        .   ..+.+ +|       
T Consensus        23 ~~~~l~~~~gk~vll~f~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (170)
T 2p5q_A           23 NDVDLSIFKGKVLLIVNVASKCGMTNSNYAEMNQLYEKYKDQGLEILAFPCNQFGEEEPGTNDQITDFVCTRFKSEFPIF  102 (170)
T ss_dssp             CEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCTTTTCCCSCHHHHHHHHHHHTCCCSCBB
T ss_pred             CEecHHHhCCCEEEEEEEeccCCccHHHHHHHHHHHHHhccCCEEEEEEECCCCCCCCCCCHHHHHHHHHHhcCCCceeE
Confidence            3445555679999999999999999999999999999986  49999998752        1   11222 22       


Q ss_pred             ----------------------CC--ccee---EEEEE-eCCeEEEEEeCC-ChHHHHHHHHHHhhc
Q 032502           96 ----------------------DI--KATP---TFFFL-KDGQQVDKLVGA-NKPELQKKVAAAVDS  133 (139)
Q Consensus        96 ----------------------~v--~~~P---t~~~~-~~g~~~~~~~g~-~~~~l~~~i~~~~~~  133 (139)
                                            ++  .++|   +++++ ++|+++.++.|. +.+++.+.|+++++.
T Consensus       103 ~~~d~~~~~~~~~~~~l~~~~~~~~~~~~p~~~~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll~~  169 (170)
T 2p5q_A          103 DKIDVNGENASPLYRFLKLGKWGIFGDDIQWNFAKFLVNKDGQVVDRYYPTTSPLSLERDIKQLLEI  169 (170)
T ss_dssp             CCCBSSSTTBCHHHHHHHTHHHHTTCSCCCSTTCEEEECTTSCEEEEECTTSCGGGGHHHHHHHTTC
T ss_pred             eeeccCCCchHHHHHHHHhcCCCccCCcccccccEEEECCCCCEEEeeCCCCCHHHHHHHHHHHhhc
Confidence                                  34  5678   65555 999999999998 888999999998753

>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A

Probab=99.66  E-value=1.3e-15  Score=102.55  Aligned_cols=88  Identities=10%  Similarity=0.067  Sum_probs=74.0

Q ss_pred             CCEEEEEEe-----CCCChhhhhhhHhHHHHHHhC---CCcEEEEEeCCcchhhhhhCCCcceeEEEEEeCCeEEEEEeC
Q 032502           46 GKIVIANFS-----ATWCGPCRMIAPFFSELSEKY---PSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVG  117 (139)
Q Consensus        46 ~k~vlv~f~-----~~~C~~C~~~~~~l~~~~~~~---~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g  117 (139)
                      .++++|.||     ++||++|+.+.|.+.++++.+   +.+.++.+|++++++++++|+|.++||+++|++|+...++.|
T Consensus        20 ~~~v~v~~~~~~~~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Ptl~~~~~~~~~~~~~G   99 (229)
T 2ywm_A           20 KEPVSIKLFSQAIGCESCQTAEELLKETVEVIGEAVGQDKIKLDIYSPFTHKEETEKYGVDRVPTIVIEGDKDYGIRYIG   99 (229)
T ss_dssp             CSCEEEEEECCCTTCGGGGHHHHHHHHHHHHHHHHHCTTTEEEEEECTTTCHHHHHHTTCCBSSEEEEESSSCCCEEEES
T ss_pred             cCCeEEEEEccCCCCcccHHHHHHHHHHHHHHhccCCCCceEEEEecCcccHHHHHHcCCCcCcEEEEECCCcccceecC
Confidence            345555555     788889999999998887665   359999999999999999999999999999988888888889


Q ss_pred             C-ChHHHHHHHHHHhhc
Q 032502          118 A-NKPELQKKVAAAVDS  133 (139)
Q Consensus       118 ~-~~~~l~~~i~~~~~~  133 (139)
                      . +.+++..++..++..
T Consensus       100 ~~~~~~l~~~~~~~~~~  116 (229)
T 2ywm_A          100 LPAGLEFTTLINGIFHV  116 (229)
T ss_dssp             CCCTTHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHhc
Confidence            8 888899998887653

>2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system, oxidoreductase, structural proteomics in EURO spine; 2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=99.66  E-value=8.1e-17  Score=106.27  Aligned_cols=95  Identities=19%  Similarity=0.218  Sum_probs=79.0

Q ss_pred             HHHHHhhCCCEEEEEEe-CCCChhhhhhhHhHHHHHHhCC--CcEEEEEeCCc-------------------------ch
Q 032502           38 KMSEASKEGKIVIANFS-ATWCGPCRMIAPFFSELSEKYP--SLMFLLVDVDE-------------------------LV   89 (139)
Q Consensus        38 ~~~~~~~~~k~vlv~f~-~~~C~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~-------------------------~~   89 (139)
                      .+.+....+|++||+|| ++||+.|+...+.|.+++++++  ++.++.|+.|.                         +.
T Consensus        37 ~v~l~~~~gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~  116 (195)
T 2bmx_A           37 TITSDEHPGKWRVVFFWPKDFTFVCPTEIAAFSKLNDEFEDRDAQILGVSIDSEFAHFQWRAQHNDLKTLPFPMLSDIKR  116 (195)
T ss_dssp             EEETTSSTTCEEEEEECSCTTSCCCHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHHCTTGGGCCSCEEECTTS
T ss_pred             EeeHHHhCCCcEEEEEEcCCCCCCcHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHhccccCCceeEEeCCch
Confidence            34444557899999999 9999999999999999998886  59999998874                         23


Q ss_pred             hhhhhCCCc-----ceeEEEEE-eCCeEEEEEeCC-----ChHHHHHHHHHHhh
Q 032502           90 EFSTSWDIK-----ATPTFFFL-KDGQQVDKLVGA-----NKPELQKKVAAAVD  132 (139)
Q Consensus        90 ~~~~~~~v~-----~~Pt~~~~-~~g~~~~~~~g~-----~~~~l~~~i~~~~~  132 (139)
                      .+.+.|++.     .+|+++++ ++|+++.++.|.     +.+++.+.|++++.
T Consensus       117 ~~~~~~~v~~~~g~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l~~~l~~l~~  170 (195)
T 2bmx_A          117 ELSQAAGVLNADGVADRVTFIVDPNNEIQFVSATAGSVGRNVDEVLRVLDALQS  170 (195)
T ss_dssp             HHHHHHTCBCTTSSBCEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHHHC
T ss_pred             HHHHHhCCcccCCCccceEEEEcCCCeEEEEEecCCCCCCCHHHHHHHHHHHhh
Confidence            567789999     99998888 899999998765     47888888888764

>1zof_A Alkyl hydroperoxide-reductase; decamer, toroide-shaped complex, oxidoreductase; 2.95A {Helicobacter pylori} SCOP: c.47.1.10

Probab=99.64  E-value=1.5e-16  Score=105.20  Aligned_cols=94  Identities=17%  Similarity=0.217  Sum_probs=77.9

Q ss_pred             HHHHhh-CCCEEEEEEe-CCCChhhhhhhHhHHHHHHhCC--CcEEEEEeCCc---------------------------
Q 032502           39 MSEASK-EGKIVIANFS-ATWCGPCRMIAPFFSELSEKYP--SLMFLLVDVDE---------------------------   87 (139)
Q Consensus        39 ~~~~~~-~~k~vlv~f~-~~~C~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~---------------------------   87 (139)
                      +.+... ++|++||+|| ++||+.|+.+.+.|.++++++.  ++.++.|+.|.                           
T Consensus        25 v~l~~~~~gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d  104 (198)
T 1zof_A           25 FELSKNLGKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEKGFNVIGVSIDSEQVHFAWKNTPVEKGGIGQVSFPMVAD  104 (198)
T ss_dssp             EETTTSCCSSEEEEEECSCTTCSSCCTHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCCCSSCEEEC
T ss_pred             EEHHHHhCCCcEEEEEECCCCCCchHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHhhhhcccccCceeEEEEC
Confidence            444555 7899999999 9999999999999999988875  58999998874                           


Q ss_pred             -chhhhhhCCCc-----ceeEEEEE-eCCeEEEEEeCC-----ChHHHHHHHHHHhh
Q 032502           88 -LVEFSTSWDIK-----ATPTFFFL-KDGQQVDKLVGA-----NKPELQKKVAAAVD  132 (139)
Q Consensus        88 -~~~~~~~~~v~-----~~Pt~~~~-~~g~~~~~~~g~-----~~~~l~~~i~~~~~  132 (139)
                       +..+.+.|++.     .+|+++++ ++|+++.++.|.     +.+++.+.|+++..
T Consensus       105 ~~~~~~~~~~v~~~~g~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l~~~l~~l~~  161 (198)
T 1zof_A          105 ITKSISRDYDVLFEEAIALRGAFLIDKNMKVRHAVINDLPLGRNADEMLRMVDALLH  161 (198)
T ss_dssp             TTSHHHHHTTCEETTTEECEEEEEEETTTEEEEEEEESSSCCCHHHHHHHHHHHHHH
T ss_pred             CchHHHHHhCCcccCCcccceEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHHHH
Confidence             34577889998     99988877 899999998764     46788888888763

>2jsy_A Probable thiol peroxidase; solution structure, antioxidant, oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A

Probab=99.64  E-value=7.3e-16  Score=99.11  Aligned_cols=111  Identities=19%  Similarity=0.198  Sum_probs=84.2

Q ss_pred             cCCCceEEeechhHHHHHHHHHhhCCCEEEEEEeCCC-ChhhhhhhHhHHHHHHhCCCcEEEEEeCCc------------
Q 032502           21 FAGGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATW-CGPCRMIAPFFSELSEKYPSLMFLLVDVDE------------   87 (139)
Q Consensus        21 ~~~~~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~-C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~------------   87 (139)
                      ..|..+|++...+...+.+.+...++|++||+||++| |+.|+...+.|.++++++.++.++.|+.|.            
T Consensus        19 ~~G~~~p~f~l~~~~G~~~~l~~~~gk~~vl~F~~~~~C~~C~~~~~~l~~l~~~~~~~~vv~is~d~~~~~~~~~~~~~   98 (167)
T 2jsy_A           19 KVGDQAPDFTVLTNSLEEKSLADMKGKVTIISVIPSIDTGVCDAQTRRFNEEAAKLGDVNVYTISADLPFAQARWCGANG   98 (167)
T ss_dssp             CTTSCCCCCEEEBTTCCEEEHHHHTTSCEEEEECSCSTTSHHHHTHHHHHHHHHHHSSCEEEEEECSSGGGTSCCGGGSS
T ss_pred             CCCCcCCceEEECCCCCEeeHHHhCCCeEEEEEecCCCCCchHHHHHHHHHHHHHcCCCEEEEEECCCHHHHHHHHHhcC
Confidence            4455566655444434445555667899999999999 999999999999999988779999998863            


Q ss_pred             -----------chhhhhhCCCcc------eeEEEEE-eCCeEEEEEeCC------ChHHHHHHHHHHh
Q 032502           88 -----------LVEFSTSWDIKA------TPTFFFL-KDGQQVDKLVGA------NKPELQKKVAAAV  131 (139)
Q Consensus        88 -----------~~~~~~~~~v~~------~Pt~~~~-~~g~~~~~~~g~------~~~~l~~~i~~~~  131 (139)
                                 ...+.+.|++..      +|+++++ ++|+++.++.|.      +.+++.+.|++++
T Consensus        99 ~~~~~~~~d~~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~i~~~~~g~~~~~~~~~~~l~~~l~~ll  166 (167)
T 2jsy_A           99 IDKVETLSDHRDMSFGEAFGVYIKELRLLARSVFVLDENGKVVYAEYVSEATNHPNYEKPIEAAKALV  166 (167)
T ss_dssp             CTTEEEEEGGGTCHHHHHTTCBBTTTCSBCCEEEEECTTSCEEEEEECSBTTSCCCSHHHHHHHHHHH
T ss_pred             CCCceEeeCCchhHHHHHhCCccccCCceeeEEEEEcCCCcEEEEEecCCcCCCCCHHHHHHHHHHhh
Confidence                       234667788876      4877776 899999998753      3477888887775

>2f8a_A Glutathione peroxidase 1; thioredoxin fold, structural genomics, structural genomics consortium, SGC, oxidoreductase; 1.50A {Homo sapiens} SCOP: c.47.1.10 PDB: 1gp1_A 2he3_A

Probab=99.63  E-value=3.9e-16  Score=104.17  Aligned_cols=97  Identities=15%  Similarity=0.185  Sum_probs=74.0

Q ss_pred             HHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCC--CcEEEEEeCCc--------chh---hhh------hCC
Q 032502           36 DQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP--SLMFLLVDVDE--------LVE---FST------SWD   96 (139)
Q Consensus        36 ~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~--------~~~---~~~------~~~   96 (139)
                      .+.+.+...++|++||+||++||+.|+...|.|.+++++|.  ++.++.|++++        ...   +++      +|+
T Consensus        37 G~~v~l~~~~Gk~vlv~FwatwC~~C~~e~p~l~~l~~~~~~~g~~vv~v~~d~~~~~e~d~~~~i~~f~~~~~~~~~~~  116 (208)
T 2f8a_A           37 GEPVSLGSLRGKVLLIENVASLGGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQENAKNEEILNSLKYVRPGGGFE  116 (208)
T ss_dssp             SSCEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTTTCSCHHHHHHHHHHTSSCTTCC
T ss_pred             CCCccHHHcCCCEEEEEEECCCCccHHHHHHHHHHHHHHccCCCeEEEEEECCcccccCCCCHHHHHHHHHhcccccccc
Confidence            34455566789999999999999999999999999999886  48999998751        111   222      333


Q ss_pred             C-----------------------------------------------------cceeEEEEE-eCCeEEEEEeCC-ChH
Q 032502           97 I-----------------------------------------------------KATPTFFFL-KDGQQVDKLVGA-NKP  121 (139)
Q Consensus        97 v-----------------------------------------------------~~~Pt~~~~-~~g~~~~~~~g~-~~~  121 (139)
                      +                                                     ...|+++++ ++|+++.++.|. +.+
T Consensus       117 ~~fp~l~d~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~tflID~~G~i~~~~~g~~~~~  196 (208)
T 2f8a_A          117 PNFMLFEKCEVNGAGAHPLFAFLREALPAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGPDGVPLRRYSRRFQTI  196 (208)
T ss_dssp             CSSEEBCCCCCSSTTCCHHHHHHHHHSCSCTTCSSCCCSSGGGCCSSSCCTTCCCSTTCEEEECTTSCEEEEECTTSCGG
T ss_pred             cceEEEEEeecCCCCccHHHHHHHhcCCCccccchhhccccccccccccccCccccCceEEEEcCCCcEEEEeCCCCCHH
Confidence            2                                                     223755555 999999999988 888


Q ss_pred             HHHHHHHHHhh
Q 032502          122 ELQKKVAAAVD  132 (139)
Q Consensus       122 ~l~~~i~~~~~  132 (139)
                      +|.+.|+++++
T Consensus       197 ~l~~~I~~ll~  207 (208)
T 2f8a_A          197 DIEPDIEALLS  207 (208)
T ss_dssp             GGHHHHHHHHC
T ss_pred             HHHHHHHHHhh
Confidence            99999998874

>1xvq_A Thiol peroxidase; thioredoxin fold, structural genomics, PSI, protein structur initiative, TB structural genomics consortium, TBSGC; 1.75A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1y25_A

Probab=99.62  E-value=7.4e-16  Score=100.05  Aligned_cols=112  Identities=17%  Similarity=0.151  Sum_probs=85.0

Q ss_pred             ccCCCceEEeechhHHHHHHHHHhhCCCEEEEEEeCCC-ChhhhhhhHhHHHHHHhCCCcEEEEEeCCc-----------
Q 032502           20 EFAGGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATW-CGPCRMIAPFFSELSEKYPSLMFLLVDVDE-----------   87 (139)
Q Consensus        20 ~~~~~~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~-C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~-----------   87 (139)
                      ...|..+|++...+...+.+.+...++|++||+||+.| |+.|+...|.|.+++++ .++.++.|+.|.           
T Consensus        18 l~~G~~~P~f~l~~~~G~~v~l~~~~gk~vvl~F~~t~~C~~C~~~~~~l~~l~~~-~~v~vv~Is~D~~~~~~~~~~~~   96 (175)
T 1xvq_A           18 PAVGSPAPAFTLTGGDLGVISSDQFRGKSVLLNIFPSVDTPVCATSVRTFDERAAA-SGATVLCVSKDLPFAQKRFCGAE   96 (175)
T ss_dssp             CCTTSBCCCCEEECTTSCEEEGGGGTTSCEEEEECSCCCSSCCCHHHHHHHHHHHH-TTCEEEEEESSCHHHHTTCC---
T ss_pred             CCcCCcCCCeEEECCCCCEEeHHHcCCCEEEEEEEeCCCCchHHHHHHHHHHHHhh-cCCEEEEEECCCHHHHHHHHHHc
Confidence            34566667666554444556666667999999999999 99999999999999988 789999998872           


Q ss_pred             -----------chhhhhhCCCcce---------eEEEEE-eCCeEEEEEeC--C-ChHHHHHHHHHHhh
Q 032502           88 -----------LVEFSTSWDIKAT---------PTFFFL-KDGQQVDKLVG--A-NKPELQKKVAAAVD  132 (139)
Q Consensus        88 -----------~~~~~~~~~v~~~---------Pt~~~~-~~g~~~~~~~g--~-~~~~l~~~i~~~~~  132 (139)
                                 ...+.+.|++...         |+++++ ++|+++..+.|  . ..+++.+.|+.+.+
T Consensus        97 ~~~~~~~l~D~~~~~~~~~gv~~~~~~~~g~~~p~~~lid~~G~I~~~~~g~~~~~~~~~~~~l~~l~~  165 (175)
T 1xvq_A           97 GTENVMPASAFRDSFGEDYGVTIADGPMAGLLARAIVVIGADGNVAYTELVPEIAQEPNYEAALAALGA  165 (175)
T ss_dssp             ---CEEEEECTTSSHHHHTTCBBCSSTTTTSBCSEEEEECTTSBEEEEEECSBTTCCCCHHHHHHHHHH
T ss_pred             CCCCceEeeCCHHHHHHHhCCcccccccCCcccceEEEECCCCeEEEEEECCCcCCCCCHHHHHHHHHh
Confidence                       2356778998877         776666 89999999864  3 45567777766543

>2gs3_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase; GSHPX-4,phospholipid hydroperoxide; 1.90A {Homo sapiens}

Probab=99.62  E-value=4.7e-16  Score=101.81  Aligned_cols=111  Identities=18%  Similarity=0.206  Sum_probs=80.6

Q ss_pred             cCCCceEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCC--CcEEEEEeCCc--------c--
Q 032502           21 FAGGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP--SLMFLLVDVDE--------L--   88 (139)
Q Consensus        21 ~~~~~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~--------~--   88 (139)
                      ..+..+|++...+...+.+.+...++|++||.||++||+.|+...|.|.+++++++  ++.++.|++|.        .  
T Consensus        24 ~~g~~~p~f~l~~~~G~~v~l~~~~Gk~vlv~F~atwC~~C~~~~~~l~~l~~~~~~~~v~vv~is~d~~~~~~~~~~~~  103 (185)
T 2gs3_A           24 RCARSMHEFSAKDIDGHMVNLDKYRGFVCIVTNVASQGGKTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQEPGSNEE  103 (185)
T ss_dssp             GGCCCGGGCEEEBTTSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCTTTTCCCSCHHH
T ss_pred             cCCCCcCCceeEcCCCCEeeHHHcCCCEEEEEEecCCCCchHHHHHHHHHHHHHhhcCCeEEEEEECcccCCCCCCCHHH
Confidence            34555555554444445566666789999999999999999999999999999886  48999998752        0  


Q ss_pred             -hhhhhhC-------------------------------CCc-----ceeEEEEE-eCCeEEEEEeCC-ChHHHHHHHHH
Q 032502           89 -VEFSTSW-------------------------------DIK-----ATPTFFFL-KDGQQVDKLVGA-NKPELQKKVAA  129 (139)
Q Consensus        89 -~~~~~~~-------------------------------~v~-----~~Pt~~~~-~~g~~~~~~~g~-~~~~l~~~i~~  129 (139)
                       ..+++++                               ++.     .+|+++++ ++|+++.++.|. +.++|.+.|++
T Consensus       104 ~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~l~~~~~~~g~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~  183 (185)
T 2gs3_A          104 IKEFAAGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDKNGCVVKRYGPMEEPLVIEKDLPH  183 (185)
T ss_dssp             HHHHHHHTTCCSEEBCCCBSSSTTBCHHHHHHTTSGGGCCSSSSSCCSSCCEEEECTTSCEEEEECTTSCGGGGGGGHHH
T ss_pred             HHHHHHHcCCCCeeeeeeccCChhhhHHHHHHHhhcccccccCCcccccceEEEECCCCCEEEeeCCCCCHHHHHHHHHH
Confidence             1122222                               222     24776666 999999999888 88888888877


Q ss_pred             Hh
Q 032502          130 AV  131 (139)
Q Consensus       130 ~~  131 (139)
                      ++
T Consensus       184 lL  185 (185)
T 2gs3_A          184 YF  185 (185)
T ss_dssp             HC
T ss_pred             hC
Confidence            64

>1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase; 2.8A {Trypanosoma cruzi} SCOP: c.47.1.10

Probab=99.61  E-value=9e-16  Score=101.77  Aligned_cols=94  Identities=18%  Similarity=0.181  Sum_probs=77.7

Q ss_pred             HHHHHhhCCCEEEEEEe-CCCChhhhhhhHhHHHHHHhCC--CcEEEEEeCCc---------------------------
Q 032502           38 KMSEASKEGKIVIANFS-ATWCGPCRMIAPFFSELSEKYP--SLMFLLVDVDE---------------------------   87 (139)
Q Consensus        38 ~~~~~~~~~k~vlv~f~-~~~C~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~---------------------------   87 (139)
                      .+.+....+|++||+|| ++||+.|....+.|.++++++.  ++.++.|+.|.                           
T Consensus        28 ~v~l~~~~gk~vvl~F~~~~~C~~C~~~~~~l~~l~~~~~~~~v~vi~Is~D~~~~~~~~~~~~~~~~~~~~~~~p~l~D  107 (202)
T 1uul_A           28 KVALTSYKGKWLVLFFYPMDFTFVCPTEICQFSDRVKEFSDIGCEVLACSMDSEYSHLAWTSIERKRGGLGQMNIPILAD  107 (202)
T ss_dssp             EEEGGGGTTSEEEEEECSCTTCSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSCEEEC
T ss_pred             EEEHHHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhhCCCCCCceeEEEC
Confidence            34455567899999999 9999999999999999999884  69999998874                           


Q ss_pred             -chhhhhhCCCc------ceeEEEEE-eCCeEEEEEeCC-----ChHHHHHHHHHHh
Q 032502           88 -LVEFSTSWDIK------ATPTFFFL-KDGQQVDKLVGA-----NKPELQKKVAAAV  131 (139)
Q Consensus        88 -~~~~~~~~~v~------~~Pt~~~~-~~g~~~~~~~g~-----~~~~l~~~i~~~~  131 (139)
                       ...+++.|++.      .+|+++++ ++|+++.++.|.     +.+++.+.|+++.
T Consensus       108 ~~~~~~~~ygv~~~~~g~~~P~~~lid~~G~i~~~~~g~~~~~~~~~ell~~l~~l~  164 (202)
T 1uul_A          108 KTKCIMKSYGVLKEEDGVAYRGLFIIDPKQNLRQITVNDLPVGRDVDEALRLVKAFQ  164 (202)
T ss_dssp             TTCHHHHHHTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHHH
T ss_pred             CchHHHHHcCCccCCCCceeeEEEEECCCCEEEEEEeCCCCCCCCHHHHHHHHHHhh
Confidence             23567789998      99987777 899999987764     3588888888876

>1wjk_A C330018D20RIK protein; glutaredoxin, thioredoxin fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1

Probab=99.61  E-value=1.2e-15  Score=90.66  Aligned_cols=84  Identities=17%  Similarity=0.289  Sum_probs=68.3

Q ss_pred             CCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCC--cchhhhhhCCCcceeEEEEEeCCeEEEEEeCCChHH
Q 032502           45 EGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVD--ELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPE  122 (139)
Q Consensus        45 ~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~--~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~  122 (139)
                      ...++|+.|+++||++|+.+.+.|+++..   ++.|..+|++  +++++.++|| .++|+++  .+|+.+ ...|.+.++
T Consensus        14 ~~~~~v~~f~~~~C~~C~~~~~~L~~l~~---~i~~~~vdi~~~~~~el~~~~g-~~vP~l~--~~g~~~-~~~g~~~~~   86 (100)
T 1wjk_A           14 RALPVLTLFTKAPCPLCDEAKEVLQPYKD---RFILQEVDITLPENSTWYERYK-FDIPVFH--LNGQFL-MMHRVNTSK   86 (100)
T ss_dssp             CCCCEEEEEECSSCHHHHHHHHHTSTTSS---SSEEEEEETTSSTTHHHHHHSS-SSCSEEE--ESSSEE-EESSCCHHH
T ss_pred             CCCCEEEEEeCCCCcchHHHHHHHHHhhh---CCeEEEEECCCcchHHHHHHHC-CCCCEEE--ECCEEE-EecCCCHHH
Confidence            35678889999999999999999987643   4899999998  7889999999 9999864  478765 445669999


Q ss_pred             HHHHHHHHhhccC
Q 032502          123 LQKKVAAAVDSVV  135 (139)
Q Consensus       123 l~~~i~~~~~~~~  135 (139)
                      |.++|.+++...+
T Consensus        87 l~~~l~~~~~~~~   99 (100)
T 1wjk_A           87 LEKQLRKLSGPSS   99 (100)
T ss_dssp             HHHHHHSSSCSSC
T ss_pred             HHHHHHHHHhhcc
Confidence            9999987765543

>2obi_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase (GPX4); human GPX4, selenoprotein, thioredoxin-fold, anti-oxidatve defense system; 1.55A {Homo sapiens}

Probab=99.61  E-value=2.7e-16  Score=102.70  Aligned_cols=110  Identities=21%  Similarity=0.297  Sum_probs=78.7

Q ss_pred             cCCCceEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCC--CcEEEEEeCCc-------c-h-
Q 032502           21 FAGGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP--SLMFLLVDVDE-------L-V-   89 (139)
Q Consensus        21 ~~~~~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~-------~-~-   89 (139)
                      ..|..+|++...+...+.+.+...++|++||+||++||+.|+...+.|.++++++.  ++.++.|+++.       . . 
T Consensus        22 ~~g~~~p~f~l~~~~G~~~~l~~~~gk~vll~F~atwC~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~e~~~~~~  101 (183)
T 2obi_A           22 RCARSMHEFSAKDIDGHMVNLDKYRGFVCIVTNVASQCGKTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQEPGSNEE  101 (183)
T ss_dssp             GGCCSGGGCEEEBTTSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTCCCSCHHH
T ss_pred             cccCcccceEEEcCCCCEeeHHHcCCCEEEEEEeCCCCCCcHHHHHHHHHHHHHHhcCCeEEEEEECCCCCCCCCCCHHH
Confidence            34445555554443344556666789999999999999999999999999999986  48999998752       1 1 


Q ss_pred             --hhhhh---------------------C----------C-----CcceeEEEEE-eCCeEEEEEeCC-ChHHHHHHHHH
Q 032502           90 --EFSTS---------------------W----------D-----IKATPTFFFL-KDGQQVDKLVGA-NKPELQKKVAA  129 (139)
Q Consensus        90 --~~~~~---------------------~----------~-----v~~~Pt~~~~-~~g~~~~~~~g~-~~~~l~~~i~~  129 (139)
                        .+.++                     |          +     +..+|+++++ ++|+++.++.|. +.++|.+.|++
T Consensus       102 ~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~l~~~~~~~g~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~  181 (183)
T 2obi_A          102 IKEFAAGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDKNGCVVKRYGPMEEPLVIEKDLPH  181 (183)
T ss_dssp             HHHHHHTTTCCSEEBCCCCCSSTTSCHHHHHHHTSTTTCCSSSSSCCSTTCEEEECTTSCEEEEECTTSCTHHHHTTSGG
T ss_pred             HHHHHHHcCCCceEEeeeccCCcchhHHHHHhhccCCCCCcccccccccceEEEECCCCCEEEEeCCCCCHHHHHHHHHH
Confidence              11111                     1          3     2335886666 999999999988 78888777665


Q ss_pred             H
Q 032502          130 A  130 (139)
Q Consensus       130 ~  130 (139)
                      +
T Consensus       182 l  182 (183)
T 2obi_A          182 Y  182 (183)
T ss_dssp             G
T ss_pred             h
Confidence            4

>2i81_A 2-Cys peroxiredoxin; structural genomics consortium, SGC, oxidoreductase; 2.45A {Plasmodium vivax sai-1} PDB: 2h66_A

Probab=99.60  E-value=1.8e-15  Score=101.22  Aligned_cols=111  Identities=14%  Similarity=0.215  Sum_probs=86.0

Q ss_pred             cCCCceEEeechhH--HH--HHHHHHhh-CCCEEEEEEe-CCCChhhhhhhHhHHHHHHhC--CCcEEEEEeCCc-----
Q 032502           21 FAGGNVSLVTTKDI--WD--QKMSEASK-EGKIVIANFS-ATWCGPCRMIAPFFSELSEKY--PSLMFLLVDVDE-----   87 (139)
Q Consensus        21 ~~~~~~~~i~~~~~--~~--~~~~~~~~-~~k~vlv~f~-~~~C~~C~~~~~~l~~~~~~~--~~v~~~~vd~~~-----   87 (139)
                      ..|..+|++...+.  ..  +.+.+... ++|++||+|| ++||+.|....+.|.+++++|  .++.++.|+.|.     
T Consensus        22 ~~G~~aP~f~l~~~~~~G~~~~v~l~d~~~gk~vvl~F~pa~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Is~D~~~~~~  101 (213)
T 2i81_A           22 YVGKEAPFFKAEAVFGDNSFGEVNLTQFIGKKYVLLYFYPLDFTFVCPSEIIALDKALDAFHERNVELLGCSVDSKYTHL  101 (213)
T ss_dssp             CBTSBCCCCEEEEECTTSCEEEEEGGGGTTTCEEEEEECSCTTSSHHHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHH
T ss_pred             cCCCcCCCeEeeccccCCceeEEeHHHHcCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHH
Confidence            44556666554433  22  34555666 8999999999 999999999999999999988  469999998764     


Q ss_pred             -----------------------chhhhhhCCCc-----ceeEEEEE-eCCeEEEEEeCC-----ChHHHHHHHHHHh
Q 032502           88 -----------------------LVEFSTSWDIK-----ATPTFFFL-KDGQQVDKLVGA-----NKPELQKKVAAAV  131 (139)
Q Consensus        88 -----------------------~~~~~~~~~v~-----~~Pt~~~~-~~g~~~~~~~g~-----~~~~l~~~i~~~~  131 (139)
                                             ...+++.|++.     .+|+++++ ++|+++....|.     +.+++.+.|+++.
T Consensus       102 ~~~~~~~~~~g~~~~~fp~l~D~~~~~~~~ygv~~~~g~~~p~~~lID~~G~i~~~~~~~~~~~~~~~ell~~l~~l~  179 (213)
T 2i81_A          102 AWKKTPLAKGGIGNIKHTLLSDITKSISKDYNVLFDDSVSLRAFVLIDMNGIVQHLLVNNLAIGRSVDEILRIIDAIQ  179 (213)
T ss_dssp             HHHSSCGGGTCCCSCSSEEEECTTSHHHHHTTCEETTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHhhCCccCCCceEEECCchHHHHHhCCccccCCcccEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHHH
Confidence                                   23467789998     89987777 899999987664     4788888888876

>2h01_A 2-Cys peroxiredoxin; thioredoxin peroxidase, structural genomics, SGC, structural genomics consortium, oxidoreductase; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10

Probab=99.60  E-value=1.1e-15  Score=100.56  Aligned_cols=93  Identities=19%  Similarity=0.232  Sum_probs=76.8

Q ss_pred             HHHHhh-CCCEEEEEEe-CCCChhhhhhhHhHHHHHHhC--CCcEEEEEeCCc---------------------------
Q 032502           39 MSEASK-EGKIVIANFS-ATWCGPCRMIAPFFSELSEKY--PSLMFLLVDVDE---------------------------   87 (139)
Q Consensus        39 ~~~~~~-~~k~vlv~f~-~~~C~~C~~~~~~l~~~~~~~--~~v~~~~vd~~~---------------------------   87 (139)
                      +.+... ++|++||+|| ++||+.|....+.|.++++++  .++.++.|+.|.                           
T Consensus        23 ~~l~~~~~gk~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~l~D  102 (192)
T 2h01_A           23 VSLSDFIGKKYVLLYFYPLDFTFVCPSEIIALDKALDSFKERNVELLGCSVDSKFTHLAWKKTPLSQGGIGNIKHTLISD  102 (192)
T ss_dssp             EEGGGGTTTCEEEEEECSCSSCSSCCHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSEEEEC
T ss_pred             EeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEeCCHHHHHHHHHhHHhhCCccCCCcCeEEC
Confidence            444445 7899999999 999999999999999999888  469999998863                           


Q ss_pred             -chhhhhhCCCc-----ceeEEEEE-eCCeEEEEEeCC-----ChHHHHHHHHHHh
Q 032502           88 -LVEFSTSWDIK-----ATPTFFFL-KDGQQVDKLVGA-----NKPELQKKVAAAV  131 (139)
Q Consensus        88 -~~~~~~~~~v~-----~~Pt~~~~-~~g~~~~~~~g~-----~~~~l~~~i~~~~  131 (139)
                       ...+.+.|++.     .+|+++++ ++|+++....|.     +.+++.+.|+++.
T Consensus       103 ~~~~~~~~~gv~~~~g~~~P~~~liD~~G~i~~~~~g~~~~~~~~~~l~~~l~~l~  158 (192)
T 2h01_A          103 ISKSIARSYDVLFNESVALRAFVLIDKQGVVQHLLVNNLALGRSVDEILRLIDALQ  158 (192)
T ss_dssp             TTSHHHHHTTCEETTTEECCEEEEECTTSBEEEEEEGGGSSGGGHHHHHHHHHHHH
T ss_pred             CcHHHHHHhCCcCcCCceeeEEEEEcCCCEEEEEEeCCCCCCCCHHHHHHHHHHHh
Confidence             23567889998     89998888 899999998774     3677888887765

>2b7k_A SCO1 protein; metallochaperone, cytochrome C oxidase, metal binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 PDB: 2b7j_A

Probab=99.60  E-value=1.7e-15  Score=100.36  Aligned_cols=111  Identities=21%  Similarity=0.309  Sum_probs=79.1

Q ss_pred             EEeechhHHHHHHHHHhhCCCEEEEEEeCCCChh-hhhhhHhHHHHHHhCC-----CcEEEEEeCCc-------------
Q 032502           27 SLVTTKDIWDQKMSEASKEGKIVIANFSATWCGP-CRMIAPFFSELSEKYP-----SLMFLLVDVDE-------------   87 (139)
Q Consensus        27 ~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~-C~~~~~~l~~~~~~~~-----~v~~~~vd~~~-------------   87 (139)
                      +++...+...+.+.+....+|++||+||++||+. |....+.|.++++++.     ++.++.|+.|.             
T Consensus        22 p~f~l~d~~G~~v~l~~~~Gk~vlv~F~at~C~~vC~~~~~~l~~l~~~~~~~~~~~v~vv~Is~D~~~d~~~~~~~~~~  101 (200)
T 2b7k_A           22 GPFHLEDMYGNEFTEKNLLGKFSIIYFGFSNCPDICPDELDKLGLWLNTLSSKYGITLQPLFITCDPARDSPAVLKEYLS  101 (200)
T ss_dssp             CCCEEEETTSCEEEGGGGTTSCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHCCCCEEEEEESCTTTCCHHHHHHHHT
T ss_pred             CCEEEEcCCCCEEeHHHcCCCEEEEEEECCCCcchhHHHHHHHHHHHHHHHHhhCCceEEEEEECCCCCCCHHHHHHHHH
Confidence            4444333334445555667999999999999997 9999999999766653     68888888763             


Q ss_pred             ---------------chhhhhhCCCc-cee---------------E-EEEEeCCeEEEEEeCC-ChHHHHHHHHHHhhcc
Q 032502           88 ---------------LVEFSTSWDIK-ATP---------------T-FFFLKDGQQVDKLVGA-NKPELQKKVAAAVDSV  134 (139)
Q Consensus        88 ---------------~~~~~~~~~v~-~~P---------------t-~~~~~~g~~~~~~~g~-~~~~l~~~i~~~~~~~  134 (139)
                                     ...+++.||+. ..|               + +++.++|+++..+.|. +.+.+.+.|.++++..
T Consensus       102 ~~~~~~~~l~~~~d~~~~~~~~~gv~~~~p~~~~~~~~~~~~~~~~~~liD~~G~i~~~~~g~~~~~~~~~~i~~~l~~l  181 (200)
T 2b7k_A          102 DFHPSILGLTGTFDEVKNACKKYRVYFSTPPNVKPGQDYLVDHSIFFYLMDPEGQFVDALGRNYDEKTGVDKIVEHVKSY  181 (200)
T ss_dssp             TSCTTCEEEECCHHHHHHHHHHTTC--------------CTTTCCCEEEECTTSCEEEEECTTCCTTHHHHHHHHHHHHC
T ss_pred             HcCCCceEEeCCHHHHHHHHHHcCcEEeeccccCCCCCceeeecceEEEECCCCcEEEEeCCCCCHHHHHHHHHHHHHHh
Confidence                           12356778886 444               4 4555999999999886 7778888888887765


Q ss_pred             CCC
Q 032502          135 VPS  137 (139)
Q Consensus       135 ~~~  137 (139)
                      .+.
T Consensus       182 ~~~  184 (200)
T 2b7k_A          182 VPA  184 (200)
T ss_dssp             CCC
T ss_pred             hhh
Confidence            543

>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}

Probab=99.60  E-value=6.7e-15  Score=100.32  Aligned_cols=100  Identities=14%  Similarity=0.189  Sum_probs=82.8

Q ss_pred             EeechhHHHHHHHHHhhCCCEEEEEEeCCC--ChhhhhhhHhHHHHHHhCCC------cEEEEEeCCcchhhhhhCCCcc
Q 032502           28 LVTTKDIWDQKMSEASKEGKIVIANFSATW--CGPCRMIAPFFSELSEKYPS------LMFLLVDVDELVEFSTSWDIKA   99 (139)
Q Consensus        28 ~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~--C~~C~~~~~~l~~~~~~~~~------v~~~~vd~~~~~~~~~~~~v~~   99 (139)
                      +....+++...+.   .-+++++|.||++|  |++|+.+.+.++++++.++.      +.|+.+|.+++++++++|||.+
T Consensus        10 ~~~~~~ql~~~~~---~~~~pv~v~~~~~~~~c~~c~~~~~~l~ela~~~~~~~~~~~v~~~~vd~d~~~~~~~~~gv~~   86 (243)
T 2hls_A           10 SEDFRRELRETLA---EMVNPVEVHVFLSKSGCETCEDTLRLMKLFEEESPTRNGGKLLKLNVYYRESDSDKFSEFKVER   86 (243)
T ss_dssp             CHHHHHHHHHHHT---TCCSCEEEEEEECSSSCTTHHHHHHHHHHHHHHSCEETTEESEEEEEEETTTTHHHHHHTTCCS
T ss_pred             CHHHHHHHHHHHH---hCCCCEEEEEEeCCCCCCchHHHHHHHHHHHHhccCCCCCceeEEEEecCCcCHHHHHhcCCCc
Confidence            3445555655553   33579999999999  99999999999999998765      9999999999999999999999


Q ss_pred             eeEEEEEeCCeEEEEEeCC-ChHHHHHHHHHHhhc
Q 032502          100 TPTFFFLKDGQQVDKLVGA-NKPELQKKVAAAVDS  133 (139)
Q Consensus       100 ~Pt~~~~~~g~~~~~~~g~-~~~~l~~~i~~~~~~  133 (139)
                      +||++++ +|  ..++.|. ....+..++..++..
T Consensus        87 ~Pt~~i~-~g--~~~~~G~~~~~~l~~fv~~~l~~  118 (243)
T 2hls_A           87 VPTVAFL-GG--EVRWTGIPAGEEIRALVEVIMRL  118 (243)
T ss_dssp             SSEEEET-TT--TEEEESCCCTTHHHHHHHHHHHH
T ss_pred             CCEEEEE-CC--ceeEcCCCcHHHHHHHHHHHHhc
Confidence            9999999 66  5667787 778888888887653

>1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A

Probab=99.59  E-value=1.6e-15  Score=97.88  Aligned_cols=112  Identities=19%  Similarity=0.290  Sum_probs=81.9

Q ss_pred             cCCCceEEeechhHHHHHHHHHhhCCCEEEEEEeCCCCh-hhhhhhHhHHHHHHhCC----CcEEEEEeCCc---ch---
Q 032502           21 FAGGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCG-PCRMIAPFFSELSEKYP----SLMFLLVDVDE---LV---   89 (139)
Q Consensus        21 ~~~~~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~-~C~~~~~~l~~~~~~~~----~v~~~~vd~~~---~~---   89 (139)
                      ..|..+|++...+...+.+.+...++|++||+||++||+ .|....+.|.++++++.    ++.++.|+.|.   .+   
T Consensus         8 ~~g~~~p~f~l~~~~G~~~~l~~~~gk~vll~f~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~d~~~~~   87 (174)
T 1xzo_A            8 PLNYEVEPFTFQNQDGKNVSLESLKGEVWLADFIFTNCETICPPMTAHMTDLQKKLKAENIDVRIISFSVDPENDKPKQL   87 (174)
T ss_dssp             CCCEECCCCEEECTTSCEEETGGGTTCCEEEEEECSCCSSCCCSHHHHHHHHHHHHHHTTCCCEEEEEESCTTTCCHHHH
T ss_pred             ccccccCCcEEEcCCCCEEehhhcCCCEEEEEEEcCCCcchhHHHHHHHHHHHHHhhhcCCcEEEEEEEeCCCCCCHHHH
Confidence            345555555544444445666667899999999999999 99999999999988775    39999998862   11   


Q ss_pred             -hh---------------------hhh----------------CCCcceeEEEEE-eCCeEEEEEeCC---ChHHHHHHH
Q 032502           90 -EF---------------------STS----------------WDIKATPTFFFL-KDGQQVDKLVGA---NKPELQKKV  127 (139)
Q Consensus        90 -~~---------------------~~~----------------~~v~~~Pt~~~~-~~g~~~~~~~g~---~~~~l~~~i  127 (139)
                       .+                     .+.                |++..+|+++++ ++|+++.++.|.   +.++|.+.|
T Consensus        88 ~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lid~~G~i~~~~~g~~~~~~~~l~~~l  167 (174)
T 1xzo_A           88 KKFAANYPLSFDNWDFLTGYSQSEIEEFALKSFKAIVKKPEGEDQVIHQSSFYLVGPDGKVLKDYNGVENTPYDDIISDV  167 (174)
T ss_dssp             HHHHTTSCCCGGGEEEEBCSCHHHHHHHHHHHHCCCCCCCSSCCSCCSCCEEEEECTTSEEEEEEESSSSCCHHHHHHHH
T ss_pred             HHHHHHcCCCCcceEEEeCCCHHHHHHHHHhhcCeeEeecCCCCeeeeeeEEEEECCCCeEEEEEcCCCCCCHHHHHHHH
Confidence             11                     111                345668876665 999999999887   378899999


Q ss_pred             HHHhh
Q 032502          128 AAAVD  132 (139)
Q Consensus       128 ~~~~~  132 (139)
                      +++++
T Consensus       168 ~~ll~  172 (174)
T 1xzo_A          168 KSAST  172 (174)
T ss_dssp             HHHTC
T ss_pred             HHHHh
Confidence            98875

>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A

Probab=99.59  E-value=1.4e-15  Score=97.36  Aligned_cols=98  Identities=13%  Similarity=0.095  Sum_probs=75.2

Q ss_pred             cCCCceEEee--chhHHHHHHHHHhhCCCEEEEEEeC-CCChhhhhhhHhHHHHHHhCC--CcEEEEEeCCc--------
Q 032502           21 FAGGNVSLVT--TKDIWDQKMSEASKEGKIVIANFSA-TWCGPCRMIAPFFSELSEKYP--SLMFLLVDVDE--------   87 (139)
Q Consensus        21 ~~~~~~~~i~--~~~~~~~~~~~~~~~~k~vlv~f~~-~~C~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~--------   87 (139)
                      ..|..+|++.  ..+...+.+.+....+|++||+||+ +||+.|....+.|.++++++.  ++.++.|..|.        
T Consensus         8 ~~G~~~P~f~~~l~~~~G~~~~l~~~~gk~~vl~F~~~~~c~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~   87 (163)
T 3gkn_A            8 VLELPAATFDLPLSLSGGTQTTLRAHAGHWLVIYFYPKDSTPGATTEGLDFNALLPEFDKAGAKILGVSRDSVKSHDNFC   87 (163)
T ss_dssp             CCCCCGGGGGCCEECSTTCEECSGGGTTSCEEEEECSCTTSHHHHHHHHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHH
T ss_pred             ccCCcCCCccccccCCCCCEEEHHHhCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHH
Confidence            4455555555  4443344555666678999999997 999999999999999998885  58899988873        


Q ss_pred             -------------chhhhhhCCCcc------------eeEEEEE-eCCeEEEEEeCC
Q 032502           88 -------------LVEFSTSWDIKA------------TPTFFFL-KDGQQVDKLVGA  118 (139)
Q Consensus        88 -------------~~~~~~~~~v~~------------~Pt~~~~-~~g~~~~~~~g~  118 (139)
                                   ...+.+.|++..            +|+++++ ++|+++..+.+.
T Consensus        88 ~~~~~~~~~~~d~~~~~~~~~~v~~~~~~~~~~~~~~~p~~~lid~~G~i~~~~~~~  144 (163)
T 3gkn_A           88 AKQGFAFPLVSDGDEALCRAFDVIKEKNMYGKQVLGIERSTFLLSPEGQVVQAWRKV  144 (163)
T ss_dssp             HHHCCSSCEEECTTCHHHHHTTCEEEEEETTEEEEEECCEEEEECTTSCEEEEECSC
T ss_pred             HHhCCCceEEECCcHHHHHHhCCccccccccccccCcceEEEEECCCCeEEEEEcCC
Confidence                         234567888876            8988777 899999988665

>1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer, peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP: c.47.1.10

Probab=99.58  E-value=3.3e-15  Score=100.39  Aligned_cols=113  Identities=16%  Similarity=0.125  Sum_probs=86.8

Q ss_pred             ccCCCceEEeechh---HHHHHHHHHhhCCCEEEEEEe-CCCChhhhhhhHhHHHHHHhC--CCcEEEEEeCCc------
Q 032502           20 EFAGGNVSLVTTKD---IWDQKMSEASKEGKIVIANFS-ATWCGPCRMIAPFFSELSEKY--PSLMFLLVDVDE------   87 (139)
Q Consensus        20 ~~~~~~~~~i~~~~---~~~~~~~~~~~~~k~vlv~f~-~~~C~~C~~~~~~l~~~~~~~--~~v~~~~vd~~~------   87 (139)
                      ...|..+|++....   .....+.+....+|++||+|| +.||+.|+...+.|.++++++  .++.++.|+.|.      
T Consensus        27 l~~G~~aP~f~l~~~~~~~g~~v~l~d~~Gk~vll~F~pa~~Cp~C~~~~~~l~~l~~~~~~~~v~vv~Is~D~~~~~~~  106 (220)
T 1zye_A           27 PAVTQHAPYFKGTAVVSGEFKEISLDDFKGKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDVNCEVVAVSVDSHFSHLA  106 (220)
T ss_dssp             CCTTSBCCCCEEEEECSSSEEEEEGGGGTTSEEEEEECSCTTCSSSHHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHH
T ss_pred             ccCCCCCCCcEEEeeeCCCCcEEEHHHhCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHH
Confidence            34556666655421   112234455567899999999 999999999999999999988  479999998863      


Q ss_pred             ----------------------chhhhhhCCCc------ceeEEEEE-eCCeEEEEEeCC-----ChHHHHHHHHHHhh
Q 032502           88 ----------------------LVEFSTSWDIK------ATPTFFFL-KDGQQVDKLVGA-----NKPELQKKVAAAVD  132 (139)
Q Consensus        88 ----------------------~~~~~~~~~v~------~~Pt~~~~-~~g~~~~~~~g~-----~~~~l~~~i~~~~~  132 (139)
                                            ...+.+.|++.      .+|+++++ ++|+++.+..|.     +.+++.+.|+++..
T Consensus       107 ~~~~~~~~~g~~~~~fp~l~D~~~~i~~~ygv~~~~~g~~~P~~~liD~~G~I~~~~~g~~~~~~~~~ell~~l~~l~~  185 (220)
T 1zye_A          107 WINTPRKNGGLGHMNIALLSDLTKQISRDYGVLLEGPGLALRGLFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQF  185 (220)
T ss_dssp             HHTSCGGGTCCCSCSSEEEECTTSHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCcCCceEEEECCcHHHHHHhCCeecCCCcccceEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHhhh
Confidence                                  23567889998      99998888 899999987664     45788888888764

>3me7_A Putative uncharacterized protein; electron transfer protein, electron transport, structural GE PSI-2, protein structure initiative; 1.50A {Aquifex aeolicus} PDB: 3me8_A

Probab=99.55  E-value=8.6e-15  Score=94.64  Aligned_cols=115  Identities=19%  Similarity=0.215  Sum_probs=82.4

Q ss_pred             CCceE-EeechhHHHHHHHHHhhCCCEEEEEEeCCCCh-hhhhhhHhHHHHHHhCC----CcEEEEEeCCc---------
Q 032502           23 GGNVS-LVTTKDIWDQKMSEASKEGKIVIANFSATWCG-PCRMIAPFFSELSEKYP----SLMFLLVDVDE---------   87 (139)
Q Consensus        23 ~~~~~-~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~-~C~~~~~~l~~~~~~~~----~v~~~~vd~~~---------   87 (139)
                      |..+| ++...+...+.+.+....+|++||+||++||+ .|....+.|.++++++.    ++.++.|.+|.         
T Consensus         4 G~~~P~~f~l~d~~G~~v~l~~~~Gk~vll~F~~t~C~~~C~~~~~~l~~~~~~~~~~~~~~~vv~is~d~~d~~~~~~~   83 (170)
T 3me7_A            4 GTYVPGDITLVDSYGNEFQLKNLKGKPIILSPIYTHCRAACPLITKSLLKVIPKLGTPGKDFWVITFTFDPKDTLEDIKR   83 (170)
T ss_dssp             TCBCCTTCEEEETTCCEEEGGGGTTSCEEEEEECTTCCSHHHHHHHHHHTTHHHHCCBTTTBEEEEEECCTTCCHHHHHH
T ss_pred             CCcCCCCeEEEcCCcCEEchHHhCCCEEEEEEECCCCCchhHHHHHHHHHHHHHhhhcCCceEEEEEECCCCCCHHHHHH
Confidence            44445 44433333444556666799999999999997 69999999999998883    48888887651         


Q ss_pred             ----------------------chhhhhhCCC---------cceeEEEEE-eCCeEEEEEeCC--ChHHHHHHHHHHhhc
Q 032502           88 ----------------------LVEFSTSWDI---------KATPTFFFL-KDGQQVDKLVGA--NKPELQKKVAAAVDS  133 (139)
Q Consensus        88 ----------------------~~~~~~~~~v---------~~~Pt~~~~-~~g~~~~~~~g~--~~~~l~~~i~~~~~~  133 (139)
                                            ...+++.||+         ...|+++++ ++|+++..+.|.  +.+++.+.|.+++..
T Consensus        84 ~~~~~~~~~~~w~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~lID~~G~i~~~~~g~~~~~~~i~~~l~~~~~~  163 (170)
T 3me7_A           84 FQKEYGIDGKGWKVVKAKTSEDLFKLLDAIDFRFMTAGNDFIHPNVVVVLSPELQIKDYIYGVNYNYLEFVNALRLARGE  163 (170)
T ss_dssp             HHHHTTCCSSSEEEEEESSHHHHHHHHHHTTCCCEEETTEEECCCEEEEECTTSBEEEEEESSSCCHHHHHHHHHHHTTC
T ss_pred             HHHHcCCCCCCeEEEeCCCHHHHHHHHHHCCeEEecCCCccccCceEEEECCCCeEEEEEeCCCCCHHHHHHHHHHhhcc
Confidence                                  0123444453         345655555 999999988887  789999999998776


Q ss_pred             cCCC
Q 032502          134 VVPS  137 (139)
Q Consensus       134 ~~~~  137 (139)
                      ..+.
T Consensus       164 ~~~~  167 (170)
T 3me7_A          164 GHHH  167 (170)
T ss_dssp             SCTT
T ss_pred             cccc
Confidence            6543

>2e7p_A Glutaredoxin; thioredoxin fold, poplar, electron transport; HET: GSH; 2.10A {Populus tremula x populus tremuloides} PDB: 1z7p_A 1z7r_A

Probab=99.55  E-value=3e-15  Score=90.82  Aligned_cols=80  Identities=18%  Similarity=0.287  Sum_probs=59.1

Q ss_pred             CCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcc-----hhhhhhCCCcceeEEEEEeCCeEEEEEeCC-
Q 032502           45 EGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDEL-----VEFSTSWDIKATPTFFFLKDGQQVDKLVGA-  118 (139)
Q Consensus        45 ~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~-----~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-  118 (139)
                      +++++++ ||++||++|+.+.+.|.++...   +.++.+|.+..     ..+.+.|++.++|++  |.+|+.+..+.|. 
T Consensus        18 ~~~~vv~-f~a~~C~~C~~~~~~l~~~~~~---~~~v~v~~~~~~~~~~~~l~~~~~v~~~Pt~--~~~g~~v~~~~~~~   91 (116)
T 2e7p_A           18 SSAPVVV-FSKTYCGYCNRVKQLLTQVGAS---YKVVELDELSDGSQLQSALAHWTGRGTVPNV--FIGGKQIGGCDTVV   91 (116)
T ss_dssp             TSSSEEE-EECTTCHHHHHHHHHHHHHTCC---CEEEEGGGSTTHHHHHHHHHHHHSCCSSCEE--EETTEEEECHHHHH
T ss_pred             cCCCEEE-EECCCChhHHHHHHHHHHcCCC---eEEEEccCCCChHHHHHHHHHHhCCCCcCEE--EECCEEECChHHHH
Confidence            3456666 9999999999999999888543   45555555554     468899999999999  4589887765544 


Q ss_pred             ---ChHHHHHHHHHH
Q 032502          119 ---NKPELQKKVAAA  130 (139)
Q Consensus       119 ---~~~~l~~~i~~~  130 (139)
                         +.++|.++|.++
T Consensus        92 ~~~~~~~l~~~l~~~  106 (116)
T 2e7p_A           92 EKHQRNELLPLLQDA  106 (116)
T ss_dssp             HHHHTTCHHHHHHHT
T ss_pred             HHHhCChHHHHHHHc
Confidence               445677777664

>3ztl_A Thioredoxin peroxidase; oxidoreductase, reductase, schistosomiasis, thioredoxin fold; 3.00A {Schistosoma mansoni} PDB: 3zvj_A 3zvj_D

Probab=99.55  E-value=9.8e-15  Score=98.22  Aligned_cols=112  Identities=15%  Similarity=0.158  Sum_probs=83.9

Q ss_pred             cccCCCceEEeech---hHHHHHHHHHhhCCCEEEEEEeC-CCChhhhhhhHhHHHHHHhCC--CcEEEEEeCCcc----
Q 032502           19 VEFAGGNVSLVTTK---DIWDQKMSEASKEGKIVIANFSA-TWCGPCRMIAPFFSELSEKYP--SLMFLLVDVDEL----   88 (139)
Q Consensus        19 ~~~~~~~~~~i~~~---~~~~~~~~~~~~~~k~vlv~f~~-~~C~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~~----   88 (139)
                      ....|..+|++...   +.-.+.+.+...++|++||+||+ +||+.|....+.|.+++++|.  ++.++.|+.|..    
T Consensus        39 ~l~~G~~aP~f~l~~~~d~~G~~v~l~~~~Gk~vll~F~a~~wC~~C~~~~p~l~~l~~~~~~~~v~vv~Is~D~~~~~~  118 (222)
T 3ztl_A           39 VLLPNRPAPEFKGQAVINGEFKEICLKDYRGKYVVLFFYPADFTFVCPTEIIAFSDQVEEFNSRNCQVIACSTDSQYSHL  118 (222)
T ss_dssp             -CCSSEECCCCEEEEEETTEEEEEEGGGGTTSEEEEEECSCSSCSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHH
T ss_pred             cccCCCCCCCeEEecccCCCCcEEeHHHhCCCeEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHH
Confidence            34566677777654   22224456666789999999996 999999999999999999985  599999988742    


Q ss_pred             ------------------------hhhhhhCCCc------ceeEEEEE-eCCeEEEEEeCC-----ChHHHHHHHHHH
Q 032502           89 ------------------------VEFSTSWDIK------ATPTFFFL-KDGQQVDKLVGA-----NKPELQKKVAAA  130 (139)
Q Consensus        89 ------------------------~~~~~~~~v~------~~Pt~~~~-~~g~~~~~~~g~-----~~~~l~~~i~~~  130 (139)
                                              ..+.+.|++.      .+|+++++ ++|+++..+.|.     ..+++.+.|.++
T Consensus       119 ~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~I~~~~~g~~~~~~~~~~il~~l~~l  196 (222)
T 3ztl_A          119 AWDNLDRKSGGLGHMKIPLLADRKQEISKAYGVFDEEDGNAFRGLFIIDPNGILRQITINDKPVGRSVDETLRLLDAF  196 (222)
T ss_dssp             HHHHSCGGGTSCCSCSSCEEECSSSHHHHHTTCBCTTTSSBCEEEEEECTTSEEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred             HHHHHhhhhccccccceeEEeCCchHHHHHcCCeecCCCCccceEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence                                    2456789998      89988888 899999998765     245555555543

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=99.55  E-value=8.3e-14  Score=104.15  Aligned_cols=82  Identities=16%  Similarity=0.341  Sum_probs=74.1

Q ss_pred             CCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhhhhhCCCcceeEEEEEeCCeEEEEEeCC-ChHHH
Q 032502           45 EGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGA-NKPEL  123 (139)
Q Consensus        45 ~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~l  123 (139)
                      .++..++.||++||++|+.+.|.+++++..++++.+..+|.+++++++.+|+|+++|++++  ||+.+..  |. +.++|
T Consensus       116 ~~~~~i~~f~a~~C~~C~~~~~~l~~~a~~~~~v~~~~vd~~~~~~~~~~~~i~svPt~~i--~g~~~~~--G~~~~~~l  191 (521)
T 1hyu_A          116 DGDFEFETYYSLSCHNCPDVVQALNLMAVLNPRIKHTAIDGGTFQNEITERNVMGVPAVFV--NGKEFGQ--GRMTLTEI  191 (521)
T ss_dssp             CSCEEEEEEECTTCSSHHHHHHHHHHHHHHCTTEEEEEEETTTCHHHHHHTTCCSSSEEEE--TTEEEEE--SCCCHHHH
T ss_pred             CCCcceEEEECCCCcCcHHHHHHHHHHHhHcCceEEEEEechhhHHHHHHhCCCccCEEEE--CCEEEec--CCCCHHHH
Confidence            3567899999999999999999999999999999999999999999999999999999988  9998765  77 88888


Q ss_pred             HHHHHHH
Q 032502          124 QKKVAAA  130 (139)
Q Consensus       124 ~~~i~~~  130 (139)
                      .+++...
T Consensus       192 ~~~l~~~  198 (521)
T 1hyu_A          192 VAKVDTG  198 (521)
T ss_dssp             HHHHCCS
T ss_pred             HHHHhhc
Confidence            8887654

>4g2e_A Peroxiredoxin; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 1.40A {Sulfolobus tokodaii} PDB: 2ywn_A 3hjp_A

Probab=99.54  E-value=2e-15  Score=96.51  Aligned_cols=110  Identities=22%  Similarity=0.271  Sum_probs=74.1

Q ss_pred             cCCCceEEeechhHHHHHHHHHhhCCCEEEEEEe-CCCChhhhhhhHhHHHHHHhCC--CcEEEEEeCCcc---------
Q 032502           21 FAGGNVSLVTTKDIWDQKMSEASKEGKIVIANFS-ATWCGPCRMIAPFFSELSEKYP--SLMFLLVDVDEL---------   88 (139)
Q Consensus        21 ~~~~~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~-~~~C~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~~---------   88 (139)
                      ..|..+|++...+...+.+.++..++|++||.|| +.||+.|....+.|.++++++.  ++.++.|+.|..         
T Consensus         5 ~vG~~aPdF~l~~~~G~~~~l~d~~Gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~~~~~~v~vs~d~~~~~~~~~~~   84 (157)
T 4g2e_A            5 EIGELAPDFELPDTELKKVKLSALKGKVVVLAFYPAAFTQVCTKEMCTFRDSMAKFNQVNAVVLGISVDPPFSNKAFKEH   84 (157)
T ss_dssp             CTTSBCCCCEEEBTTSCEEEGGGGTTSCEEEEECSCTTCCC------CCSCGGGGGGGCSSEEEEEESSCHHHHHHHHHH
T ss_pred             CCCCCCcCeEeECCCCCEEeHHHHCCCeEEEEecCCCCCCccccchhhcccccccccccCceEeeecccchhHHHHHHHH
Confidence            3456666666555555566777788999999999 9999999999999998888875  588888887642         


Q ss_pred             ------------hhhhhhCCCc-----------ceeEEEEE-eCCeEEEEEeCC------ChHHHHHHHHHH
Q 032502           89 ------------VEFSTSWDIK-----------ATPTFFFL-KDGQQVDKLVGA------NKPELQKKVAAA  130 (139)
Q Consensus        89 ------------~~~~~~~~v~-----------~~Pt~~~~-~~g~~~~~~~g~------~~~~l~~~i~~~  130 (139)
                                  ..+++.||+.           ..|+++++ ++|+++..+.+.      +.+++.+.|+++
T Consensus        85 ~~~~~p~l~D~~~~v~~~ygv~~~~~~~~~~~~~~p~tflID~~G~I~~~~~~~~~~~~~~~~eil~~l~~L  156 (157)
T 4g2e_A           85 NKLNFTILSDYNREVVKKYNVAWEFPALPGYVLAKRAVFVIDKEGKVRYKWVSDDPTKEPPYDEIEKVVKSL  156 (157)
T ss_dssp             TTCCSEEEECTTSHHHHHTTCEEECTTSTTCEEECEEEEEECTTSBEEEEEEESSTTCCCCHHHHHHHHHHT
T ss_pred             cCCcEEEEEcCCcHHHHHcCCccccccCCCcceeeeeEEEECCCCEEEEEEECCCCCCCCCHHHHHHHHHHh
Confidence                        3456678763           35665555 899999887543      345666666543

>2i3y_A Epididymal secretory glutathione peroxidase; thioredoxin fold, epididymal androgen related protein, struc genomics, structural genomics consortium; 2.00A {Homo sapiens}

Probab=99.54  E-value=1.4e-14  Score=97.03  Aligned_cols=110  Identities=16%  Similarity=0.180  Sum_probs=80.1

Q ss_pred             CceEEeechhHH-HHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCC--CcEEEEEeCCc-----------ch
Q 032502           24 GNVSLVTTKDIW-DQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP--SLMFLLVDVDE-----------LV   89 (139)
Q Consensus        24 ~~~~~i~~~~~~-~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~-----------~~   89 (139)
                      ..++++...+.. .+.+.++..++|++||+||++||+.|+ ..|.|++++++|.  ++.++.+.+++           ..
T Consensus        33 ~~~pdF~l~d~~~G~~v~Lsd~~GKvvll~FwAt~C~~c~-e~p~L~~l~~~~~~~g~~Vlgvs~d~f~~~e~~~~~~i~  111 (215)
T 2i3y_A           33 GTIYDYEAIALNKNEYVSFKQYVGKHILFVNVATYCGLTA-QYPELNALQEELKPYGLVVLGFPCNQFGKQEPGDNKEIL  111 (215)
T ss_dssp             CCGGGCEEEBSSSSCEEEGGGGTTSEEEEEEECSSSGGGG-GHHHHHHHHHHHGGGTEEEEEEECCCSTTCCCSCHHHHH
T ss_pred             CCcCCcEeeeCCCCCEEcHHHhCCCEEEEEEeCCCCCChH-hHHHHHHHHHHhccCCeEEEEEEccccCcCCCCCHHHHH
Confidence            344554444433 345667778899999999999999999 8999999999986  58888887642           12


Q ss_pred             hhhh------hCCCc--------------------------------c--------------e---eE-EEEEeCCeEEE
Q 032502           90 EFST------SWDIK--------------------------------A--------------T---PT-FFFLKDGQQVD  113 (139)
Q Consensus        90 ~~~~------~~~v~--------------------------------~--------------~---Pt-~~~~~~g~~~~  113 (139)
                      .+++      +|++.                                +              +   |+ +++.++|+++.
T Consensus       112 ~f~~~~~~~~~~~~~fpll~d~d~~g~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~p~~~~~i~~npttfLID~~G~vv~  191 (215)
T 2i3y_A          112 PGLKYVRPGGGFVPSFQLFEKGDVNGEKEQKVFSFLKHSCPHPSEILGTFKSISWDPVKVHDIRWNFEKFLVGPDGIPVM  191 (215)
T ss_dssp             HHHHHTSSCTTCCCSSEEBCCCCSSSTTCCHHHHHHHHHSCCSCSCCCCTTTCCSSSCCTTCCCSTTCEEEECTTSCEEE
T ss_pred             HHHHhccchhccCccceeEeeeccCCcccchHHHHHHhhCcccccccccccccccccccccccccCceEEEECCCCeEEE
Confidence            2344      44331                                0              1   45 55559999999


Q ss_pred             EEeCC-ChHHHHHHHHHHhhcc
Q 032502          114 KLVGA-NKPELQKKVAAAVDSV  134 (139)
Q Consensus       114 ~~~g~-~~~~l~~~i~~~~~~~  134 (139)
                      ++.|. +.++|.+.|+++++..
T Consensus       192 ~~~g~~~~~~l~~~I~~ll~~~  213 (215)
T 2i3y_A          192 RWSHRATVSSVKTDILAYLKQF  213 (215)
T ss_dssp             EECTTSCHHHHHHHHHHHGGGC
T ss_pred             EeCCCCCHHHHHHHHHHHHHHh
Confidence            99887 8899999999998653

>3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi}

Probab=99.54  E-value=6.4e-14  Score=90.70  Aligned_cols=85  Identities=19%  Similarity=0.351  Sum_probs=69.5

Q ss_pred             hCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCC-------------------------------------
Q 032502           44 KEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVD-------------------------------------   86 (139)
Q Consensus        44 ~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~-------------------------------------   86 (139)
                      ..++++|+.||.+|||+|+.+.+.+.++.++++++.++..+..                                     
T Consensus        20 ~~a~v~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~v~~~~~~~p~~~~~s~~aa~~~~~a~~~~~~~~~~~~lf~~~~~~~   99 (175)
T 3gyk_A           20 PEGDVTVVEFFDYNCPYCRRAMAEVQGLVDADPNVRLVYREWPILGEGSDFAARAALAARQQGKYEAFHWALMGMSGKAN   99 (175)
T ss_dssp             TTCSEEEEEEECTTCHHHHHHHHHHHHHHHHCTTEEEEEEECCCSCHHHHHHHHHHHHGGGGTCHHHHHHHHHTCSSCCS
T ss_pred             CCCCEEEEEEECCCCccHHHHHHHHHHHHHhCCCEEEEEEeCCCCCCChHHHHHHHHHHHHHhHHHHHHHHHHhcCCCCC
Confidence            3578999999999999999999999999999988777766532                                     


Q ss_pred             --------------------------------cchhhhhhCCCcceeEEEEEeCCeEEEEEeCC-ChHHHHHHHHHHhhc
Q 032502           87 --------------------------------ELVEFSTSWDIKATPTFFFLKDGQQVDKLVGA-NKPELQKKVAAAVDS  133 (139)
Q Consensus        87 --------------------------------~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~i~~~~~~  133 (139)
                                                      .+..++.++||.++||+++  +|+   .+.|. +.+.|.+.|+++++.
T Consensus       100 ~~~l~~~a~~~Gld~~~~~~~~~~~~~~~~v~~~~~~a~~~gv~gtPt~~i--~g~---~~~G~~~~~~l~~~i~~~l~~  174 (175)
T 3gyk_A          100 ETGVLRIAREVGLDTEQLQRDMEAPEVTAHIAQSMALAQKLGFNGTPSFVV--EDA---LVPGFVEQSQLQDAVDRARKA  174 (175)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHTTCHHHHHHHHHHHHHHHHHTCCSSSEEEE--TTE---EECSCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHhChHHHHHHHHHHHHHHHcCCccCCEEEE--CCE---EeeCCCCHHHHHHHHHHHHhc
Confidence                                            2234567889999999998  775   55688 899999999988754

>2k8s_A Thioredoxin; dimer, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Nitrosomonas europaea}

Probab=99.54  E-value=1.1e-14  Score=82.90  Aligned_cols=62  Identities=15%  Similarity=0.236  Sum_probs=49.5

Q ss_pred             EEEEeCCCChhhhhhhHhHHHHHHhCC-CcEEEEEeCC-cchhhhhhCCCcceeEEEEEeCCeEEE
Q 032502           50 IANFSATWCGPCRMIAPFFSELSEKYP-SLMFLLVDVD-ELVEFSTSWDIKATPTFFFLKDGQQVD  113 (139)
Q Consensus        50 lv~f~~~~C~~C~~~~~~l~~~~~~~~-~v~~~~vd~~-~~~~~~~~~~v~~~Pt~~~~~~g~~~~  113 (139)
                      ++.||++||++|+.+.+.++++.++++ .+.++.+|.+ ++.++.++||+.++|++++  +|+.+.
T Consensus         4 ~~~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~gv~~vPt~~i--~g~~~~   67 (80)
T 2k8s_A            4 KAIFYHAGCPVCVSAEQAVANAIDPSKYTVEIVHLGTDKARIAEAEKAGVKSVPALVI--DGAAFH   67 (80)
T ss_dssp             EEEEEECSCHHHHHHHHHHHHHSCTTTEEEEEEETTTCSSTHHHHHHHTCCEEEEEEE--TTEEEE
T ss_pred             eEEEeCCCCCchHHHHHHHHHHHHhcCCeEEEEEecCChhhHHHHHHcCCCcCCEEEE--CCEEEE
Confidence            677999999999999999999987763 2444444443 5678889999999999987  888664

>3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa}

Probab=99.54  E-value=1.4e-14  Score=94.40  Aligned_cols=110  Identities=11%  Similarity=0.036  Sum_probs=81.7

Q ss_pred             cCCCceEEeechhHHHHHHHHHhhCCCEEEEEEe-CCCChhhhhhhHhHHHHHHhCC--CcEEEEEeCCcc---------
Q 032502           21 FAGGNVSLVTTKDIWDQKMSEASKEGKIVIANFS-ATWCGPCRMIAPFFSELSEKYP--SLMFLLVDVDEL---------   88 (139)
Q Consensus        21 ~~~~~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~-~~~C~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~~---------   88 (139)
                      .++.++|++...+...+.+.+....+|++||+|| +.||+.|....+.|.++++++.  ++.++.|..|..         
T Consensus        26 ~ig~~aP~f~l~~~~G~~v~l~d~~Gk~vvl~f~~~~~c~~C~~el~~l~~l~~~~~~~~~~vv~Vs~D~~~~~~~~~~~  105 (179)
T 3ixr_A           26 TLNHSLLNHPLMLSGSTCKTLSDYTNQWLVLYFYPKDNTPGSSTEGLEFNLLLPQFEQINATVLGVSRDSVKSHDSFCAK  105 (179)
T ss_dssp             BCCHHHHHCCEEEGGGEEECGGGGTTSEEEEEECSCTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESCCHHHHHHHHHH
T ss_pred             ccCCcCCCeeEECCCCCEEeHHHHCCCCEEEEEEcCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHH
Confidence            3334478777666666667777788999999999 9999999999999999999885  488888888642         


Q ss_pred             ------------hhhhhhCCCcc------------eeEEEEE-eCCeEEEEEeCC-C---hHHHHHHHHHH
Q 032502           89 ------------VEFSTSWDIKA------------TPTFFFL-KDGQQVDKLVGA-N---KPELQKKVAAA  130 (139)
Q Consensus        89 ------------~~~~~~~~v~~------------~Pt~~~~-~~g~~~~~~~g~-~---~~~l~~~i~~~  130 (139)
                                  ..+++.|++..            .|+++++ ++|+++..+.+. .   .+++.+.|+++
T Consensus       106 ~~~~f~~l~D~~~~~~~~~gv~~~~~~~g~~~~~~~p~~~lID~~G~I~~~~~~~~~~~~~~~il~~l~~l  176 (179)
T 3ixr_A          106 QGFTFPLVSDSDAILCKAFDVIKEKTMYGRQVIGIERSTFLIGPTHRIVEAWRQVKVPGHAEEVLNKLKAH  176 (179)
T ss_dssp             HTCCSCEEECTTCHHHHHTTCEEEECCC--CEEEECCEEEEECTTSBEEEEECSCCSTTHHHHHHHHHHHH
T ss_pred             cCCceEEEECCchHHHHHcCCcccccccCcccCCcceEEEEECCCCEEEEEEcCCCCCCCHHHHHHHHHHH
Confidence                        34567788764            4766666 899999988665 3   34444444443

>2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10

Probab=99.53  E-value=1.6e-14  Score=92.23  Aligned_cols=109  Identities=17%  Similarity=0.150  Sum_probs=74.1

Q ss_pred             CCCceEEeechhHHHHHHHHHhhCCC--EEEEEEe-CCCChhhhhhhHhHHHHHHhCC--CcEEEEEeCCc---------
Q 032502           22 AGGNVSLVTTKDIWDQKMSEASKEGK--IVIANFS-ATWCGPCRMIAPFFSELSEKYP--SLMFLLVDVDE---------   87 (139)
Q Consensus        22 ~~~~~~~i~~~~~~~~~~~~~~~~~k--~vlv~f~-~~~C~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~---------   87 (139)
                      .|..+|++...+...+.+.+....++  ++||+|| +.||+.|....+.|.++++++.  + .++.|..|.         
T Consensus         9 ~G~~~P~f~l~~~~G~~v~l~~~~gk~~~vvl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~-~vv~is~d~~~~~~~~~~   87 (159)
T 2a4v_A            9 IGDPIPDLSLLNEDNDSISLKKITENNRVVVFFVYPRASTPGSTRQASGFRDNYQELKEYA-AVFGLSADSVTSQKKFQS   87 (159)
T ss_dssp             TTCBCCSCEEECTTSCEEEHHHHHHHCSEEEEEECSSSSSHHHHHHHHHHHHHHHHHTTTC-EEEEEESCCHHHHHHHHH
T ss_pred             CCCCCCCeEEECCCCCEEeHHHHhCCCCeEEEEEcCCCCCCCHHHHHHHHHHHHHHHHhCC-cEEEEeCCCHHHHHHHHH
Confidence            34444444433322233333333444  8899987 9999999999999999998875  5 777777753         


Q ss_pred             ------------chhhhhhCCCccee-------EEEEEeCCeEEEEEeCC-Ch---HHHHHHHHHHhh
Q 032502           88 ------------LVEFSTSWDIKATP-------TFFFLKDGQQVDKLVGA-NK---PELQKKVAAAVD  132 (139)
Q Consensus        88 ------------~~~~~~~~~v~~~P-------t~~~~~~g~~~~~~~g~-~~---~~l~~~i~~~~~  132 (139)
                                  +..+.+.|++...|       ++++ ++|+++..+.|. ..   +.+.+.|.++++
T Consensus        88 ~~~~~~~~l~D~~~~~~~~~gv~~~p~~g~~~~~~li-~~G~i~~~~~g~~~~~~~~~~~~~l~~~l~  154 (159)
T 2a4v_A           88 KQNLPYHLLSDPKREFIGLLGAKKTPLSGSIRSHFIF-VDGKLKFKRVKISPEVSVNDAKKEVLEVAE  154 (159)
T ss_dssp             HHTCSSEEEECTTCHHHHHHTCBSSSSSCBCCEEEEE-ETTEEEEEEESCCHHHHHHHHHHHHHHHHH
T ss_pred             HhCCCceEEECCccHHHHHhCCcccccCCccceEEEE-cCCEEEEEEccCCccccHHHHHHHHHHHHH
Confidence                        23467789999888       6777 999999999887 33   344444444444

>1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A

Probab=99.51  E-value=8.1e-14  Score=79.89  Aligned_cols=75  Identities=17%  Similarity=0.326  Sum_probs=61.9

Q ss_pred             EEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcch----hhhhhCC--CcceeEEEEEeCCeEEEEEeCCChHHH
Q 032502           50 IANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELV----EFSTSWD--IKATPTFFFLKDGQQVDKLVGANKPEL  123 (139)
Q Consensus        50 lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~----~~~~~~~--v~~~Pt~~~~~~g~~~~~~~g~~~~~l  123 (139)
                      ++.|+++||++|+.+.+.|+++..+++++.+..+|+++++    ++.++++  +.++|++++  +|+.+.   |  .++|
T Consensus         3 v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~vdi~~~~~~~~~l~~~~~~~~~~vP~i~~--~g~~i~---~--~~~l   75 (85)
T 1ego_A            3 TVIFGRSGCPYCVRAKDLAEKLSNERDDFQYQYVDIRAEGITKEDLQQKAGKPVETVPQIFV--DQQHIG---G--YTDF   75 (85)
T ss_dssp             EEEECCTTSTHHHHHHHHHHHHHHHHSSCEEEEECHHHHTCCSHHHHHHTCCCSCCSCEEEE--TTEEEE---S--SHHH
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHHhcCCCceEEEEecccChHHHHHHHHHhCCCCceeCeEEE--CCEEEE---C--HHHH
Confidence            6779999999999999999999988888999999998764    7888999  999999843  887654   3  3677


Q ss_pred             HHHHHHHh
Q 032502          124 QKKVAAAV  131 (139)
Q Consensus       124 ~~~i~~~~  131 (139)
                      .+++++.+
T Consensus        76 ~~~~~~~~   83 (85)
T 1ego_A           76 AAWVKENL   83 (85)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhc
Confidence            77776654

>3zrd_A Thiol peroxidase; oxidoreductase, 2Cys peroxiredoxin, thioredoxin-fold, ROS PR; 1.74A {Yersinia pseudotuberculosis} PDB: 2xpe_A 2xpd_A 3zre_A 2yjh_A 4af2_A 3hvs_A* 1qxh_A* 3i43_A* 3hvv_A 3hvx_A

Probab=99.50  E-value=4.2e-14  Score=93.76  Aligned_cols=110  Identities=15%  Similarity=0.170  Sum_probs=82.8

Q ss_pred             ccCCCceEEeechhHHHHHHHHHhhCCCEEEEEEe-CCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCc-----------
Q 032502           20 EFAGGNVSLVTTKDIWDQKMSEASKEGKIVIANFS-ATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDE-----------   87 (139)
Q Consensus        20 ~~~~~~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~-~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~-----------   87 (139)
                      ...|..+|++...+...+.+.++..++|++||+|| +.||+.|....+.|.++++++.++.++.|..|.           
T Consensus        52 l~~G~~aPdf~l~d~~G~~v~L~d~~Gk~vvl~F~~~~~c~~C~~e~~~l~~l~~~~~~v~vv~Is~D~~~~~~~~~~~~  131 (200)
T 3zrd_A           52 PQIGDKAKDFTLVAKDLSDVALSSFAGKRKVLNIFPSIDTGVCAASVRKFNQLAGELENTVVLCISSDLPFAQSRFCGAE  131 (200)
T ss_dssp             CCTTCBCCCCEEECTTSCEEEGGGGTTSEEEEEECSCCCCSCCCHHHHHHHHHHHTSTTEEEEEEESSCHHHHTTCTTTT
T ss_pred             CCCCCCCCCeEEECCCCCEEcHHHhCCCcEEEEEECCCCCchhHHHHHHHHHHHHHhCCCEEEEEECCCHHHHHHHHHHc
Confidence            45666777777666555667777788999999999 789999999999999999999779999888863           


Q ss_pred             ------------chhhhhhCCCc---------ceeEEEEE-eCCeEEEEEeCC---ChHHHHHHHHH
Q 032502           88 ------------LVEFSTSWDIK---------ATPTFFFL-KDGQQVDKLVGA---NKPELQKKVAA  129 (139)
Q Consensus        88 ------------~~~~~~~~~v~---------~~Pt~~~~-~~g~~~~~~~g~---~~~~l~~~i~~  129 (139)
                                  ...+.+.||+.         .+|+++++ ++|+++....+.   ...++.+.|+.
T Consensus       132 ~~~~f~~l~D~~~~~~~~~ygv~~~~~~~~g~~~p~~~lID~~G~I~~~~~~~~~~~~~~~~~~l~~  198 (200)
T 3zrd_A          132 GLSNVITLSTLRGADFKQAYGVAITEGPLAGLTARAVVVLDGQDNVIYSELVNEITTEPNYDAALAA  198 (200)
T ss_dssp             TCTTEEEEETTSCTHHHHHTTCEECSSTTTTSBCCEEEEECTTSBEEEEEECSBTTSCCCHHHHHHH
T ss_pred             CCCCceEEecCchHHHHHHhCceeecccCCCccccEEEEECCCCeEEEEEecCCcccCCCHHHHHHh
Confidence                        23455667765         25987777 899999987654   34445555543

>2yzh_A Probable thiol peroxidase; redox protein, antioxidant, oxidoreductase, STRU genomics, NPPSFA; 1.85A {Aquifex aeolicus}

Probab=99.50  E-value=4.6e-14  Score=91.09  Aligned_cols=110  Identities=13%  Similarity=0.106  Sum_probs=80.4

Q ss_pred             cCCCceEEeechhHHHHHHHHHhhCCCEEEEEEe-CCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcc-----------
Q 032502           21 FAGGNVSLVTTKDIWDQKMSEASKEGKIVIANFS-ATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDEL-----------   88 (139)
Q Consensus        21 ~~~~~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~-~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~-----------   88 (139)
                      ..+..+|++...+...+.+.+...++|++||+|| +.||+.|....+.|.++++++.++.++.|..|..           
T Consensus        22 ~~g~~~P~f~l~~~~G~~~~l~~~~gk~vvl~f~~~~~C~~C~~~~~~l~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~  101 (171)
T 2yzh_A           22 KVGDRAPEAVVVTKDLQEKIVGGAKDVVQVIITVPSLDTPVCETETKKFNEIMAGMEGVDVTVVSMDLPFAQKRFCESFN  101 (171)
T ss_dssp             CTTSBCCCEEEEETTSCEEEESSCCSSEEEEEECSCTTSHHHHHHHHHHHHHTTTCTTEEEEEEESSCHHHHHHHHHHTT
T ss_pred             CCCCcCCceEEECCCCCEeeHHHhCCCeEEEEEECCCCCCchHHHHHHHHHHHHHcCCceEEEEeCCCHHHHHHHHHHcC
Confidence            3455566665544444556666667899999999 8999999999999999998887788888877531           


Q ss_pred             ------------hhhhhhCCCcc---------eeEEEEE-eCCeEEEEEeCC------ChHHHHHHHHHHh
Q 032502           89 ------------VEFSTSWDIKA---------TPTFFFL-KDGQQVDKLVGA------NKPELQKKVAAAV  131 (139)
Q Consensus        89 ------------~~~~~~~~v~~---------~Pt~~~~-~~g~~~~~~~g~------~~~~l~~~i~~~~  131 (139)
                                  ..+ +.|++..         +|+++++ ++|+++..+.|.      +.+++.+.|++++
T Consensus       102 ~~~~~~l~D~~~~~~-~~~gv~~~~~~~~g~~~p~~~liD~~G~i~~~~~~~~~~~~~~~~~ll~~l~~ll  171 (171)
T 2yzh_A          102 IQNVTVASDFRYRDM-EKYGVLIGEGALKGILARAVFIIDKEGKVAYVQLVPEITEEPNYDEVVNKVKELI  171 (171)
T ss_dssp             CCSSEEEECTTTCGG-GGGTCBBCSSTTTTSBCCEEEEECTTSBEEEEEECSBTTSCCCCHHHHHHHHHC-
T ss_pred             CCCeEEeecCccCcH-HHhCCEecccccCCceeeEEEEEcCCCeEEEEEeCCCcCCCCCHHHHHHHHHhhC
Confidence                        234 6677642         6887777 899999998642      4577777777653

>2r37_A Glutathione peroxidase 3; plasma, structural genomics consort oxidoreductase, secreted, selenium, selenocysteine; 1.85A {Homo sapiens}

Probab=99.50  E-value=3.2e-14  Score=94.78  Aligned_cols=97  Identities=12%  Similarity=0.106  Sum_probs=73.0

Q ss_pred             HHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCC--CcEEEEEeCCc-----------chhhhh------hCCC
Q 032502           37 QKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP--SLMFLLVDVDE-----------LVEFST------SWDI   97 (139)
Q Consensus        37 ~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~-----------~~~~~~------~~~v   97 (139)
                      +.+.++..++|++||+||++||+.| ...|.|.+++++|.  ++.++.|+++.           ...+++      +|++
T Consensus        29 ~~v~Ls~~kGKvvll~F~At~C~~c-~e~p~L~~l~~~~~~~g~~vlgvs~d~f~~~e~~~~~~i~~f~~~~~~~~~~~~  107 (207)
T 2r37_A           29 EYIPFKQYAGKYVLFVNVASYGGLT-GQYIELNALQEELAPFGLVILGFPCNQFGKQEPGENSEILPTLKYVRPGGGFVP  107 (207)
T ss_dssp             CEEEGGGGTTSEEEEEEECSSSTTT-THHHHHHHHHHHHGGGTEEEEEEECCCBTTCCCSCHHHHHHHHHHTSSCTTCCC
T ss_pred             CEEcHHHhCCCEEEEEEeCCCCCCh-HHHHHHHHHHHHhccCCEEEEEEECcccCcCCCCCHHHHHHHHHhcchhhccCc
Confidence            3456666789999999999999999 68899999999986  48888887541           122344      4432


Q ss_pred             c--------------------------------c--------------e---eE-EEEEeCCeEEEEEeCC-ChHHHHHH
Q 032502           98 K--------------------------------A--------------T---PT-FFFLKDGQQVDKLVGA-NKPELQKK  126 (139)
Q Consensus        98 ~--------------------------------~--------------~---Pt-~~~~~~g~~~~~~~g~-~~~~l~~~  126 (139)
                      .                                +              +   |+ +++.++|+++.++.|. +.+++.+.
T Consensus       108 ~fp~l~d~d~~g~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~p~~~~~i~~~~ttflID~~G~i~~~~~g~~~~~~l~~~  187 (207)
T 2r37_A          108 NFQLFEKGDVNGEKEQKFYTFLKNSCPPTSELLGTSDRLFWEPMKVHDIRWNFEKFLVGPDGIPIMRWHHRTTVSNVKMD  187 (207)
T ss_dssp             SSEEBCCCCSSSTTCCHHHHHHHHHSCCSCSCCCCGGGBCCSSCCTTCCCSTTCEEEECTTSCEEEEECTTSCHHHHHHH
T ss_pred             cceeeeEeccCCcccchHHHHHHhhCccccccccccccccccccccCcccccceEEEECCCCcEEEEECCCCCHHHHHHH
Confidence            1                                0              1   55 4445999999999887 88899999


Q ss_pred             HHHHhhcc
Q 032502          127 VAAAVDSV  134 (139)
Q Consensus       127 i~~~~~~~  134 (139)
                      |.+++...
T Consensus       188 I~~ll~~~  195 (207)
T 2r37_A          188 ILSYMRRQ  195 (207)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHhhc
Confidence            99988653

>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A

Probab=99.50  E-value=3.9e-13  Score=96.08  Aligned_cols=100  Identities=13%  Similarity=0.174  Sum_probs=81.2

Q ss_pred             chhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCC-cEEEEEeCC--cchhhhhhCCCcc--eeEEEE
Q 032502           31 TKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVD--ELVEFSTSWDIKA--TPTFFF  105 (139)
Q Consensus        31 ~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~-v~~~~vd~~--~~~~~~~~~~v~~--~Pt~~~  105 (139)
                      +.+++...+.   ...++++|+||++||+.|+.+.+.++++++++.+ +.|+.+|++  ++..+++.|||.+  +|++++
T Consensus       123 ~~~~~~~~~~---~~~~~~~v~F~~~~~~~~~~~~~~~~~~A~~~~~~i~f~~vd~~~~~~~~~~~~fgi~~~~~P~~~~  199 (361)
T 3uem_A          123 TEQTAPKIFG---GEIKTHILLFLPKSVSDYDGKLSNFKTAAESFKGKILFIFIDSDHTDNQRILEFFGLKKEECPAVRL  199 (361)
T ss_dssp             STTTHHHHHS---CSCCEEEEEECCSSSSSHHHHHHHHHHHHGGGTTTCEEEEECTTSGGGHHHHHHTTCCTTTCSEEEE
T ss_pred             CcccHHHHhc---CCCCcEEEEEEeCCchhHHHHHHHHHHHHHHccCceEEEEecCChHHHHHHHHHcCCCccCCccEEE
Confidence            4445554442   2346789999999999999999999999999975 999999999  6899999999988  999999


Q ss_pred             EeCCeEEEEEe---CC-ChHHHHHHHHHHhhc
Q 032502          106 LKDGQQVDKLV---GA-NKPELQKKVAAAVDS  133 (139)
Q Consensus       106 ~~~g~~~~~~~---g~-~~~~l~~~i~~~~~~  133 (139)
                      +..|....++.   +. +.+.|.+++...++.
T Consensus       200 ~~~~~~~~ky~~~~~~~~~~~l~~fi~~~l~g  231 (361)
T 3uem_A          200 ITLEEEMTKYKPESEELTAERITEFCHRFLEG  231 (361)
T ss_dssp             EECC--CCEECCSSCCCCHHHHHHHHHHHHTT
T ss_pred             EEcCCcccccCCCccccCHHHHHHHHHHHhcC
Confidence            98765544554   44 999999999998864

>1psq_A Probable thiol peroxidase; structural genomics, NYSGXRC, PSI, structure initiative, NEW YORK SGX research center for STRU genomics; 2.30A {Streptococcus pneumoniae} SCOP: c.47.1.10

Probab=99.50  E-value=7.9e-14  Score=89.37  Aligned_cols=110  Identities=17%  Similarity=0.078  Sum_probs=80.2

Q ss_pred             ccCCCceEEeechhHHHHHHHHHhhCCCEEEEEEe-CCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcc----------
Q 032502           20 EFAGGNVSLVTTKDIWDQKMSEASKEGKIVIANFS-ATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDEL----------   88 (139)
Q Consensus        20 ~~~~~~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~-~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~----------   88 (139)
                      ...|..+|++...+...+.+.+...++|++||+|| +.||+.|....+.|.++++++.++.++.|+.|..          
T Consensus        16 ~~~G~~~P~f~l~~~~G~~v~l~~~~gk~vvl~F~~~~~c~~C~~~~~~l~~~~~~~~~v~vv~is~d~~~~~~~~~~~~   95 (163)
T 1psq_A           16 LQVGDKALDFSLTTTDLSKKSLADFDGKKKVLSVVPSIDTGICSTQTRRFNEELAGLDNTVVLTVSMDLPFAQKRWCGAE   95 (163)
T ss_dssp             CCTTSBCCCCEEECTTSCEEEGGGGTTSEEEEEECSCTTSHHHHHHHHHHHHHTTTCTTEEEEEEESSCHHHHHHHHHHH
T ss_pred             CCCCCCCCCEEEEcCCCcEeeHHHhCCCEEEEEEECCCCCCccHHHHHHHHHHHHHcCCcEEEEEECCCHHHHHHHHHhc
Confidence            34556667666555445556666678999999999 5999999999999999998887788988887631          


Q ss_pred             -------------hhhhhhCCCc----c--eeEEEEE-eCCeEEEEEeCC------ChHHHHHHHHH
Q 032502           89 -------------VEFSTSWDIK----A--TPTFFFL-KDGQQVDKLVGA------NKPELQKKVAA  129 (139)
Q Consensus        89 -------------~~~~~~~~v~----~--~Pt~~~~-~~g~~~~~~~g~------~~~~l~~~i~~  129 (139)
                                   ..+.+.|++.    +  .|+++++ ++|+++..+.|.      +.+++.+.|++
T Consensus        96 ~~~~~~~l~D~~~~~~~~~~gv~~~~~g~~~p~~~liD~~G~i~~~~~g~~~~~~~~~~~~l~~l~~  162 (163)
T 1psq_A           96 GLDNAIMLSDYFDHSFGRDYALLINEWHLLARAVFVLDTDNTIRYVEYVDNINSEPNFEAAIAAAKA  162 (163)
T ss_dssp             TCTTSEEEECTTTCHHHHHHTCBCTTTCSBCCEEEEECTTCBEEEEEECSBTTSCCCHHHHHHHHHH
T ss_pred             CCCCcEEecCCchhHHHHHhCCccccCCceEEEEEEEcCCCeEEEEEecCCcCCCCCHHHHHHHHHh
Confidence                         2345566765    3  3887777 899999998764      22556555543

>1q98_A Thiol peroxidase, TPX; structural genomics, NYSGXRC, PSI, protein structure initiative; 1.90A {Haemophilus influenzae} SCOP: c.47.1.10

Probab=99.49  E-value=3.6e-14  Score=91.20  Aligned_cols=107  Identities=11%  Similarity=0.110  Sum_probs=78.2

Q ss_pred             cCCCceEEeechhHHHHHHHHHhhCCCEEEEEEe-CCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCc------------
Q 032502           21 FAGGNVSLVTTKDIWDQKMSEASKEGKIVIANFS-ATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDE------------   87 (139)
Q Consensus        21 ~~~~~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~-~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~------------   87 (139)
                      ..|..+|++...+...+.+.+...++|++||+|| +.||+.|....+.|.++++++.++.++.|+.|.            
T Consensus        18 ~~G~~~P~f~l~~~~G~~v~l~~~~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~   97 (165)
T 1q98_A           18 QVGEIVENFILVGNDLADVALNDFASKRKVLNIFPSIDTGVCATSVRKFNQQAAKLSNTIVLCISADLPFAQARFCGAEG   97 (165)
T ss_dssp             CTTCBCCCCEEECTTSCEEEGGGGTTSEEEEEECSCSCSSCCCHHHHHHHHHHHHSTTEEEEEEESSCHHHHTTCTTTTT
T ss_pred             CCCCCCCCeEEECCCCCEEehHHhCCCeEEEEEECCCCCCccHHHHHHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHcC
Confidence            3455666665544444556666678999999999 899999999999999999998778888887753            


Q ss_pred             -----------chhhhhhCCCcc---------eeEEEEE-eCCeEEEEEeCC---ChHHHHHHH
Q 032502           88 -----------LVEFSTSWDIKA---------TPTFFFL-KDGQQVDKLVGA---NKPELQKKV  127 (139)
Q Consensus        88 -----------~~~~~~~~~v~~---------~Pt~~~~-~~g~~~~~~~g~---~~~~l~~~i  127 (139)
                                 ...+++.|++..         .|+++++ ++|+++..+.|.   ...++.+.+
T Consensus        98 ~~~~~~l~D~~~~~~~~~~gv~~~~~~~~g~~~p~~~liD~~G~i~~~~~~~~~~~~~~~~~~l  161 (165)
T 1q98_A           98 IENAKTVSTFRNHALHSQLGVDIQTGPLAGLTSRAVIVLDEQNNVLHSQLVEEIKEEPNYEAAL  161 (165)
T ss_dssp             CTTEEEEECTTCTHHHHHTTCEECSSTTTTSBCCEEEEECTTSBEEEEEECSBTTSCCCHHHHH
T ss_pred             CCceEEeeccccchHHHHhCceecccccCCccceeEEEEcCCCEEEEEEeCCCCCCCCCHHHHH
Confidence                       234566677753         4887777 899999998753   334444443

>2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin dependant, mitochondrial, antioxidant, oxidoreductase, redox-active center; 1.78A {Plasmodium falciparum}

Probab=99.49  E-value=5.4e-14  Score=94.58  Aligned_cols=112  Identities=15%  Similarity=0.219  Sum_probs=84.1

Q ss_pred             cCCCceEEeechhH--HH--HHHHHHhh-CCCEEEEEEe-CCCChhhhhhhHhHHHHHHhCC--CcEEEEEeCCcc----
Q 032502           21 FAGGNVSLVTTKDI--WD--QKMSEASK-EGKIVIANFS-ATWCGPCRMIAPFFSELSEKYP--SLMFLLVDVDEL----   88 (139)
Q Consensus        21 ~~~~~~~~i~~~~~--~~--~~~~~~~~-~~k~vlv~f~-~~~C~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~~----   88 (139)
                      ..|..+|++...+.  ..  +.+.+... ++|++||+|| +.||+.|....+.|.++++++.  ++.++.|..|..    
T Consensus        26 ~~G~~aP~F~l~~~~~~G~~~~v~L~d~~~Gk~vvl~F~patwCp~C~~e~p~l~~l~~~~~~~~v~vv~Is~D~~~~~~  105 (221)
T 2c0d_A           26 LVTKKAYNFTAQGLNKNNEIINVDLSSFIGQKYCCLLFYPLNYTFVCPTEIIEFNKHIKDFENKNVELLGISVDSVYSHL  105 (221)
T ss_dssp             CTTSBCCCCEEEEECTTSCEEEEEGGGGTTTCEEEEEECCCCTTTCCHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHH
T ss_pred             CCCCCCCCeEEeccccCCCccEEeHHHHcCCCeEEEEEEcCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHH
Confidence            45566666654443  23  34566666 8999999999 9999999999999999998884  688988887631    


Q ss_pred             ------------------------hhhhhhCCC-----cceeEEEEE-eCCeEEEEEeCC-----ChHHHHHHHHHHhh
Q 032502           89 ------------------------VEFSTSWDI-----KATPTFFFL-KDGQQVDKLVGA-----NKPELQKKVAAAVD  132 (139)
Q Consensus        89 ------------------------~~~~~~~~v-----~~~Pt~~~~-~~g~~~~~~~g~-----~~~~l~~~i~~~~~  132 (139)
                                              ..+++.|++     ..+|+++++ ++|+++....|.     +.+++.+.|+++..
T Consensus       106 ~~~~~~~~~~g~~~~~fp~l~D~~~~~~~~ygv~~~~g~~~P~~~lID~~G~I~~~~~g~~~~~~~~~ell~~l~~L~~  184 (221)
T 2c0d_A          106 AWKNMPIEKGGIGNVEFTLVSDINKDISKNYNVLYDNSFALRGLFIIDKNGCVRHQTVNDLPIGRNVQEVLRTIDSIIH  184 (221)
T ss_dssp             HHHHSCGGGTCCCSCSSEEEECTTSHHHHHTTCEETTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHHHH
T ss_pred             HHHHHhhhhcCccCCceEEEECCchHHHHHcCCcccCCCccceEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHHhh
Confidence                                    124556787     368988777 899999988663     56788888887753

>1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein disulfide isomerase, protein folding, redox protein, redox-active center; HET: MES; 1.90A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A 2iyj_A

Probab=99.49  E-value=1.3e-13  Score=92.36  Aligned_cols=83  Identities=16%  Similarity=0.306  Sum_probs=64.9

Q ss_pred             CCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeC---------------------------------------
Q 032502           45 EGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDV---------------------------------------   85 (139)
Q Consensus        45 ~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~---------------------------------------   85 (139)
                      .++++|+.||++||++|+.+.+.+.++.+.  ++.++.+..                                       
T Consensus        85 ~~k~~vv~F~d~~Cp~C~~~~~~l~~l~~~--~v~v~~~~~p~~~~~~~s~~~a~a~~~a~d~~~~~~~~~~~~~~~~~~  162 (216)
T 1eej_A           85 QEKHVITVFTDITCGYCHKLHEQMADYNAL--GITVRYLAFPRQGLDSDAEKEMKAIWCAKDKNKAFDDVMAGKSVAPAS  162 (216)
T ss_dssp             TCCEEEEEEECTTCHHHHHHHTTHHHHHHT--TEEEEEEECCTTCSSSHHHHHHHHHHTSSSHHHHHHHHHTTCCCCCCC
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHhC--CcEEEEEECCccCCCchHHHHHHHHHhccCHHHHHHHHHhCCCCChhH
Confidence            468999999999999999999999998764  566654432                                       


Q ss_pred             -----CcchhhhhhCCCcceeEEEEEeCCeEEEEEeCC-ChHHHHHHHHHHhhc
Q 032502           86 -----DELVEFSTSWDIKATPTFFFLKDGQQVDKLVGA-NKPELQKKVAAAVDS  133 (139)
Q Consensus        86 -----~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~i~~~~~~  133 (139)
                           +++..++++|||.++||+ ++.+|+   .+.|. +.++|.++|.++...
T Consensus       163 ~~~~v~~~~~l~~~~gV~gtPt~-v~~dG~---~~~G~~~~~~l~~~l~~~~~~  212 (216)
T 1eej_A          163 CDVDIADHYALGVQLGVSGTPAV-VLSNGT---LVPGYQPPKEMKEFLDEHQKM  212 (216)
T ss_dssp             CSCCHHHHHHHHHHHTCCSSSEE-ECTTSC---EEESCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCCccCEE-EEcCCe---EecCCCCHHHHHHHHHHhhhh
Confidence                 123456788999999998 456775   45687 889999999887654

>4gqc_A Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, fully folded, locally unfolded, peroxide, DTT, structural genomics, riken; 2.00A {Aeropyrum pernix} PDB: 2cx3_A 2cx4_A 4gqf_A

Probab=99.48  E-value=7.1e-15  Score=94.59  Aligned_cols=112  Identities=16%  Similarity=0.168  Sum_probs=78.8

Q ss_pred             CCCceEEeechhHHHHHHHHHhh--CCCEEEEEEe-CCCChhhhhhhHhHHHHHHhCC--CcEEEEEeCCc---------
Q 032502           22 AGGNVSLVTTKDIWDQKMSEASK--EGKIVIANFS-ATWCGPCRMIAPFFSELSEKYP--SLMFLLVDVDE---------   87 (139)
Q Consensus        22 ~~~~~~~i~~~~~~~~~~~~~~~--~~k~vlv~f~-~~~C~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~---------   87 (139)
                      .|..+|++...+...+.+.++..  ++|++||+|| +.||+.|....+.|.++++++.  ++.++.|+.|.         
T Consensus         7 vG~~aPdF~l~~~~G~~v~Lsd~~~~Gk~vvl~f~~~~~cp~C~~e~~~l~~~~~~~~~~~v~vv~is~d~~~~~~~~~~   86 (164)
T 4gqc_A            7 LGEKAPDFTLPNQDFEPVNLYEVLKRGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEKANAEVLAISVDSPWCLKKFKD   86 (164)
T ss_dssp             TTSBCCCCEEEBTTSCEEEHHHHHHTSSCEEEEECSCTTCCEECSSCEESCCCGGGGGGSSSEEEEEESSCHHHHHHHHH
T ss_pred             CCCCCcCcEeECCCCCEEEHHHHhcCCCEEEEEEeCCCCCCCcccchhhhhhhHHHhhccCceEEEecCCCHHHHHHHHH
Confidence            45556665544443444444433  6889999988 9999999999999988888875  58898888864         


Q ss_pred             ------------chhhhhhCCCc----------ceeEEEEE-eCCeEEEEEeCC------ChHHHHHHHHHHhhc
Q 032502           88 ------------LVEFSTSWDIK----------ATPTFFFL-KDGQQVDKLVGA------NKPELQKKVAAAVDS  133 (139)
Q Consensus        88 ------------~~~~~~~~~v~----------~~Pt~~~~-~~g~~~~~~~g~------~~~~l~~~i~~~~~~  133 (139)
                                  +..+++.||+.          ..|+++++ ++|+++..+.+.      +.+++.+.++++.+.
T Consensus        87 ~~~~~fp~l~D~~~~v~~~ygv~~~~~~~~~~~~~p~tflID~~G~I~~~~~~~~~~~~~~~~eil~~l~~l~~e  161 (164)
T 4gqc_A           87 ENRLAFNLLSDYNREVIKLYNVYHEDLKGLKMVAKRAVFIVKPDGTVAYKWVTDNPLNEPDYDEVVREANKIAGE  161 (164)
T ss_dssp             HTTCCSEEEECTTSHHHHHTTCEEEEETTEEEEECCEEEEECTTSBEEEEEECSCTTCCCCHHHHHHHHHHHHHH
T ss_pred             hcCcccceeecCchHHHHHcCCcccccccCcCCeeeEEEEECCCCEEEEEEEeCCCCCCCCHHHHHHHHHHHhcc
Confidence                        23457778874          34655555 899999887543      456777777777654

>3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation, blood coagulation, oxidoreduc blood coagulation,oxidoreductase; HET: U10; 3.60A {Synechococcus SP}

Probab=99.47  E-value=8e-15  Score=101.94  Aligned_cols=71  Identities=18%  Similarity=0.375  Sum_probs=57.4

Q ss_pred             EEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEe---C-CcchhhhhhCCCcceeEEEEEeCCeEEEEEeCC-ChHHHH
Q 032502           50 IANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVD---V-DELVEFSTSWDIKATPTFFFLKDGQQVDKLVGA-NKPELQ  124 (139)
Q Consensus        50 lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd---~-~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~l~  124 (139)
                      ++.||++||++|+.+.|.+++++++++   ++.+|   . +++++++++|+|+++||+++  ||+.   +.|. +.++|.
T Consensus       201 vV~F~A~WC~~Ck~l~p~le~lA~~l~---~Vd~d~~d~~~~~~~la~~~gI~~vPT~~i--~G~~---~~G~~~~~~L~  272 (291)
T 3kp9_A          201 GTMYGAYWCPHCQDQKELFGAAFDQVP---YVECSPNGPGTPQAQECTEAGITSYPTWII--NGRT---YTGVRSLEALA  272 (291)
T ss_dssp             CEEEECTTCHHHHHHHHHHGGGGGGSC---EEESCSSCSSSCCCHHHHTTTCCSTTEEEE--TTEE---EESCCCHHHHH
T ss_pred             EEEEECCCCHHHHHHHHHHHHHHHHcC---EEEEeecCchhhHHHHHHHcCCcccCeEEE--CCEE---ecCCCCHHHHH
Confidence            689999999999999999999987764   33444   2 33789999999999999665  8874   6688 888888


Q ss_pred             HHHH
Q 032502          125 KKVA  128 (139)
Q Consensus       125 ~~i~  128 (139)
                      +++.
T Consensus       273 ~~l~  276 (291)
T 3kp9_A          273 VASG  276 (291)
T ss_dssp             HHTC
T ss_pred             HHHC
Confidence            8764

>3p7x_A Probable thiol peroxidase; thioredoxin fold, oxidoreductase; HET: PG4; 1.96A {Staphylococcus aureus} SCOP: c.47.1.0

Probab=99.47  E-value=4.9e-14  Score=90.58  Aligned_cols=98  Identities=18%  Similarity=0.162  Sum_probs=76.1

Q ss_pred             ccCCCceEEeechhHHHHHHHHHhhCCCEEEEEEe-CCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCc-----------
Q 032502           20 EFAGGNVSLVTTKDIWDQKMSEASKEGKIVIANFS-ATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDE-----------   87 (139)
Q Consensus        20 ~~~~~~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~-~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~-----------   87 (139)
                      ...|..+|++...+...+.+.+...++|+++|+|| +.||+.|....+.|.+++++ .++.++.|..|.           
T Consensus        20 l~~G~~aP~f~l~~~~G~~~~l~~~~Gk~vvl~f~~~~~c~~C~~~~~~l~~~~~~-~~~~vv~is~d~~~~~~~~~~~~   98 (166)
T 3p7x_A           20 INEGDFAPDFTVLDNDLNQVTLADYAGKKKLISVVPSIDTGVCDQQTRKFNSDASK-EEGIVLTISADLPFAQKRWCASA   98 (166)
T ss_dssp             CCTTSBCCCCEEECTTSCEEEGGGGTTSCEEEEECSCTTSHHHHHHHHHHHHHSCT-TTSEEEEEESSCHHHHHHHHHHH
T ss_pred             CCCCCCCCCeEEEcCCCCEEeHHHhCCCcEEEEEECCCCCCccHHHHHHHHHHhhc-CCCEEEEEECCCHHHHHHHHHHc
Confidence            44566777777665555667777778999999999 78999999999999999888 789999888763           


Q ss_pred             ------------chhhhhhCCCcc------eeEEEEE-eCCeEEEEEeCC
Q 032502           88 ------------LVEFSTSWDIKA------TPTFFFL-KDGQQVDKLVGA  118 (139)
Q Consensus        88 ------------~~~~~~~~~v~~------~Pt~~~~-~~g~~~~~~~g~  118 (139)
                                  ...+.+.|++..      +|+++++ ++|+++..+.+.
T Consensus        99 ~~~~~~~l~D~~~~~~~~~~gv~~~~~g~~~p~~~liD~~G~i~~~~~~~  148 (166)
T 3p7x_A           99 GLDNVITLSDHRDLSFGENYGVVMEELRLLARAVFVLDADNKVVYKEIVS  148 (166)
T ss_dssp             TCSSCEEEECTTTCHHHHHHTCEETTTTEECCEEEEECTTCBEEEEEECS
T ss_pred             CCCceEEccCCchhHHHHHhCCccccCCceeeEEEEECCCCeEEEEEEcC
Confidence                        224556677764      7987777 899999986543

>1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin, decamer, antioxidant, peroxidase, AHPF, oxidoreductase; 2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB: 1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A

Probab=99.47  E-value=1.2e-13  Score=90.46  Aligned_cols=94  Identities=18%  Similarity=0.160  Sum_probs=72.9

Q ss_pred             HHHHhhCCCEEEEEEeC-CCChhhhhhhHhHHHHHHhCC--CcEEEEEeCCcc-------------------------hh
Q 032502           39 MSEASKEGKIVIANFSA-TWCGPCRMIAPFFSELSEKYP--SLMFLLVDVDEL-------------------------VE   90 (139)
Q Consensus        39 ~~~~~~~~k~vlv~f~~-~~C~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~~-------------------------~~   90 (139)
                      +.+...++|++||+||+ .||+.|....+.|.++++++.  ++.++.|..|..                         ..
T Consensus        23 v~l~~~~Gk~vvl~F~~~~~Cp~C~~e~~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~fp~l~D~~~~  102 (186)
T 1n8j_A           23 VTEKDTEGRWSVFFFYPADFTFVSPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGA  102 (186)
T ss_dssp             EEHHHHTTSEEEEEECSCTTCSHHHHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHHHCTTGGGCCSEEEECTTSH
T ss_pred             EEHHHHCCCeEEEEEECCCCCCccHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHcCcccCCceeEEECCchH
Confidence            44445578999999995 999999999999999988875  688988887632                         12


Q ss_pred             hhhhCCCc------ceeEEEEE-eCCeEEEEEeCC-----ChHHHHHHHHHHhh
Q 032502           91 FSTSWDIK------ATPTFFFL-KDGQQVDKLVGA-----NKPELQKKVAAAVD  132 (139)
Q Consensus        91 ~~~~~~v~------~~Pt~~~~-~~g~~~~~~~g~-----~~~~l~~~i~~~~~  132 (139)
                      +++.|++.      .+|+++++ ++|+++..+.|.     +.+++.+.|+.+..
T Consensus       103 ~~~~ygv~~~~~g~~~p~~~lID~~G~i~~~~~~~~~~~~~~~~l~~~l~~l~~  156 (186)
T 1n8j_A          103 LTRNFDNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQY  156 (186)
T ss_dssp             HHHHTTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHHHH
T ss_pred             HHHHhCCccCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHHHH
Confidence            35567775      36988777 899999988764     47788888887764

>2pn8_A Peroxiredoxin-4; thioredoxin, oxidoreductase, structural genomics consortium, SGC; 1.80A {Homo sapiens}

Probab=99.45  E-value=1.6e-13  Score=91.58  Aligned_cols=111  Identities=14%  Similarity=0.147  Sum_probs=81.2

Q ss_pred             cCCCceEEeechhH---HHHHHHHHhhCCCEEEEEEe-CCCChhhhhhhHhHHHHHHhCC--CcEEEEEeCCcc------
Q 032502           21 FAGGNVSLVTTKDI---WDQKMSEASKEGKIVIANFS-ATWCGPCRMIAPFFSELSEKYP--SLMFLLVDVDEL------   88 (139)
Q Consensus        21 ~~~~~~~~i~~~~~---~~~~~~~~~~~~k~vlv~f~-~~~C~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~~------   88 (139)
                      ..|..+|++...+.   -.+.+.+...++|++||+|| ++||+.|....+.|.++++++.  ++.++.|..|..      
T Consensus        20 ~~G~~aP~f~l~~~~~~~g~~v~l~d~~Gk~vvl~F~pat~C~~C~~e~~~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~   99 (211)
T 2pn8_A           20 FQSMPAPYWEGTAVIDGEFKELKLTDYRGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSINTEVVACSVDSQFTHLAW   99 (211)
T ss_dssp             CSSCBCCCCEEEEEETTEEEEEEGGGGTTSEEEEEECSCTTSSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHH
T ss_pred             CCCCcCCCeEeecccCCCCcEEEHHHhCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHH
Confidence            44555565553321   11335555667999999999 9999999999999999998884  688998887632      


Q ss_pred             ----------------------hhhhhhCCCc------ceeEEEEE-eCCeEEEEEeCC-----ChHHHHHHHHHHh
Q 032502           89 ----------------------VEFSTSWDIK------ATPTFFFL-KDGQQVDKLVGA-----NKPELQKKVAAAV  131 (139)
Q Consensus        89 ----------------------~~~~~~~~v~------~~Pt~~~~-~~g~~~~~~~g~-----~~~~l~~~i~~~~  131 (139)
                                            ..+++.|++.      .+|+++++ ++|+++..+.|.     +.+++.+.|+.+.
T Consensus       100 ~~~~~~~~g~~~~~fp~l~D~~~~~~~~ygv~~~~~g~~~p~~~lID~~G~I~~~~~g~~~~~~~~~ell~~l~~l~  176 (211)
T 2pn8_A          100 INTPRRQGGLGPIRIPLLSDLTHQISKDYGVYLEDSGHTLRGLFIIDDKGILRQITLNDLPVGRSVDETLRLVQAFQ  176 (211)
T ss_dssp             HTSCGGGTCCCSCSSCEEECTTSHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHHH
T ss_pred             HHHhhhccCccCCceEEEECCchHHHHHcCCcccCCCcccceEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHhh
Confidence                                  1245567774      68988777 899999987653     4577888888765

>4hde_A SCO1/SENC family lipoprotein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; HET: MSE; 1.32A {Bacillus anthracis}

Probab=99.44  E-value=3.7e-13  Score=86.98  Aligned_cols=110  Identities=15%  Similarity=0.292  Sum_probs=78.3

Q ss_pred             CCCceEEeechhHHHHHHHHHhhCCCEEEEEEeCCCCh-hhhhhhHhHHHHHHhCC----CcEEEEEeCCcc---h----
Q 032502           22 AGGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCG-PCRMIAPFFSELSEKYP----SLMFLLVDVDEL---V----   89 (139)
Q Consensus        22 ~~~~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~-~C~~~~~~l~~~~~~~~----~v~~~~vd~~~~---~----   89 (139)
                      .+.++|++...+...+.+.++..+||++||+||.+||+ .|....+.|.++.+.+.    ++.++.|.+|..   +    
T Consensus         8 ~~~~~PdF~L~d~~G~~v~l~d~~Gk~vll~F~~t~Cp~~Cp~~~~~l~~l~~~~~~~~~~v~~v~isvDp~~Dtp~~l~   87 (170)
T 4hde_A            8 LNWDLETFQFTNQDGKPFGTKDLKGKVWVADFMFTNCQTVCPPMTANMAKLQKMAKEEKLDVQFVSFSVDPDLDKPENLK   87 (170)
T ss_dssp             CCBCCCCCEEECTTSCEEEHHHHTTSCEEEEEECTTCSSSHHHHHHHHHHHHHHHHHTTCCCEEEEEESCTTTCCHHHHH
T ss_pred             CCCcCCCcEEECCCCCEEeHHHhCCCEEEEEEECCCCCCcccHHHHHHHHHHHhhhcccccceeEeeecCcccccHHHHH
Confidence            45567777776666777778888999999999999997 79998888888776653    488888876521   1    


Q ss_pred             hhhhhCC------------------------------------CcceeEEEEE-eCCeEEEEEeCC---ChHHHHHHHHH
Q 032502           90 EFSTSWD------------------------------------IKATPTFFFL-KDGQQVDKLVGA---NKPELQKKVAA  129 (139)
Q Consensus        90 ~~~~~~~------------------------------------v~~~Pt~~~~-~~g~~~~~~~g~---~~~~l~~~i~~  129 (139)
                      ...++|+                                    +.-.|+++++ ++|+++..+.|.   ..+++.+.|+.
T Consensus        88 ~y~~~~~~~~~~~~~ltg~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~liD~~G~i~~~~~g~~~~~~~~l~~~ik~  167 (170)
T 4hde_A           88 AFIQKFTEDTSNWNLLTGYSLEDITKFSKDNFQSLVDKPENGQVIHGTSFYLIDQNGKVMKKYSGISNTPYEDIIRDMKR  167 (170)
T ss_dssp             HHHTTTCSCCTTEEEEBCSCHHHHHHHHHHHHCCCCBCCTTSCCBCCCEEEEECTTSCEEEEEESSSSCCHHHHHHHHHH
T ss_pred             HHHHHcCCCCCCceecCcccHHHHHHHHHhcccccccCCCCceEEeeeEEEEEcCCCeEEEEECCCCCCCHHHHHHHHHH
Confidence            1222222                                    1123555555 999999999876   45778887777


Q ss_pred             Hh
Q 032502          130 AV  131 (139)
Q Consensus       130 ~~  131 (139)
                      ++
T Consensus       168 Ll  169 (170)
T 4hde_A          168 LA  169 (170)
T ss_dssp             HH
T ss_pred             Hh
Confidence            65

>1t3b_A Thiol:disulfide interchange protein DSBC; oxidoreductase, protein disulfide isomerase, protein folding, redox protein; 2.50A {Haemophilus influenzae} SCOP: c.47.1.9 d.17.3.1

Probab=99.40  E-value=8.3e-13  Score=88.17  Aligned_cols=80  Identities=15%  Similarity=0.342  Sum_probs=62.5

Q ss_pred             CCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCC--------------------------------------
Q 032502           45 EGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVD--------------------------------------   86 (139)
Q Consensus        45 ~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~--------------------------------------   86 (139)
                      .++++|+.||.+|||+|+.+.+.+.++.+.  ++.+..+...                                      
T Consensus        85 ~~k~~vv~F~d~~Cp~C~~~~~~l~~~~~~--~v~v~~~~~p~~~~~~~s~~~a~~~~~a~d~~~a~~~~~~~~~~~~~~  162 (211)
T 1t3b_A           85 NEKHVVTVFMDITCHYCHLLHQQLKEYNDL--GITVRYLAFPRAGMNNQTAKQMEAIWTAKDPVFALNEAEKGNLPKEVK  162 (211)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHTTHHHHHHT--TEEEEEEECCSSTTCSHHHHHHHHHHHSSSHHHHHHHHHTTCCCSSCC
T ss_pred             CCCEEEEEEECCCCHhHHHHHHHHHHHHhC--CcEEEEEECCccCCCchHHHHHHHHHhCcCHHHHHHHHHcCCCCChHH
Confidence            467999999999999999999999998663  5665544331                                      


Q ss_pred             ------cchhhhhhCCCcceeEEEEEeCCeEEEEEeCC-ChHHHHHHHHHH
Q 032502           87 ------ELVEFSTSWDIKATPTFFFLKDGQQVDKLVGA-NKPELQKKVAAA  130 (139)
Q Consensus        87 ------~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~i~~~  130 (139)
                            ++..+++++||.++||+++ .||+   .+.|. +.++|.++|++.
T Consensus       163 ~~~~v~~~~~l~~~~gV~gTPt~vi-~nG~---~~~G~~~~~~l~~~l~~~  209 (211)
T 1t3b_A          163 TPNIVKKHYELGIQFGVRGTPSIVT-STGE---LIGGYLKPADLLRALEET  209 (211)
T ss_dssp             CSSHHHHHHHHHHHHTCCSSCEEEC-TTSC---CCCSCCCHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHcCCCcCCEEEE-eCCE---EecCCCCHHHHHHHHHhc
Confidence                  2345677899999999988 7786   45687 888999888754

>3qpm_A Peroxiredoxin; oxidoreductase, thioredoxin fold, peroxidase; 1.90A {Larimichthys crocea}

Probab=99.40  E-value=6.9e-13  Score=90.21  Aligned_cols=112  Identities=13%  Similarity=0.108  Sum_probs=83.0

Q ss_pred             ccCCCceEEeech---hHHHHHHHHHhhCCCEEEEEEeC-CCChhhhhhhHhHHHHHHhCC--CcEEEEEeCCcc-----
Q 032502           20 EFAGGNVSLVTTK---DIWDQKMSEASKEGKIVIANFSA-TWCGPCRMIAPFFSELSEKYP--SLMFLLVDVDEL-----   88 (139)
Q Consensus        20 ~~~~~~~~~i~~~---~~~~~~~~~~~~~~k~vlv~f~~-~~C~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~~-----   88 (139)
                      ...|..+|++...   +.-.+.+.+...++|++||+||+ .||+.|....+.|.++++++.  ++.++.|..|..     
T Consensus        48 l~vG~~aPdF~l~~~~d~~G~~vsLsd~~Gk~vvL~F~~~~~cp~C~~el~~l~~l~~~~~~~gv~vv~Is~D~~~~~~~  127 (240)
T 3qpm_A           48 AKISKPAPQWEGTAVINGEFKELKLSDYRGKYLVFFFYPLDFTFVCPTEIIAFSDRVHEFRAINTEVVACSVDSQFTHLA  127 (240)
T ss_dssp             CCTTSBCCCCEEEEEETTEEEEEEGGGGTTSEEEEEECSCTTSSHHHHHHHHHHHHHHHHHTTTEEEEEEESSCHHHHHH
T ss_pred             CCCCCCCCCcEeeeeeCCCCcEEEHHHhCCCEEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHH
Confidence            3466677777632   21122456666789999999998 999999999999999999985  588888888632     


Q ss_pred             -----------------------hhhhhhCCCc------ceeEEEEE-eCCeEEEEEeCC-----ChHHHHHHHHHHh
Q 032502           89 -----------------------VEFSTSWDIK------ATPTFFFL-KDGQQVDKLVGA-----NKPELQKKVAAAV  131 (139)
Q Consensus        89 -----------------------~~~~~~~~v~------~~Pt~~~~-~~g~~~~~~~g~-----~~~~l~~~i~~~~  131 (139)
                                             ..+++.||+.      .+|+++++ ++|+++....+.     ..+++.+.|+.+.
T Consensus       128 ~~~~~~~~~~~~~~~fp~l~D~~~~v~~~ygv~~~~~g~~~p~~flID~~G~I~~~~~~~~~~~~~~~eil~~l~~lq  205 (240)
T 3qpm_A          128 WIITPRKQGGLGPMKIPLLSDLTHQISKDYGVYLEDQGHTLRGLFIIDEKGVLRQITMNDLPVGRSVDETLRLVQAFQ  205 (240)
T ss_dssp             HHHSCGGGTCCCSCSSCEEECTTSHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHHH
T ss_pred             HHHHHHhhcCCCCCceeEEeCchHHHHHHhCCccccCCCccceEEEEcCCCeEEEEEecCCCCCCCHHHHHHHHHHhh
Confidence                                   2346678886      68987777 899999887653     4567777776654

>2wfc_A Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidant enzymes; 1.75A {Arenicola marina}

Probab=99.39  E-value=7.6e-13  Score=85.32  Aligned_cols=96  Identities=16%  Similarity=0.158  Sum_probs=68.5

Q ss_pred             CCceEEeech-hHHHHHHHHHhh-CCCEEEEEEe-CCCChhhhh-hhHhHHHHHHhCC--Cc-EEEEEeCCcc-------
Q 032502           23 GGNVSLVTTK-DIWDQKMSEASK-EGKIVIANFS-ATWCGPCRM-IAPFFSELSEKYP--SL-MFLLVDVDEL-------   88 (139)
Q Consensus        23 ~~~~~~i~~~-~~~~~~~~~~~~-~~k~vlv~f~-~~~C~~C~~-~~~~l~~~~~~~~--~v-~~~~vd~~~~-------   88 (139)
                      |..+|++... +...+.+.+... ++|++||+|| +.||+.|+. ..|.|.++++++.  ++ .++.|+.|..       
T Consensus         6 G~~aP~f~l~~~~~G~~v~L~d~~~Gk~vvl~f~~a~wcp~C~~~e~p~l~~~~~~~~~~gv~~vv~Is~d~~~~~~~~~   85 (167)
T 2wfc_A            6 GDKLPAVTVFGATPNDKVNMAELFAGKKGVLFAVPGAFTPGSSKTHLPGYVEQAAAIHGKGVDIIACMAVNDSFVMDAWG   85 (167)
T ss_dssp             TCBCCCCEEESSSTTCEEEHHHHTTTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHHTTCCEEEEEESSCHHHHHHHH
T ss_pred             CCcCCCcEeecCCCCcEEeHHHHhCCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHH
Confidence            4444554443 333344555555 7888999887 999999999 9999999888774  68 9999988632       


Q ss_pred             ----------------hhhhhhCCCcce-----------eEEEEEeCCeEEEEEeCC
Q 032502           89 ----------------VEFSTSWDIKAT-----------PTFFFLKDGQQVDKLVGA  118 (139)
Q Consensus        89 ----------------~~~~~~~~v~~~-----------Pt~~~~~~g~~~~~~~g~  118 (139)
                                      ..+++.||+...           |+++++++|+++....+.
T Consensus        86 ~~~~~~~~fp~l~D~~~~~~~~~gv~~~~~~~~g~~~~~p~t~lI~~G~I~~~~~~~  142 (167)
T 2wfc_A           86 KAHGADDKVQMLADPGGAFTKAVDMELDLSAVLGNVRSKRYSLVIEDGVVTKVNVEP  142 (167)
T ss_dssp             HHTTCTTTSEEEECTTSHHHHHTTCEECCHHHHSSCEECCEEEEEETTEEEEEEECT
T ss_pred             HhcCCCcceEEEECCCCcHHHHcCCccccccccCcccceEEEEEEeCCEEEEEEecC
Confidence                            234667787653           865555999999987765

>3a2v_A Probable peroxiredoxin; thioredoxin peroxidase, hydrogen peroxide, antioxidant, oxidoreductase, redox-active center; 1.65A {Aeropyrum pernix} PDB: 1x0r_A 2zct_A 2nvl_A 2e2g_A 2cv4_A* 3a5w_A 2e2m_A 3a2x_A 3a2w_A

Probab=99.39  E-value=4.4e-13  Score=91.54  Aligned_cols=110  Identities=14%  Similarity=0.119  Sum_probs=79.9

Q ss_pred             CCCceEEeechhHHHHHHHH-Hhh--CCCEE-EEEEeCCCChhhhhhhHhHHHHHHhCC--CcEEEEEeCCcc-------
Q 032502           22 AGGNVSLVTTKDIWDQKMSE-ASK--EGKIV-IANFSATWCGPCRMIAPFFSELSEKYP--SLMFLLVDVDEL-------   88 (139)
Q Consensus        22 ~~~~~~~i~~~~~~~~~~~~-~~~--~~k~v-lv~f~~~~C~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~~-------   88 (139)
                      .|..+|++...+... .+.+ ...  .++.+ |+.||++||+.|....+.|.+++++|.  ++.++.|++|..       
T Consensus         7 iG~~aPdF~l~~~~G-~v~l~~d~l~~GK~vVL~~fpa~~CpvC~tEl~~l~~l~~ef~~~gv~VI~VS~Ds~~~~~~w~   85 (249)
T 3a2v_A            7 IGERFPEMEVTTDHG-VIKLPDHYVSQGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRLGVDLIGLSVDSVFSHIKWK   85 (249)
T ss_dssp             TTSBCCCEEEEETTE-EEEETHHHHTTTCEEEEECCSCTTCHHHHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHH
T ss_pred             CCCCCCCeEEEcCCC-CEecHHHHhhCCCEEEEEEEcCCCCcChHHHHHHHHHHHHHHHhCCcEEEEEECCCHHHHHHHH
Confidence            344455544322222 2444 444  78864 557789999999999999999998886  699999988742       


Q ss_pred             --------------------hhhhhhCCCc-------ceeEEEEE-eCCeEEEEEeCC-----ChHHHHHHHHHHhh
Q 032502           89 --------------------VEFSTSWDIK-------ATPTFFFL-KDGQQVDKLVGA-----NKPELQKKVAAAVD  132 (139)
Q Consensus        89 --------------------~~~~~~~~v~-------~~Pt~~~~-~~g~~~~~~~g~-----~~~~l~~~i~~~~~  132 (139)
                                          ..+++.||+.       .+|+++++ ++|+++....|.     +.+++.+.|+++..
T Consensus        86 ~~~~~~~~~~i~fPil~D~~~~ia~~ygv~~~~~g~~~~p~~fIID~dG~I~~~~~~~~~~gr~~~Ellr~I~alq~  162 (249)
T 3a2v_A           86 EWIERHIGVRIPFPIIADPQGTVARRLGLLHAESATHTVRGVFIVDARGVIRTMLYYPMELGRLVDEILRIVKALKL  162 (249)
T ss_dssp             HHHHHHTCCCCCSCEEECTTSHHHHHHTCCCTTCSSSCCEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCCCceeEEECCchHHHHHhCCccccCCCcccceEEEECCCCeEEEEEecCCcccchhHHHHHHHHHHHh
Confidence                                3467788886       89977777 899999887654     57888888888764

>3mng_A Peroxiredoxin-5, mitochondrial; peroxidase, PRXV, substrate analog, DTT, oxidoreductase; 1.45A {Homo sapiens} SCOP: c.47.1.10 PDB: 2vl3_A 1oc3_A 2vl2_A 2vl9_A 1urm_A 1hd2_A 1h4o_A

Probab=99.38  E-value=6.1e-13  Score=86.29  Aligned_cols=120  Identities=15%  Similarity=0.110  Sum_probs=77.8

Q ss_pred             cCCCCCCCCCcccCCCceEEeech-hHHHHHHHHHh-hCCCEEEEEEe-CCCChhhh-hhhHhHHHHHHhCC--CcEEEE
Q 032502            9 QHDEEDGEHPVEFAGGNVSLVTTK-DIWDQKMSEAS-KEGKIVIANFS-ATWCGPCR-MIAPFFSELSEKYP--SLMFLL   82 (139)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~~-~~~k~vlv~f~-~~~C~~C~-~~~~~l~~~~~~~~--~v~~~~   82 (139)
                      +.+-.....++...|..+|++... +...+.+.+.. .++|++||+|| +.||+.|. ...+.|.++++++.  ++.++.
T Consensus         4 ~~~~~~~~~~~~~vG~~aPdf~l~~~~~g~~v~L~d~~~gk~vvL~f~pa~wcp~C~~~e~p~l~~~~~~~~~~gv~vv~   83 (173)
T 3mng_A            4 SHHHHHHGSAPIKVGDAIPAVEVFEGEPGNKVNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKAKGVQVVA   83 (173)
T ss_dssp             ---------CCCCTTCBCCCCEEECSSTTCEEEHHHHTTTSEEEEEECSCTTCHHHHHTHHHHHHHTHHHHHTTTCCEEE
T ss_pred             ccccccCCCCCCCCCCCCCCeEeeeCCCCCEEEhHHHhCCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence            344455556677788888888766 44455566666 47887766665 99999999 58999999988874  577775


Q ss_pred             -EeCCc-----------------------chhhhhhCCCc-------------ceeEEEEEeCCeEEEEEeCC-----Ch
Q 032502           83 -VDVDE-----------------------LVEFSTSWDIK-------------ATPTFFFLKDGQQVDKLVGA-----NK  120 (139)
Q Consensus        83 -vd~~~-----------------------~~~~~~~~~v~-------------~~Pt~~~~~~g~~~~~~~g~-----~~  120 (139)
                       +..|.                       +..+++.||+.             ..|+.+++.+|+++..+.+.     +.
T Consensus        84 ~iS~D~~~~~~~f~~~~~~~~~fp~l~D~~~~va~~yGv~~~~~~~~~~g~~~~~r~tfvIDdG~I~~~~v~~~~~g~~~  163 (173)
T 3mng_A           84 CLSVNDAFVTGEWGRAHKAEGKVRLLADPTGAFGKETDLLLDDSLVSIFGNRRLKRFSMVVQDGIVKALNVEPDGTGLTC  163 (173)
T ss_dssp             EEESSCHHHHHHHHHHTTCTTTCEEEECTTCHHHHHHTCBCCSTTHHHHSSCCBCCEEEEEETTEEEEEEECTTSSCSST
T ss_pred             EEcCCCHHHHHHHHHHhCCCCceEEEECCChHHHHHhCCCcccccccccCCcceEEEEEEEECCEEEEEEEeCCCCCcch
Confidence             77753                       12456677775             34765555599999988764     34


Q ss_pred             HHHHHHHH
Q 032502          121 PELQKKVA  128 (139)
Q Consensus       121 ~~l~~~i~  128 (139)
                      .+..+.|+
T Consensus       164 ~~~~~vl~  171 (173)
T 3mng_A          164 SLAPNIIS  171 (173)
T ss_dssp             TSHHHHHH
T ss_pred             HHHHHHHH
Confidence            44555444

>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10

Probab=99.37  E-value=1.5e-12  Score=88.40  Aligned_cols=80  Identities=18%  Similarity=0.295  Sum_probs=62.5

Q ss_pred             HHHHh-hCCCEEEEEEe-CCCChhhh-hhhHhHHHHHHhCC--Cc-EEEEEeCCcc----------------------hh
Q 032502           39 MSEAS-KEGKIVIANFS-ATWCGPCR-MIAPFFSELSEKYP--SL-MFLLVDVDEL----------------------VE   90 (139)
Q Consensus        39 ~~~~~-~~~k~vlv~f~-~~~C~~C~-~~~~~l~~~~~~~~--~v-~~~~vd~~~~----------------------~~   90 (139)
                      +.+.. .++|++||+|| +.||+.|+ ...|.|.++++++.  ++ .++.|+.|..                      ..
T Consensus        25 v~l~~~~~gk~vvl~f~~a~~cp~C~~~e~~~l~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~  104 (241)
T 1nm3_A           25 VTTSELFDNKTVIVFSLPGAFTPTCSSSHLPRYNELAPVFKKYGVDDILVVSVNDTFVMNAWKEDEKSENISFIPDGNGE  104 (241)
T ss_dssp             EEHHHHHTTSEEEEEEESCSSCHHHHHTHHHHHHHHHHHHHHTTCCEEEEEESSCHHHHHHHHHHTTCTTSEEEECTTSH
T ss_pred             ecHHHHhCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEcCCHHHHHHHHHhcCCCceEEEECCCcH
Confidence            34444 57899999999 99999999 99999999988874  68 8999988641                      23


Q ss_pred             hhhhCCCc-----------ceeEEEEEeCCeEEEEEeCC
Q 032502           91 FSTSWDIK-----------ATPTFFFLKDGQQVDKLVGA  118 (139)
Q Consensus        91 ~~~~~~v~-----------~~Pt~~~~~~g~~~~~~~g~  118 (139)
                      +++.||+.           ..|+.+++++|+++..+.|.
T Consensus       105 ~~~~~gv~~~~~~~g~~~~~~p~t~li~~G~i~~~~~~~  143 (241)
T 1nm3_A          105 FTEGMGMLVGKEDLGFGKRSWRYSMLVKNGVVEKMFIEP  143 (241)
T ss_dssp             HHHHTTCEEECTTTTCCEEECCEEEEEETTEEEEEEECC
T ss_pred             HHHHhCceeecccccCcccceeEEEEEECCEEEEEEEec
Confidence            56678875           34765555999999998876

>3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond, redox-active center, transcription regulator; HET: MSE GOL; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: c.47.1.0

Probab=99.34  E-value=5.6e-12  Score=82.71  Aligned_cols=88  Identities=19%  Similarity=0.286  Sum_probs=69.5

Q ss_pred             CCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCC-cEEEEEeCCc------------------------------------
Q 032502           45 EGKIVIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVDE------------------------------------   87 (139)
Q Consensus        45 ~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~-v~~~~vd~~~------------------------------------   87 (139)
                      .++++|+.||.+||++|+.+.+.+.++.+++++ +.|..+...-                                    
T Consensus        24 ~~~~~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~~v~~~~~p~~~~~~~~~aa~a~~aa~~~g~~~~~~~~lf~~~~~~~~  103 (192)
T 3h93_A           24 PGKIEVVELFWYGCPHCYAFEPTIVPWSEKLPADVHFVRLPALFGGIWNVHGQMFLTLESMGVEHDVHNAVFEAIHKEHK  103 (192)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHTCCTTEEEEEEECCCSTHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHTSCC
T ss_pred             CCCCEEEEEECCCChhHHHhhHHHHHHHHhCCCCeEEEEEehhhccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCc
Confidence            478999999999999999999999999999985 6666554420                                    


Q ss_pred             -------------------------------------chhhhhhCCCcceeEEEEEeCCeEEEEEeCC-ChHHHHHHHHH
Q 032502           88 -------------------------------------LVEFSTSWDIKATPTFFFLKDGQQVDKLVGA-NKPELQKKVAA  129 (139)
Q Consensus        88 -------------------------------------~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~i~~  129 (139)
                                                           +...+..+||.++||+++  ||+......|. +.+.|.+.|+.
T Consensus       104 ~~~~~~~l~~~a~~~Gld~~~~~~~~~~~~~~~~v~~~~~~a~~~gv~gtPt~~v--ng~~~~~~~G~~~~e~l~~~i~~  181 (192)
T 3h93_A          104 KLATPEEMADFLAGKGVDKEKFLSTYNSFAIKGQMEKAKKLAMAYQVTGVPTMVV--NGKYRFDIGSAGGPEETLKLADY  181 (192)
T ss_dssp             CCCSHHHHHHHHHTTTCCHHHHHHHHTCHHHHHHHHHHHHHHHHHTCCSSSEEEE--TTTEEEEHHHHTSHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHcCCCHHHHHHHhhCHHHHHHHHHHHHHHHHhCCCCCCeEEE--CCEEEecccccCCHHHHHHHHHH
Confidence                                                 012345679999999998  88876554466 88999999999


Q ss_pred             Hhhcc
Q 032502          130 AVDSV  134 (139)
Q Consensus       130 ~~~~~  134 (139)
                      ++++.
T Consensus       182 l~~k~  186 (192)
T 3h93_A          182 LIEKE  186 (192)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88764

>3tjj_A Peroxiredoxin-4; thioredoxin fold, sulfenylation, endoplasmic reticulum, oxidoreductase; HET: CSO; 1.91A {Homo sapiens} PDB: 3tjk_A 3tjb_A 3tjf_A 3tjg_A 3tkq_A 3tkp_A 3tks_A 3tkr_A 3tks_C

Probab=99.32  E-value=1.6e-12  Score=89.03  Aligned_cols=112  Identities=13%  Similarity=0.113  Sum_probs=81.8

Q ss_pred             ccCCCceEEeech---hHHHHHHHHHhhCCCEEEEEEe-CCCChhhhhhhHhHHHHHHhCC--CcEEEEEeCCcc-----
Q 032502           20 EFAGGNVSLVTTK---DIWDQKMSEASKEGKIVIANFS-ATWCGPCRMIAPFFSELSEKYP--SLMFLLVDVDEL-----   88 (139)
Q Consensus        20 ~~~~~~~~~i~~~---~~~~~~~~~~~~~~k~vlv~f~-~~~C~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~~-----   88 (139)
                      ...|..+|++...   +.-.+.+.+...++|++||+|| +.||+.|....+.|.+++++|.  ++.++.|..|..     
T Consensus        62 l~vG~~aPdF~l~~l~d~~G~~vsLsd~kGK~vvL~F~~a~~cp~C~~el~~l~~l~~~~~~~gv~vv~IS~D~~~~~~~  141 (254)
T 3tjj_A           62 AKISKPAPYWEGTAVIDGEFKELKLTDYRGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSINTEVVACSVDSQFTHLA  141 (254)
T ss_dssp             CCTTSBCCCCEEEEEETTEEEEEEGGGGTTSEEEEEECSCTTCSSCCHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHH
T ss_pred             cCCCCCCCCcEeeeecCCCCcEEeHHHHCCCeEEEEEECCCCCCchHHHHHHHHHHHHHHHHcCCEEEEEcCCCHHHHHH
Confidence            4466777777632   2112345666678999999999 9999999999999999999885  588998888642     


Q ss_pred             -----------------------hhhhhhCCCc------ceeEEEEE-eCCeEEEEEeCC-----ChHHHHHHHHHHh
Q 032502           89 -----------------------VEFSTSWDIK------ATPTFFFL-KDGQQVDKLVGA-----NKPELQKKVAAAV  131 (139)
Q Consensus        89 -----------------------~~~~~~~~v~------~~Pt~~~~-~~g~~~~~~~g~-----~~~~l~~~i~~~~  131 (139)
                                             ..+++.||+.      .+|+++++ ++|+++..+.+.     +.+++.+.|+.+.
T Consensus       142 ~~~~~~~~~g~~~~~fp~l~D~~~~va~~ygv~~~~~g~~~p~tflID~~G~I~~~~~~~~~~~~~~~eil~~L~alq  219 (254)
T 3tjj_A          142 WINTPRRQGGLGPIRIPLLSDLTHQISKDYGVYLEDSGHTLRGLFIIDDKGILRQITLNDLPVGRSVDETLRLVQAFQ  219 (254)
T ss_dssp             HHTSCGGGTSCCSCSSCEEECTTSHHHHHHTCEETTTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCcccccceeeCcHHHHHHHcCCccccCCCccceEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHhhc
Confidence                                   1345567764      47877777 899999887652     4567777776653

>1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain swapping, electron transport; 2.69A {Corynebacterium ammoniagenes} SCOP: c.47.1.1

Probab=99.32  E-value=1.1e-11  Score=69.15  Aligned_cols=69  Identities=17%  Similarity=0.251  Sum_probs=55.2

Q ss_pred             EEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhhhh---hCCCcceeEEEEEeCCeEEEEEeCCChHHHHHH
Q 032502           50 IANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFST---SWDIKATPTFFFLKDGQQVDKLVGANKPELQKK  126 (139)
Q Consensus        50 lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~---~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~l~~~  126 (139)
                      ++.|+++||++|+.+.+.|+++     ++.|..+|++.++...+   ++++.++|++++  +|+.   +.|.+.++|.++
T Consensus         3 i~~y~~~~C~~C~~~~~~l~~~-----~i~~~~~di~~~~~~~~~~~~~~~~~vP~l~~--~g~~---~~g~~~~~l~~~   72 (75)
T 1r7h_A            3 ITLYTKPACVQCTATKKALDRA-----GLAYNTVDISLDDEARDYVMALGYVQAPVVEV--DGEH---WSGFRPERIKQL   72 (75)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT-----TCCCEEEETTTCHHHHHHHHHTTCBCCCEEEE--TTEE---EESCCHHHHHHH
T ss_pred             EEEEeCCCChHHHHHHHHHHHc-----CCCcEEEECCCCHHHHHHHHHcCCCccCEEEE--CCeE---EcCCCHHHHHHH
Confidence            5679999999999999998765     57788889988766555   899999999884  7764   457788887776


Q ss_pred             HH
Q 032502          127 VA  128 (139)
Q Consensus       127 i~  128 (139)
                      |+
T Consensus        73 l~   74 (75)
T 1r7h_A           73 QA   74 (75)
T ss_dssp             HC
T ss_pred             Hh
Confidence            63

>1v58_A Thiol:disulfide interchange protein DSBG; reduced DSBG, redox protein, protein disulfide isomerase, thioredoxin fold; 1.70A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1v57_A 2h0i_A 2h0h_A 2h0g_A 2iy2_A

Probab=99.32  E-value=1.2e-11  Score=84.14  Aligned_cols=87  Identities=10%  Similarity=0.285  Sum_probs=65.2

Q ss_pred             CCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCC--------------------------------------
Q 032502           45 EGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVD--------------------------------------   86 (139)
Q Consensus        45 ~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~--------------------------------------   86 (139)
                      ..+++|+.|+.+|||+|+++.+.+.++.+. .++.+..+...                                      
T Consensus        96 ~ak~~v~~F~D~~Cp~C~~~~~~l~~~~~~-g~v~v~~~~~p~~~~~s~~~a~a~~~a~d~~~~~~~~~~~~~~~~l~~~  174 (241)
T 1v58_A           96 DAPVIVYVFADPFCPYCKQFWQQARPWVDS-GKVQLRTLLVGVIKPESPATAAAILASKDPAKTWQQYEASGGKLKLNVP  174 (241)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHHHHHHHHHT-TSEEEEEEECCCSSTTHHHHHHHHHHSSSHHHHHHHHHHTTTCCCCCCC
T ss_pred             CCCeEEEEEECCCChhHHHHHHHHHHHHhC-CcEEEEEEECCcCCCcHHHHHHHHHHccCHHHHHHHHHHHhccCCCCcc
Confidence            457889999999999999999999988776 46777665541                                      


Q ss_pred             ------------cchhhhhhCCCcceeEEEEEe-CCeEEEEEeCC-ChHHHHHHHHHHhhc
Q 032502           87 ------------ELVEFSTSWDIKATPTFFFLK-DGQQVDKLVGA-NKPELQKKVAAAVDS  133 (139)
Q Consensus        87 ------------~~~~~~~~~~v~~~Pt~~~~~-~g~~~~~~~g~-~~~~l~~~i~~~~~~  133 (139)
                                  .+..+++++||.++||+++.. +|+. ....|. +.+.|.++|++.++.
T Consensus       175 ~~~~~~~~~~v~~~~~l~~~~gv~gtPt~vi~~~~G~~-~~~~G~~~~~~L~~~l~~~~~~  234 (241)
T 1v58_A          175 ANVSTEQMKVLSDNEKLMDDLGANVTPAIYYMSKENTL-QQAVGLPDQKTLNIIMGNKLQH  234 (241)
T ss_dssp             SSCCHHHHHHHHHHHHHHHHHTCCSSCEEEEEETTTEE-EEEESSCCHHHHHHHTTC----
T ss_pred             ccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCE-EEecCCCCHHHHHHHHHHHHHh
Confidence                        123356789999999999985 5765 567788 888998888776553

>3hd5_A Thiol:disulfide interchange protein DSBA; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.35A {Bordetella parapertussis}

Probab=99.31  E-value=1.2e-11  Score=81.39  Aligned_cols=88  Identities=24%  Similarity=0.347  Sum_probs=67.6

Q ss_pred             CCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCC-cEEEEEeCCcc-----------------------------------
Q 032502           45 EGKIVIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVDEL-----------------------------------   88 (139)
Q Consensus        45 ~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~-v~~~~vd~~~~-----------------------------------   88 (139)
                      .++++|+.||.+||++|+.+.+.+.++.+.+++ +.|..++++-+                                   
T Consensus        24 ~~~~~vv~f~d~~Cp~C~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~s~~aa~a~~aa~~~g~~~~~~~lf~~~~~~~~~  103 (195)
T 3hd5_A           24 PGKIEVLEFFAYTCPHCAAIEPMVEDWAKTAPQDVVLKQVPIAFNAGMKPLQQLYYTLQALERPDLHPKVFTAIHTERKR  103 (195)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHTCCTTEEEEEEECCSSGGGHHHHHHHHHHHHTTCTTHHHHHHHHHHTSCCC
T ss_pred             CCCeEEEEEECCCCccHHHhhHHHHHHHHHCCCCeEEEEEecccCcchHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccC
Confidence            478999999999999999999999999999984 88877776410                                   


Q ss_pred             -------------------------------------hhhhhhCCCcceeEEEEEeCCeEEEEEeCC-Ch-HHHHHHHHH
Q 032502           89 -------------------------------------VEFSTSWDIKATPTFFFLKDGQQVDKLVGA-NK-PELQKKVAA  129 (139)
Q Consensus        89 -------------------------------------~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~-~~l~~~i~~  129 (139)
                                                           ...+..+||.++||+++  ||+.+..-... +. +.+.+.|+.
T Consensus       104 ~~~~~~l~~~a~~~Gld~~~~~~~~~s~~~~~~v~~~~~~a~~~gv~gtPt~vi--ng~~~~~g~~~~~~~e~~~~~i~~  181 (195)
T 3hd5_A          104 LFDKKAMGEWAASQGVDRAKFDSVFDSFSVQTQVQRASQLAEAAHIDGTPAFAV--GGRYMTSPVLAGNDYAGALKVVDQ  181 (195)
T ss_dssp             CCSHHHHHHHHHHTTCCHHHHHHHHTCHHHHHHHHHHHHHHHHTTCCSSSEEEE--TTTEEECTTTTTGGGTTHHHHHHH
T ss_pred             CCCHHHHHHHHHHhCCCHHHHHHHHcCHHHHHHHHHHHHHHHHhCCCcCceEEE--CCEEEeCccccCChHHHHHHHHHH
Confidence                                                 11245689999999998  78754432122 44 788888888


Q ss_pred             Hhhcc
Q 032502          130 AVDSV  134 (139)
Q Consensus       130 ~~~~~  134 (139)
                      ++.+.
T Consensus       182 L~~~~  186 (195)
T 3hd5_A          182 LIVQS  186 (195)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88764

>3uma_A Hypothetical peroxiredoxin protein; nysgrc, PSI biology, structural genomics, NEW YORK structura genomics research consortium; 2.20A {Sinorhizobium meliloti}

Probab=99.30  E-value=4.4e-12  Score=82.99  Aligned_cols=109  Identities=14%  Similarity=0.180  Sum_probs=72.8

Q ss_pred             ccCCCceEEeechhH--HH-HHHHHHh-hCCCEEEEE-EeCCCChhhhh-hhHhHHHHHHhCC--CcE-EEEEeCCcc--
Q 032502           20 EFAGGNVSLVTTKDI--WD-QKMSEAS-KEGKIVIAN-FSATWCGPCRM-IAPFFSELSEKYP--SLM-FLLVDVDEL--   88 (139)
Q Consensus        20 ~~~~~~~~~i~~~~~--~~-~~~~~~~-~~~k~vlv~-f~~~~C~~C~~-~~~~l~~~~~~~~--~v~-~~~vd~~~~--   88 (139)
                      ...|..+|++...+.  .. +.+.+.. .++|+++|+ ||+.||+.|+. ..|.|.++++++.  ++. ++.|+.+..  
T Consensus        26 l~vG~~aPdf~l~~~~~~G~~~v~L~d~~~Gk~vvL~f~~a~wcp~C~~~e~p~l~~~~~~~~~~gv~~vv~Is~d~~~~  105 (184)
T 3uma_A           26 IAVGDKLPNATFKEKTADGPVEVTTELLFKGKRVVLFAVPGAFTPTCSLNHLPGYLENRDAILARGVDDIAVVAVNDLHV  105 (184)
T ss_dssp             CCTTCBCCCCEEEEEETTEEEEEEHHHHHTTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHTTTCCEEEEEESSCHHH
T ss_pred             CCCCCCCCCcEeecccCCCceEEeHHHHhCCCCEEEEEEcCCCCCCcCHHHHHHHHHHHHHHHHcCCCEEEEEECCCHHH
Confidence            355666666654432  22 3455555 568865555 56999999999 6999999998874  588 999988641  


Q ss_pred             ---------------------hhhhhhCCCcc-----------eeEEEEEeCCeEEEEEeCC-----ChHHHHHHHH
Q 032502           89 ---------------------VEFSTSWDIKA-----------TPTFFFLKDGQQVDKLVGA-----NKPELQKKVA  128 (139)
Q Consensus        89 ---------------------~~~~~~~~v~~-----------~Pt~~~~~~g~~~~~~~g~-----~~~~l~~~i~  128 (139)
                                           ..+++.||+..           .|+.+++++|+++..+.+.     +...+++.|+
T Consensus       106 ~~~f~~~~~~~~~fp~l~D~~~~va~~yGv~~~~~~~g~g~~~~r~tfiIddG~I~~~~~~~~~g~~~~~~~~~vL~  182 (184)
T 3uma_A          106 MGAWATHSGGMGKIHFLSDWNAAFTKAIGMEIDLSAGTLGIRSKRYSMLVEDGVVKALNIEESPGQATASGAAAMLE  182 (184)
T ss_dssp             HHHHHHHHTCTTTSEEEECTTCHHHHHTTCEEEEGGGTCEEEECCEEEEEETTEEEEEEECSSTTCCSTTSHHHHHH
T ss_pred             HHHHHHHhCCCCceEEEEcCchHHHHHcCCceeccccCCcccceeEEEEECCCEEEEEEEeCCCCCCcCCCHHHHHh
Confidence                                 23566788753           3555555899999998765     2344555544

>1h75_A Glutaredoxin-like protein NRDH; electron transport, thioredoxin, redox protein; 1.7A {Escherichia coli} SCOP: c.47.1.1

Probab=99.30  E-value=3.3e-12  Score=72.48  Aligned_cols=71  Identities=14%  Similarity=0.254  Sum_probs=54.0

Q ss_pred             EEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhhhh---hCCCcceeEEEEEeCCeEEEEEeCCChHHHHHH
Q 032502           50 IANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFST---SWDIKATPTFFFLKDGQQVDKLVGANKPELQKK  126 (139)
Q Consensus        50 lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~---~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~l~~~  126 (139)
                      ++.|+++||++|+.+.+.|++.     ++.|..+|+++++++.+   ++++.++|+++  .+|+.   ..|.+.++|.++
T Consensus         3 v~~f~~~~C~~C~~~~~~l~~~-----~i~~~~vdi~~~~~~~~~~~~~g~~~vP~~~--~~g~~---~~g~~~~~l~~~   72 (81)
T 1h75_A            3 ITIYTRNDCVQCHATKRAMENR-----GFDFEMINVDRVPEAAEALRAQGFRQLPVVI--AGDLS---WSGFRPDMINRL   72 (81)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT-----TCCCEEEETTTCHHHHHHHHHTTCCSSCEEE--ETTEE---EESCCHHHHGGG
T ss_pred             EEEEcCCCChhHHHHHHHHHHC-----CCCeEEEECCCCHHHHHHHHHhCCCccCEEE--ECCEE---EecCCHHHHHHH
Confidence            5679999999999999998764     57788899987765543   58999999984  37764   346777777666


Q ss_pred             HHHH
Q 032502          127 VAAA  130 (139)
Q Consensus       127 i~~~  130 (139)
                      |+++
T Consensus        73 l~~~   76 (81)
T 1h75_A           73 HPAP   76 (81)
T ss_dssp             SCCC
T ss_pred             Hhcc
Confidence            5443

>1tp9_A Peroxiredoxin, PRX D (type II); oligomer, thioredoxin fold, oxidoreductase; 1.62A {Populus trichocarpa} SCOP: c.47.1.10

Probab=99.29  E-value=3.8e-12  Score=81.51  Aligned_cols=80  Identities=16%  Similarity=0.218  Sum_probs=61.2

Q ss_pred             HHHHh-hCCCEEEEEEe-CCCChhhh-hhhHhHHHHHHhCC--CcE-EEEEeCCc-----------------------ch
Q 032502           39 MSEAS-KEGKIVIANFS-ATWCGPCR-MIAPFFSELSEKYP--SLM-FLLVDVDE-----------------------LV   89 (139)
Q Consensus        39 ~~~~~-~~~k~vlv~f~-~~~C~~C~-~~~~~l~~~~~~~~--~v~-~~~vd~~~-----------------------~~   89 (139)
                      +.+.. .++|++||+|| +.||+.|. ...+.|.++++++.  ++. ++.|..|.                       +.
T Consensus        27 ~~l~~~~~gk~vvl~f~~~~~c~~C~~~e~~~l~~~~~~~~~~~v~~vv~Is~d~~~~~~~~~~~~~~~~~~~~l~D~~~  106 (162)
T 1tp9_A           27 VSVHSLVAGKKVILFGVPGAFTPTCSLKHVPGFIEKAGELKSKGVTEILCISVNDPFVMKAWAKSYPENKHVKFLADGSA  106 (162)
T ss_dssp             EESHHHHTTSEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHHTTCCCEEEEESSCHHHHHHHHHTCTTCSSEEEEECTTS
T ss_pred             EeHHHHhCCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHhcCCCCCeEEEECCCc
Confidence            33444 57899999999 89999999 89999999988874  688 88887763                       12


Q ss_pred             hhhhhCCCc-----------ceeEEEEEeCCeEEEEEeCC
Q 032502           90 EFSTSWDIK-----------ATPTFFFLKDGQQVDKLVGA  118 (139)
Q Consensus        90 ~~~~~~~v~-----------~~Pt~~~~~~g~~~~~~~g~  118 (139)
                      .+++.||+.           ..|+++++.+|+++..+.+.
T Consensus       107 ~~~~~~gv~~~~~~~g~~~~~~p~~~vid~G~i~~~~~~~  146 (162)
T 1tp9_A          107 TYTHALGLELDLQEKGLGTRSRRFALLVDDLKVKAANIEG  146 (162)
T ss_dssp             HHHHHTTCEEEETTTTSEEEECCEEEEEETTEEEEEEECS
T ss_pred             hHHHHcCcccccccCCCCccceeEEEEEECCEEEEEEeeC
Confidence            356677875           27876665699999888765

>4dvc_A Thiol:disulfide interchange protein DSBA; pilus assembly, oxidoreductase, thioredoxin fold, D disulfide bond, DSBB; HET: DMS; 1.20A {Vibrio cholerae} PDB: 2ijy_A 1bed_A

Probab=99.26  E-value=3e-11  Score=78.37  Aligned_cols=87  Identities=15%  Similarity=0.251  Sum_probs=67.3

Q ss_pred             CCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCC-cEEEEEeCC--c----------------------------------
Q 032502           45 EGKIVIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVD--E----------------------------------   87 (139)
Q Consensus        45 ~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~-v~~~~vd~~--~----------------------------------   87 (139)
                      .++++||.|+.-.||+|+.+.+.+.++.+++++ +.+......  .                                  
T Consensus        20 ~~~~~vvEf~dy~Cp~C~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~a~~~~~~~~~~~~~~~~~~~~~~~~   99 (184)
T 4dvc_A           20 SSSPVVSEFFSFYCPHCNTFEPIIAQLKQQLPEGAKFQKNHVSFMGGNMGQAMSKAYATMIALEVEDKMVPVMFNRIHTL   99 (184)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHTSCTTCEEEEEECSSSSGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTS
T ss_pred             CCCCEEEEEECCCCHhHHHHhHHHHHHHhhcCCceEEEEEecCCCCCchHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHH
Confidence            367899999999999999999999999999974 666554431  0                                  


Q ss_pred             ---------------------------------------chhhhhhCCCcceeEEEEEeCCeEEEEEeCC-ChHHHHHHH
Q 032502           88 ---------------------------------------LVEFSTSWDIKATPTFFFLKDGQQVDKLVGA-NKPELQKKV  127 (139)
Q Consensus        88 ---------------------------------------~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~i  127 (139)
                                                             +..+++++||.++|||++  ||+.+-...+. +.+++.+.|
T Consensus       100 ~~~~~~~~~l~~~a~~~Gld~~~~~~~~~s~~~~~~v~~~~~~a~~~gv~gTPtfiI--NGky~v~~~~~~s~e~~~~~i  177 (184)
T 4dvc_A          100 RKPPKDEQELRQIFLDEGIDAAKFDAAYNGFAVDSMVHRFDKQFQDSGLTGVPAVVV--NNRYLVQGQSAKSLDEYFDLV  177 (184)
T ss_dssp             CCCCSSHHHHHHHHHTTTCCHHHHHHHHTSHHHHHHHHHHHHHHHHHTCCSSSEEEE--TTTEEECGGGCSSHHHHHHHH
T ss_pred             hhccchHHHHHHHHHHhCCCHHHHHHHHhCHHHHHHHHHHHHHHHHcCCCcCCEEEE--CCEEeeCCcCCCCHHHHHHHH
Confidence                                                   112356789999999998  89855443445 889999999


Q ss_pred             HHHhhc
Q 032502          128 AAAVDS  133 (139)
Q Consensus       128 ~~~~~~  133 (139)
                      +.++.+
T Consensus       178 ~~Ll~k  183 (184)
T 4dvc_A          178 NYLLTL  183 (184)
T ss_dssp             HHHTTC
T ss_pred             HHHHhC
Confidence            988765

>3keb_A Probable thiol peroxidase; structural genomics, APC40679, PSI-2, Pro structure initiative; HET: MSE; 1.80A {Chromobacterium violaceum}

Probab=99.26  E-value=1.7e-11  Score=82.33  Aligned_cols=112  Identities=11%  Similarity=0.054  Sum_probs=82.4

Q ss_pred             ccCCCceEEeechhHHHHHHHHHhhCCCEEEEEEeCCC-Chhhh-----hhhHhHHHHHHhCCCcEEEEEeCCc------
Q 032502           20 EFAGGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATW-CGPCR-----MIAPFFSELSEKYPSLMFLLVDVDE------   87 (139)
Q Consensus        20 ~~~~~~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~-C~~C~-----~~~~~l~~~~~~~~~v~~~~vd~~~------   87 (139)
                      ...|..+|++...+.....+.+....+|++||+||..| |+.|.     ...+.|.++   +.++.++.|+.|.      
T Consensus        22 l~vG~~APdFtL~d~~G~~vsLsd~~Gk~vVL~F~ps~~cp~C~~~~~~~El~~~~~~---~~gv~VvgIS~Ds~~~~~~   98 (224)
T 3keb_A           22 PRKGDYLPSFMLVDDQKHDAALESFSHTPKLIVTLLSVDEDEHAGLLLLRETRRFLDS---WPHLKLIVITVDSPSSLAR   98 (224)
T ss_dssp             CCTTCBCCCCEEEETTSCEEEGGGGTTCCEEEEECSCTTCSTTTSHHHHHHHHHHHTT---CTTSEEEEEESSCHHHHHH
T ss_pred             CCCCCCCCCeEEECCCCCEEeHHHhCCCcEEEEEEeCCCCCCCCCCccHHHHHHHHHH---cCCCEEEEEECCCHHHHHH
Confidence            45566777776555445556777778999999999887 99999     777777665   5788898888752      


Q ss_pred             -----------------chhhhhhCCCcc---------eeEEEEE-eCCeEEEEEeCC------ChHHHHHHHHHHhhcc
Q 032502           88 -----------------LVEFSTSWDIKA---------TPTFFFL-KDGQQVDKLVGA------NKPELQKKVAAAVDSV  134 (139)
Q Consensus        88 -----------------~~~~~~~~~v~~---------~Pt~~~~-~~g~~~~~~~g~------~~~~l~~~i~~~~~~~  134 (139)
                                       +..+++.||+..         .|+++++ ++|+++......      +.+++.+.|.++....
T Consensus        99 f~~~~gl~~fplLsD~~~~~vak~yGv~~~~~~~~G~~~p~tfvID~dG~I~~~~~~~~~~~~pd~~evl~~L~~l~~~~  178 (224)
T 3keb_A           99 ARHEHGLPNIALLSTLRGRDFHKRYGVLITEYPLSGYTSPAIILADAANVVHYSERLANTRDFFDFDAIEKLLQEGEQQA  178 (224)
T ss_dssp             HHHHHCCTTCEEEESTTCTTHHHHTTCBCCSTTSTTCBCCEEEEECTTCBEEEEEECSBTTCCCCHHHHHHHHHHHHHHC
T ss_pred             HHHHcCCCCceEEEcCCchHHHHHhCCccccccccCCccCEEEEEcCCCEEEEEEecCCCCCCCCHHHHHHHHHHhhhcc
Confidence                             245677898864         6877666 899999876532      5778888888776553

>1xcc_A 1-Cys peroxiredoxin; unknown function, structural genomics, structural genomics consortium, SGC; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 PDB: 3tb2_A

Probab=99.24  E-value=1.6e-11  Score=82.46  Aligned_cols=109  Identities=10%  Similarity=0.133  Sum_probs=75.2

Q ss_pred             CCceEEeechhH--HHHHHHHHhhCCC--EEEEEEeCCCChhhhhhhHhHHHHHHhCC--CcEEEEEeCCcc--------
Q 032502           23 GGNVSLVTTKDI--WDQKMSEASKEGK--IVIANFSATWCGPCRMIAPFFSELSEKYP--SLMFLLVDVDEL--------   88 (139)
Q Consensus        23 ~~~~~~i~~~~~--~~~~~~~~~~~~k--~vlv~f~~~~C~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~~--------   88 (139)
                      |..+|++...+.  .. .+.+....++  .+|+.||++||+.|....+.|.++++++.  ++.++.|.+|..        
T Consensus         6 G~~aP~F~l~~~~~~G-~v~l~d~~Gk~~vvL~f~~a~~cp~C~~el~~l~~l~~~f~~~~v~vi~vS~D~~~~~~~~~~   84 (220)
T 1xcc_A            6 GATFPNFTAKASGIDG-DFELYKYIENSWAILFSHPNDFTPVCTTELAELGKMHEDFLKLNCKLIGFSCNSKESHDKWIE   84 (220)
T ss_dssp             TCBCCCCEECBTTCSS-CEEHHHHTTTSEEEEECCSCTTCHHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHH
T ss_pred             CCCCCCcEeecccCCC-cEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHH
Confidence            444444443332  22 3444555676  44455589999999999999999998875  588998888642        


Q ss_pred             --------------------hhhhhhCCCc------------ceeEEEEE-eCCeEEEEEeC-----CChHHHHHHHHHH
Q 032502           89 --------------------VEFSTSWDIK------------ATPTFFFL-KDGQQVDKLVG-----ANKPELQKKVAAA  130 (139)
Q Consensus        89 --------------------~~~~~~~~v~------------~~Pt~~~~-~~g~~~~~~~g-----~~~~~l~~~i~~~  130 (139)
                                          ..+++.||+.            .+|+++++ ++|+++..+.+     .+.+++.+.|+++
T Consensus        85 ~i~~~~~~~~~~fpil~D~~~~va~~ygv~~~~~~~~~g~~~~~p~~flID~~G~I~~~~~~~~~~g~~~~ell~~i~~l  164 (220)
T 1xcc_A           85 DIKYYGKLNKWEIPIVCDESRELANKLKIMDEQEKDITGLPLTCRCLFFISPEKKIKATVLYPATTGRNAHEILRVLKSL  164 (220)
T ss_dssp             HHHHHHTCSCCCCCEEECTTSHHHHHHTCEEEEEECTTSCEEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred             HHHHHhcCCCCcceeEECchhHHHHHhCCCCcccccCCCCCcccceEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHH
Confidence                                1245567763            36887777 89999988753     3678888888887


Q ss_pred             hh
Q 032502          131 VD  132 (139)
Q Consensus       131 ~~  132 (139)
                      ..
T Consensus       165 q~  166 (220)
T 1xcc_A          165 QL  166 (220)
T ss_dssp             HH
T ss_pred             Hh
Confidence            54

>1prx_A HORF6; peroxiredoxin, hydrogen peroxide, redox regulation, cellular signaling, antioxidant; 2.00A {Homo sapiens} SCOP: c.47.1.10

Probab=99.22  E-value=4.2e-11  Score=80.59  Aligned_cols=109  Identities=10%  Similarity=0.136  Sum_probs=75.0

Q ss_pred             CCceEEeechhHHHHHHHHHhhCCC--EEEEEEeCCCChhhhhhhHhHHHHHHhCC--CcEEEEEeCCcch---------
Q 032502           23 GGNVSLVTTKDIWDQKMSEASKEGK--IVIANFSATWCGPCRMIAPFFSELSEKYP--SLMFLLVDVDELV---------   89 (139)
Q Consensus        23 ~~~~~~i~~~~~~~~~~~~~~~~~k--~vlv~f~~~~C~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~~~---------   89 (139)
                      |..+|++...+... .+.+....++  .+|+.||++||+.|....+.|.++++++.  ++.++.|.+|...         
T Consensus         8 G~~aP~F~l~~~~G-~v~l~d~~Gk~~vvL~~~~a~~cp~C~~el~~l~~l~~~f~~~~v~vi~IS~D~~~~~~~~~~~i   86 (224)
T 1prx_A            8 GDVAPNFEANTTVG-RIRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAKRNVKLIALSIDSVEDHLAWSKDI   86 (224)
T ss_dssp             TCBCCCCEEEETTE-EEEHHHHHTTSEEEEEEESCSSCHHHHHHHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHH
T ss_pred             cCCCCCcEEecCCC-CEEHHHHcCCCeEEEEEECCCCCCCcHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHH
Confidence            34444444322222 3444444566  55556689999999999999999998885  5888888876421         


Q ss_pred             ----------------------hhhhhCCCc------------ceeEEEEE-eCCeEEEEEeCC-----ChHHHHHHHHH
Q 032502           90 ----------------------EFSTSWDIK------------ATPTFFFL-KDGQQVDKLVGA-----NKPELQKKVAA  129 (139)
Q Consensus        90 ----------------------~~~~~~~v~------------~~Pt~~~~-~~g~~~~~~~g~-----~~~~l~~~i~~  129 (139)
                                            .+++.||+.            .+|+++++ ++|+++..+.+.     +.+++.+.|+.
T Consensus        87 ~~~~~~~~~~~~~fpil~D~~~~va~~ygv~~~~~~~~~g~~~~~p~~fiID~~G~I~~~~~~~~~~gr~~~eil~~i~~  166 (224)
T 1prx_A           87 NAYNSEEPTEKLPFPIIDDRNRELAILLGMLDPAEKDEKGMPVTARVVFVFGPDKKLKLSILYPATTGRNFDEILRVVIS  166 (224)
T ss_dssp             HHHTTSCCCSCCSSCEEECTTCHHHHHTTSSCSCTTCSSSCCTTCCEEEEECTTSBEEEEEECCTTBCCCHHHHHHHHHH
T ss_pred             HHhhCcccccCcCcceeecCchHHHHHhCCCCcccccCCCccccceEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHH
Confidence                                  235567763            37887777 899999988642     67888888887


Q ss_pred             Hhh
Q 032502          130 AVD  132 (139)
Q Consensus       130 ~~~  132 (139)
                      +..
T Consensus       167 l~~  169 (224)
T 1prx_A          167 LQL  169 (224)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            754

>2v2g_A Peroxiredoxin 6; oxidoreductase, antioxidant enzymes; 1.60A {Arenicola marina} PDB: 2v32_A 2v41_A

Probab=99.22  E-value=3.5e-11  Score=81.44  Aligned_cols=110  Identities=9%  Similarity=0.078  Sum_probs=77.5

Q ss_pred             CCCceEEeechhHHHHHHHHHhhCCC-EEEEEEe-CCCChhhhhhhHhHHHHHHhCC--CcEEEEEeCCcch--------
Q 032502           22 AGGNVSLVTTKDIWDQKMSEASKEGK-IVIANFS-ATWCGPCRMIAPFFSELSEKYP--SLMFLLVDVDELV--------   89 (139)
Q Consensus        22 ~~~~~~~i~~~~~~~~~~~~~~~~~k-~vlv~f~-~~~C~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~~~--------   89 (139)
                      .|..+|++...+... .+.+....++ ++||+|| ++||+.|....+.|.++++++.  ++.++.|.+|...        
T Consensus         5 iG~~aPdF~l~~~~G-~v~l~d~~Gk~~vvL~f~pa~~cpvC~~el~~l~~l~~ef~~~~v~vigIS~D~~~~~~~~~~~   83 (233)
T 2v2g_A            5 LGEVFPNFEADSTIG-KLKFHDWLGNSWGVLFSHPRDFTPVSTTELGRVIQLEGDFKKRGVKLIALSCDNVADHKEWSED   83 (233)
T ss_dssp             TTCBCCCCEEEETTC-CEEHHHHHCSSEEEEEECSCSSCHHHHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHHH
T ss_pred             CCCCCCCcEEecCCC-CEEHHHHCCCCeEEEEEECCCCCCCcHHHHHHHHHHHHHHHHcCCEEEEEcCCCHHHHHHHHHH
Confidence            344445444333322 3445555576 8999998 9999999999999999988874  6888888876421        


Q ss_pred             ---------------------hhhhhCCCc------------ceeEEEEE-eCCeEEEEEeCC-----ChHHHHHHHHHH
Q 032502           90 ---------------------EFSTSWDIK------------ATPTFFFL-KDGQQVDKLVGA-----NKPELQKKVAAA  130 (139)
Q Consensus        90 ---------------------~~~~~~~v~------------~~Pt~~~~-~~g~~~~~~~g~-----~~~~l~~~i~~~  130 (139)
                                           .+++.||+.            .+|+++++ ++|+++..+.+.     +.+++.+.|+.+
T Consensus        84 i~~~~~~~~~~~fpil~D~~~~va~~ygv~~~~~~~~~g~~~~~p~~fiID~~G~I~~~~~~~~~~gr~~~eilr~l~~L  163 (233)
T 2v2g_A           84 VKCLSGVKGDMPYPIIADETRELAVKLGMVDPDERTSTGMPLTCRAVFIIGPDKKLKLSILYPATTGRNFSEILRVIDSL  163 (233)
T ss_dssp             HHHHHTCCSSCSSCEEECTTCHHHHHTTCEEEEEECTTCCEEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred             HHHhhCcccCCceEEEECChHHHHHHhCCcCcccccCCCcccccceEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHH
Confidence                                 234556764            46887777 899999887542     578888888877


Q ss_pred             hh
Q 032502          131 VD  132 (139)
Q Consensus       131 ~~  132 (139)
                      ..
T Consensus       164 q~  165 (233)
T 2v2g_A          164 QL  165 (233)
T ss_dssp             HH
T ss_pred             Hh
Confidence            54

>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}

Probab=99.21  E-value=9.3e-11  Score=68.26  Aligned_cols=76  Identities=17%  Similarity=0.364  Sum_probs=59.4

Q ss_pred             EEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhhhhh-----CCCcceeEEEEEeCCeEEEEEeCCChHHHH
Q 032502           50 IANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTS-----WDIKATPTFFFLKDGQQVDKLVGANKPELQ  124 (139)
Q Consensus        50 lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~-----~~v~~~Pt~~~~~~g~~~~~~~g~~~~~l~  124 (139)
                      |+.|+.+|||+|.+....|.+.     ++.|..+|++++++..+.     -|.+.+|++++ .+|.++   .|++.++|.
T Consensus         6 I~vYs~~~Cp~C~~aK~~L~~~-----gi~y~~idi~~d~~~~~~~~~~~~G~~tVP~I~i-~Dg~~l---~~~~~~el~   76 (92)
T 2lqo_A            6 LTIYTTSWCGYCLRLKTALTAN-----RIAYDEVDIEHNRAAAEFVGSVNGGNRTVPTVKF-ADGSTL---TNPSADEVK   76 (92)
T ss_dssp             EEEEECTTCSSHHHHHHHHHHT-----TCCCEEEETTTCHHHHHHHHHHSSSSSCSCEEEE-TTSCEE---ESCCHHHHH
T ss_pred             EEEEcCCCCHhHHHHHHHHHhc-----CCceEEEEcCCCHHHHHHHHHHcCCCCEeCEEEE-eCCEEE---eCCCHHHHH
Confidence            5668999999999999988764     788889999887765433     27889998754 677643   477899999


Q ss_pred             HHHHHHhhcc
Q 032502          125 KKVAAAVDSV  134 (139)
Q Consensus       125 ~~i~~~~~~~  134 (139)
                      ++|.++.+.-
T Consensus        77 ~~L~el~gL~   86 (92)
T 2lqo_A           77 AKLVKIAGLE   86 (92)
T ss_dssp             HHHHHHHCCS
T ss_pred             HHHHHhcCCc
Confidence            9999887643

>1kte_A Thioltransferase; redox-active center, electron transport, acetylation; 2.20A {Sus scrofa} SCOP: c.47.1.1 PDB: 1jhb_A 1b4q_A*

Probab=99.20  E-value=1.2e-11  Score=73.47  Aligned_cols=60  Identities=18%  Similarity=0.273  Sum_probs=46.3

Q ss_pred             EEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcc-------hhhhhhCCCcceeEEEEEeCCeEEE
Q 032502           50 IANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDEL-------VEFSTSWDIKATPTFFFLKDGQQVD  113 (139)
Q Consensus        50 lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~-------~~~~~~~~v~~~Pt~~~~~~g~~~~  113 (139)
                      ++.|+++||++|+.+.+.|.++...+++  |..+|++.+       ..+.+.+|+.++|++++  +|+.+.
T Consensus        14 v~~f~~~~C~~C~~~~~~L~~~~~~~~~--~~~vdi~~~~~~~~~~~~l~~~~g~~~vP~i~~--~g~~i~   80 (105)
T 1kte_A           14 VVVFIKPTCPFCRKTQELLSQLPFKEGL--LEFVDITATSDTNEIQDYLQQLTGARTVPRVFI--GKECIG   80 (105)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHSCBCTTS--EEEEEGGGSTTHHHHHHHHHHHHSCCCSCEEEE--TTEEEE
T ss_pred             EEEEEcCCCHhHHHHHHHHHHcCCCCCc--cEEEEccCCCCHHHHHHHHHHHhCCCCcCeEEE--CCEEEe
Confidence            5669999999999999999887655544  555676654       35777899999999744  887654

>3hz8_A Thiol:disulfide interchange protein DSBA; thiol-oxidoreductase, disulfide bond; 1.45A {Neisseria meningitidis MC58} PDB: 3dvw_A 3a3t_A

Probab=99.19  E-value=3.8e-11  Score=79.00  Aligned_cols=87  Identities=18%  Similarity=0.319  Sum_probs=67.6

Q ss_pred             CCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCC-cEEEEEeCCcc-----------------------------------
Q 032502           45 EGKIVIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVDEL-----------------------------------   88 (139)
Q Consensus        45 ~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~-v~~~~vd~~~~-----------------------------------   88 (139)
                      .++++|+.||..||++|+.+.+.+.++.+++++ +.|..+++.-+                                   
T Consensus        23 ~~~v~vv~f~d~~Cp~C~~~~~~l~~~~~~~~~~v~~~~~p~~~~~~~~~aa~a~~aa~~~g~~~~~~~~~~lf~a~~~~  102 (193)
T 3hz8_A           23 AGKVEVLEFFGYFCPHCAHLEPVLSKHAKSFKDDMYLRTEHVVWQKEMLTLARLAAAVDMAAADSKDVANSHIFDAMVNQ  102 (193)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHTTCCTTEEEEEEECCCSGGGHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHTS
T ss_pred             CCCcEEEEEECCCChhHHHHHHHHHHHHHHCCCCeEEEEecCCCCcccHHHHHHHHHHHHcCchhHHhHHHHHHHHHHHh
Confidence            468999999999999999999999999999985 77776665210                                   


Q ss_pred             -----------------------------------------hhhhhhCCCcceeEEEEEeCCeEEEEEeCCChHHHHHHH
Q 032502           89 -----------------------------------------VEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKV  127 (139)
Q Consensus        89 -----------------------------------------~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~l~~~i  127 (139)
                                                               ...+..+||.++||+++  ||+.+..  +.+.+.+.+.|
T Consensus       103 ~~~~~~~~~l~~~a~~~~Gld~~~~~~~~~s~~~~~~v~~~~~~a~~~gv~gtPt~vv--ng~~~~~--~~~~e~l~~~i  178 (193)
T 3hz8_A          103 KIKLQNPEVLKKWLGEQTAFDGKKVLAAYESPESQARADKMQELTETFQIDGVPTVIV--GGKYKVE--FADWESGMNTI  178 (193)
T ss_dssp             CCCTTSHHHHHHHHHHCTTTTHHHHHHHHHSHHHHHHHHHHHHHHHHTTCCSSSEEEE--TTTEEEC--CSSHHHHHHHH
T ss_pred             CcCCCCHHHHHHHHHHccCCCHHHHHHHHcCHHHHHHHHHHHHHHHHhCCCcCCEEEE--CCEEEec--CCCHHHHHHHH
Confidence                                                     01234578999999998  7875542  33888999999


Q ss_pred             HHHhhccC
Q 032502          128 AAAVDSVV  135 (139)
Q Consensus       128 ~~~~~~~~  135 (139)
                      +.++.+..
T Consensus       179 ~~ll~k~r  186 (193)
T 3hz8_A          179 DLLADKVR  186 (193)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99887653

>2hze_A Glutaredoxin-1; thioredoxin fold, arsenic, dimethylarsenite., electron trans oxidoreductase; 1.80A {Ectromelia virus} PDB: 2hzf_A 2hze_B

Probab=99.15  E-value=1.2e-11  Score=74.76  Aligned_cols=61  Identities=23%  Similarity=0.368  Sum_probs=46.4

Q ss_pred             EEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcch-------hhhhhCCCcceeEEEEEeCCeEEE
Q 032502           49 VIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELV-------EFSTSWDIKATPTFFFLKDGQQVD  113 (139)
Q Consensus        49 vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~-------~~~~~~~v~~~Pt~~~~~~g~~~~  113 (139)
                      .++.|+++||++|+.+.+.|.++...++.  |..+|++.++       ++.+.+|+.++|++++  +|+.+.
T Consensus        20 ~vv~f~~~~Cp~C~~~~~~L~~~~~~~~~--~~~vdi~~~~~~~~~~~~l~~~~g~~~vP~v~i--~g~~ig   87 (114)
T 2hze_A           20 KVTIFVKYTCPFCRNALDILNKFSFKRGA--YEIVDIKEFKPENELRDYFEQITGGKTVPRIFF--GKTSIG   87 (114)
T ss_dssp             CEEEEECTTCHHHHHHHHHHTTSCBCTTS--EEEEEGGGSSSHHHHHHHHHHHHSCCSSCEEEE--TTEEEE
T ss_pred             CEEEEEeCCChhHHHHHHHHHHcCCCcCc--eEEEEccCCCChHHHHHHHHHHhCCCCcCEEEE--CCEEEe
Confidence            36679999999999999988765322211  7788888764       6788899999998755  887654

>2pwj_A Mitochondrial peroxiredoxin; alpha and beta protein, oxidoreductase; 2.80A {Pisum sativum}

Probab=99.15  E-value=1.5e-11  Score=79.48  Aligned_cols=73  Identities=18%  Similarity=0.352  Sum_probs=54.7

Q ss_pred             CCC-EEEEEEeCCCChhhhhh-hHhHHHHHHhCC--CcE-EEEEeCCcc-----------------------hhhhhhCC
Q 032502           45 EGK-IVIANFSATWCGPCRMI-APFFSELSEKYP--SLM-FLLVDVDEL-----------------------VEFSTSWD   96 (139)
Q Consensus        45 ~~k-~vlv~f~~~~C~~C~~~-~~~l~~~~~~~~--~v~-~~~vd~~~~-----------------------~~~~~~~~   96 (139)
                      +++ ++|+.||+.||+.|+.. .|.|.++++++.  ++. ++.|+.+..                       ..+++.||
T Consensus        42 ~gk~vvl~~~~a~wcp~C~~eh~p~l~~~~~~~~~~g~~~vv~Is~d~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~yg  121 (171)
T 2pwj_A           42 KDKKVVIFGLPGAYTGVCSSKHVPPYKHNIDKFKAKGVDSVICVAINDPYTVNAWAEKIQAKDAIEFYGDFDGSFHKSLE  121 (171)
T ss_dssp             TTSEEEEEECSCTTCTTHHHHTHHHHHHTHHHHHHTTCSEEEEEESSCHHHHHHHHHHTTCTTTSEEEECTTCHHHHHHT
T ss_pred             CCCCEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHHhCCCCceEEEECCccHHHHHhC
Confidence            565 66778899999999998 999999888874  688 989887631                       12455566


Q ss_pred             Ccc-----------e-eEEEEEeCCeEEEEEeCC
Q 032502           97 IKA-----------T-PTFFFLKDGQQVDKLVGA  118 (139)
Q Consensus        97 v~~-----------~-Pt~~~~~~g~~~~~~~g~  118 (139)
                      +..           . +++++. +|+++..+.+.
T Consensus       122 v~~~~~~~~~g~~~~~~t~~I~-~G~I~~~~~~~  154 (171)
T 2pwj_A          122 LTTDLSAGLLGIRSERWSAYVV-DGKVKALNVEE  154 (171)
T ss_dssp             CEEECTTTTCCEEECCEEEEEE-TTEEEEEEECS
T ss_pred             CccccccccCCcccceeEEEEE-CCEEEEEEeec
Confidence            642           2 366666 99999988775

>3gv1_A Disulfide interchange protein; neisseria gonorrhoeae (strain 700825 / FA 1090), DSBC, structural genomics, unknown funct 2; 2.00A {Neisseria gonorrhoeae}

Probab=99.15  E-value=1.2e-10  Score=73.58  Aligned_cols=82  Identities=21%  Similarity=0.402  Sum_probs=63.2

Q ss_pred             CCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCC--------------------------------------
Q 032502           45 EGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVD--------------------------------------   86 (139)
Q Consensus        45 ~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~--------------------------------------   86 (139)
                      .++.+|+.|+.++|++|+++.+.+.++    +++.++..+..                                      
T Consensus        13 ~a~~~vv~f~D~~Cp~C~~~~~~l~~l----~~v~v~~~~~P~~~~~~~s~~~a~a~~ca~d~~~a~~~~~~~g~~~~~~   88 (147)
T 3gv1_A           13 NGKLKVAVFSDPDCPFCKRLEHEFEKM----TDVTVYSFMMPIAGLHPDAARKAQILWCQPDRAKAWTDWMRKGKFPVGG   88 (147)
T ss_dssp             TCCEEEEEEECTTCHHHHHHHHHHTTC----CSEEEEEEECCCTTTCTTHHHHHHHHHTSSSHHHHHHHHHHHCCCCTTC
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHhhc----CceEEEEEEccccccChhHHHHHHHHHcCCCHHHHHHHHHhCCCCCCcc
Confidence            468999999999999999999988654    56666655431                                      


Q ss_pred             --------cchhhhhhCCCcceeEEEEEeCCeEEEEEeCC-ChHHHHHHHHHHhhcc
Q 032502           87 --------ELVEFSTSWDIKATPTFFFLKDGQQVDKLVGA-NKPELQKKVAAAVDSV  134 (139)
Q Consensus        87 --------~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~i~~~~~~~  134 (139)
                              ++..+++++||+++||+++ .||+   ...|. +.+.|.+.|++.++..
T Consensus        89 ~~~~~~v~~~~~la~~~gI~gtPt~vi-~nG~---~i~G~~~~~~l~~~i~~~~~~~  141 (147)
T 3gv1_A           89 SICDNPVAETTSLGEQFGFNGTPTLVF-PNGR---TQSGYSPMPQLEEIIRKNQQEG  141 (147)
T ss_dssp             CCCSCSHHHHHHHHHHTTCCSSCEEEC-TTSC---EEESCCCTTHHHHHHHHTSCC-
T ss_pred             HHHHHHHHHHHHHHHHhCCCccCEEEE-ECCE---EeeCCCCHHHHHHHHHHHHHhc
Confidence                    1234577899999999998 7786   35688 8999999998876543

>2cq9_A GLRX2 protein, glutaredoxin 2; glutathione-S-transferase, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.14  E-value=6.4e-11  Score=73.28  Aligned_cols=73  Identities=21%  Similarity=0.365  Sum_probs=51.1

Q ss_pred             EEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcc---h----hhhhhCCCcceeEEEEEeCCeEEEEEe---CC-C
Q 032502           51 ANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDEL---V----EFSTSWDIKATPTFFFLKDGQQVDKLV---GA-N  119 (139)
Q Consensus        51 v~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~---~----~~~~~~~v~~~Pt~~~~~~g~~~~~~~---g~-~  119 (139)
                      +.|+++||++|+.+.+.|.++     ++.|..+|++.+   +    ++.+.+++.++|++++  +|+.+..+.   +. .
T Consensus        30 vvf~~~~Cp~C~~~~~~L~~~-----~i~~~~vdid~~~~~~~~~~~l~~~~g~~~vP~l~i--~G~~igg~~~l~~~~~  102 (130)
T 2cq9_A           30 VIFSKTSCSYCTMAKKLFHDM-----NVNYKVVELDLLEYGNQFQDALYKMTGERTVPRIFV--NGTFIGGATDTHRLHK  102 (130)
T ss_dssp             EEEECSSCSHHHHHHHHHHHH-----TCCCEEEETTTSTTHHHHHHHHHHHHSSCCSSEEEE--TTEEEEEHHHHHHHHH
T ss_pred             EEEEcCCChHHHHHHHHHHHc-----CCCcEEEECcCCcCcHHHHHHHHHHhCCCCcCEEEE--CCEEEcChHHHHHHHH
Confidence            349999999999999999887     355566777654   3    3678899999999854  888765421   11 2


Q ss_pred             hHHHHHHHHHH
Q 032502          120 KPELQKKVAAA  130 (139)
Q Consensus       120 ~~~l~~~i~~~  130 (139)
                      ...|.++|...
T Consensus       103 ~~~L~~~L~~~  113 (130)
T 2cq9_A          103 EGKLLPLVHQC  113 (130)
T ss_dssp             HTSSHHHHHHH
T ss_pred             cCcHHHHHHHc
Confidence            33455555553

>2znm_A Thiol:disulfide interchange protein DSBA; thioredoxin fold, DSBA-like, oxidoreductase; 2.30A {Neisseria meningitidis serogroup B} PDB: 3dvx_A

Probab=99.12  E-value=1.8e-10  Score=75.62  Aligned_cols=86  Identities=21%  Similarity=0.360  Sum_probs=64.7

Q ss_pred             CCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCC-cEEEEEeCC-------------------------------------
Q 032502           45 EGKIVIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVD-------------------------------------   86 (139)
Q Consensus        45 ~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~-v~~~~vd~~-------------------------------------   86 (139)
                      .++++|+.||.+|||+|..+.+.+.++.+++++ +.|..+.+.                                     
T Consensus        21 ~~~~~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~~v~~~~~p~~~~~~s~~aa~a~~aa~~~~~~~~~~~~lf~~~~~~~~  100 (195)
T 2znm_A           21 SGKIEVLEFFGYFCVHCHHFDPLLLKLGKALPSDAYLRTEHVVWQPEMLGLARMAAAVNLSGLKYQANPAVFKAVYEQKI  100 (195)
T ss_dssp             SSSEEEEEEECTTSCCTTSSCHHHHHHHHHSCTTEEEEEEECCCSGGGHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSS
T ss_pred             CCCcEEEEEECCCChhHHHHhHHHHHHHHHCCCceEEEEeccccCcccHHHHHHHHHHHHcCcHHHHHHHHHHHHHHhCC
Confidence            468999999999999999999999999999874 666655431                                     


Q ss_pred             -------------------c------------------chhhhhhCCCcceeEEEEEeCCeEEEEEeCC-ChHHHHHHHH
Q 032502           87 -------------------E------------------LVEFSTSWDIKATPTFFFLKDGQQVDKLVGA-NKPELQKKVA  128 (139)
Q Consensus        87 -------------------~------------------~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~i~  128 (139)
                                         .                  +..++..+||.++||+++  ||+.+  ..|. +.+.|.+.|+
T Consensus       101 ~~~~~~~l~~~a~~~~Gld~~~~~~~~~~~~~~~~v~~~~~~a~~~gv~gtPt~vi--ng~~~--~~g~~~~~~l~~~i~  176 (195)
T 2znm_A          101 RLENRSVAGKWALSQKGFDGKKLMRAYDSPEAAAAALKMQKLTEQYRIDSTPTVIV--GGKYR--VIFNNGFDGGVHTIK  176 (195)
T ss_dssp             CTTSHHHHHHHHHTCSSSCHHHHHHHHTSHHHHHHHHHHHHHHHHTTCCSSSEEEE--TTTEE--ECCCSHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHcCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHcCCCCCCeEEE--CCEEE--EcCCCCHHHHHHHHH
Confidence                               0                  011345689999999776  77643  3465 7788888888


Q ss_pred             HHhhcc
Q 032502          129 AAVDSV  134 (139)
Q Consensus       129 ~~~~~~  134 (139)
                      +++...
T Consensus       177 ~~l~~~  182 (195)
T 2znm_A          177 ELVAKV  182 (195)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            887654

>4eo3_A Bacterioferritin comigratory protein/NADH dehydro; thioredoxin-fold, alpha-beta-aplha sandwich fold, antioxidan oxidoreductase, FMN binding; HET: FMN; 1.65A {Thermotoga maritima}

Probab=99.11  E-value=1.6e-10  Score=81.64  Aligned_cols=106  Identities=12%  Similarity=0.090  Sum_probs=76.7

Q ss_pred             eEEeechhHHHHHHHHHhhCCCEEEEEEe-CCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCc-----------------
Q 032502           26 VSLVTTKDIWDQKMSEASKEGKIVIANFS-ATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDE-----------------   87 (139)
Q Consensus        26 ~~~i~~~~~~~~~~~~~~~~~k~vlv~f~-~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~-----------------   87 (139)
                      +|+++..+...+.+.++...||+|||+|| +.||+.|....+.|.+  ..+.++.++.|+.|.                 
T Consensus         4 ~p~F~l~~~~G~~~~Lsd~~Gk~vvl~F~p~~~tp~C~~e~~~~~~--~~~~~~~v~gis~D~~~~~~~f~~~~~l~fp~   81 (322)
T 4eo3_A            4 VKHFELLTDEGKTFTHVDLYGKYTILFFFPKAGTSGSTREAVEFSR--ENFEKAQVVGISRDSVEALKRFKEKNDLKVTL   81 (322)
T ss_dssp             CCCCEEEETTSCEEEGGGTTTSEEEEEECSSTTSHHHHHHHHHHHH--SCCTTEEEEEEESCCHHHHHHHHHHHTCCSEE
T ss_pred             CCCcEEECCCcCEEeHHHhCCCeEEEEEECCCCCCCCHHHHHHHHH--HhhCCCEEEEEeCCCHHHHHHHHHhhCCceEE
Confidence            44555555555566777788999999999 7899999988777754  344578888888863                 


Q ss_pred             ----chhhhhhCCCc----ceeEEEEE-eCCeEEEEEeCC----ChHHHHHHHHHHhhc
Q 032502           88 ----LVEFSTSWDIK----ATPTFFFL-KDGQQVDKLVGA----NKPELQKKVAAAVDS  133 (139)
Q Consensus        88 ----~~~~~~~~~v~----~~Pt~~~~-~~g~~~~~~~g~----~~~~l~~~i~~~~~~  133 (139)
                          +..+++.|||.    .+|+++++ ++|++...+.+.    ..+++.+.|+++...
T Consensus        82 l~D~~~~v~~~ygv~~~~~~~r~tfiId~~G~i~~~~~~v~~~~h~~~~l~~~~~~~~~  140 (322)
T 4eo3_A           82 LSDPEGILHEFFNVLENGKTVRSTFLIDRWGFVRKEWRRVKVEGHVQEVKEALDRLIEE  140 (322)
T ss_dssp             EECTTCHHHHHTTCEETTEECCEEEEECTTSBEEEEEESCCSTTHHHHHHHHHHHHHHH
T ss_pred             EEcCchHHHHhcCCCCCCcCccEEEEECCCCEEEEEEeCCCccccHHHHHHHHhhhchh
Confidence                33567889984    46655444 999999988876    356777777777543

>3ic4_A Glutaredoxin (GRX-1); structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomic oxidoreductase; 1.70A {Archaeoglobus fulgidus}

Probab=99.11  E-value=3.5e-10  Score=65.57  Aligned_cols=69  Identities=14%  Similarity=0.297  Sum_probs=53.2

Q ss_pred             EEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCC-----cc----hhhhhhCCCcceeEEEEEeCCeEEEEEeCCCh
Q 032502           50 IANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVD-----EL----VEFSTSWDIKATPTFFFLKDGQQVDKLVGANK  120 (139)
Q Consensus        50 lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~-----~~----~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~  120 (139)
                      ++.|+++||++|+++...|+++     ++.+..+|++     +.    +++.+.+++.++|++++  +|+.   ..|.+.
T Consensus        14 v~ly~~~~Cp~C~~~~~~L~~~-----gi~~~~~~v~~~~~~~~~~~~~~l~~~~g~~~vP~l~~--~g~~---i~G~~~   83 (92)
T 3ic4_A           14 VLMYGLSTCPHCKRTLEFLKRE-----GVDFEVIWIDKLEGEERKKVIEKVHSISGSYSVPVVVK--GDKH---VLGYNE   83 (92)
T ss_dssp             SEEEECTTCHHHHHHHHHHHHH-----TCCCEEEEGGGCCHHHHHHHHHHHHHHHSSSCSCEEEE--TTEE---EESCCH
T ss_pred             EEEEECCCChHHHHHHHHHHHc-----CCCcEEEEeeeCCccchHHHHHHHHHhcCCCCcCEEEE--CCEE---EeCCCH
Confidence            5668999999999999999887     3445556665     33    56667889999999987  7754   447788


Q ss_pred             HHHHHHHH
Q 032502          121 PELQKKVA  128 (139)
Q Consensus       121 ~~l~~~i~  128 (139)
                      ++|.++|.
T Consensus        84 ~~l~~~l~   91 (92)
T 3ic4_A           84 EKLKELIR   91 (92)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhc
Confidence            88888764

>3l9v_A Putative thiol-disulfide isomerase or thioredoxin; thioredoxin-fold, SRGA, thiol-disulfide oxidoreductase, ISOM oxidoreductase; HET: PE8 P4C P6G; 2.15A {Salmonella enterica subsp} SCOP: c.47.1.0

Probab=99.11  E-value=1.8e-10  Score=75.57  Aligned_cols=41  Identities=15%  Similarity=0.379  Sum_probs=34.8

Q ss_pred             CCEEEEEEeCCCChhhhhhhHhH---HHHHHhCC-CcEEEEEeCC
Q 032502           46 GKIVIANFSATWCGPCRMIAPFF---SELSEKYP-SLMFLLVDVD   86 (139)
Q Consensus        46 ~k~vlv~f~~~~C~~C~~~~~~l---~~~~~~~~-~v~~~~vd~~   86 (139)
                      ++++||.||+.|||+|+.+.+.+   .++.+.++ +++|+.++..
T Consensus        14 ~~~~vvef~d~~Cp~C~~~~~~~~~~~~~~~~~~~~v~~~~~~~~   58 (189)
T 3l9v_A           14 DAPAVVEFFSFYCPPCYAFSQTMGVDQAIRHVLPQGSRMVKYHVS   58 (189)
T ss_dssp             TCCSEEEEECTTCHHHHHHHHTSCHHHHHHTTCCTTCCEEEEECS
T ss_pred             CCCEEEEEECCCChhHHHHhHhccchHHHHHhCCCCCEEEEEech
Confidence            46889999999999999999987   68888887 4888777763

>3feu_A Putative lipoprotein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.76A {Vibrio fischeri} SCOP: c.47.1.0

Probab=99.10  E-value=1.7e-10  Score=75.43  Aligned_cols=85  Identities=18%  Similarity=0.289  Sum_probs=65.7

Q ss_pred             CCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCc-------------------------------------c
Q 032502           46 GKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDE-------------------------------------L   88 (139)
Q Consensus        46 ~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~-------------------------------------~   88 (139)
                      ++++||.|+..|||+|+.+.|.+.++.+.+ ++.|..+.+.-                                     .
T Consensus        22 ~~~~vvef~d~~Cp~C~~~~~~~~~~~~~~-~v~~~~~p~~~~~~~~~aa~a~~Aa~~q~g~~~~~~~~~~lf~a~~~~~  100 (185)
T 3feu_A           22 GMAPVTEVFALSCGHCRNMENFLPVISQEA-GTDIGKMHITFNQSAHIASMFYYAAEMQVDGAPDHAFMEDLFAATQMGE  100 (185)
T ss_dssp             CCCSEEEEECTTCHHHHHHGGGHHHHHHHH-TSCCEEEECCSSSHHHHHHHHHHHHHTTSSSSCCHHHHHHHHHHHTCCT
T ss_pred             CCCEEEEEECCCChhHHHhhHHHHHHHHHh-CCeEEEEeccCCccchHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhc
Confidence            578999999999999999999999999988 76665555410                                     0


Q ss_pred             -----------------------------------------hhhhhhCCCcceeEEEEEeCCeEEEEEeCC-ChHHHHHH
Q 032502           89 -----------------------------------------VEFSTSWDIKATPTFFFLKDGQQVDKLVGA-NKPELQKK  126 (139)
Q Consensus        89 -----------------------------------------~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~  126 (139)
                                                               ...+.++||.++|++++  ||+.+-...|. +.+.+.+.
T Consensus       101 ~~~~~~~~~~L~~~a~~~Gl~d~~~~~~~~~~~~~~~v~~~~~~a~~~gv~GtPtfvv--ng~~~v~~~Ga~~~e~~~~~  178 (185)
T 3feu_A          101 GTTLTEQQEAYSKAFTSRGLVSPYDFNEEQRDTLIKKVDNAKMLSEKSGISSVPTFVV--NGKYNVLIGGHDDPKQIADT  178 (185)
T ss_dssp             TSCHHHHHHHHHHHHHTTTCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCCSSSEEEE--TTTEEECGGGCSSHHHHHHH
T ss_pred             cCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCEEEE--CCEEEEecCCCCCHHHHHHH
Confidence                                                     00133568899999998  88865444677 89999999


Q ss_pred             HHHHhhc
Q 032502          127 VAAAVDS  133 (139)
Q Consensus       127 i~~~~~~  133 (139)
                      |+.++.+
T Consensus       179 i~~ll~k  185 (185)
T 3feu_A          179 IRYLLEK  185 (185)
T ss_dssp             HHHHHTC
T ss_pred             HHHHHhC
Confidence            9988753

>3c1r_A Glutaredoxin-1; oxidized form, oxidoreductase, cytoplasm, electron transport, redox-active center, transport; HET: MES; 2.00A {Saccharomyces cerevisiae} PDB: 3c1s_A* 2jac_A*

Probab=99.06  E-value=2e-10  Score=69.89  Aligned_cols=60  Identities=18%  Similarity=0.438  Sum_probs=45.6

Q ss_pred             EEEEeCCCChhhhhh-hHhHHHHHHhCCCcEEEEEeCCcch-------hhhhhCCCcceeEEEEEeCCeEEE
Q 032502           50 IANFSATWCGPCRMI-APFFSELSEKYPSLMFLLVDVDELV-------EFSTSWDIKATPTFFFLKDGQQVD  113 (139)
Q Consensus        50 lv~f~~~~C~~C~~~-~~~l~~~~~~~~~v~~~~vd~~~~~-------~~~~~~~v~~~Pt~~~~~~g~~~~  113 (139)
                      |+.|+++||++|+.+ .+.|.++..  ..+.|..+|++.++       ++.+.+|+.++|+++  .+|+.+.
T Consensus        27 Vvvf~~~~Cp~C~~alk~~L~~~~~--~~i~~~~vdid~~~~~~~~~~~l~~~~g~~tvP~vf--i~g~~ig   94 (118)
T 3c1r_A           27 IFVASKTYCPYCHAALNTLFEKLKV--PRSKVLVLQLNDMKEGADIQAALYEINGQRTVPNIY--INGKHIG   94 (118)
T ss_dssp             EEEEECSSCHHHHHHHHHHHTTSCC--CGGGEEEEEGGGSTTHHHHHHHHHHHHSCCSSCEEE--ETTEEEE
T ss_pred             EEEEEcCCCcCHHHHHHHHHHHcCC--CCCCeEEEECccCCChHHHHHHHHHHhCCCCcCEEE--ECCEEEE
Confidence            556999999999999 777765421  13788888888654       577889999999874  4887654

>3sbc_A Peroxiredoxin TSA1; alpha-beta fold, peroxidase, cytosol, oxidoreductase; 2.80A {Saccharomyces cerevisiae}

Probab=99.06  E-value=3.2e-10  Score=75.64  Aligned_cols=113  Identities=19%  Similarity=0.156  Sum_probs=83.1

Q ss_pred             cccCCCceEEeech---hHHHHHHHHHhhCCCEEEEEEe-CCCChhhhhhhHhHHHHHHhCC--CcEEEEEeCCc-----
Q 032502           19 VEFAGGNVSLVTTK---DIWDQKMSEASKEGKIVIANFS-ATWCGPCRMIAPFFSELSEKYP--SLMFLLVDVDE-----   87 (139)
Q Consensus        19 ~~~~~~~~~~i~~~---~~~~~~~~~~~~~~k~vlv~f~-~~~C~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~-----   87 (139)
                      ....|..+|++...   +.....+.+....+|++||+|| +.||+.|......+++.+.++.  ++.++.|..|.     
T Consensus        22 ~~~VG~~APdF~l~a~~d~~~~~vsLsd~~GK~vVL~FyP~d~TpvCt~E~~~f~~~~~~f~~~g~~vigiS~Ds~~sh~  101 (216)
T 3sbc_A           22 VAQVQKQAPTFKKTAVVDGVFDEVSLDKYKGKYVVLAFIPLAFTFVSPTEIIAFSEAAKKFEEQGAQVLFASTDSEYSLL  101 (216)
T ss_dssp             CCCTTSBCCCCCEEEEETTEEEEECGGGGTTSEEEEEECSCTTSSHHHHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHH
T ss_pred             hhhcCCcCCCCCCcceECCCCcEEehHHhCCCeEEEEEEcCCCCCcCchhhhHHHHhHHhhccCCceEEEeecCchhhHH
Confidence            34567777777632   2222346667788999999999 9999999999999999998885  68999998863     


Q ss_pred             -----------------------chhhhhhCCCc----cee---EEEEEeCCeEEEEEe-----CCChHHHHHHHHHHh
Q 032502           88 -----------------------LVEFSTSWDIK----ATP---TFFFLKDGQQVDKLV-----GANKPELQKKVAAAV  131 (139)
Q Consensus        88 -----------------------~~~~~~~~~v~----~~P---t~~~~~~g~~~~~~~-----g~~~~~l~~~i~~~~  131 (139)
                                             +..+++.||+.    +++   +|++.++|++.....     |.+.+++.+.|+.+.
T Consensus       102 aw~~~~~~~~~~~~l~fpllsD~~~~vak~YGv~~~~~g~~~R~tFiID~~G~Ir~~~v~~~~~grn~dEiLr~l~AlQ  180 (216)
T 3sbc_A          102 AWTNIPRKEGGLGPINIPLLADTNHSLSRDYGVLIEEEGVALRGLFIIDPKGVIRHITINDLPVGRNVDEALRLVEAFQ  180 (216)
T ss_dssp             HHHTSCGGGTCCCSCSSCEEECTTSHHHHHHTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCccCcccceEeCCCCHHHHHcCCeeccCCceeeEEEEECCCCeEEEEEEcCCCCCCCHHHHHHHHHHhh
Confidence                                   23467778873    233   566669999987653     337788888887764

>2rem_A Disulfide oxidoreductase; disulfide oxidoreductase, DSBA, thioredoxin fold, redox- active center; 1.90A {Xylella fastidiosa}

Probab=99.05  E-value=1.1e-09  Score=71.62  Aligned_cols=86  Identities=16%  Similarity=0.221  Sum_probs=64.8

Q ss_pred             CCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCC-cEEEEEeCC-------------------------------------
Q 032502           45 EGKIVIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVD-------------------------------------   86 (139)
Q Consensus        45 ~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~-v~~~~vd~~-------------------------------------   86 (139)
                      .++++|+.||..+||+|..+.+.+.++.+++++ +.|..+.+.                                     
T Consensus        24 ~a~v~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~~v~~~~~p~~~~~~s~~a~~a~~~a~~~~~~~~~~~~lf~~~~~~~~  103 (193)
T 2rem_A           24 AGKIEVVEIFGYTCPHCAHFDSKLQAWGARQAKDVRFTLVPAVFGGVWDPFARAYLAADVLGVAKRSHTAMFEAIHEKGS  103 (193)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHTSCTTEEEEEEECCCSTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCC
T ss_pred             CCCeEEEEEECCCChhHhhhhHHHHHHHHhcCCceEEEEeCcccCCCcHHHHHHHHHHHHcCcHHHHHHHHHHHHHHhcc
Confidence            357889999999999999999999999999874 666655441                                     


Q ss_pred             ------c---------------------------------chhhhhhCCCcceeEEEEEeCCeEEEEEeCCChHHHHHHH
Q 032502           87 ------E---------------------------------LVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKV  127 (139)
Q Consensus        87 ------~---------------------------------~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~l~~~i  127 (139)
                            .                                 +..++..+||.++||+++  ||+.+.  .|.+.+.|.+.|
T Consensus       104 ~~~~~~~~~~l~~~a~~~Gld~~~~~~~~~~~~~~~~v~~~~~~a~~~gv~gtPt~vi--ng~~~~--~g~~~~~l~~~i  179 (193)
T 2rem_A          104 VPIQNVGPDELAVFYAGYGVQPDRFVATFNGPEVEKRFQAARAYALKVRPVGTPTIVV--NGRYMV--TGHDFEDTLRIT  179 (193)
T ss_dssp             SCSTTCCHHHHHHHHHTTTCCHHHHHHHHTSHHHHHHHHHHHHHHHHHCCSSSSEEEE--TTTEEE--CCSSHHHHHHHH
T ss_pred             cCcCCCCHHHHHHHHHHcCCCHHHHHHHHhChHHHHHHHHHHHHHHHhCCCCCCeEEE--CCEEEe--cCCCHHHHHHHH
Confidence                  0                                 011245679999999776  776542  344888999999


Q ss_pred             HHHhhcc
Q 032502          128 AAAVDSV  134 (139)
Q Consensus       128 ~~~~~~~  134 (139)
                      ++++.+.
T Consensus       180 ~~~~~~~  186 (193)
T 2rem_A          180 DYLVSRE  186 (193)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9888764

>3rhb_A ATGRXC5, glutaredoxin-C5, chloroplastic; thioredoxin fold, thiol-disulfide oxidoreductase, glutaredox oxidoreductase; HET: GSH; 1.20A {Arabidopsis thaliana} PDB: 3rhc_A* 3fz9_A* 3fza_A*

Probab=99.03  E-value=4.9e-10  Score=67.48  Aligned_cols=61  Identities=25%  Similarity=0.571  Sum_probs=44.2

Q ss_pred             hCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcc----hh----hhhhCCCcceeEEEEEeCCeEEE
Q 032502           44 KEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDEL----VE----FSTSWDIKATPTFFFLKDGQQVD  113 (139)
Q Consensus        44 ~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~----~~----~~~~~~v~~~Pt~~~~~~g~~~~  113 (139)
                      .+++  |+.|+++||++|+.+.+.|.++     ++.|..+|++..    ++    +.+.+|...+|++++  +|+.+.
T Consensus        17 ~~~~--v~vy~~~~Cp~C~~~~~~L~~~-----~i~~~~~di~~~~~~~~~~~~~l~~~~g~~tvP~ifi--~g~~ig   85 (113)
T 3rhb_A           17 TENT--VVIYSKTWCSYCTEVKTLFKRL-----GVQPLVVELDQLGPQGPQLQKVLERLTGQHTVPNVFV--CGKHIG   85 (113)
T ss_dssp             HHSS--EEEEECTTCHHHHHHHHHHHHT-----TCCCEEEEGGGSTTHHHHHHHHHHHHHSCCSSCEEEE--TTEEEE
T ss_pred             hcCC--EEEEECCCChhHHHHHHHHHHc-----CCCCeEEEeecCCCChHHHHHHHHHHhCCCCcCEEEE--CCEEEc
Confidence            3444  5669999999999999999875     455566677652    22    445569999999854  887655

>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} SCOP: c.47.1.0

Probab=99.02  E-value=1.8e-09  Score=63.67  Aligned_cols=61  Identities=16%  Similarity=0.203  Sum_probs=46.6

Q ss_pred             CCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhhhh----hC-CCcceeEEEEEeCCeEEE
Q 032502           46 GKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFST----SW-DIKATPTFFFLKDGQQVD  113 (139)
Q Consensus        46 ~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~----~~-~v~~~Pt~~~~~~g~~~~  113 (139)
                      ++.-|+.|+++||++|+++...|.++     ++.|..+|++.+++...    .. |..++|++++  +|+.+.
T Consensus        14 ~~~~v~vy~~~~Cp~C~~ak~~L~~~-----~i~y~~idI~~~~~~~~~l~~~~~g~~~vP~ifi--~g~~ig   79 (99)
T 3qmx_A           14 VSAKIEIYTWSTCPFCMRALALLKRK-----GVEFQEYCIDGDNEAREAMAARANGKRSLPQIFI--DDQHIG   79 (99)
T ss_dssp             CCCCEEEEECTTCHHHHHHHHHHHHH-----TCCCEEEECTTCHHHHHHHHHHTTTCCCSCEEEE--TTEEEE
T ss_pred             CCCCEEEEEcCCChhHHHHHHHHHHC-----CCCCEEEEcCCCHHHHHHHHHHhCCCCCCCEEEE--CCEEEe
Confidence            34446779999999999999999877     56677888887765444    34 8999998854  887554

>3tue_A Tryparedoxin peroxidase; thioredoxin fold, peroxiredoxin, oxidoreductase; 3.00A {Leishmania major} PDB: 1e2y_A

Probab=99.02  E-value=2.5e-10  Score=76.37  Aligned_cols=112  Identities=17%  Similarity=0.160  Sum_probs=84.0

Q ss_pred             ccCCCceEEee----chhHHHHHHHHHhhCCCEEEEEEe-CCCChhhhhhhHhHHHHHHhCC--CcEEEEEeCCc-----
Q 032502           20 EFAGGNVSLVT----TKDIWDQKMSEASKEGKIVIANFS-ATWCGPCRMIAPFFSELSEKYP--SLMFLLVDVDE-----   87 (139)
Q Consensus        20 ~~~~~~~~~i~----~~~~~~~~~~~~~~~~k~vlv~f~-~~~C~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~-----   87 (139)
                      ..+|..+|++.    ..+.-...+.+....+|.+||+|| +.||+.|......+.+.+.+|.  ++.++.|..|.     
T Consensus        26 ~~vG~~APdF~~~a~l~d~~g~~vsLsd~~GK~vVL~FyP~d~TpvCt~E~~~f~~~~~eF~~~g~~vigiS~Ds~~sh~  105 (219)
T 3tue_A           26 AKINSPAPSFEEVALMPNGSFKKISLSSYKGKWVVLFFYPLDFTFVCPTEVIAFSDSVSRFNELNCEVLACSIDSEYAHL  105 (219)
T ss_dssp             CCTTSBCCCCEEEEECTTSCEEEEEGGGGTTSEEEEEECSCTTCSSCCHHHHHHHTTHHHHHTTTEEEEEEESSCHHHHH
T ss_pred             cccCCcCCCCcccccccCCCCcEEehHHhCCCEEEEEEecccCCCCCchhHhhHHHHHhhhccCCcEEEEeeCCchhhHH
Confidence            45777788886    223333456777788999999999 9999999999999999988885  58889988863     


Q ss_pred             -----------------------chhhhhhCCCc----cee---EEEEEeCCeEEEEEe-----CCChHHHHHHHHHHh
Q 032502           88 -----------------------LVEFSTSWDIK----ATP---TFFFLKDGQQVDKLV-----GANKPELQKKVAAAV  131 (139)
Q Consensus        88 -----------------------~~~~~~~~~v~----~~P---t~~~~~~g~~~~~~~-----g~~~~~l~~~i~~~~  131 (139)
                                             +.++++.||+.    +++   +|++.++|++...+.     |.+.+++.+.|+.+.
T Consensus       106 ~w~~~~~~~~~~~~l~fpllsD~~~~va~~yGv~~~~~g~~~R~tFiIDp~g~Ir~~~~~~~~~gr~~~EvLr~l~aLQ  184 (219)
T 3tue_A          106 QWTLQDRKKGGLGTMAIPILADKTKNIARSYGVLEESQGVAYRGLFIIDPHGMLRQITVNDMPVGRSVEEVLRLLEAFQ  184 (219)
T ss_dssp             HHHHSCGGGTCCCSCSSCEEECTTSHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHHH
T ss_pred             HHhhhhHHhcCccccccccccCcccHHHHHcCCcccCCCeeEEEEEEECCCCeEEEEEEecCCCCCCHHHHHHHHHHhh
Confidence                                   23467788874    344   677779999988763     236788888877764

>2ht9_A Glutaredoxin-2; thioredoxin fold, iron-sulfur cluster, 2Fe2S, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: GSH; 1.90A {Homo sapiens} PDB: 2fls_A*

Probab=99.01  E-value=1.1e-09  Score=69.05  Aligned_cols=56  Identities=23%  Similarity=0.477  Sum_probs=43.3

Q ss_pred             EEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcc---h----hhhhhCCCcceeEEEEEeCCeEEE
Q 032502           51 ANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDEL---V----EFSTSWDIKATPTFFFLKDGQQVD  113 (139)
Q Consensus        51 v~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~---~----~~~~~~~v~~~Pt~~~~~~g~~~~  113 (139)
                      +.|+++||++|+.+.+.|.++     ++.|..+|++.+   +    ++.+.+|+.++|++++  +|+.+.
T Consensus        52 vvf~~~~Cp~C~~~k~~L~~~-----~i~~~~vdId~~~~~~~~~~~L~~~~g~~tvP~ifi--~G~~ig  114 (146)
T 2ht9_A           52 VIFSKTSCSYCTMAKKLFHDM-----NVNYKVVELDLLEYGNQFQDALYKMTGERTVPRIFV--NGTFIG  114 (146)
T ss_dssp             EEEECTTCHHHHHHHHHHHHH-----TCCCEEEEGGGCTTHHHHHHHHHHHHSCCCSCEEEE--TTEEEE
T ss_pred             EEEECCCChhHHHHHHHHHHc-----CCCeEEEECccCcCCHHHHHHHHHHhCCCCcCeEEE--CCEEEe
Confidence            449999999999999999887     345566676654   3    3678899999999854  887654

>2ec4_A FAS-associated factor 1; UAS domain, protein FAF1, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.01  E-value=3.6e-09  Score=68.71  Aligned_cols=102  Identities=11%  Similarity=0.159  Sum_probs=79.1

Q ss_pred             hhHHHHHHHHH----hhCCCEEEEEEeCCCChhhhhhhH------hHHHHHHhCCCcEEEEEeCCcch------------
Q 032502           32 KDIWDQKMSEA----SKEGKIVIANFSATWCGPCRMIAP------FFSELSEKYPSLMFLLVDVDELV------------   89 (139)
Q Consensus        32 ~~~~~~~~~~~----~~~~k~vlv~f~~~~C~~C~~~~~------~l~~~~~~~~~v~~~~vd~~~~~------------   89 (139)
                      ...+++.+..+    ..+.|+++|+++++||..|..+..      .+.++.+.  ++.+...|.+...            
T Consensus        37 ~gs~~~Al~~A~~~~k~e~K~LlVyLhs~~~~~~~~f~~~~L~~~~V~~~l~~--nfV~w~~dv~~~e~~~~~~~~~~~~  114 (178)
T 2ec4_A           37 IGSLEAAFQEAFYVKARDRKLLAIYLHHDESVLTNVFCSQMLCAESIVSYLSQ--NFITWAWDLTKDSNRARFLTMCNRH  114 (178)
T ss_dssp             CSCHHHHHHTTTSSCTTTCCEEEEEEECSSCSHHHHHHHHTTTCHHHHHHHHH--TEEEEEEECCSHHHHHHHHHHHHHH
T ss_pred             eCCHHHHHHHHHhhhhhhCcEEEEEEeCCCCccHHHHHHHhcCCHHHHHHHHc--CEEEEEEeCCCchhhhhhhhhhhhh
Confidence            55677788887    788999999999999999998863      33444443  6888888988654            


Q ss_pred             ---hhh---hhCCCcceeEEEEE-eC---CeEEEEEeCC-ChHHHHHHHHHHhhccC
Q 032502           90 ---EFS---TSWDIKATPTFFFL-KD---GQQVDKLVGA-NKPELQKKVAAAVDSVV  135 (139)
Q Consensus        90 ---~~~---~~~~v~~~Pt~~~~-~~---g~~~~~~~g~-~~~~l~~~i~~~~~~~~  135 (139)
                         .++   +.|++.++|+++++ ..   .+++.++.|. +.++|...|.+.+.+..
T Consensus       115 ~g~~~a~~~~~~~~~~~P~l~ii~~~~~~~~vl~~~~G~~~~~~ll~~L~~~~e~~~  171 (178)
T 2ec4_A          115 FGSVVAQTIRTQKTDQFPLFLIIMGKRSSNEVLNVIQGNTTVDELMMRLMAAMEIFT  171 (178)
T ss_dssp             TCHHHHHHHHHSCSTTCSEEEEECCCSSCCCEEEEECSCCCHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHhhcCCCCCCeEEEEEcCCCceEEEEEEeCCCCHHHHHHHHHHHHHHhh
Confidence               233   34899999999999 33   3678899999 99999999988877654

>2klx_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Bartonella henselae}

Probab=99.00  E-value=1.5e-09  Score=62.51  Aligned_cols=56  Identities=14%  Similarity=0.258  Sum_probs=46.0

Q ss_pred             EEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCC--cchhhhhhC-CCcceeEEEEEeCCeEE
Q 032502           50 IANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVD--ELVEFSTSW-DIKATPTFFFLKDGQQV  112 (139)
Q Consensus        50 lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~--~~~~~~~~~-~v~~~Pt~~~~~~g~~~  112 (139)
                      ++.|+++||++|+.+.+.|++.     ++.|..+|++  ...++.+.+ ++.++|++++  +|+.+
T Consensus         8 v~~y~~~~C~~C~~~~~~L~~~-----~i~~~~vdv~~~~~~~l~~~~~~~~~vP~l~~--~g~~i   66 (89)
T 2klx_A            8 IILYTRPNCPYCKRARDLLDKK-----GVKYTDIDASTSLRQEMVQRANGRNTFPQIFI--GDYHV   66 (89)
T ss_dssp             EEEESCSCCTTTHHHHHHHHHH-----TCCEEEECSCHHHHHHHHHHHHSSCCSCEEEE--TTEEC
T ss_pred             EEEEECCCChhHHHHHHHHHHc-----CCCcEEEECCHHHHHHHHHHhCCCCCcCEEEE--CCEEE
Confidence            6679999999999999999876     5677888888  556778888 9999999854  77654

>3l9s_A Thiol:disulfide interchange protein; thioredoxin-fold, DSBA, thiol-disulfide oxidoreductase, DISU bond, redox-active center; 1.58A {Salmonella enterica subsp} SCOP: c.47.1.13 PDB: 1a23_A 1a24_A 1a2j_A 1a2l_A 1a2m_A 1dsb_A 1fvk_A 3dks_A 1bq7_A 1fvj_A 1acv_A 1u3a_A* 1ti1_A* 2hi7_A* 2leg_A* 2zup_A* 3e9j_B* 1ac1_A 2b6m_A 2b3s_A

Probab=98.99  E-value=1.1e-09  Score=71.94  Aligned_cols=40  Identities=18%  Similarity=0.399  Sum_probs=34.1

Q ss_pred             CCEEEEEEeCCCChhhhhhhHhH---HHHHHhCC-CcEEEEEeC
Q 032502           46 GKIVIANFSATWCGPCRMIAPFF---SELSEKYP-SLMFLLVDV   85 (139)
Q Consensus        46 ~k~vlv~f~~~~C~~C~~~~~~l---~~~~~~~~-~v~~~~vd~   85 (139)
                      ++++|+.|+..+||+|..+.+.+   .++.+.++ +++|+.++.
T Consensus        21 ~~~~vvef~d~~Cp~C~~~~~~l~~~~~l~~~~~~~v~~~~~~~   64 (191)
T 3l9s_A           21 GEPQVLEFFSFYCPHCYQFEEVLHVSDNVKKKLPEGTKMTKYHV   64 (191)
T ss_dssp             SSSCEEEEECTTCHHHHHHHHTSCHHHHHHHHSCTTCCEEEEEC
T ss_pred             CCCeEEEEECCCChhHHHhChhccchHHHHHhCCCCcEEEEEec
Confidence            47889999999999999999987   69999998 477766665

>3nzn_A Glutaredoxin; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics, rossmann fold; 1.10A {Methanosarcina mazei}

Probab=98.99  E-value=3.2e-09  Score=62.89  Aligned_cols=69  Identities=20%  Similarity=0.322  Sum_probs=49.2

Q ss_pred             EEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcc-----hhh----hhhCCCcceeEEEEEeCC-eEEEEEeCC
Q 032502           49 VIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDEL-----VEF----STSWDIKATPTFFFLKDG-QQVDKLVGA  118 (139)
Q Consensus        49 vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~-----~~~----~~~~~v~~~Pt~~~~~~g-~~~~~~~g~  118 (139)
                      .++.|+++||++|+.+.+.|.+.     ++.+-.+|++..     .++    .+.++..++|++++  +| +.   +.|.
T Consensus        23 ~v~ly~~~~Cp~C~~ak~~L~~~-----~i~y~~vdI~~~~~~~~~~~~~~l~~~~g~~~vP~l~i--~~~~~---igg~   92 (103)
T 3nzn_A           23 KVIMYGLSTCVWCKKTKKLLTDL-----GVDFDYVYVDRLEGKEEEEAVEEVRRFNPSVSFPTTII--NDEKA---IVGF   92 (103)
T ss_dssp             CEEEEECSSCHHHHHHHHHHHHH-----TBCEEEEEGGGCCHHHHHHHHHHHHHHCTTCCSCEEEE--TTTEE---EESC
T ss_pred             eEEEEcCCCCchHHHHHHHHHHc-----CCCcEEEEeeccCcccHHHHHHHHHHhCCCCccCEEEE--CCCEE---EEcC
Confidence            36669999999999999999877     455555666541     222    23468999999877  44 43   3477


Q ss_pred             ChHHHHHHH
Q 032502          119 NKPELQKKV  127 (139)
Q Consensus       119 ~~~~l~~~i  127 (139)
                      +.++|.++|
T Consensus        93 ~~~~l~~~L  101 (103)
T 3nzn_A           93 KEKEIRESL  101 (103)
T ss_dssp             CHHHHHHHT
T ss_pred             CHHHHHHHh
Confidence            888887765

>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}

Probab=98.98  E-value=3.7e-09  Score=62.85  Aligned_cols=66  Identities=17%  Similarity=0.305  Sum_probs=48.0

Q ss_pred             HHHHhhCCCEEEEEEeC-----CCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchh----hhhhCCCcceeEEEEEeCC
Q 032502           39 MSEASKEGKIVIANFSA-----TWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVE----FSTSWDIKATPTFFFLKDG  109 (139)
Q Consensus        39 ~~~~~~~~k~vlv~f~~-----~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~----~~~~~~v~~~Pt~~~~~~g  109 (139)
                      +......++ ++| |++     +||++|+.+.+.|.++     ++.|..+|++.++.    +...+|..++|++++  +|
T Consensus        10 ~~~~i~~~~-vvv-f~~g~~~~~~C~~C~~~~~~L~~~-----~i~~~~vdi~~~~~~~~~l~~~~g~~~vP~v~i--~g   80 (105)
T 2yan_A           10 LKVLTNKAS-VML-FMKGNKQEAKCGFSKQILEILNST-----GVEYETFDILEDEEVRQGLKAYSNWPTYPQLYV--KG   80 (105)
T ss_dssp             HHHHHTSSS-EEE-EESBCSSSBCTTHHHHHHHHHHHH-----TCCCEEEEGGGCHHHHHHHHHHHTCCSSCEEEE--TT
T ss_pred             HHHHhccCC-EEE-EEecCCCCCCCccHHHHHHHHHHC-----CCCeEEEECCCCHHHHHHHHHHHCCCCCCeEEE--CC
Confidence            333333444 444 666     9999999999999887     57788889987765    445578999999854  88


Q ss_pred             eEEE
Q 032502          110 QQVD  113 (139)
Q Consensus       110 ~~~~  113 (139)
                      +.+.
T Consensus        81 ~~ig   84 (105)
T 2yan_A           81 ELVG   84 (105)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            7654

>4f9z_D Endoplasmic reticulum resident protein 27; thioredoxin fold, ER foldase, ERP57, binding protein; HET: PE3 PE4; 2.20A {Homo sapiens} PDB: 2l4c_A

Probab=98.93  E-value=7.8e-08  Score=64.55  Aligned_cols=87  Identities=11%  Similarity=0.161  Sum_probs=69.6

Q ss_pred             CEEEEEEeCCCChhhhhhhHhHHHHHHhCCC-cEEEEEeCCc--chhhhhhCCCc--ceeEEEEEeC-CeEEEEEe-CC-
Q 032502           47 KIVIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVDE--LVEFSTSWDIK--ATPTFFFLKD-GQQVDKLV-GA-  118 (139)
Q Consensus        47 k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~-v~~~~vd~~~--~~~~~~~~~v~--~~Pt~~~~~~-g~~~~~~~-g~-  118 (139)
                      +.+++.|..+||..|....+.++++++++.+ +.|+.+|.+.  .....+.||+.  .+|+++++.. +.....+. +. 
T Consensus       132 ~~~~l~f~~~~~~~~~~~~~~~~~vAk~~k~~i~F~~vd~~~~~~~~~l~~fgl~~~~~P~~~i~~~~~~~ky~~~~~~~  211 (227)
T 4f9z_D          132 QIHLLLIMNKASPEYEENMHRYQKAAKLFQGKILFILVDSGMKENGKVISFFKLKESQLPALAIYQTLDDEWDTLPTAEV  211 (227)
T ss_dssp             CEEEEEEECTTSTTHHHHHHHHHHHHHHTTTTCEEEEEETTSGGGHHHHHHTTCCGGGCSEEEEEESSSCCEEEETTCCC
T ss_pred             ceEEEEEEcCCcchHHHHHHHHHHHHHHhhCCEEEEEeCCccHhHHHHHHHcCCCcccCCEEEEEECCCCccccCCcCCC
Confidence            4556667789999999999999999999985 9999999974  66778999998  8999999953 33233333 44 


Q ss_pred             ChHHHHHHHHHHhhc
Q 032502          119 NKPELQKKVAAAVDS  133 (139)
Q Consensus       119 ~~~~l~~~i~~~~~~  133 (139)
                      +.+.|.+|++.++..
T Consensus       212 t~~~i~~Fv~~~~~G  226 (227)
T 4f9z_D          212 SVEHVQNFCDGFLSG  226 (227)
T ss_dssp             CHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHhCC
Confidence            899999999998753

>3msz_A Glutaredoxin 1; alpha-beta sandwich, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: GSH; 2.05A {Francisella tularensis subsp} PDB: 3lgc_A*

Probab=98.92  E-value=5.1e-09  Score=59.96  Aligned_cols=74  Identities=14%  Similarity=0.235  Sum_probs=53.1

Q ss_pred             EEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcc----hhhhhhCCC-----cceeEEEEEeCCeEEEEEeCCC
Q 032502           49 VIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDEL----VEFSTSWDI-----KATPTFFFLKDGQQVDKLVGAN  119 (139)
Q Consensus        49 vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~----~~~~~~~~v-----~~~Pt~~~~~~g~~~~~~~g~~  119 (139)
                      .++.|+++||++|+.+...|.+..   -.+.++.+|.+.+    .++.+.+|.     .++|++++  +|+.+.     .
T Consensus         5 ~v~ly~~~~Cp~C~~~~~~L~~~~---i~~~~~~vd~~~~~~~~~el~~~~g~~~~~~~~vP~i~i--~g~~i~-----g   74 (89)
T 3msz_A            5 KVKIYTRNGCPYCVWAKQWFEENN---IAFDETIIDDYAQRSKFYDEMNQSGKVIFPISTVPQIFI--DDEHIG-----G   74 (89)
T ss_dssp             CEEEEECTTCHHHHHHHHHHHHTT---CCCEEEECCSHHHHHHHHHHHHTTTCCSSCCCSSCEEEE--TTEEEE-----S
T ss_pred             EEEEEEcCCChhHHHHHHHHHHcC---CCceEEEeecCCChhHHHHHHHHhCCCCCCCCccCEEEE--CCEEEe-----C
Confidence            367789999999999999887652   1355555566544    457777888     99999966  887554     4


Q ss_pred             hHHHHHHHHHHhh
Q 032502          120 KPELQKKVAAAVD  132 (139)
Q Consensus       120 ~~~l~~~i~~~~~  132 (139)
                      .+++.++++++++
T Consensus        75 ~~~i~~~~~~~~~   87 (89)
T 3msz_A           75 FTELKANADKILN   87 (89)
T ss_dssp             HHHHHHTHHHHTT
T ss_pred             hHHHHHHHHHHhc
Confidence            5677777777654

>1z6m_A Conserved hypothetical protein; structural genomics, MCSG,, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.30A {Enterococcus faecalis} SCOP: c.47.1.13

Probab=98.92  E-value=8.4e-09  Score=66.44  Aligned_cols=41  Identities=15%  Similarity=0.171  Sum_probs=33.9

Q ss_pred             CCCEEEEEEeCCCChhhhhhhHhHHHHHHhC--C-CcEEEEEeC
Q 032502           45 EGKIVIANFSATWCGPCRMIAPFFSELSEKY--P-SLMFLLVDV   85 (139)
Q Consensus        45 ~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~--~-~v~~~~vd~   85 (139)
                      ..+++|+.|+..+||+|+.+.+.+.++.+++  + ++.++..+.
T Consensus        26 ~a~v~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~~~v~~~~~~~   69 (175)
T 1z6m_A           26 NAPVKMIEFINVRCPYCRKWFEESEELLAQSVKSGKVERIIKLF   69 (175)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHHHHHHHHHHHHHTTSEEEEEEEC
T ss_pred             CCCeEEEEEECCCCcchHHHHHHHHHHHHHHhhCCcEEEEEEeC
Confidence            4678899999999999999999998888887  4 477766544

>1fov_A Glutaredoxin 3, GRX3; active site disulfide, CIS Pro 53, electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 3grx_A*

Probab=98.90  E-value=1e-08  Score=57.81  Aligned_cols=56  Identities=18%  Similarity=0.354  Sum_probs=43.5

Q ss_pred             EEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcch----hhhhhCCCcceeEEEEEeCCeEE
Q 032502           50 IANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELV----EFSTSWDIKATPTFFFLKDGQQV  112 (139)
Q Consensus        50 lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~----~~~~~~~v~~~Pt~~~~~~g~~~  112 (139)
                      ++.|+++||++|+.+.+.|.+.     ++.|..+|++.++    ++.+.+++.++|++++  +|+.+
T Consensus         3 i~~y~~~~C~~C~~~~~~l~~~-----~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~l~~--~g~~i   62 (82)
T 1fov_A            3 VEIYTKETCPYCHRAKALLSSK-----GVSFQELPIDGNAAKREEMIKRSGRTTVPQIFI--DAQHI   62 (82)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHH-----TCCCEEEECTTCSHHHHHHHHHHSSCCSCEEEE--TTEEE
T ss_pred             EEEEECCCChhHHHHHHHHHHC-----CCCcEEEECCCCHHHHHHHHHHhCCCCcCEEEE--CCEEE
Confidence            5678999999999999999875     5666677777643    3456789999999854  88754

>2l4c_A Endoplasmic reticulum resident protein 27; ERP27, PDI, B domain, peptide binding; NMR {Homo sapiens}

Probab=98.88  E-value=1e-07  Score=58.34  Aligned_cols=99  Identities=14%  Similarity=0.191  Sum_probs=76.5

Q ss_pred             cCCCceEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhhhhhCCCcce
Q 032502           21 FAGGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKAT  100 (139)
Q Consensus        21 ~~~~~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~  100 (139)
                      .+...+..+.+.++++..+    ..++++||-|+.+||+.|   .+.+.++++.+.++.|...+   +.++.+.|++. .
T Consensus        18 gP~~~~~~i~s~~e~e~fi----~~~~v~VVGfF~~~~~~~---~~~F~~~A~~~~d~~F~~t~---~~~v~~~~~v~-~   86 (124)
T 2l4c_A           18 GAAQEPTWLTDVPAAMEFI----AATEVAVIGFFQDLEIPA---VPILHSMVQKFPGVSFGIST---DSEVLTHYNIT-G   86 (124)
T ss_dssp             CCSCCCEECCSHHHHHHHH----HTSSEEEEEECSCTTSTH---HHHHHHHHHHCTTSEEEEEC---CHHHHHHTTCC-S
T ss_pred             CCCCcceEcCCHHHHHHHH----hcCCCEEEEEECCCCChh---HHHHHHHHHhCCCceEEEEC---hHHHHHHcCCC-C
Confidence            3344455677888887776    457899999999999998   56788888888779988775   47788999998 7


Q ss_pred             eEEEEEeCCe-EEEEEeC----C-ChHHHHHHHHHH
Q 032502          101 PTFFFLKDGQ-QVDKLVG----A-NKPELQKKVAAA  130 (139)
Q Consensus       101 Pt~~~~~~g~-~~~~~~g----~-~~~~l~~~i~~~  130 (139)
                      |++++|+++. ....+.|    . +.+.|.+||...
T Consensus        87 ~~vvlfkkfde~~~~~~g~~~~~~~~~~L~~FI~~n  122 (124)
T 2l4c_A           87 NTICLFRLVDNEQLNLEDEDIESIDATKLSRFIEIN  122 (124)
T ss_dssp             SCEEEEETTTTEEEEECHHHHTTCCHHHHHHHHHHH
T ss_pred             CeEEEEEcCCCCceeecCcccCCCCHHHHHHHHHHh
Confidence            9999997653 3344555    4 899999998764

>2khp_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Brucella melitensis}

Probab=98.83  E-value=1.2e-08  Score=58.93  Aligned_cols=57  Identities=14%  Similarity=0.234  Sum_probs=43.8

Q ss_pred             EEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchh----hhhhCCCcceeEEEEEeCCeEEE
Q 032502           50 IANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVE----FSTSWDIKATPTFFFLKDGQQVD  113 (139)
Q Consensus        50 lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~----~~~~~~v~~~Pt~~~~~~g~~~~  113 (139)
                      ++.|+++||++|+.+.+.|++.     ++.|..+|++.++.    +.+.+++.++|+++  .+|+.+.
T Consensus         8 v~ly~~~~C~~C~~~~~~L~~~-----~i~~~~~di~~~~~~~~~l~~~~~~~~vP~l~--~~g~~i~   68 (92)
T 2khp_A            8 VIIYTRPGCPYCARAKALLARK-----GAEFNEIDASATPELRAEMQERSGRNTFPQIF--IGSVHVG   68 (92)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT-----TCCCEEEESTTSHHHHHHHHHHHTSSCCCEEE--ETTEEEE
T ss_pred             EEEEECCCChhHHHHHHHHHHc-----CCCcEEEECCCCHHHHHHHHHHhCCCCcCEEE--ECCEEEc
Confidence            6679999999999999988765     57777888886644    44478999999753  4776543

>3ctg_A Glutaredoxin-2; reduced form, electron transport, mitochondrion, redox-activ transit peptide, transport, oxidoreductase; 1.50A {Saccharomyces cerevisiae} PDB: 3ctf_A 3d4m_A 3d5j_A*

Probab=98.82  E-value=5.2e-09  Score=64.57  Aligned_cols=60  Identities=20%  Similarity=0.458  Sum_probs=43.3

Q ss_pred             EEEEeCCCChhhhhh-hHhHHHHHHhCCCcEEEEEeCCcc-------hhhhhhCCCcceeEEEEEeCCeEEE
Q 032502           50 IANFSATWCGPCRMI-APFFSELSEKYPSLMFLLVDVDEL-------VEFSTSWDIKATPTFFFLKDGQQVD  113 (139)
Q Consensus        50 lv~f~~~~C~~C~~~-~~~l~~~~~~~~~v~~~~vd~~~~-------~~~~~~~~v~~~Pt~~~~~~g~~~~  113 (139)
                      |+.|+.+||++|+.+ .+.|.++...  .+.+..+|++.+       .++.+.+|...+|++++  +|+.+.
T Consensus        39 Vvvy~~~~Cp~C~~a~k~~L~~~~~~--~i~~~~vdvd~~~~~~~~~~~L~~~~g~~tVP~vfi--~g~~ig  106 (129)
T 3ctg_A           39 VFVAAKTYCPYCKATLSTLFQELNVP--KSKALVLELDEMSNGSEIQDALEEISGQKTVPNVYI--NGKHIG  106 (129)
T ss_dssp             EEEEECTTCHHHHHHHHHHHTTSCCC--GGGEEEEEGGGSTTHHHHHHHHHHHHSCCSSCEEEE--TTEEEE
T ss_pred             EEEEECCCCCchHHHHHHHHHhcCcc--CCCcEEEEccccCCHHHHHHHHHHHhCCCCCCEEEE--CCEEEc
Confidence            567899999999999 8877665311  156666676644       35777889999999744  887554

>3h8q_A Thioredoxin reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC, developmental protein, differentiation; 2.21A {Homo sapiens} SCOP: c.47.1.0

Probab=98.78  E-value=3.7e-08  Score=59.33  Aligned_cols=57  Identities=21%  Similarity=0.387  Sum_probs=43.0

Q ss_pred             EEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCc--c-----hhhhhhCCCcceeEEEEEeCCeEEE
Q 032502           50 IANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDE--L-----VEFSTSWDIKATPTFFFLKDGQQVD  113 (139)
Q Consensus        50 lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~--~-----~~~~~~~~v~~~Pt~~~~~~g~~~~  113 (139)
                      ++.|+++|||+|+++...|.++     ++.|..+|++.  +     ..+.+..|...+|++++  +|+.+.
T Consensus        19 v~vy~~~~Cp~C~~ak~~L~~~-----~i~~~~~dvd~~~~~~~~~~~l~~~~g~~tvP~vfi--~g~~ig   82 (114)
T 3h8q_A           19 VVIFSKSYCPHSTRVKELFSSL-----GVECNVLELDQVDDGARVQEVLSEITNQKTVPNIFV--NKVHVG   82 (114)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT-----TCCCEEEETTTSTTHHHHHHHHHHHHSCCSSCEEEE--TTEEEE
T ss_pred             EEEEEcCCCCcHHHHHHHHHHc-----CCCcEEEEecCCCChHHHHHHHHHHhCCCccCEEEE--CCEEEe
Confidence            3449999999999999999875     45566677764  2     23456678999999977  887655

>4f82_A Thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.85A {Burkholderia cenocepacia}

Probab=98.71  E-value=1e-07  Score=61.71  Aligned_cols=74  Identities=18%  Similarity=0.291  Sum_probs=54.4

Q ss_pred             CCCEEE-EEEeCCCChhhhh-hhHhHHHHHHhCC--Cc-EEEEEeCCc-----------------------chhhhhhCC
Q 032502           45 EGKIVI-ANFSATWCGPCRM-IAPFFSELSEKYP--SL-MFLLVDVDE-----------------------LVEFSTSWD   96 (139)
Q Consensus        45 ~~k~vl-v~f~~~~C~~C~~-~~~~l~~~~~~~~--~v-~~~~vd~~~-----------------------~~~~~~~~~   96 (139)
                      ++|++| +.|++.||+.|.. ..+.|.+.++++.  ++ .++.|..|.                       +.++++.||
T Consensus        46 ~Gk~vVL~fyP~~~tp~Ct~~El~~f~~~~~ef~~~g~d~VigIS~D~~~~~~~f~~~~~l~~~f~lLsD~~~~va~ayG  125 (176)
T 4f82_A           46 AGKRVVIFGLPGAFTPTCSAQHVPGYVEHAEQLRAAGIDEIWCVSVNDAFVMGAWGRDLHTAGKVRMMADGSAAFTHALG  125 (176)
T ss_dssp             TTCEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHHTTCCEEEEEESSCHHHHHHHHHHTTCTTTSEEEECTTCHHHHHHT
T ss_pred             CCCeEEEEEEcCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEEEeCCCHHHHHHHHHHhCCCCCceEEEcCchHHHHHhC
Confidence            577554 4556999999999 9999999988884  68 888888863                       234566777


Q ss_pred             Cc-----------ceeEEEEEeCCeEEEEEeCC
Q 032502           97 IK-----------ATPTFFFLKDGQQVDKLVGA  118 (139)
Q Consensus        97 v~-----------~~Pt~~~~~~g~~~~~~~g~  118 (139)
                      +.           ..|+.+++++|+++..+.+.
T Consensus       126 v~~~~~~~G~g~~s~R~tfII~dG~I~~~~~~~  158 (176)
T 4f82_A          126 LTQDLSARGMGIRSLRYAMVIDGGVVKTLAVEA  158 (176)
T ss_dssp             CEEECGGGTCCEEECCEEEEEETTEEEEEEECC
T ss_pred             CCccccccCCCcccccEEEEEcCCEEEEEEEcC
Confidence            63           23554444999999888754

>1un2_A DSBA, thiol-disulfide interchange protein; disulfide oxidoreductase, oxidoreductase, protein disulfide isomerase, protein folding, thioredoxin; 2.4A {Escherichia coli} SCOP: c.47.1.13

Probab=98.69  E-value=9e-09  Score=67.90  Aligned_cols=43  Identities=16%  Similarity=0.387  Sum_probs=39.0

Q ss_pred             CCEEEEEEeCCCChhhhhhhHhH---HHHHHhCC-CcEEEEEeCCcc
Q 032502           46 GKIVIANFSATWCGPCRMIAPFF---SELSEKYP-SLMFLLVDVDEL   88 (139)
Q Consensus        46 ~k~vlv~f~~~~C~~C~~~~~~l---~~~~~~~~-~v~~~~vd~~~~   88 (139)
                      ++++||.||+.||++|+.+.|.+   +++.+.++ ++.|..++++.+
T Consensus       113 ~~~~vveFf~~~C~~C~~~~p~~~~~~~l~~~~~~~v~~~~~~v~~~  159 (197)
T 1un2_A          113 GAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPEGVKMTKYHVNFM  159 (197)
T ss_dssp             TCCSEEEEECTTCHHHHHHHHTSCHHHHHTTSSCTTCCEEEEECSSS
T ss_pred             CCCEEEEEECCCChhHHHhCcccccHHHHHHHCCCCCEEEEeccCcC
Confidence            57899999999999999999999   99999998 599999998764

>3gha_A Disulfide bond formation protein D; BDBD, DSBA-like, TRX-like, oxidoreductase, competence, redox-active center; 1.40A {Bacillus subtilis} PDB: 3eu4_A 3gh9_A 3eu3_A

Probab=98.69  E-value=2.3e-07  Score=61.27  Aligned_cols=85  Identities=14%  Similarity=0.379  Sum_probs=65.3

Q ss_pred             CCCEEEEEEeCCCChhhhhhhHhH-HHHHHhCC---CcEEEEEeCCc---------------------------------
Q 032502           45 EGKIVIANFSATWCGPCRMIAPFF-SELSEKYP---SLMFLLVDVDE---------------------------------   87 (139)
Q Consensus        45 ~~k~vlv~f~~~~C~~C~~~~~~l-~~~~~~~~---~v~~~~vd~~~---------------------------------   87 (139)
                      ..+++|+.|+...||+|+.+.+.+ ..+.+.|.   ++.|+..+..-                                 
T Consensus        28 ~a~vtvvef~D~~CP~C~~~~~~~~~~l~~~~~~~g~v~~~~~~~p~~~~~s~~Aa~aa~a~~~~~~~~f~~~~~aLf~~  107 (202)
T 3gha_A           28 DAPVTVVEFGDYKCPSCKVFNSDIFPKIQKDFIDKGDVKFSFVNVMFHGKGSRLAALASEEVWKEDPDSFWDFHEKLFEK  107 (202)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHHHTHHHHHHHTTTTTSEEEEEEECCCSHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred             CCCEEEEEEECCCChhHHHHHHHhhHHHHHHhccCCeEEEEEEecCccchhHHHHHHHHHHHHhhCHHHHHHHHHHHHHh
Confidence            467899999999999999999876 66777774   48887766510                                 


Q ss_pred             --------------------------------------------chhhhhhCCCcceeEEEEEeCCeEEEEEeCC-ChHH
Q 032502           88 --------------------------------------------LVEFSTSWDIKATPTFFFLKDGQQVDKLVGA-NKPE  122 (139)
Q Consensus        88 --------------------------------------------~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~  122 (139)
                                                                  +...+.++||.++||+++  ||+.   +.|. +.+.
T Consensus       108 ~~~~~~~~~~~~~L~~~a~~~~Gld~~~~~~~l~s~~~~~~v~~~~~~a~~~gV~gtPtfvv--nG~~---~~G~~~~e~  182 (202)
T 3gha_A          108 QPDTEQEWVTPGLLGDLAKSTTKIKPETLKENLDKETFASQVEKDSDLNQKMNIQATPTIYV--NDKV---IKNFADYDE  182 (202)
T ss_dssp             CCSSSSCCCCHHHHHHHHHHHSSSCHHHHHHHHHHTTTHHHHHHHHHHHHHTTCCSSCEEEE--TTEE---CSCTTCHHH
T ss_pred             CccccccccCHHHHHHHHHHhcCCCHHHHHHHHhChHHHHHHHHHHHHHHHcCCCcCCEEEE--CCEE---ecCCCCHHH
Confidence                                                        011244688999999999  8875   4576 9999


Q ss_pred             HHHHHHHHhhcc
Q 032502          123 LQKKVAAAVDSV  134 (139)
Q Consensus       123 l~~~i~~~~~~~  134 (139)
                      |.+.|++++...
T Consensus       183 l~~~i~~~~~~~  194 (202)
T 3gha_A          183 IKETIEKELKGK  194 (202)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhh
Confidence            999999987764

>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A

Probab=98.66  E-value=4.6e-08  Score=60.71  Aligned_cols=69  Identities=16%  Similarity=0.260  Sum_probs=46.7

Q ss_pred             HHHHHHhhCCCEEEEEEeC----CCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhh----hhhCCCcceeEEEEEeC
Q 032502           37 QKMSEASKEGKIVIANFSA----TWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEF----STSWDIKATPTFFFLKD  108 (139)
Q Consensus        37 ~~~~~~~~~~k~vlv~f~~----~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~----~~~~~v~~~Pt~~~~~~  108 (139)
                      ..+......++ |+||.++    +||++|+++...|.+.     ++.|..+|++.++++    .+..|...+|.+++  +
T Consensus        26 ~~v~~~i~~~~-Vvvy~ks~~~~~~Cp~C~~ak~~L~~~-----gv~y~~vdI~~d~~~~~~L~~~~G~~tvP~VfI--~   97 (135)
T 2wci_A           26 EKIQRQIAENP-ILLYMKGSPKLPSCGFSAQAVQALAAC-----GERFAYVDILQNPDIRAELPKYANWPTFPQLWV--D   97 (135)
T ss_dssp             HHHHHHHHHCS-EEEEESBCSSSBSSHHHHHHHHHHHTT-----CSCCEEEEGGGCHHHHHHHHHHHTCCSSCEEEE--T
T ss_pred             HHHHHHhccCC-EEEEEEecCCCCCCccHHHHHHHHHHc-----CCceEEEECCCCHHHHHHHHHHHCCCCcCEEEE--C
Confidence            33433334444 5454444    8999999999988665     677888898876554    33457889998765  8


Q ss_pred             CeEEE
Q 032502          109 GQQVD  113 (139)
Q Consensus       109 g~~~~  113 (139)
                      |+.+.
T Consensus        98 G~~iG  102 (135)
T 2wci_A           98 GELVG  102 (135)
T ss_dssp             TEEEE
T ss_pred             CEEEE
Confidence            87553

>3f4s_A Alpha-DSBA1, putative uncharacterized protein; thioredoxin-fold, oxidoreductase; HET: PGE; 1.55A {Wolbachia pipientis} PDB: 3f4r_A* 3f4t_A*

Probab=98.56  E-value=3.4e-07  Score=61.59  Aligned_cols=90  Identities=17%  Similarity=0.328  Sum_probs=64.8

Q ss_pred             CCCEEEEEEeCCCChhhhhhhHh-HHHHHHhCC---CcEEEEEeCCc---------------------------------
Q 032502           45 EGKIVIANFSATWCGPCRMIAPF-FSELSEKYP---SLMFLLVDVDE---------------------------------   87 (139)
Q Consensus        45 ~~k~vlv~f~~~~C~~C~~~~~~-l~~~~~~~~---~v~~~~vd~~~---------------------------------   87 (139)
                      ..+++|+.|+...||+|+.+.+. +.++.++|.   ++.|+..+..-                                 
T Consensus        38 ~A~vtIvef~Dy~CP~C~~~~~~~~~~l~~~~~~~g~V~~v~~~~p~~~~s~~Aa~aa~aa~~~~~f~~~~~aLF~~q~~  117 (226)
T 3f4s_A           38 KAPILMIEYASLTCYHCSLFHRNVFPKIKEKYIDTGKMLYIFRHFPLDYRGLKAAMLSHCYEKQEDYFNFNKAVFNSIDS  117 (226)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHHHTHHHHHHHHTTTTSEEEEEEECCCSHHHHHHHHHGGGCCSHHHHHHHHHHHHHTGGG
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHcccCCeEEEEEEeCCCChhHHHHHHHHHHhhChHHHHHHHHHHHHhCHh
Confidence            45788999999999999999985 578887773   47776655410                                 


Q ss_pred             -----------------------------------------chhhhhh-CCCcceeEEEEE-eCCeEEE-----EEeCC-
Q 032502           88 -----------------------------------------LVEFSTS-WDIKATPTFFFL-KDGQQVD-----KLVGA-  118 (139)
Q Consensus        88 -----------------------------------------~~~~~~~-~~v~~~Pt~~~~-~~g~~~~-----~~~g~-  118 (139)
                                                               +...+.+ +||.++||+++. .||+.+.     ...|. 
T Consensus       118 ~~~~~~~~~~~L~~iA~~~Gld~~~~~~~l~s~~~~~~v~~~~~~a~~~~GV~GtPtfvv~~~nG~~~~Ga~~~~~~G~~  197 (226)
T 3f4s_A          118 WNYYNLSDLTLLQRIAALSNLKQDAFNQCINDKKIMDKIVNDKSLAINKLGITAVPIFFIKLNDDKSYIEHNKVKHGGYK  197 (226)
T ss_dssp             SCSSSTTCCHHHHHHHHHTTCCHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCSSCEEEEEECCTTCCCCGGGGEEESCC
T ss_pred             hcccccCcHHHHHHHHHHcCCCHHHHHHHHhCHHHHHHHHHHHHHHHHHcCCCcCCEEEEEcCCCEEeeCCCCccccccc
Confidence                                                     0112456 899999999996 4776542     22344 


Q ss_pred             ChHHHHHHHHHHhhcc
Q 032502          119 NKPELQKKVAAAVDSV  134 (139)
Q Consensus       119 ~~~~l~~~i~~~~~~~  134 (139)
                      +.+.|.+.|++++++.
T Consensus       198 ~~e~l~~~I~~~l~~~  213 (226)
T 3f4s_A          198 ELKYFTNVIDKLYGKA  213 (226)
T ss_dssp             CHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhcC
Confidence            4899999999988764

>4f9z_D Endoplasmic reticulum resident protein 27; thioredoxin fold, ER foldase, ERP57, binding protein; HET: PE3 PE4; 2.20A {Homo sapiens} PDB: 2l4c_A

Probab=98.53  E-value=1.6e-06  Score=58.08  Aligned_cols=96  Identities=13%  Similarity=0.172  Sum_probs=74.5

Q ss_pred             CceEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhhhhhCCCcceeEE
Q 032502           24 GNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTF  103 (139)
Q Consensus        24 ~~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~  103 (139)
                      +.+..+.+.++++..+    .+++++||-|+++||   ....+.+.++++.+.++.|....   +.+++++|++.+ |++
T Consensus         9 ~~~~~l~s~~~~~~~l----~~~~v~vVgff~~~~---~~~~~~f~~~A~~l~~~~F~~t~---~~~v~~~~~v~~-p~i   77 (227)
T 4f9z_D            9 QEPTWLTDVPAAMEFI----AATEVAVIGFFQDLE---IPAVPILHSMVQKFPGVSFGIST---DSEVLTHYNITG-NTI   77 (227)
T ss_dssp             CCCEECCSHHHHHHHH----HTSSEEEEEECSCSC---STHHHHHHHHTTTCTTSEEEEEC---CHHHHHHTTCCS-SEE
T ss_pred             CCCeeeCCHHHHHHHH----hcCCeEEEEEecCCC---chhHHHHHHHHHhCCCceEEEEC---CHHHHHHcCCCC-CeE
Confidence            4567778888888766    457899999999984   67889999999999778887643   678899999998 999


Q ss_pred             EEEeCCe-EEEEEeC-----CChHHHHHHHHHH
Q 032502          104 FFLKDGQ-QVDKLVG-----ANKPELQKKVAAA  130 (139)
Q Consensus       104 ~~~~~g~-~~~~~~g-----~~~~~l~~~i~~~  130 (139)
                      ++|+.+. ....+.|     .+.+.|.+||...
T Consensus        78 ~lfk~~~~~~~~~~~~~~g~~~~~~l~~fi~~~  110 (227)
T 4f9z_D           78 CLFRLVDNEQLNLEDEDIESIDATKLSRFIEIN  110 (227)
T ss_dssp             EEEETTTTEEEEECHHHHHTCCHHHHHHHHHHH
T ss_pred             EEEEecCcccccccccccCCCCHHHHHHHHHHh
Confidence            9997532 2233442     4889999998875

>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1

Probab=98.52  E-value=2.3e-07  Score=55.39  Aligned_cols=58  Identities=21%  Similarity=0.300  Sum_probs=43.5

Q ss_pred             EEEEEEeC-----CCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchh----hhhhCCCcceeEEEEEeCCeEEE
Q 032502           48 IVIANFSA-----TWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVE----FSTSWDIKATPTFFFLKDGQQVD  113 (139)
Q Consensus        48 ~vlv~f~~-----~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~----~~~~~~v~~~Pt~~~~~~g~~~~  113 (139)
                      .++| |+.     +||++|+.+...|.++     ++.|..+|++.++.    +.+.+|...+|+++  .+|+.+.
T Consensus        16 ~vvv-y~~g~~~~~~Cp~C~~ak~~L~~~-----~i~~~~vdi~~~~~~~~~l~~~~g~~~vP~if--i~g~~ig   82 (109)
T 1wik_A           16 SVML-FMKGNKQEAKCGFSKQILEILNST-----GVEYETFDILEDEEVRQGLKTFSNWPTYPQLY--VRGDLVG   82 (109)
T ss_dssp             SEEE-EESSTTTCCCSSTHHHHHHHHHHT-----CSCEEEEESSSCHHHHHHHHHHHSCCSSCEEE--CSSSEEE
T ss_pred             CEEE-EEecCCCCCCCchHHHHHHHHHHc-----CCCeEEEECCCCHHHHHHHHHHhCCCCCCEEE--ECCEEEc
Confidence            3444 666     9999999999998765     67888999988764    44456888999854  4777544

>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}

Probab=98.52  E-value=1.4e-07  Score=56.64  Aligned_cols=68  Identities=12%  Similarity=0.236  Sum_probs=46.9

Q ss_pred             HHHHHHhhCCCEEEEEEeC-----CCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhhhh----hCCCcceeEEEEEe
Q 032502           37 QKMSEASKEGKIVIANFSA-----TWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFST----SWDIKATPTFFFLK  107 (139)
Q Consensus        37 ~~~~~~~~~~k~vlv~f~~-----~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~----~~~v~~~Pt~~~~~  107 (139)
                      ..+.....++ +| +.|..     +||++|++....|.+.     ++.|..+|++.++++.+    ..|...+|.+++  
T Consensus         7 ~~v~~~i~~~-~V-vlf~kg~~~~~~Cp~C~~ak~~L~~~-----gi~y~~~di~~d~~~~~~l~~~~g~~tvP~ifi--   77 (111)
T 3zyw_A            7 LRLKKLTHAA-PC-MLFMKGTPQEPRCGFSKQMVEILHKH-----NIQFSSFDIFSDEEVRQGLKAYSSWPTYPQLYV--   77 (111)
T ss_dssp             HHHHHHHTSS-SE-EEEESBCSSSBSSHHHHHHHHHHHHT-----TCCCEEEEGGGCHHHHHHHHHHHTCCSSCEEEE--
T ss_pred             HHHHHHHhcC-CE-EEEEecCCCCCcchhHHHHHHHHHHc-----CCCeEEEECcCCHHHHHHHHHHHCCCCCCEEEE--
Confidence            3344443444 44 44777     9999999999988765     56777888887665433    347789999876  


Q ss_pred             CCeEEE
Q 032502          108 DGQQVD  113 (139)
Q Consensus       108 ~g~~~~  113 (139)
                      +|+.+.
T Consensus        78 ~g~~iG   83 (111)
T 3zyw_A           78 SGELIG   83 (111)
T ss_dssp             TTEEEE
T ss_pred             CCEEEe
Confidence            886554

>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A

Probab=98.49  E-value=4.4e-07  Score=54.19  Aligned_cols=69  Identities=16%  Similarity=0.292  Sum_probs=46.3

Q ss_pred             HHHHHHHhhCCCEEEEEEeC-----CCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhh----hhhCCCcceeEEEEE
Q 032502           36 DQKMSEASKEGKIVIANFSA-----TWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEF----STSWDIKATPTFFFL  106 (139)
Q Consensus        36 ~~~~~~~~~~~k~vlv~f~~-----~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~----~~~~~v~~~Pt~~~~  106 (139)
                      ...+.....+++ |+| |..     |||++|++....|.+.     ++.|..+|+++++++    .+..|...+|.+++ 
T Consensus         8 ~~~v~~~i~~~~-Vvv-y~k~t~~~p~Cp~C~~ak~~L~~~-----gi~~~~~dI~~~~~~~~~l~~~~g~~tvP~ifi-   79 (109)
T 3ipz_A            8 KDTLEKLVNSEK-VVL-FMKGTRDFPMCGFSNTVVQILKNL-----NVPFEDVNILENEMLRQGLKEYSNWPTFPQLYI-   79 (109)
T ss_dssp             HHHHHHHHTSSS-EEE-EESBCSSSBSSHHHHHHHHHHHHT-----TCCCEEEEGGGCHHHHHHHHHHHTCSSSCEEEE-
T ss_pred             HHHHHHHHccCC-EEE-EEecCCCCCCChhHHHHHHHHHHc-----CCCcEEEECCCCHHHHHHHHHHHCCCCCCeEEE-
Confidence            334444434444 444 454     5999999999998775     567778888766554    33447889998766 


Q ss_pred             eCCeEEE
Q 032502          107 KDGQQVD  113 (139)
Q Consensus       107 ~~g~~~~  113 (139)
                       +|+.+.
T Consensus        80 -~g~~iG   85 (109)
T 3ipz_A           80 -GGEFFG   85 (109)
T ss_dssp             -TTEEEE
T ss_pred             -CCEEEe
Confidence             886554

>1xiy_A Peroxiredoxin, pfaop; alpha-aneurysm, thioredoxin fold, peroxiredoxin fold, oxidoreductase; 1.80A {Plasmodium falciparum} SCOP: c.47.1.10

Probab=98.47  E-value=5.9e-07  Score=58.48  Aligned_cols=75  Identities=9%  Similarity=0.132  Sum_probs=54.9

Q ss_pred             hCCCEEEEEEe-CCCChhhh-hhhHhHHHHHHhC---CCcE-EEEEeCCc----------------------chhhhhhC
Q 032502           44 KEGKIVIANFS-ATWCGPCR-MIAPFFSELSEKY---PSLM-FLLVDVDE----------------------LVEFSTSW   95 (139)
Q Consensus        44 ~~~k~vlv~f~-~~~C~~C~-~~~~~l~~~~~~~---~~v~-~~~vd~~~----------------------~~~~~~~~   95 (139)
                      ..+|++||+|| +.||+.|. ...+.+.+.+.++   .++. ++.|..|.                      +..+++.|
T Consensus        41 ~~gk~vVL~fyP~~fTp~Ct~~e~~~f~~~~~~f~~~~g~~~V~gvS~D~~~~~~~~~~~~~~~~f~lLsD~~~~~a~~y  120 (182)
T 1xiy_A           41 FNNKKILLISLPGAFTPTCSTKMIPGYEEEYDYFIKENNFDDIYCITNNDIYVLKSWFKSMDIKKIKYISDGNSSFTDSM  120 (182)
T ss_dssp             STTCEEEEEECSCTTCHHHHHTHHHHHHHTHHHHHTTSCCSEEEEEESSCHHHHHHHHHHTTCCSSEEEECTTSHHHHHT
T ss_pred             hCCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCCCHHHHHHHHHHcCCCCceEEEeCchHHHHHh
Confidence            36888888888 88999999 8999998888877   4674 88787753                      23467778


Q ss_pred             CCc------c-----eeEEEEEeCCeEEEEEeCC
Q 032502           96 DIK------A-----TPTFFFLKDGQQVDKLVGA  118 (139)
Q Consensus        96 ~v~------~-----~Pt~~~~~~g~~~~~~~g~  118 (139)
                      |+.      +     ....+++.+|++...+...
T Consensus       121 Gv~~~~~~~G~g~~~~R~tfvIddG~V~~~~v~~  154 (182)
T 1xiy_A          121 NMLVDKSNFFMGMRPWRFVAIVENNILVKMFQEK  154 (182)
T ss_dssp             TCEEECGGGTCCEEECCEEEEEETTEEEEEEECS
T ss_pred             CCceeccccCCCCceEEEEEEEcCCEEEEEEEeC
Confidence            863      1     2344444699999887543

>3c7m_A Thiol:disulfide interchange protein DSBA-like; redox protein, periplasm, redox-active center, oxidoreductase; HET: PGE; 1.55A {Escherichia coli} PDB: 3l9u_A

Probab=98.43  E-value=7e-07  Score=58.12  Aligned_cols=39  Identities=15%  Similarity=0.170  Sum_probs=32.3

Q ss_pred             CCEEEEEEeCCCChhhhhhhHhH-HHHHHhCCC-cEEEEEe
Q 032502           46 GKIVIANFSATWCGPCRMIAPFF-SELSEKYPS-LMFLLVD   84 (139)
Q Consensus        46 ~k~vlv~f~~~~C~~C~~~~~~l-~~~~~~~~~-v~~~~vd   84 (139)
                      .++++|.||...||+|..+.+.+ .++.+.+++ +.+..+.
T Consensus        17 ~~~~~ief~d~~CP~C~~~~~~l~~~l~~~~~~~v~~~~~~   57 (195)
T 3c7m_A           17 ADKTLIKVFSYACPFCYKYDKAVTGPVSEKVKDIVAFTPFH   57 (195)
T ss_dssp             CTTEEEEEECTTCHHHHHHHHHTHHHHHHHTTTTCEEEEEE
T ss_pred             CCcEEEEEEeCcCcchhhCcHHHHHHHHHhCCCceEEEEEe
Confidence            45678889999999999999999 999988874 6665554

>3l4n_A Monothiol glutaredoxin-6; C-terminal domain of GRX6, oxidoreductase; HET: GSH; 1.50A {Saccharomyces cerevisiae}

Probab=98.34  E-value=2.6e-07  Score=56.73  Aligned_cols=61  Identities=13%  Similarity=0.179  Sum_probs=39.5

Q ss_pred             EEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcc-h----hhhhhCCCcceeEEEEEeCCeEE
Q 032502           50 IANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDEL-V----EFSTSWDIKATPTFFFLKDGQQV  112 (139)
Q Consensus        50 lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~-~----~~~~~~~v~~~Pt~~~~~~g~~~  112 (139)
                      |+.|+.+|||+|.++...|.+....-..+.++.+|.+.+ .    .+.+..|...+|++++  +|+.+
T Consensus        16 Vvvysk~~Cp~C~~ak~lL~~~~~~~v~~~~idid~~~d~~~~~~~l~~~~G~~tVP~IfI--~G~~I   81 (127)
T 3l4n_A           16 IIIFSKSTCSYSKGMKELLENEYQFIPNYYIIELDKHGHGEELQEYIKLVTGRGTVPNLLV--NGVSR   81 (127)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHEEEESCCEEEEGGGSTTHHHHHHHHHHHHSCCSSCEEEE--TTEEC
T ss_pred             EEEEEcCCCccHHHHHHHHHHhcccCCCcEEEEecCCCCHHHHHHHHHHHcCCCCcceEEE--CCEEE
Confidence            566899999999999999987421112344444443322 1    2334458899999977  78654

>2axo_A Hypothetical protein ATU2684; alpha beta protein., structural genomics, PSI, protein struc initiative; 1.80A {Agrobacterium tumefaciens str} SCOP: c.47.1.19

Probab=98.33  E-value=1.1e-05  Score=55.32  Aligned_cols=81  Identities=16%  Similarity=0.263  Sum_probs=58.6

Q ss_pred             EEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCC------------------cchhhhhhCCCcce--eEEEEEe
Q 032502           48 IVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVD------------------ELVEFSTSWDIKAT--PTFFFLK  107 (139)
Q Consensus        48 ~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~------------------~~~~~~~~~~v~~~--Pt~~~~~  107 (139)
                      ..|..|++++|++|......|.++...+ ++....++.+                  ....+.+++|.+++  |.+++  
T Consensus        44 ~~VelyTs~gCp~C~~Ak~lL~~~~~~~-~vi~l~~~v~~~dylgw~D~~a~~~~~~r~~~~~~~~G~~tVyTPqI~I--  120 (270)
T 2axo_A           44 GVVELFTSQGCASCPPADEALRKMIQKG-DVVGLSYHVDYWNYLGWTDSLASKENTERQYGYMRALGRNGVYTPQAIL--  120 (270)
T ss_dssp             CEEEEEECTTCTTCHHHHHHHHHHHHHT-SSEEEEEECSTTCSSSSCCTTCCHHHHHHHHHHHHHTTCSCCCSSEEEE--
T ss_pred             cEEEEEeCCCCCChHHHHHHHHHhhccC-CeeeEEEEEEEecccccccchhhhhhhHHHHHHHHHhCCCcccCCEEEE--
Confidence            5677788999999999999999998775 4432223322                  12346778999988  99888  


Q ss_pred             CCeEEEEEeCCChHHHHHHHHHHhhc
Q 032502          108 DGQQVDKLVGANKPELQKKVAAAVDS  133 (139)
Q Consensus       108 ~g~~~~~~~g~~~~~l~~~i~~~~~~  133 (139)
                      ||+..  ..|.+.+.|.+.|.+..+.
T Consensus       121 ng~~~--v~G~d~~~l~~~l~~~~~~  144 (270)
T 2axo_A          121 NGRDH--VKGADVRGIYDRLDAFKRE  144 (270)
T ss_dssp             TTTEE--EETTCHHHHHHHHHHHHHT
T ss_pred             CCEEe--ecCCCHHHHHHHHHHhhcc
Confidence            77742  3477888888888776554

>3bci_A Disulfide bond protein A; thiol-disulfide oxidoreductase, redox protein, protein folding, redox active centre; 1.81A {Staphylococcus aureus} PDB: 3bd2_A 3bck_A

Probab=98.30  E-value=6.6e-06  Score=53.30  Aligned_cols=41  Identities=17%  Similarity=0.439  Sum_probs=31.7

Q ss_pred             CCCEEEEEEeCCCChhhhhhhHhH-HHHHHhCC---CcEEEEEeC
Q 032502           45 EGKIVIANFSATWCGPCRMIAPFF-SELSEKYP---SLMFLLVDV   85 (139)
Q Consensus        45 ~~k~vlv~f~~~~C~~C~~~~~~l-~~~~~~~~---~v~~~~vd~   85 (139)
                      ..++.|+.|+...||+|..+.+.+ ..+.+.|+   ++.++....
T Consensus        10 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~l~~~~~~~~~v~~~~~~~   54 (186)
T 3bci_A           10 NGKPLVVVYGDYKCPYCKELDEKVMPKLRKNYIDNHKVEYQFVNL   54 (186)
T ss_dssp             -CCCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTSSEEEEEEC
T ss_pred             CCCeEEEEEECCCChhHHHHHHHHHHHHHHHhccCCeEEEEEEec
Confidence            457889999999999999999998 56777774   466655443

>2ct6_A SH3 domain-binding glutamic acid-rich-like protein 2; SH3BGRL2,FASH3, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.29  E-value=1.1e-06  Score=52.62  Aligned_cols=57  Identities=19%  Similarity=0.190  Sum_probs=41.4

Q ss_pred             EEEEeCCCChhhh------hhhHhHHHHHHhCCCcEEEEEeCCcchh----hhhhC--------CCcceeEEEEEeCCeE
Q 032502           50 IANFSATWCGPCR------MIAPFFSELSEKYPSLMFLLVDVDELVE----FSTSW--------DIKATPTFFFLKDGQQ  111 (139)
Q Consensus        50 lv~f~~~~C~~C~------~~~~~l~~~~~~~~~v~~~~vd~~~~~~----~~~~~--------~v~~~Pt~~~~~~g~~  111 (139)
                      |+.|+.++|++|.      ++...|++.     ++.|..+|++.+++    +.+.+        |...+|.+++  +|+.
T Consensus        10 V~vy~~~~C~~C~~~~~~~~ak~~L~~~-----gi~y~~vdI~~~~~~~~~l~~~~~~~~~~~~g~~tvP~vfi--~g~~   82 (111)
T 2ct6_A           10 IRVFIASSSGFVAIKKKQQDVVRFLEAN-----KIEFEEVDITMSEEQRQWMYKNVPPEKKPTQGNPLPPQIFN--GDRY   82 (111)
T ss_dssp             EEEEECSSCSCHHHHHHHHHHHHHHHHT-----TCCEEEEETTTCHHHHHHHHHSCCTTTCCSSSSCCSCEEEE--TTEE
T ss_pred             EEEEEcCCCCCcccchhHHHHHHHHHHc-----CCCEEEEECCCCHHHHHHHHHHhcccccccCCCCCCCEEEE--CCEE
Confidence            5668899999999      566666543     67888999987654    44454        7778998876  7765


Q ss_pred             EE
Q 032502          112 VD  113 (139)
Q Consensus       112 ~~  113 (139)
                      +.
T Consensus        83 iG   84 (111)
T 2ct6_A           83 CG   84 (111)
T ss_dssp             EE
T ss_pred             Ee
Confidence            54

>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}

Probab=98.28  E-value=1.1e-05  Score=49.05  Aligned_cols=68  Identities=16%  Similarity=0.270  Sum_probs=45.8

Q ss_pred             HHHHHHhhCCCEEEEEEeC-----CCChhhhhhhHhHHHHHHhCCCcE---EEEEeCCcchhh----hhhCCCcceeEEE
Q 032502           37 QKMSEASKEGKIVIANFSA-----TWCGPCRMIAPFFSELSEKYPSLM---FLLVDVDELVEF----STSWDIKATPTFF  104 (139)
Q Consensus        37 ~~~~~~~~~~k~vlv~f~~-----~~C~~C~~~~~~l~~~~~~~~~v~---~~~vd~~~~~~~----~~~~~v~~~Pt~~  104 (139)
                      ..+.....+++ |+| |..     |||++|+.+...|.+.     ++.   |..+|++.++++    .+..|-..+|.++
T Consensus         7 ~~v~~~i~~~~-Vvv-fsk~t~~~p~Cp~C~~ak~lL~~~-----gv~~~~~~~~dv~~~~~~~~~l~~~sg~~tvP~vf   79 (121)
T 3gx8_A            7 KAIEDAIESAP-VVL-FMKGTPEFPKCGFSRATIGLLGNQ-----GVDPAKFAAYNVLEDPELREGIKEFSEWPTIPQLY   79 (121)
T ss_dssp             HHHHHHHHSCS-EEE-EESBCSSSBCTTHHHHHHHHHHHH-----TBCGGGEEEEECTTCHHHHHHHHHHHTCCSSCEEE
T ss_pred             HHHHHHhccCC-EEE-EEeccCCCCCCccHHHHHHHHHHc-----CCCcceEEEEEecCCHHHHHHHHHHhCCCCCCeEE
Confidence            33444434554 434 444     5999999999999886     454   777888766554    3345788899987


Q ss_pred             EEeCCeEEE
Q 032502          105 FLKDGQQVD  113 (139)
Q Consensus       105 ~~~~g~~~~  113 (139)
                      +  +|+.+.
T Consensus        80 I--~g~~iG   86 (121)
T 3gx8_A           80 V--NKEFIG   86 (121)
T ss_dssp             E--TTEEEE
T ss_pred             E--CCEEEe
Confidence            6  887554

>2xhf_A Peroxiredoxin 5; oxidoreductase, antioxidant enzymes; 1.30A {Alvinella pompejana}

Probab=98.26  E-value=1.8e-06  Score=55.63  Aligned_cols=99  Identities=11%  Similarity=0.077  Sum_probs=65.2

Q ss_pred             ccCCCceEEeechhHHH-HHHHHHh-hCCCEEEEEEe-CCCChhhhhhhHhHHHHHHhCC--CcE-EEEEeCCc------
Q 032502           20 EFAGGNVSLVTTKDIWD-QKMSEAS-KEGKIVIANFS-ATWCGPCRMIAPFFSELSEKYP--SLM-FLLVDVDE------   87 (139)
Q Consensus        20 ~~~~~~~~~i~~~~~~~-~~~~~~~-~~~k~vlv~f~-~~~C~~C~~~~~~l~~~~~~~~--~v~-~~~vd~~~------   87 (139)
                      ...|..+|++...++-. +.+.+.. ..++++||+|| ..||+.|....+.+.+.+.++.  ++. ++.|..|.      
T Consensus        14 ~~vGd~aPdf~l~~~g~~~~v~L~d~~~gk~vVL~fyP~~fTp~Ct~e~~~f~~~~~ef~~~gv~~VigIS~D~~~~~~~   93 (171)
T 2xhf_A           14 IKVGDIIPDVLVYEDVPSKSFPIHDVFRGRKGILFSVVGAFVPGSNNHIPEYLSLYDKFKEEGYHTIACIAVNDPFVMAA   93 (171)
T ss_dssp             CCTTCBCCCCEEECSSTTCEEETHHHHTTSEEEEEECSCTTCTTTTSSHHHHHHTHHHHHHTTCCEEEEEESSCHHHHHH
T ss_pred             ccCcCCCCCeEEecCCCCcEEEhHHHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCCEEEEEeCCCHHHHHH
Confidence            34455555554331110 2344444 37889999998 7899999999999988877775  675 88887763      


Q ss_pred             -----------------chhhhhhCCCcc-----------eeEEEEEeCCeEEEEEeCC
Q 032502           88 -----------------LVEFSTSWDIKA-----------TPTFFFLKDGQQVDKLVGA  118 (139)
Q Consensus        88 -----------------~~~~~~~~~v~~-----------~Pt~~~~~~g~~~~~~~g~  118 (139)
                                       +.++++.||+..           .-..+++.+|++...+...
T Consensus        94 w~~~~~~~~~f~lLSD~~~~~a~ayGv~~~~~~~g~g~~~~R~tfvIddG~V~~~~v~~  152 (171)
T 2xhf_A           94 WGKTVDPEHKIRMLADMHGEFTRALGTELDSSKMLGNNRSRRYAMLIDDNKIRSVSTEP  152 (171)
T ss_dssp             HHHHHCTTCCSEEEECTTSHHHHHHTCBCCCHHHHSSCCBCCEEEEEETTEEEEEEETT
T ss_pred             HHHhcCCCCCeEEEEeCCchHHHHhCCceeccccCCCcceEEEEEEEeCCEEEEEEEeC
Confidence                             234667777631           1233344699999988766

>3kzq_A Putative uncharacterized protein VP2116; protein with unknown function, STRU genomics, PSI, MCSG, protein structure initiative; HET: PG6; 2.10A {Vibrio parahaemolyticus}

Probab=98.24  E-value=4.3e-05  Score=50.35  Aligned_cols=44  Identities=9%  Similarity=0.083  Sum_probs=37.6

Q ss_pred             hhhCCCcceeEEEEEeCCeEEEEEeCC-ChHHHHHHHHHHhhccC
Q 032502           92 STSWDIKATPTFFFLKDGQQVDKLVGA-NKPELQKKVAAAVDSVV  135 (139)
Q Consensus        92 ~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~i~~~~~~~~  135 (139)
                      +..+||.++||+++..+|+.+....|. +.+.+.+.|++++++..
T Consensus       162 a~~~gv~g~Pt~~v~~~~~~~~~~~g~~~~e~~~~~i~~~~~~~~  206 (208)
T 3kzq_A          162 AKSLGVNSYPSLVLQINDAYFPIEVDYLSTEPTLKLIRERIIENM  206 (208)
T ss_dssp             HHHTTCCSSSEEEEEETTEEEEECCCSSCSHHHHHHHHHHHHHTC
T ss_pred             HHHcCCCcccEEEEEECCEEEEeeCCCCCHHHHHHHHHHHHhccc
Confidence            446899999999999999888777788 89999999999987654

>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A

Probab=98.22  E-value=4.8e-06  Score=48.06  Aligned_cols=57  Identities=12%  Similarity=0.182  Sum_probs=41.9

Q ss_pred             EEEEeCCCChhh------hhhhHhHHHHHHhCCCcEEEEEeCCcchh----hhhhCC--CcceeEEEEEeCCeEEE
Q 032502           50 IANFSATWCGPC------RMIAPFFSELSEKYPSLMFLLVDVDELVE----FSTSWD--IKATPTFFFLKDGQQVD  113 (139)
Q Consensus        50 lv~f~~~~C~~C------~~~~~~l~~~~~~~~~v~~~~vd~~~~~~----~~~~~~--v~~~Pt~~~~~~g~~~~  113 (139)
                      |+.|++++|++|      +.+...|.+.     ++.|..+|++.+++    +.+.+|  ...+|.+++  +|+.+.
T Consensus         4 v~ly~~~~C~~c~~~~~~~~ak~~L~~~-----~i~~~~~di~~~~~~~~~l~~~~g~~~~~vP~ifi--~g~~ig   72 (93)
T 1t1v_A            4 LRVYSTSVTGSREIKSQQSEVTRILDGK-----RIQYQLVDISQDNALRDEMRTLAGNPKATPPQIVN--GNHYCG   72 (93)
T ss_dssp             EEEEECSSCSCHHHHHHHHHHHHHHHHT-----TCCCEEEETTSCHHHHHHHHHHTTCTTCCSCEEEE--TTEEEE
T ss_pred             EEEEEcCCCCCchhhHHHHHHHHHHHHC-----CCceEEEECCCCHHHHHHHHHHhCCCCCCCCEEEE--CCEEEe
Confidence            566889999999      6777666543     67788889887643    445678  779998866  777554

>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A

Probab=98.21  E-value=9.4e-06  Score=57.67  Aligned_cols=87  Identities=14%  Similarity=0.194  Sum_probs=69.0

Q ss_pred             CEEEEEEeCCCChhhhhhhHhHHHHHHhCC---CcEEEEEeCCcchhhh----hhCCCc-ceeEEEEEe--CCeEEEE-E
Q 032502           47 KIVIANFSATWCGPCRMIAPFFSELSEKYP---SLMFLLVDVDELVEFS----TSWDIK-ATPTFFFLK--DGQQVDK-L  115 (139)
Q Consensus        47 k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~---~v~~~~vd~~~~~~~~----~~~~v~-~~Pt~~~~~--~g~~~~~-~  115 (139)
                      +..++.|..++|+.|..+.+.++++++++.   .+.|+.+|++..+.++    +.||+. ..|+++++.  +++.... +
T Consensus       246 ~~~~l~f~~~~~~~~~~~~~~~~~vA~~~~~~~~~~f~~id~~~~~~~~~~~~~~~gi~~~~P~~~i~~~~~~~~~~~~~  325 (350)
T 1sji_A          246 GIHIVAFAERSDPDGYEFLEILKQVARDNTDNPDLSIVWIDPDDFPLLVAYWEKTFKIDLFKPQIGVVNVTDADSVWMEI  325 (350)
T ss_dssp             SEEEEEECCTTSHHHHHHHHHHHHHHHHGGGCSSCCEEEECGGGCHHHHHHHHHHCCSCTTSCEEEEEESSSSCEEESCS
T ss_pred             CcEEEEEEcCCCccHHHHHHHHHHHHHHhCCCCceEEEEECchhhHHHHHHHHhhcCCCccCCcEEEEecccccccccCC
Confidence            455566889999999999999999999996   4999999999888777    789998 589999984  3422221 2


Q ss_pred             e---CC-ChHHHHHHHHHHhhc
Q 032502          116 V---GA-NKPELQKKVAAAVDS  133 (139)
Q Consensus       116 ~---g~-~~~~l~~~i~~~~~~  133 (139)
                      .   +. +.+.|.+|++.++..
T Consensus       326 ~~~~~~~~~~~i~~F~~d~~~G  347 (350)
T 1sji_A          326 PDDDDLPTAEELEDWIEDVLSG  347 (350)
T ss_dssp             SCCSCCCCHHHHHHHHHHHHTS
T ss_pred             CcccccCCHHHHHHHHHHHhcC
Confidence            2   24 899999999998764

>1aba_A Glutaredoxin; electron transport; HET: MES; 1.45A {Enterobacteria phage T4} SCOP: c.47.1.1 PDB: 1aaz_A 1de1_A 1de2_A

Probab=98.17  E-value=6e-06  Score=47.01  Aligned_cols=57  Identities=19%  Similarity=0.354  Sum_probs=41.7

Q ss_pred             EEEEeCC----CChhhhhhhHhHHHHHHhCCCcEEEEEeCC-----cch----hhhhhCCCc-----ceeEEEEEeCCeE
Q 032502           50 IANFSAT----WCGPCRMIAPFFSELSEKYPSLMFLLVDVD-----ELV----EFSTSWDIK-----ATPTFFFLKDGQQ  111 (139)
Q Consensus        50 lv~f~~~----~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~-----~~~----~~~~~~~v~-----~~Pt~~~~~~g~~  111 (139)
                      ++.|+.+    ||++|+++...|++.     ++.|-.+|++     .++    ++.+..|..     .+|++++ .+|+.
T Consensus         2 v~iY~~~~~~~~Cp~C~~ak~~L~~~-----gi~y~~idI~~~~~~~~~~~~~~l~~~~g~~~~~~~tvP~v~i-~~g~~   75 (87)
T 1aba_A            2 FKVYGYDSNIHKCGPCDNAKRLLTVK-----KQPFEFINIMPEKGVFDDEKIAELLTKLGRDTQIGLTMPQVFA-PDGSH   75 (87)
T ss_dssp             EEEEECCTTTSCCHHHHHHHHHHHHT-----TCCEEEEESCSBTTBCCHHHHHHHHHHHTCSCCTTCCSCEEEC-TTSCE
T ss_pred             EEEEEeCCCCCcCccHHHHHHHHHHc-----CCCEEEEEeeccccccCHHHHHHHHHHhCCCCCCCCccCEEEE-ECCEE
Confidence            4567899    999999999988764     5667777877     543    355667877     8998764 46664


Q ss_pred             E
Q 032502          112 V  112 (139)
Q Consensus       112 ~  112 (139)
                      +
T Consensus        76 i   76 (87)
T 1aba_A           76 I   76 (87)
T ss_dssp             E
T ss_pred             E
Confidence            3

>2h8l_A Protein disulfide-isomerase A3; thioredoxin-like fold; 2.00A {Homo sapiens}

Probab=98.17  E-value=3.7e-05  Score=52.20  Aligned_cols=98  Identities=7%  Similarity=0.109  Sum_probs=71.0

Q ss_pred             CCCceEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhC-CCcEEEEEeCCcchhhhhhCCCcce
Q 032502           22 AGGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKY-PSLMFLLVDVDELVEFSTSWDIKAT  100 (139)
Q Consensus        22 ~~~~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~-~~v~~~~vd~~~~~~~~~~~~v~~~  100 (139)
                      .+.++..+.+.++++..+    ..+++++|.|+.+||   ....+.+.++++.+ .++.|..+.   +.+++++|++.. 
T Consensus         4 ~gP~v~~l~s~~~~~~~l----~~~~v~vvgff~~~~---~~~~~~f~~~A~~lr~~~~F~~~~---~~~v~~~~~~~~-   72 (252)
T 2h8l_A            4 GSPASVPLRTEEEFKKFI----SDKDASIVGFFDDSF---SEAHSEFLKAASNLRDNYRFAHTN---VESLVNEYDDNG-   72 (252)
T ss_dssp             --CCEEECCSHHHHHHHH----TSSSCEEEEEESCTT---SHHHHHHHHHHHHTTTTSCEEEEC---CHHHHHHHCSSS-
T ss_pred             CCCCceeecCHHHHHHHh----hcCCeEEEEEECCCC---ChHHHHHHHHHHhcccCcEEEEEC---hHHHHHHhCCCC-
Confidence            345677777777777666    456788888998874   55667888888888 468887773   567889999997 


Q ss_pred             eEEEEEeCC-------eEEEEE-eCC-ChHHHHHHHHHH
Q 032502          101 PTFFFLKDG-------QQVDKL-VGA-NKPELQKKVAAA  130 (139)
Q Consensus       101 Pt~~~~~~g-------~~~~~~-~g~-~~~~l~~~i~~~  130 (139)
                      |++++|+.+       .....+ .|. +.+.|.+||...
T Consensus        73 p~i~~fk~~~~~~kf~e~~~~y~~g~~~~~~l~~fi~~~  111 (252)
T 2h8l_A           73 EGIILFRPSHLTNKFEDKTVAYTEQKMTSGKIKKFIQEN  111 (252)
T ss_dssp             EEEEEECCGGGCCTTSCSEEECCCSSCCHHHHHHHHHHH
T ss_pred             CcEEEEcchhhcccccccccccCCCCcCHHHHHHHHHhc
Confidence            999999742       112244 565 899999999875

>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10

Probab=98.15  E-value=8e-06  Score=55.05  Aligned_cols=60  Identities=17%  Similarity=0.287  Sum_probs=44.9

Q ss_pred             CEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcc---hhhhhhCCCcceeEEEEEeCCeEEE
Q 032502           47 KIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDEL---VEFSTSWDIKATPTFFFLKDGQQVD  113 (139)
Q Consensus        47 k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~---~~~~~~~~v~~~Pt~~~~~~g~~~~  113 (139)
                      ...++.|+.+||++|++....|++.     ++.+..+|++.+   .++.+.+|..++|++++  +|+.+.
T Consensus       169 ~~~i~ly~~~~Cp~C~~a~~~L~~~-----~i~~~~~~i~~~~~~~~l~~~~g~~~vP~~~~--~g~~i~  231 (241)
T 1nm3_A          169 QESISIFTKPGCPFCAKAKQLLHDK-----GLSFEEIILGHDATIVSVRAVSGRTTVPQVFI--GGKHIG  231 (241)
T ss_dssp             CCCEEEEECSSCHHHHHHHHHHHHH-----TCCCEEEETTTTCCHHHHHHHTCCSSSCEEEE--TTEEEE
T ss_pred             cceEEEEECCCChHHHHHHHHHHHc-----CCceEEEECCCchHHHHHHHHhCCCCcCEEEE--CCEEEE
Confidence            3446678899999999999998875     455666777654   34777889999999865  776543

>3bj5_A Protein disulfide-isomerase; thioredoxin fold, chaperone, endoplasmic reticulum, isomeras membrane, redox-active center; 2.20A {Homo sapiens}

Probab=98.14  E-value=0.00013  Score=45.60  Aligned_cols=89  Identities=9%  Similarity=0.075  Sum_probs=63.7

Q ss_pred             CCEEEEE-EeCCCChhhhhhhHhHHHHHHhCCC-cEEEEEeC--CcchhhhhhCCCcc--eeEEEEEeC-CeE-EEEEe-
Q 032502           46 GKIVIAN-FSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDV--DELVEFSTSWDIKA--TPTFFFLKD-GQQ-VDKLV-  116 (139)
Q Consensus        46 ~k~vlv~-f~~~~C~~C~~~~~~l~~~~~~~~~-v~~~~vd~--~~~~~~~~~~~v~~--~Pt~~~~~~-g~~-~~~~~-  116 (139)
                      +-++.++ |....-..-..+.+.+.++++++.+ +.|+.+|.  +......+.||+..  +|++.++.. +.. ..... 
T Consensus        31 ~~~~~~l~f~~~~~~~~~~~~~~~~~vAk~fkgki~Fv~vd~~~~~~~~~l~~fGl~~~~~P~v~i~~~~~~~~Ky~~~~  110 (147)
T 3bj5_A           31 EIKTHILLFLPKSVSDYDGKLSNFKTAAESFKGKILFAFIDSDHTDNQRILEFFGLKKEECPAVRLITLEEEMTKYKPES  110 (147)
T ss_dssp             SCCEEEEEECCTTSSSHHHHHHHHHHHHHTTTTTCEEEEECTTCGGGHHHHHHTTCCGGGCSEEEEEECSSSCEEECCSC
T ss_pred             CCceEEEEEecCCcHhHHHHHHHHHHHHHHcCCceEEEEEecchHhHHHHHHHcCCCcccCCEEEEEecccccccCCCCc
Confidence            4444444 4443444456688999999999985 99999999  56666788999985  899988853 222 22222 


Q ss_pred             CC-ChHHHHHHHHHHhhcc
Q 032502          117 GA-NKPELQKKVAAAVDSV  134 (139)
Q Consensus       117 g~-~~~~l~~~i~~~~~~~  134 (139)
                      +. +.+.|.+|++.+++..
T Consensus       111 ~~~t~~~i~~Fv~d~l~Gk  129 (147)
T 3bj5_A          111 EELTAERITEFCHRFLEGK  129 (147)
T ss_dssp             CCCCHHHHHHHHHHHHTTC
T ss_pred             ccCCHHHHHHHHHHHHcCC
Confidence            33 8899999999998764

>3gmf_A Protein-disulfide isomerase; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Novosphingobium aromaticivorans}

Probab=98.13  E-value=3.5e-05  Score=50.97  Aligned_cols=37  Identities=24%  Similarity=0.552  Sum_probs=30.4

Q ss_pred             hhCCCcceeEEEEEeCCeEEEEEeCC-ChHHHHHHHHHHhhcc
Q 032502           93 TSWDIKATPTFFFLKDGQQVDKLVGA-NKPELQKKVAAAVDSV  134 (139)
Q Consensus        93 ~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~i~~~~~~~  134 (139)
                      ..+||.++||+++  ||+.   +.|. +.+.|.+.|+++++.-
T Consensus       162 ~~~GV~GtPtfvv--ng~~---~~G~~~~e~l~~~i~~~~~~~  199 (205)
T 3gmf_A          162 NQYNVSGTPSFMI--DGIL---LAGTHDWASLRPQILARLNEG  199 (205)
T ss_dssp             HHHCCCSSSEEEE--TTEE---CTTCCSHHHHHHHHHHHHTC-
T ss_pred             HHcCCccCCEEEE--CCEE---EeCCCCHHHHHHHHHHHhhcc
Confidence            5679999999998  8874   4677 8999999999987654

>2in3_A Hypothetical protein; DSBA family, FRNE-like subfamily, disulfide isomerase, struc genomics, PSI-2, protein structure initiative; 1.85A {Nitrosomonas europaea}

Probab=98.13  E-value=9.7e-05  Score=48.72  Aligned_cols=43  Identities=12%  Similarity=0.175  Sum_probs=36.6

Q ss_pred             hhhCCCcceeEEEEEeCCeEEEEEeCC-ChHHHHHHHHHHhhcc
Q 032502           92 STSWDIKATPTFFFLKDGQQVDKLVGA-NKPELQKKVAAAVDSV  134 (139)
Q Consensus        92 ~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~i~~~~~~~  134 (139)
                      +.++||.++||++++.||+.+....|. +.+.|.+.|+++++..
T Consensus       169 a~~~gv~g~Pt~~i~~~G~~~~~~~G~~~~~~l~~~l~~~~~~~  212 (216)
T 2in3_A          169 VAQWGISGFPALVVESGTDRYLITTGYRPIEALRQLLDTWLQQH  212 (216)
T ss_dssp             HHHTTCCSSSEEEEEETTEEEEEESSCCCHHHHHHHHHHHHHHC
T ss_pred             HHHcCCcccceEEEEECCEEEEeccCCCCHHHHHHHHHHHHHhc
Confidence            446899999999999999977777888 8999999999988753

>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A

Probab=98.09  E-value=4.6e-05  Score=54.58  Aligned_cols=89  Identities=12%  Similarity=0.182  Sum_probs=69.7

Q ss_pred             CCEEEEEEeCCCChhhhhhhHhHHHHHHhCCC---cEEEEEeCCcchhh----hhhCCCc-ceeEEEEEeC--Ce-EEEE
Q 032502           46 GKIVIANFSATWCGPCRMIAPFFSELSEKYPS---LMFLLVDVDELVEF----STSWDIK-ATPTFFFLKD--GQ-QVDK  114 (139)
Q Consensus        46 ~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~---v~~~~vd~~~~~~~----~~~~~v~-~~Pt~~~~~~--g~-~~~~  114 (139)
                      .++.++.|+..+|+.|..+.+.++++++++.+   +.|+.+|.+..+..    .+.||+. ..|+++++..  ++ ....
T Consensus       247 ~~~~~~~f~~~~~~~~~~~~~~l~~vA~~~~~~~ki~F~~id~~~~~~~l~~~~~~fgl~~~~P~~~i~~~~~~~~~~y~  326 (367)
T 3us3_A          247 DGIHIVAFAEEADPDGYEFLEILKSVAQDNTDNPDLSIIWIDPDDFPLLVPYWEKTFDIDLSAPQIGVVNVTDADSVWME  326 (367)
T ss_dssp             TTEEEEEECCTTSHHHHHHHHHHHHHHHHTTTCTTCCEEEECGGGCTTTHHHHHHHHTCCTTSCEEEEEETTTCCEEECC
T ss_pred             CCcEEEEEEcCCChhHHHHHHHHHHHHHHcCCCCceEEEEECCccchhHHHHHHHhcCCCCCCCeEEEEecccccceeec
Confidence            35677789999999999999999999999985   99999999987644    3458887 8999999853  32 2222


Q ss_pred             EeC---C-ChHHHHHHHHHHhhcc
Q 032502          115 LVG---A-NKPELQKKVAAAVDSV  134 (139)
Q Consensus       115 ~~g---~-~~~~l~~~i~~~~~~~  134 (139)
                      +.+   . +.+.|.+|++.+++..
T Consensus       327 ~~~~~~~~t~~~i~~F~~~~~~Gk  350 (367)
T 3us3_A          327 MDDEEDLPSAEELEDWLEDVLEGE  350 (367)
T ss_dssp             CCTTSCCCCHHHHHHHHHHHHHTS
T ss_pred             CCcccccCCHHHHHHHHHHHHcCC
Confidence            333   3 8999999999988764

>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens}

Probab=97.93  E-value=0.00023  Score=51.16  Aligned_cols=91  Identities=11%  Similarity=-0.014  Sum_probs=68.4

Q ss_pred             hCCCEEEEEEeCCCCh-hhhhhhHhHHHHHHhCC-CcEEEEEeCCcchhhhhhCCCc--ceeEEEEEeCCeEEEEEe---
Q 032502           44 KEGKIVIANFSATWCG-PCRMIAPFFSELSEKYP-SLMFLLVDVDELVEFSTSWDIK--ATPTFFFLKDGQQVDKLV---  116 (139)
Q Consensus        44 ~~~k~vlv~f~~~~C~-~C~~~~~~l~~~~~~~~-~v~~~~vd~~~~~~~~~~~~v~--~~Pt~~~~~~g~~~~~~~---  116 (139)
                      ..++++++.|+.++|. .+..+...+.+++.++. .+.|+.+|.+....+.+.||+.  ..|.++++..++. ..+.   
T Consensus       234 ~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~f~~id~~~~~~~~~~~gl~~~~~P~i~i~~~~~~-y~~~~~~  312 (382)
T 2r2j_A          234 EEGLPFLILFHMKEDTESLEIFQNEVARQLISEKGTINFLHADCDKFRHPLLHIQKTPADCPVIAIDSFRHM-YVFGDFK  312 (382)
T ss_dssp             TTCCCEEEEEECTTCCHHHHHHHHHHHHHTGGGTTTSEEEEEETTTTHHHHHHTTCCGGGCSEEEEECSSCE-EECCCSG
T ss_pred             cCCCcEEEEEecCCchHHHHHHHHHHHHHHHHhCCeeEEEEEchHHhHHHHHHcCCCccCCCEEEEEcchhc-CCCCccc
Confidence            3577888999998874 45666677777766665 4999999999988889999997  6899988855443 2232   


Q ss_pred             CC-ChHHHHHHHHHHhhccC
Q 032502          117 GA-NKPELQKKVAAAVDSVV  135 (139)
Q Consensus       117 g~-~~~~l~~~i~~~~~~~~  135 (139)
                      +. +.+.|.+|++.++....
T Consensus       313 ~~~~~~~i~~F~~d~~~Gkl  332 (382)
T 2r2j_A          313 DVLIPGKLKQFVFDLHSGKL  332 (382)
T ss_dssp             GGGSTTHHHHHHHHHHHTTT
T ss_pred             cccCHHHHHHHHHHHHCCCc
Confidence            22 56889999999887643

>3ec3_A Protein disulfide-isomerase A4; thioredoxin-like fold, endoplasmic reticulum, glycoprotein, redox-active center; 1.92A {Rattus norvegicus}

Probab=97.92  E-value=0.00013  Score=49.47  Aligned_cols=98  Identities=7%  Similarity=0.052  Sum_probs=70.8

Q ss_pred             CCCceEEeechhHHHHHHHHHhhC-CCEEEEEEeCCCChhhhhhhHhHHHHHHhC-CCcEEEEEeCCcchhhhhhCCCcc
Q 032502           22 AGGNVSLVTTKDIWDQKMSEASKE-GKIVIANFSATWCGPCRMIAPFFSELSEKY-PSLMFLLVDVDELVEFSTSWDIKA   99 (139)
Q Consensus        22 ~~~~~~~i~~~~~~~~~~~~~~~~-~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~-~~v~~~~vd~~~~~~~~~~~~v~~   99 (139)
                      .|.++..+.+.++++..+.    . +++++|.|+.++|   ....+.+.++++.+ .++.|....   +.+++++|++..
T Consensus         4 ~gP~v~~l~s~~~~~~~~~----~~~~v~vVgff~~~~---~~~~~~F~~~A~~lr~~~~F~~t~---~~~v~~~~~v~~   73 (250)
T 3ec3_A            4 GSPPSKEILTLKQVQEFLK----DGDDVVILGVFQGVG---DPGYLQYQDAANTLREDYKFHHTF---STEIAKFLKVSL   73 (250)
T ss_dssp             -CCSSEECCCHHHHHHHHH----HCSSCEEEEECSCTT---CHHHHHHHHHHHHHTTTCCEEEEC---CHHHHHHHTCCS
T ss_pred             CCCCceecCCHHHHHHHHh----cCCCeEEEEEEcCCC---chHHHHHHHHHHhhhcCcEEEEEC---cHHHHHHcCCCC
Confidence            3456777888888877663    3 6788899999875   56777888888887 468887763   567788899987


Q ss_pred             eeEEEEEeCC-------eEEEEEe--CC-ChHHHHHHHHHH
Q 032502          100 TPTFFFLKDG-------QQVDKLV--GA-NKPELQKKVAAA  130 (139)
Q Consensus       100 ~Pt~~~~~~g-------~~~~~~~--g~-~~~~l~~~i~~~  130 (139)
                       |++++|+.+       .....+.  |. +.+.|.+||...
T Consensus        74 -p~ivlfk~~~~~~kfde~~~~y~g~~~~~~~~l~~fi~~~  113 (250)
T 3ec3_A           74 -GKLVLMQPEKFQSKYEPRMHVMDVQGSTEASAIKDYVVKH  113 (250)
T ss_dssp             -SEEEEECCGGGCCTTSCSCEEEECCTTSCHHHHHHHHHHH
T ss_pred             -CeEEEEecchhhccccccceeccCCCCCCHHHHHHHHHHc
Confidence             999999631       1112334  34 889999999875

>1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding, glutaredoxin, thioredoxin fold, crystallography, protein binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A

Probab=97.83  E-value=4.1e-05  Score=46.35  Aligned_cols=58  Identities=19%  Similarity=0.205  Sum_probs=39.9

Q ss_pred             EEEEEeCCCChhhh------hhhHhHHHHHHhCCCcEEEEEeCCcchh----hhhhC--------CCcceeEEEEEeCCe
Q 032502           49 VIANFSATWCGPCR------MIAPFFSELSEKYPSLMFLLVDVDELVE----FSTSW--------DIKATPTFFFLKDGQ  110 (139)
Q Consensus        49 vlv~f~~~~C~~C~------~~~~~l~~~~~~~~~v~~~~vd~~~~~~----~~~~~--------~v~~~Pt~~~~~~g~  110 (139)
                      ||+.|++++|++|.      ++...|...     +|.|-.+|++.+++    +.++.        |...+|.+++  +++
T Consensus         1 ~V~vYtt~~c~~c~~kk~c~~aK~lL~~k-----gV~feEidI~~d~~~r~eM~~~~~~~~~~~~G~~tvPQIFi--~~~   73 (121)
T 1u6t_A            1 VIRVYIASSSGSTAIKKKQQDVLGFLEAN-----KIGFEEKDIAANEENRKWMRENVPENSRPATGYPLPPQIFN--ESQ   73 (121)
T ss_dssp             CEEEEECTTCSCHHHHHHHHHHHHHHHHT-----TCCEEEEECTTCHHHHHHHHHHSCGGGSCSSSSCCSCEEEE--TTE
T ss_pred             CEEEEecCCCCCccchHHHHHHHHHHHHC-----CCceEEEECCCCHHHHHHHHHhccccccccCCCcCCCEEEE--CCE
Confidence            35667899999994      444443322     78899999986643    45566        7778887776  776


Q ss_pred             EEE
Q 032502          111 QVD  113 (139)
Q Consensus       111 ~~~  113 (139)
                      .+.
T Consensus        74 ~iG   76 (121)
T 1u6t_A           74 YRG   76 (121)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            544

>3tdg_A DSBG, putative uncharacterized protein; thioredoxin fold, reductase, oxidoreductase; HET: P6G; 2.10A {Helicobacter pylori}

Probab=97.76  E-value=5.3e-05  Score=52.10  Aligned_cols=39  Identities=10%  Similarity=0.222  Sum_probs=30.4

Q ss_pred             CCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEe
Q 032502           45 EGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVD   84 (139)
Q Consensus        45 ~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd   84 (139)
                      .++.+|+.|+-+.||+|+++.+.+.+..+. ..|+++.+.
T Consensus       146 ~gk~~I~vFtDp~CPYCkkl~~~l~~~l~~-~~Vr~i~~P  184 (273)
T 3tdg_A          146 NKDKILYIVSDPMCPHCQKELTKLRDHLKE-NTVRMVVVG  184 (273)
T ss_dssp             GTTCEEEEEECTTCHHHHHHHHTHHHHHHH-CEEEEEECC
T ss_pred             CCCeEEEEEECcCChhHHHHHHHHHHHhhC-CcEEEEEee
Confidence            367889999999999999999999966655 345555443

>2jad_A Yellow fluorescent protein glutaredoxin fusion protein; electron transport, redox- active center, yeast, GRX1P, transport; HET: PIA; 2.7A {Aequorea victoria}

Probab=97.73  E-value=3.2e-05  Score=55.15  Aligned_cols=73  Identities=15%  Similarity=0.287  Sum_probs=44.3

Q ss_pred             HHHHHHhhCCCEEEEEEeCCCChhhhhhhH-hHHHHHHhCCCcEEEEEeC-Ccc----hhhhhhCCCcceeEEEEEeCCe
Q 032502           37 QKMSEASKEGKIVIANFSATWCGPCRMIAP-FFSELSEKYPSLMFLLVDV-DEL----VEFSTSWDIKATPTFFFLKDGQ  110 (139)
Q Consensus        37 ~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~-~l~~~~~~~~~v~~~~vd~-~~~----~~~~~~~~v~~~Pt~~~~~~g~  110 (139)
                      ..+.......+  |+.|..+||++|.+... .|++..-.|..+.++.+|- ++.    ..+.+..|...+|.+++  +|+
T Consensus       252 ~~V~~lI~~~~--VvVYsk~~CPyC~~Ak~~LL~~~gV~y~eidVlEld~~~~~~e~~~~L~~~tG~~TVPqVFI--~Gk  327 (362)
T 2jad_A          252 KHVKDLIAENE--IFVASKTYCPYSHAALNTLFEKLKVPRSKVLVLQLNDMKEGADIQAALYEINGQRTVPNIYI--NGK  327 (362)
T ss_dssp             HHHHHHHHTCS--EEEEECTTCHHHHHHHHHHHTTTCCCTTTEEEEEGGGSTTHHHHHHHHHHHHCCCSSCEEEE--TTE
T ss_pred             HHHHHHhccCC--EEEEEcCCCcchHHHHHHHHHHcCCCcceEEEEEeccccCCHHHHHHHHHHHCCCCcCEEEE--CCE
Confidence            34444434444  45588999999999876 5655533343344444332 222    33455678999999876  787


Q ss_pred             EEE
Q 032502          111 QVD  113 (139)
Q Consensus       111 ~~~  113 (139)
                      .+.
T Consensus       328 ~IG  330 (362)
T 2jad_A          328 HIG  330 (362)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            543

>2wul_A Glutaredoxin related protein 5; chromosome 14 open reading frame 87, oxidoreductase, thiored family, GLRX5, FLB4739; HET: GSH; 2.40A {Homo sapiens}

Probab=97.71  E-value=7.1e-05  Score=45.15  Aligned_cols=51  Identities=14%  Similarity=0.250  Sum_probs=36.7

Q ss_pred             CCChhhhhhhHhHHHHHHhCCCc-EEEEEeCCcchhhh----hhCCCcceeEEEEEeCCeEEE
Q 032502           56 TWCGPCRMIAPFFSELSEKYPSL-MFLLVDVDELVEFS----TSWDIKATPTFFFLKDGQQVD  113 (139)
Q Consensus        56 ~~C~~C~~~~~~l~~~~~~~~~v-~~~~vd~~~~~~~~----~~~~v~~~Pt~~~~~~g~~~~  113 (139)
                      |.|++|.+....|...     ++ .|..+|++.++++.    +.-+-+.+|.+++  +|+.+.
T Consensus        33 P~C~fc~~ak~lL~~~-----gv~~~~~~~v~~~~~~r~~l~~~sg~~TvPqIFI--~g~~IG   88 (118)
T 2wul_A           33 PQCGFSNAVVQILRLH-----GVRDYAAYNVLDDPELRQGIKDYSNWPTIPQVYL--NGEFVG   88 (118)
T ss_dssp             BSSHHHHHHHHHHHHT-----TCCSCEEEETTSCHHHHHHHHHHHTCCSSCEEEE--TTEEEE
T ss_pred             CCCHHHHHHHHHHHHh-----CCcCeEeecccCCHHHHHHHHHhccCCCCCeEeE--CCEEEC
Confidence            5799999999888654     44 36777887776543    3346678999877  887664

>2h8l_A Protein disulfide-isomerase A3; thioredoxin-like fold; 2.00A {Homo sapiens}

Probab=97.57  E-value=0.00031  Score=47.63  Aligned_cols=88  Identities=10%  Similarity=0.115  Sum_probs=62.0

Q ss_pred             CCEEEEEEeCCCCh---hh-hhhhHhHHHHHHhCC-C---cEEEEEeCCcchhhhhhCCC----cceeEEEEE-eCCeEE
Q 032502           46 GKIVIANFSATWCG---PC-RMIAPFFSELSEKYP-S---LMFLLVDVDELVEFSTSWDI----KATPTFFFL-KDGQQV  112 (139)
Q Consensus        46 ~k~vlv~f~~~~C~---~C-~~~~~~l~~~~~~~~-~---v~~~~vd~~~~~~~~~~~~v----~~~Pt~~~~-~~g~~~  112 (139)
                      +.++++.|+...+.   .+ ..+...+.++++++. .   +.|+.+|.+....+.+.||+    ...|.++++ .+++ .
T Consensus       129 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~vA~~~~~k~~~~~F~~~d~~~~~~~~~~fgl~~~~~~~P~v~i~~~~~~-k  207 (252)
T 2h8l_A          129 GKDLLIAYYDVDYEKNAKGSNYWRNRVMMVAKKFLDAGHKLNFAVASRKTFSHELSDFGLESTAGEIPVVAIRTAKGE-K  207 (252)
T ss_dssp             SSSEEEEEECCBTTTBHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEETTTTHHHHGGGTCCCCSCSSCEEEEECTTSC-E
T ss_pred             CCCeEEEEeecchhhcchhHHHHHHHHHHHHHHccccCceEEEEEEchHHHHHHHHHcCCCCccCCCCEEEEEeCcCc-E
Confidence            34556666654332   12 246777888888875 2   99999999988888999999    368999988 4343 3


Q ss_pred             EEEeCC-ChHH--HHHHHHHHhhcc
Q 032502          113 DKLVGA-NKPE--LQKKVAAAVDSV  134 (139)
Q Consensus       113 ~~~~g~-~~~~--l~~~i~~~~~~~  134 (139)
                      ..+.+. +.+.  |.+|++.++...
T Consensus       208 y~~~~~~t~~~~~i~~F~~~~~~Gk  232 (252)
T 2h8l_A          208 FVMQEEFSRDGKALERFLQDYFDGN  232 (252)
T ss_dssp             EECCSCCCTTSHHHHHHHHHHHHTC
T ss_pred             ecCCcccCcchHHHHHHHHHHHCCC
Confidence            334344 6677  999999998653

>3ec3_A Protein disulfide-isomerase A4; thioredoxin-like fold, endoplasmic reticulum, glycoprotein, redox-active center; 1.92A {Rattus norvegicus}

Probab=97.57  E-value=0.0013  Score=44.54  Aligned_cols=89  Identities=9%  Similarity=0.149  Sum_probs=63.8

Q ss_pred             CCEEEEEEeCC-CC---hh-hhhhhHhHHHHHHhCCCcEEEEEeCCcchhhhhhCCCcc--e-eEEEEEeCCeEEEEEe-
Q 032502           46 GKIVIANFSAT-WC---GP-CRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKA--T-PTFFFLKDGQQVDKLV-  116 (139)
Q Consensus        46 ~k~vlv~f~~~-~C---~~-C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~--~-Pt~~~~~~g~~~~~~~-  116 (139)
                      +++.++.|+.. .+   .. ...+...+.++++++..+.|+.+|.++.....+.||+..  . |.++++........+. 
T Consensus       132 ~~~l~~~~~~~d~~~~~~~~~~~~~~~~~~vAk~~kki~F~~~d~~~~~~~l~~fgl~~~~~~p~~~~~~~~~~ky~~~~  211 (250)
T 3ec3_A          132 KRPLVVVYYSVDFSFDYRTATQFWRNKVLEVAKDFPEYTFAIADEEDYATEVKDLGLSESGGDVNAAILDESGKKFAMEP  211 (250)
T ss_dssp             SSSEEEEEECCCCSTTTHHHHHHHHHHHHHHHTTCTTSEEEEEETTTTHHHHHHTTCSSCSCSCEEEEECTTSCEEECCC
T ss_pred             cCccEEEEEecccccccchhHHHHHHHHHHHHHhhcceeEEEEcHHHHHHHHHHcCCCccCCCcEEEEEcCCCceecCCc
Confidence            56666667653 22   33 345788999999999889999999998887888999863  3 4666663333333333 


Q ss_pred             CC-ChHHHHHHHHHHhhcc
Q 032502          117 GA-NKPELQKKVAAAVDSV  134 (139)
Q Consensus       117 g~-~~~~l~~~i~~~~~~~  134 (139)
                      +. +.+.|.+|++.++...
T Consensus       212 ~~~t~~~i~~Fv~~~~~Gk  230 (250)
T 3ec3_A          212 EEFDSDALREFVMAFKKGK  230 (250)
T ss_dssp             CSCCHHHHHHHHHHHHTTC
T ss_pred             ccCCHHHHHHHHHHHHCCC
Confidence            33 8999999999988764

>2kok_A Arsenate reductase; brucellosis, zoonotic, oxidoreductase, S genomics, seattle structural genomics center for infectious ssgcid; NMR {Brucella abortus}

Probab=97.49  E-value=0.00077  Score=40.62  Aligned_cols=34  Identities=6%  Similarity=0.230  Sum_probs=26.6

Q ss_pred             EEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcc
Q 032502           50 IANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDEL   88 (139)
Q Consensus        50 lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~   88 (139)
                      +..|+.++|++|++....|++.     ++.|-.+|+.++
T Consensus         7 i~iY~~~~C~~C~ka~~~L~~~-----gi~y~~~di~~~   40 (120)
T 2kok_A            7 VTIYGIKNCDTMKKARIWLEDH-----GIDYTFHDYKKE   40 (120)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHH-----TCCEEEEEHHHH
T ss_pred             EEEEECCCChHHHHHHHHHHHc-----CCcEEEEeeeCC
Confidence            5567899999999999988775     666777777543

>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens}

Probab=97.26  E-value=0.0011  Score=44.56  Aligned_cols=94  Identities=12%  Similarity=0.097  Sum_probs=56.7

Q ss_pred             hhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhhhhhCCCcceeEEEEE-eCCe
Q 032502           32 KDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFL-KDGQ  110 (139)
Q Consensus        32 ~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~-~~g~  110 (139)
                      .+++...+..  ...+++.+.|....|..++...-   ++. .++++.+..++ +.+..++++|||.++|+++++ .+|+
T Consensus       145 ~~~l~~~~~~--~~~~~~al~f~~~~~~~~~~~~~---d~~-~~~~i~v~~~~-~~~~~l~~~f~v~~~Pslvl~~~~g~  217 (244)
T 3q6o_A          145 LEEIDGFFAR--NNEEYLALIFEXGGSYLAREVAL---DLS-QHKGVAVRRVL-NTEANVVRKFGVTDFPSCYLLFRNGS  217 (244)
T ss_dssp             HHHHHTHHHH--CCCSEEEEEEECTTCCHHHHHHH---HTT-TCTTEEEEEEE-TTCHHHHHHHTCCCSSEEEEEETTSC
T ss_pred             HHHHHHHhhc--CCCceEEEEEEECCcchHHHHHH---Hhc-cCCceEEEEEe-CchHHHHHHcCCCCCCeEEEEeCCCC
Confidence            3444444432  34578888888776543333221   111 12346654444 456889999999999999888 6777


Q ss_pred             EEEEEeCC-ChHHHHHHHHHHhh
Q 032502          111 QVDKLVGA-NKPELQKKVAAAVD  132 (139)
Q Consensus       111 ~~~~~~g~-~~~~l~~~i~~~~~  132 (139)
                      ........ +.+.+..+|+++.+
T Consensus       218 ~~~~~~~~~~r~~~~~~l~~~~~  240 (244)
T 3q6o_A          218 VSRVPVLMESRSFYTAYLQRLSG  240 (244)
T ss_dssp             EEECCCSSSSHHHHHHHHHTC--
T ss_pred             eEeeccccccHHHHHHHHHhCCC
Confidence            76655444 66666666665543

>2imf_A HCCA isomerase, 2-hydroxychromene-2-carboxylate isomerase; glutathione, KGST, kappa GST, transferase; HET: GSH TOM CXS; 1.30A {Pseudomonas putida} PDB: 2ime_A* 2imd_A*

Probab=97.18  E-value=0.0028  Score=41.41  Aligned_cols=38  Identities=13%  Similarity=0.177  Sum_probs=30.0

Q ss_pred             hhhCCCcceeEEEEEeCCeEEEEEeCC-ChHHHHHHHHHHhhcc
Q 032502           92 STSWDIKATPTFFFLKDGQQVDKLVGA-NKPELQKKVAAAVDSV  134 (139)
Q Consensus        92 ~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~i~~~~~~~  134 (139)
                      +..+||.++|++++  +|+   .+.|. ..+.|.+.|.+.....
T Consensus       160 a~~~Gv~G~Ptfvi--~g~---~~~G~~~~~~l~~~l~~~~~~~  198 (203)
T 2imf_A          160 AIERKVFGVPTMFL--GDE---MWWGNDRLFMLESAMGRLCRQN  198 (203)
T ss_dssp             HHHTTCCSSSEEEE--TTE---EEESGGGHHHHHHHHHHHHHHH
T ss_pred             HHHCCCCcCCEEEE--CCE---EEECCCCHHHHHHHHhcccccc
Confidence            44689999999998  786   45688 7888999888876554

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=97.15  E-value=0.0012  Score=50.05  Aligned_cols=57  Identities=21%  Similarity=0.449  Sum_probs=40.0

Q ss_pred             EEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcc---h----hhhhhCCCcceeEEEEEeCCeEEE
Q 032502           50 IANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDEL---V----EFSTSWDIKATPTFFFLKDGQQVD  113 (139)
Q Consensus        50 lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~---~----~~~~~~~v~~~Pt~~~~~~g~~~~  113 (139)
                      ++.|+.+||++|......|.+.     ++.+-.+|++..   .    .+.+..+...+|.+++  +|+.+.
T Consensus        20 v~vy~~~~Cp~C~~~k~~L~~~-----~i~~~~~dv~~~~~~~~~~~~l~~~~g~~tvP~v~i--~g~~ig   83 (598)
T 2x8g_A           20 VILFSKTTCPYCKKVKDVLAEA-----KIKHATIELDQLSNGSAIQKCLASFSKIETVPQMFV--RGKFIG   83 (598)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT-----TCCCEEEEGGGSTTHHHHHHHTHHHHSCCCSCEEEE--TTEEEE
T ss_pred             EEEEECCCChhHHHHHHHHHHC-----CCCcEEEEcccCcchHHHHHHHHHHhCCceeCEEEE--CCEEEE
Confidence            5669999999999999998865     444556666542   2    2333567889998854  776554

>1rw1_A Conserved hypothetical protein YFFB; thioredoxin fold, structure 2 function project, S2F, structu genomics, unknown function; HET: MSE IPA; 1.02A {Pseudomonas aeruginosa} SCOP: c.47.1.12

Probab=97.11  E-value=0.0014  Score=39.06  Aligned_cols=34  Identities=9%  Similarity=0.241  Sum_probs=26.5

Q ss_pred             EEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcc
Q 032502           50 IANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDEL   88 (139)
Q Consensus        50 lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~   88 (139)
                      +..|+.++|++|++....|++.     ++.|-.+|+.++
T Consensus         2 i~iY~~~~C~~C~kak~~L~~~-----gi~~~~~di~~~   35 (114)
T 1rw1_A            2 YVLYGIKACDTMKKARTWLDEH-----KVAYDFHDYKAV   35 (114)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHT-----TCCEEEEEHHHH
T ss_pred             EEEEECCCChHHHHHHHHHHHC-----CCceEEEeecCC
Confidence            4567899999999999888763     677777777643

>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae}

Probab=97.07  E-value=0.0054  Score=42.61  Aligned_cols=105  Identities=14%  Similarity=0.212  Sum_probs=68.6

Q ss_pred             cCCCceEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCC-CcEEEEEeCCcchhhh--hhCC-
Q 032502           21 FAGGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP-SLMFLLVDVDELVEFS--TSWD-   96 (139)
Q Consensus        21 ~~~~~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~-~v~~~~vd~~~~~~~~--~~~~-   96 (139)
                      ..+..+..+.+.++++..+.   ..+++++++|...     ....+.+.+++..+. .+.|+.++-.+...+.  ++|+ 
T Consensus       140 ~~~~~v~~i~~~~~l~~~l~---~~~~~~vi~fs~~-----~~~~~~f~~~A~~~~~~~~F~~v~~~~~a~~~~~~~~~~  211 (298)
T 3ed3_A          140 RIRSYVKKFVRIDTLGSLLR---KSPKLSVVLFSKQ-----DKISPVYKSIALDWLGKFDFYSISNKKLKQLTDMNPTYE  211 (298)
T ss_dssp             TCCCCEEECSCGGGHHHHHT---SCSSEEEEEEESS-----SSCCHHHHHHHHHTBTTEEEEEEEGGGCCCCCTTCTTST
T ss_pred             hcccccEEcCCHHHHHHHHh---cCCceEEEEEcCC-----CcchHHHHHHHHHhhcCcEEEEEcchHhhhhhhhhhhcc
Confidence            34456777777787876664   2357777777432     234578889998885 5999988855433222  3333 


Q ss_pred             ----C-------------cceeEEEEEeC-CeEEEEEeC-C-ChHHHHHHHHHHhhc
Q 032502           97 ----I-------------KATPTFFFLKD-GQQVDKLVG-A-NKPELQKKVAAAVDS  133 (139)
Q Consensus        97 ----v-------------~~~Pt~~~~~~-g~~~~~~~g-~-~~~~l~~~i~~~~~~  133 (139)
                          |             ...|++++|+. ......+.| . +.++|.+||.+....
T Consensus       212 ~~p~i~~~~~~~~~~~~~~~~P~lv~~~~~~~~~~~y~g~~~~~~~i~~fi~~~~~~  268 (298)
T 3ed3_A          212 KTPEIFKYLQKVIPEQRQSDKSKLVVFDADKDKFWEYEGNSINKNDISKFLRDTFSI  268 (298)
T ss_dssp             TCHHHHHHHHHHHHHHTTCSSCEEEEEETTTTEEEECCCSSCCHHHHHHHHHHHHTC
T ss_pred             cCcchhhhhhcccccccccCCCeEEEEcCCCCceEEeccccCCHHHHHHHHHhhcCC
Confidence                2             56899999953 344445554 4 899999999865544

>1t4y_A Adaptive-response sensory-kinase SASA; alpha/beta protein, thioredoxin fold, transferase; NMR {Synechococcus elongatus} SCOP: c.47.1.15 PDB: 1t4z_A

Probab=96.89  E-value=0.015  Score=33.87  Aligned_cols=82  Identities=9%  Similarity=0.132  Sum_probs=65.9

Q ss_pred             EEEEEeCCCChhhhhhhHhHHHHHHhCC---CcEEEEEeCCcchhhhhhCCCcceeEEEEEeCCeEEEEEeCC-ChHHHH
Q 032502           49 VIANFSATWCGPCRMIAPFFSELSEKYP---SLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGA-NKPELQ  124 (139)
Q Consensus        49 vlv~f~~~~C~~C~~~~~~l~~~~~~~~---~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~l~  124 (139)
                      ....|.+..-+.+......+.++.+.+.   .+.+-.||+.+++++++.+.|-.+||++-.-- .++.++.|. =.++|+
T Consensus        13 L~lLyvag~tp~S~~ai~nL~~i~e~~l~~~~y~LeVIDv~eqPeLAE~~~IvATPTLIK~~P-~P~rriiGd~i~~ql~   91 (105)
T 1t4y_A           13 LLLQLFVDTRPLSQHIVQRVKNILAAVEATVPISLQVINVADQPQLVEYYRLVVTPALVKIGP-GSRQVLSGIDLTDQLA   91 (105)
T ss_dssp             EEEEEEECSCHHHHHHHHHHHHHHHHHCCSSCEEEEEEETTTCHHHHHHTTCCSSSEEEEEES-SSCEEEESSCHHHHHH
T ss_pred             hheeeEeCCCccHHHHHHHHHHHHHHhccCCceEEEEeecccCHHHHhHcCeeeccHhhccCC-CCceEEeChHHHHHHH
Confidence            4446778888999999999988876654   48888999999999999999999999998733 455677888 467777


Q ss_pred             HHHHHHh
Q 032502          125 KKVAAAV  131 (139)
Q Consensus       125 ~~i~~~~  131 (139)
                      .|.-+..
T Consensus        92 ~wwprWq   98 (105)
T 1t4y_A           92 NQLPQWL   98 (105)
T ss_dssp             HHHHHHH
T ss_pred             HHhHHHH
Confidence            7776654

>3gn3_A Putative protein-disulfide isomerase; MCSG, PSI, structural GEN protein structure initiative, midwest center for structural genomics; 2.50A {Pseudomonas syringae PV}

Probab=96.84  E-value=0.0026  Score=41.10  Aligned_cols=41  Identities=10%  Similarity=0.002  Sum_probs=32.2

Q ss_pred             CCCEEEEEEeCCCChhhhhhhHhHHHHHHhC-C-CcEEEEEeC
Q 032502           45 EGKIVIANFSATWCGPCRMIAPFFSELSEKY-P-SLMFLLVDV   85 (139)
Q Consensus        45 ~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~-~-~v~~~~vd~   85 (139)
                      ..+++|+.|....||+|+++.+.+..+.+++ + +++|+.-+.
T Consensus        13 ~a~vtiv~f~D~~Cp~C~~~~~~~~~~l~~~~~g~v~~v~r~~   55 (182)
T 3gn3_A           13 HGPRLFEVFLEPTCPFSVKAFFKLDDLLAQAGEDNVTVRIRLQ   55 (182)
T ss_dssp             CCSEEEEEEECTTCHHHHHHHTTHHHHHHHHCTTTEEEEEEEC
T ss_pred             CCCEEEEEEECCCCHhHHHHHHHHHHHHHHhCCCCEEEEEEEc
Confidence            3578899999999999999999997776664 5 477765554

>3kgk_A Arsenical resistance operon trans-acting represso; alpha+beta, chaperone, DNA-binding, RE transcription, transcription regulation; 1.40A {Escherichia coli} PDB: 3mwh_A

Probab=96.57  E-value=0.016  Score=34.21  Aligned_cols=50  Identities=14%  Similarity=0.189  Sum_probs=41.1

Q ss_pred             CcEEEEEeCCcch----------hhhhhCCCcceeEEEEEeCCeEEEEEeCCChHHHHHHHH
Q 032502           77 SLMFLLVDVDELV----------EFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKVA  128 (139)
Q Consensus        77 ~v~~~~vd~~~~~----------~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~l~~~i~  128 (139)
                      ++.+.+.|..+++          ++..++|+..+|.+++  ||+++..-...+.++|.+++.
T Consensus        40 Gi~V~RyNL~~~P~aF~~N~~V~~~L~~~G~~~LP~~~V--DGevv~~G~yPt~eEl~~~lg   99 (110)
T 3kgk_A           40 GVQIERFNLAQQPMSFVQNEKVKAFIEASGAEGLPLLLL--DGETVMAGRYPKRAELARWFG   99 (110)
T ss_dssp             TCCEEEEETTTCTTHHHHSHHHHHHHHHHCGGGCCEEEE--TTEEEEESSCCCHHHHHHHHT
T ss_pred             CCeEEEEccccChHHHhcCHHHHHHHHHcCcccCCEEEE--CCEEEEeccCCCHHHHHHHhC
Confidence            7889999998776          4567799999999999  999988743349999998865

>3ktb_A Arsenical resistance operon trans-acting represso; alpha-beta-alpha sandwich, helix-turn-helix, structural GENO PSI-2; 2.10A {Bacteroides vulgatus}

Probab=96.41  E-value=0.016  Score=34.06  Aligned_cols=58  Identities=10%  Similarity=0.158  Sum_probs=43.6

Q ss_pred             HhHHHHHHhCCCcEEEEEeCCcch----------hhhhhCCCcceeEEEEEeCCeEEEEEeCCChHHHHHHH
Q 032502           66 PFFSELSEKYPSLMFLLVDVDELV----------EFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKV  127 (139)
Q Consensus        66 ~~l~~~~~~~~~v~~~~vd~~~~~----------~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~l~~~i  127 (139)
                      ..+..+.+  .++.+.+.|..+++          ++..++|+..+|.+++  ||+++..-..++.++|.+++
T Consensus        34 ~~~~~lk~--~Gi~V~RyNL~~~P~~F~~N~~V~~~L~~~G~~~LP~~~V--DGevv~~G~yPt~eEl~~~l  101 (106)
T 3ktb_A           34 VVIESLKK--QGIIVTRHNLRDEPQVYVSNKTVNDFLQKHGADALPITLV--DGEIAVSQTYPTTKQMSEWT  101 (106)
T ss_dssp             HHHHHHHH--TTCCCEEEETTTCTTHHHHSHHHHHHHHTTCGGGCSEEEE--TTEEEECSSCCCHHHHHHHH
T ss_pred             HHHHHHHH--CCCEEEEEccccChHHHhcCHHHHHHHHHcCcccCCEEEE--CCEEEEeccCCCHHHHHHHh
Confidence            33344443  37888899998776          4566899999999999  99988763333899998876

>1z3e_A Regulatory protein SPX; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: c.47.1.12 PDB: 3gfk_A 3ihq_A

Probab=96.08  E-value=0.0059  Score=37.30  Aligned_cols=34  Identities=15%  Similarity=0.393  Sum_probs=27.3

Q ss_pred             EEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcc
Q 032502           50 IANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDEL   88 (139)
Q Consensus        50 lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~   88 (139)
                      +..|+.++|++|+.....|.+.     ++.|-.+|++++
T Consensus         3 i~lY~~~~C~~C~ka~~~L~~~-----gi~y~~~di~~~   36 (132)
T 1z3e_A            3 VTLYTSPSCTSCRKARAWLEEH-----EIPFVERNIFSE   36 (132)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT-----TCCEEEEETTTS
T ss_pred             EEEEeCCCChHHHHHHHHHHHc-----CCceEEEEccCC
Confidence            5568899999999999988764     677777888754

>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A*

Probab=96.04  E-value=0.037  Score=41.48  Aligned_cols=78  Identities=8%  Similarity=0.118  Sum_probs=48.1

Q ss_pred             hCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCC---CcEEEEEeCCcchhhhhhCCCcceeEEEEE-eCCeEEEEEeCC-
Q 032502           44 KEGKIVIANFSATWCGPCRMIAPFFSELSEKYP---SLMFLLVDVDELVEFSTSWDIKATPTFFFL-KDGQQVDKLVGA-  118 (139)
Q Consensus        44 ~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~---~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~-~~g~~~~~~~g~-  118 (139)
                      ...+++++.|.....       ....++...+.   ++.+. ...+.+..++++|||..+|+++++ .+|+....-... 
T Consensus       155 ~~~~~vallF~~~~s-------~~~~~~~ldl~~~~~v~v~-~v~~~~~~l~~kfgV~~~Pslvl~~~nGk~~~~~v~~~  226 (519)
T 3t58_A          155 NKADYLALVFEREDS-------YLGREVTLDLSQYHAVAVR-RVLNTESDLVNKFGVTDFPSCYLLLRNGSVSRVPVLVE  226 (519)
T ss_dssp             CCCSEEEEEEECTTC-------CHHHHHHHHTTTCTTEEEE-EEETTCHHHHHHHTCCCSSEEEEEETTSCEEECCCSSC
T ss_pred             CCCCeEEEEecCCch-------HHHHHHHHHhhccCCeeEE-EecCchHHHHHHcCCCCCCeEEEEeCCCceeecccccc
Confidence            345688888887652       23344444443   46554 344566889999999999999999 566554432233 


Q ss_pred             ChHHHHHHHHH
Q 032502          119 NKPELQKKVAA  129 (139)
Q Consensus       119 ~~~~l~~~i~~  129 (139)
                      +...+...|.+
T Consensus       227 ~r~~~~~~l~~  237 (519)
T 3t58_A          227 SRSFYTSYLRG  237 (519)
T ss_dssp             SHHHHHHHHTT
T ss_pred             cHHHHHHHHHH
Confidence            44445555544

>3l78_A Regulatory protein SPX; transcription, transcriptional factor, disulfide bond, redox-active center, transcription regulati; 1.90A {Streptococcus mutans} SCOP: c.47.1.12

Probab=95.57  E-value=0.017  Score=34.63  Aligned_cols=34  Identities=15%  Similarity=0.370  Sum_probs=27.0

Q ss_pred             EEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcc
Q 032502           50 IANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDEL   88 (139)
Q Consensus        50 lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~   88 (139)
                      +..|+.++|++|+.....|++.     ++.|-.+|+.++
T Consensus         2 i~iY~~~~C~~c~ka~~~L~~~-----gi~~~~~di~~~   35 (120)
T 3l78_A            2 VTLFLSPSCTSCRKARAWLNRH-----DVVFQEHNIMTS   35 (120)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHT-----TCCEEEEETTTS
T ss_pred             EEEEeCCCCHHHHHHHHHHHHc-----CCCeEEEecccC
Confidence            4567899999999999888654     677778888653

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=95.26  E-value=0.15  Score=38.04  Aligned_cols=82  Identities=17%  Similarity=0.129  Sum_probs=59.5

Q ss_pred             CCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhhhhhCCCcceeEEEEEeCCe-EEEEEeCC-ChHHH
Q 032502           46 GKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQ-QVDKLVGA-NKPEL  123 (139)
Q Consensus        46 ~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~-~~~~~~g~-~~~~l  123 (139)
                      .++|.+.++...|..|..+...+++++...+.+.+...+  . ..       ...|++.+..+|+ .--++.|. .-.+|
T Consensus        18 ~~~v~l~~~~~~~~~~~~~~~~~~~~~~~s~~i~~~~~~--~-~~-------~~~p~~~~~~~~~~~~i~f~g~p~g~e~   87 (521)
T 1hyu_A           18 TKPVELIATLDDSAKSAEIKELLAEIAELSDKVTFKEDN--T-LP-------VRKPSFLITNPGSQQGPRFAGSPLGHEF   87 (521)
T ss_dssp             CSCEEEEEECCSSHHHHHHHHHHHHHHTTCTTEEEEECT--T-SS-------SCSSEEEEECTTCCCSCEEESCCCGGGH
T ss_pred             CCCEEEEEEeCCCcchHHHHHHHHHHHHhCCceEEEEcC--C-cc-------cCCCEEEEecCCCcceEEEeccCcchhH
Confidence            456777778888999999999999998877667653321  1 10       5679999986664 23466788 78889


Q ss_pred             HHHHHHHhhccCCC
Q 032502          124 QKKVAAAVDSVVPS  137 (139)
Q Consensus       124 ~~~i~~~~~~~~~~  137 (139)
                      ..+|..++....+.
T Consensus        88 ~s~~~~l~~~~~~~  101 (521)
T 1hyu_A           88 TSLVLALLWTGGHP  101 (521)
T ss_dssp             HHHHHHHHHHTTCC
T ss_pred             HHHHHHHHhhcCCC
Confidence            99988887765543

>3fz4_A Putative arsenate reductase; APC61768, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.38A {Streptococcus mutans UA159} SCOP: c.47.1.0

Probab=95.11  E-value=0.039  Score=33.09  Aligned_cols=34  Identities=15%  Similarity=0.372  Sum_probs=27.2

Q ss_pred             EEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcc
Q 032502           50 IANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDEL   88 (139)
Q Consensus        50 lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~   88 (139)
                      +..|+.++|+.|++....|++-     ++.|-.+|+.++
T Consensus         5 i~iY~~~~C~~c~ka~~~L~~~-----gi~~~~~di~~~   38 (120)
T 3fz4_A            5 LTFYEYPKCSTCRRAKAELDDL-----AWDYDAIDIKKN   38 (120)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHH-----TCCEEEEETTTS
T ss_pred             EEEEeCCCChHHHHHHHHHHHc-----CCceEEEEeccC
Confidence            5567899999999999988765     677778888654

>2g2q_A Glutaredoxin-2; thioredoxin-fold, oxidoreductase, poxvirus; 2.50A {Vaccinia virus}

Probab=94.84  E-value=0.027  Score=33.50  Aligned_cols=37  Identities=27%  Similarity=0.461  Sum_probs=30.0

Q ss_pred             CEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCC
Q 032502           47 KIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVD   86 (139)
Q Consensus        47 k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~   86 (139)
                      |.+++.|..|.|+-|......+.++.++   ..+.+||+-
T Consensus         2 K~tLILfGKP~C~vCe~~s~~l~~lede---Y~ilrVNIl   38 (124)
T 2g2q_A            2 KNVLIIFGKPYCSICENVSDAVEELKSE---YDILHVDIL   38 (124)
T ss_dssp             CEEEEEEECTTCHHHHHHHHHHHTTTTT---EEEEEEECC
T ss_pred             CceEEEeCCCccHHHHHHHHHHHHhhcc---ccEEEEEee
Confidence            5789999999999999999988666544   567788773

>3gn3_A Putative protein-disulfide isomerase; MCSG, PSI, structural GEN protein structure initiative, midwest center for structural genomics; 2.50A {Pseudomonas syringae PV}

Probab=94.83  E-value=0.012  Score=37.93  Aligned_cols=36  Identities=14%  Similarity=0.329  Sum_probs=26.9

Q ss_pred             hhhhhCCCcceeEEEEEeCCeEEEEEeCC-ChHHHHHHH
Q 032502           90 EFSTSWDIKATPTFFFLKDGQQVDKLVGA-NKPELQKKV  127 (139)
Q Consensus        90 ~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~i  127 (139)
                      ..+.++||.++||+++  ||+.+....|. +.+++.++|
T Consensus       145 ~~a~~~GV~gtPtf~i--ng~~~~~~s~~~~~e~w~~~l  181 (182)
T 3gn3_A          145 KYARQNGIHVSPTFMI--NGLVQPGMSSGDPVSKWVSDI  181 (182)
T ss_dssp             HHHHHHTCCSSSEEEE--TTEECTTCCTTSCHHHHHHHH
T ss_pred             HHHHHCCCCccCEEEE--CCEEccCCCCCCCHHHHHHHh
Confidence            3466789999999999  89876544455 777777665

>3gl5_A Putative DSBA oxidoreductase SCO1869; probable DSBA oxidoreductase structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.15A {Streptomyces coelicolor A3}

Probab=94.66  E-value=0.065  Score=35.94  Aligned_cols=41  Identities=15%  Similarity=0.180  Sum_probs=32.6

Q ss_pred             hhhhCCCcceeEEEEEeCCeEEEEEeCC-ChHHHHHHHHHHhhccC
Q 032502           91 FSTSWDIKATPTFFFLKDGQQVDKLVGA-NKPELQKKVAAAVDSVV  135 (139)
Q Consensus        91 ~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~i~~~~~~~~  135 (139)
                      .+..+||.++|++++  +|+.  .+.|. +.+.|.+.|++++....
T Consensus       175 ~a~~~Gv~GvPtfvv--~g~~--~v~Ga~~~e~~~~~i~~~~~~~~  216 (239)
T 3gl5_A          175 EAAQLGATGVPFFVL--DRAY--GVSGAQPAEVFTQALTQAWGERT  216 (239)
T ss_dssp             HHHHTTCCSSSEEEE--TTTE--EEESSCCHHHHHHHHHHHHHTCC
T ss_pred             HHHHCCCCeeCeEEE--CCcE--eecCCCCHHHHHHHHHHHHhhcC
Confidence            456789999999998  7762  34587 89999999999887653

>3gkx_A Putative ARSC family related protein; ARSC family protein, structural genomi 2, protein structure initiative; 2.20A {Bacteroides fragilis} SCOP: c.47.1.0

Probab=94.27  E-value=0.037  Score=33.21  Aligned_cols=34  Identities=9%  Similarity=0.131  Sum_probs=26.2

Q ss_pred             EEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcc
Q 032502           50 IANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDEL   88 (139)
Q Consensus        50 lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~   88 (139)
                      +..|+.++|+.|++....|++.     ++.|-.+|+.++
T Consensus         6 i~iY~~p~C~~c~ka~~~L~~~-----gi~~~~~di~~~   39 (120)
T 3gkx_A            6 TLFLQYPACSTCQKAKKWLIEN-----NIEYTNRLIVDD   39 (120)
T ss_dssp             CEEEECTTCHHHHHHHHHHHHT-----TCCCEEEETTTT
T ss_pred             EEEEECCCChHHHHHHHHHHHc-----CCceEEEecccC
Confidence            4567899999999999888653     667777777543

>1wwj_A Circadian clock protein KAIB; 1.90A {Synechocystis SP} PDB: 1r5p_A 2qke_A 1vgl_A

Probab=94.18  E-value=0.013  Score=34.20  Aligned_cols=59  Identities=17%  Similarity=0.112  Sum_probs=48.5

Q ss_pred             CEEEEEEeCCCChhhhhhhHhHHHHHHhC-C-CcEEEEEeCCcchhhhhhCCCcceeEEEE
Q 032502           47 KIVIANFSATWCGPCRMIAPFFSELSEKY-P-SLMFLLVDVDELVEFSTSWDIKATPTFFF  105 (139)
Q Consensus        47 k~vlv~f~~~~C~~C~~~~~~l~~~~~~~-~-~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~  105 (139)
                      +.++..|-+-..+.+......+.++.+.+ + .+.+-.||+.+++++++.++|-.+||++-
T Consensus         7 ~~~L~LyVaG~tp~S~~ai~nL~~i~e~~l~~~y~LeVIDv~~~PelAe~~~IvAtPTLiK   67 (105)
T 1wwj_A            7 TYVLKLYVAGNTPNSVRALKMLKNILEQEFQGVYALKVIDVLKNPQLAEEDKILATPTLAK   67 (105)
T ss_dssp             EEEEEEEESSCCHHHHHHHHHHHHHHHHHHTTSEEEEEEETTTCCSCCTTCEEECHHHHGG
T ss_pred             ceEEEEEEeCCCchHHHHHHHHHHHHHHhcCCCeEEEEEEcccCHhHHhHCCeEEechhhh
Confidence            45666666778899999999998876654 3 38888999999999999999999998754

>1s3c_A Arsenate reductase; ARSC, arsenite, oxidoreductase; 1.25A {Escherichia coli} PDB: 1sd9_A 1i9d_A 1j9b_A 1sd8_A 1jzw_A* 1sk1_A* 1sjz_A* 1sk0_A* 1sk2_A 1s3d_A

Probab=93.60  E-value=0.042  Score=33.96  Aligned_cols=33  Identities=12%  Similarity=0.039  Sum_probs=25.8

Q ss_pred             EEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCc
Q 032502           50 IANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDE   87 (139)
Q Consensus        50 lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~   87 (139)
                      +..|+.++|++|++....|++.     ++.|-.+|+.+
T Consensus         4 itiY~~p~C~~crkak~~L~~~-----gi~~~~idi~~   36 (141)
T 1s3c_A            4 ITIYHNPASGTSRNTLEMIRNS-----GTEPTIILYLE   36 (141)
T ss_dssp             CEEECCTTCHHHHHHHHHHHHT-----TCCCEEECTTT
T ss_pred             EEEEECCCChHHHHHHHHHHHc-----CCCEEEEECCC
Confidence            4467799999999999888663     67777778764

>3rdw_A Putative arsenate reductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 2.20A {Yersinia pestis}

Probab=93.17  E-value=0.042  Score=32.99  Aligned_cols=34  Identities=12%  Similarity=0.145  Sum_probs=26.0

Q ss_pred             EEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcc
Q 032502           50 IANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDEL   88 (139)
Q Consensus        50 lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~   88 (139)
                      +..|+.++|+.|++....|++.     ++.|-.+|+.++
T Consensus         7 i~iY~~p~C~~c~ka~~~L~~~-----gi~~~~~di~~~   40 (121)
T 3rdw_A            7 VTIYHNPRCSKSRETLALVEQQ-----GITPQVVLYLET   40 (121)
T ss_dssp             CEEECCTTCHHHHHHHHHHHTT-----TCCCEEECTTTS
T ss_pred             EEEEECCCCHHHHHHHHHHHHc-----CCCcEEEeeccC
Confidence            4567899999999999887543     666777777653

>1un2_A DSBA, thiol-disulfide interchange protein; disulfide oxidoreductase, oxidoreductase, protein disulfide isomerase, protein folding, thioredoxin; 2.4A {Escherichia coli} SCOP: c.47.1.13

Probab=92.19  E-value=0.074  Score=34.61  Aligned_cols=24  Identities=13%  Similarity=0.306  Sum_probs=18.4

Q ss_pred             chhhhhhCCCcceeEEEEEeCCeEEE
Q 032502           88 LVEFSTSWDIKATPTFFFLKDGQQVD  113 (139)
Q Consensus        88 ~~~~~~~~~v~~~Pt~~~~~~g~~~~  113 (139)
                      +...+..+||.++|++++  +|+...
T Consensus        39 ~~~~a~~~gi~gvP~fvi--ngk~~~   62 (197)
T 1un2_A           39 QEKAAADVQLRGVPAMFV--NGKYQL   62 (197)
T ss_dssp             HHHHHHHTTCCSSSEEEE--TTTEEE
T ss_pred             HHHHHHHcCCCcCCEEEE--cceEec
Confidence            345678899999999987  777543

>1r4w_A Glutathione S-transferase, mitochondrial; glutathione transferase, kappa GST, RGSTK1-1; HET: GSH; 2.50A {Rattus norvegicus} SCOP: c.47.1.13

Probab=91.72  E-value=0.27  Score=32.44  Aligned_cols=38  Identities=18%  Similarity=0.157  Sum_probs=27.0

Q ss_pred             hhhhCCCcceeEEEEEeCCeEEEEEeCC-ChHHHHHHHHH
Q 032502           91 FSTSWDIKATPTFFFLKDGQQVDKLVGA-NKPELQKKVAA  129 (139)
Q Consensus        91 ~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~i~~  129 (139)
                      .+..+||.++||+++-.+|+ -..+.|. ..+.|.+.|.+
T Consensus       174 ~a~~~gv~G~Ptfvv~~~g~-~~~~~G~~~~~~l~~~l~~  212 (226)
T 1r4w_A          174 AACKYGAFGLPTTVAHVDGK-TYMLFGSDRMELLAYLLGE  212 (226)
T ss_dssp             HHHHTTCCSSCEEEEEETTE-EEEEESTTCHHHHHHHHTC
T ss_pred             HHHHCCCCCCCEEEEeCCCC-cCceeCCCcHHHHHHHhcC
Confidence            46678999999998865654 2355687 67777776654

>3ir4_A Glutaredoxin 2; glutathione, IDP00895, structural genomics, for structural genomics of infectious diseases, csgid, oxidoreductase; HET: MSE GSH; 1.20A {Salmonella enterica subsp} PDB: 1g7o_A

Probab=91.25  E-value=1.3  Score=28.53  Aligned_cols=72  Identities=11%  Similarity=0.117  Sum_probs=46.1

Q ss_pred             EEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhhhhhCCCcceeEEEEEeCCeEEEEEeCCChHHHHHHHHH
Q 032502           50 IANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKVAA  129 (139)
Q Consensus        50 lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~l~~~i~~  129 (139)
                      +..++.+.|++|.+.+-.+....-   .+..+.++........+..+...+|++.. .+|..+.     ....|...|.+
T Consensus         4 ~~Ly~~~~sp~~~~v~~~l~~~gi---~~~~~~v~~~~~~~~~~~~p~~~vP~l~~-~~g~~l~-----eS~aI~~yL~~   74 (218)
T 3ir4_A            4 MKLYIYDHCPFCVKARMIFGLKNI---PVELNVLQNDDEATPTRMIGQKMVPILQK-DDSRYLP-----ESMDIVHYVDN   74 (218)
T ss_dssp             CEEEECTTCHHHHHHHHHHHHHTC---CCEEEECCTTCCHHHHHHHSSSCSCEEEC-TTSCEEE-----CHHHHHHHHHH
T ss_pred             EEEEcCCCCchHHHHHHHHHHcCC---ceEEEECCCcchhhhhhcCCCceeeeEEE-eCCeEee-----CHHHHHHHHHH
Confidence            345788999999999887766521   35666667665544445556778998863 3555433     44556655555


Q ss_pred             H
Q 032502          130 A  130 (139)
Q Consensus       130 ~  130 (139)
                      .
T Consensus        75 ~   75 (218)
T 3ir4_A           75 L   75 (218)
T ss_dssp             T
T ss_pred             h
Confidence            3

>3fz5_A Possible 2-hydroxychromene-2-carboxylate isomeras; 2-hydroxychromene-2-carboxylate ISO structural genomics, PSI-2; HET: MSE GSH PGE; 2.40A {Rhodobacter sphaeroides 2}

Probab=91.06  E-value=0.23  Score=32.22  Aligned_cols=33  Identities=15%  Similarity=0.213  Sum_probs=24.6

Q ss_pred             hhhhCCCcceeEEEEEeCCeEEEEEeCC-ChHHHHHHHH
Q 032502           91 FSTSWDIKATPTFFFLKDGQQVDKLVGA-NKPELQKKVA  128 (139)
Q Consensus        91 ~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~i~  128 (139)
                      .+..+||.++||+++  ||+   .+.|. ..+.|.+.|.
T Consensus       165 ~a~~~Gv~GvPtfvv--~g~---~~~G~~~~~~l~~~l~  198 (202)
T 3fz5_A          165 DAVARGIFGSPFFLV--DDE---PFWGWDRMEMMAEWIR  198 (202)
T ss_dssp             HHHHTTCCSSSEEEE--TTE---EEESGGGHHHHHHHHH
T ss_pred             HHHHCCCCcCCEEEE--CCE---EEecCCCHHHHHHHHh
Confidence            456789999999999  776   45577 6666666654

>3f0i_A Arsenate reductase; structural genomics, IDP01300, vibrio CH center for structural genomics of infectious diseases, CSGI oxidoreductase; HET: MSE; 1.88A {Vibrio cholerae}

Probab=90.86  E-value=0.07  Score=31.91  Aligned_cols=33  Identities=9%  Similarity=0.191  Sum_probs=24.8

Q ss_pred             EEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCc
Q 032502           50 IANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDE   87 (139)
Q Consensus        50 lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~   87 (139)
                      +..|+.++|+.|++....|++-     ++.|-.+|+.+
T Consensus         6 i~iY~~p~C~~c~ka~~~L~~~-----gi~~~~~di~~   38 (119)
T 3f0i_A            6 VVIYHNPKCSKSRETLALLENQ-----GIAPQVIKYLE   38 (119)
T ss_dssp             CEEECCTTCHHHHHHHHHHHHT-----TCCCEEECHHH
T ss_pred             EEEEECCCChHHHHHHHHHHHc-----CCceEEEEecc
Confidence            4567799999999999888653     56666676643

>3fhk_A UPF0403 protein YPHP; disulfide isomerase, thioredoxin superfamily, CXC motif, structural genomics, surface entropy reduction, Ser, PSI-2; 2.30A {Bacillus subtilis}

Probab=89.77  E-value=1.8  Score=26.55  Aligned_cols=107  Identities=20%  Similarity=0.271  Sum_probs=64.1

Q ss_pred             cCCCceEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhh--hhhHhHHHHHHhC--CCcEEEEEeCCcchhh---hh
Q 032502           21 FAGGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCR--MIAPFFSELSEKY--PSLMFLLVDVDELVEF---ST   93 (139)
Q Consensus        21 ~~~~~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~--~~~~~l~~~~~~~--~~v~~~~vd~~~~~~~---~~   93 (139)
                      +...-+.++.+.++.+..+.   .....++|.+ .+-|+ |.  ..+|......-.+  ..-+++.|=...+.+.   ++
T Consensus        23 Lt~~Gf~eL~T~e~Vd~a~~---~~~GTtlVvV-NSVCG-CAag~ARPaa~~a~l~~~kkPD~lvTVFAGqDkEAt~~aR   97 (147)
T 3fhk_A           23 LTGAGFEELTTAEEVENFME---KAEGTTLVVV-NSVCG-CAAGLARPAATQAVLQNDKTPDNTVTVFAGQDKEATAKMR   97 (147)
T ss_dssp             HHTTTCEECCSHHHHHHHHH---HCCSEEEEEE-ECSSH-HHHHTHHHHHHHHHHHCSSCCSEEEEEETTTSHHHHHHHH
T ss_pred             HHHhCccccCCHHHHHHHHh---cCCCcEEEEE-ecccc-ccccccCHHHHHHhhhcCCCCCceEEeccCCCHHHHHHHH
Confidence            33445678888888887774   2245666644 45576 33  4566665442122  1245555555444332   23


Q ss_pred             hC--CC-cceeEEEEEeCCeEEEEEe-----CCChHHHHHHHHHHhh
Q 032502           94 SW--DI-KATPTFFFLKDGQQVDKLV-----GANKPELQKKVAAAVD  132 (139)
Q Consensus        94 ~~--~v-~~~Pt~~~~~~g~~~~~~~-----g~~~~~l~~~i~~~~~  132 (139)
                      .|  +. .+-|++.+|++|++++.+.     |.+.+.|..-|....+
T Consensus        98 ~yf~~~pPSSPS~ALfKdGelVh~ieRh~IEGr~a~~Ia~~L~~afd  144 (147)
T 3fhk_A           98 EYFTGAAPSSPSMALLKGKEVVHFIPRHEIEGHDMEEIMKNLTAAFD  144 (147)
T ss_dssp             TTSTTCCCCSSEEEEEETTEEEEEECGGGTTTSCHHHHHHHHHHHHH
T ss_pred             HhcCCCCCCCchheeeeCCEEEEEeehhhcCCCCHHHHHHHHHHHHH
Confidence            33  22 4678999999999998653     5577777777766654

>4f03_A Glutathione transferase; GST fold; 1.80A {Phanerochaete chrysosporium} PDB: 4g19_A*

Probab=89.74  E-value=2.1  Score=28.07  Aligned_cols=69  Identities=9%  Similarity=0.111  Sum_probs=40.1

Q ss_pred             eCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhhhhhCC------------CcceeEEEEEeCCeEEEEEeCCChH
Q 032502           54 SATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWD------------IKATPTFFFLKDGQQVDKLVGANKP  121 (139)
Q Consensus        54 ~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~------------v~~~Pt~~~~~~g~~~~~~~g~~~~  121 (139)
                      ..+|||+|.+++-.|....  . .+..+.||..+.+......|            ...+|++..-.+|.++.     +..
T Consensus        18 ~~~~SP~~~kvr~~L~~kg--i-~y~~~~v~~~~~~~~~~~~g~~~~~~~~~~~P~~~VPvL~~~d~g~~l~-----ES~   89 (253)
T 4f03_A           18 HSPWSPNTWKIRYALNYKG--L-KYKTEWVEYPDIAGVVQKLGGKPTEKTPDGRDHYTLPVIYDPNTKKVVE-----DSA   89 (253)
T ss_dssp             TCCCCHHHHHHHHHHHHHT--C-CEEEEECCGGGHHHHHHHHTCCCSEECTTCCEECCSCEEEETTTTEEEE-----SHH
T ss_pred             CCCcChhHHHHHHHHHHcC--C-CCEEEEEccccchhhhhhcCCCCchhhHhhCCCCccCeEEeCCCCEEEe-----cHH
Confidence            3689999999988775441  1 24555666544443333322            23578776545566543     445


Q ss_pred             HHHHHHHHH
Q 032502          122 ELQKKVAAA  130 (139)
Q Consensus       122 ~l~~~i~~~  130 (139)
                      .|...|++.
T Consensus        90 aI~~YL~~~   98 (253)
T 4f03_A           90 AIAKYLDET   98 (253)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            566666554

>4g9p_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; oxidoreductase, isoprenoid biosynthesis, non mevalonate PATH iron-sulphur-cluster; HET: CDI MES; 1.55A {Thermus thermophilus} PDB: 2y0f_A*

Probab=89.69  E-value=2.3  Score=30.86  Aligned_cols=65  Identities=20%  Similarity=0.204  Sum_probs=46.2

Q ss_pred             HHHHhCC---CcEEEEEeCCcch---hhhhhCCC-----cceeEEEEEeCCeEEEEEeCC-ChHHHHHHHHHHhhcc
Q 032502           70 ELSEKYP---SLMFLLVDVDELV---EFSTSWDI-----KATPTFFFLKDGQQVDKLVGA-NKPELQKKVAAAVDSV  134 (139)
Q Consensus        70 ~~~~~~~---~v~~~~vd~~~~~---~~~~~~~v-----~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~i~~~~~~~  134 (139)
                      .+..+|+   ++++..+.|--|-   .-...+|+     -+.|..++|.+|+++....+. -.++|.+.|++++...
T Consensus       325 ~~~~~~~~~~~l~VAVMGCvVNGPGEa~~ADiGi~~~G~G~~~~~~lf~~G~~~~~v~~~~iv~~l~~~i~~~~~~~  401 (406)
T 4g9p_A          325 EWRARYPGVEELKVAVMGCVVNGPGESKHAHIGISLPGAGEEPKAPVYADGKLLTILKGEGIAEEFLRLVEDYVKTR  401 (406)
T ss_dssp             HHHHHSTTGGGCEEEEESSTTTHHHHHHHSSEEEECCCTTSCSEEEEEETTEEEEEEESSCHHHHHHHHHHHHHHHH
T ss_pred             hhhhccCCCCCCEEEEECCcccCcchhhhcCcCcccCCCCCCCeeeEEECCEEEEecCHHHHHHHHHHHHHHHHHHh
Confidence            3444565   4888888886442   12234565     367889999999999988877 4788888888887654

>3lyk_A Stringent starvation protein A homolog; structural genomics, GST-superfamily, SSPA, PSI-2, protein structure initiative; 2.10A {Haemophilus influenzae}

Probab=88.78  E-value=3.3  Score=26.57  Aligned_cols=74  Identities=14%  Similarity=0.055  Sum_probs=46.8

Q ss_pred             CEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCc-chhhhhhCCCcceeEEEEEeCCeEEEEEeCCChHHHHH
Q 032502           47 KIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDE-LVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQK  125 (139)
Q Consensus        47 k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~-~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~l~~  125 (139)
                      ++.+..++.++|++|.+.+-.+....-   .+.+..++... .+++........+|++.  .+|..+.     ....|..
T Consensus         4 ~~~~~Ly~~~~sp~~~~v~~~L~~~gi---~~e~~~v~~~~~~~~~~~~~P~g~vP~L~--~~g~~l~-----eS~aI~~   73 (216)
T 3lyk_A            4 RSVMTLFSNKDDIYCHQVKIVLAEKGV---LYENAEVDLQALPEDLMELNPYGTVPTLV--DRDLVLF-----NSRIIME   73 (216)
T ss_dssp             --CEEEEECTTCHHHHHHHHHHHHHTC---CCEEEECCTTSCCHHHHHHCTTCCSCEEE--ETTEEEE-----SHHHHHH
T ss_pred             CceEEEEeCCCChhHHHHHHHHHHcCC---CcEEEeCCcccCcHHHHhhCCCCCcCeEE--ECCeEec-----CHHHHHH
Confidence            345677889999999998877766521   35556666543 34555556677899987  4665443     4455555


Q ss_pred             HHHHH
Q 032502          126 KVAAA  130 (139)
Q Consensus       126 ~i~~~  130 (139)
                      .|.+.
T Consensus        74 yL~~~   78 (216)
T 3lyk_A           74 YLDER   78 (216)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            55544

>1r4w_A Glutathione S-transferase, mitochondrial; glutathione transferase, kappa GST, RGSTK1-1; HET: GSH; 2.50A {Rattus norvegicus} SCOP: c.47.1.13

Probab=87.53  E-value=0.97  Score=29.69  Aligned_cols=34  Identities=9%  Similarity=0.058  Sum_probs=27.4

Q ss_pred             EEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEE
Q 032502           48 IVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLL   82 (139)
Q Consensus        48 ~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~   82 (139)
                      ..|.+|+..-||+|....+.|.++.+.+ ++.+..
T Consensus         6 ~~I~~~~D~~CP~Cy~~~~~l~~l~~~~-~~~v~~   39 (226)
T 1r4w_A            6 RVLELFYDVLSPYSWLGFEVLCRYQHLW-NIKLKL   39 (226)
T ss_dssp             EEEEEEECTTCHHHHHHHHHHHHHTTTS-SEEEEE
T ss_pred             ceEEEEEeCCChHHHHHHHHHHHHHHHc-CCeEEE
Confidence            4577888999999999999999998777 444433

>4hoj_A REGF protein; GST, glutathione S-transferase, enzyme function initiative, structural genomics, transferase; HET: GSH; 1.40A {Neisseria gonorrhoeae}

Probab=86.57  E-value=4.6  Score=25.75  Aligned_cols=71  Identities=7%  Similarity=0.077  Sum_probs=45.3

Q ss_pred             EEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcc-hhhhhhCCCcceeEEEEEeCCeEEEEEeCCChHHHHHHHH
Q 032502           50 IANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDEL-VEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKVA  128 (139)
Q Consensus        50 lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~-~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~l~~~i~  128 (139)
                      +-.++.+.||+|++++=.+....-   .+.++.+|.... +++.+......+|++.  .+|..+.     ....|.+.|.
T Consensus         4 m~LY~~~~sP~~~rvr~~L~e~gi---~~e~~~v~~~~~~~~~~~~nP~g~vPvL~--~~~~~l~-----ES~aI~~yL~   73 (210)
T 4hoj_A            4 MTLYSGITCPFSHRCRFVLYEKGM---DFEIKDIDIYNKPEDLAVMNPYNQVPVLV--ERDLVLH-----ESNIINEYID   73 (210)
T ss_dssp             CEEEECTTCHHHHHHHHHHHHHTC---CCEEEECCTTSCCHHHHHHCTTCCSCEEE--ETTEEEE-----SHHHHHHHHH
T ss_pred             EEEecCCCChHHHHHHHHHHHcCC---CCEEEEeCCCCCCHHHHHHCCCCCCcEEE--ECCEEEe-----ccHHHHHHHH
Confidence            345678999999998877765521   355666666543 3455555677899876  3676543     4455666665


Q ss_pred             HH
Q 032502          129 AA  130 (139)
Q Consensus       129 ~~  130 (139)
                      +.
T Consensus        74 ~~   75 (210)
T 4hoj_A           74 ER   75 (210)
T ss_dssp             HH
T ss_pred             Hh
Confidence            54

>3rpp_A Glutathione S-transferase kappa 1; glutathione transferase, kappa GST, TRX domain, GSH binding, detoxification, APO form; 1.80A {Homo sapiens} PDB: 3rpn_A 1yzx_A*

Probab=85.56  E-value=1.2  Score=29.55  Aligned_cols=38  Identities=18%  Similarity=0.190  Sum_probs=26.3

Q ss_pred             hhhhCCCcceeEEEEEeCCeEEEEEeCC-ChHHHHHHHHH
Q 032502           91 FSTSWDIKATPTFFFLKDGQQVDKLVGA-NKPELQKKVAA  129 (139)
Q Consensus        91 ~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~i~~  129 (139)
                      .+..+||.++|++++-.+|+. ..+.|. ..+.|.++|.+
T Consensus       174 ~a~~~Gv~GvPtfvv~~~g~~-~~f~G~drl~~l~~~L~~  212 (234)
T 3rpp_A          174 AACRYGAFGLPITVAHVDGQT-HMLFGSDRMELLAHLLGE  212 (234)
T ss_dssp             HHHHTTCSSSCEEEEEETTEE-EEEESSSCHHHHHHHHTC
T ss_pred             HHHHcCCCCCCEEEEeCCCCc-CceeCccCHHHHHHHhcc
Confidence            355789999999988446752 245587 66677766644

>4dej_A Glutathione S-transferase related protein; transferase-like protein, transcription regulation; 2.90A {Idiomarina loihiensis}

Probab=85.34  E-value=5.8  Score=25.86  Aligned_cols=74  Identities=11%  Similarity=0.048  Sum_probs=47.8

Q ss_pred             CEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCc-chhhhhhCCC-cceeEEEEEeCCeEEEEEeCCChHHHH
Q 032502           47 KIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDE-LVEFSTSWDI-KATPTFFFLKDGQQVDKLVGANKPELQ  124 (139)
Q Consensus        47 k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~-~~~~~~~~~v-~~~Pt~~~~~~g~~~~~~~g~~~~~l~  124 (139)
                      +..+..++.+.|+.|.+.+-.+....-   .+.+..++... .+++...... ..+|++.  .+|..+.     ....|.
T Consensus        10 ~~~~~Ly~~~~sp~~~~vr~~L~~~gi---~~e~~~v~~~~~~~~~~~~nP~~g~vPvL~--~~g~~l~-----eS~aI~   79 (231)
T 4dej_A           10 RSVMTLYSGKDDLKSHQVRLVLAEKGV---GVEITYVTDESTPEDLLQLNPYPEAKPTLV--DRELVLY-----NAQIIM   79 (231)
T ss_dssp             CSSCEEEECSSCHHHHHHHHHHHHHTC---BCEEEECCSSCCCHHHHHHCCSSSCCSEEE--ETTEEEE-----SHHHHH
T ss_pred             CceEEEEcCCCChHHHHHHHHHHHcCC---CcEEEEcCcccCCHHHHHhCCCCCCCCEEE--ECCEEEE-----cHHHHH
Confidence            445677889999999999887766622   25555666553 3555555567 7899987  4665443     444555


Q ss_pred             HHHHHH
Q 032502          125 KKVAAA  130 (139)
Q Consensus       125 ~~i~~~  130 (139)
                      ..|.+.
T Consensus        80 ~YL~~~   85 (231)
T 4dej_A           80 EYLDER   85 (231)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            555544

>1s3a_A NADH-ubiquinone oxidoreductase B8 subunit; CI-B8, ndufa2, complex I; NMR {Homo sapiens} SCOP: c.47.1.22

Probab=85.15  E-value=3.8  Score=23.54  Aligned_cols=73  Identities=14%  Similarity=0.260  Sum_probs=48.7

Q ss_pred             EEEEeCCCChhhhhhhHh----HHHHHHhCCCcEEEEEeCCcchhhhhhCCCcceeEEEEE-eCCeEEEEEeCC-ChHHH
Q 032502           50 IANFSATWCGPCRMIAPF----FSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFL-KDGQQVDKLVGA-NKPEL  123 (139)
Q Consensus        50 lv~f~~~~C~~C~~~~~~----l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~-~~g~~~~~~~g~-~~~~l  123 (139)
                      |...|-+|.+.++-++..    +.+++...|++.|..--..           ...|.+... .+|+....-... +.++|
T Consensus        22 l~~~yc~~~~sS~G~R~Fl~~~l~~~k~~NP~v~i~v~~~~-----------~~~P~i~a~Y~~G~ek~i~l~n~s~~eI   90 (102)
T 1s3a_A           22 IRIHLCQRSPGSQGVRDFIEKRYVELKKANPDLPILIRECS-----------DVQPKLWARYAFGQETNVPLNNFSADQV   90 (102)
T ss_dssp             EEEECCSSSCCCHHHHHHHHHTHHHHHHHSTTCCEEEECCC-----------SSSCEEEEEESSCCEEEEECTTCCHHHH
T ss_pred             EEEEEcCCCCCchhHHHHHHHhhHHHHHHCCCceEEEEECC-----------CCCCEEEEEECCCCEEEEECCCCCHHHH
Confidence            455566777766655544    4677777888887643211           246765555 788876655444 99999


Q ss_pred             HHHHHHHhhc
Q 032502          124 QKKVAAAVDS  133 (139)
Q Consensus       124 ~~~i~~~~~~  133 (139)
                      .+.|..+.+.
T Consensus        91 ~~~l~~l~~~  100 (102)
T 1s3a_A           91 TRALENVLSG  100 (102)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhc
Confidence            9999988764

>2r4v_A XAP121, chloride intracellular channel protein 2; chloride intracellular channels, CLIC2, pore-forming protein ryanodine receptor, chloride channel; HET: GSH; 1.85A {Homo sapiens} PDB: 2r5g_A 2per_A*

Probab=84.50  E-value=4.4  Score=26.72  Aligned_cols=68  Identities=10%  Similarity=0.066  Sum_probs=40.2

Q ss_pred             eCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcc-hhhhhhCCCcceeEEEEEeCCeEEEEEeCCChHHHHHHHHHHh
Q 032502           54 SATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDEL-VEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKVAAAV  131 (139)
Q Consensus        54 ~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~-~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~l~~~i~~~~  131 (139)
                      +.++|++|++.+-.|....-   .+..+.++.... +++.+......+|++.  .+|..+     .....|...|.+..
T Consensus        26 ~~~~sp~~~rv~~~L~~~gi---~ye~~~v~~~~~~~~~~~~nP~g~vP~L~--~~g~~l-----~ES~aI~~YL~~~~   94 (247)
T 2r4v_A           26 SIGNCPFCQRLFMILWLKGV---KFNVTTVDMTRKPEELKDLAPGTNPPFLV--YNKELK-----TDFIKIEEFLEQTL   94 (247)
T ss_dssp             SBCSCHHHHHHHHHHHHHTC---CCEEEEECCC----------CCSSSCEEE--ETTEEE-----CCHHHHHHHHHHHS
T ss_pred             cCCCChhHHHHHHHHHHcCC---CcEEEEcCcccchHHHHHhCCCCCCCEEE--ECCEec-----cCHHHHHHHHHHhc
Confidence            68899999999887766521   355566665432 3343444567899887  466543     25667777777654

>2cvd_A Glutathione-requiring prostaglandin D synthase; glutathione-S-transferase, isomerase; HET: GSH HQL; 1.45A {Homo sapiens} SCOP: a.45.1.1 c.47.1.5 PDB: 1iyi_A* 1v40_A* 1iyh_A* 3vi5_A* 3vi7_A* 2vcq_A* 2vcw_A* 2vcx_A* 2vcz_A* 2vd0_A* 2vd1_A* 3kxo_A* 3ee2_A* 1pd2_1*

Probab=83.95  E-value=6  Score=24.84  Aligned_cols=58  Identities=14%  Similarity=0.107  Sum_probs=37.4

Q ss_pred             EEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhhhhhCCCcceeEEEEEeCCeEE
Q 032502           50 IANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQV  112 (139)
Q Consensus        50 lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~  112 (139)
                      +..++.+.|+.|.+.+-.+....-   .+....++.+..+++.+......+|++.  .+|..+
T Consensus         3 ~~Ly~~~~s~~~~~v~~~L~~~gi---~~e~~~v~~~~~~~~~~~~P~g~vP~L~--~~g~~l   60 (198)
T 2cvd_A            3 YKLTYFNMRGRAEIIRYIFAYLDI---QYEDHRIEQADWPEIKSTLPFGKIPILE--VDGLTL   60 (198)
T ss_dssp             EEEEEESSSGGGHHHHHHHHHTTC---CCEEEEECGGGHHHHHTTSTTSCSCEEE--ETTEEE
T ss_pred             cEEEEcCCCchHHHHHHHHHHcCC---CceEEEeCHHHHHHhccCCCCCCCCEEE--ECCEEE
Confidence            345667789999988876655421   3556666665445555555667899887  366544

>1z9h_A Membrane-associated prostaglandin E synthase-2; membran associated protein, indomethacin, isomerase; HET: IMN; 2.60A {Macaca fascicularis} SCOP: a.45.1.1 c.47.1.5 PDB: 2pbj_A*

Probab=83.60  E-value=4.7  Score=27.32  Aligned_cols=72  Identities=11%  Similarity=0.179  Sum_probs=42.2

Q ss_pred             EEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCC--cchhhhhhCCCcceeEEEEEeCCeEEEEEeCCChHHHHHH
Q 032502           49 VIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVD--ELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKK  126 (139)
Q Consensus        49 vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~--~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~l~~~  126 (139)
                      .+..|+.++|++|.+..-.+...     ++.|-.++++  ...++ +..+...+|++....+|..   ..-.....|...
T Consensus        14 ~~~Ly~~~~sp~~~~v~~~L~~~-----gi~~~~~~v~~~~~~~~-~~~p~~~vP~l~~~~~g~~---~~l~eS~aI~~y   84 (290)
T 1z9h_A           14 QLTLYQYKTCPFCSKVRAFLDFH-----ALPYQVVEVNPVLRAEI-KFSSYRKVPILVAQEGESS---QQLNDSSVIISA   84 (290)
T ss_dssp             EEEEEECTTCHHHHHHHHHHHHT-----TCCEEEEECCTTTCGGG-TTCSCCSSCEEEEEETTEE---EEECSHHHHHHH
T ss_pred             CEEEEeCCCChHHHHHHHHHHHc-----CCCeEEEECChhhHHHH-HHcCCCCCCEEEECCCCCe---EEecCHHHHHHH
Confidence            35667789999999988777654     4444444443  22332 3445678998876443321   011255667776


Q ss_pred             HHH
Q 032502          127 VAA  129 (139)
Q Consensus       127 i~~  129 (139)
                      |.+
T Consensus        85 L~~   87 (290)
T 1z9h_A           85 LKT   87 (290)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            663

>4g10_A Glutathione S-transferase homolog; thioredoxin fold; HET: MSE GSH; 1.20A {Sphingomonas paucimobilis}

Probab=83.58  E-value=7.4  Score=26.03  Aligned_cols=72  Identities=7%  Similarity=0.095  Sum_probs=43.9

Q ss_pred             EEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcc-h-hhh-hhCCCcceeEEEEEeCCeEEEEEeCCChHHHHHH
Q 032502           50 IANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDEL-V-EFS-TSWDIKATPTFFFLKDGQQVDKLVGANKPELQKK  126 (139)
Q Consensus        50 lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~-~-~~~-~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~l~~~  126 (139)
                      +..++.+.|++|++++=.|.+..-   .+..+.||.... + .+. +.-....+|++. +.+|..+.     ....|...
T Consensus         7 ~~LY~~~~sP~~~rv~i~L~e~gi---~ye~~~vd~~~~~pe~~~~~~nP~g~VPvL~-~d~g~~l~-----ES~aI~~Y   77 (265)
T 4g10_A            7 LTIYHIPGCPFSERVEIMLELKGL---RMKDVEIDISKPRPDWLLAKTGGTTALPLLD-VENGESLK-----ESMVILRY   77 (265)
T ss_dssp             CEEEECTTCHHHHHHHHHHHHHTC---CCEEEECCTTSCCCHHHHHHHTSCCCSCEEE-CTTSCEEE-----CHHHHHHH
T ss_pred             eEEEecCCChHHHHHHHHHHHhCC---CCEEEEeCCCCCCcHHHHHhcCCCCccceEE-ECCCeEEe-----ccHHHHHH
Confidence            455788999999998877766521   355666676543 2 222 334567799874 35666543     44556555


Q ss_pred             HHHH
Q 032502          127 VAAA  130 (139)
Q Consensus       127 i~~~  130 (139)
                      |.+.
T Consensus        78 L~~~   81 (265)
T 4g10_A           78 LEQR   81 (265)
T ss_dssp             HHHH
T ss_pred             Hhhc
Confidence            5554

>2gsq_A Squid GST, glutathione S-transferase; squid digestive gland, sigma class; HET: GBI; 2.20A {Ommastrephes sloani} SCOP: a.45.1.1 c.47.1.5 PDB: 1gsq_A*

Probab=83.36  E-value=6.5  Score=24.77  Aligned_cols=71  Identities=11%  Similarity=0.155  Sum_probs=43.7

Q ss_pred             EEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhhhhhCCCcceeEEEEEeCCeEEEEEeCCChHHHHHHHHH
Q 032502           50 IANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKVAA  129 (139)
Q Consensus        50 lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~l~~~i~~  129 (139)
                      +..++.+.|+.|.+.+-.+....-   .+....++....+++.+......+|++..  +|..+.     ....|...|.+
T Consensus         3 ~~Ly~~~~s~~~~~v~~~L~~~gi---~~e~~~v~~~~~~~~~~~~P~g~vP~L~~--~g~~l~-----eS~aI~~yL~~   72 (202)
T 2gsq_A            3 YTLHYFPLMGRAELCRFVLAAHGE---EFTDRVVEMADWPNLKATMYSNAMPVLDI--DGTKMS-----QSMCIARHLAR   72 (202)
T ss_dssp             EEEEECSSSGGGHHHHHHHHHTTC---CCEEEECCTTTHHHHGGGSGGGSSCEEEE--TTEEEC-----CHHHHHHHHHH
T ss_pred             cEEEEcCCCchhHHHHHHHHHcCC---CeeEEEeCHHHHHhhcccCCCCCCCEEEE--CCEEEe-----cHHHHHHHHHH
Confidence            455677889999988766654311   35556666555455555555678998874  664332     44555555555


Q ss_pred             H
Q 032502          130 A  130 (139)
Q Consensus       130 ~  130 (139)
                      .
T Consensus        73 ~   73 (202)
T 2gsq_A           73 E   73 (202)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2on7_A Nagst-1, Na glutathione S-transferase 1; hookworm; 2.40A {Necator americanus}

Probab=82.91  E-value=6.8  Score=24.68  Aligned_cols=70  Identities=11%  Similarity=0.140  Sum_probs=42.9

Q ss_pred             EEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhhhhhCCCcceeEEEEEeCCeEEEEEeCCChHHHHHHHHH
Q 032502           50 IANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKVAA  129 (139)
Q Consensus        50 lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~l~~~i~~  129 (139)
                      +..++.+.|+.|.+.+-.+....-   .+....++.+..+++.+......+|++..  +|..+.     ....|...|.+
T Consensus         4 ~~Ly~~~~s~~~~~vr~~L~~~gi---~~e~~~v~~~~~~~~~~~~P~g~vP~L~~--~g~~l~-----eS~aI~~yL~~   73 (206)
T 2on7_A            4 YKLTYFAIRGAGECARQIFALADQ---EFEDVRLDKEQFAKVKPDLPFGQVPVLEV--DGKQLA-----QSLAICRYLAR   73 (206)
T ss_dssp             EEEEEESSSTTTHHHHHHHHHHTC---CCEEEEECHHHHHHHGGGSSSSCSCEEEE--TTEEEE-----CHHHHHHHHHH
T ss_pred             eEEEEcCCCcchHHHHHHHHHcCC---CeeEEEecHHHHHHhCcCCCCCCCCEEEE--CCEEEe-----eHHHHHHHHHH
Confidence            345667789999988877766521   35556666544344555556778998874  665443     44455555544

>4glt_A Glutathione S-transferase-like protein; structural genomics, function initiative, EFI; HET: GSH; 2.20A {Methylobacillus flagellatus}

Probab=82.52  E-value=5.1  Score=25.97  Aligned_cols=70  Identities=10%  Similarity=0.103  Sum_probs=43.1

Q ss_pred             EEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcch-hhhhhCCCcceeEEEEEeCCeEEEEEeCCChHHHHHHHHH
Q 032502           51 ANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELV-EFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKVAA  129 (139)
Q Consensus        51 v~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~-~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~l~~~i~~  129 (139)
                      =.|+++.||+|++++=.|.+..-   .+.++.+|..+.+ ++.+.-....+|+++. .+|..+.     ....|.+.|.+
T Consensus        24 KLy~~~~SP~~~rVr~~L~e~gi---~~e~~~v~~~~~~~~~~~~nP~gkVPvL~~-~dG~~l~-----ES~aI~~YL~~   94 (225)
T 4glt_A           24 KLLYSNTSPYARKVRVVAAEKRI---DVDMVLVVLADPECPVADHNPLGKIPVLIL-PDGESLY-----DSRVIVEYLDH   94 (225)
T ss_dssp             EEEECSSCHHHHHHHHHHHHHTC---CCEEEECCTTCSSSCGGGTCTTCCSCEEEC-TTSCEEC-----SHHHHHHHHHT
T ss_pred             eEecCCCCHHHHHHHHHHHHhCC---CCEEEEeCCCCCCHHHHHhCCCCCCCEEEe-CCCCEEe-----ehHHHHHHHHH
Confidence            35789999999999887766521   3566667765433 3333334667998754 5665442     44555555544

>2on5_A Nagst-2, Na glutathione S-transferase 2; hookworm; HET: GSH; 1.90A {Necator americanus}

Probab=82.04  E-value=7.4  Score=24.51  Aligned_cols=71  Identities=11%  Similarity=0.054  Sum_probs=44.9

Q ss_pred             EEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhhhhhCCCcceeEEEEEeCCeEEEEEeCCChHHHHHHHHH
Q 032502           50 IANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKVAA  129 (139)
Q Consensus        50 lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~l~~~i~~  129 (139)
                      +..++.+.|+.|.+.+-.+....-   .+....++.+..+++.+......+|++..  +|..+.     ....|...|.+
T Consensus         4 ~~Ly~~~~s~~~~~vr~~L~~~gi---~ye~~~v~~~~~~~~~~~~P~g~vP~L~~--~g~~l~-----eS~aI~~yL~~   73 (206)
T 2on5_A            4 YKLTYFAGRGLAEPIRQIFALAGQ---KYEDVRYTFQEWPKHKDEMPFGQIPVLEE--DGKQLA-----QSFAIARYLSR   73 (206)
T ss_dssp             EEEEEESSSGGGHHHHHHHHHHTC---CCEEEEECTTTGGGGGGGSTTSCSCEEEE--TTEEEE-----SHHHHHHHHHH
T ss_pred             eEEEecCCCcchHHHHHHHHHcCC---CceEEEecHHHHHHhccCCCCCCCCEEEE--CCEEEe-----cHHHHHHHHHH
Confidence            345667789999988877766521   35666777655555555556778998874  665443     44455555544


Q ss_pred             H
Q 032502          130 A  130 (139)
Q Consensus       130 ~  130 (139)
                      .
T Consensus        74 ~   74 (206)
T 2on5_A           74 K   74 (206)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2ws2_A NU-class GST, glutathione S-transferase; parasite, nematode; 2.01A {Haemonchus contortus}

Probab=81.73  E-value=7.6  Score=24.44  Aligned_cols=71  Identities=14%  Similarity=0.124  Sum_probs=44.6

Q ss_pred             EEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhhhhhCCCcceeEEEEEeCCeEEEEEeCCChHHHHHHHHH
Q 032502           50 IANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKVAA  129 (139)
Q Consensus        50 lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~l~~~i~~  129 (139)
                      +..++.+.|+.|.+.+-.++...-   .+..+.++.+..+++.+......+|++..  +|..+.     ....|...|.+
T Consensus         4 ~~Ly~~~~s~~~~~v~~~L~~~gi---~~e~~~v~~~~~~~~~~~~P~g~vP~L~~--~g~~l~-----eS~aI~~yL~~   73 (204)
T 2ws2_A            4 YKLTYFNGRGAAEIIRQVFVLAGQ---DYEDVRLTHEEWPKHKASMPFGQLPVLEV--DGKQLP-----QSVAIVRYLAR   73 (204)
T ss_dssp             EEEEEESSSGGGHHHHHHHHHTTC---CCEEEEECTTTGGGTGGGSTTSCSCEEEE--TTEEEE-----SHHHHHHHHHH
T ss_pred             cEEEEeCCCchHHHHHHHHHHcCC---CceEEEecHhhHHHhhhcCCCCCCCEEEE--CCEEee-----cHHHHHHHHHH
Confidence            345677889999988876665421   35666677655555555556778999874  665443     44555555554


Q ss_pred             H
Q 032502          130 A  130 (139)
Q Consensus       130 ~  130 (139)
                      .
T Consensus        74 ~   74 (204)
T 2ws2_A           74 K   74 (204)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3vln_A GSTO-1, glutathione S-transferase omega-1; GST fold, reductase; HET: ASC; 1.70A {Homo sapiens} PDB: 1eem_A* 3lfl_A*

Probab=81.23  E-value=8.9  Score=24.91  Aligned_cols=72  Identities=10%  Similarity=0.017  Sum_probs=45.1

Q ss_pred             EEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcch-hhhhhCCCcceeEEEEEeCCeEEEEEeCCChHHHHHHHH
Q 032502           50 IANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELV-EFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKVA  128 (139)
Q Consensus        50 lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~-~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~l~~~i~  128 (139)
                      +..++.++|++|.+.+-.++...-   .+..+.++....+ ++........+|++.. .+|..+.     ....|...|.
T Consensus        24 ~~Ly~~~~sp~~~~v~~~L~~~gi---~ye~~~v~~~~~~~~~~~~~P~g~vP~L~~-~~g~~l~-----eS~aI~~yL~   94 (241)
T 3vln_A           24 IRIYSMRFSPFAERTRLVLKAKGI---RHEVININLKNKPEWFFKKNPFGLVPVLEN-SQGQLIY-----ESAITCEYLD   94 (241)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHTC---CEEEEEBCTTSCCTTHHHHCTTCCSCEEEC-TTCCEEE-----SHHHHHHHHH
T ss_pred             EEEEcCCCCcHHHHHHHHHHHcCC---CCeEEecCcccCCHHHHHhCCCCCCCEEEE-CCCcEEE-----cHHHHHHHHH
Confidence            566788999999999888876521   3555566655433 3555566778998864 3554433     4445555555


Q ss_pred             HH
Q 032502          129 AA  130 (139)
Q Consensus       129 ~~  130 (139)
                      +.
T Consensus        95 ~~   96 (241)
T 3vln_A           95 EA   96 (241)
T ss_dssp             HH
T ss_pred             Hh
Confidence            44

>2ahe_A Chloride intracellular channel protein 4; glutathione-S-transferase superfamily, CLIC4, NCC27, chloride ION channel, metal transport; 1.80A {Homo sapiens} PDB: 2d2z_A

Probab=80.87  E-value=10  Score=25.39  Aligned_cols=68  Identities=9%  Similarity=0.068  Sum_probs=45.2

Q ss_pred             eCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCc-chhhhhhCCCcceeEEEEEeCCeEEEEEeCCChHHHHHHHHHHh
Q 032502           54 SATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDE-LVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKVAAAV  131 (139)
Q Consensus        54 ~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~-~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~l~~~i~~~~  131 (139)
                      +.++|++|.+.+-.|....-   .+....++... .+++.+......+|++..  +|..+     .....|...|.+..
T Consensus        31 ~~~~~p~~~rv~~~L~~~gi---~ye~~~v~~~~~~~~~~~~nP~gkVPvL~~--~g~~l-----~ES~aI~~YL~~~~   99 (267)
T 2ahe_A           31 SIGNCPFSQRLFMILWLKGV---VFSVTTVDLKRKPADLQNLAPGTHPPFITF--NSEVK-----TDVNKIEEFLEEVL   99 (267)
T ss_dssp             SBCSCHHHHHHHHHHHHHTC---CCEEEEECTTSCCHHHHHHSTTCCSCEEEE--TTEEE-----CCHHHHHHHHHHHS
T ss_pred             CCCCCchHHHHHHHHHHcCC---CCEEEEeCcccChHHHHHhCCCCCCCEEEE--CCEEe-----cCHHHHHHHHHHhc
Confidence            57899999998877766421   35566677643 345555556778998874  66533     26677777777654

>1zl9_A GST class-sigma, glutathione S-transferase 5; glutathione transferase, C.elegans; HET: GSH; 2.01A {Caenorhabditis elegans}

Probab=80.47  E-value=8.6  Score=24.27  Aligned_cols=71  Identities=10%  Similarity=0.049  Sum_probs=45.3

Q ss_pred             EEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhhhhh--CCCcceeEEEEEeCCeEEEEEeCCChHHHHHHH
Q 032502           50 IANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTS--WDIKATPTFFFLKDGQQVDKLVGANKPELQKKV  127 (139)
Q Consensus        50 lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~--~~v~~~Pt~~~~~~g~~~~~~~g~~~~~l~~~i  127 (139)
                      +..++.+.|+.|.+.+-.+....-   .+....++.+..+++.+.  .....+|++..  +|..+.     ....|...|
T Consensus         4 ~~Ly~~~~s~~~~~v~~~L~~~gi---~~e~~~v~~~~~~~~~~~~~~P~g~vP~L~~--~g~~l~-----eS~aI~~yL   73 (207)
T 1zl9_A            4 YKLTYFNGRGAGEVSRQIFAYAGQ---QYEDNRVTQEQWPALKETCAAPFGQLPFLEV--DGKKLA-----QSHAIARFL   73 (207)
T ss_dssp             EEEEEESSSGGGHHHHHHHHHHTC---CCEEEEECTTTHHHHHHTTCSTTSCSCEEEE--TTEEEE-----CHHHHHHHH
T ss_pred             eEEEEcCCCchHHHHHHHHHHcCC---CceEEEecHHHHHHHhhccCCCCCCCCEEEE--CCEEEe-----eHHHHHHHH
Confidence            345667789999998877766521   356667776555566555  56778999874  665443     444555555


Q ss_pred             HHH
Q 032502          128 AAA  130 (139)
Q Consensus       128 ~~~  130 (139)
                      .+.
T Consensus        74 ~~~   76 (207)
T 1zl9_A           74 ARE   76 (207)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>3lxz_A Glutathione S-transferase family protein; structural genomics, PP0183, PSI-2, protein structure initiative; 1.76A {Pseudomonas putida} PDB: 3pr8_A*

Probab=80.46  E-value=9.2  Score=24.58  Aligned_cols=71  Identities=4%  Similarity=-0.066  Sum_probs=43.2

Q ss_pred             EEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhhhhhCCCcceeEEEEEeCCeEEEEEeCCChHHHHHHHHH
Q 032502           50 IANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKVAA  129 (139)
Q Consensus        50 lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~l~~~i~~  129 (139)
                      +..++.++|++|.+.+-.+....-   .+..+.++....+++........+|++..  +|..+.     ....|...|.+
T Consensus         3 ~~Ly~~~~sp~~~~v~~~L~~~gi---~ye~~~v~~~~~~~~~~~~P~g~vP~L~~--~~~~l~-----eS~aI~~yL~~   72 (229)
T 3lxz_A            3 LKLYGFSVSNYYNMVKLALLEKGL---TFEEVTFYGGQAPQALEVSPRGKVPVLET--EHGFLS-----ETSVILDYIEQ   72 (229)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHTTC---CEEEEECCCCSCHHHHTTSTTSCSCEEEE--TTEEEE-----SHHHHHHHHHH
T ss_pred             EEEEeCCCCchHHHHHHHHHHcCC---CCEEEecCCCCCHHHHhhCCCCCcCeEEe--CCceee-----cHHHHHHHHHh
Confidence            456778999999988877655411   24444444445566666666778998875  443322     34455555544


Q ss_pred             H
Q 032502          130 A  130 (139)
Q Consensus       130 ~  130 (139)
                      .
T Consensus        73 ~   73 (229)
T 3lxz_A           73 T   73 (229)
T ss_dssp             H
T ss_pred             c
Confidence            3

>3niv_A Glutathione S-transferase; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.30A {Legionella pneumophila subsp}

Probab=80.39  E-value=6.5  Score=25.20  Aligned_cols=70  Identities=7%  Similarity=0.045  Sum_probs=35.6

Q ss_pred             EEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCc------chhhhhhCCCcceeEEEEEeCCeEEEEEeCCChHHHH
Q 032502           51 ANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDE------LVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQ  124 (139)
Q Consensus        51 v~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~------~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~l~  124 (139)
                      ..++.+.|++|.+.+-.++...-   .+....++...      .+++.+......+|++.  .+|..+.     ....|.
T Consensus         4 ~Ly~~~~s~~~~~v~~~L~~~gi---~ye~~~v~~~~~~~~~~~~~~~~~~P~g~vP~L~--~~g~~l~-----eS~aI~   73 (222)
T 3niv_A            4 ILYDYFRSTACYRVRIALNLKKI---AYEKIEVHLVNNGGEQHSLQYHQINPQELVPSLD--INGQILS-----QSMAII   73 (222)
T ss_dssp             CEEECTTCHHHHHHHHHHHHTTC---CCCEEECCC-------------------CCSEEE--ETTEEEE-----CHHHHH
T ss_pred             EEEcCCCCcHHHHHHHHHHHcCC---CcEEEEeccccccccccCHHHHhcCCCCCcCEEE--ECCEEee-----cHHHHH
Confidence            34667899999998877765422   24455555543      33444444567899987  4676544     334444


Q ss_pred             HHHHHH
Q 032502          125 KKVAAA  130 (139)
Q Consensus       125 ~~i~~~  130 (139)
                      ..|.+.
T Consensus        74 ~yL~~~   79 (222)
T 3niv_A           74 DYLEEI   79 (222)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            444443

>1tw9_A Glutathione S-transferase 2; 1.71A {Heligmosomoides polygyrus} SCOP: a.45.1.1 c.47.1.5

Probab=80.24  E-value=8.7  Score=24.16  Aligned_cols=70  Identities=13%  Similarity=0.146  Sum_probs=42.0

Q ss_pred             EEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhhhhhCCCcceeEEEEEeCCeEEEEEeCCChHHHHHHHHH
Q 032502           50 IANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKVAA  129 (139)
Q Consensus        50 lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~l~~~i~~  129 (139)
                      +..++.+.|+.|.+.+-.+....-   .+....++.+..+++.+......+|++..  +|..+.     ....|...|.+
T Consensus         4 ~~Ly~~~~s~~~~~v~~~L~~~gi---~ye~~~v~~~~~~~~~~~~P~g~vP~L~~--~g~~l~-----eS~aI~~yL~~   73 (206)
T 1tw9_A            4 YKLTYFNGRGAGECARQVFALADQ---KYEDVRLTQETFVPLKATFPFGQVPVLEV--DGQQLA-----QSQAICRYLAK   73 (206)
T ss_dssp             EEEEEESSSGGGHHHHHHHHHTTC---CCEEEEECHHHHGGGGGGSTTSCSCEEEE--TTEEEE-----CHHHHHHHHHH
T ss_pred             eEEEEcCCCccHHHHHHHHHHcCC---CceEEEeCHHHHHHHcccCCCCCCCEEEE--CCEEEe-----cHHHHHHHHHH
Confidence            345677789999988876655421   35555666443344545556678998874  665443     34445555544

>1xg8_A Hypothetical protein SA0798; structural genomics, protein structure initative, MCSG, PSI, protein structure initiative; 2.10A {Staphylococcus aureus subsp} SCOP: c.47.1.17

Probab=80.22  E-value=6.6  Score=22.80  Aligned_cols=79  Identities=16%  Similarity=0.353  Sum_probs=52.6

Q ss_pred             EEEEeC-CCChhhhhh------hHhH-HHHHHhCCC--cEEEEEeCCcch--------hhhhhC--CCcceeEEEEEeCC
Q 032502           50 IANFSA-TWCGPCRMI------APFF-SELSEKYPS--LMFLLVDVDELV--------EFSTSW--DIKATPTFFFLKDG  109 (139)
Q Consensus        50 lv~f~~-~~C~~C~~~------~~~l-~~~~~~~~~--v~~~~vd~~~~~--------~~~~~~--~v~~~Pt~~~~~~g  109 (139)
                      ++.+.+ .-|..|..+      ..-| ..+.++||+  +.|..||+...+        +++++.  .-..+|.+++  +|
T Consensus        10 i~VYGAe~iCASCVnaPSSkeTyEWLqAal~RKyp~~~f~~~YIDI~~~~~~l~d~~~~~ae~I~ede~FYPlV~i--nd   87 (111)
T 1xg8_A           10 VVVYGADVICASCVNAPTSKDIYDWLQPLLKRKYPNISFKYTYIDITKDNDNLTDHDLQFIERIEQDELFYPLITM--ND   87 (111)
T ss_dssp             EEEEECSSCCGGGSSSCCHHHHHHHHHHHHHHHCTTSCEEEEEEETTTC---CCHHHHHHHHHHHTTSSCSSEEEE--TT
T ss_pred             EEEEcccccchhccCCCCchhHHHHHHHHHhCcCCCCceEEEEEeccCCccchhHHHHHHHHHHhhccccceEEEE--CC
Confidence            444444 478888754      2223 345788986  888999985322        233322  2457898888  99


Q ss_pred             eEEEEEeCC-ChHHHHHHHHHHhh
Q 032502          110 QQVDKLVGA-NKPELQKKVAAAVD  132 (139)
Q Consensus       110 ~~~~~~~g~-~~~~l~~~i~~~~~  132 (139)
                      .++..  |. ....+.++|++.+.
T Consensus        88 eiVaE--Gnp~LK~I~~~ie~~~~  109 (111)
T 1xg8_A           88 EYVAD--GYIQTKQITRFIDQKLV  109 (111)
T ss_dssp             EEEEE--SSCCHHHHHHHHHHHHH
T ss_pred             EEeec--CCccHHHHHHHHHHHhh
Confidence            98876  77 88888888888764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	139
d1ep7a_	112	c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardt	3e-22
d1ti3a_	113	c.47.1.1 (A:) Thioredoxin {European aspen (Populus	2e-21
d1xfla_	114	c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsi	1e-20
d1gh2a_	107	c.47.1.1 (A:) Thioredoxin-like protein, N-terminal	9e-20
d2ifqa1	105	c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapien	2e-17
d2es7a1	119	c.47.1.20 (A:7-125) Hydrogenase-1 operon protein H	4e-17
d2hfda1	132	c.47.1.20 (A:1-132) Hydrogenase-1 operon protein H	5e-16
d1xwaa_	111	c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila m	4e-15
d1syra_	103	c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plas	5e-15
d2trcp_	217	c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [	1e-14
d1f9ma_	112	c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia olera	3e-14
d1r26a_	113	c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [Tax	3e-14
d2trxa_	108	c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId	1e-12
d1nw2a_	105	c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidoc	8e-12
d1qgva_	137	c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human	4e-11
d1woua_	119	c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxi	7e-11
d1thxa_	108	c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120	7e-11
d1z6na1	166	c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Ps	4e-10
d1nhoa_	85	c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-lik	5e-10
d1a8la2	107	c.47.1.2 (A:120-226) Protein disulfide isomerase,	1e-09
d1dbya_	107	c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardt	4e-09
d1sena_	135	c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19	4e-09
d2djja1	116	c.47.1.2 (A:6-121) Protein disulfide isomerase, PD	9e-09
d1hyua4	96	c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase	9e-09
d2b5xa1	143	c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase	1e-08
d2fy6a1	143	c.47.1.10 (A:33-175) Peptide methionine sulfoxide	1e-08
d2dlxa1	147	c.47.1.24 (A:1-147) UBX domain-containing protein	2e-08
d1i5ga_	144	c.47.1.10 (A:) Tryparedoxin II {Crithidia fascicul	2e-08
d1fo5a_	85	c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-lik	3e-08
d2b5ea1	140	c.47.1.2 (A:365-504) Protein disulfide isomerase,	7e-08
d1zmaa1	115	c.47.1.1 (A:1-115) Bacterocin transport accessory	1e-07
d1meka_	120	c.47.1.2 (A:) Protein disulfide isomerase, PDI {Hu	2e-07
d1lu4a_	134	c.47.1.10 (A:) Soluble secreted antigen MPT53 {Myc	8e-07
d1z5ye1	136	c.47.1.10 (E:49-184) Thioredoxin-like protein CcmG	3e-06
d2c0ga2	122	c.47.1.7 (A:1024-1145) Windbeutel, N-terminal doma	1e-05
d1knga_	144	c.47.1.10 (A:) Thioredoxin-like protein CcmG (CycY	2e-05
d1wjka_	100	c.47.1.1 (A:) Thioredoxin-like structure containin	4e-05
d1o73a_	144	c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei	5e-05
d2b5ea4	119	c.47.1.2 (A:23-141) Protein disulfide isomerase, P	6e-05
d2fwha1	117	c.47.1.1 (A:428-544) Thiol:disulfide interchange p	6e-05
d1zzoa1	134	c.47.1.10 (A:45-178) Lipoprotein DsbF {Mycobacteri	3e-04
d1g7ea_	122	c.47.1.7 (A:) Endoplasmic reticulum protein ERP29,	7e-04
d1a8ya1	124	c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctola	0.004

>d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]} Length = 112

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

 Score = 82.9 bits (204), Expect = 3e-22
 Identities = 48/112 (42%), Positives = 72/112 (64%), Gaps = 4/112 (3%)

Query: 23  GGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP-SLMFL 81
           GG+V ++ +K  WD ++++  +E K ++ +F+ATWCGPC+MIAP F  LS  Y   ++FL
Sbjct: 1   GGSVIVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFL 60

Query: 82  LVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQ---KKVAAA 130
            VDVD +   + +  I A PTF   KDG + D LVGA++ +L+    K AAA
Sbjct: 61  KVDVDAVAAVAEAAGITAMPTFHVYKDGVKADDLVGASQDKLKALVAKHAAA 112

>d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus tremula), thioredoxin H [TaxId: 113636]} Length = 113

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: European aspen (Populus tremula), thioredoxin H [TaxId: 113636]

 Score = 81.0 bits (199), Expect = 2e-21
 Identities = 49/105 (46%), Positives = 70/105 (66%)

Query: 24  GNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLV 83
           G V    T D W +   +     K+++ +F+A+WC PC+MIAP F+EL++K+P++ FL V
Sbjct: 4   GQVIACHTVDTWKEHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFPNVTFLKV 63

Query: 84  DVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKVA 128
           DVDEL   +  W+++A PTF FLKDG+ VDK VGA+K  L   VA
Sbjct: 64  DVDELKAVAEEWNVEAMPTFIFLKDGKLVDKTVGADKDGLPTLVA 108

>d1xfla_ c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 114

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 78.7 bits (193), Expect = 1e-20
 Identities = 49/108 (45%), Positives = 78/108 (72%)

Query: 24  GNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLV 83
           G V    T + W++++ +A++   +V+ +F+A+WCGPCR IAPFF++L++K P+++FL V
Sbjct: 6   GQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPNVLFLKV 65

Query: 84  DVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKVAAAV 131
           D DEL   ++ W I+A PTF FLK+G+ +DK+VGA K ELQ  +A  +
Sbjct: 66  DTDELKSVASDWAIQAMPTFMFLKEGKILDKVVGAKKDELQSTIAKHL 113

>d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.3 bits (187), Expect = 9e-20
 Identities = 35/107 (32%), Positives = 60/107 (56%), Gaps = 2/107 (1%)

Query: 26  VSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDV 85
           V  V +   +  ++S A    ++ +  F+   CGPC  IAP FS +S KYP  +FL VDV
Sbjct: 3   VKPVGSDPDFQPELSGAG--SRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDV 60

Query: 86  DELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKVAAAVD 132
            +    + + +I ATPTF F ++  ++D+  GA+   L++K+   ++
Sbjct: 61  HQCQGTAATNNISATPTFQFFRNKVRIDQYQGADAVGLEEKIKQHLE 107

>d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.2 bits (171), Expect = 2e-17
 Identities = 45/106 (42%), Positives = 68/106 (64%), Gaps = 2/106 (1%)

Query: 26  VSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDV 85
           V  + +K  + + +  A    K+V+ +FSATWCGPC+MI PFF  LSEKY +++FL VDV
Sbjct: 2   VKQIESKTAFQEALDAA--GDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDV 59

Query: 86  DELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKVAAAV 131
           D+  + ++  ++K  PTF F K GQ+V +  GANK +L+  +   V
Sbjct: 60  DDCQDVASECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATINELV 105

>d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE {Salmonella typhimurium [TaxId: 90371]} Length = 119

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Salmonella typhimurium [TaxId: 90371]

 Score = 70.0 bits (171), Expect = 4e-17
 Identities = 13/94 (13%), Positives = 32/94 (34%), Gaps = 3/94 (3%)

Query: 42  ASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLL--VDVDELVEFSTSWDIKA 99
                 +++ +                +EL  ++P   + +   D+++       ++++ 
Sbjct: 26  KRVGDGVILLSSDPRRTPEVSDNPVMIAELLREFPQFDWQVAVADLEQSEAIGDRFNVRR 85

Query: 100 TPTFFFLKDGQQVDKLVGA-NKPELQKKVAAAVD 132
            P      DG+    L G     EL   + + VD
Sbjct: 86  FPATLVFTDGKLRGALSGIHPWAELLTLMRSIVD 119

>d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE {Escherichia coli [TaxId: 562]} Length = 132

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Escherichia coli [TaxId: 562]

 Score = 67.4 bits (164), Expect = 5e-16
 Identities = 12/94 (12%), Positives = 26/94 (27%), Gaps = 3/94 (3%)

Query: 42  ASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLL--VDVDELVEFSTSWDIKA 99
                 +V+ +                 EL  ++P   + +   D+++       + +  
Sbjct: 32  TQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEAIGDRFGVFR 91

Query: 100 TPTFFFLKDGQQVDKLVGA-NKPELQKKVAAAVD 132
            P       G     L G     EL   +   V+
Sbjct: 92  FPATLVFTGGNYRGVLNGIHPWAELINLMRGLVE 125

>d1xwaa_ c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 111

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 64.5 bits (156), Expect = 4e-15
 Identities = 44/109 (40%), Positives = 69/109 (63%), Gaps = 3/109 (2%)

Query: 22  AGGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP-SLMF 80
           A   V  V  K   D ++++AS  GK+V+ +F ATWCGPC+MI+P   ELS ++  +++ 
Sbjct: 3   AAAMVYQVKDKADLDGQLTKAS--GKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVV 60

Query: 81  LLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKVAA 129
           L VDVDE  + +  ++I + PTF FLK+G +V++  GAN   L+  + A
Sbjct: 61  LKVDVDECEDIAMEYNISSMPTFVFLKNGVKVEEFAGANAKRLEDVIKA 109

>d1syra_ c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 103

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]

 Score = 64.1 bits (155), Expect = 5e-15
 Identities = 40/102 (39%), Positives = 64/102 (62%), Gaps = 4/102 (3%)

Query: 26  VSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDV 85
           V +VT++  +D  +     + ++VI +F A WCGPC+ IAPF+ E S+ Y  ++F+ VDV
Sbjct: 2   VKIVTSQAEFDSII----SQNELVIVDFFAEWCGPCKRIAPFYEECSKTYTKMVFIKVDV 57

Query: 86  DELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKV 127
           DE+ E +   +I + PTF   K+G  VD L+GAN   L++ +
Sbjct: 58  DEVSEVTEKENITSMPTFKVYKNGSSVDTLLGANDSALKQLI 99

>d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 217

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Phosducin
domain: Phosducin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 65.8 bits (160), Expect = 1e-14
 Identities = 14/97 (14%), Positives = 32/97 (32%), Gaps = 2/97 (2%)

Query: 24  GNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLV 83
           G V  + T + + + + +  K    ++ N        C  +      L+ +YP + F  +
Sbjct: 99  GFVYELETGEQFLETIEKEQK-VTTIVVNIYEDGVRGCDALNSSLECLAAEYPMVKFCKI 157

Query: 84  DVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANK 120
                      +     PT    K G+ +   +   +
Sbjct: 158 RASN-TGAGDRFSSDVLPTLLVYKGGELISNFISVAE 193

>d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]} Length = 112

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]

 Score = 62.5 bits (151), Expect = 3e-14
 Identities = 34/113 (30%), Positives = 59/113 (52%), Gaps = 4/113 (3%)

Query: 19  VEFAGGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSL 78
           +E   G V+ V  KD +   +  A    K V+ +    WCGPC+ +AP + +L+E+Y  +
Sbjct: 1   MEAIVGKVTEVN-KDTFWPIVKAAGD--KPVVLDMFTQWCGPCKAMAPKYEKLAEEYLDV 57

Query: 79  MFLLVDVDELV-EFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKVAAA 130
           +FL +D ++     +    I+  PTF  LK+   V ++ GA   +L + + AA
Sbjct: 58  IFLKLDCNQENKTLAKELGIRVVPTFKILKENSVVGEVTGAKYDKLLEAIQAA 110

>d1r26a_ c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [TaxId: 5691]} Length = 113

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Trypanosoma brucei [TaxId: 5691]

 Score = 62.2 bits (150), Expect = 3e-14
 Identities = 28/107 (26%), Positives = 54/107 (50%), Gaps = 4/107 (3%)

Query: 25  NVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVD 84
           +V  V + + +   M     E  + +A F+A WCGPC+ I     +++ ++P++ F  VD
Sbjct: 9   SVVDVYSVEQFRNIM----SEDILTVAWFTAVWCGPCKTIERPMEKIAYEFPTVKFAKVD 64

Query: 85  VDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKVAAAV 131
            D   E  +   +   PTF   + G+ +  ++GAN   L++K+   +
Sbjct: 65  ADNNSEIVSKCRVLQLPTFIIARSGKMLGHVIGANPGMLRQKLRDII 111

>d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]} Length = 108

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Escherichia coli [TaxId: 562]

 Score = 58.3 bits (140), Expect = 1e-12
 Identities = 30/103 (29%), Positives = 55/103 (53%), Gaps = 5/103 (4%)

Query: 31  TKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVDELV 89
           T D +D    +  K    ++ +F A WCGPC+MIAP   E++++Y   L    +++D+  
Sbjct: 8   TDDSFDT---DVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNP 64

Query: 90  EFSTSWDIKATPTFFFLKDGQQVDKLVGA-NKPELQKKVAAAV 131
             +  + I+  PT    K+G+     VGA +K +L++ + A +
Sbjct: 65  GTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDANL 107

>d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]} Length = 105

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]

 Score = 55.9 bits (134), Expect = 8e-12
 Identities = 33/103 (32%), Positives = 56/103 (54%), Gaps = 2/103 (1%)

Query: 31  TKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKY-PSLMFLLVDVDELV 89
           T  + D    +A +  K V+ +F A WCGPCRM+AP   E +E +   +    ++VDE  
Sbjct: 2   TMTLTDANFQQAIQGDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENP 61

Query: 90  EFSTSWDIKATPTFFFLKDGQQVDKLVGAN-KPELQKKVAAAV 131
           E ++ + I + PT    K G+ V +L+G   K +L+ ++A  +
Sbjct: 62  ETTSQFGIMSIPTLILFKGGEPVKQLIGYQPKEQLEAQLADVL 104

>d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo sapiens) [TaxId: 9606]} Length = 137

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: spliceosomal protein U5-15Kd
domain: spliceosomal protein U5-15Kd
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.8 bits (131), Expect = 4e-11
 Identities = 19/92 (20%), Positives = 39/92 (42%), Gaps = 4/92 (4%)

Query: 28  LVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLM-FLLVDVD 86
           L     + DQ +   S+E ++V+  F   W   C  +      ++EK  +     LVD+ 
Sbjct: 7   LHNGWQV-DQAI--LSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDIT 63

Query: 87  ELVEFSTSWDIKATPTFFFLKDGQQVDKLVGA 118
           E+ +F+  +++    T  F    + +   +G 
Sbjct: 64  EVPDFNKMYELYDPCTVMFFFRNKHIMIDLGT 95

>d1woua_ c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxin containing protein Txnl5) {Human (Homo sapiens) [TaxId: 9606]} Length = 119

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Txnl5-like
domain: Putative 42-9-9 protein (thioredoxin containing protein Txnl5)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.7 bits (128), Expect = 7e-11
 Identities = 18/112 (16%), Positives = 37/112 (33%), Gaps = 17/112 (15%)

Query: 29  VTTKDIWDQKMSEASKEGKIVIANFSAT-------WCGPCRMIAPFFSELSEKYPS-LMF 80
           V+  + + + + +    GK + A F+ +       WC  C    P   E  +      +F
Sbjct: 6   VSGFEEFHRAVEQH--NGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISEGCVF 63

Query: 81  LLVDVDELVE-------FSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQK 125
           +   V E          F  +  + A PT       Q++ +        ++ 
Sbjct: 64  IYCQVGEKPYWKDPNNDFRKNLKVTAVPTLLKYGTPQKLVESECLQANLVEM 115

>d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]} Length = 108

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Anabaena sp., pcc 7120 [TaxId: 1167]

 Score = 53.3 bits (127), Expect = 7e-11
 Identities = 21/95 (22%), Positives = 45/95 (47%), Gaps = 2/95 (2%)

Query: 40  SEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLM-FLLVDVDELVEFSTSWDIK 98
           SE  K  + V+  F A+WCGPC++++P  +  +  Y   +  + +++D        + ++
Sbjct: 14  SEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEIDPNPTTVKKYKVE 73

Query: 99  ATPTFFFLKDGQQVDKLVGA-NKPELQKKVAAAVD 132
             P    +K  Q +D   G  +K +L   +   ++
Sbjct: 74  GVPALRLVKGEQILDSTEGVISKDKLLSFLDTHLN 108

>d1z6na1 c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Pseudomonas aeruginosa [TaxId: 287]} Length = 166

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Hypothetical protein PA1234
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 52.7 bits (125), Expect = 4e-10
 Identities = 7/84 (8%), Positives = 19/84 (22%)

Query: 36  DQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSW 95
                    E +  +      WC  C++            P++   ++      +     
Sbjct: 44  ALTERLQRIERRYRLLVAGEMWCPDCQINLAALDFAQRLQPNIELAIISKGRAEDDLRQR 103

Query: 96  DIKATPTFFFLKDGQQVDKLVGAN 119
                     +    +   L+G  
Sbjct: 104 LALERIAIPLVLVLDEEFNLLGRF 127

>d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 85

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH807, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 50.9 bits (121), Expect = 5e-10
 Identities = 15/87 (17%), Positives = 31/87 (35%), Gaps = 6/87 (6%)

Query: 48  IVIANFSATWCGPCRMIAPFF-SELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFL 106
           + I  F++  C  C M          E    +    +D+    E +  + + A P     
Sbjct: 3   VNIEVFTSPTCPYCPMAIEVVDEAKKEFGDKIDVEKIDIMVDREKAIEYGLMAVPAIAIN 62

Query: 107 KDGQQVDKLVGA-NKPELQKKVAAAVD 132
                  + VGA ++ EL + +   ++
Sbjct: 63  GVV----RFVGAPSREELFEAINDEME 85

>d1a8la2 c.47.1.2 (A:120-226) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 107

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

 Score = 49.9 bits (118), Expect = 1e-09
 Identities = 14/93 (15%), Positives = 37/93 (39%), Gaps = 6/93 (6%)

Query: 45  EGKIVIANFSATWCGPCRMIAPFFSELSEKY-----PSLMFLLVDVDELVEFSTSWDIKA 99
           +  + I  F    C  C +      + + +        ++  +V+  E  E++  +++ A
Sbjct: 14  DQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEYPEWADQYNVMA 73

Query: 100 TPTFFFLKDGQQVDKLVGA-NKPELQKKVAAAV 131
            P      +G+   +  GA  +    +K+ +A+
Sbjct: 74  VPKIVIQVNGEDRVEFEGAYPEKMFLEKLLSAL 106

>d1dbya_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]} Length = 107

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

 Score = 48.7 bits (115), Expect = 4e-09
 Identities = 26/95 (27%), Positives = 50/95 (52%), Gaps = 2/95 (2%)

Query: 40  SEASKEGKIVIANFSATWCGPCRMIAPFFSELS-EKYPSLMFLLVDVDELVEFSTSWDIK 98
           +   +    V+ +F A WCGPCR+IAP   E++ E    L  + ++ DE    ++ + I+
Sbjct: 13  NVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDESPNVASEYGIR 72

Query: 99  ATPTFFFLKDGQQVDKLVGA-NKPELQKKVAAAVD 132
           + PT    K G++ + ++GA  K  + + V   ++
Sbjct: 73  SIPTIMVFKGGKKCETIIGAVPKATIVQTVEKYLN 107

>d1sena_ c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19 {Human (Homo sapiens) [TaxId: 9606]} Length = 135

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein p19, TLP19
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.5 bits (117), Expect = 4e-09
 Identities = 23/110 (20%), Positives = 44/110 (40%), Gaps = 5/110 (4%)

Query: 35  WDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSL---MFLLVDVDELVEF 91
            +    EA+  G  ++     +WCG C+ + P F+E +E        + + ++ +E  + 
Sbjct: 14  LEDGKKEAAASGLPLMVIIHKSWCGACKALKPKFAESTEISELSHNFVMVNLEDEEEPKD 73

Query: 92  ST-SWDIKATPTFFFL-KDGQQVDKLVGANKPELQKKVAAAVDSVVPSQK 139
              S D    P   FL   G+   +++  N     K    + + VV   K
Sbjct: 74  EDFSPDGGYIPRILFLDPSGKVHPEIINENGNPSYKYFYVSAEQVVQGMK 123

>d2djja1 c.47.1.2 (A:6-121) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]} Length = 116

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

 Score = 48.3 bits (114), Expect = 9e-09
 Identities = 25/111 (22%), Positives = 44/111 (39%), Gaps = 10/111 (9%)

Query: 24  GNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFL-- 81
           G V++V  K+  +        + K V+  F A WCG C+ +AP + EL   Y    F   
Sbjct: 2   GPVTVVVAKNYNE----IVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDR 57

Query: 82  -LVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGA---NKPELQKKVA 128
            ++   +        +I+  PT      G +   +  +      +L K +A
Sbjct: 58  VVIAKVDATANDVPDEIQGFPTIKLYPAGAKGQPVTYSGSRTVEDLIKFIA 108

>d1hyua4 c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 96

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

 Score = 47.8 bits (113), Expect = 9e-09
 Identities = 15/95 (15%), Positives = 32/95 (33%), Gaps = 7/95 (7%)

Query: 36  DQKMSEASK--EGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFST 93
            Q + E  +  +G      + +  C  C  +    + ++   P +    +D        T
Sbjct: 3   AQSLLEQIRDIDGDFEFETYYSLSCHNCPDVVQALNLMAVLNPRIKHTAIDGGTFQNEIT 62

Query: 94  SWDIKATPTFFFLKDGQQVDKLVGA-NKPELQKKV 127
             ++   P  F   +G++     G     E+  KV
Sbjct: 63  ERNVMGVPAVFV--NGKEFG--QGRMTLTEIVAKV 93

>d2b5xa1 c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase YkuV {Bacillus subtilis [TaxId: 1423]} Length = 143

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: thiol:disulfide oxidoreductase YkuV
species: Bacillus subtilis [TaxId: 1423]

 Score = 48.8 bits (115), Expect = 1e-08
 Identities = 19/120 (15%), Positives = 36/120 (30%), Gaps = 30/120 (25%)

Query: 40  SEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMF------------------- 80
            E     K  + +F +  C  C+   P  +E  +KY   +                    
Sbjct: 23  REQLIGEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQDQLNVVAVHMPRSEDDLDPGKIK 82

Query: 81  ---------LLVDVDELVEFSTSWDIKATPTFFFL-KDGQQVDKLVGA-NKPELQKKVAA 129
                      + VD     + +++ +  P ++   K GQ      G      L+K+V  
Sbjct: 83  ETAAEHDITQPIFVDSDHALTDAFENEYVPAYYVFDKTGQLRHFQAGGSGMKMLEKRVNR 142

>d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain {Neisseria meningitidis serogroup A [TaxId: 65699]} Length = 143

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain
species: Neisseria meningitidis serogroup A [TaxId: 65699]

 Score = 48.4 bits (114), Expect = 1e-08
 Identities = 21/133 (15%), Positives = 41/133 (30%), Gaps = 32/133 (24%)

Query: 27  SLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLV--- 83
           +L T K   ++  S   K+ K  +  F A+WC  C        + ++        L+   
Sbjct: 4   TLSTLKTADNRPASVYLKKDKPTLIKFWASWCPLCLSELGQTEKWAQDAKFSSANLITVA 63

Query: 84  ---------------------------DVDELVEFSTSWDIKATPTFFFL-KDGQQVDKL 115
                                        D     + S +I   P++  + KDG     +
Sbjct: 64  SPGFLHEKKDGDFQKWYAGLNYPKLPVVTDNGGTIAQSLNISVYPSWALIGKDGDVQRIV 123

Query: 116 VGA-NKPELQKKV 127
            G+ N+ +    +
Sbjct: 124 KGSINEAQALALI 136

>d2dlxa1 c.47.1.24 (A:1-147) UBX domain-containing protein 7 {Human (Homo sapiens) [TaxId: 9606]} Length = 147

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: UAS domain
domain: UBX domain-containing protein 7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.8 bits (113), Expect = 2e-08
 Identities = 10/107 (9%), Positives = 32/107 (29%), Gaps = 8/107 (7%)

Query: 35  WDQKMSEASKEGKIVIANFSATWCGPCRMIA------PFFSELSEKYPSLMFLLVDVDEL 88
           ++        + K ++ N        C+ +            +  ++     +  D +E 
Sbjct: 31  FETAKECGQMQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIREHFIFWQVYHDSEEG 90

Query: 89  VEFSTSWDIKATPTFFFL--KDGQQVDKLVGANKPELQKKVAAAVDS 133
             +   + +   P    L  + GQ++ +    +      +V   +  
Sbjct: 91  QRYIQFYKLGDFPYVSILDPRTGQKLVEWHQLDVSSFLDQVTGFLGE 137

>d1i5ga_ c.47.1.10 (A:) Tryparedoxin II {Crithidia fasciculata [TaxId: 5656]} Length = 144

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin II
species: Crithidia fasciculata [TaxId: 5656]

 Score = 47.9 bits (113), Expect = 2e-08
 Identities = 19/82 (23%), Positives = 32/82 (39%), Gaps = 3/82 (3%)

Query: 37  QKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLM---FLLVDVDELVEFST 93
             ++  S  GK V   FSA+WC P R   P   +  + +        +L+  DE  E   
Sbjct: 19  ADIALPSLAGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDESAEDFK 78

Query: 94  SWDIKATPTFFFLKDGQQVDKL 115
            +  K        +D + ++ L
Sbjct: 79  DYYAKMPWLALPFEDRKGMEFL 100

>d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 85

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MJ0307, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 46.1 bits (108), Expect = 3e-08
 Identities = 17/87 (19%), Positives = 35/87 (40%), Gaps = 6/87 (6%)

Query: 47  KIVIANFSATWCGPCRMIAPFFSELSEK-YPSLMFLLVDVDELVEFSTSWDIKATPTFFF 105
           K+ I  F++  C  C        E++ +   ++    ++V E  + +  + I A PT   
Sbjct: 3   KVKIELFTSPMCPHCPAAKRVVEEVANEMPDAVEVEYINVMENPQKAMEYGIMAVPTIVI 62

Query: 106 LKDGQQVDKLVGA-NKPELQKKVAAAV 131
             D     + +GA  K  L + +   +
Sbjct: 63  NGDV----EFIGAPTKEALVEAIKKRL 85

>d2b5ea1 c.47.1.2 (A:365-504) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 140

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.4 bits (109), Expect = 7e-08
 Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 2/79 (2%)

Query: 40  SEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP--SLMFLLVDVDELVEFSTSWDI 97
              +   K V+  + A WCG C+ +AP + EL++ Y   +   L+  +D          I
Sbjct: 24  EIVNDPKKDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKLDHTENDVRGVVI 83

Query: 98  KATPTFFFLKDGQQVDKLV 116
           +  PT      G++ + +V
Sbjct: 84  EGYPTIVLYPGGKKSESVV 102

>d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein Bta {Streptococcus pneumoniae [TaxId: 1313]} Length = 115

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Bacterocin transport accessory protein Bta
species: Streptococcus pneumoniae [TaxId: 1313]

 Score = 45.3 bits (106), Expect = 1e-07
 Identities = 15/99 (15%), Positives = 32/99 (32%), Gaps = 9/99 (9%)

Query: 29  VTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDEL 88
           VTT     + +     + +          C  CR  A   S +  +  + ++ +   +  
Sbjct: 13  VTTVVRAQEAL----DKKETATFFIGRKTCPYCRKFAGTLSGVVAETKAHIYFINSEEPS 68

Query: 89  VE-----FSTSWDIKATPTFFFLKDGQQVDKLVGANKPE 122
                  F + + I   P F  + DGQ   +   +   +
Sbjct: 69  QLNDLQAFRSRYGIPTVPGFVHITDGQINVRCDSSMSAQ 107

>d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]} Length = 120

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.4 bits (104), Expect = 2e-07
 Identities = 19/91 (20%), Positives = 36/91 (39%), Gaps = 4/91 (4%)

Query: 32  KDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFF----SELSEKYPSLMFLLVDVDE 87
             +     +EA    K ++  F A WCG C+ +AP +     +L  +   +    VD  E
Sbjct: 10  LVLRKSNFAEALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATE 69

Query: 88  LVEFSTSWDIKATPTFFFLKDGQQVDKLVGA 118
             + +  + ++  PT  F ++G         
Sbjct: 70  ESDLAQQYGVRGYPTIKFFRNGDTASPKEYT 100

>d1lu4a_ c.47.1.10 (A:) Soluble secreted antigen MPT53 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 134

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Soluble secreted antigen MPT53
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 43.4 bits (101), Expect = 8e-07
 Identities = 28/141 (19%), Positives = 48/141 (34%), Gaps = 34/141 (24%)

Query: 15  GEHPVEFAGGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEK 74
            +  ++F        T   +       AS +GK  +  F   WC  C   AP  S+++  
Sbjct: 1   ADERLQF--------TATTLSGAPFDGASLQGKPAVLWFWTPWCPFCNAEAPSLSQVAAA 52

Query: 75  YPSLMFLLVD----------------------VDELVEFSTSWDIKATPTFFFL-KDGQ- 110
            P++ F+ +                        D        +++   P F F   DG  
Sbjct: 53  NPAVTFVGIATRADVGAMQSFVSKYNLNFTNLNDADGVIWARYNVPWQPAFVFYRADGTS 112

Query: 111 -QVDKLVGA-NKPELQKKVAA 129
             V+    A ++ EL  +VAA
Sbjct: 113 TFVNNPTAAMSQDELSGRVAA 133

>d1z5ye1 c.47.1.10 (E:49-184) Thioredoxin-like protein CcmG (CycY, DsbE) {Escherichia coli [TaxId: 562]} Length = 136

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Escherichia coli [TaxId: 562]

 Score = 41.9 bits (97), Expect = 3e-06
 Identities = 18/116 (15%), Positives = 38/116 (32%), Gaps = 23/116 (19%)

Query: 40  SEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKA 99
           ++   +GK V+ N  ATWC   R    + ++LS +   ++ +    D     S   ++  
Sbjct: 14  ADVLTQGKPVLLNVWATWCPTSRAEHQYLNQLSAQGIRVVGMNYKDDRQKAISWLKELGN 73

Query: 100 TP----------------------TFFFLKDGQQVDKLVGA-NKPELQKKVAAAVD 132
                                   TF    +G    +  G  N    ++++    +
Sbjct: 74  PYALSLFDGDGMLGLDLGVYGAPETFLIDGNGIIRYRHAGDLNPRVWEEEIKPLWE 129

>d2c0ga2 c.47.1.7 (A:1024-1145) Windbeutel, N-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 122

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Windbeutel, N-terminal domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 40.1 bits (93), Expect = 1e-05
 Identities = 11/88 (12%), Positives = 21/88 (23%), Gaps = 11/88 (12%)

Query: 44  KEGKIVIANFSATWCGPCRMIAP--FFSELSEKYPSLMFLLVDVD--------ELVEFST 93
           +     +  F        +  A   F     +    L+   V V          L +   
Sbjct: 17  ERFPYSVVKFDIASPYGEKHEAFTAFSKSAHKATKDLLIATVGVKDYGELENKALGDRYK 76

Query: 94  SWDIKATPTFFFLKDGQQVDKLVGANKP 121
               K  P+ F  K        + ++  
Sbjct: 77  VD-DKNFPSIFLFKGNADEYVQLPSHVD 103

>d1knga_ c.47.1.10 (A:) Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyrhizobium japonicum [TaxId: 375]} Length = 144

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Bradyrhizobium japonicum [TaxId: 375]

 Score = 39.7 bits (91), Expect = 2e-05
 Identities = 25/137 (18%), Positives = 47/137 (34%), Gaps = 24/137 (17%)

Query: 20  EFAGGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLM 79
           + A   +  +   ++    +  A+ +GK+ + N  A+WC PC   AP  +EL +     +
Sbjct: 5   QTALPPLEGLQADNVQVPGLDPAAFKGKVSLVNVWASWCVPCHDEAPLLTELGKDKRFQL 64

Query: 80  FLL---VDVDELVEFSTSWDIKATP--------------------TFFFLKDGQQVDKLV 116
             +      D    F   +                          TF   ++G  V KLV
Sbjct: 65  VGINYKDAADNARRFLGRYGNPFGRVGVDANGRASIEWGVYGVPETFVVGREGTIVYKLV 124

Query: 117 GA-NKPELQKKVAAAVD 132
           G      L+  +   ++
Sbjct: 125 GPITPDNLRSVLLPQME 141

>d1wjka_ c.47.1.1 (A:) Thioredoxin-like structure containing protein C330018D20Rik {Mouse (Mus musculus) [TaxId: 10090]} Length = 100

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like structure containing protein C330018D20Rik
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.8 bits (87), Expect = 4e-05
 Identities = 13/90 (14%), Positives = 30/90 (33%), Gaps = 7/90 (7%)

Query: 41  EASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKAT 100
            AS     V+  F+   C  C           +++  L  + + + E   +   +     
Sbjct: 10  SASNRALPVLTLFTKAPCPLCDEAKEVLQPYKDRFI-LQEVDITLPENSTWYERYKFDIP 68

Query: 101 PTFFFLKDGQQVDKLVGA-NKPELQKKVAA 129
                   GQ +  ++   N  +L+K++  
Sbjct: 69  VFHLN---GQFL--MMHRVNTSKLEKQLRK 93

>d1o73a_ c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei brucei [TaxId: 5702]} Length = 144

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Trypanosoma brucei brucei [TaxId: 5702]

 Score = 38.4 bits (88), Expect = 5e-05
 Identities = 25/112 (22%), Positives = 40/112 (35%), Gaps = 28/112 (25%)

Query: 29  VTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS---LMFLLVDV 85
            T       ++S  S  GK V   FSA+WC PCR   P  +E  EK+        +L+  
Sbjct: 11  ATNLLSKSGEVSLGSLVGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVAKNFEVVLISW 70

Query: 86  DE------------------------LVEFSTSWDIKATPTFFFL-KDGQQV 112
           DE                        + E   ++ +++ PT   +  D   +
Sbjct: 71  DENESDFHDYYGKMPWLALPFDQRSTVSELGKTFGVESIPTLITINADTGAI 122

>d2b5ea4 c.47.1.2 (A:23-141) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 119

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.0 bits (87), Expect = 6e-05
 Identities = 17/90 (18%), Positives = 36/90 (40%), Gaps = 2/90 (2%)

Query: 31  TKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKY--PSLMFLLVDVDEL 88
              +     +E  +   +V+A F A WCG C+ +AP + + +E     ++    +D  E 
Sbjct: 12  VVKLATDSFNEYIQSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKNITLAQIDCTEN 71

Query: 89  VEFSTSWDIKATPTFFFLKDGQQVDKLVGA 118
            +     +I   P+    K+    + +   
Sbjct: 72  QDLCMEHNIPGFPSLKIFKNSDVNNSIDYE 101

>d2fwha1 c.47.1.1 (A:428-544) Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) {Escherichia coli [TaxId: 562]} Length = 117

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma)
species: Escherichia coli [TaxId: 562]

 Score = 38.0 bits (87), Expect = 6e-05
 Identities = 22/104 (21%), Positives = 40/104 (38%), Gaps = 12/104 (11%)

Query: 29  VTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLL------ 82
           + T D  +Q + EA  +GK V+ +  A WC  C+    +     +   +L   +      
Sbjct: 7   IKTVDELNQALVEA--KGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALADTVLLQANV 64

Query: 83  -VDVDELVEFSTSWDIKATPT-FFFLKDGQQVD--KLVGANKPE 122
             +  + V      ++   PT  FF   GQ+    ++ G    E
Sbjct: 65  TANDAQDVALLKHLNVLGLPTILFFDGQGQEHPQARVTGFMDAE 108

>d1zzoa1 c.47.1.10 (A:45-178) Lipoprotein DsbF {Mycobacterium tuberculosis [TaxId: 1773]} Length = 134

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Lipoprotein DsbF
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 36.6 bits (83), Expect = 3e-04
 Identities = 21/124 (16%), Positives = 40/124 (32%), Gaps = 24/124 (19%)

Query: 30  TTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKY-------------- 75
           + K +        S  GK  +  F A WC  C+  AP   +++  +              
Sbjct: 9   SAKTLDGHDFHGESLLGKPAVLWFWAPWCPTCQGEAPVVGQVAASHPEVTFVGVAGLDQV 68

Query: 76  ---------PSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGA-NKPELQK 125
                      +       D       ++ +   P + F+     VD + G  ++ EL +
Sbjct: 69  PAMQEFVNKYPVKTFTQLADTDGSVWANFGVTQQPAYAFVDPHGNVDVVRGRMSQDELTR 128

Query: 126 KVAA 129
           +V A
Sbjct: 129 RVTA 132

>d1g7ea_ c.47.1.7 (A:) Endoplasmic reticulum protein ERP29, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 122

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Endoplasmic reticulum protein ERP29, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.0 bits (80), Expect = 7e-04
 Identities = 11/78 (14%), Positives = 26/78 (33%), Gaps = 8/78 (10%)

Query: 44  KEGKIVIANFSATWCG-----PCRMIAPFFSELSEKYPSLM-FLLVDVDELVEFSTS--W 95
            + K V+  F   +         + +A   +   +   + +          +E S     
Sbjct: 19  PKSKFVLVKFDTQYPYGEKQDEFKRLAENSASSDDLLVAEVGISDYGDKLNMELSEKYKL 78

Query: 96  DIKATPTFFFLKDGQQVD 113
           D ++ P F+  +DG   +
Sbjct: 79  DKESYPVFYLFRDGDFEN 96

>d1a8ya1 c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score = 32.9 bits (74), Expect = 0.004
 Identities = 11/121 (9%), Positives = 37/121 (30%), Gaps = 12/121 (9%)

Query: 15  GEHPVEFAGGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCG------PCRMIAPFF 68
           G    E+ G +  +      +        K+ +++   +               M     
Sbjct: 1   GLDFPEYDGVDRVINVNAKNYKNVF----KKYEVLALLYHEPPEDDKASQRQFEMEELIL 56

Query: 69  SELSE--KYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKK 126
              ++  +   + F LVD ++    +    +    + +  K+ + ++     +   L + 
Sbjct: 57  ELAAQVLEDKGVGFGLVDSEKDAAVAKKLGLTEEDSIYVFKEDEVIEYDGEFSADTLVEF 116

Query: 127 V 127
           +
Sbjct: 117 L 117

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	139
d1xfla_	114	Thioredoxin {Thale cress (Arabidopsis thaliana) [T	99.97
d1ep7a_	112	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	99.97
d1ti3a_	113	Thioredoxin {European aspen (Populus tremula), thi	99.96
d2ifqa1	105	Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1r26a_	113	Thioredoxin {Trypanosoma brucei [TaxId: 5691]}	99.96
d1gh2a_	107	Thioredoxin-like protein, N-terminal domain {Human	99.96
d1xwaa_	111	Thioredoxin {Fruit fly (Drosophila melanogaster) [	99.95
d1syra_	103	Thioredoxin {Malarial parasite (Plasmodium falcipa	99.95
d1thxa_	108	Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}	99.95
d1nw2a_	105	Thioredoxin {Alicyclobacillus acidocaldarius, form	99.95
d1dbya_	107	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	99.95
d2trxa_	108	Thioredoxin {Escherichia coli [TaxId: 562]}	99.94
d1fb6a_	104	Thioredoxin {Spinach (Spinacia oleracea), thioredo	99.94
d1f9ma_	112	Thioredoxin {Spinach (Spinacia oleracea), thioredo	99.94
d1qgva_	137	spliceosomal protein U5-15Kd {Human (Homo sapiens)	99.92
d2hfda1	132	Hydrogenase-1 operon protein HyaE {Escherichia col	99.9
d1a8la2	107	Protein disulfide isomerase, PDI {Archaeon Pyrococ	99.9
d2b5ea4	119	Protein disulfide isomerase, PDI {Baker's yeast (S	99.9
d2es7a1	119	Hydrogenase-1 operon protein HyaE {Salmonella typh	99.89
d1fo5a_	85	MJ0307, thioredoxin/glutaredoxin-like protein {Arc	99.88
d1meka_	120	Protein disulfide isomerase, PDI {Human (Homo sapi	99.88
d1zmaa1	115	Bacterocin transport accessory protein Bta {Strept	99.87
d1woua_	119	Putative 42-9-9 protein (thioredoxin containing pr	99.86
d2fwha1	117	Thiol:disulfide interchange protein DsbD, C-termin	99.86
d1nhoa_	85	MTH807, thioredoxin/glutaredoxin-like protein {Arc	99.84
d1hyua4	96	Alkyl hydroperoxide reductase subunit F (AhpF), N-	99.84
d1a8ya1	124	Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax	99.83
d2b5ea1	140	Protein disulfide isomerase, PDI {Baker's yeast (S	99.83
d2trcp_	217	Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]}	99.83
d1z5ye1	136	Thioredoxin-like protein CcmG (CycY, DsbE) {Escher	99.83
d2b5xa1	143	thiol:disulfide oxidoreductase YkuV {Bacillus subt	99.81
d1knga_	144	Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyr	99.8
d2djja1	116	Protein disulfide isomerase, PDI {Fungi (Humicola	99.8
d1zzoa1	134	Lipoprotein DsbF {Mycobacterium tuberculosis [TaxI	99.8
d2cvba1	187	Probable thiol-disulfide isomerase/thioredoxin TTH	99.79
d1lu4a_	134	Soluble secreted antigen MPT53 {Mycobacterium tube	99.79
d2fy6a1	143	Peptide methionine sulfoxide reductase MsrA/MsrB,	99.79
d1st9a_	137	Thiol-disulfide oxidoreductase ResA {Bacillus subt	99.76
d2c0ga2	122	Windbeutel, N-terminal domain {Fruit fly (Drosophi	99.75
d1o73a_	144	Tryparedoxin I {Trypanosoma brucei brucei [TaxId:	99.72
d1jfua_	176	Membrane-anchored thioredoxin-like protein TlpA, s	99.7
d1i5ga_	144	Tryparedoxin II {Crithidia fasciculata [TaxId: 565	99.69
d1sena_	135	Thioredoxin-like protein p19, TLP19 {Human (Homo s	99.69
d2dlxa1	147	UBX domain-containing protein 7 {Human (Homo sapie	99.69
d1o8xa_	144	Tryparedoxin I {Crithidia fasciculata [TaxId: 5656	99.64
d1g7ea_	122	Endoplasmic reticulum protein ERP29, N-terminal do	99.63
d1wjka_	100	Thioredoxin-like structure containing protein C330	99.61
d1z6na1	166	Hypothetical protein PA1234 {Pseudomonas aeruginos	99.48
d2cx4a1	160	Bacterioferritin comigratory protein {Archaeon Aer	99.48
d2a4va1	156	Peroxiredoxin dot5 {Baker's yeast (Saccharomyces c	99.44
d2bmxa1	169	Alkyl hydroperoxide reductase AhpC {Mycobacterium	99.4
d1e2ya_	167	Tryparedoxin peroxidase (thioredoxin peroxidase ho	99.37
d1qxha_	164	Thiol peroxidase Tpx {Escherichia coli [TaxId: 562	99.32
d1we0a1	166	Alkyl hydroperoxide reductase AhpC {Amphibacillus	99.3
d1xvwa1	153	Putative peroxiredoxin Rv2238c/MT2298 {Mycobacteri	99.3
d1psqa_	163	Probable thiol peroxidase PsaD {Streptococcus pneu	99.28
d1uula_	194	Tryparedoxin peroxidase (thioredoxin peroxidase ho	99.24
d1eeja1	156	Disulfide bond isomerase, DsbC, C-terminal domain	99.24
d2f8aa1	184	Glutathione peroxidase {Human (Homo sapiens) [TaxI	99.15
d1zyea1	158	Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [	99.15
d1zofa1	170	Thioredoxin reductase TsaA {Helicobacter pylori [T	99.15
d2zcta1	237	Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]}	99.14
d1q98a_	164	Thiol peroxidase Tpx {Haemophilus influenzae [TaxI	99.14
d1beda_	181	Disulfide-bond formation facilitator (DsbA) {Vibri	99.14
d1xvqa_	166	Thiol peroxidase Tpx {Mycobacterium tuberculosis [	99.13
d1t3ba1	150	Disulfide bond isomerase, DsbC, C-terminal domain	99.12
d1xzoa1	172	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	99.11
d1n8ja_	186	Alkyl hydroperoxide reductase AhpC {Salmonella typ	99.11
d1wp0a1	160	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	99.04
d1v58a1	169	Thiol:disulfide interchange protein DsbG, C-termin	99.03
d1qmva_	197	Thioredoxin peroxidase 2 (thioredoxin peroxidase B	98.96
d1prxa_	220	1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId:	98.93
d1r7ha_	74	Glutaredoxin-like NRDH-redoxin {Corynebacterium am	98.9
d1z6ma1	172	Hypothetical protein EF0770 {Enterococcus faecalis	98.85
d2h01a1	170	Thioredoxin peroxidase 2 (thioredoxin peroxidase B	98.84
d1a8la1	119	Protein disulfide isomerase, PDI {Archaeon Pyrococ	98.81
d1fvka_	188	Disulfide-bond formation facilitator (DsbA) {Esche	98.8
d1h75a_	76	Glutaredoxin-like NRDH-redoxin {Escherichia coli [	98.76
d1egoa_	85	Glutaredoxin (Grx, thioltransferase) {Escherichia	98.73
d1iloa_	77	MTH985, a thioredoxin {Archaeon Methanobacterium t	98.69
d1ttza_	75	Hypothetical protein XCC2852 {Xanthomonas campestr	98.67
d2b7ka1	169	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	98.64
d1ktea_	105	Glutaredoxin (Grx, thioltransferase) {Pig (Sus scr	98.6
d1xcca_	219	1-Cys peroxiredoxin {Plasmodium yoelii yoelii [Tax	98.56
d1fova_	82	Glutaredoxin (Grx, thioltransferase) {Escherichia	98.44
d2djka1	133	Protein disulfide isomerase, PDI {Fungi (Humicola	98.36
d1nm3a1	74	C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus	98.35
d2b5ea3	125	Protein disulfide isomerase, PDI {Baker's yeast (S	98.2
d1wika_	109	Thioredoxin-like protein 2 {Mouse (Mus musculus) [	97.86
d1hd2a_	161	Peroxiredoxin 5 {Human (Homo sapiens) [TaxId: 9606	97.62
d1bjxa_	110	Protein disulfide isomerase, PDI {Human (Homo sapi	97.49
d2axoa1	225	Hypothetical protein Atu2684 {Agrobacterium tumefa	97.29
d1g7oa2	75	Glutaredoxin 2 {Escherichia coli [TaxId: 562]}	97.18
d1hyua3	102	Alkyl hydroperoxide reductase subunit F (AhpF), N-	96.99
d1un2a_	195	Disulfide-bond formation facilitator (DsbA) {Esche	96.97
d1a8ya2	102	Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax	96.94
d1nm3a2	163	N-terminal, Prx domain of Hybrid-Prx5 {Haemophilus	96.72
d1t1va_	93	SH3BGRL3 {Mouse (Mus musculus) [TaxId: 10090]}	96.59
d1tp9a1	162	Plant peroxiredoxin {Western balsam poplar(Populus	96.55
d1t4za_	105	Adaptive-response sensory-kinase SasA, N-terminal	95.79
d1abaa_	87	Glutaredoxin (Grx, thioltransferase) {Bacteriophag	95.24
d1r5pa_	90	Circadian oscillation regulator KaiB {Cyanobacteri	94.9
d1z9ha2	113	Microsomal prostaglandin E synthase-2 {Crab-eating	94.68
d1un2a_	195	Disulfide-bond formation facilitator (DsbA) {Esche	94.37
d1r4wa_	221	Mitochondrial class kappa glutathione S-transferas	94.05
d1a8ya3	119	Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax	92.75
d1eema2	98	Class omega GST {Human (Homo sapiens) [TaxId: 9606	92.6
d1s3aa1	85	NADH-ubiquinone oxidoreductase b8 subunit, CI-B8 {	91.8
d1k0da2	92	Yeast prion protein ure2p, nitrogen regulation fra	91.1
d1k0ma2	86	Chloride intracellular channel 1 (clic1) {Human (H	90.95
d1oyja2	84	Class tau GST {Rice (Oryza sativa) [TaxId: 4530]}	90.27
d1r5aa2	85	Class delta GST {Mosquito (Anopheles dirus b), iso	89.87
d1gwca2	83	Class tau GST {Aegilops tauschii, also known as Tr	88.65
d1aw9a2	81	Class phi GST {Maize (Zea mays), type III [TaxId:	88.22
d1v2aa2	83	Class delta GST {Mosquito (Anopheles dirus b), iso	87.91
d1z3ea1	114	Regulatory protein Spx {Bacillus subtilis [TaxId:	87.41
d1xg8a_	111	Hypothetical protein SA0798 {Staphylococcus aureus	86.78
d1e6ba2	80	Class zeta GST {Mouse-ear cress (Arabidopsis thali	85.81
d1ljra2	79	Class theta GST {Human (Homo sapiens) [TaxId: 9606	85.79
d1jlva2	84	Class delta GST {Mosquito (Anopheles dirus b), iso	84.13
d1rw1a_	114	Hypothetical protein PA3664 (YffB) {Pseudomonas ae	83.08

>d1xfla_ c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.97  E-value=2.3e-29  Score=152.25  Aligned_cols=111  Identities=44%  Similarity=0.932  Sum_probs=104.4

Q ss_pred             CCCceEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhhhhhCCCccee
Q 032502           22 AGGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATP  101 (139)
Q Consensus        22 ~~~~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P  101 (139)
                      ..+.+..+.+.++|+..+..+..+++++||+||++||++|+.+.|.++++++.++++.|+.+|.+++++++++|+|+++|
T Consensus         4 ~~~~vi~i~s~~~~~~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~vd~~~~~~l~~~~~V~~~P   83 (114)
T d1xfla_           4 EEGQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPNVLFLKVDTDELKSVASDWAIQAMP   83 (114)
T ss_dssp             CCSCCEEESSHHHHHHHHHHHHHTTCEEEEEEECTTCHHHHHHHHHHHHHHHHCSSEEEEEEETTTSHHHHHHTTCCSSS
T ss_pred             CCCcEEEEcCHHHHHHHHHHhhccCCeEEEEEEcCCCCCccccccchhhhcccccccceeEEEeeeceeeccccceeeeE
Confidence            34678889999999999988888899999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEeCCeEEEEEeCCChHHHHHHHHHHhh
Q 032502          102 TFFFLKDGQQVDKLVGANKPELQKKVAAAVD  132 (139)
Q Consensus       102 t~~~~~~g~~~~~~~g~~~~~l~~~i~~~~~  132 (139)
                      |+++|++|+.+.++.|.+.++|.++|.+.|+
T Consensus        84 t~~~~~~G~~v~~~~G~~~~~l~~~i~k~la  114 (114)
T d1xfla_          84 TFMFLKEGKILDKVVGAKKDELQSTIAKHLA  114 (114)
T ss_dssp             EEEEEETTEEEEEEESCCHHHHHHHHHHHCC
T ss_pred             EEEEEECCEEEEEEeCcCHHHHHHHHHHhhC
Confidence            9999999999999999999999999998763

>d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=99.97  E-value=3.1e-29  Score=151.25  Aligned_cols=110  Identities=42%  Similarity=0.827  Sum_probs=103.9

Q ss_pred             CCceEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCC-cEEEEEeCCcchhhhhhCCCccee
Q 032502           23 GGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVDELVEFSTSWDIKATP  101 (139)
Q Consensus        23 ~~~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~-v~~~~vd~~~~~~~~~~~~v~~~P  101 (139)
                      |+.+..+.+.++|++.+..+..++++++|+||++||++|+.+.|.++++++++++ +.|+.+|+++++.++++|+|.++|
T Consensus         1 gg~v~~i~t~~~fd~~l~~~~~~~k~vvv~f~a~wC~~C~~~~p~~~~l~~~~~~~v~~~~vd~d~~~~l~~~~~v~~~P   80 (112)
T d1ep7a_           1 GGSVIVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDAVAAVAEAAGITAMP   80 (112)
T ss_dssp             CCSEEEECSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTTHHHHHHHTCCBSS
T ss_pred             CCCEEEEeCHHHHHHHHHHHhhcCCeEEEEEEcCCcCCCcccchhhhhhhhcccceEEEEEeeccccccccccccccCCC
Confidence            6788999999999999988878899999999999999999999999999999985 999999999999999999999999


Q ss_pred             EEEEEeCCeEEEEEeCCChHHHHHHHHHHhh
Q 032502          102 TFFFLKDGQQVDKLVGANKPELQKKVAAAVD  132 (139)
Q Consensus       102 t~~~~~~g~~~~~~~g~~~~~l~~~i~~~~~  132 (139)
                      |+++|++|+.+.++.|.+.++|.++|+++.+
T Consensus        81 t~~~~~~G~~v~~~~G~~~~~l~~~i~k~~a  111 (112)
T d1ep7a_          81 TFHVYKDGVKADDLVGASQDKLKALVAKHAA  111 (112)
T ss_dssp             EEEEEETTEEEEEEESCCHHHHHHHHHHHHC
T ss_pred             EEEEEECCEEEEEEeCcCHHHHHHHHHHHhC
Confidence            9999999999999999999999999998753

>d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus tremula), thioredoxin H [TaxId: 113636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: European aspen (Populus tremula), thioredoxin H [TaxId: 113636]

Probab=99.96  E-value=1.4e-28  Score=148.52  Aligned_cols=109  Identities=45%  Similarity=0.885  Sum_probs=103.1

Q ss_pred             CCceEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhhhhhCCCcceeE
Q 032502           23 GGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPT  102 (139)
Q Consensus        23 ~~~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt  102 (139)
                      .+.+..+.+.+++++.+..+..+++++||+||++||++|+.+.|.+.++++.++++.|+.+|+++++.++++|+|.++||
T Consensus         3 ~g~vi~i~s~e~~~~~l~~~~~~~k~vvv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~I~~~Pt   82 (113)
T d1ti3a_           3 EGQVIACHTVDTWKEHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFPNVTFLKVDVDELKAVAEEWNVEAMPT   82 (113)
T ss_dssp             CCCEEEECSHHHHHHHHHHHTTSSSEEEEEEECSSCHHHHHHHHHHHHHHHHCSSEEEEEEETTTCHHHHHHHHCSSTTE
T ss_pred             CCcEEEEeCHHHHHHHHHHHHcCCCEEEEEEEcCccccchhhhhhhhhhhccCCCceEEeeeeeccccccccCeecccce
Confidence            46789999999999999888788999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCeEEEEEeCCChHHHHHHHHHHh
Q 032502          103 FFFLKDGQQVDKLVGANKPELQKKVAAAV  131 (139)
Q Consensus       103 ~~~~~~g~~~~~~~g~~~~~l~~~i~~~~  131 (139)
                      +++|++|+.+.++.|.+.++|.++|.++.
T Consensus        83 ~~~~k~G~~v~~~~G~~~~~l~~~i~k~a  111 (113)
T d1ti3a_          83 FIFLKDGKLVDKTVGADKDGLPTLVAKHA  111 (113)
T ss_dssp             EEEEETTEEEEEEECCCTTHHHHHHHHHH
T ss_pred             EEEEECCEEEEEEcCCCHHHHHHHHHHHh
Confidence            99999999999999998889999998874

>d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=3.2e-28  Score=145.22  Aligned_cols=104  Identities=43%  Similarity=0.855  Sum_probs=96.4

Q ss_pred             eEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhhhhhCCCcceeEEEE
Q 032502           26 VSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFF  105 (139)
Q Consensus        26 ~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~  105 (139)
                      +.++.+.++|++.+..+  .+++++|+||++||++|+.+.|.+.++++.++++.|+.+|++++++++++|+|.++||+++
T Consensus         2 v~~i~s~~~f~~~l~~~--~~k~vvv~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~vd~d~~~~~~~~~~V~~~Pt~~~   79 (105)
T d2ifqa1           2 VKQIESKTAFQEALDAA--GDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASECEVKCMPTFQF   79 (105)
T ss_dssp             CEEECSHHHHHHHHHHT--TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTCHHHHHHTTCCBSSEEEE
T ss_pred             eEEcCCHHHHHHHHHhC--CCCEEEEEEEcCCccchhhhhhhhhhhccccccceeeecccccCHhHHHHcCceEEEEEEE
Confidence            56788899999888643  4689999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCeEEEEEeCCChHHHHHHHHHHh
Q 032502          106 LKDGQQVDKLVGANKPELQKKVAAAV  131 (139)
Q Consensus       106 ~~~g~~~~~~~g~~~~~l~~~i~~~~  131 (139)
                      |++|+.+.++.|.+.++|.++|+++|
T Consensus        80 ~~~G~~v~~~~G~~~~~l~~~i~~~l  105 (105)
T d2ifqa1          80 FKKGQKVGEFSGANKEKLEATINELV  105 (105)
T ss_dssp             EETTEEEEEEESCCHHHHHHHHHHHC
T ss_pred             EECCEEEEEEeCCCHHHHHHHHHhhC
Confidence            99999999999998899999998875

>d1r26a_ c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.96  E-value=3.6e-28  Score=146.63  Aligned_cols=106  Identities=26%  Similarity=0.526  Sum_probs=99.0

Q ss_pred             CCceEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhhhhhCCCcceeE
Q 032502           23 GGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPT  102 (139)
Q Consensus        23 ~~~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt  102 (139)
                      ..++.++.+.++|++.+    .++++++|+||++||++|+.+.|.+.+++++++++.|+.+|++++++++++|+|.++||
T Consensus         7 ~p~vi~i~s~~~~~~~~----~~~~~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~~~l~~~~~V~~~Pt   82 (113)
T d1r26a_           7 YPSVVDVYSVEQFRNIM----SEDILTVAWFTAVWCGPCKTIERPMEKIAYEFPTVKFAKVDADNNSEIVSKCRVLQLPT   82 (113)
T ss_dssp             CSCCEEECCHHHHHHHH----HSSSCEEEEEECTTCHHHHHTHHHHHHHHHHCTTSEEEEEETTTCHHHHHHTTCCSSSE
T ss_pred             CCceEEeCCHHHHHHHH----cCCCeEEEEEECCCCccchhhceeccccccccccccccccccccchhhHHHccccCCCE
Confidence            34688999999999877    46789999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCeEEEEEeCCChHHHHHHHHHHhh
Q 032502          103 FFFLKDGQQVDKLVGANKPELQKKVAAAVD  132 (139)
Q Consensus       103 ~~~~~~g~~~~~~~g~~~~~l~~~i~~~~~  132 (139)
                      +++|++|+.+.++.|.+.+.+.+.|.+++.
T Consensus        83 ~~~~~~G~~v~~~~G~~~~~l~~~l~~~ik  112 (113)
T d1r26a_          83 FIIARSGKMLGHVIGANPGMLRQKLRDIIK  112 (113)
T ss_dssp             EEEEETTEEEEEEESSCHHHHHHHHHHHHH
T ss_pred             EEEEECCEEEEEEeCCCHHHHHHHHHHHhc
Confidence            999999999999999988999999998875

>d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=4.4e-28  Score=144.94  Aligned_cols=106  Identities=33%  Similarity=0.604  Sum_probs=98.3

Q ss_pred             ceEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhhhhhCCCcceeEEE
Q 032502           25 NVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFF  104 (139)
Q Consensus        25 ~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~  104 (139)
                      .+..+.+.++|++.+..+  ++++++|+||++||++|+.+.|.+++++++++++.|+.+|++++++++++|+|.++||++
T Consensus         2 ~v~~i~s~~~f~~~l~~~--~~klvvv~F~a~wC~~Ck~~~p~~~~la~~~~~~~f~~vd~d~~~~l~~~~~v~~~Pt~~   79 (107)
T d1gh2a_           2 GVKPVGSDPDFQPELSGA--GSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQCQGTAATNNISATPTFQ   79 (107)
T ss_dssp             CEEEECSGGGHHHHHHHT--TTSCEEEEEECSSCHHHHHHHHHHHHHHHHCTTSEEEEEETTTSHHHHHHTTCCSSSEEE
T ss_pred             ceEEcCCHHHHHHHHHhC--CCCEEEEEEECCCCCCccccchhhhccccccccccccccccccchhhhhhcCceeceEEE
Confidence            467788999999888643  478999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCeEEEEEeCCChHHHHHHHHHHhh
Q 032502          105 FLKDGQQVDKLVGANKPELQKKVAAAVD  132 (139)
Q Consensus       105 ~~~~g~~~~~~~g~~~~~l~~~i~~~~~  132 (139)
                      +|++|+.+.++.|.+.+.|.++|+++|.
T Consensus        80 ~~~~G~~v~~~~G~~~~~l~~~i~k~le  107 (107)
T d1gh2a_          80 FFRNKVRIDQYQGADAVGLEEKIKQHLE  107 (107)
T ss_dssp             EEETTEEEEEEESSCHHHHHHHHHHHHC
T ss_pred             EEECCEEEEEEeCCCHHHHHHHHHHhhC
Confidence            9999999999999999999999998863

>d1xwaa_ c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.95  E-value=2.8e-27  Score=142.39  Aligned_cols=106  Identities=40%  Similarity=0.746  Sum_probs=97.2

Q ss_pred             CCceEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCC-cEEEEEeCCcchhhhhhCCCccee
Q 032502           23 GGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVDELVEFSTSWDIKATP  101 (139)
Q Consensus        23 ~~~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~-v~~~~vd~~~~~~~~~~~~v~~~P  101 (139)
                      ...+.++.+.++++..+...  +++++||+||++||++|+.+.|.++++++++++ +.++.+|+++++.++++|+|.++|
T Consensus         4 ~~~v~~i~~~~~~~~~l~~~--~~k~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~i~~d~~~~l~~~~~V~~~P   81 (111)
T d1xwaa_           4 AAMVYQVKDKADLDGQLTKA--SGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDECEDIAMEYNISSMP   81 (111)
T ss_dssp             SCCEEECCSHHHHHHHHHHH--TTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCHHHHHHTTCCSSS
T ss_pred             CCeEEEECCHHHHHHHHHhc--CCCEEEEEEECCcccCccccchhHHHHhhhcccceEEEEEEeecCcchhhcCCCcccc
Confidence            45678899999999888644  589999999999999999999999999999986 899999999999999999999999


Q ss_pred             EEEEEeCCeEEEEEeCCChHHHHHHHHHH
Q 032502          102 TFFFLKDGQQVDKLVGANKPELQKKVAAA  130 (139)
Q Consensus       102 t~~~~~~g~~~~~~~g~~~~~l~~~i~~~  130 (139)
                      |+++|++|+.+.++.|.+.++|.++|++.
T Consensus        82 t~~~~~~G~~v~~~~G~~~~~l~~~I~~~  110 (111)
T d1xwaa_          82 TFVFLKNGVKVEEFAGANAKRLEDVIKAN  110 (111)
T ss_dssp             EEEEEETTEEEEEEESCCHHHHHHHHHHT
T ss_pred             EEEEEECCEEEEEEeCCCHHHHHHHHHhc
Confidence            99999999999999999888899888765

>d1syra_ c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=99.95  E-value=2.9e-27  Score=140.57  Aligned_cols=101  Identities=41%  Similarity=0.784  Sum_probs=92.9

Q ss_pred             eEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhhhhhCCCcceeEEEE
Q 032502           26 VSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFF  105 (139)
Q Consensus        26 ~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~  105 (139)
                      +..+.+.++|++.+.    ++++++|+||++||++|+.+.|.+++++++++++.|+.+|++++++++++|+|.++||+++
T Consensus         2 v~~i~s~~~f~~~i~----~~~~vvv~F~a~wC~~C~~~~~~~~~l~~~~~~~~~~~vd~d~~~~~~~~~~V~~~Pt~i~   77 (103)
T d1syra_           2 VKIVTSQAEFDSIIS----QNELVIVDFFAEWCGPCKRIAPFYEECSKTYTKMVFIKVDVDEVSEVTEKENITSMPTFKV   77 (103)
T ss_dssp             CEEECSHHHHHHHHH----HCSEEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTTHHHHHHTTCCSSSEEEE
T ss_pred             cEEeCCHHHHHHHHh----CCCcEEEEEeCCcccCcccccccchhhhhcccceEEEeeccccCcceeeeeeeecceEEEE
Confidence            466788889988773    5789999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCeEEEEEeCCChHHHHHHHHHH
Q 032502          106 LKDGQQVDKLVGANKPELQKKVAAA  130 (139)
Q Consensus       106 ~~~g~~~~~~~g~~~~~l~~~i~~~  130 (139)
                      |++|+.+.++.|.+.++|.++|+++
T Consensus        78 ~k~G~~v~~~~G~~~~~l~~~i~k~  102 (103)
T d1syra_          78 YKNGSSVDTLLGANDSALKQLIEKY  102 (103)
T ss_dssp             EETTEEEEEEESCCHHHHHHHHHTT
T ss_pred             EECCEEEEEEeCcCHHHHHHHHHhh
Confidence            9999999999999888888887754

>d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Anabaena sp., pcc 7120 [TaxId: 1167]

Probab=99.95  E-value=7e-27  Score=139.96  Aligned_cols=104  Identities=21%  Similarity=0.486  Sum_probs=93.5

Q ss_pred             ceEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCC-cEEEEEeCCcchhhhhhCCCcceeEE
Q 032502           25 NVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVDELVEFSTSWDIKATPTF  103 (139)
Q Consensus        25 ~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~-v~~~~vd~~~~~~~~~~~~v~~~Pt~  103 (139)
                      .+..+ +.++|++.+.   .++++++|+||++||++|+.+.|.+++++..+++ +.|+.+|+++++.++++|+|+++||+
T Consensus         3 ~V~~l-t~~~f~~~v~---~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~I~~~Pt~   78 (108)
T d1thxa_           3 GVITI-TDAEFESEVL---KAEQPVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEIDPNPTTVKKYKVEGVPAL   78 (108)
T ss_dssp             SEEEC-CGGGHHHHTT---TCSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTTTCEEEEEESTTCHHHHHHTTCCSSSEE
T ss_pred             CceEC-CHHHHHHHHH---hCCCcEEEEEECCCCCCccccchHHHHHHHhcCCcceeceecccccHHHHHHhcccCCCEE
Confidence            35666 4577877663   4578999999999999999999999999999985 99999999999999999999999999


Q ss_pred             EEEeCCeEEEEEeCC-ChHHHHHHHHHHhh
Q 032502          104 FFLKDGQQVDKLVGA-NKPELQKKVAAAVD  132 (139)
Q Consensus       104 ~~~~~g~~~~~~~g~-~~~~l~~~i~~~~~  132 (139)
                      +++++|+.+.++.|. +.++|.++|++.|.
T Consensus        79 ~~~~~g~~v~~~~G~~~~~~l~~~i~~~Ln  108 (108)
T d1thxa_          79 RLVKGEQILDSTEGVISKDKLLSFLDTHLN  108 (108)
T ss_dssp             EEEETTEEEEEEESCCCHHHHHHHHHHHHC
T ss_pred             EEEECCEEEEEEeCCCCHHHHHHHHHHhcC
Confidence            999999999999999 99999999998763

>d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]

Probab=99.95  E-value=2.3e-27  Score=141.39  Aligned_cols=97  Identities=33%  Similarity=0.658  Sum_probs=89.4

Q ss_pred             chhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCC-cEEEEEeCCcchhhhhhCCCcceeEEEEEeCC
Q 032502           31 TKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVDELVEFSTSWDIKATPTFFFLKDG  109 (139)
Q Consensus        31 ~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~-v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g  109 (139)
                      +.++|++.+    .++++++|+||++||++|+.+.|.+.+++..+++ +.|+.+|+++++.++++|+|.++||+++|++|
T Consensus         6 t~~~f~~~i----~~~k~vvv~F~a~wC~~C~~~~~~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~V~~~Pt~~~~~~G   81 (105)
T d1nw2a_           6 TDANFQQAI----QGDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETTSQFGIMSIPTLILFKGG   81 (105)
T ss_dssp             CTTTHHHHT----TSSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTCEEEEEETTTCHHHHHHTTCCBSSEEEEEETT
T ss_pred             CHHHHHHHH----hCCCcEEEEEECCCCCCcccccchhhhhhhhcCCceEEEEEECCCCcccHHHCCcceeeEEEEEECC
Confidence            556677665    5689999999999999999999999999999985 99999999999999999999999999999999


Q ss_pred             eEEEEEeCC-ChHHHHHHHHHHh
Q 032502          110 QQVDKLVGA-NKPELQKKVAAAV  131 (139)
Q Consensus       110 ~~~~~~~g~-~~~~l~~~i~~~~  131 (139)
                      +.+.++.|. +.++|.++|+++|
T Consensus        82 ~~~~~~~G~~~~~~l~~~i~~~L  104 (105)
T d1nw2a_          82 EPVKQLIGYQPKEQLEAQLADVL  104 (105)
T ss_dssp             EEEEEEESCCCHHHHHHHTTTTC
T ss_pred             EEEEEEECCCCHHHHHHHHHHHh
Confidence            999999999 8999999988776

>d1dbya_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=99.95  E-value=6.1e-27  Score=140.02  Aligned_cols=99  Identities=27%  Similarity=0.637  Sum_probs=91.0

Q ss_pred             chhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCC-CcEEEEEeCCcchhhhhhCCCcceeEEEEEeCC
Q 032502           31 TKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP-SLMFLLVDVDELVEFSTSWDIKATPTFFFLKDG  109 (139)
Q Consensus        31 ~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~-~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g  109 (139)
                      +.++|++.+.   .+++++||.||++||++|+.+.|.+.+++..+. ++.++.+|++.++.++++|+|.++||+++|++|
T Consensus         7 ~~~~f~~~v~---~s~kpvlv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~V~~~Pt~~~~~~G   83 (107)
T d1dbya_           7 NDDTFKNVVL---ESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDESPNVASEYGIRSIPTIMVFKGG   83 (107)
T ss_dssp             CHHHHHHHTT---TCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHHTCCSSCEEEEESSS
T ss_pred             cHHHHHHHHH---hCCCcEEEEEECCCCCCccccChHHHHHHHhhcccceEEEEecccchhHHHHhcccceEEEEEEECC
Confidence            5678887774   457899999999999999999999999999886 599999999999999999999999999999999


Q ss_pred             eEEEEEeCC-ChHHHHHHHHHHhh
Q 032502          110 QQVDKLVGA-NKPELQKKVAAAVD  132 (139)
Q Consensus       110 ~~~~~~~g~-~~~~l~~~i~~~~~  132 (139)
                      +.+.++.|. +.++|.++|+++|+
T Consensus        84 ~~v~~~~G~~~~~~l~~~i~~~L~  107 (107)
T d1dbya_          84 KKCETIIGAVPKATIVQTVEKYLN  107 (107)
T ss_dssp             SEEEEEESCCCHHHHHHHHHHHCC
T ss_pred             eEEEEEeCCCCHHHHHHHHHHhhC
Confidence            999999998 99999999999864

>d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Escherichia coli [TaxId: 562]

Probab=99.94  E-value=2e-26  Score=137.89  Aligned_cols=104  Identities=29%  Similarity=0.635  Sum_probs=92.5

Q ss_pred             ceEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCC-CcEEEEEeCCcchhhhhhCCCcceeEE
Q 032502           25 NVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP-SLMFLLVDVDELVEFSTSWDIKATPTF  103 (139)
Q Consensus        25 ~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~-~v~~~~vd~~~~~~~~~~~~v~~~Pt~  103 (139)
                      .+.++ +.++|++.+.   .++++++|+||++||++|+.+.|.+.+++..+. ++.++.+|+++++.++.+|+|.++||+
T Consensus         3 ~v~~l-t~~~f~~~v~---~~~~~v~v~F~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~vd~d~~~~l~~~~~v~~~PT~   78 (108)
T d2trxa_           3 KIIHL-TDDSFDTDVL---KADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTL   78 (108)
T ss_dssp             TEEEC-CTTTHHHHTT---TCSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCTTHHHHTTCCSSSEE
T ss_pred             CceEC-CHHHHHHHHH---hCCCcEEEEEECCCCCCccccCcHHHHHHHHhhcceeeeeccccchhhHHHHhCCCcEEEE
Confidence            45565 4577777663   458999999999999999999999999998876 599999999999999999999999999


Q ss_pred             EEEeCCeEEEEEeCC-ChHHHHHHHHHHhh
Q 032502          104 FFLKDGQQVDKLVGA-NKPELQKKVAAAVD  132 (139)
Q Consensus       104 ~~~~~g~~~~~~~g~-~~~~l~~~i~~~~~  132 (139)
                      ++|++|+++.++.|. +.+.|.++|++.|.
T Consensus        79 ~~~~~G~~v~~~~G~~~~~~l~~~i~~~Ls  108 (108)
T d2trxa_          79 LLFKNGEVAATKVGALSKGQLKEFLDANLA  108 (108)
T ss_dssp             EEEETTEEEEEEESCCCHHHHHHHHHHHHC
T ss_pred             EEEECCEEEEEEeCCCCHHHHHHHHHHhcC
Confidence            999999999999999 99999999998863

>d1fb6a_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]

Probab=99.94  E-value=1.4e-26  Score=137.72  Aligned_cols=98  Identities=29%  Similarity=0.694  Sum_probs=89.5

Q ss_pred             chhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCC-cEEEEEeCCcchhhhhhCCCcceeEEEEEeCC
Q 032502           31 TKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVDELVEFSTSWDIKATPTFFFLKDG  109 (139)
Q Consensus        31 ~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~-v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g  109 (139)
                      +.++|++.+.   .++++++|+||++||++|+.+.|.+.++.+.+.+ +.++.+|++++++++++|+|.++||+++|++|
T Consensus         5 ~d~~f~~~v~---~~~~~vlv~F~a~wC~~C~~~~~~~~~l~~~~~~~~~~~~v~~d~~~~l~~~~~V~~~Pt~~~~~~G   81 (104)
T d1fb6a_           5 NDSSWKEFVL---ESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPGIATQYNIRSIPTVLFFKNG   81 (104)
T ss_dssp             CTTTHHHHTT---TCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCSSSEEEEEETT
T ss_pred             chhhHHHHHH---cCCCcEEEEEEcCccCCccccCchhHHHHHhhcCccceeEEecccchhhhhhcceeeeeEEEEEEcC
Confidence            4566777663   4578999999999999999999999999999975 89999999999999999999999999999999


Q ss_pred             eEEEEEeCC-ChHHHHHHHHHHh
Q 032502          110 QQVDKLVGA-NKPELQKKVAAAV  131 (139)
Q Consensus       110 ~~~~~~~g~-~~~~l~~~i~~~~  131 (139)
                      +.+.++.|. +.+.|.++|+++|
T Consensus        82 ~~v~~~~G~~~~~~l~~~i~~~L  104 (104)
T d1fb6a_          82 ERKESIIGAVPKSTLTDSIEKYL  104 (104)
T ss_dssp             EEEEEEEECCCHHHHHHHHHHHC
T ss_pred             eEEEEEeCCCCHHHHHHHHHHhC
Confidence            999999999 9999999999875

>d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]

Probab=99.94  E-value=3.6e-26  Score=137.59  Aligned_cols=106  Identities=31%  Similarity=0.583  Sum_probs=93.0

Q ss_pred             CCceEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCc-chhhhhhCCCccee
Q 032502           23 GGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDE-LVEFSTSWDIKATP  101 (139)
Q Consensus        23 ~~~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~-~~~~~~~~~v~~~P  101 (139)
                      .+.+.++ +.++|.+.+..+  .+++++|+||++||++|+.+.|.+++++++++++.|+.+|+++ +++++++|+|.++|
T Consensus         5 ~g~v~~~-~~d~f~~~l~~~--~~k~vvv~f~a~wC~~C~~~~p~~~~l~~~~~~v~~~~vd~~~~~~~l~~~~~V~~~P   81 (112)
T d1f9ma_           5 VGKVTEV-NKDTFWPIVKAA--GDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLDVIFLKLDCNQENKTLAKELGIRVVP   81 (112)
T ss_dssp             TTSEEEE-CTTTHHHHHHTC--TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEECSSTTHHHHHHHCCSSSS
T ss_pred             ceeeEEe-CHHHHHHHHHHc--CCCEEEEEEEcCCCcchHHHHHHHhhhccccccceeecccccccchhhHhheeeccCC
Confidence            3456666 566787777532  4689999999999999999999999999999999999999975 78999999999999


Q ss_pred             EEEEEeCCeEEEEEeCCChHHHHHHHHHHh
Q 032502          102 TFFFLKDGQQVDKLVGANKPELQKKVAAAV  131 (139)
Q Consensus       102 t~~~~~~g~~~~~~~g~~~~~l~~~i~~~~  131 (139)
                      |+++|++|+.+.++.|.+.+++.++|+++.
T Consensus        82 t~~~~k~G~~v~~~~G~~~~~l~e~i~~~~  111 (112)
T d1f9ma_          82 TFKILKENSVVGEVTGAKYDKLLEAIQAAR  111 (112)
T ss_dssp             EEEEEETTEEEEEEESSCHHHHHHHHHHHH
T ss_pred             EEEEEECCEEEEEEeCCCHHHHHHHHHHcc
Confidence            999999999999999998889999988764

>d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: spliceosomal protein U5-15Kd
domain: spliceosomal protein U5-15Kd
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=6.8e-25  Score=135.97  Aligned_cols=107  Identities=18%  Similarity=0.347  Sum_probs=92.3

Q ss_pred             ceEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCC-cEEEEEeCCcchhhhhhCCCcceeEE
Q 032502           25 NVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVDELVEFSTSWDIKATPTF  103 (139)
Q Consensus        25 ~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~-v~~~~vd~~~~~~~~~~~~v~~~Pt~  103 (139)
                      .++.+.+..++++.+..  .++++|||+||++||++|+.+.|.+.++++++++ +.|+.||++++++++++|+|.++||+
T Consensus         3 ~l~~l~s~~~~dq~i~~--~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~VDvd~~~~la~~~~I~~~PT~   80 (137)
T d1qgva_           3 MLPHLHNGWQVDQAILS--EEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEVPDFNKMYELYDPCTV   80 (137)
T ss_dssp             SSCBCCSHHHHHHHHHT--CSSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTCCTTTTSSCSCSSCEE
T ss_pred             cccccCCHHHHHHHHHh--CCCCEEEEEEECCCCccchhcChHHHHHHHHhhccceEEEeeccccchhhhhcCeeeEEEE
Confidence            35677888999988863  3578999999999999999999999999999986 89999999999999999999999999


Q ss_pred             EEEeCCeEEEEEeCC-----------ChHHHHHHHHHHhhc
Q 032502          104 FFLKDGQQVDKLVGA-----------NKPELQKKVAAAVDS  133 (139)
Q Consensus       104 ~~~~~g~~~~~~~g~-----------~~~~l~~~i~~~~~~  133 (139)
                      ++|++|+.+....|.           +.+++.+.++.+...
T Consensus        81 ~~f~~g~~i~~~~g~~~~~k~~~~l~~~~~~i~~ie~i~~~  121 (137)
T d1qgva_          81 MFFFRNKHIMIDLGTGNNNKINWAMEDKQEMVDIIETVYRG  121 (137)
T ss_dssp             EEEETTEEEEEECC------CCSCCSCHHHHHHHHHHHHHH
T ss_pred             EEEeCCcEEEEEecCCCcceeeeehhhhHHHHHHHHHHHHH
Confidence            999999998655442           567788888877544

>d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Escherichia coli [TaxId: 562]

Probab=99.90  E-value=5.8e-24  Score=131.00  Aligned_cols=104  Identities=13%  Similarity=0.186  Sum_probs=92.5

Q ss_pred             chhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCC--cEEEEEeCCcchhhhhhCCCcceeEEEEEeC
Q 032502           31 TKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS--LMFLLVDVDELVEFSTSWDIKATPTFFFLKD  108 (139)
Q Consensus        31 ~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~--v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~  108 (139)
                      +.++++..+..  ..+++|++.||++||++|+.+.|.|.++++++++  +.++.||++++++++++|+|.++||+++|++
T Consensus        23 ~~~~~d~~~~~--~~~~vVll~f~a~wCp~C~~~~pvl~ela~~~~~~~~~~a~Vd~d~~~~la~~~~V~~~PT~~~~~~  100 (132)
T d2hfda1          23 SESRLDDWLTQ--APDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEAIGDRFGVFRFPATLVFTG  100 (132)
T ss_dssp             CHHHHHHHHHH--CSEEEEEECSCCSCCSSSSCCTHHHHHHHTTCTTSCEEEEEECHHHHHHHHHHHTCCSCCEEEEEET
T ss_pred             ccccHHHHHHh--CCCcEEEEEeeCCCChhHHHHHHHHHHHHHHccCCcceeEEEEecCCHHHHHhhccCcceeEEEEEc
Confidence            56777766642  3457889999999999999999999999999986  5778999999999999999999999999999


Q ss_pred             CeEEEEEeCC-ChHHHHHHHHHHhhccCC
Q 032502          109 GQQVDKLVGA-NKPELQKKVAAAVDSVVP  136 (139)
Q Consensus       109 g~~~~~~~g~-~~~~l~~~i~~~~~~~~~  136 (139)
                      |+.+.++.|. +.++|..+|+.++...+.
T Consensus       101 G~~v~~~~G~~~~~~l~~~i~~ll~~~~e  129 (132)
T d2hfda1         101 GNYRGVLNGIHPWAELINLMRGLVEPQQE  129 (132)
T ss_dssp             TEEEEEECCCSCHHHHHHHHHHHHSCSSC
T ss_pred             CcEeeeecCCCCHHHHHHHHHHHhCcccc
Confidence            9999999998 999999999999876543

>d1a8la2 c.47.1.2 (A:120-226) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.90  E-value=7.9e-23  Score=121.84  Aligned_cols=87  Identities=16%  Similarity=0.289  Sum_probs=77.4

Q ss_pred             CCEEEEEEeCCCChhhhhhhHhHHHHHHh----CC-CcEEEEEeCCcchhhhhhCCCcceeEEEEEeCCeEEEEEeCC-C
Q 032502           46 GKIVIANFSATWCGPCRMIAPFFSELSEK----YP-SLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGA-N  119 (139)
Q Consensus        46 ~k~vlv~f~~~~C~~C~~~~~~l~~~~~~----~~-~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~  119 (139)
                      ++.+|+.||++||++|+.+.|.+.+++..    +. .+.+..+|.+++++++++|+|.++||++++++|+.+.++.|. +
T Consensus        15 ~~v~i~~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~v~~~~id~~~~~~l~~~~~V~~vPTi~i~~~G~~~~~~~G~~~   94 (107)
T d1a8la2          15 QDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEYPEWADQYNVMAVPKIVIQVNGEDRVEFEGAYP   94 (107)
T ss_dssp             SCEEEEEEECSSCTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEEGGGCHHHHHHTTCCSSCEEEEEETTEEEEEEESCCC
T ss_pred             CCeEEEEEEcCccccchhhChhHHhhhhhhhhccCCcEEEEEeccccccccccccccccceEEEEEeCCeEEEEEECCCC
Confidence            44556679999999999999999998654    22 489999999999999999999999999999999999999999 9


Q ss_pred             hHHHHHHHHHHhh
Q 032502          120 KPELQKKVAAAVD  132 (139)
Q Consensus       120 ~~~l~~~i~~~~~  132 (139)
                      .++|.++|.++|+
T Consensus        95 ~~~~~~~i~~al~  107 (107)
T d1a8la2          95 EKMFLEKLLSALS  107 (107)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhhC
Confidence            9999999998763

>d2b5ea4 c.47.1.2 (A:23-141) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.90  E-value=6.5e-23  Score=124.44  Aligned_cols=102  Identities=19%  Similarity=0.420  Sum_probs=87.7

Q ss_pred             ceEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCC--CcEEEEEeCCcchhhhhhCCCcceeE
Q 032502           25 NVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP--SLMFLLVDVDELVEFSTSWDIKATPT  102 (139)
Q Consensus        25 ~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~~~~~~~~~~v~~~Pt  102 (139)
                      .+..+ +.++|++.+    .+++.++|.||++||++|+.+.|.+.++++.+.  ++.|+.||++++.+++.+|+|.++||
T Consensus        11 ~v~~l-t~~~f~~~i----~~~~~~lV~fya~wC~~C~~~~~~~~~la~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt   85 (119)
T d2b5ea4          11 AVVKL-ATDSFNEYI----QSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKNITLAQIDCTENQDLCMEHNIPGFPS   85 (119)
T ss_dssp             SCEEC-CTTTHHHHH----TTCSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTTCEEEEEETTTCHHHHHHTTCCSSSE
T ss_pred             ccEEc-CHHHHHHHH----hcCCeEEEEEECCccCcccccchhhhhhhhhhcccceeeeeeeccchHHHHHHhccccCCe
Confidence            45554 667788766    467899999999999999999999999999885  49999999999999999999999999


Q ss_pred             EEEEeCCeEEEE--EeCC-ChHHHHHHHHHHh
Q 032502          103 FFFLKDGQQVDK--LVGA-NKPELQKKVAAAV  131 (139)
Q Consensus       103 ~~~~~~g~~~~~--~~g~-~~~~l~~~i~~~~  131 (139)
                      +++|++|+....  +.|. +.++|.+||.+..
T Consensus        86 i~~f~~g~~~~~~~y~g~~~~~~l~~fi~k~~  117 (119)
T d2b5ea4          86 LKIFKNSDVNNSIDYEGPRTAEAIVQFMIKQS  117 (119)
T ss_dssp             EEEEETTCTTCEEECCSCCSHHHHHHHHHHHT
T ss_pred             EEEEECCEEeeeEEecCCCCHHHHHHHHHHhh
Confidence            999998876544  4566 8999999998864

>d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.89  E-value=8.7e-24  Score=128.18  Aligned_cols=100  Identities=14%  Similarity=0.235  Sum_probs=76.9

Q ss_pred             chhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCC--cEEEEEeCCcchhhhhhCCCcceeEEEEEeC
Q 032502           31 TKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS--LMFLLVDVDELVEFSTSWDIKATPTFFFLKD  108 (139)
Q Consensus        31 ~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~--v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~  108 (139)
                      +..+++..+..  ..++++++.||++||++|+.+.|.|.+++++|++  +.++.+|++++++++++|+|.++||+++|++
T Consensus        17 ~~~~ld~~~~~--~~~~~vll~f~a~wCp~C~~~~pvl~eL~~~~~~~~~~~~~Vd~d~~~~l~~~~~V~~~Pt~~~~~~   94 (119)
T d2es7a1          17 EASTVDDWIKR--VGDGVILLSSDPRRTPEVSDNPVMIAELLREFPQFDWQVAVADLEQSEAIGDRFNVRRFPATLVFTD   94 (119)
T ss_dssp             CCC----------CCSEEEEECCCSCC----CCHHHHHHHHHHTCTTSCCEEEEECHHHHHHHHHTTTCCSSSEEEEESC
T ss_pred             cccCHHHHHHh--CCCcEEEEeecCCCCccHHHHHHHHHHHHHhcCCCceEEEEEECCCCHHHHHhcCcCcceEEEEEEc
Confidence            55556655542  3467899999999999999999999999999986  7888999999999999999999999999999


Q ss_pred             CeEEEEEeCC-ChHHHHHHHHHHhh
Q 032502          109 GQQVDKLVGA-NKPELQKKVAAAVD  132 (139)
Q Consensus       109 g~~~~~~~g~-~~~~l~~~i~~~~~  132 (139)
                      |+.+.++.|. +.+++.++|..+++
T Consensus        95 G~~v~~~~G~~~~~~l~~~i~~lLd  119 (119)
T d2es7a1          95 GKLRGALSGIHPWAELLTLMRSIVD  119 (119)
T ss_dssp             C----CEESCCCHHHHHHHHHHHHC
T ss_pred             CeEEEEeeCCCCHHHHHHHHHHHhC
Confidence            9999999999 99999999998874

>d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MJ0307, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.88  E-value=2.9e-23  Score=118.91  Aligned_cols=82  Identities=22%  Similarity=0.381  Sum_probs=74.2

Q ss_pred             CCEEEEEEeCCCChhhhhhhHhHHHHHHhCCC-cEEEEEeCCcchhhhhhCCCcceeEEEEEeCCeEEEEEeCC-ChHHH
Q 032502           46 GKIVIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGA-NKPEL  123 (139)
Q Consensus        46 ~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~-v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~l  123 (139)
                      +|+.|++||++||++|+.+.|.+.++++.+++ +.++.+|.+++++++++|+|.++||++++++|+    +.|. +.++|
T Consensus         2 ~kv~v~~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~d~~~~la~~~~V~~~Pt~~i~~~g~----~~G~~~~~~l   77 (85)
T d1fo5a_           2 SKVKIELFTSPMCPHCPAAKRVVEEVANEMPDAVEVEYINVMENPQKAMEYGIMAVPTIVINGDVE----FIGAPTKEAL   77 (85)
T ss_dssp             CCEEEEEEECCCSSCCCTHHHHHHHHHHHCSSSEEEEEEESSSSCCTTTSTTTCCSSEEEETTEEE----CCSSSSSHHH
T ss_pred             CceEEEEEECCCCcChHhhhhhccccccccccccccccccccccccccccCCceEeeEEEEECCcE----EECCCCHHHH
Confidence            57889999999999999999999999999975 889999999999999999999999999888765    4577 89999


Q ss_pred             HHHHHHHh
Q 032502          124 QKKVAAAV  131 (139)
Q Consensus       124 ~~~i~~~~  131 (139)
                      .++|++.|
T Consensus        78 ~~~i~~~L   85 (85)
T d1fo5a_          78 VEAIKKRL   85 (85)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHhcC
Confidence            99998864

>d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=4.3e-23  Score=125.37  Aligned_cols=103  Identities=18%  Similarity=0.474  Sum_probs=87.4

Q ss_pred             eEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCC----CcEEEEEeCCcchhhhhhCCCccee
Q 032502           26 VSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP----SLMFLLVDVDELVEFSTSWDIKATP  101 (139)
Q Consensus        26 ~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~----~v~~~~vd~~~~~~~~~~~~v~~~P  101 (139)
                      |..+ +.++|++.+    .+++++||.||++||++|+.+.|.+.++.+.+.    .+.++.+|++.+..++.+|+|.++|
T Consensus         9 V~~l-~~~~f~~~l----~~~k~vlV~Fya~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P   83 (120)
T d1meka_           9 VLVL-RKSNFAEAL----AAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEESDLAQQYGVRGYP   83 (120)
T ss_dssp             EEEC-CTTTHHHHH----HHCSEEEEEEECSSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETTTCCSSHHHHTCCSSS
T ss_pred             eEEc-CHHHHHHHH----hcCCcEEEEEECCCcCCccccchhhhhhcccccccccceeeeccccccchhHHHHhCCccCC
Confidence            4443 567888766    357899999999999999999999999998874    3899999999999999999999999


Q ss_pred             EEEEEeCCeEE--EEEeCC-ChHHHHHHHHHHhhc
Q 032502          102 TFFFLKDGQQV--DKLVGA-NKPELQKKVAAAVDS  133 (139)
Q Consensus       102 t~~~~~~g~~~--~~~~g~-~~~~l~~~i~~~~~~  133 (139)
                      |+++|++|+.+  ..+.|. +.+.|.++|++.++-
T Consensus        84 t~~~~~~G~~~~~~~~~g~~~~~~l~~fi~~~~~p  118 (120)
T d1meka_          84 TIKFFRNGDTASPKEYTAGREADDIVNWLKKRTGP  118 (120)
T ss_dssp             EEEEEESSCSSSCEECCCCSSHHHHHHHHHTTSCC
T ss_pred             eEEEEECCeEeeeEEecCCCCHHHHHHHHHHhhCC
Confidence            99999988654  355677 899999999887653

>d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein Bta {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Bacterocin transport accessory protein Bta
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.87  E-value=8.6e-22  Score=118.75  Aligned_cols=96  Identities=18%  Similarity=0.251  Sum_probs=78.4

Q ss_pred             eechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCC-cEEEEEeCCcc----hhhhhhCCCcceeEE
Q 032502           29 VTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVDEL----VEFSTSWDIKATPTF  103 (139)
Q Consensus        29 i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~-v~~~~vd~~~~----~~~~~~~~v~~~Pt~  103 (139)
                      +.+.+.+.+.+    .++++++|+||++||++|+.+.|.+.+++.+++. +.++.++...+    ..++++|+|.++||+
T Consensus        13 ~~t~~~~~~~i----~~~~~~~v~f~~~~C~~C~~~~p~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~V~~~PTl   88 (115)
T d1zmaa1          13 VTTVVRAQEAL----DKKETATFFIGRKTCPYCRKFAGTLSGVVAETKAHIYFINSEEPSQLNDLQAFRSRYGIPTVPGF   88 (115)
T ss_dssp             ECCHHHHHHHH----HTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHCCCCEEEETTCGGGHHHHHHHHHHHTCCSSCEE
T ss_pred             eCCHHHHHHHH----hcCCCEEEEEcCCCCccHHHHHHHHHHHHHHhhhhhhhheeecccccccccccccccccccccEE
Confidence            34556666555    5688999999999999999999999999988853 55554443322    467889999999999


Q ss_pred             EEEeCCeEEEEEeCC-ChHHHHHHHH
Q 032502          104 FFLKDGQQVDKLVGA-NKPELQKKVA  128 (139)
Q Consensus       104 ~~~~~g~~~~~~~g~-~~~~l~~~i~  128 (139)
                      +++++|++..++.|. +.++|.++|.
T Consensus        89 i~~~~gk~~~~~~G~~~~~el~~fla  114 (115)
T d1zmaa1          89 VHITDGQINVRCDSSMSAQEIKDFAG  114 (115)
T ss_dssp             EEEETTEEEEECCTTCCHHHHHHHHT
T ss_pred             EEEECCEEEEEEcCCCCHHHHHHHHc
Confidence            999999999999999 9999998873

>d1woua_ c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxin containing protein Txnl5) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Txnl5-like
domain: Putative 42-9-9 protein (thioredoxin containing protein Txnl5)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=8e-22  Score=119.46  Aligned_cols=100  Identities=17%  Similarity=0.326  Sum_probs=80.7

Q ss_pred             EEeechhHHHHHHHHHhhCCCEEEEEEeCC-------CChhhhhhhHhHHHHHHhCCC-cEEEEEeCC-------cchhh
Q 032502           27 SLVTTKDIWDQKMSEASKEGKIVIANFSAT-------WCGPCRMIAPFFSELSEKYPS-LMFLLVDVD-------ELVEF   91 (139)
Q Consensus        27 ~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~-------~C~~C~~~~~~l~~~~~~~~~-v~~~~vd~~-------~~~~~   91 (139)
                      ..+.+.++|.+.+..  .++++++|+|||+       ||++|+.+.|.+.++++.+++ +.|+.||++       .+..+
T Consensus         4 i~v~~~~e~~~~l~~--~~gk~v~v~F~a~~~~~g~sWC~pCk~~~P~~~~l~~~~~~~~~~~~vdv~~~~~~~d~~~~l   81 (119)
T d1woua_           4 VSVSGFEEFHRAVEQ--HNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISEGCVFIYCQVGEKPYWKDPNNDF   81 (119)
T ss_dssp             EEEESHHHHHHHHHT--TTTSEEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCCTTEEEEEEECCCHHHHHCTTCHH
T ss_pred             EEeCCHHHHHHHHHH--cCCCEEEEEEEecCCCCCCCCChhHHHHHHHHHHHHHhcCCceEEEEEECCCCcccchhhhhH
Confidence            356788888888853  3678999999995       999999999999999999885 999999985       45568


Q ss_pred             hhhCCCcceeEEEEEeCCeEEEEEeCCChHHHHHHHH
Q 032502           92 STSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKVA  128 (139)
Q Consensus        92 ~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~l~~~i~  128 (139)
                      +.+|+|.++||+++|++|+.+....+.+.+.+..+++
T Consensus        82 ~~~~~V~~iPT~i~~~~g~~l~~~~~~~~~ll~~~~~  118 (119)
T d1woua_          82 RKNLKVTAVPTLLKYGTPQKLVESECLQANLVEMLFS  118 (119)
T ss_dssp             HHHHCCCSSSEEEETTSSCEEEGGGGGCHHHHHHHHH
T ss_pred             HHhCCeEEEEEEEEEECCeEEeeeecCCHHHHHHHhc
Confidence            8899999999999998887665443446665555554

>d2fwha1 c.47.1.1 (A:428-544) Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma)
species: Escherichia coli [TaxId: 562]

Probab=99.86  E-value=2.7e-21  Score=116.81  Aligned_cols=103  Identities=20%  Similarity=0.444  Sum_probs=84.7

Q ss_pred             ceEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhH---HHHHHhCCCcEEEEEeCC----cchhhhhhCCC
Q 032502           25 NVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFF---SELSEKYPSLMFLLVDVD----ELVEFSTSWDI   97 (139)
Q Consensus        25 ~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l---~~~~~~~~~v~~~~vd~~----~~~~~~~~~~v   97 (139)
                      +...+.+.++++..+..  .++|++||.||++||++|+.+.|.+   .++.+.+.++.++.++.+    .+.+++++|+|
T Consensus         3 ~f~~i~~~~~~~~~l~~--~~gK~vlv~F~a~wC~~C~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v   80 (117)
T d2fwha1           3 NFTQIKTVDELNQALVE--AKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALADTVLLQANVTANDAQDVALLKHLNV   80 (117)
T ss_dssp             CCEECCSHHHHHHHHHH--HTTSCEEEEEECTTCHHHHHHHHHTTTSHHHHHHTTTSEEEEEECTTCCHHHHHHHHHTTC
T ss_pred             CceEecCHHHHHHHHHH--cCCCeEEEEEecccCCcccccchhHHhHHHHHHhccceEEEecccccchhHHHHHHhhheh
Confidence            45677888888877653  4689999999999999999999987   677777778888888775    35578999999


Q ss_pred             cceeEEEEE-eCCeEEE--EEeCC-ChHHHHHHHHH
Q 032502           98 KATPTFFFL-KDGQQVD--KLVGA-NKPELQKKVAA  129 (139)
Q Consensus        98 ~~~Pt~~~~-~~g~~~~--~~~g~-~~~~l~~~i~~  129 (139)
                      .++||++++ ++|+++.  ++.|. +.++|.++|.+
T Consensus        81 ~~~Pt~~~~~~~G~~~~~~~~~G~~~~~~~~~~l~~  116 (117)
T d2fwha1          81 LGLPTILFFDGQGQEHPQARVTGFMDAETFSAHLRD  116 (117)
T ss_dssp             CSSSEEEEECTTSCBCGGGCBCSCCCHHHHHHHHHH
T ss_pred             hhceEEEEEeCCCcEEecccccccCCHHHHHHHHhc
Confidence            999999999 7898764  56787 99999888864

>d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH807, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.84  E-value=1.5e-21  Score=111.68  Aligned_cols=80  Identities=20%  Similarity=0.336  Sum_probs=70.4

Q ss_pred             EEEEEeCCCChhhhhhhHhHHHHHHhCCC-cEEEEEeCCcchhhhhhCCCcceeEEEEEeCCeEEEEEeCC-ChHHHHHH
Q 032502           49 VIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGA-NKPELQKK  126 (139)
Q Consensus        49 vlv~f~~~~C~~C~~~~~~l~~~~~~~~~-v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~  126 (139)
                      .|..||++||++|+.+.|.++++++++++ +.++.+|++++++++++|+|.++||++++  |+.  ++.|. +.++|.++
T Consensus         4 ~v~~F~a~wC~~C~~~~p~~~~l~~~~~~~v~~~~vd~d~~~~l~~~~~V~~~Pt~~~~--~~~--~~~G~~~~~~l~~~   79 (85)
T d1nhoa_           4 NIEVFTSPTCPYCPMAIEVVDEAKKEFGDKIDVEKIDIMVDREKAIEYGLMAVPAIAIN--GVV--RFVGAPSREELFEA   79 (85)
T ss_dssp             CEEEESCSSSCCSTTHHHHHHHHHHHHCSSCCEEEECTTTCGGGGGGTCSSCSSEEEET--TTE--EEECSSCCHHHHHH
T ss_pred             EEEEEECCCCcchHHHHHHHhhhcccccccccccccccccchhhHHhcCceEeCEEEEC--CcE--EEEcCCCHHHHHHH
Confidence            35669999999999999999999999875 99999999999999999999999998874  443  45688 99999999


Q ss_pred             HHHHhh
Q 032502          127 VAAAVD  132 (139)
Q Consensus       127 i~~~~~  132 (139)
                      |++.++
T Consensus        80 i~~~l~   85 (85)
T d1nhoa_          80 INDEME   85 (85)
T ss_dssp             HHHHCC
T ss_pred             HHHhhC
Confidence            998763

>d1hyua4 c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.84  E-value=1.3e-20  Score=109.94  Aligned_cols=80  Identities=16%  Similarity=0.333  Sum_probs=71.9

Q ss_pred             CCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhhhhhCCCcceeEEEEEeCCeEEEEEeCC-ChHHH
Q 032502           45 EGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGA-NKPEL  123 (139)
Q Consensus        45 ~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~l  123 (139)
                      .+...++.|+++||++|+.+.|.+++++..++++.+..+|++++++++.+|+|+++||+++  ||+.+.  .|. +.++|
T Consensus        14 ~~~~~i~~F~s~~C~~C~~~~p~~~~~a~~~~~i~~~~vd~~~~~~l~~~~~I~~vPt~~~--ng~~~~--~G~~~~~~l   89 (96)
T d1hyua4          14 DGDFEFETYYSLSCHNCPDVVQALNLMAVLNPRIKHTAIDGGTFQNEITERNVMGVPAVFV--NGKEFG--QGRMTLTEI   89 (96)
T ss_dssp             CSCEEEEEEECTTCSSHHHHHHHHHHHHHHCTTEEEEEEETTTCHHHHHHTTCCSSSEEEE--TTEEEE--ESCCCHHHH
T ss_pred             CCCeEEEEEECCCCcchHHHHHHHHHHHHhCCceEEEEEecccchHHHhhcccccccEEEE--CCEEEE--ecCCCHHHH
Confidence            4667888899999999999999999999999999999999999999999999999999865  888764  587 88888


Q ss_pred             HHHHH
Q 032502          124 QKKVA  128 (139)
Q Consensus       124 ~~~i~  128 (139)
                      .++|+
T Consensus        90 ~~~le   94 (96)
T d1hyua4          90 VAKVD   94 (96)
T ss_dssp             HHHHC
T ss_pred             HHHHh
Confidence            88764

>d1a8ya1 c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.83  E-value=3.8e-20  Score=112.81  Aligned_cols=103  Identities=10%  Similarity=0.148  Sum_probs=83.8

Q ss_pred             ceEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChh------hhhhhHhHHHHHHhCC--CcEEEEEeCCcchhhhhhCC
Q 032502           25 NVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGP------CRMIAPFFSELSEKYP--SLMFLLVDVDELVEFSTSWD   96 (139)
Q Consensus        25 ~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~------C~~~~~~l~~~~~~~~--~v~~~~vd~~~~~~~~~~~~   96 (139)
                      .+..+ +.++|++.+.    +++.++|.||+|||++      |..+.+.++.+++.+.  ++.|+.||++++..++++|+
T Consensus        12 ~V~~L-~~~nf~~~l~----~~~~~~V~FyapwC~~~~~~~~~~~~~~~~~~~a~~~~~~~v~~a~Vd~~~~~~l~~~~~   86 (124)
T d1a8ya1          12 RVINV-NAKNYKNVFK----KYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKGVGFGLVDSEKDAAVAKKLG   86 (124)
T ss_dssp             CCEEC-CTTTHHHHHH----HCSEEEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEETTTSHHHHHTTT
T ss_pred             ccEEC-CHHHHHHHHH----hCCeEEEEEECCCccchhhhhHHHHHHHHHHHHHHHhccCCeEEEEEEeecccchhhccc
Confidence            35554 5777888773    5678999999999986      4455566666666553  49999999999999999999


Q ss_pred             CcceeEEEEEeCCeEEEEEeCC-ChHHHHHHHHHHhhc
Q 032502           97 IKATPTFFFLKDGQQVDKLVGA-NKPELQKKVAAAVDS  133 (139)
Q Consensus        97 v~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~i~~~~~~  133 (139)
                      |.++||+++|++|+.+. +.|. +.+.|.+||.+++..
T Consensus        87 I~~yPTi~~f~~g~~~~-y~G~r~~~~l~~fi~~~l~~  123 (124)
T d1a8ya1          87 LTEEDSIYVFKEDEVIE-YDGEFSADTLVEFLLDVLED  123 (124)
T ss_dssp             CCSTTCEEEEESSSEEE-CCSCCSHHHHHHHHHHHHSC
T ss_pred             cccCCcEEEeccCccEE-eeCCCCHHHHHHHHHHhcCC
Confidence            99999999999998874 6677 999999999998753

>d2b5ea1 c.47.1.2 (A:365-504) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.83  E-value=5.2e-21  Score=118.99  Aligned_cols=102  Identities=21%  Similarity=0.380  Sum_probs=81.6

Q ss_pred             ceEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCC----cEEEEEeCCcchhhhhhCCCcce
Q 032502           25 NVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS----LMFLLVDVDELVEFSTSWDIKAT  100 (139)
Q Consensus        25 ~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~----v~~~~vd~~~~~~~~~~~~v~~~  100 (139)
                      .|..+ +.++|++.+.   ..+++++|+||++||++|+.+.|.+.++++.+.+    +.++.+|.  +..++.+|+|.++
T Consensus        13 ~V~~l-~~~nf~~~v~---~~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~~~~~v~~~~~d~--~~~~~~~~~v~~~   86 (140)
T d2b5ea1          13 SVFQL-VGKNHDEIVN---DPKKDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKLDH--TENDVRGVVIEGY   86 (140)
T ss_dssp             SEEEE-CTTTHHHHHH---CTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHHHHCSSCEEEEEEG--GGCCCSSCCCSSS
T ss_pred             CcEEe-cCcCHHHHHh---cCCCCEEEEEEeccCcccchhHHHHHHHHHHHhccccceEEEeeec--cchhccccccccC
Confidence            45555 7788888775   3478999999999999999999999999988752    55555554  5567899999999


Q ss_pred             eEEEEEeCCeEEEE--EeCC-ChHHHHHHHHHHhh
Q 032502          101 PTFFFLKDGQQVDK--LVGA-NKPELQKKVAAAVD  132 (139)
Q Consensus       101 Pt~~~~~~g~~~~~--~~g~-~~~~l~~~i~~~~~  132 (139)
                      ||+++|++|+....  +.|. +.+.|.++|.+...
T Consensus        87 Ptl~~f~~g~~~~~~~y~G~~t~~~l~~fi~~~~~  121 (140)
T d2b5ea1          87 PTIVLYPGGKKSESVVYQGSRSLDSLFDFIKENGH  121 (140)
T ss_dssp             SEEEEECCTTSCCCCBCCSCCCHHHHHHHHHHHCT
T ss_pred             CeEEEEECCEEcceeEeCCCCCHHHHHHHHHHcCC
Confidence            99999998876543  4577 99999999988643

>d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Phosducin
domain: Phosducin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.83  E-value=2.8e-20  Score=123.30  Aligned_cols=105  Identities=12%  Similarity=0.248  Sum_probs=90.0

Q ss_pred             CCceEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhhhhhCCCcceeE
Q 032502           23 GGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPT  102 (139)
Q Consensus        23 ~~~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt  102 (139)
                      .+.+..|.+.++|...+... .++.+|||+||++||+.|+.+.+.|.+++.+|++++|+.||.+..+ +..+|++.++||
T Consensus        98 ~G~v~~i~~~~~f~~~v~~~-~~~~~Vvvhfy~~~~~~C~~~~~~l~~lA~~~~~vkF~ki~~~~~~-~~~~~~i~~lPt  175 (217)
T d2trcp_          98 YGFVYELETGEQFLETIEKE-QKVTTIVVNIYEDGVRGCDALNSSLECLAAEYPMVKFCKIRASNTG-AGDRFSSDVLPT  175 (217)
T ss_dssp             CCSEEECCSHHHHHHHHHHS-CTTCEEEEEEECTTSTTHHHHHHHHHHHHTTCTTSEEEEEEHHHHT-CSTTSCGGGCSE
T ss_pred             CCeEEEcCCHHHHHHHHHhc-CCCCeEEEEEEcCCCCChhhhhhhHHHHhhhcccceEEEEccccch-hHHhCCCCCCCe
Confidence            46789999989898887644 3456899999999999999999999999999999999999998765 568999999999


Q ss_pred             EEEEeCCeEEEEEeCC--------ChHHHHHHHHH
Q 032502          103 FFFLKDGQQVDKLVGA--------NKPELQKKVAA  129 (139)
Q Consensus       103 ~~~~~~g~~~~~~~g~--------~~~~l~~~i~~  129 (139)
                      +++|++|+++..+.|.        +...|..+|.+
T Consensus       176 l~~yk~G~~v~~~vg~~~~~g~~~~~~~lE~~L~~  210 (217)
T d2trcp_         176 LLVYKGGELISNFISVAEQFAEDFFAADVESFLNE  210 (217)
T ss_dssp             EEEEETTEEEEEETTGGGGSCSSCCHHHHHHHHHT
T ss_pred             EEEEECCEEEEEEECccccccccCCHHHHHHHHHH
Confidence            9999999999999885        34556666554

>d1z5ye1 c.47.1.10 (E:49-184) Thioredoxin-like protein CcmG (CycY, DsbE) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Escherichia coli [TaxId: 562]

Probab=99.83  E-value=8.8e-21  Score=117.33  Aligned_cols=90  Identities=18%  Similarity=0.325  Sum_probs=73.8

Q ss_pred             hCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCc-----------------------chhhhhhCCCcce
Q 032502           44 KEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDE-----------------------LVEFSTSWDIKAT  100 (139)
Q Consensus        44 ~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~-----------------------~~~~~~~~~v~~~  100 (139)
                      .+||++||+||++||++|+...|.|+++++.  ++.++.++.+.                       +..+...|++.++
T Consensus        18 ~~Gk~vvl~FwatWC~pC~~e~p~l~~~~~~--~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~   95 (136)
T d1z5ye1          18 TQGKPVLLNVWATWCPTSRAEHQYLNQLSAQ--GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYGA   95 (136)
T ss_dssp             HSSSCEEEEEECTTCHHHHHHHHHHHHHHHT--TCCEEEEEESCCHHHHHHHHHHHCCCCSEEEEESSCHHHHHHTCCSB
T ss_pred             cCCCEEEEEEEcCcCCCcCccccchhhhhhh--hhhhcccccccchhhhHHHHHHcCCccceeecccchhHHHhcccCCc
Confidence            3799999999999999999999999999776  45555555532                       2346778999999


Q ss_pred             eEEEEE-eCCeEEEEEeCC-ChHHHHHHHHHHhhccC
Q 032502          101 PTFFFL-KDGQQVDKLVGA-NKPELQKKVAAAVDSVV  135 (139)
Q Consensus       101 Pt~~~~-~~g~~~~~~~g~-~~~~l~~~i~~~~~~~~  135 (139)
                      |+++++ ++|+++.++.|. +.+.+.+.|.+++++..
T Consensus        96 P~~~liD~~G~i~~~~~G~~~~~~l~~~i~~ll~kl~  132 (136)
T d1z5ye1          96 PETFLIDGNGIIRYRHAGDLNPRVWEEEIKPLWEKYS  132 (136)
T ss_dssp             SEEEEECTTSCEEEEEESCCCHHHHHHHTHHHHHHHH
T ss_pred             ceEEEEcCCCEEEEEEEcCCCHHHHHHHHHHHHHHHH
Confidence            987777 999999999998 88888888888877643

>d2b5xa1 c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase YkuV {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: thiol:disulfide oxidoreductase YkuV
species: Bacillus subtilis [TaxId: 1423]

Probab=99.81  E-value=7.7e-20  Score=113.96  Aligned_cols=91  Identities=21%  Similarity=0.358  Sum_probs=76.2

Q ss_pred             HHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCC-cEEEEEeCCc---------------------------chhh
Q 032502           40 SEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVDE---------------------------LVEF   91 (139)
Q Consensus        40 ~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~-v~~~~vd~~~---------------------------~~~~   91 (139)
                      ......+|+++|+||++||++|+...|.+.++++++++ +.++.++.+.                           ...+
T Consensus        23 ~~~~~~~k~vvl~f~a~~C~~C~~~~p~l~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~  102 (143)
T d2b5xa1          23 REQLIGEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQDQLNVVAVHMPRSEDDLDPGKIKETAAEHDITQPIFVDSDHAL  102 (143)
T ss_dssp             HHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTSEEEEEECCCSTTTSSHHHHHHHHHHTTCCSCEEECSSCHH
T ss_pred             cHHHhCCCEEEEEEEcCCCcchhhhhhhhhhhhhhhhccccceeEEeeccccccchhhhhhHHHhhccCccccccCccch
Confidence            34446789999999999999999999999999999875 8888887631                           2235


Q ss_pred             hhhCCCcceeEEEEE-eCCeEEEEEeCC-ChHHHHHHHHHH
Q 032502           92 STSWDIKATPTFFFL-KDGQQVDKLVGA-NKPELQKKVAAA  130 (139)
Q Consensus        92 ~~~~~v~~~Pt~~~~-~~g~~~~~~~g~-~~~~l~~~i~~~  130 (139)
                      .+.|++.++|+++++ ++|+++.+..|. +.+.+.+.|+++
T Consensus       103 ~~~~~v~~~P~~~~id~~G~i~~~~~G~~~~~~l~~~l~~l  143 (143)
T d2b5xa1         103 TDAFENEYVPAYYVFDKTGQLRHFQAGGSGMKMLEKRVNRV  143 (143)
T ss_dssp             HHHTCCCCSSEEEEECTTCBEEEEEESCSTTHHHHHHHHHH
T ss_pred             HHHcCCCcCCEEEEECCCCEEEEEEECCCCHHHHHHHHHhC
Confidence            778999999998888 999999999999 888898888764

>d1knga_ c.47.1.10 (A:) Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=99.80  E-value=1.1e-19  Score=113.28  Aligned_cols=95  Identities=25%  Similarity=0.523  Sum_probs=78.2

Q ss_pred             HHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCC-----------------------cchhhhhhC
Q 032502           39 MSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVD-----------------------ELVEFSTSW   95 (139)
Q Consensus        39 ~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~-----------------------~~~~~~~~~   95 (139)
                      +..+..+||++||+||++||++|+.+.|.+.++.+.+ ++.++.+..+                       .+..+.+.|
T Consensus        24 ~~~~~~kgK~vll~fwa~wC~~C~~~~p~l~~l~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  102 (144)
T d1knga_          24 LDPAAFKGKVSLVNVWASWCVPCHDEAPLLTELGKDK-RFQLVGINYKDAADNARRFLGRYGNPFGRVGVDANGRASIEW  102 (144)
T ss_dssp             BCGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHTTCT-TSEEEEEEESCCHHHHHHHHHHHCCCCSEEEEETTSHHHHHT
T ss_pred             cCHHHhCCCEEEEEeeccccccccccCchhhhhhhcc-CceeEEEEeeechHHHHHHHHHcCCccccccccccchhhhhc
Confidence            4445568999999999999999999999999997776 4555555442                       234578899


Q ss_pred             CCcceeEEEEE-eCCeEEEEEeCC-ChHHHHHHHHHHhhcc
Q 032502           96 DIKATPTFFFL-KDGQQVDKLVGA-NKPELQKKVAAAVDSV  134 (139)
Q Consensus        96 ~v~~~Pt~~~~-~~g~~~~~~~g~-~~~~l~~~i~~~~~~~  134 (139)
                      ++.++|+++++ ++|+++.+..|. +.+++.+.|.++++++
T Consensus       103 ~v~~~P~~~liD~~G~i~~~~~G~~~~~~l~~~i~~~l~ka  143 (144)
T d1knga_         103 GVYGVPETFVVGREGTIVYKLVGPITPDNLRSVLLPQMEKA  143 (144)
T ss_dssp             TCCSSCEEEEECTTSBEEEEEESCCCHHHHHHTHHHHHHHH
T ss_pred             CccccceEEEEcCCCeEEEEEeCCCCHHHHHHHHHHHHHHh
Confidence            99999988888 899999999999 8999999998888764

>d2djja1 c.47.1.2 (A:6-121) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

Probab=99.80  E-value=4.9e-21  Score=115.41  Aligned_cols=104  Identities=22%  Similarity=0.379  Sum_probs=78.9

Q ss_pred             ceEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCC---cEEEEEeCCcchhhhhhCCCccee
Q 032502           25 NVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS---LMFLLVDVDELVEFSTSWDIKATP  101 (139)
Q Consensus        25 ~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~---v~~~~vd~~~~~~~~~~~~v~~~P  101 (139)
                      +|..+ +.++|++.+.   .+++++||+||++||++|+.+.|.++++++.+.+   ..++.++.......+.+++|.++|
T Consensus         3 ~V~~l-t~~nF~~~v~---~~~k~vlV~fya~wC~~Ck~~~p~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P   78 (116)
T d2djja1           3 PVTVV-VAKNYNEIVL---DDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATANDVPDEIQGFP   78 (116)
T ss_dssp             SSEEC-CTTTTTTSSS---CTTSCEEEEEECSSCTTHHHHHHHHHHHHHHHTTSSCTTSSEEEEEETTTSCCSSCCSSSS
T ss_pred             CcEEc-ccCCHHHHHh---cCCCCEEEEEEecccccccccchHHHHHHHHHhcccccceeEEEecccchhhhcccccCCC
Confidence            34443 5677776653   4578999999999999999999999999998864   223445555555666789999999


Q ss_pred             EEEEEeCCeEE--EEEeCC-ChHHHHHHHHHHhh
Q 032502          102 TFFFLKDGQQV--DKLVGA-NKPELQKKVAAAVD  132 (139)
Q Consensus       102 t~~~~~~g~~~--~~~~g~-~~~~l~~~i~~~~~  132 (139)
                      |+++|++|+..  ..+.|. +.+.|.++|.+...
T Consensus        79 ti~~f~~g~~~~~~~~~g~~~~~~l~~fi~~~~~  112 (116)
T d2djja1          79 TIKLYPAGAKGQPVTYSGSRTVEDLIKFIAENGK  112 (116)
T ss_dssp             EEEEECSSCTTSCCCCCCCSCHHHHHHHHHHTSS
T ss_pred             EEEEEECCccCceEEecCCCCHHHHHHHHHHccC
Confidence            99999877533  245566 89999999988654

>d1zzoa1 c.47.1.10 (A:45-178) Lipoprotein DsbF {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Lipoprotein DsbF
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.80  E-value=4.2e-19  Score=109.34  Aligned_cols=91  Identities=23%  Similarity=0.400  Sum_probs=76.4

Q ss_pred             HHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCc-----------------------chhhhhhC
Q 032502           39 MSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDE-----------------------LVEFSTSW   95 (139)
Q Consensus        39 ~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~-----------------------~~~~~~~~   95 (139)
                      +.+...++|++||+||++||++|+...|.+.+++++++++.++.++.++                       +..+.+.|
T Consensus        18 ~~l~~~~Gk~vll~fwa~wC~~C~~~~p~l~~l~~~~~~~~~v~v~~~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~   97 (134)
T d1zzoa1          18 FHGESLLGKPAVLWFWAPWCPTCQGEAPVVGQVAASHPEVTFVGVAGLDQVPAMQEFVNKYPVKTFTQLADTDGSVWANF   97 (134)
T ss_dssp             EEGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCHHHHHHHHHHTTCTTSEEEECTTCHHHHHT
T ss_pred             EeHHHhCCCEEEEEecccccCcccccchhhHHHHhhhcccccccccccccchhHHHHHHhcCCcceeEEeeccchHHHhc
Confidence            4555567999999999999999999999999999999988888887642                       23567889


Q ss_pred             CCcceeEEEEE-eCCeEEEEEeCC-ChHHHHHHHHHH
Q 032502           96 DIKATPTFFFL-KDGQQVDKLVGA-NKPELQKKVAAA  130 (139)
Q Consensus        96 ~v~~~Pt~~~~-~~g~~~~~~~g~-~~~~l~~~i~~~  130 (139)
                      ++.++|+++++ ++|++.. ..|. +.+++.+.|+++
T Consensus        98 ~v~~~P~~~iiD~~G~i~~-~~g~~~~~~l~~~i~~L  133 (134)
T d1zzoa1          98 GVTQQPAYAFVDPHGNVDV-VRGRMSQDELTRRVTAL  133 (134)
T ss_dssp             TCCSSSEEEEECTTCCEEE-EESCCCHHHHHHHHHHH
T ss_pred             CCCccCeEEEECCCCeEEE-EECCCCHHHHHHHHHhh
Confidence            99999998888 8898755 4576 899999998876

>d2cvba1 c.47.1.10 (A:2-188) Probable thiol-disulfide isomerase/thioredoxin TTHA0593 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Probable thiol-disulfide isomerase/thioredoxin TTHA0593
species: Thermus thermophilus [TaxId: 274]

Probab=99.79  E-value=1.5e-19  Score=117.25  Aligned_cols=122  Identities=13%  Similarity=0.156  Sum_probs=96.5

Q ss_pred             CCCcccCCCceEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCC-cEEEEEeCC--------
Q 032502           16 EHPVEFAGGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVD--------   86 (139)
Q Consensus        16 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~-v~~~~vd~~--------   86 (139)
                      +.|....|.++|++...+...+.+.++..++|++||.||++||++|+...|.|.+++++|.+ +.++.++..        
T Consensus         2 ~~p~l~vG~~aPdF~l~d~~G~~~~Lsd~kGk~vvl~FwatwCp~C~~~~p~l~~l~~~y~~~v~~v~i~snd~~~~~~~   81 (187)
T d2cvba1           2 QYPELPLESPLIDAELPDPRGGRYRLSQFHEPLLAVVFMCNHCPYVKGSIGELVALAERYRGKVAFVGINANDYEKYPED   81 (187)
T ss_dssp             BSCCCCTTCBCCCCEEECTTSCEEEGGGCCSSEEEEEEECSSCHHHHTTHHHHHHHHHHTTTTEEEEEEECCCTTTCGGG
T ss_pred             CCCCCCCCCccCccEeecCCCCEEEHHHhCCCeEEEEEeCCCCccchhhhhhhhhhhhhccccceeeeeecccccccccc
Confidence            35677788888888766666667778888999999999999999999999999999999975 788887641        


Q ss_pred             ---------------------cchhhhhhCCCcceeEEEEE-eCCeEEEEEe--C------C-ChHHHHHHHHHHhhccC
Q 032502           87 ---------------------ELVEFSTSWDIKATPTFFFL-KDGQQVDKLV--G------A-NKPELQKKVAAAVDSVV  135 (139)
Q Consensus        87 ---------------------~~~~~~~~~~v~~~Pt~~~~-~~g~~~~~~~--g------~-~~~~l~~~i~~~~~~~~  135 (139)
                                           ....+.+.|++..+|+++++ ++|+++++-.  .      . +...|.+.|+++++...
T Consensus        82 ~~e~~~~~~~~~~~~~p~l~D~~~~~~~~~~v~~~P~~~liD~~G~i~y~G~idd~~~~~~~~~~~~L~~Ai~~ll~g~~  161 (187)
T d2cvba1          82 APEKMAAFAEEHGIFFPYLLDETQEVAKAYRALRTPEVFLFDERRLLRYHGRVNDNPKDPSKVQSHDLEAAIEALLRGEE  161 (187)
T ss_dssp             SHHHHHHHHHHHTCCSCEEECSSSHHHHHTTCCEESEEEEECTTCBEEEEECSSSCTTCGGGCCCCHHHHHHHHHHTTCC
T ss_pred             chHHHHHHHHHhCCcceeeechhhhhcccccccceeeEEEEcCCCeEEEEeeecCCCCCCCCCCHHHHHHHHHHHHcCCC
Confidence                                 23356888999999988887 8999987521  0      1 34569999999988765


Q ss_pred             CC
Q 032502          136 PS  137 (139)
Q Consensus       136 ~~  137 (139)
                      ..
T Consensus       162 ~~  163 (187)
T d2cvba1         162 PP  163 (187)
T ss_dssp             CC
T ss_pred             CC
Confidence            43

>d1lu4a_ c.47.1.10 (A:) Soluble secreted antigen MPT53 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Soluble secreted antigen MPT53
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.79  E-value=8.7e-20  Score=112.55  Aligned_cols=92  Identities=26%  Similarity=0.416  Sum_probs=75.4

Q ss_pred             HHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcc----------------------hhhhhhCC
Q 032502           39 MSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDEL----------------------VEFSTSWD   96 (139)
Q Consensus        39 ~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~----------------------~~~~~~~~   96 (139)
                      +.+...++|++||+||++||++|+...|.|.+++.+++++.++.++.+.+                      ..+++.|+
T Consensus        17 ~~l~~~~Gk~vll~F~a~wC~~C~~~~p~l~~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~   96 (134)
T d1lu4a_          17 FDGASLQGKPAVLWFWTPWCPFCNAEAPSLSQVAAANPAVTFVGIATRADVGAMQSFVSKYNLNFTNLNDADGVIWARYN   96 (134)
T ss_dssp             EEGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCHHHHHHHHHHHTCCSEEEECTTSHHHHHTT
T ss_pred             EcHHHhCCCEEEEEEeecccCCceecchhHHHHhhhhccccccccccccchhhhhhhhhhhccccceeeCchHHHHHHcC
Confidence            34445579999999999999999999999999999999999999987642                      34677899


Q ss_pred             CcceeEEEEE-eCCeEEEEE--eCC-ChHHHHHHHHHH
Q 032502           97 IKATPTFFFL-KDGQQVDKL--VGA-NKPELQKKVAAA  130 (139)
Q Consensus        97 v~~~Pt~~~~-~~g~~~~~~--~g~-~~~~l~~~i~~~  130 (139)
                      +.++|+++++ ++|++....  .|. +.+++.+.|.++
T Consensus        97 v~~~P~~~lid~~G~i~~v~~~~g~~~~~~l~~~l~~L  134 (134)
T d1lu4a_          97 VPWQPAFVFYRADGTSTFVNNPTAAMSQDELSGRVAAL  134 (134)
T ss_dssp             CCSSSEEEEECTTSCEEEECCSSSCCCHHHHHHHHHHC
T ss_pred             CCcCCEEEEEeCCCeEEEEeccCCCCCHHHHHHHHHcC
Confidence            9999998888 888876543  345 888888888763

>d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain {Neisseria meningitidis serogroup A [TaxId: 65699]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain
species: Neisseria meningitidis serogroup A [TaxId: 65699]

Probab=99.79  E-value=4.3e-19  Score=110.37  Aligned_cols=93  Identities=19%  Similarity=0.257  Sum_probs=78.0

Q ss_pred             HHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCC--CcEEEEEeCC----------------------------cc
Q 032502           39 MSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP--SLMFLLVDVD----------------------------EL   88 (139)
Q Consensus        39 ~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~--~v~~~~vd~~----------------------------~~   88 (139)
                      +.+...++|++||+||++||++|+...|.+.++.+++.  ++.++.+..+                            .+
T Consensus        16 ~~l~~~~gk~vvl~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~   95 (143)
T d2fy6a1          16 ASVYLKKDKPTLIKFWASWCPLCLSELGQTEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLNYPKLPVVTDNG   95 (143)
T ss_dssp             GGGGCCTTSCEEEEEECTTCHHHHTTHHHHHHHHHCGGGTTSEEEEEECTTSTTCCCTTHHHHHHTTSCCTTSCEEECTT
T ss_pred             eeHHHhCCCEEEEEEECCCCccccccCcchhhhhhhhccCCcEEEEEeeeecccccchhhhhhhhhhcCCcccccccccc
Confidence            45556789999999999999999999999999988876  5777777653                            12


Q ss_pred             hhhhhhCCCcceeEEEEE-eCCeEEEEEeCC-ChHHHHHHHHHHh
Q 032502           89 VEFSTSWDIKATPTFFFL-KDGQQVDKLVGA-NKPELQKKVAAAV  131 (139)
Q Consensus        89 ~~~~~~~~v~~~Pt~~~~-~~g~~~~~~~g~-~~~~l~~~i~~~~  131 (139)
                      ..+++.|++.++|+++++ ++|+++.+..|. +.+++.++|+++.
T Consensus        96 ~~~~~~~~v~~~P~~~liD~~G~i~~~~~G~~~~~~~~~~l~~~~  140 (143)
T d2fy6a1          96 GTIAQSLNISVYPSWALIGKDGDVQRIVKGSINEAQALALIRDPN  140 (143)
T ss_dssp             CHHHHHTTCCSSSEEEEECTTSCEEEEEESCCCHHHHHHHHHCTT
T ss_pred             hHHHHHcCCCccCEEEEECCCCEEEEEEECCCCHHHHHHHHHHHh
Confidence            356789999999999888 999999999999 8888888887654

>d1st9a_ c.47.1.10 (A:) Thiol-disulfide oxidoreductase ResA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol-disulfide oxidoreductase ResA
species: Bacillus subtilis [TaxId: 1423]

Probab=99.76  E-value=7.5e-19  Score=108.61  Aligned_cols=108  Identities=21%  Similarity=0.477  Sum_probs=82.6

Q ss_pred             CCceEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCC--CcEEEEEeCCcc------------
Q 032502           23 GGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP--SLMFLLVDVDEL------------   88 (139)
Q Consensus        23 ~~~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~~------------   88 (139)
                      |..+|++.-.+...+.+.+...+++++||+||++||++|....+.+.++.+++.  ++.++.++.++.            
T Consensus         2 G~~~P~f~l~~~~G~~~~l~~~~gk~~li~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~   81 (137)
T d1st9a_           2 GSDAPNFVLEDTNGKRIELSDLKGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQGVEIVAVNVGESKIAVHNFMKSYG   81 (137)
T ss_dssp             CEECCCCEEECTTSCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCHHHHHHHHHHTT
T ss_pred             cCcCCCeEEECCCcCEEeHHHhCCCEEEEEEeeccccceeecccccccccccccccccccccccccchhhhHHHHHHHcC
Confidence            334454443333334455555679999999999999999999999999999886  488888876532            


Q ss_pred             ----------hhhhhhCCCcceeEEEEE-eCCeEEEEEeCC-ChHHHHHHHHHH
Q 032502           89 ----------VEFSTSWDIKATPTFFFL-KDGQQVDKLVGA-NKPELQKKVAAA  130 (139)
Q Consensus        89 ----------~~~~~~~~v~~~Pt~~~~-~~g~~~~~~~g~-~~~~l~~~i~~~  130 (139)
                                ..+.+.|++.++|+++++ ++|+++.++.|. +.+.+.+.|+.+
T Consensus        82 ~~~~~~~d~~~~~~~~~~v~~~P~~~liD~~G~i~~~~~G~~~~~~~~~~l~~l  135 (137)
T d1st9a_          82 VNFPVVLDTDRQVLDAYDVSPLPTTFLINPEGKVVKVVTGTMTESMIHDYMNLI  135 (137)
T ss_dssp             CCSCEEEETTSHHHHHTTCCSSCEEEEECTTSEEEEEEESCCCHHHHHHHHHHH
T ss_pred             CCccccccccchhhhhhhccccceEEEECCCCEEEEEEECCCCHHHHHHHHHhh
Confidence                      245678999999987777 999999999998 888777766543

>d2c0ga2 c.47.1.7 (A:1024-1145) Windbeutel, N-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Windbeutel, N-terminal domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.75  E-value=7.8e-18  Score=102.11  Aligned_cols=98  Identities=14%  Similarity=0.151  Sum_probs=77.4

Q ss_pred             echhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhC----CCcEEEEEeCC-----cchhhhhhCCC--c
Q 032502           30 TTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKY----PSLMFLLVDVD-----ELVEFSTSWDI--K   98 (139)
Q Consensus        30 ~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~----~~v~~~~vd~~-----~~~~~~~~~~v--~   98 (139)
                      .+.++|++.+    .+++.+||.||++||++|+  .|.+.++++.+    .++.+..||++     ++.+++.+|+|  .
T Consensus         7 L~~~nFd~~v----~~~~~~lV~Fya~wC~~ck--~p~f~kla~~~~~~~~~v~ia~Vd~~~~~~~~n~~l~~~~~i~~~   80 (122)
T d2c0ga2           7 LDELSFEKTV----ERFPYSVVKFDIASPYGEK--HEAFTAFSKSAHKATKDLLIATVGVKDYGELENKALGDRYKVDDK   80 (122)
T ss_dssp             CCTTTHHHHH----TTSSEEEEEEEESSCCSHH--HHHHHHHHHHHHHHCSSEEEEEEEECSSTTCTTHHHHHHTTCCTT
T ss_pred             cChHhHHHHH----hcCCcEEEEEECCCCCccc--CHHHHHHHHHHHHhCCCeEEEeccccccccccCHHHHHHhhcccC
Confidence            3667788888    4678999999999999999  38887777664    46888999885     46889999998  5


Q ss_pred             ceeEEEEEeCCeEEE---EEeCC-ChHHHHHHHHHHhhc
Q 032502           99 ATPTFFFLKDGQQVD---KLVGA-NKPELQKKVAAAVDS  133 (139)
Q Consensus        99 ~~Pt~~~~~~g~~~~---~~~g~-~~~~l~~~i~~~~~~  133 (139)
                      ++||+++|++|....   .+.|. +.+.|.++|.+..+.
T Consensus        81 ~~PTi~~f~~g~~~~~~~~~~g~rt~~~l~~fv~~~~~~  119 (122)
T d2c0ga2          81 NFPSIFLFKGNADEYVQLPSHVDVTLDNLKAFVSANTPL  119 (122)
T ss_dssp             SCCEEEEESSSSSSEEECCTTSCCCHHHHHHHHHHHSSC
T ss_pred             CCCcEEEEeCCcccccccccCCCCCHHHHHHHHHHhcCc
Confidence            799999998775332   23354 899999999987654

>d1o73a_ c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei brucei [TaxId: 5702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Trypanosoma brucei brucei [TaxId: 5702]

Probab=99.72  E-value=2.2e-18  Score=107.40  Aligned_cols=77  Identities=32%  Similarity=0.619  Sum_probs=62.9

Q ss_pred             HHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCC---CcEEEEEeCCcc------------------------hh
Q 032502           38 KMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP---SLMFLLVDVDEL------------------------VE   90 (139)
Q Consensus        38 ~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~---~v~~~~vd~~~~------------------------~~   90 (139)
                      .+.++..+||+++|+||++||++|+.+.|.|.++++++.   ++.++.|+.+..                        ..
T Consensus        20 ~v~l~~~~GK~vvl~FwatwC~~C~~~~p~l~~l~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (144)
T d1o73a_          20 EVSLGSLVGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVAKNFEVVLISWDENESDFHDYYGKMPWLALPFDQRSTVSE   99 (144)
T ss_dssp             CBCSGGGTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHH
T ss_pred             EEeHHHhCCCEEEEEeChhhCccchhhhHHHHHHHHHHhhccCeEEEEEecchhHHHHHHHHHhccccceeeeccchHHH
Confidence            355566789999999999999999999999999999884   488888888642                        13


Q ss_pred             hhhhCCCcceeEEEEE-eC-CeEEEE
Q 032502           91 FSTSWDIKATPTFFFL-KD-GQQVDK  114 (139)
Q Consensus        91 ~~~~~~v~~~Pt~~~~-~~-g~~~~~  114 (139)
                      +.+.|+|.++|+++++ ++ |+++..
T Consensus       100 l~~~y~v~~~Pt~~lID~~~G~Ii~~  125 (144)
T d1o73a_         100 LGKTFGVESIPTLITINADTGAIIGT  125 (144)
T ss_dssp             HHHHHTCCSSSEEEEEETTTCCEEES
T ss_pred             HHHHcCCCcCCEEEEEECCCCEEEee
Confidence            5778999999998888 56 777654

>d1jfua_ c.47.1.10 (A:) Membrane-anchored thioredoxin-like protein TlpA, soluble domain {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Membrane-anchored thioredoxin-like protein TlpA, soluble domain
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=99.70  E-value=3.3e-17  Score=105.08  Aligned_cols=110  Identities=21%  Similarity=0.348  Sum_probs=83.5

Q ss_pred             CCceEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCC--CcEEEEEeCCc--ch---------
Q 032502           23 GGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP--SLMFLLVDVDE--LV---------   89 (139)
Q Consensus        23 ~~~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~--~~---------   89 (139)
                      +..+|++...+...+.+.+...++|++||+||++||+.|+...+.+.++++.+.  ++.++.+..+.  ..         
T Consensus        33 ~~~~Pdf~l~d~~G~~v~L~~~kGK~vll~F~a~wC~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~  112 (176)
T d1jfua_          33 PLKLPDLAFEDADGKPKKLSDFRGKTLLVNLWATWCVPCRKEMPALDELQGKLSGPNFEVVAINIDTRDPEKPKTFLKEA  112 (176)
T ss_dssp             CCBCCCCEEECTTSCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHCBTTEEEEEEECCCSCTTHHHHHHHHT
T ss_pred             CCcCCCeEEECCCcCEEeHHHhCCCEEEEEeccCcccchHHHHHhhhhccccccccccccccccccccchhhhhhhHhhh
Confidence            335666666665566677777889999999999999999999999999988875  46666665541  11         


Q ss_pred             -----------------hhhhhCCCcceeEEEEE-eCCeEEEEEeCC---ChHHHHHHHHHHhh
Q 032502           90 -----------------EFSTSWDIKATPTFFFL-KDGQQVDKLVGA---NKPELQKKVAAAVD  132 (139)
Q Consensus        90 -----------------~~~~~~~v~~~Pt~~~~-~~g~~~~~~~g~---~~~~l~~~i~~~~~  132 (139)
                                       .+...|++.++|+++++ ++|+++.++.|.   +.+++.+.|+.+++
T Consensus       113 ~~~~~~~~~d~~~~~~~~~~~~~~v~~~P~~~lID~~G~I~~~~~G~~~~~~~e~~~~l~al~~  176 (176)
T d1jfua_         113 NLTRLGYFNDQKAKVFQDLKAIGRALGMPTSVLVDPQGCEIATIAGPAEWASEDALKLIRAATG  176 (176)
T ss_dssp             TCCTTCCEECTTCHHHHHHHTTTCCSSSSEEEEECTTSBEEEEEESCCCTTSHHHHHHHHHHHC
T ss_pred             CCcceeeeecchhHHHHHHhhhccCCCCCeEEEEcCCCEEEEEEECCCCCChHHHHHHHHHhcC
Confidence                             12234567789997777 999999999886   56888888888763

>d1i5ga_ c.47.1.10 (A:) Tryparedoxin II {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin II
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.69  E-value=4.9e-17  Score=101.21  Aligned_cols=75  Identities=29%  Similarity=0.546  Sum_probs=60.8

Q ss_pred             HHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCC---CcEEEEEeCCcch------------------------hh
Q 032502           39 MSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP---SLMFLLVDVDELV------------------------EF   91 (139)
Q Consensus        39 ~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~---~v~~~~vd~~~~~------------------------~~   91 (139)
                      +.++..++|+++|+||++||++|+...|.|.++++++.   ++.++.|+.|...                        .+
T Consensus        21 v~ls~l~GK~vll~FwAtWC~pC~~~~p~L~~l~~~~~~~~~~~vi~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l  100 (144)
T d1i5ga_          21 IALPSLAGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDESAEDFKDYYAKMPWLALPFEDRKGMEFL  100 (144)
T ss_dssp             EEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHH
T ss_pred             eeHHHcCCCEEEEEEEecCCchHhhhhHhHHHHHHHHHhccCcEEEEEeccccHHHHHHHHHhCCCCceeeEChHHHHHH
Confidence            34455679999999999999999999999999988875   4778888876421                        25


Q ss_pred             hhhCCCcceeEEEEE-eC-CeEEE
Q 032502           92 STSWDIKATPTFFFL-KD-GQQVD  113 (139)
Q Consensus        92 ~~~~~v~~~Pt~~~~-~~-g~~~~  113 (139)
                      .+.|+|.++|+++++ ++ |+++.
T Consensus       101 ~~~y~v~~iPt~~lid~~~G~vi~  124 (144)
T d1i5ga_         101 TTGFDVKSIPTLVGVEADSGNIIT  124 (144)
T ss_dssp             HHHTTCCSSSEEEEEETTTCCEEE
T ss_pred             HHHCCCCCcCEEEEEeCCCCEEEe
Confidence            678999999998888 55 77765

>d1sena_ c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein p19, TLP19
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=3.3e-17  Score=100.88  Aligned_cols=104  Identities=18%  Similarity=0.363  Sum_probs=78.2

Q ss_pred             hHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHH---HHHhCCCcEEEEEeCCcchhhhhhC-CCcceeEEEEE-e
Q 032502           33 DIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSE---LSEKYPSLMFLLVDVDELVEFSTSW-DIKATPTFFFL-K  107 (139)
Q Consensus        33 ~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~---~~~~~~~v~~~~vd~~~~~~~~~~~-~v~~~Pt~~~~-~  107 (139)
                      .++++.+..+..++|+++|+||++||++|+.+.+.+.+   +.+...++..+.+|.+........+ ...++|+++++ .
T Consensus        12 ~~~~~al~~A~~~~Kpvlv~F~a~wC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~~~~~~Pt~~~~d~   91 (135)
T d1sena_          12 RTLEDGKKEAAASGLPLMVIIHKSWCGACKALKPKFAESTEISELSHNFVMVNLEDEEEPKDEDFSPDGGYIPRILFLDP   91 (135)
T ss_dssp             CCHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHTCHHHHHHHTTSEEEEEEGGGSCSCGGGCTTCSCSSEEEEECT
T ss_pred             eEHHHHHHHHHHcCCcEEEEEEecCCCCceecchhhhhhHHHHHhcCCcEEEeCCCCcCHHHHHHHhhcccceeEEEECC
Confidence            45777788888899999999999999999999998843   3333346888888888776665543 45578999999 7


Q ss_pred             CCeEEEEEeC----------C-ChHHHHHHHHHHhhccCC
Q 032502          108 DGQQVDKLVG----------A-NKPELQKKVAAAVDSVVP  136 (139)
Q Consensus       108 ~g~~~~~~~g----------~-~~~~l~~~i~~~~~~~~~  136 (139)
                      +|+++....|          . +.+.+.+.+++++++..+
T Consensus        92 ~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~  131 (135)
T d1sena_          92 SGKVHPEIINENGNPSYKYFYVSAEQVVQGMKEAQERLTG  131 (135)
T ss_dssp             TSCBCTTCCCTTSCTTSTTCCCSHHHHHHHHHHHHHHHGG
T ss_pred             CCeEEEEecCCCCCcchhccCCCHHHHHHHHHHHHHHhhc
Confidence            8988766555          2 567777777777665543

>d2dlxa1 c.47.1.24 (A:1-147) UBX domain-containing protein 7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: UAS domain
domain: UBX domain-containing protein 7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=1.7e-16  Score=98.91  Aligned_cols=107  Identities=11%  Similarity=0.135  Sum_probs=84.8

Q ss_pred             eechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhH---HHHHHhCC-CcEEEEEeCCcc--hhhhhhCCCcceeE
Q 032502           29 VTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFF---SELSEKYP-SLMFLLVDVDEL--VEFSTSWDIKATPT  102 (139)
Q Consensus        29 i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l---~~~~~~~~-~v~~~~vd~~~~--~~~~~~~~v~~~Pt  102 (139)
                      +....+|+..+..+..++|+++|+|+++||++|+.|...+   .++.+.+. ++.++.+|.+..  ..++.+|++.++|+
T Consensus        25 i~~~~~~~~A~~~Ak~~~K~llV~~~~~~C~~C~~m~~~v~~d~~V~~~l~~~fV~~~v~~~~~e~~~~~~~y~v~~~Pt  104 (147)
T d2dlxa1          25 LMHKGSFETAKECGQMQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIREHFIFWQVYHDSEEGQRYIQFYKLGDFPY  104 (147)
T ss_dssp             TSCCSCHHHHHHHHHHHTCEEEEEEECSCTTTHHHHHHHTTTCHHHHHHHHHTEEEEEEESSSHHHHHHHHHHTCCSSSE
T ss_pred             ccccCCHHHHHHHHHHcCCcEEEEEecCCCCchHHHHHhccCCHHHHHHHhhheeEeeecccchhhhhhhhheecCceeE
Confidence            3456678888888888999999999999999999986533   33433332 577888888755  67899999999999


Q ss_pred             EEEEe--CCeEEEEEeCCChHHHHHHHHHHhhccC
Q 032502          103 FFFLK--DGQQVDKLVGANKPELQKKVAAAVDSVV  135 (139)
Q Consensus       103 ~~~~~--~g~~~~~~~g~~~~~l~~~i~~~~~~~~  135 (139)
                      ++++.  .|+++..+.+.+.+++...|++++...+
T Consensus       105 i~~idp~~ge~v~~~~~~~~~~fl~~L~~fl~~~~  139 (147)
T d2dlxa1         105 VSILDPRTGQKLVEWHQLDVSSFLDQVTGFLGEHG  139 (147)
T ss_dssp             EEEECTTTCCCCEEESSCCHHHHHHHHHHHHHHTC
T ss_pred             EEEEeCCCCeEecccCCCCHHHHHHHHHHHHhhCC
Confidence            99993  5888877655699999999999888543

>d1o8xa_ c.47.1.10 (A:) Tryparedoxin I {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.64  E-value=6.6e-17  Score=100.42  Aligned_cols=78  Identities=28%  Similarity=0.537  Sum_probs=62.7

Q ss_pred             HHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCC---CcEEEEEeCCcc------------------------h
Q 032502           37 QKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP---SLMFLLVDVDEL------------------------V   89 (139)
Q Consensus        37 ~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~---~v~~~~vd~~~~------------------------~   89 (139)
                      ..+.+...++|+++|+||++||+.|+...+.+.++++++.   ++.++.++.+..                        .
T Consensus        17 ~~v~l~~l~GK~vll~Fwa~wC~~C~~~~~~l~~l~~~~~~~~~~~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~d~~~   96 (144)
T d1o8xa_          17 GEVEVKSLAGKLVFFYFSASWCPPARGFTPQLIEFYDKFHESKNFEVVFCTWDEEEDGFAGYFAKMPWLAVPFAQSEAVQ   96 (144)
T ss_dssp             EEEEGGGGTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCGGGHHHHH
T ss_pred             CEEeHHHhCCCEEEEEeccccccccccccchhHHhhhhcccccccccccccccccHHHHHHHHhhccccceeeecccchh
Confidence            3455556789999999999999999999999999999985   477777777632                        2


Q ss_pred             hhhhhCCCcceeEEEEE-eC-CeEEEE
Q 032502           90 EFSTSWDIKATPTFFFL-KD-GQQVDK  114 (139)
Q Consensus        90 ~~~~~~~v~~~Pt~~~~-~~-g~~~~~  114 (139)
                      .+.+.|+|.++|+++++ ++ |+++..
T Consensus        97 ~l~~~y~v~~~Pt~~liD~~~G~Vi~~  123 (144)
T d1o8xa_          97 KLSKHFNVESIPTLIGVDADSGDVVTT  123 (144)
T ss_dssp             HHHHHTTCCSSSEEEEEETTTCCEEES
T ss_pred             hHHHHcCCCcCCEEEEEeCCCCEEEEE
Confidence            46778999999998888 56 677643

>d1g7ea_ c.47.1.7 (A:) Endoplasmic reticulum protein ERP29, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Endoplasmic reticulum protein ERP29, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.63  E-value=2e-16  Score=95.73  Aligned_cols=94  Identities=16%  Similarity=0.230  Sum_probs=71.9

Q ss_pred             chhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCC---C-----cEEEEEeCCcchhhhhhCC--Ccce
Q 032502           31 TKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP---S-----LMFLLVDVDELVEFSTSWD--IKAT  100 (139)
Q Consensus        31 ~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~---~-----v~~~~vd~~~~~~~~~~~~--v~~~  100 (139)
                      +.++|++.+    .+++.+||.||++||..|..  |.++++++.+.   +     |.+..+|++.+..++.+|+  |.++
T Consensus        10 ~~~nFd~~i----~~~~~~lV~F~~~wc~~~~~--~~~~~la~~~~~~~~~~~~~V~~~~vd~~~n~~l~~~~~~~I~~y   83 (122)
T d1g7ea_          10 DTVTFYKVI----PKSKFVLVKFDTQYPYGEKQ--DEFKRLAENSASSDDLLVAEVGISDYGDKLNMELSEKYKLDKESY   83 (122)
T ss_dssp             SHHHHHHHG----GGSSEEEEEEECSSCCTTTT--HHHHHHHHHGGGCSSEEEEEEESCCTTSCHHHHHHHHHTCSSSSC
T ss_pred             CHHhHHHHH----hhCCeEEEEEecCCcCcccC--HHHHHHHHHHHHHHHHhhhccceeeccccccHHHHHhhcccccCC
Confidence            677787777    46789999999999987753  67777776664   2     3334457778889988865  7899


Q ss_pred             eEEEEEeCCeEE--EEEeCC-ChHHHHHHHHHH
Q 032502          101 PTFFFLKDGQQV--DKLVGA-NKPELQKKVAAA  130 (139)
Q Consensus       101 Pt~~~~~~g~~~--~~~~g~-~~~~l~~~i~~~  130 (139)
                      ||+++|++|+..  ..+.|. +.+.|.+||++-
T Consensus        84 PTi~~f~~G~~~~~~~y~G~rt~~~l~~fi~~~  116 (122)
T d1g7ea_          84 PVFYLFRDGDFENPVPYSGAVKVGAIQRWLKGQ  116 (122)
T ss_dssp             EEEEEEESSCCCCCEEEESCCCHHHHHHHHHTT
T ss_pred             CeEEEEecCcccCceecCCCCCHHHHHHHHHhc
Confidence            999999888633  456677 999999999764

>d1wjka_ c.47.1.1 (A:) Thioredoxin-like structure containing protein C330018D20Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like structure containing protein C330018D20Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.61  E-value=3.1e-16  Score=91.69  Aligned_cols=84  Identities=15%  Similarity=0.295  Sum_probs=70.3

Q ss_pred             CCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhhhhhCCCcceeEEEEEeCCeEEEEEeCC-ChHHH
Q 032502           45 EGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGA-NKPEL  123 (139)
Q Consensus        45 ~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~l  123 (139)
                      +.-++|+.||++||+.|+.+.+.|+++...++ ..++.+|.++++++.++|+++ +|++++  +|+.+.  .|. +.++|
T Consensus        14 ~~~p~i~lft~~~C~~C~~a~~~L~~~~~~~~-~~~v~vd~~~~~~l~~~y~~~-VPvl~i--dg~~~~--~g~~d~~~L   87 (100)
T d1wjka_          14 RALPVLTLFTKAPCPLCDEAKEVLQPYKDRFI-LQEVDITLPENSTWYERYKFD-IPVFHL--NGQFLM--MHRVNTSKL   87 (100)
T ss_dssp             CCCCEEEEEECSSCHHHHHHHHHTSTTSSSSE-EEEEETTSSTTHHHHHHSSSS-CSEEEE--SSSEEE--ESSCCHHHH
T ss_pred             CCCCEEEEEECCCCCChHHHHHHHHHhhhhcc-eEEEecccccCHHHHHHhccc-CCceee--cCceEE--eCCCCHHHH
Confidence            34578999999999999999999999987774 678888999999999999997 998766  777763  355 99999


Q ss_pred             HHHHHHHhhcc
Q 032502          124 QKKVAAAVDSV  134 (139)
Q Consensus       124 ~~~i~~~~~~~  134 (139)
                      .++|+++.+..
T Consensus        88 ~~~L~~l~~~~   98 (100)
T d1wjka_          88 EKQLRKLSGPS   98 (100)
T ss_dssp             HHHHHSSSCSS
T ss_pred             HHHHHHHhcCC
Confidence            99998875543

>d1z6na1 c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Hypothetical protein PA1234
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.48  E-value=2.5e-13  Score=86.00  Aligned_cols=75  Identities=12%  Similarity=0.224  Sum_probs=64.8

Q ss_pred             hCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhhhhhC---CCcceeEEEEE-eCCeEEEEEeCC
Q 032502           44 KEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSW---DIKATPTFFFL-KDGQQVDKLVGA  118 (139)
Q Consensus        44 ~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~---~v~~~Pt~~~~-~~g~~~~~~~g~  118 (139)
                      .+++.+++.||++||++|+...|.|.++++.++++.+..|+.+.+++..+.|   +...+|.++++ .++.....+.+.
T Consensus        52 ~~~~~~~l~~~~tWC~~C~~~~P~l~~l~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~  130 (166)
T d1z6na1          52 IERRYRLLVAGEMWCPDCQINLAALDFAQRLQPNIELAIISKGRAEDDLRQRLALERIAIPLVLVLDEEFNLLGRFVER  130 (166)
T ss_dssp             CCSCEEEEEECCTTCHHHHHHHHHHHHHHHHCTTEEEEEECHHHHHHHTTTTTTCSSCCSSEEEEECTTCCEEEEEESS
T ss_pred             hcCCeEEEEEEeCcCccHHHHHHHHHHHHHHCCCCcEEEEECccCHHHHHHHHHhccccccceeecCccchhccccccc
Confidence            4678999999999999999999999999999999999999999999988888   45577787777 677777777655

>d2cx4a1 c.47.1.10 (A:4-163) Bacterioferritin comigratory protein {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Bacterioferritin comigratory protein
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=99.48  E-value=6e-14  Score=88.20  Aligned_cols=112  Identities=17%  Similarity=0.183  Sum_probs=77.3

Q ss_pred             CCCceEEeechhHHHHHHHHHh--hCCCEEEEEEe-CCCChhhhhhhHhHHHHHHhCC--CcEEEEEeCCc---------
Q 032502           22 AGGNVSLVTTKDIWDQKMSEAS--KEGKIVIANFS-ATWCGPCRMIAPFFSELSEKYP--SLMFLLVDVDE---------   87 (139)
Q Consensus        22 ~~~~~~~i~~~~~~~~~~~~~~--~~~k~vlv~f~-~~~C~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~---------   87 (139)
                      .|..+|++...+...+.+.++.  .++|++||.|| +.||+.|....+.+.++++++.  ++.++.+..+.         
T Consensus         4 vG~~aPdF~L~~~~G~~~~Lsd~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~   83 (160)
T d2cx4a1           4 LGEKAPDFTLPNQDFEPVNLYEVLKRGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEKANAEVLAISVDSPWCLKKFKD   83 (160)
T ss_dssp             TTSBCCCCEECCTTSCCEEHHHHHTTSSCEEEEECSCTTCHHHHHHHHHHHHTCTTTSTTCCEEEEEESSCHHHHHHHHH
T ss_pred             CCCCCcCeEeECCCCCEEehHHHhhCCCEEEEEecccccCCchhhhhhhhhcccccccccccccccccccchhhhhhhcc
Confidence            4555666665444444444443  36889999998 8999999999999999988886  47788887653         


Q ss_pred             ------------chhhhhhCCCc----------ceeEEEEE-eCCeEEEEEeCC------ChHHHHHHHHHHhhc
Q 032502           88 ------------LVEFSTSWDIK----------ATPTFFFL-KDGQQVDKLVGA------NKPELQKKVAAAVDS  133 (139)
Q Consensus        88 ------------~~~~~~~~~v~----------~~Pt~~~~-~~g~~~~~~~g~------~~~~l~~~i~~~~~~  133 (139)
                                  +..+.+.||+.          ..|+++++ ++|+++..+.+.      +.+++.+.+++++++
T Consensus        84 ~~~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~~flId~~G~I~~~~~~~~~~~~~~~~eil~~l~~l~~e  158 (160)
T d2cx4a1          84 ENRLAFNLLSDYNREVIKLYNVYHEDLKGLKMVAKRAVFIVKPDGTVAYKWVTDNPLNEPDYDEVVREANKIAGE  158 (160)
T ss_dssp             HHTCSSEEEECTTSHHHHHTTCEEEEETTEEEEECCEEEEECTTSBEEEEEECSSTTCCCCHHHHHHHHHHHHTT
T ss_pred             cceeeEEEeecCCcchHHHcCccccccccccccceeeEEEEcCCCEEEEEEEeCCCCCCCCHHHHHHHHHHHccc
Confidence                        23456778773          35665555 999999887643      355666666666553

>d2a4va1 c.47.1.10 (A:59-214) Peroxiredoxin dot5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin dot5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.44  E-value=1.5e-13  Score=86.26  Aligned_cols=100  Identities=16%  Similarity=0.091  Sum_probs=73.7

Q ss_pred             cccCCCceEEeechhHHHHHHHHHhh--CCCEEEEEEe-CCCChhhhhhhHhHHHHHHhCCC-cEEEEEeCCc-------
Q 032502           19 VEFAGGNVSLVTTKDIWDQKMSEASK--EGKIVIANFS-ATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVDE-------   87 (139)
Q Consensus        19 ~~~~~~~~~~i~~~~~~~~~~~~~~~--~~k~vlv~f~-~~~C~~C~~~~~~l~~~~~~~~~-v~~~~vd~~~-------   87 (139)
                      ...+|..+|++...+...+.+.+...  ++++++++|| +.||+.|....+.|.+.+.++.+ +.++.++.|.       
T Consensus         4 ~L~vG~~aP~f~L~~~~g~~~~l~~~~~k~~~vvlff~p~~~cp~C~~~~~~~~~~~~~~~~~~~~~~is~d~~~~~~~f   83 (156)
T d2a4va1           4 ELEIGDPIPDLSLLNEDNDSISLKKITENNRVVVFFVYPRASTPGSTRQASGFRDNYQELKEYAAVFGLSADSVTSQKKF   83 (156)
T ss_dssp             CCCTTCBCCSCEEECTTSCEEEHHHHHHHCSEEEEEECSSSSSHHHHHHHHHHHHHHHHHTTTCEEEEEESCCHHHHHHH
T ss_pred             cCCCCCCCCCeEEECCCCCEEeeHHHcCCccEEEEEecccccCcchhhhhHHHHHHHHHHhhccceeeeccchhhhHHhh
Confidence            34567777777766555555555443  5677877777 89999999999999999999864 6677787753       


Q ss_pred             --------------chhhhhhCCCccee------EEEEEeCCeEEEEEeCC
Q 032502           88 --------------LVEFSTSWDIKATP------TFFFLKDGQQVDKLVGA  118 (139)
Q Consensus        88 --------------~~~~~~~~~v~~~P------t~~~~~~g~~~~~~~g~  118 (139)
                                    +..+++.||+...|      +++++.+|+++.++.+.
T Consensus        84 ~~~~~l~f~~L~D~~~~v~~~ygv~~~~~~~~~r~~~i~~dg~i~~~~~~~  134 (156)
T d2a4va1          84 QSKQNLPYHLLSDPKREFIGLLGAKKTPLSGSIRSHFIFVDGKLKFKRVKI  134 (156)
T ss_dssp             HHHHTCSSEEEECTTCHHHHHHTCBSSSSSCBCCEEEEEETTEEEEEEESC
T ss_pred             hcccCccceeccchHHHHHHHcCCCccccCCeeEEEEEEECCeEEEEEEEe
Confidence                          33567788876555      56666899999998877

>d2bmxa1 c.47.1.10 (A:2-170) Alkyl hydroperoxide reductase AhpC {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.40  E-value=1.2e-13  Score=87.64  Aligned_cols=92  Identities=20%  Similarity=0.230  Sum_probs=70.1

Q ss_pred             HHHHhhCCCEEEEEEe-CCCChhhhhhhHhHHHHHHhCC--CcEEEEEeCCc-------------------------chh
Q 032502           39 MSEASKEGKIVIANFS-ATWCGPCRMIAPFFSELSEKYP--SLMFLLVDVDE-------------------------LVE   90 (139)
Q Consensus        39 ~~~~~~~~k~vlv~f~-~~~C~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~-------------------------~~~   90 (139)
                      +.+...+||++||+|| +.||+.|....+.+.++++++.  ++.++.+..+.                         +..
T Consensus        37 ~~l~d~~GK~vvl~f~p~~~~p~C~~~~~~~~~~~~~~~~~g~~vv~is~d~~~~~~~~~~~~~~~~~~~f~ll~D~~~~  116 (169)
T d2bmxa1          37 ITSDEHPGKWRVVFFWPKDFTFVCPTEIAAFSKLNDEFEDRDAQILGVSIDSEFAHFQWRAQHNDLKTLPFPMLSDIKRE  116 (169)
T ss_dssp             EETTSSTTCEEEEEECSCTTSCCCHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHHCTTGGGCCSCEEECTTSH
T ss_pred             eeHHHHCCCeEEEEEecCCCCccccccccccccccccccccCcceeeccccchhhhhhhcccccccccceEEEEeccHHH
Confidence            4455578999999999 9999999999999999998885  58888888753                         234


Q ss_pred             hhhhCCC-----cceeEEEEE-eCCeEEEEEeCC-----ChHHHHHHHHHH
Q 032502           91 FSTSWDI-----KATPTFFFL-KDGQQVDKLVGA-----NKPELQKKVAAA  130 (139)
Q Consensus        91 ~~~~~~v-----~~~Pt~~~~-~~g~~~~~~~g~-----~~~~l~~~i~~~  130 (139)
                      +++.||+     ...|+.+++ ++|++...+.+.     ..+++.+.|+++
T Consensus       117 v~~~ygv~~~~~~~~r~~fvID~~G~I~~~~~~~~~~~~~~~evl~~l~al  167 (169)
T d2bmxa1         117 LSQAAGVLNADGVADRVTFIVDPNNEIQFVSATAGSVGRNVDEVLRVLDAL  167 (169)
T ss_dssp             HHHHHTCBCTTSSBCEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHH
T ss_pred             HHHHcCCCccCCccceeEEEEcCCCEEEEEEEcCCCCCCCHHHHHHHHHHh
Confidence            6778887     567876666 899998776532     455666666654

>d1e2ya_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue)
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.37  E-value=2.7e-13  Score=85.88  Aligned_cols=110  Identities=16%  Similarity=0.158  Sum_probs=76.8

Q ss_pred             cCCCceEEee----chhHHHHHHHHHhhCCCEEEEEEe-CCCChhhhhhhHhHHHHHHhCC--CcEEEEEeCCcc-----
Q 032502           21 FAGGNVSLVT----TKDIWDQKMSEASKEGKIVIANFS-ATWCGPCRMIAPFFSELSEKYP--SLMFLLVDVDEL-----   88 (139)
Q Consensus        21 ~~~~~~~~i~----~~~~~~~~~~~~~~~~k~vlv~f~-~~~C~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~~-----   88 (139)
                      .+|.++|++.    ..+...+.++++..++|++||+|| +.||+.|....+.|.++++++.  ++.++.|+.+..     
T Consensus         4 kvG~~APdF~~~~~l~d~~g~~vsLsd~~GK~vVl~F~p~~~c~~C~~e~~~l~~~~~~~~~~~~~v~~is~d~~~~~~~   83 (167)
T d1e2ya_           4 KLNHPAPEFDDMALMPNGTFKKVSLSSYKGKYVVLFFYPMDFTFVCPTEIIQFSDDAKRFAEINTEVISCSCDSEYSHLQ   83 (167)
T ss_dssp             CTTSBCCCCEEEEECSSSCEEEEEGGGGTTSEEEEEECSCSSCSSCCHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHH
T ss_pred             cCCCCCCCCcccccccCCCCcEEeHHHHCCCeEEEEEcccccccccchhhHHHHHHHHHhhcCceEEEeecCCcHHhHHH
Confidence            3455666664    233334446666778999999999 9999999999999999988886  578888877642     


Q ss_pred             -----------------------hhhhhhCCCc------ceeE-EEEEeCCeEEEEEeCC-----ChHHHHHHHHHH
Q 032502           89 -----------------------VEFSTSWDIK------ATPT-FFFLKDGQQVDKLVGA-----NKPELQKKVAAA  130 (139)
Q Consensus        89 -----------------------~~~~~~~~v~------~~Pt-~~~~~~g~~~~~~~g~-----~~~~l~~~i~~~  130 (139)
                                             ..+.+.|++.      ..|+ |++.++|+++..+.+.     +.+++.+.|+.+
T Consensus        84 ~~~~~~~~~~~~~~~~~~l~d~~~~~~~~y~v~~~~~g~~~r~tfvID~~G~Ir~~~~~~~~~~~~~~evL~~l~al  160 (167)
T d1e2ya_          84 WTSVDRKKGGLGPMAIPMLADKTKAIARAYGVLDEDSGVAYRGVFIIDPNGKLRQIIINDMPIGRNVEEVIRLVEAL  160 (167)
T ss_dssp             HHHSCGGGTCCCCCSSCEEECTTCHHHHHHTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred             HHhhHHHhcccccccccccccchhHHHHHcCCCcccCCCceeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHHHHH
Confidence                                   2345567662      3455 5555899998876432     456777666654

>d1qxha_ c.47.1.10 (A:) Thiol peroxidase Tpx {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Escherichia coli [TaxId: 562]

Probab=99.32  E-value=1.1e-12  Score=82.74  Aligned_cols=98  Identities=15%  Similarity=0.144  Sum_probs=75.5

Q ss_pred             cCCCceEEeechhHHHHHHHHHhhCCCEEEEEEe-CCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCc------------
Q 032502           21 FAGGNVSLVTTKDIWDQKMSEASKEGKIVIANFS-ATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDE------------   87 (139)
Q Consensus        21 ~~~~~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~-~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~------------   87 (139)
                      ..|..+|++...+...+.+.++..++|++||.|| +.||+.|....+.|.+++.++.++.++.|..+.            
T Consensus        19 ~vG~~APdF~L~~~~g~~vsLsd~~GK~vvl~f~~~~~~p~C~~~~~~l~~~~~~~~~~~vv~Is~d~~~~~~~~~~~~~   98 (164)
T d1qxha_          19 QAGSKAQTFTLVAKDLSDVTLGQFAGKRKVLNIFPSIDTGVCAASVRKFNQLATEIDNTVVLCISADLPFAQSRFCGAEG   98 (164)
T ss_dssp             CTTSBCCCCEEECTTSCEEEGGGGTTSEEEEEECSCSCSSCCCHHHHHHHHHHHTSTTEEEEEEESSCHHHHTTCCSSTT
T ss_pred             CCCCCCCCeEEECCCCCEEeHHHhCCCeEEEEEecchhcccchHHHHHHHHHHHhhccceeeeEEcCCHHHHHHHHHHhC
Confidence            4677778777666666777888889999999998 779999999999999999999888888887753            


Q ss_pred             -----------chhhhhhCCCc---------ceeE-EEEEeCCeEEEEEeCC
Q 032502           88 -----------LVEFSTSWDIK---------ATPT-FFFLKDGQQVDKLVGA  118 (139)
Q Consensus        88 -----------~~~~~~~~~v~---------~~Pt-~~~~~~g~~~~~~~g~  118 (139)
                                 +..+.+.||+.         ..|+ +++.++|++++.....
T Consensus        99 ~~~~~~~~~d~~~~~~~~ygv~~~~~~~~g~~~ra~fvID~~G~I~y~~~~~  150 (164)
T d1qxha_          99 LNNVITLSTFRNAEFLQAYGVAIADGPLKGLAARAVVVIDENDNVIFSQLVD  150 (164)
T ss_dssp             CTTEEEEECTTCHHHHHHTTCBBCSSTTTTSBCCEEEEECTTSBEEEEEECS
T ss_pred             CCcceeeccccchhhHHhcCeEeecCcccCcccCEEEEEcCCCEEEEEEEcC
Confidence                       23456778763         1354 4555999999876544

>d1we0a1 c.47.1.10 (A:1-166) Alkyl hydroperoxide reductase AhpC {Amphibacillus xylanus [TaxId: 1449]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Amphibacillus xylanus [TaxId: 1449]

Probab=99.30  E-value=1.6e-12  Score=82.20  Aligned_cols=93  Identities=23%  Similarity=0.218  Sum_probs=69.3

Q ss_pred             HHHHhhCCCEEEEEEeC-CCChhhhhhhHhHHHHHHhCC--CcEEEEEeCCcc-------------------------hh
Q 032502           39 MSEASKEGKIVIANFSA-TWCGPCRMIAPFFSELSEKYP--SLMFLLVDVDEL-------------------------VE   90 (139)
Q Consensus        39 ~~~~~~~~k~vlv~f~~-~~C~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~~-------------------------~~   90 (139)
                      +.++..+||++||.||. .||+.|....+.|.++++++.  ++.++.|..|..                         ..
T Consensus        24 vslsd~~GK~vvl~F~p~~~~p~C~~e~~~~~~~~~~f~~~g~~vv~IS~D~~~~~~~~~~~~~~~~~~~fpll~D~~~~  103 (166)
T d1we0a1          24 VTEADLKGKWSIVVFYPADFSFVCPTELEDVQKEYAELKKLGVEVYSVSTDTHFVHKAWHENSPAVGSIEYIMIGDPSQT  103 (166)
T ss_dssp             EETTTTSSSEEEEEECSCTTCSSCTHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHHSCHHHHTCCSEEEECTTCH
T ss_pred             eeHHHhCCCeEEEEEecccCCcHHHHHHHHHHHHHHhhcccceEEEecccccHHHHHHHhhhhhhhcccccccccCcccH
Confidence            55566789999999995 599999999999999999985  688899888742                         23


Q ss_pred             hhhhCCCc------ceeE-EEEEeCCeEEEEEeCC-----ChHHHHHHHHHHh
Q 032502           91 FSTSWDIK------ATPT-FFFLKDGQQVDKLVGA-----NKPELQKKVAAAV  131 (139)
Q Consensus        91 ~~~~~~v~------~~Pt-~~~~~~g~~~~~~~g~-----~~~~l~~~i~~~~  131 (139)
                      +++.||+.      ..|+ |++.++|++.....+.     +.+++.+.|+.+-
T Consensus       104 v~~~ygv~~~~~~~~~r~tfvID~~G~I~~~~i~~~~~~r~~~eil~~lkal~  156 (166)
T d1we0a1         104 ISRQFDVLNEETGLADRGTFIIDPDGVIQAIEINADGIGRDASTLINKVKAAQ  156 (166)
T ss_dssp             HHHHTTCEETTTTEECEEEEEECTTSBEEEEEEECTTSCCCTTHHHHHHHHHH
T ss_pred             HHHHhCCCccccCcccceEEEECCCCcEEEEEEcCCCCCCCHHHHHHHHHhcc
Confidence            56778874      3444 5555999998876543     4566776666543

>d1xvwa1 c.47.1.10 (A:1-153) Putative peroxiredoxin Rv2238c/MT2298 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Putative peroxiredoxin Rv2238c/MT2298
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.30  E-value=2.1e-12  Score=80.47  Aligned_cols=109  Identities=17%  Similarity=0.154  Sum_probs=75.0

Q ss_pred             CCCceEEeechhHHHHHHHHHhhCC-CEEEEEEe-CCCChhhhhhhHhHHHHHHhCC--CcEEEEEeCCcc---------
Q 032502           22 AGGNVSLVTTKDIWDQKMSEASKEG-KIVIANFS-ATWCGPCRMIAPFFSELSEKYP--SLMFLLVDVDEL---------   88 (139)
Q Consensus        22 ~~~~~~~i~~~~~~~~~~~~~~~~~-k~vlv~f~-~~~C~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~~---------   88 (139)
                      +|..+|++...+...+.+.++...+ +++|+.|| +.||+.|....+.+.++++++.  ++.++.+..|..         
T Consensus         4 vG~~aPdF~l~d~~G~~~slsd~~g~~~vvl~~~~~~~cp~C~~e~~~l~~~~~~~~~~~~~vi~vs~d~~~~~~~~~~~   83 (153)
T d1xvwa1           4 VGATAPDFTLRDQNQQLVTLRGYRGAKNVLLVFFPLAFTGICQGELDQLRDHLPEFENDDSAALAISVGPPPTHKIWATQ   83 (153)
T ss_dssp             TTSBCCCCEEECTTSCEEEGGGGTTTCEEEEEECSCTTSSHHHHHHHHHHHTGGGTSSSSEEEEEEESCCHHHHHHHHHH
T ss_pred             CcCCCcCeEEECCCCCEEeHHHHcCCCcEEEEecccccccchhhhhhhhhhhhhhhcccccccccccchhhhHHHHHhhh
Confidence            4566677666555555666666666 45555554 8999999999999999988886  588888887642         


Q ss_pred             --------------hhhhhhCCCc----cee---EEEEEeCCeEEEEEeCC-----ChHHHHHHHHHH
Q 032502           89 --------------VEFSTSWDIK----ATP---TFFFLKDGQQVDKLVGA-----NKPELQKKVAAA  130 (139)
Q Consensus        89 --------------~~~~~~~~v~----~~P---t~~~~~~g~~~~~~~g~-----~~~~l~~~i~~~  130 (139)
                                    ..+.+.||+.    ++|   +|++.++|++.....+.     ..+++.+.|..+
T Consensus        84 ~~~~~~~l~~~~~~~~~~~~ygv~~~~~g~~~r~tfvID~~G~I~~~~~~~~~~~~~~~~~~~~L~aL  151 (153)
T d1xvwa1          84 SGFTFPLLSDFWPHGAVSQAYGVFNEQAGIANRGTFVVDRSGIIRFAEMKQPGEVRDQRLWTDALAAL  151 (153)
T ss_dssp             HTCCSCEEECTTTTTHHHHHTTCEETTTTEECSEEEEECTTSBEEEEEECCTTCCCCHHHHHHHHHHT
T ss_pred             hccceeEEecccccchhHHHhhhhhhccCceeeeEEEECCCCEEEEEEEeCCCcccCHHHHHHHHHhh
Confidence                          2456778874    233   45555999998776532     456666666554

>d1psqa_ c.47.1.10 (A:) Probable thiol peroxidase PsaD {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Probable thiol peroxidase PsaD
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.28  E-value=4.1e-12  Score=80.07  Aligned_cols=100  Identities=16%  Similarity=0.053  Sum_probs=76.6

Q ss_pred             cccCCCceEEeechhHHHHHHHHHhhCCCEEEEEEe-CCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcc---------
Q 032502           19 VEFAGGNVSLVTTKDIWDQKMSEASKEGKIVIANFS-ATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDEL---------   88 (139)
Q Consensus        19 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~-~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~---------   88 (139)
                      ....|..+|++...+...+.+.++..++|++||.|| +.||+.|....+.+.+...++.++.++.|..+..         
T Consensus        15 ~l~vG~~aPdF~L~~~~g~~vsLsd~~gk~~vl~f~~~~~~p~C~~~~~~l~~~~~~~~~~~vv~Is~d~~~~~~~~~~~   94 (163)
T d1psqa_          15 QLQVGDKALDFSLTTTDLSKKSLADFDGKKKVLSVVPSIDTGICSTQTRRFNEELAGLDNTVVLTVSMDLPFAQKRWCGA   94 (163)
T ss_dssp             CCCTTSBCCCCEEECTTSCEEEGGGGTTSEEEEEECSCTTSHHHHHHHHHHHHHTTTCTTEEEEEEESSCHHHHHHHHHH
T ss_pred             CCCCCCCCCCeEEECCCCCEEehHHhCCcEEEEEeccccccccchhhHHHHHHHHHhhcccceEEEEeccHHHHHHHHHH
Confidence            446788888888777667777888889999999999 7899999999999999988888888888887631         


Q ss_pred             --------------hhhhhhCCCcc----ee---EEEEEeCCeEEEEEeCC
Q 032502           89 --------------VEFSTSWDIKA----TP---TFFFLKDGQQVDKLVGA  118 (139)
Q Consensus        89 --------------~~~~~~~~v~~----~P---t~~~~~~g~~~~~~~g~  118 (139)
                                    ..+.+.||+..    .|   ++++.++|++++...+.
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~ygv~~~~~~~~~Ra~fvID~~G~I~y~~~~~  145 (163)
T d1psqa_          95 EGLDNAIMLSDYFDHSFGRDYALLINEWHLLARAVFVLDTDNTIRYVEYVD  145 (163)
T ss_dssp             HTCTTSEEEECTTTCHHHHHHTCBCTTTCSBCCEEEEECTTCBEEEEEECS
T ss_pred             cCCcceeeeccccchhHHHhheeecccccceeEEEEEECCCCEEEEEEEcC
Confidence                          23456677632    22   46666999998775433

>d1uula_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.24  E-value=5.4e-12  Score=81.58  Aligned_cols=95  Identities=18%  Similarity=0.156  Sum_probs=72.8

Q ss_pred             HHHHHHhhCCCEEEEEEe-CCCChhhhhhhHhHHHHHHhCC--CcEEEEEeCCc--------------------------
Q 032502           37 QKMSEASKEGKIVIANFS-ATWCGPCRMIAPFFSELSEKYP--SLMFLLVDVDE--------------------------   87 (139)
Q Consensus        37 ~~~~~~~~~~k~vlv~f~-~~~C~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~--------------------------   87 (139)
                      +.+.++...+|++||+|| +.||+.|......+.++++++.  ++.++.|..|.                          
T Consensus        24 ~~vsLsd~~GK~vVL~FyP~~~t~~C~~E~~~f~~~~~~f~~~g~~VlgIS~Ds~~s~~~~~~~~~~~~~~~~l~fplls  103 (194)
T d1uula_          24 KKVALTSYKGKWLVLFFYPMDFTFVCPTEICQFSDRVKEFSDIGCEVLACSMDSEYSHLAWTSIERKRGGLGQMNIPILA  103 (194)
T ss_dssp             EEEEGGGGTTSEEEEEECSCTTCSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSCEEE
T ss_pred             cEEehHHhCCCeEEEEEEeCCccccchhhhhHHHhhhhhhccCceEEEEEecCchhhhhhhhhhhhhhccccCCCcceee
Confidence            345566678999999999 9999999999999999998885  68899888763                          


Q ss_pred             --chhhhhhCCCc------cee-EEEEEeCCeEEEEEeCC-----ChHHHHHHHHHHh
Q 032502           88 --LVEFSTSWDIK------ATP-TFFFLKDGQQVDKLVGA-----NKPELQKKVAAAV  131 (139)
Q Consensus        88 --~~~~~~~~~v~------~~P-t~~~~~~g~~~~~~~g~-----~~~~l~~~i~~~~  131 (139)
                        +..+++.||+.      ..| ||++.++|++...+.+.     ..+++.+.|+.+.
T Consensus       104 D~~~~v~~~ygv~~~~~~~~~R~tfvID~~G~I~~~~~~~~~~~r~~~E~Lr~l~alQ  161 (194)
T d1uula_         104 DKTKCIMKSYGVLKEEDGVAYRGLFIIDPKQNLRQITVNDLPVGRDVDEALRLVKAFQ  161 (194)
T ss_dssp             CTTCHHHHHHTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHHH
T ss_pred             CCcchHHHHcCCeeccCCceEEEEEEECCCCeEEEEEEecCCCCcCHHHHHHHHHHhh
Confidence              23467788873      244 56666999998876432     6778888777754

>d1eeja1 c.47.1.9 (A:61-216) Disulfide bond isomerase, DsbC, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Disulfide bond isomerase, DsbC, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.24  E-value=1.2e-11  Score=77.30  Aligned_cols=87  Identities=16%  Similarity=0.270  Sum_probs=66.6

Q ss_pred             hCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCC-------------------------------------
Q 032502           44 KEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVD-------------------------------------   86 (139)
Q Consensus        44 ~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~-------------------------------------   86 (139)
                      ...|.+|+.|+-+.||+|+++.+.+.++.+..  +.++....-                                     
T Consensus        24 ~~ak~tIv~FsD~~CpyC~~~~~~l~~~~~~~--~~~~~~~~p~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~  101 (156)
T d1eeja1          24 PQEKHVITVFTDITCGYCHKLHEQMADYNALG--ITVRYLAFPRQGLDSDAEKEMKAIWCAKDKNKAFDDVMAGKSVAPA  101 (156)
T ss_dssp             TTCCEEEEEEECTTCHHHHHHHTTHHHHHHTT--EEEEEEECCTTCSSSHHHHHHHHHHTSSSHHHHHHHHHTTCCCCCC
T ss_pred             CCCCEEEEEEeCCCCHHHHHHHHHHHHhhccC--ceEEEEeccccccchhhHHHHHHHHHhhhhhhhhHHHHhccccchh
Confidence            34688999999999999999999999997653  444443331                                     


Q ss_pred             -------cchhhhhhCCCcceeEEEEEeCCeEEEEEeCC-ChHHHHHHHHHHhhccCC
Q 032502           87 -------ELVEFSTSWDIKATPTFFFLKDGQQVDKLVGA-NKPELQKKVAAAVDSVVP  136 (139)
Q Consensus        87 -------~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~i~~~~~~~~~  136 (139)
                             .+..+++.+||+++||++ +.||+.+   .|. +.+.|.++|++.+....+
T Consensus       102 ~~~~~i~~~~~la~~lgv~GTPt~~-~~nG~~v---~G~~~~e~l~~~i~~~~k~~~~  155 (156)
T d1eeja1         102 SCDVDIADHYALGVQLGVSGTPAVV-LSNGTLV---PGYQPPKEMKEFLDEHQKMTSG  155 (156)
T ss_dssp             CCSCCHHHHHHHHHHHTCCSSSEEE-CTTSCEE---ESCCCHHHHHHHHHHHHHHHHC
T ss_pred             hhcchHHHHHHHHHHcCCcCCCEEE-EeCCeEe---cCCCCHHHHHHHHHHHHHHhcC
Confidence                   134567889999999965 4678754   588 999999999998876544

>d2f8aa1 c.47.1.10 (A:12-195) Glutathione peroxidase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Glutathione peroxidase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=1.5e-10  Score=74.06  Aligned_cols=48  Identities=21%  Similarity=0.209  Sum_probs=41.7

Q ss_pred             HHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCC--CcEEEEEeCC
Q 032502           39 MSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP--SLMFLLVDVD   86 (139)
Q Consensus        39 ~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~--~v~~~~vd~~   86 (139)
                      +.+...+||++||.+||+||+.|....+.|++++++|.  ++.++.+.++
T Consensus        17 vsL~~ykGKvvLivN~AS~Cg~t~~~y~~L~~L~~ky~~~g~~Il~fP~n   66 (184)
T d2f8aa1          17 VSLGSLRGKVLLIENVASLGGTTVRDYTQMNELQRRLGPRGLVVLGFPCN   66 (184)
T ss_dssp             EEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECC
T ss_pred             ecHHHcCCCEEEEEEecccCCcchhhhHHHHHhhhhhcccceeEEEeecc
Confidence            45666889999999999999999999999999999986  5777777665

>d1zyea1 c.47.1.10 (A:6-163) Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin-3 (AOP-1, SP-22)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.15  E-value=1e-10  Score=73.17  Aligned_cols=92  Identities=18%  Similarity=0.186  Sum_probs=67.4

Q ss_pred             HHHHhhCCCEEEEEEe-CCCChhhhhhhHhHHHHHHhCC--CcEEEEEeCCcc---------------------------
Q 032502           39 MSEASKEGKIVIANFS-ATWCGPCRMIAPFFSELSEKYP--SLMFLLVDVDEL---------------------------   88 (139)
Q Consensus        39 ~~~~~~~~k~vlv~f~-~~~C~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~~---------------------------   88 (139)
                      +++....||++||+|| +.||+.|....+.+++++.++.  ++.++.|..|..                           
T Consensus        19 vsL~d~~Gk~vVL~Fyp~~~tp~C~~e~~~~~~~~~~~~~~~~~vigIS~d~~~~~~~~~~~~~~~~~~~~~~f~llsD~   98 (158)
T d1zyea1          19 ISLDDFKGKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDVNCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDL   98 (158)
T ss_dssp             EEGGGGTTSEEEEEECSCTTCSSSHHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSEEEECT
T ss_pred             EeHHHhCCCeEEEEEeehhcCCccccchhhHHHhHHHhhcCCceEEeccCcCHHHHHHHHhhhHhhcccccccccccccc
Confidence            3444567899999999 9999999999999999988875  588888877632                           


Q ss_pred             -hhhhhhCCCcc------ee-EEEEEeCCeEEEEEeCC-----ChHHHHHHHHHH
Q 032502           89 -VEFSTSWDIKA------TP-TFFFLKDGQQVDKLVGA-----NKPELQKKVAAA  130 (139)
Q Consensus        89 -~~~~~~~~v~~------~P-t~~~~~~g~~~~~~~g~-----~~~~l~~~i~~~  130 (139)
                       ..+++.||+..      .| ||++.++|++...+.+.     +.+++.+.|+.+
T Consensus        99 ~~~~~~~ygv~~~~~g~~~R~tfvID~~G~I~~~~i~~~~~~~~~~EiL~~lkal  153 (158)
T d1zyea1          99 TKQISRDYGVLLEGPGLALRGLFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAF  153 (158)
T ss_dssp             TSHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHH
T ss_pred             ccHHHHHHHhccccCCccccEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence             23566787753      33 56666999998876543     456666766644

>d1zofa1 c.47.1.10 (A:1-170) Thioredoxin reductase TsaA {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin reductase TsaA
species: Helicobacter pylori [TaxId: 210]

Probab=99.15  E-value=1.9e-11  Score=77.48  Aligned_cols=94  Identities=18%  Similarity=0.219  Sum_probs=66.7

Q ss_pred             HHHHhhCC-CEEEEEEe-CCCChhhhhhhHhHHHHHHhCC--CcEEEEEeCCcc--------------------------
Q 032502           39 MSEASKEG-KIVIANFS-ATWCGPCRMIAPFFSELSEKYP--SLMFLLVDVDEL--------------------------   88 (139)
Q Consensus        39 ~~~~~~~~-k~vlv~f~-~~~C~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~~--------------------------   88 (139)
                      +.++...+ +++|++|| +.||+.|....+.+++..+++.  ++.++.|..+..                          
T Consensus        25 ~~Lsd~~gk~~vvl~FyP~~~tp~C~~e~~~~~~~~~~f~~~g~~Vvgis~d~~~~~~~~~~~~~~~~~~~~~~~~~l~D  104 (170)
T d1zofa1          25 FELSKNLGKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEKGFNVIGVSIDSEQVHFAWKNTPVEKGGIGQVSFPMVAD  104 (170)
T ss_dssp             EETTTSCCSSEEEEEECSCTTCSSCCTHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCCCSSCEEEC
T ss_pred             EEeHHHcCCCEEEEEEEccccCCcCHHHHHHHHHhHHhhccCCeeEecccccchhhHHHHHhhhhhcccccCcccccccc
Confidence            44455555 48999999 9999999999999998888875  688888888632                          


Q ss_pred             --hhhhhhCCCc-----ceeE-EEEEeCCeEEEEEeCC-----ChHHHHHHHHHHhh
Q 032502           89 --VEFSTSWDIK-----ATPT-FFFLKDGQQVDKLVGA-----NKPELQKKVAAAVD  132 (139)
Q Consensus        89 --~~~~~~~~v~-----~~Pt-~~~~~~g~~~~~~~g~-----~~~~l~~~i~~~~~  132 (139)
                        ..+.+.||+.     ..|+ +++.++|++.....+.     +.+++.+.|+.+..
T Consensus       105 ~~~~v~~~ygv~~~~~~~~r~tfvID~~G~I~~~~~~~~~~~~~~~eiL~~l~aLq~  161 (170)
T d1zofa1         105 ITKSISRDYDVLFEEAIALRGAFLIDKNMKVRHAVINDLPLGRNADEMLRMVDALLH  161 (170)
T ss_dssp             TTSHHHHHTTCEETTTEECEEEEEEETTTEEEEEEEESSSCCCHHHHHHHHHHHHHH
T ss_pred             cccHHHHHcCCCccccceeEEEEEEcCCCeEEEEEEeCCCCCCCHHHHHHHHHHhhh
Confidence              2456778873     3454 5555999998765432     45566666665543

>d2zcta1 c.47.1.10 (A:6-242) Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin
species: Aeropyrum pernix [TaxId: 56636]

Probab=99.14  E-value=1.2e-10  Score=77.10  Aligned_cols=88  Identities=16%  Similarity=0.152  Sum_probs=68.6

Q ss_pred             hCCCEEEEEEe-CCCChhhhhhhHhHHHHHHhCC--CcEEEEEeCCc---------------------------chhhhh
Q 032502           44 KEGKIVIANFS-ATWCGPCRMIAPFFSELSEKYP--SLMFLLVDVDE---------------------------LVEFST   93 (139)
Q Consensus        44 ~~~k~vlv~f~-~~~C~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~---------------------------~~~~~~   93 (139)
                      .+++.+|++|| +.||+.|....+.+.++++++.  ++.++.+.+|.                           +..+++
T Consensus        27 ~kGk~vVLff~P~dftpvCttEl~~~~~~~~ef~~~g~~vigiS~Ds~~sh~~w~~~~~~~~~~~l~fpllsD~~~~vak  106 (237)
T d2zcta1          27 SQGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRLGVDLIGLSVDSVFSHIKWKEWIERHIGVRIPFPIIADPQGTVAR  106 (237)
T ss_dssp             TTTCEEEEEEESCSSCHHHHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHHHHHHHHCCCCCSCEEECGGGHHHH
T ss_pred             cCCCEEEEEEECCCCCccCHHHHHHHHhhhhhhccCCcceeeccCCcHHHHHHHhhhhhhhcccccccccccCcchHHHH
Confidence            36889999999 9999999999999998888875  68899888763                           334677


Q ss_pred             hCCC-------cceeEEEEE-eCCeEEEEEeC-----CChHHHHHHHHHHh
Q 032502           94 SWDI-------KATPTFFFL-KDGQQVDKLVG-----ANKPELQKKVAAAV  131 (139)
Q Consensus        94 ~~~v-------~~~Pt~~~~-~~g~~~~~~~g-----~~~~~l~~~i~~~~  131 (139)
                      .||+       ...|+++++ .+|++...+.+     .+.+++.+.|+.+-
T Consensus       107 ~yGv~~~~~~~~~~RatFIIDpdG~Ir~~~~~~~~~gR~~dEiLr~l~aLQ  157 (237)
T d2zcta1         107 RLGLLHAESATHTVRGVFIVDARGVIRTMLYYPMELGRLVDEILRIVKALK  157 (237)
T ss_dssp             HTTCC----CCTTCCEEEEECTTSBEEEEEECCTTBCCCHHHHHHHHHHHH
T ss_pred             HcCCccccccccceeeeEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHHh
Confidence            8887       356766555 99998876543     26778888877664

>d1q98a_ c.47.1.10 (A:) Thiol peroxidase Tpx {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Haemophilus influenzae [TaxId: 727]

Probab=99.14  E-value=2.5e-11  Score=76.47  Aligned_cols=98  Identities=10%  Similarity=0.046  Sum_probs=73.6

Q ss_pred             cCCCceEEeechhHHHHHHHHHhhCCCEEEEEEe-CCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCc------------
Q 032502           21 FAGGNVSLVTTKDIWDQKMSEASKEGKIVIANFS-ATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDE------------   87 (139)
Q Consensus        21 ~~~~~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~-~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~------------   87 (139)
                      ..|..+|++.-.+.-.+.+.++...+|++||+|| +.||+.|....+.|++...++.++.++.|..|.            
T Consensus        17 ~vG~~APdF~L~d~~g~~v~Lsd~~Gk~vVL~f~p~~~tp~C~~e~~~~~~~~~~~~~~~vi~iS~d~~~~~~~~~~~~~   96 (164)
T d1q98a_          17 QVGEIVENFILVGNDLADVALNDFASKRKVLNIFPSIDTGVCATSVRKFNQQAAKLSNTIVLCISADLPFAQARFCGAEG   96 (164)
T ss_dssp             CTTCBCCCCEEECTTSCEEEGGGGTTSEEEEEECSCSCSSCCCHHHHHHHHHHHHSTTEEEEEEESSCHHHHTTCTTTTT
T ss_pred             CCCCCCCCcEEECCCCCEEeehhhCCcEEEEEecCccccCcccHHHHHHHHHHHHhccceEEeecCCcHHHHHHHHHHhC
Confidence            4677777777666556667777788999999999 678999999999999999999999899888863            


Q ss_pred             -----------chhhhhhCCCc-------ce--eEE-EEEeCCeEEEEEeCC
Q 032502           88 -----------LVEFSTSWDIK-------AT--PTF-FFLKDGQQVDKLVGA  118 (139)
Q Consensus        88 -----------~~~~~~~~~v~-------~~--Pt~-~~~~~g~~~~~~~g~  118 (139)
                                 ...+.+.|++.       ++  |++ ++.++|++++.+...
T Consensus        97 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~Ra~fvID~~G~I~y~~~~~  148 (164)
T d1q98a_          97 IENAKTVSTFRNHALHSQLGVDIQTGPLAGLTSRAVIVLDEQNNVLHSQLVE  148 (164)
T ss_dssp             CTTEEEEECTTCTHHHHHTTCEECSSTTTTSBCCEEEEECTTSBEEEEEECS
T ss_pred             CccccccccccchhHHHhhceecccCccccCcccEEEEECCCCEEEEEEECC
Confidence                       12345556642       22  444 455899999876544

>d1beda_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Vibrio cholerae [TaxId: 666]

Probab=99.14  E-value=1.5e-10  Score=73.39  Aligned_cols=87  Identities=14%  Similarity=0.242  Sum_probs=67.5

Q ss_pred             CCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCC-cEEEEEeCC--c----------------------------------
Q 032502           45 EGKIVIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVD--E----------------------------------   87 (139)
Q Consensus        45 ~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~-v~~~~vd~~--~----------------------------------   87 (139)
                      ++++.||.|+...||+|+.+.+.+..+.+++++ +.+......  .                                  
T Consensus        17 ~~~~~Ivef~d~~Cp~C~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (181)
T d1beda_          17 SSSPVVSEFFSFYCPHCNTFEPIIAQLKQQLPEGAKFQKNHVSFMGGNMGQAMSKAYATMIALEVEDKMVPVMFNRIHTL   96 (181)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHTSCTTCEEEEEECSSSSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS
T ss_pred             CCCCEEEEEECCCCccchhhhhhhhhHhhhcccccceeEEeccccccccHHHHHHHHHHHHHhcchhhHHHHHHHHHHHh
Confidence            467889999999999999999999999999874 555444331  0                                  


Q ss_pred             ---------------------------------------chhhhhhCCCcceeEEEEEeCCeEEEEEeCC-ChHHHHHHH
Q 032502           88 ---------------------------------------LVEFSTSWDIKATPTFFFLKDGQQVDKLVGA-NKPELQKKV  127 (139)
Q Consensus        88 ---------------------------------------~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~i  127 (139)
                                                             +..+++++||+++||+++  ||+.+....+. +.+.+.+.|
T Consensus        97 ~~~~~~~~~l~~~~~~~gvd~~~~~~~~~~~~~~~~v~~~~~~~~~~gi~gTPt~~I--nGk~~v~~~~~~~~~~l~~~i  174 (181)
T d1beda_          97 RKPPKDEQELRQIFLDEGIDAAKFDAAYNGFAVDSMVRRFDKQFQDSGLTGVPAVVV--NNRYLVQGQSVKSLDEYFDLV  174 (181)
T ss_dssp             CCCCCSHHHHHHHHHTTTCCHHHHHHHHTSHHHHHHHHHHHHHHHHHTCCSSSEEEE--TTTEEECGGGCCSHHHHHHHH
T ss_pred             ccccchHHHHHHHHHHhcCCHHHHHHHHhChHHHHHHHHHHHHHHHhCCccccEEEE--CCEEeeCCCCCCCHHHHHHHH
Confidence                                                   122466789999999999  89865554566 889999999


Q ss_pred             HHHhhc
Q 032502          128 AAAVDS  133 (139)
Q Consensus       128 ~~~~~~  133 (139)
                      +.++.+
T Consensus       175 ~~L~~~  180 (181)
T d1beda_         175 NYLLTL  180 (181)
T ss_dssp             HHHHHC
T ss_pred             HHHHhC
Confidence            988764

>d1xvqa_ c.47.1.10 (A:) Thiol peroxidase Tpx {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.13  E-value=5.3e-11  Score=75.04  Aligned_cols=95  Identities=17%  Similarity=0.102  Sum_probs=70.4

Q ss_pred             cCCCceEEeechhHHHHHHHHHhhCCCEEEEEEe-CCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcc-----------
Q 032502           21 FAGGNVSLVTTKDIWDQKMSEASKEGKIVIANFS-ATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDEL-----------   88 (139)
Q Consensus        21 ~~~~~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~-~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~-----------   88 (139)
                      .+|..+|++...+...+.+.++..++|++|+.|| +.||+.|....+.+.+..++. ++.++.|..+..           
T Consensus        18 ~iG~~aP~F~L~~~~g~~v~L~d~~Gk~vvl~f~~~~~~p~C~~e~~~l~~~~~~~-g~~vv~Is~d~~~~~~~~~~~~~   96 (166)
T d1xvqa_          18 AVGSPAPAFTLTGGDLGVISSDQFRGKSVLLNIFPSVDTPVCATSVRTFDERAAAS-GATVLCVSKDLPFAQKRFCGAEG   96 (166)
T ss_dssp             CTTSBCCCCEEECTTSCEEEGGGGTTSCEEEEECSCCCSSCCCHHHHHHHHHHHHT-TCEEEEEESSCHHHHTTCC----
T ss_pred             CCcCCCCCeEEECCCCCEEehHHhCCcEEEEEeeecccccccHHHHHHHhhhcccc-cccccccccchHHHHHHHHHHhC
Confidence            5677888888776666777888889999999999 669999999999998877775 678888887642           


Q ss_pred             -----------hhhhhhCCCc---------ceeE-EEEEeCCeEEEEEe
Q 032502           89 -----------VEFSTSWDIK---------ATPT-FFFLKDGQQVDKLV  116 (139)
Q Consensus        89 -----------~~~~~~~~v~---------~~Pt-~~~~~~g~~~~~~~  116 (139)
                                 ..+.+.|++.         ..|+ |++.++|++++...
T Consensus        97 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~ra~fvID~~G~I~y~~~  145 (166)
T d1xvqa_          97 TENVMPASAFRDSFGEDYGVTIADGPMAGLLARAIVVIGADGNVAYTEL  145 (166)
T ss_dssp             --CEEEEECTTSSHHHHTTCBBCSSTTTTSBCSEEEEECTTSBEEEEEE
T ss_pred             CcccccccchhHHHHHHhCeeeccCcccCceeeEEEEEeCCCEEEEEEE
Confidence                       2234556543         1344 55559999997654

>d1t3ba1 c.47.1.9 (A:61-210) Disulfide bond isomerase, DsbC, C-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Disulfide bond isomerase, DsbC, C-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=99.12  E-value=4.8e-11  Score=74.07  Aligned_cols=82  Identities=17%  Similarity=0.340  Sum_probs=62.5

Q ss_pred             hCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCC-------------------------------------
Q 032502           44 KEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVD-------------------------------------   86 (139)
Q Consensus        44 ~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~-------------------------------------   86 (139)
                      ...+.+|+.|+-+.||+|+++.+.+..+.+....+.++.....                                     
T Consensus        24 ~~ak~~I~~FsD~~CPyC~~~~~~l~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~~~~~~~~~~~~~~  103 (150)
T d1t3ba1          24 KNEKHVVTVFMDITCHYCHLLHQQLKEYNDLGITVRYLAFPRAGMNNQTAKQMEAIWTAKDPVFALNEAEKGNLPKEVKT  103 (150)
T ss_dssp             TTCSEEEEEEECTTCHHHHHHHTTHHHHHHTTEEEEEEECCSSTTCSHHHHHHHHHHHSSSHHHHHHHHHTTCCCSSCCC
T ss_pred             CCCCEEEEEEECCCCHHHHHHhHHHHHHhccCceEEEEEecccccchhHHHHHHHHHHhhhHHHhhHhHhhhccccchhh
Confidence            3467889999999999999999999999877544444433331                                     


Q ss_pred             -----cchhhhhhCCCcceeEEEEEeCCeEEEEEeCC-ChHHHHHHHHH
Q 032502           87 -----ELVEFSTSWDIKATPTFFFLKDGQQVDKLVGA-NKPELQKKVAA  129 (139)
Q Consensus        87 -----~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~i~~  129 (139)
                           .+..+++.+||+++||+++ .||+.   ..|. +.+.|.+.|++
T Consensus       104 ~~~i~~~~~la~~lGv~GTPt~~~-~nG~~---i~G~~~~~~l~~~l~~  148 (150)
T d1t3ba1         104 PNIVKKHYELGIQFGVRGTPSIVT-STGEL---IGGYLKPADLLRALEE  148 (150)
T ss_dssp             SSHHHHHHHHHHHHTCCSSCEEEC-TTSCC---CCSCCCHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHhcCcCCCCEEEE-cCCcE---ecCCCCHHHHHHHHHh
Confidence                 1345688899999998775 56764   4688 89999998875

>d1xzoa1 c.47.1.10 (A:3-174) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.11  E-value=1.2e-10  Score=73.78  Aligned_cols=65  Identities=22%  Similarity=0.304  Sum_probs=52.0

Q ss_pred             CCCceEEeechhHHHHHHHHHhhCCCEEEEEEeCCCCh-hhhhhhHhHHHHHHhC----CCcEEEEEeCC
Q 032502           22 AGGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCG-PCRMIAPFFSELSEKY----PSLMFLLVDVD   86 (139)
Q Consensus        22 ~~~~~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~-~C~~~~~~l~~~~~~~----~~v~~~~vd~~   86 (139)
                      .+.++|++...+...+.+++...+||++||+||.+||+ .|....+.+.++.+.+    .++.++.|.+|
T Consensus         7 ~~~~~p~F~l~d~~G~~vsl~d~~Gk~vvl~F~~t~Cp~~C~~~~~~l~~~~~~~~~~~~~v~~v~isiD   76 (172)
T d1xzoa1           7 LNYEVEPFTFQNQDGKNVSLESLKGEVWLADFIFTNCETICPPMTAHMTDLQKKLKAENIDVRIISFSVD   76 (172)
T ss_dssp             CCEECCCCEEECTTSCEEETGGGTTCCEEEEEECSCCSSCCCSHHHHHHHHHHHHHHTTCCCEEEEEESC
T ss_pred             CCCcCCCeEEEcCCCCEEcHHHhCCCEEEEEEecccccccccccchhhhhhhhhhccccccccccccccc
Confidence            44566777777777777888888999999999999997 7999999998877765    25888888765

>d1n8ja_ c.47.1.10 (A:) Alkyl hydroperoxide reductase AhpC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.11  E-value=1.1e-10  Score=74.77  Aligned_cols=93  Identities=18%  Similarity=0.154  Sum_probs=70.9

Q ss_pred             HHHHhhCCCEEEEEEe-CCCChhhhhhhHhHHHHHHhCC--CcEEEEEeCCc-------------------------chh
Q 032502           39 MSEASKEGKIVIANFS-ATWCGPCRMIAPFFSELSEKYP--SLMFLLVDVDE-------------------------LVE   90 (139)
Q Consensus        39 ~~~~~~~~k~vlv~f~-~~~C~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~-------------------------~~~   90 (139)
                      +.+...+||.+||+|| +.||+.|....+.+++.++++.  ++.++.|..|.                         +..
T Consensus        23 vsLsd~kGk~vVL~FyP~~~tp~C~~e~~~f~~~~~~f~~~~~~v~gIS~Ds~~sh~~f~~~~~~~~~~~fpllsD~~~~  102 (186)
T d1n8ja_          23 VTEKDTEGRWSVFFFYPADFTFVSPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGA  102 (186)
T ss_dssp             EEHHHHTTSEEEEEECSCTTCSHHHHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHHHCTTGGGCCSEEEECTTSH
T ss_pred             EeHHHhCCCeEEEEEEeccCCCccHHHHHHHHHhhhhcccccEEEEeccccCHHHHHHHhccccccccccccccccHHHH
Confidence            4455567999999999 8999999999999999998885  68888888864                         234


Q ss_pred             hhhhCCCc----ce--e-EEEEEeCCeEEEEEeC-----CChHHHHHHHHHHh
Q 032502           91 FSTSWDIK----AT--P-TFFFLKDGQQVDKLVG-----ANKPELQKKVAAAV  131 (139)
Q Consensus        91 ~~~~~~v~----~~--P-t~~~~~~g~~~~~~~g-----~~~~~l~~~i~~~~  131 (139)
                      +++.||+.    ++  | ||++.++|++...+.+     .+.+++.+.|+++.
T Consensus       103 v~~~yGv~~~~~g~~~r~tfiID~~G~Ir~~~v~~~~~~r~~~eiL~~lkaLQ  155 (186)
T d1n8ja_         103 LTRNFDNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQ  155 (186)
T ss_dssp             HHHHTTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHHH
T ss_pred             HHHHhCCCcccCCcceeeEEEECchheEEEEeecCCCcccCHHHHHHHHHHHH
Confidence            57778874    33  4 4555599998877543     26788888888765

>d1wp0a1 c.47.1.10 (A:138-297) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=3.9e-10  Score=69.91  Aligned_cols=97  Identities=14%  Similarity=0.296  Sum_probs=67.1

Q ss_pred             HHHHHHhhCCCEEEEEEeCCCCh-hhhhhhHhHHHHHHhCC------CcEEEEEeCCcc---------------------
Q 032502           37 QKMSEASKEGKIVIANFSATWCG-PCRMIAPFFSELSEKYP------SLMFLLVDVDEL---------------------   88 (139)
Q Consensus        37 ~~~~~~~~~~k~vlv~f~~~~C~-~C~~~~~~l~~~~~~~~------~v~~~~vd~~~~---------------------   88 (139)
                      +.++++..+||++||.||.+||+ .|..+.+.+.++.+.+.      .+.+..+..+..                     
T Consensus        11 ~~vsl~d~~GK~vll~F~~t~C~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (160)
T d1wp0a1          11 ERKTDKDYLGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPERDTKEAIANYVKEFSPKLVGL   90 (160)
T ss_dssp             CEEEGGGGTTSEEEEEEECTTCSSHHHHHHHHHHHHHHHHHHCTTSCCEEEEEEESCTTTCCHHHHHHHHHTTCTTCEEE
T ss_pred             CEEcHHHhCCCEEEEEEECCCCccccccchHHHHHHHHHhhcccccccccccccccCCCcccHHHHHHHHhhcCCCcccc
Confidence            34556667899999999999997 79888888877776542      244444443210                     


Q ss_pred             -------hhhhhhCCCcce---------------eEEEEE-eCCeEEEEEeCC-ChHHHHHHHHHHhhc
Q 032502           89 -------VEFSTSWDIKAT---------------PTFFFL-KDGQQVDKLVGA-NKPELQKKVAAAVDS  133 (139)
Q Consensus        89 -------~~~~~~~~v~~~---------------Pt~~~~-~~g~~~~~~~g~-~~~~l~~~i~~~~~~  133 (139)
                             ..+...|++...               ++++++ ++|+++.++.+. +++++.+.|.+++++
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~LId~~G~i~~~~~~~~~~~~i~~~I~~~lk~  159 (160)
T d1wp0a1          91 TGTREEVDQVARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGPDGEFLDYFGQNKRKGEIAASIATHMRP  159 (160)
T ss_dssp             ECCHHHHHHHHHHTTCCEEECCCCGGGCCCEEECCEEEEECTTSCEEEEEETTCCHHHHHHHHHHHHTT
T ss_pred             cCchHHhhHHhhhhheeeecccCCCCCCceEeccceEEEECCCCcEEEEECCCCCHHHHHHHHHHHHhc
Confidence                   123445554433               344444 999999998766 889999999998865

>d1v58a1 c.47.1.9 (A:62-230) Thiol:disulfide interchange protein DsbG, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Thiol:disulfide interchange protein DsbG, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.03  E-value=1.3e-09  Score=68.73  Aligned_cols=80  Identities=13%  Similarity=0.306  Sum_probs=60.7

Q ss_pred             CCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCC---------------------------------------
Q 032502           46 GKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVD---------------------------------------   86 (139)
Q Consensus        46 ~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~---------------------------------------   86 (139)
                      .+.+|+.|+.+.||+|+++.+.++++.+.. .+.++.+++.                                       
T Consensus        36 a~~tv~vF~D~~CP~C~~~~~~l~~l~~~~-~v~v~~~~~~~~~~~s~~~a~a~~~a~~~~~~~~~~~~~~~~~~~~~~~  114 (169)
T d1v58a1          36 APVIVYVFADPFCPYCKQFWQQARPWVDSG-KVQLRTLLVGVIKPESPATAAAILASKDPAKTWQQYEASGGKLKLNVPA  114 (169)
T ss_dssp             CSEEEEEEECTTCHHHHHHHHHHHHHHHTT-SEEEEEEECCCSSTTHHHHHHHHHHSSSHHHHHHHHHHTTTCCCCCCCS
T ss_pred             CCEEEEEEECCCCcchHHHHHHHHHHHhcc-ceeEEEEecccCCcchHHHHHHHHhhhCHHHHHHHHHHhhhcccccccc
Confidence            457789999999999999999999998765 5666666662                                       


Q ss_pred             -----------cchhhhhhCCCcceeEEEEE-eCCeEEEEEeCC-ChHHHHHHH
Q 032502           87 -----------ELVEFSTSWDIKATPTFFFL-KDGQQVDKLVGA-NKPELQKKV  127 (139)
Q Consensus        87 -----------~~~~~~~~~~v~~~Pt~~~~-~~g~~~~~~~g~-~~~~l~~~i  127 (139)
                                 .+..+++.+||.++|++++. ++|+ .....|. +.+.|.+.|
T Consensus       115 ~~~~~~~~~i~~n~~~a~~~gi~gTPt~i~~~~~g~-~~~~~G~~~~~~l~~il  167 (169)
T d1v58a1         115 NVSTEQMKVLSDNEKLMDDLGANVTPAIYYMSKENT-LQQAVGLPDQKTLNIIM  167 (169)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHTCCSSCEEEEEETTTE-EEEEESSCCHHHHHHHT
T ss_pred             hhhHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCC-EEEecCCCCHHHHHHHh
Confidence                       12345778999999999887 4554 5667888 777666544

>d1qmva_ c.47.1.10 (A:) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=7.5e-10  Score=71.47  Aligned_cols=112  Identities=19%  Similarity=0.122  Sum_probs=78.8

Q ss_pred             cCCCceEEeech---hHHHHHHHHHhhCCCEEEEEEe-CCCChhhhhhhHhHHHHHHhCC--CcEEEEEeCCc-------
Q 032502           21 FAGGNVSLVTTK---DIWDQKMSEASKEGKIVIANFS-ATWCGPCRMIAPFFSELSEKYP--SLMFLLVDVDE-------   87 (139)
Q Consensus        21 ~~~~~~~~i~~~---~~~~~~~~~~~~~~k~vlv~f~-~~~C~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~-------   87 (139)
                      .+|..+|++...   +.-...+.+....+|++||+|| ..||+.|......+.++.+++.  ++.++.|..|.       
T Consensus         6 ~VG~~AP~F~l~~~~d~~~~~v~L~d~~Gk~~vL~FyP~~~tp~C~~e~~~~~~~~~~f~~~g~~vigIS~D~~~~~~~~   85 (197)
T d1qmva_           6 RIGKPAPDFKATAVVDGAFKEVKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSNRAEDFRKLGCEVLGVSVDSQFTHLAW   85 (197)
T ss_dssp             CTTSBCCCCEEEEEETTEEEEEEGGGGTTSEEEEEECSCTTSSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHH
T ss_pred             cCCCcCCCCCCcceeCCCCcEEeHHHhCCCeEEEEEecccccccchhhhHHHHHHHHHhccCCcEEEEEecCCHHHHHhh
Confidence            355556665421   2112234455567999999999 9999999999999999998886  68888888863       


Q ss_pred             ---------------------chhhhhhCCCc----c--ee-EEEEEeCCeEEEEEeC-----CChHHHHHHHHHHhh
Q 032502           88 ---------------------LVEFSTSWDIK----A--TP-TFFFLKDGQQVDKLVG-----ANKPELQKKVAAAVD  132 (139)
Q Consensus        88 ---------------------~~~~~~~~~v~----~--~P-t~~~~~~g~~~~~~~g-----~~~~~l~~~i~~~~~  132 (139)
                                           +.++++.||+.    +  .| ||++.++|++.....+     ...+++.+.|+.+..
T Consensus        86 ~~~~~~~~~~~~~~fpll~D~~~~va~~ygv~~~~~g~~~R~tfiID~~g~Ir~~~~~~~~~~r~~~E~lr~l~alq~  163 (197)
T d1qmva_          86 INTPRKEGGLGPLNIPLLADVTRRLSEDYGVLKTDEGIAYRGLFIIDGKGVLRQITVNDLPVGRSVDEALRLVQAFQY  163 (197)
T ss_dssp             HTSCGGGTCCCSCSSCEEECTTCHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHHHH
T ss_pred             hcchhhhcCcCCCccceEeccchHHHHHhCCCcccCCeeeEEEEEECCCCcEEEEEecCCCcccCHHHHHHHHHhhcc
Confidence                                 23467788874    2  34 5566689999876443     267888888777653

>d1prxa_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: 1-Cys peroxiredoxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=2.4e-09  Score=70.11  Aligned_cols=109  Identities=11%  Similarity=0.080  Sum_probs=75.3

Q ss_pred             CCCceEEeechhHHHHHHHHHhhC-CCEEEEEEe-CCCChhhhhhhHhHHHHHHhCC--CcEEEEEeCCc----------
Q 032502           22 AGGNVSLVTTKDIWDQKMSEASKE-GKIVIANFS-ATWCGPCRMIAPFFSELSEKYP--SLMFLLVDVDE----------   87 (139)
Q Consensus        22 ~~~~~~~i~~~~~~~~~~~~~~~~-~k~vlv~f~-~~~C~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~----------   87 (139)
                      .|..+|++...+...+ +.+.... ++++|++|| +.||+.|......+.+...++.  ++.++.+..|.          
T Consensus         3 VGd~APdF~l~~~~G~-v~Lsd~~g~k~vVLfFyP~dftpvC~~El~~~~~~~~~f~~~g~~v~giS~Ds~~sh~~~~~~   81 (220)
T d1prxa_           3 LGDVAPNFEANTTVGR-IRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAKRNVKLIALSIDSVEDHLAWSKD   81 (220)
T ss_dssp             TTCBCCCCEEEETTEE-EEHHHHHTTSEEEEEEESCSSCHHHHHHHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHH
T ss_pred             CCCCCCCcEeecCCCC-EEeHHHcCCCeEEEEEECCCCCCcchhhHHHHHHHHHHhhcccceeeccccccccchhhhhhh
Confidence            4445555554333332 3343333 489999999 8899999999999999988886  58888887753          


Q ss_pred             ---------------------chhhhhhCCCc------------cee-EEEEEeCCeEEEEEeCC-----ChHHHHHHHH
Q 032502           88 ---------------------LVEFSTSWDIK------------ATP-TFFFLKDGQQVDKLVGA-----NKPELQKKVA  128 (139)
Q Consensus        88 ---------------------~~~~~~~~~v~------------~~P-t~~~~~~g~~~~~~~g~-----~~~~l~~~i~  128 (139)
                                           +..+++.||+.            ..+ ||++.++|++...+...     +.+++.+.|+
T Consensus        82 ~~~~~~~~~~~~l~fpllsD~~~~va~~ygv~~~~~~~~~~~~~~~RatFIID~~g~Ir~~~~~~~~~gR~~dEiLr~l~  161 (220)
T d1prxa_          82 INAYNSEEPTEKLPFPIIDDRNRELAILLGMLDPAEKDEKGMPVTARVVFVFGPDKKLKLSILYPATTGRNFDEILRVVI  161 (220)
T ss_dssp             HHHHTTSCCCSCCSSCEEECTTCHHHHHTTSSCSCTTCSSSCCTTCCEEEEECTTSBEEEEEECCTTBCCCHHHHHHHHH
T ss_pred             hhhccccccccCcccccccCcccHHHHHhCCccccccccccceeeeEEEEEEcCccceeEEEEecCCcccchHHHHHHHH
Confidence                                 23467788874            223 45565999998876543     6788888777


Q ss_pred             HHh
Q 032502          129 AAV  131 (139)
Q Consensus       129 ~~~  131 (139)
                      .+.
T Consensus       162 alq  164 (220)
T d1prxa_         162 SLQ  164 (220)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            764

>d1r7ha_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Corynebacterium ammoniagenes [TaxId: 1697]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Corynebacterium ammoniagenes [TaxId: 1697]

Probab=98.90  E-value=9.6e-09  Score=55.89  Aligned_cols=67  Identities=16%  Similarity=0.247  Sum_probs=51.2

Q ss_pred             EEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhh---hhhCCCcceeEEEEEeCCeEEEEEeCCChHHHHHH
Q 032502           50 IANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEF---STSWDIKATPTFFFLKDGQQVDKLVGANKPELQKK  126 (139)
Q Consensus        50 lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~---~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~l~~~  126 (139)
                      |+.|..++|++|......|++.     ++.|..+|++++++.   .+.+|..++|++++  +|+.   +.|++.+.|.+.
T Consensus         3 v~iYt~~~C~~C~~ak~~L~~~-----~i~~~~~~i~~~~~~~~~~~~~g~~tvP~i~i--~g~~---igGf~~d~l~~L   72 (74)
T d1r7ha_           3 ITLYTKPACVQCTATKKALDRA-----GLAYNTVDISLDDEARDYVMALGYVQAPVVEV--DGEH---WSGFRPERIKQL   72 (74)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT-----TCCCEEEETTTCHHHHHHHHHTTCBCCCEEEE--TTEE---EESCCHHHHHHH
T ss_pred             EEEEeCCCChhHHHHHHHHHHc-----CCceEEEEccCCHHHHHHHHHhCCCCcCEEEE--CCEE---EeCCCHhHHHHh
Confidence            5678899999999999988664     678888888876543   46678999998876  7764   347777776653

>d1z6ma1 c.47.1.13 (A:1-172) Hypothetical protein EF0770 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Hypothetical protein EF0770
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.85  E-value=3.8e-09  Score=66.26  Aligned_cols=79  Identities=15%  Similarity=0.198  Sum_probs=59.8

Q ss_pred             CCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCC---cEEEEEeCCc----------------------------------
Q 032502           45 EGKIVIANFSATWCGPCRMIAPFFSELSEKYPS---LMFLLVDVDE----------------------------------   87 (139)
Q Consensus        45 ~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~---v~~~~vd~~~----------------------------------   87 (139)
                      ..++.|+.|+...||+|+++.+.+.++.+++++   +.++......                                  
T Consensus        23 ~a~v~I~ef~d~~Cp~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (172)
T d1z6ma1          23 NAPVKMIEFINVRCPYCRKWFEESEELLAQSVKSGKVERIIKLFDKEKESLQRGNVMHHYIDYSAPEQALSALHKMFATQ  102 (172)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHHHHHHHHHHHHHTTSEEEEEEECCCCSTTTHHHHHHHTTCCTTCHHHHHHHHHHHHHTH
T ss_pred             CCCEEEEEEECCCCHhHHHHHHHHhhhhhhhccccceeeeeccccccchhhHHHHHHHHHHHHccchhHHHHHHHHHHhc
Confidence            356789999999999999999999999888752   5555444410                                  


Q ss_pred             --------------------------------chhhhhhCCCcceeEEEEEeCCeEEEEEeCC-ChHHHHHHHH
Q 032502           88 --------------------------------LVEFSTSWDIKATPTFFFLKDGQQVDKLVGA-NKPELQKKVA  128 (139)
Q Consensus        88 --------------------------------~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~i~  128 (139)
                                                      ....++++||.++||+++  ||+.   +.|. +.++|.++|+
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~a~~~gI~gTPt~~I--ng~~---~~g~~~~~~~~~~id  171 (172)
T d1z6ma1         103 DEWGNLTLEEVATYAEKNLGLKEQKDATLVSAVIAEANAAHIQFVPTIII--GEYI---FDESVTEEELRGYIE  171 (172)
T ss_dssp             HHHTTSCHHHHHHHHHHTSCCCCCCCHHHHHHHHHHHHHHTCCSSCEEEE--TTEE---ECTTCCHHHHHHHHT
T ss_pred             cccchHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHcCCCcCCEEEE--CCEE---ecCCCCHHHHHHHHc
Confidence                                            012355689999999988  8875   4577 8999988875

>d2h01a1 c.47.1.10 (A:2-171) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Plasmodium yoelii [TaxId: 5861]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin)
species: Plasmodium yoelii [TaxId: 5861]

Probab=98.84  E-value=7.5e-09  Score=65.22  Aligned_cols=91  Identities=19%  Similarity=0.188  Sum_probs=66.3

Q ss_pred             HHhhCC-CEEEEEEe-CCCChhhhhhhHhHHHHHHhCC--CcEEEEEeCCc----------------------------c
Q 032502           41 EASKEG-KIVIANFS-ATWCGPCRMIAPFFSELSEKYP--SLMFLLVDVDE----------------------------L   88 (139)
Q Consensus        41 ~~~~~~-k~vlv~f~-~~~C~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~----------------------------~   88 (139)
                      +....+ +++||+|| +.||+.|......+++.++++.  ++.++.|..|.                            .
T Consensus        21 L~d~~g~k~vVl~FyP~~~tp~Ct~e~~~f~~~~~~f~~~g~~vigIS~D~~~~~~~~~~~~~~~~~~~~~~f~llsD~~  100 (170)
T d2h01a1          21 LSDFIGKKYVLLYFYPLDFTFVCPSEIIALDKALDSFKERNVELLGCSVDSKFTHLAWKKTPLSQGGIGNIKHTLISDIS  100 (170)
T ss_dssp             GGGGTTTCEEEEEECSCSSCSSCCHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSEEEECTT
T ss_pred             hHHHCCCCeEEEEEECCCCCCccchhhHHHhhhhhhhhcCCeeEecccCCcHHHHHhHhhhhhhhccccccCCceeEcCc
Confidence            333444 78999999 8999999999999999888875  68899998863                            2


Q ss_pred             hhhhhhCCCc-----cee-EEEEEeCCeEEEEEeCC-----ChHHHHHHHHHHh
Q 032502           89 VEFSTSWDIK-----ATP-TFFFLKDGQQVDKLVGA-----NKPELQKKVAAAV  131 (139)
Q Consensus        89 ~~~~~~~~v~-----~~P-t~~~~~~g~~~~~~~g~-----~~~~l~~~i~~~~  131 (139)
                      ..+.+.||+.     ..+ +|++.++|++...+.+.     +.+++.+.|+++-
T Consensus       101 ~~~~~~ygv~~~~~~~~R~tfiId~~G~I~~~~~~~~~~~~~~~eil~~l~~lq  154 (170)
T d2h01a1         101 KSIARSYDVLFNESVALRAFVLIDKQGVVQHLLVNNLALGRSVDEILRLIDALQ  154 (170)
T ss_dssp             SHHHHHTTCEETTTEECCEEEEECTTSBEEEEEEGGGSSGGGHHHHHHHHHHHH
T ss_pred             cHHHHHhCCccccccceeeeEEEcCCCeEEEEEEecCCCCCCHHHHHHHHHHhh
Confidence            3457778873     223 45555999998877543     3456777776654

>d1a8la1 c.47.1.2 (A:1-119) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.81  E-value=5.8e-08  Score=57.37  Aligned_cols=92  Identities=22%  Similarity=0.333  Sum_probs=72.6

Q ss_pred             CCCEEEEEEeC-CCChhhhhhhHhHHHHHHhCCCcEEEEEeCCc--chhhhhhCCCcceeEEEEEeCCeEE-EEEeCC-C
Q 032502           45 EGKIVIANFSA-TWCGPCRMIAPFFSELSEKYPSLMFLLVDVDE--LVEFSTSWDIKATPTFFFLKDGQQV-DKLVGA-N  119 (139)
Q Consensus        45 ~~k~vlv~f~~-~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~--~~~~~~~~~v~~~Pt~~~~~~g~~~-~~~~g~-~  119 (139)
                      .+.+.++.|.. ..|+.|..+...+++++...+.+.+...+.+.  +.++++.|++...|++++..+|+.. -++.|. .
T Consensus        21 ~~pV~l~~~~~~~~~~~~~e~~~ll~ela~lSdki~~~~~~~~~~e~~~~~~~~~ver~Ps~~i~~~g~~~gIrF~GiP~  100 (119)
T d1a8la1          21 VNPVKLIVFVRKDHCQYCDQLKQLVQELSELTDKLSYEIVDFDTPEGKELAKRYRIDRAPATTITQDGKDFGVRYFGLPA  100 (119)
T ss_dssp             CSCEEEEEEECSSSCTTHHHHHHHHHHHHTTCTTEEEEEEETTSHHHHHHHHHTTCCSSSEEEEEETTBCCSEEEESCCC
T ss_pred             CCCEEEEEEecCCCchhHHHHHHHHHHHHhhCCCeEEEEeccCcchhhhHHHhhccccCceEEEecCCcccceEEEeccC
Confidence            34444555543 57999999999999999887778877777764  5788999999999999999877643 467788 8


Q ss_pred             hHHHHHHHHHHhhccCC
Q 032502          120 KPELQKKVAAAVDSVVP  136 (139)
Q Consensus       120 ~~~l~~~i~~~~~~~~~  136 (139)
                      ..+|..+|..++....+
T Consensus       101 GhEf~SlilaIl~vs~g  117 (119)
T d1a8la1         101 GHEFAAFLEDIVDVSRE  117 (119)
T ss_dssp             TTHHHHHHHHHHHHHHT
T ss_pred             chhHHHHHHHHHHhccC
Confidence            89999999998876544

>d1fvka_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Escherichia coli [TaxId: 562]

Probab=98.80  E-value=8.5e-09  Score=65.49  Aligned_cols=40  Identities=18%  Similarity=0.401  Sum_probs=29.5

Q ss_pred             CCEEEEEEeCCCChhhhhhhHhHH---HHHHhCC-CcEEEEEeC
Q 032502           46 GKIVIANFSATWCGPCRMIAPFFS---ELSEKYP-SLMFLLVDV   85 (139)
Q Consensus        46 ~k~vlv~f~~~~C~~C~~~~~~l~---~~~~~~~-~v~~~~vd~   85 (139)
                      ++++|+.|++-.||+|+.+.+.+.   ++....+ ++.+.....
T Consensus        18 ~~~~VvEffdy~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~   61 (188)
T d1fvka_          18 GAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPEGVKMTKYHV   61 (188)
T ss_dssp             TCCSEEEEECTTCHHHHHHHHTTCHHHHHHTTSCTTCCEEEEEC
T ss_pred             CCCEEEEEECCCChhhHHHHHHHHHHHHHhhccCCceEEEEEec
Confidence            567899999999999999998874   3444444 366666655

>d1h75a_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Escherichia coli [TaxId: 562]

Probab=98.76  E-value=1.7e-08  Score=55.22  Aligned_cols=65  Identities=14%  Similarity=0.243  Sum_probs=50.1

Q ss_pred             EEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhh---hhhCCCcceeEEEEEeCCeEEEEEeCCChHHHH
Q 032502           50 IANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEF---STSWDIKATPTFFFLKDGQQVDKLVGANKPELQ  124 (139)
Q Consensus        50 lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~---~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~l~  124 (139)
                      ++.|..+||++|..+...|.+.     ++.|..+|++++++.   .+..|..++|++++  +|+.   +.|+.++.|.
T Consensus         3 i~iYs~~~C~~C~~ak~~L~~~-----~i~y~~~~i~~~~~~~~~~~~~g~~tvP~i~i--~~~~---i~Gf~~d~i~   70 (76)
T d1h75a_           3 ITIYTRNDCVQCHATKRAMENR-----GFDFEMINVDRVPEAAEALRAQGFRQLPVVIA--GDLS---WSGFRPDMIN   70 (76)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT-----TCCCEEEETTTCHHHHHHHHHTTCCSSCEEEE--TTEE---EESCCHHHHG
T ss_pred             EEEEeCCCCccHHHHHHHHHhc-----CceeEEEeecCCHHHHHHHHhcCCCCCCEEEE--CCEE---EECCCHHHHH
Confidence            4668899999999999988664     788888999887654   34568999999887  6654   4477777664

>d1egoa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Escherichia coli [TaxId: 562]

Probab=98.73  E-value=1.9e-08  Score=56.14  Aligned_cols=75  Identities=17%  Similarity=0.322  Sum_probs=55.5

Q ss_pred             EEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcch----hhhhh--CCCcceeEEEEEeCCeEEEEEeCCChHHH
Q 032502           50 IANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELV----EFSTS--WDIKATPTFFFLKDGQQVDKLVGANKPEL  123 (139)
Q Consensus        50 lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~----~~~~~--~~v~~~Pt~~~~~~g~~~~~~~g~~~~~l  123 (139)
                      ++.|..++|++|.+....|.++...+.++.+..+|.+.++    .+.+.  .++..+|.+++  +|+.+.   |.  ++|
T Consensus         3 vviysk~~Cp~C~~aK~ll~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~tvPqIfi--~g~~IG---G~--~el   75 (85)
T d1egoa_           3 TVIFGRSGCPYCVRAKDLAEKLSNERDDFQYQYVDIRAEGITKEDLQQKAGKPVETVPQIFV--DQQHIG---GY--TDF   75 (85)
T ss_dssp             EEEECCTTSTHHHHHHHHHHHHHHHHSSCEEEEECHHHHTCCSHHHHHHTCCCSCCSCEEEE--TTEEEE---SS--HHH
T ss_pred             EEEEeCCCCHhHHHHHHHHHHcCCCCCCceEEEEecCCCHHHHHHHHHHhcCCCCCCCEEEE--CCEEEE---CH--HHH
Confidence            5668999999999999999999888888999888876554    23333  24578999877  886553   55  456


Q ss_pred             HHHHHHHh
Q 032502          124 QKKVAAAV  131 (139)
Q Consensus       124 ~~~i~~~~  131 (139)
                      .+++++-+
T Consensus        76 ~~~~~~~~   83 (85)
T d1egoa_          76 AAWVKENL   83 (85)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHhcC
Confidence            66666543

>d1iloa_ c.47.1.1 (A:) MTH985, a thioredoxin {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH985, a thioredoxin
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.69  E-value=4.7e-08  Score=53.14  Aligned_cols=71  Identities=20%  Similarity=0.293  Sum_probs=55.2

Q ss_pred             EEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhhhhhCCCcceeEEEEEeCCeEEEEEeCC--ChHHHHHHH
Q 032502           51 ANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGA--NKPELQKKV  127 (139)
Q Consensus        51 v~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~--~~~~l~~~i  127 (139)
                      +.++++.|+.|..+....++...+. ++..-....++-.++. +|||.++|.+++  ||+++..  |.  +.+++.++|
T Consensus         4 IkVlg~gC~~C~~~~~~v~~a~~e~-gi~a~v~kv~d~~ei~-~ygVmstPalvI--dg~vv~~--G~vPs~~ei~~~L   76 (77)
T d1iloa_           4 IQIYGTGCANCQMLEKNAREAVKEL-GIDAEFEKIKEMDQIL-EAGLTALPGLAV--DGELKIM--GRVASKEEIKKIL   76 (77)
T ss_dssp             EEEECSSSSTTHHHHHHHHHHHHHT-TCCEEEEEECSHHHHH-HHTCSSSSCEEE--TTEEEEC--SSCCCHHHHHHHC
T ss_pred             EEEeCCCCccHHHHHHHHHHHHHHc-CCceEEEEeCCHHHHH-HcCCcCCCEEEE--CCEEEEE--ecCCCHHHHHHHh
Confidence            4456899999999999999988887 4443344455666765 599999999999  8988665  64  888888775

>d1ttza_ c.47.1.1 (A:) Hypothetical protein XCC2852 {Xanthomonas campestris [TaxId: 339]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Hypothetical protein XCC2852
species: Xanthomonas campestris [TaxId: 339]

Probab=98.67  E-value=1e-07  Score=51.79  Aligned_cols=72  Identities=14%  Similarity=0.250  Sum_probs=54.4

Q ss_pred             EEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhhhhhCCCcceeEEEEEeCCeEEEEEeCCChHHHHHHHHH
Q 032502           50 IANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKVAA  129 (139)
Q Consensus        50 lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~l~~~i~~  129 (139)
                      |..|..++|+.|..+...+.+    ..++.+..+|+++++++..+|+.. +|.+.+ .++...  ..+++.++|.++|..
T Consensus         2 ltLyt~~~C~LCe~A~~~l~~----~~~~~~~~vdI~~d~~l~~~y~~~-IPVl~~-~~~~~l--~w~fd~~~l~~~L~~   73 (75)
T d1ttza_           2 LTLYQRDDCHLCDQAVEALAQ----ARAGAFFSVFIDDDAALESAYGLR-VPVLRD-PMGREL--DWPFDAPRLRAWLDA   73 (75)
T ss_dssp             EEEEECSSCHHHHHHHHHHHH----TTCCCEEEEECTTCHHHHHHHTTT-CSEEEC-TTCCEE--ESCCCHHHHHHHHHT
T ss_pred             EEEECCCCccHHHHHHHHHHh----ccCCcEEEEEccCCHHHHHHhCCe-eeEEEE-CCeeEE--cCccCHHHHHHHHhc
Confidence            567899999999988765543    236788999999999999999976 897654 344432  235699999998864

>d2b7ka1 c.47.1.10 (A:111-279) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.64  E-value=2.2e-08  Score=61.89  Aligned_cols=106  Identities=19%  Similarity=0.270  Sum_probs=63.6

Q ss_pred             eechhHHHHHHHHHhhCCCEEEEEEeCCCCh-hhhhhhHhHHHHHHhCC-----CcEEEEEeCCcch-------------
Q 032502           29 VTTKDIWDQKMSEASKEGKIVIANFSATWCG-PCRMIAPFFSELSEKYP-----SLMFLLVDVDELV-------------   89 (139)
Q Consensus        29 i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~-~C~~~~~~l~~~~~~~~-----~v~~~~vd~~~~~-------------   89 (139)
                      ++..+...+.+.++..++|++||.||..||+ .|..+...+..+...+.     .+.+..+..+...             
T Consensus         9 F~l~d~~G~~vsl~~~~GK~vli~f~~t~c~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (169)
T d2b7ka1           9 FHLEDMYGNEFTEKNLLGKFSIIYFGFSNCPDICPDELDKLGLWLNTLSSKYGITLQPLFITCDPARDSPAVLKEYLSDF   88 (169)
T ss_dssp             CEEEETTSCEEEGGGGTTSCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHCCCCEEEEEESCTTTCCHHHHHHHHTTS
T ss_pred             eEEEeCCCCEECHHHHCCCEEEEEEeccccCCcccchhhhhhhhhhhccccccccceeeeeccccccCchhhhhhhhccc
Confidence            4444455566777788999999999999996 55555555554443332     2444444332110             


Q ss_pred             ---------------hhhh----------------hCCCcceeEEEEE-eCCeEEEEEeCC-ChHHHHHHHHHHhhcc
Q 032502           90 ---------------EFST----------------SWDIKATPTFFFL-KDGQQVDKLVGA-NKPELQKKVAAAVDSV  134 (139)
Q Consensus        90 ---------------~~~~----------------~~~v~~~Pt~~~~-~~g~~~~~~~g~-~~~~l~~~i~~~~~~~  134 (139)
                                     ....                .+.+...|+++++ ++|+++.++.+. +.+.+.+.|.+.++..
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~fLID~~G~vv~~~~~~~~~~~~~~~I~e~ik~l  166 (169)
T d2b7ka1          89 HPSILGLTGTFDEVKNACKKYRVYFSTPPNVKPGQDYLVDHSIFFYLMDPEGQFVDALGRNYDEKTGVDKIVEHVKSY  166 (169)
T ss_dssp             CTTCEEEECCHHHHHHHHHHTTC--------------CTTTCCCEEEECTTSCEEEEECTTCCTTHHHHHHHHHHHHC
T ss_pred             cccccccccchhhhhhhhhhhheeeeecccCCcccCceeeccceEEEECCCCeEEEEECCCCCHHHHHHHHHHHHHHH
Confidence                           0111                1234456765555 999999998766 6776666666665543

>d1ktea_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.60  E-value=2.3e-08  Score=58.01  Aligned_cols=67  Identities=19%  Similarity=0.298  Sum_probs=48.8

Q ss_pred             hhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchh-----hhhhCCCcceeEEEEEeCCeEEE
Q 032502           43 SKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVE-----FSTSWDIKATPTFFFLKDGQQVD  113 (139)
Q Consensus        43 ~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~-----~~~~~~v~~~Pt~~~~~~g~~~~  113 (139)
                      ..+++  |+.|..+|||+|......|.++.-.+..+.+..+|.+.+..     +.+..|...+|.+++  +|+.+.
T Consensus         9 i~~~~--Vviysk~~Cp~C~~ak~ll~~~~~~~~~~~~~e~d~~~d~~~~~~~l~~~~g~~tvPqIfi--~g~~IG   80 (105)
T d1ktea_           9 IQPGK--VVVFIKPTCPFCRKTQELLSQLPFKEGLLEFVDITATSDTNEIQDYLQQLTGARTVPRVFI--GKECIG   80 (105)
T ss_dssp             CCTTC--EEEEECSSCHHHHHHHHHHHHSCBCTTSEEEEEGGGSTTHHHHHHHHHHHHSCCCSCEEEE--TTEEEE
T ss_pred             hccCC--EEEEECCCCchHHHHHHHHHHhCCccceeeeeecccccccHHHHHHHhhccCCCcCcEEEE--CCEEEe
Confidence            34555  56799999999999999998876666667777777765532     233347788999877  886553

>d1xcca_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Plasmodium yoelii yoelii [TaxId: 73239]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: 1-Cys peroxiredoxin
species: Plasmodium yoelii yoelii [TaxId: 73239]

Probab=98.56  E-value=7e-08  Score=62.92  Aligned_cols=87  Identities=13%  Similarity=0.186  Sum_probs=66.2

Q ss_pred             CCCEEEEEEe-CCCChhhhhhhHhHHHHHHhCC--CcEEEEEeCCc----------------------------chhhhh
Q 032502           45 EGKIVIANFS-ATWCGPCRMIAPFFSELSEKYP--SLMFLLVDVDE----------------------------LVEFST   93 (139)
Q Consensus        45 ~~k~vlv~f~-~~~C~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~----------------------------~~~~~~   93 (139)
                      .++.+|++|| +.||+.|......+.+.+.++.  ++.++.+..|.                            +..+++
T Consensus        29 ~gk~vVLfFyP~dfTpvCttEl~~f~~~~~eF~~~~~~vigiS~Ds~~sh~~w~~~~~~~~~~~~l~fpllsD~~~~va~  108 (219)
T d1xcca_          29 ENSWAILFSHPNDFTPVCTTELAELGKMHEDFLKLNCKLIGFSCNSKESHDKWIEDIKYYGKLNKWEIPIVCDESRELAN  108 (219)
T ss_dssp             TTSEEEEECCSCTTCHHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHHTCSCCCCCEEECTTSHHHH
T ss_pred             CCCeEEEEEEcCCCCcccchhHHHHHHhhhhhcccceEEEeecCccHhHHhHHhhhhHhhcccCCCCcccccccccHHHH
Confidence            6899999999 9999999999999999888886  68888888863                            224677


Q ss_pred             hCCCcc----------ee---EEEEEeCCeEEEEEe-----CCChHHHHHHHHHHh
Q 032502           94 SWDIKA----------TP---TFFFLKDGQQVDKLV-----GANKPELQKKVAAAV  131 (139)
Q Consensus        94 ~~~v~~----------~P---t~~~~~~g~~~~~~~-----g~~~~~l~~~i~~~~  131 (139)
                      .||+..          .+   +|++..+|++...+.     |.+.+++.+.|+.+.
T Consensus       109 ~ygv~~~~~~~~~~~~~~~R~tFiIDp~g~Ir~~~~~~~~~gr~~~EiLr~l~aLQ  164 (219)
T d1xcca_         109 KLKIMDEQEKDITGLPLTCRCLFFISPEKKIKATVLYPATTGRNAHEILRVLKSLQ  164 (219)
T ss_dssp             HHTCEEEEEECTTSCEEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHHH
T ss_pred             HhCCcccccccCcccceeeeeeEEEcCcceEEEEEEeCCCcccCHHHHHHHHHHHH
Confidence            788731          22   455559999876643     237788888887764

>d1fova_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli, Grx3 [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Escherichia coli, Grx3 [TaxId: 562]

Probab=98.44  E-value=3.8e-07  Score=50.26  Aligned_cols=56  Identities=16%  Similarity=0.333  Sum_probs=43.2

Q ss_pred             EEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchh----hhhhCCCcceeEEEEEeCCeEE
Q 032502           50 IANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVE----FSTSWDIKATPTFFFLKDGQQV  112 (139)
Q Consensus        50 lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~----~~~~~~v~~~Pt~~~~~~g~~~  112 (139)
                      |..|..+||++|.+....|++.     ++.|..+|++.++.    +.+..|...+|.+++  +|+.+
T Consensus         3 I~iys~~~Cp~C~~ak~~L~~~-----~i~y~~~di~~~~~~~~~~~~~~g~~tvP~i~i--~~~~I   62 (82)
T d1fova_           3 VEIYTKETCPYCHRAKALLSSK-----GVSFQELPIDGNAAKREEMIKRSGRTTVPQIFI--DAQHI   62 (82)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHH-----TCCCEEEECTTCSHHHHHHHHHHSSCCSCEEEE--TTEEE
T ss_pred             EEEEeCCCCHhHHHHHHHHHHc-----CCCeEEEeccchHHHHHHHHHHhCCCCCCeEEE--CCEEE
Confidence            4568899999999999988776     67778888876654    344568889998866  77654

>d2djka1 c.47.1.2 (A:1-133) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

Probab=98.36  E-value=3.3e-06  Score=50.56  Aligned_cols=99  Identities=12%  Similarity=0.110  Sum_probs=74.3

Q ss_pred             chhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCC-cEEEEEeCCcchhhhhhCCC--cceeEEEEE-
Q 032502           31 TKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVDELVEFSTSWDI--KATPTFFFL-  106 (139)
Q Consensus        31 ~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~-v~~~~vd~~~~~~~~~~~~v--~~~Pt~~~~-  106 (139)
                      +.+++....    ..+++.+++|+... .........+.++++++.+ +.|+.+|.++.....+.||+  ...|.++++ 
T Consensus        12 ~~~n~~~~~----~~~~pl~~lf~~~~-~~~~~~~~~~~~vA~~~~~ki~Fv~vd~~~~~~~l~~~gl~~~~~P~~~i~~   86 (133)
T d2djka1          12 GPETYSDYM----SAGIPLAYIFAETA-EERKELSDKLKPIAEAQRGVINFGTIDAKAFGAHAGNLNLKTDKFPAFAIQE   86 (133)
T ss_dssp             CHHHHHHHH----HTTSCEEEEECSCS-SSHHHHHHHHHHHHHSSTTTSEEEEECTTTTGGGTTTTTCCSSSSSEEEEEC
T ss_pred             ChhhHHHHh----cCCCCEEEEEeCCc-hHHHHHHHHHHHHHHHhcCceEEEEEeHHHhHHHHHHhcCCcccCCcEEEEE
Confidence            455555555    35678888777654 4567889999999999986 99999999998888888998  568998888 


Q ss_pred             eCCeEEEEEe--CC-ChHHHHHHHHHHhhcc
Q 032502          107 KDGQQVDKLV--GA-NKPELQKKVAAAVDSV  134 (139)
Q Consensus       107 ~~g~~~~~~~--g~-~~~~l~~~i~~~~~~~  134 (139)
                      .+++....+.  +. +.+.|.+|++.+++..
T Consensus        87 ~~~~~~~~~~~~~~i~~~~i~~Fi~d~~~Gk  117 (133)
T d2djka1          87 VAKNQKFPFDQEKEITFEAIKAFVDDFVAGK  117 (133)
T ss_dssp             TTTCCBCCCCSSSCCCHHHHHHHHHHHHHTC
T ss_pred             cCCCceecCCccccCCHHHHHHHHHHHHcCC
Confidence            3444333332  33 8999999999988764

>d1nm3a1 c.47.1.1 (A:166-239) C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: C-terminal, Grx domain of Hybrid-Prx5
species: Haemophilus influenzae [TaxId: 727]

Probab=98.35  E-value=1.5e-06  Score=46.87  Aligned_cols=57  Identities=16%  Similarity=0.296  Sum_probs=42.8

Q ss_pred             EEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcch---hhhhhCCCcceeEEEEEeCCeEEE
Q 032502           50 IANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELV---EFSTSWDIKATPTFFFLKDGQQVD  113 (139)
Q Consensus        50 lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~---~~~~~~~v~~~Pt~~~~~~g~~~~  113 (139)
                      |+.|+.++|++|.++...|.+.     ++.|..++++.+.   .+.+..+...+|.+++  +|+.+.
T Consensus         7 I~iYs~~~C~~C~~ak~lL~~~-----~i~~~~~~v~~~~~~~~~~~~~~~~tvP~i~i--~g~~IG   66 (74)
T d1nm3a1           7 ISIFTKPGCPFCAKAKQLLHDK-----GLSFEEIILGHDATIVSVRAVSGRTTVPQVFI--GGKHIG   66 (74)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHH-----TCCCEEEETTTTCCHHHHHHHTCCSSSCEEEE--TTEEEE
T ss_pred             EEEEECCCCHHHHHHHHHHHHc-----CCCeEEEEccCcHHHHHHHHHhCCccCCEEEE--CCEEEE
Confidence            5668999999999999988776     5667777776543   3445667889999766  776553

>d2b5ea3 c.47.1.2 (A:240-364) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.20  E-value=2e-05  Score=46.65  Aligned_cols=99  Identities=15%  Similarity=0.173  Sum_probs=73.9

Q ss_pred             chhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCC-cEEEEEeCCcchhhhhhCCCc-ceeEEEEEe-
Q 032502           31 TKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVDELVEFSTSWDIK-ATPTFFFLK-  107 (139)
Q Consensus        31 ~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~-v~~~~vd~~~~~~~~~~~~v~-~~Pt~~~~~-  107 (139)
                      +.+++...+    .++.|+++.|+.+.- .-......+.++++++.+ +.|+.+|.++.....+.||+. ..|.+++.. 
T Consensus         6 ~~~~~~~y~----~~~~Pl~~~f~~~~~-~~~~~~~~~~~vAk~fkgki~Fv~~D~~~~~~~l~~fgl~e~~P~~~i~~~   80 (125)
T d2b5ea3           6 DGSVFAQYV----ESGLPLGYLFYNDEE-ELEEYKPLFTELAKKNRGLMNFVSIDARKFGRHAGNLNMKEQFPLFAIHDM   80 (125)
T ss_dssp             CHHHHHHHH----HTTSCEEEEEESSHH-HHHHHHHHHHHHHHHTTTTCEEEEEEHHHHTTHHHHTTCCSCSSEEEEEET
T ss_pred             CHHHHHHHH----hcCCCEEEEEeCChH-HHHHHHHHHHHHHHHhcCeeEEEEEchHHhHHHHHHcCCCccCCcEEEEec
Confidence            345555555    467898888888643 445788999999999986 999999999888888999975 489888873 


Q ss_pred             CCeEEEEEe-------------CC-ChHHHHHHHHHHhhcc
Q 032502          108 DGQQVDKLV-------------GA-NKPELQKKVAAAVDSV  134 (139)
Q Consensus       108 ~g~~~~~~~-------------g~-~~~~l~~~i~~~~~~~  134 (139)
                      .+.....+.             +. +.+.|.+|++++++..
T Consensus        81 ~~~~ky~~~~~~~~~~~~~~~~~e~t~~~i~~F~~d~l~GK  121 (125)
T d2b5ea3          81 TEDLKYGLPQLSEEAFDELSDKIVLESKAIESLVKDFLKGD  121 (125)
T ss_dssp             TTTEEEECCCCCHHHHHTCCSCCCCCHHHHHHHHHHHHHTC
T ss_pred             ccCcccccchhhhhhcccccccccCCHHHHHHHHHHHHcCC
Confidence            333333322             23 8999999999988764

>d1wika_ c.47.1.1 (A:) Thioredoxin-like protein 2 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein 2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.86  E-value=5.1e-05  Score=43.72  Aligned_cols=51  Identities=20%  Similarity=0.285  Sum_probs=38.9

Q ss_pred             CCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhhh----hhCCCcceeEEEEEeCCeEEE
Q 032502           56 TWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFS----TSWDIKATPTFFFLKDGQQVD  113 (139)
Q Consensus        56 ~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~----~~~~v~~~Pt~~~~~~g~~~~  113 (139)
                      |.|++|.++...|.++     ++.|..+|+++++++.    +..+-..+|.+++  +|+.+.
T Consensus        28 p~Cp~c~~ak~lL~~~-----~i~~~~~~v~~~~~~~~~l~~~t~~~TvPqIFi--~g~~IG   82 (109)
T d1wika_          28 AKCGFSKQILEILNST-----GVEYETFDILEDEEVRQGLKTFSNWPTYPQLYV--RGDLVG   82 (109)
T ss_dssp             CCSSTHHHHHHHHHHT-----CSCEEEEESSSCHHHHHHHHHHHSCCSSCEEEC--SSSEEE
T ss_pred             CCChHHHHHHHHHHhc-----CCCceEEEecccHHHHHHHHHhcCCCCCCeEEE--CCEEEc
Confidence            7899999999888654     6778888998876543    3446778999887  776554

>d1hd2a_ c.47.1.10 (A:) Peroxiredoxin 5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.62  E-value=6.7e-05  Score=46.11  Aligned_cols=96  Identities=18%  Similarity=0.129  Sum_probs=55.6

Q ss_pred             cCCCceEEeechh-HHHHHHHHHh-hCCCEEEEEEe-CCCChhhh-hhhHhHHHHHHhCC--C-cEEEEEeCC-------
Q 032502           21 FAGGNVSLVTTKD-IWDQKMSEAS-KEGKIVIANFS-ATWCGPCR-MIAPFFSELSEKYP--S-LMFLLVDVD-------   86 (139)
Q Consensus        21 ~~~~~~~~i~~~~-~~~~~~~~~~-~~~k~vlv~f~-~~~C~~C~-~~~~~l~~~~~~~~--~-v~~~~vd~~-------   86 (139)
                      ..|..+|++...+ +..+.+.+.. .++|.+||+|| ..|++.|. ...+.+.+....+.  + ..++.+..+       
T Consensus         4 kVGd~aP~f~l~~~~~~~~v~l~d~~~gk~vvL~fyP~afTp~Ct~~~~~~~~~~~~~~~~~g~~~i~~~s~~~~~~~~~   83 (161)
T d1hd2a_           4 KVGDAIPAVEVFEGEPGNKVNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKAKGVQVVACLSVNDAFVTGE   83 (161)
T ss_dssp             CTTCBCCCCEEECSSTTCEEEHHHHTTTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHTTTCCEEEEEESSCHHHHHH
T ss_pred             CCCCcCCCeEEEecCCCcEEEhHHHhCCCeEEEEEEeccccccchhhhhhHHHhhhHHHHHcCCeEEEEEecCchhhhhh
Confidence            3455555554321 2122233333 36899999999 89999995 46666666544432  3 334444443       


Q ss_pred             ----------------cchhhhhhCCCc-------------ceeEEEEEeCCeEEEEEe
Q 032502           87 ----------------ELVEFSTSWDIK-------------ATPTFFFLKDGQQVDKLV  116 (139)
Q Consensus        87 ----------------~~~~~~~~~~v~-------------~~Pt~~~~~~g~~~~~~~  116 (139)
                                      .+..+++.||+.             .-=+++++.+|++...+.
T Consensus        84 ~~~~~~~~~~~~llsD~~~~~a~~~g~~~~~~~~g~~~~~~s~r~~~I~~~G~I~~~~v  142 (161)
T d1hd2a_          84 WGRAHKAEGKVRLLADPTGAFGKETDLLLDDSLVSIFGNRRLKRFSMVVQDGIVKALNV  142 (161)
T ss_dssp             HHHHTTCTTTCEEEECTTCHHHHHHTCBCCSTTHHHHSSCCBCCEEEEEETTEEEEEEE
T ss_pred             hhhhcccccccccccCCcceeeeeeeeeeccccCccccccEEeEEEEEECCCEEEEEEE
Confidence                            233466677752             111467778999888765

>d1bjxa_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.49  E-value=0.00077  Score=38.56  Aligned_cols=94  Identities=10%  Similarity=0.123  Sum_probs=65.8

Q ss_pred             eEEeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhhhhhCCCcceeEEEE
Q 032502           26 VSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFF  105 (139)
Q Consensus        26 ~~~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~  105 (139)
                      +..+.+..+.+..+    .+++++||-|+...-.   .....+.++++.+.++.|..+.   +.++.+.+++.. |++++
T Consensus         2 a~~l~~~~~~e~f~----~~~~v~VVGfF~~~~~---~~~~~F~~~A~~~~d~~F~~t~---~~~v~~~~~v~~-~~Ivl   70 (110)
T d1bjxa_           2 ATTLPDGAAAESLV----ESSEVAVIGFFKDVES---DSAKQFLQAAEAIDDIPFGITS---NSDVFSKYQLDK-DGVVL   70 (110)
T ss_dssp             EEECCSHHHHHHHH----HHSSEEEEEECTTTTS---HHHHHHHHHHHHCSSSCEEEEC---CSHHHHHTTCSS-CEEEE
T ss_pred             ceEcCCHHHHHHHh----ccCCeEEEEEEcCCCc---hHHHHHHHHHHhCcCceEEEEC---CHHHHHHcCCCC-CeEEE
Confidence            34566777777666    4568999999875432   3456677888888778777654   446778999976 99999


Q ss_pred             EeCCeEEEE-EeCC-ChHHHHHHHHHH
Q 032502          106 LKDGQQVDK-LVGA-NKPELQKKVAAA  130 (139)
Q Consensus       106 ~~~g~~~~~-~~g~-~~~~l~~~i~~~  130 (139)
                      |++...... +.|. +.+.|.+||...
T Consensus        71 ~k~~de~~~~~~~~~~~~~l~~fi~~~   97 (110)
T d1bjxa_          71 FKKFDEGRNNFEGEVTKENLLDFIKHN   97 (110)
T ss_dssp             EESSSSSBCCCCSCCCHHHHHHHHHHH
T ss_pred             eccCCccccccCCCCCHHHHHHHHHHc
Confidence            965433322 3445 899999999875

>d2axoa1 c.47.1.19 (A:38-262) Hypothetical protein Atu2684 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Atu2684-like
domain: Hypothetical protein Atu2684
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.29  E-value=0.0016  Score=41.98  Aligned_cols=83  Identities=17%  Similarity=0.192  Sum_probs=59.1

Q ss_pred             CEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCc-------c-----------hhhhhhCCCcceeE--EEEE
Q 032502           47 KIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDE-------L-----------VEFSTSWDIKATPT--FFFL  106 (139)
Q Consensus        47 k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~-------~-----------~~~~~~~~v~~~Pt--~~~~  106 (139)
                      +.||=.|.+.||+.|-.....|.++.+. ++|..+.+..|-       +           ......++..++||  +++ 
T Consensus         6 ~aVVElFTSqgCssCPpAd~~L~~L~~~-~~Vi~La~HVdYWd~lGw~D~fa~~~~t~RQ~~Y~~~~g~~~vyTPq~vv-   83 (225)
T d2axoa1           6 KGVVELFTSQGCASCPPADEALRKMIQK-GDVVGLSYHVDYWNYLGWTDSLASKENTERQYGYMRALGRNGVYTPQAIL-   83 (225)
T ss_dssp             CCEEEEEECTTCTTCHHHHHHHHHHHHH-TSSEEEEEECSTTCSSSSCCTTCCHHHHHHHHHHHHHTTCSCCCSSEEEE-
T ss_pred             CcEEEEeeCCCCCCCHHHHHHHHHhhCC-CCEEEEEeccccccccCCCCCCCCchhhHHHHHHHHhcCCCCCCceeEEE-
Confidence            4566667799999999999999999876 577777776641       1           23455667776555  555 


Q ss_pred             eCCeEEEEEeCCChHHHHHHHHHHhhcc
Q 032502          107 KDGQQVDKLVGANKPELQKKVAAAVDSV  134 (139)
Q Consensus       107 ~~g~~~~~~~g~~~~~l~~~i~~~~~~~  134 (139)
                       ||+...  .|.+...+...|.+.....
T Consensus        84 -nG~~~~--~gs~~~~~~~~i~~~~~~~  108 (225)
T d2axoa1          84 -NGRDHV--KGADVRGIYDRLDAFKREG  108 (225)
T ss_dssp             -TTTEEE--ETTCHHHHHHHHHHHHHTT
T ss_pred             -eCcccc--cccCHHHHHHHHHHHhhcC
Confidence             887543  4778888888888876543

>d1g7oa2 c.47.1.5 (A:1-75) Glutaredoxin 2 {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Glutaredoxin 2
species: Escherichia coli [TaxId: 562]

Probab=97.18  E-value=0.0032  Score=33.30  Aligned_cols=72  Identities=11%  Similarity=0.075  Sum_probs=50.4

Q ss_pred             EEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhhhhhCCCcceeEEEEEeCCeEEEEEeCCChHHHHHHHHHHh
Q 032502           52 NFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKVAAAV  131 (139)
Q Consensus        52 ~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~l~~~i~~~~  131 (139)
                      .|..+.||+|++.+-.+....-   ++.+..++.+...++.+..+...+|+++. .+|+.+.     +...|.++|++.-
T Consensus         3 LY~~~~cP~~~rvr~~l~~kgi---~~e~~~~~~~~~~~~~~~~p~~~VP~L~~-~dg~~i~-----eS~~I~~yLd~~~   73 (75)
T d1g7oa2           3 LYIYDHCPYCLKARMIFGLKNI---PVELHVLLNDDAETPTRMVGQKQVPILQK-DDSRYMP-----ESMDIVHYVDKLD   73 (75)
T ss_dssp             EEECTTCHHHHHHHHHHHHHTC---CCEEEECCTTTTHHHHHHHSSSCCCEEEE-TTTEEEE-----CHHHHHHHHHHHT
T ss_pred             EEccCCCCchHHHHHHHHHhCC---CcccccccccchHHHHHhCCCCceEEEEE-cCCCEEe-----cHHHHHHHHHHhh
Confidence            3668899999999988866522   24455555566666667777889998764 4676544     5678888888764


Q ss_pred             h
Q 032502          132 D  132 (139)
Q Consensus       132 ~  132 (139)
                      +
T Consensus        74 G   74 (75)
T d1g7oa2          74 G   74 (75)
T ss_dssp             T
T ss_pred             C
Confidence            3

>d1hyua3 c.47.1.2 (A:1-102) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.99  E-value=0.0042  Score=34.95  Aligned_cols=79  Identities=18%  Similarity=0.126  Sum_probs=59.4

Q ss_pred             CCEEEEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcchhhhhhCCCcceeEEEEEeCCeEE-EEEeCC-ChHHH
Q 032502           46 GKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQV-DKLVGA-NKPEL  123 (139)
Q Consensus        46 ~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~-~~~~g~-~~~~l  123 (139)
                      .++|.+.++...|..|..+...+++++.-.+.+.+..-+.          +....|++.+..+|... -++.|. ...+|
T Consensus        18 ~~~V~l~~~~~~~~~s~el~~~l~eva~lSdkI~~~~~~~----------~~~r~Ps~~i~~~g~~~gI~F~GiP~GhEF   87 (102)
T d1hyua3          18 TKPVELIATLDDSAKSAEIKELLAEIAELSDKVTFKEDNT----------LPVRKPSFLITNPGSQQGPRFAGSPLGHEF   87 (102)
T ss_dssp             CSCEEEEEECCSSHHHHHHHHHHHHHHTTCTTEEEEECTT----------SSSCSSEEEEECTTCCCSCEEESCCCGGGH
T ss_pred             CCCEEEEEEeCCChhHHHHHHHHHHHHhhCCCeEEEEcCC----------CCCCCCeEEEecCCCEeeeEEecCCCcccH
Confidence            4567777788899999999999999998877676653222          22346999988766542 467788 88999


Q ss_pred             HHHHHHHhhcc
Q 032502          124 QKKVAAAVDSV  134 (139)
Q Consensus       124 ~~~i~~~~~~~  134 (139)
                      ..+|..+++..
T Consensus        88 ~Slilail~v~   98 (102)
T d1hyua3          88 TSLVLALLWTG   98 (102)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHhcc
Confidence            99999988764

>d1un2a_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Escherichia coli [TaxId: 562]

Probab=96.97  E-value=0.00017  Score=45.71  Aligned_cols=42  Identities=17%  Similarity=0.400  Sum_probs=33.0

Q ss_pred             CCCEEEEEEeCCCChhhhhhhHhHH---HHHHhCC-CcEEEEEeCC
Q 032502           45 EGKIVIANFSATWCGPCRMIAPFFS---ELSEKYP-SLMFLLVDVD   86 (139)
Q Consensus        45 ~~k~vlv~f~~~~C~~C~~~~~~l~---~~~~~~~-~v~~~~vd~~   86 (139)
                      .+++.|+.|++-+||+|..+.|.+.   ++.+.++ ++.|......
T Consensus       112 ~~~~~VvEffsy~Cp~C~~~e~~l~~~~~~~~~~~~~v~~~~~~~~  157 (195)
T d1un2a_         112 AGAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPEGVKMTKYHVN  157 (195)
T ss_dssp             TTCCSEEEEECTTCHHHHHHHHTSCHHHHHTTSSCTTCCEEEEECS
T ss_pred             CCCceEEEEEecCCccccccchhhhHHHHHHhhcCCCcEEEEEecC
Confidence            3678899999999999999999874   6667777 4777666553

>d1a8ya2 c.47.1.3 (A:127-228) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=96.94  E-value=0.0051  Score=34.55  Aligned_cols=93  Identities=13%  Similarity=0.114  Sum_probs=61.2

Q ss_pred             EeechhHHHHHHHHHhhCCCEEEEEEeCCCChhhhhhhHhHHHHHHhC-CCcEEEEEeCCcchhhhhhCCCcceeEEEEE
Q 032502           28 LVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKY-PSLMFLLVDVDELVEFSTSWDIKATPTFFFL  106 (139)
Q Consensus        28 ~i~~~~~~~~~~~~~~~~~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~-~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~  106 (139)
                      .|.+.++.+..+.   .++.++||-|+...-+.   ....+.++++.+ +++.|....   +.++++.||+. .|++++|
T Consensus         3 ~i~~~~e~~~F~~---~~d~v~VvGfF~~~~~~---~~~~F~~~A~~~rd~~~F~~t~---d~~va~~~~v~-~~~vvlf   72 (102)
T d1a8ya2           3 LIEGERELQAFEN---IEDEIKLIGYFKNKDSE---HYKAFKEAAEEFHPYIPFFATF---DSKVAKKLTLK-LNEIDFY   72 (102)
T ss_dssp             EECSHHHHHHHTT---CCSSCEEEEECSSTTCH---HHHHHHHHHHHHTTTSCEEEEC---CHHHHHHHCCC-TTCEEEE
T ss_pred             eecCHHHHHHHhc---cCCCEEEEEEECCCCcH---HHHHHHHHHHHcCCCceEEEEC---CHHHHHHcCCC-CCCEEEe
Confidence            3455555555542   24678899998753332   445566666665 457777654   77889999995 6999999


Q ss_pred             eCC-eEEEEEeCC--ChHHHHHHHHHH
Q 032502          107 KDG-QQVDKLVGA--NKPELQKKVAAA  130 (139)
Q Consensus       107 ~~g-~~~~~~~g~--~~~~l~~~i~~~  130 (139)
                      +.= .....+.|.  +.++|.+||.+.
T Consensus        73 r~fde~~~~~~~~~~t~~~i~~Fi~~n   99 (102)
T d1a8ya2          73 EAFMEEPVTIPDKPNSEEEIVNFVEEH   99 (102)
T ss_dssp             CTTCSSEEECSSSSCCHHHHHHHHHHT
T ss_pred             eecCCCceecCCCCCCHHHHHHHHHHh
Confidence            431 222334453  899999999875

>d1nm3a2 c.47.1.10 (A:3-165) N-terminal, Prx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: N-terminal, Prx domain of Hybrid-Prx5
species: Haemophilus influenzae [TaxId: 727]

Probab=96.72  E-value=0.0021  Score=39.23  Aligned_cols=25  Identities=16%  Similarity=0.037  Sum_probs=20.5

Q ss_pred             hCCCEEEEEEe-CCCChhhhhhhHhH
Q 032502           44 KEGKIVIANFS-ATWCGPCRMIAPFF   68 (139)
Q Consensus        44 ~~~k~vlv~f~-~~~C~~C~~~~~~l   68 (139)
                      .++|.|||+|| +.+.+.|...+..+
T Consensus        29 ~~gk~VVL~f~P~afTp~Ct~e~~~~   54 (163)
T d1nm3a2          29 FDNKTVIVFSLPGAFTPTCSSSHLPR   54 (163)
T ss_dssp             HTTSEEEEEEESCSSCHHHHHTHHHH
T ss_pred             hCCCeEEEEEEeccccccchhhhhhh
Confidence            36899999999 89999999876544

>d1t1va_ c.47.1.14 (A:) SH3BGRL3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: SH3BGR (SH3-binding, glutamic acid-rich protein-like)
domain: SH3BGRL3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.59  E-value=0.0099  Score=32.61  Aligned_cols=57  Identities=11%  Similarity=0.160  Sum_probs=40.3

Q ss_pred             EEEEeCCCCh------hhhhhhHhHHHHHHhCCCcEEEEEeCCcchhhhh----h--CCCcceeEEEEEeCCeEEE
Q 032502           50 IANFSATWCG------PCRMIAPFFSELSEKYPSLMFLLVDVDELVEFST----S--WDIKATPTFFFLKDGQQVD  113 (139)
Q Consensus        50 lv~f~~~~C~------~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~----~--~~v~~~Pt~~~~~~g~~~~  113 (139)
                      +..|++++|+      .|.++...|+..     ++.|..+|++.+.....    .  .+...+|.+++  +|+.+.
T Consensus         4 i~vy~ts~~~~~~~~~~~~r~~~lL~~~-----~I~y~~iDi~~d~~~~~~~~~~~g~~~~t~Pqifv--~~~~iG   72 (93)
T d1t1va_           4 LRVYSTSVTGSREIKSQQSEVTRILDGK-----RIQYQLVDISQDNALRDEMRTLAGNPKATPPQIVN--GNHYCG   72 (93)
T ss_dssp             EEEEECSSCSCHHHHHHHHHHHHHHHHT-----TCCCEEEETTSCHHHHHHHHHHTTCTTCCSCEEEE--TTEEEE
T ss_pred             EEEEEccCcCChhhHHHHHHHHHHHHHC-----CCceEEEEecCchhHHHHHHHhccCCCceeEEEEE--CCEEEe
Confidence            4567899995      788888887664     78888999987655432    1  23456788777  776655

>d1tp9a1 c.47.1.10 (A:1-162) Plant peroxiredoxin {Western balsam poplar(Populus trichocarpa) [TaxId: 3694]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Plant peroxiredoxin
species: Western balsam poplar(Populus trichocarpa) [TaxId: 3694]

Probab=96.55  E-value=0.0051  Score=37.34  Aligned_cols=72  Identities=15%  Similarity=0.198  Sum_probs=44.6

Q ss_pred             hCCCEEEEEEe-CCCChhhh-hhhHhHHHHHHh---CCCcEEEEEeCCc-----------------------chhhhhhC
Q 032502           44 KEGKIVIANFS-ATWCGPCR-MIAPFFSELSEK---YPSLMFLLVDVDE-----------------------LVEFSTSW   95 (139)
Q Consensus        44 ~~~k~vlv~f~-~~~C~~C~-~~~~~l~~~~~~---~~~v~~~~vd~~~-----------------------~~~~~~~~   95 (139)
                      .++|.+||+|| ..+++.|. ...+......+.   .....++.+..+.                       +.++.+.|
T Consensus        33 ~~gk~vVl~f~P~afT~~Ct~e~~~~~~~~~d~~~~~g~~~v~~isvd~~~~~~~~~~~~~~~~~~~~lsD~~~~~~~~~  112 (162)
T d1tp9a1          33 VAGKKVILFGVPGAFTPTCSLKHVPGFIEKAGELKSKGVTEILCISVNDPFVMKAWAKSYPENKHVKFLADGSATYTHAL  112 (162)
T ss_dssp             HTTSEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHHTTCCCEEEEESSCHHHHHHHHHTCTTCSSEEEEECTTSHHHHHT
T ss_pred             hCCCeEEEEEEecccchhhhhhcchHHHHhhhHHHHcCCcceeeeeccchhhhhhhhhhcccccccccccchhhHHHhhh
Confidence            36899999999 99999996 555555554443   2234455555532                       23456667


Q ss_pred             CCcc---------ee---EEEEEeCCeEEEEEe
Q 032502           96 DIKA---------TP---TFFFLKDGQQVDKLV  116 (139)
Q Consensus        96 ~v~~---------~P---t~~~~~~g~~~~~~~  116 (139)
                      |+..         ..   ++++ .+|++...+.
T Consensus       113 g~~~~~~~~g~g~~~~R~tfiI-ddg~I~~~~v  144 (162)
T d1tp9a1         113 GLELDLQEKGLGTRSRRFALLV-DDLKVKAANI  144 (162)
T ss_dssp             TCEEEETTTTSEEEECCEEEEE-ETTEEEEEEE
T ss_pred             hhccccccccCCcEEEEEEEEE-ECCEEEEEEE
Confidence            7531         11   4555 5899888765

>d1t4za_ c.47.1.15 (A:) Adaptive-response sensory-kinase SasA, N-terminal domain {Synechococcus elongatus [TaxId: 32046]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: KaiB-like
domain: Adaptive-response sensory-kinase SasA, N-terminal domain
species: Synechococcus elongatus [TaxId: 32046]

Probab=95.79  E-value=0.06  Score=30.05  Aligned_cols=82  Identities=9%  Similarity=0.135  Sum_probs=59.9

Q ss_pred             EEEEEEeCCCChhhhhhhHhHHHHHHhCC-C--cEEEEEeCCcchhhhhhCCCcceeEEEEE-eCCeEEEEEeCC-ChHH
Q 032502           48 IVIANFSATWCGPCRMIAPFFSELSEKYP-S--LMFLLVDVDELVEFSTSWDIKATPTFFFL-KDGQQVDKLVGA-NKPE  122 (139)
Q Consensus        48 ~vlv~f~~~~C~~C~~~~~~l~~~~~~~~-~--v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~-~~g~~~~~~~g~-~~~~  122 (139)
                      +..+..|...-+.+......+..+.+.+. +  +.+-.||+.+++++++.+.|-.+||++-. ..  +..++.|. -...
T Consensus        12 ~l~L~LfV~g~p~S~~ai~~l~~~le~~~~g~~y~LeVIDv~~qPelaE~~~IvATPtLIK~~P~--P~q~l~Gs~i~~q   89 (105)
T d1t4za_          12 PLLLQLFVDTRPLSQHIVQRVKNILAAVEATVPISLQVINVADQPQLVEYYRLVVTPALVKIGPG--SRQVLSGIDLTDQ   89 (105)
T ss_dssp             CEEEEEEECSCHHHHHHHHHHHHHHTTTCCSSCEEEEEEETTTCHHHHHHTTCCSSSEEEEEESS--CCEEEESSCHHHH
T ss_pred             CeEEEEEEcCCcchHHHHHHHHHHHHHhcCCCceEEEEeecccCHhHHhhCCEEeccHhhhcCCC--cceeecChhHHHH
Confidence            34444554445777777778888877653 3  78889999999999999999999999976 33  33566787 4666


Q ss_pred             HHHHHHHHh
Q 032502          123 LQKKVAAAV  131 (139)
Q Consensus       123 l~~~i~~~~  131 (139)
                      +..|.-+..
T Consensus        90 l~~w~prwq   98 (105)
T d1t4za_          90 LANQLPQWL   98 (105)
T ss_dssp             HHHHHHHHH
T ss_pred             HhhhhhHhh
Confidence            777665543

>d1abaa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Bacteriophage T4 [TaxId: 10665]

Probab=95.24  E-value=0.011  Score=32.05  Aligned_cols=51  Identities=22%  Similarity=0.352  Sum_probs=33.0

Q ss_pred             CCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcch---------hhhhh-----CCCcceeEEEEEeCCeEE
Q 032502           56 TWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELV---------EFSTS-----WDIKATPTFFFLKDGQQV  112 (139)
Q Consensus        56 ~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~---------~~~~~-----~~v~~~Pt~~~~~~g~~~  112 (139)
                      +.|++|.+....|.+.     ++.|..+++++..         ++.++     .+...+|.+++ .+|+.+
T Consensus        12 ~~C~~C~~AK~lL~~~-----~i~y~~~~i~~~~~~~~~~~~~e~~~~~~~~~~~~~TvPqIfi-~dg~~I   76 (87)
T d1abaa_          12 HKCGPCDNAKRLLTVK-----KQPFEFINIMPEKGVFDDEKIAELLTKLGRDTQIGLTMPQVFA-PDGSHI   76 (87)
T ss_dssp             SCCHHHHHHHHHHHHT-----TCCEEEEESCSBTTBCCHHHHHHHHHHHTCSCCTTCCSCEEEC-TTSCEE
T ss_pred             CCChhHHHHHHHHHHc-----CCCceeccccccccccCHHHHHHHHHHhcccCCCCceeCeEEe-cCCcEE
Confidence            3599999998877665     6777777775432         11222     35678998854 456544

>d1r5pa_ c.47.1.15 (A:) Circadian oscillation regulator KaiB {Cyanobacterium (Nostoc sp.) pcc 7120 [TaxId: 1180]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: KaiB-like
domain: Circadian oscillation regulator KaiB
species: Cyanobacterium (Nostoc sp.) pcc 7120 [TaxId: 1180]

Probab=94.90  E-value=0.0059  Score=33.35  Aligned_cols=57  Identities=18%  Similarity=0.105  Sum_probs=47.7

Q ss_pred             EEEEEEeCCCChhhhhhhHhHHHHHHhC-C-CcEEEEEeCCcchhhhhhCCCcceeEEE
Q 032502           48 IVIANFSATWCGPCRMIAPFFSELSEKY-P-SLMFLLVDVDELVEFSTSWDIKATPTFF  104 (139)
Q Consensus        48 ~vlv~f~~~~C~~C~~~~~~l~~~~~~~-~-~v~~~~vd~~~~~~~~~~~~v~~~Pt~~  104 (139)
                      .++-.|-+...+.+......+.++.+.+ + .+.+-.||+.+++++++.++|-.+||++
T Consensus         2 y~L~LyVaG~tp~S~~ai~nl~~i~e~~l~~~y~LeVIDv~~qP~lAe~~~IvATPtLv   60 (90)
T d1r5pa_           2 YVLKLYVAGNTPNSVRALKTLKNILEQEFQGIYALKVIDVLKNPQLAEEDKILATPTLS   60 (90)
T ss_dssp             EEEEEEESSCCHHHHHHHHHHHHHHHHHHTTSEEEEEEETTTSCSCCTTCCEECHHHHG
T ss_pred             eEEEEEEcCCChhHHHHHHHHHHHHHHhcCCcEEEEEEEcccCHhHHhhCCEEeehHHH
Confidence            3566677888899999888898887765 2 3888899999999999999999999865

>d1z9ha2 c.47.1.5 (A:100-212) Microsomal prostaglandin E synthase-2 {Crab-eating macaque (Macaca fascicularis) [TaxId: 9541]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Microsomal prostaglandin E synthase-2
species: Crab-eating macaque (Macaca fascicularis) [TaxId: 9541]

Probab=94.68  E-value=0.16  Score=28.49  Aligned_cols=75  Identities=11%  Similarity=0.117  Sum_probs=45.7

Q ss_pred             EEEEeCCCChhhhhhhHhHHHHHHhCCCcEEE--EEeCCcchhhhhhCCCcceeEEEEEeCCeEEEEEeCCChHHHHHHH
Q 032502           50 IANFSATWCGPCRMIAPFFSELSEKYPSLMFL--LVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKV  127 (139)
Q Consensus        50 lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~--~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~l~~~i  127 (139)
                      +..+..++||+|++++-.|...     ++.+-  .++......+ ..-+...+|+++...++.-..   =.+...|.+.|
T Consensus         3 i~LY~~~~sP~~~kvr~~L~~k-----~l~~~~~~v~~~~~~~~-~~~~~~~vP~l~~~~~~~g~~---i~eS~~Ii~YL   73 (113)
T d1z9ha2           3 LTLYQYKTCPFCSKVRAFLDFH-----ALPYQVVEVNPVLRAEI-KFSSYRKVPILVAQEGESSQQ---LNDSSVIISAL   73 (113)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT-----TCCEEEEECCTTTCGGG-TTCSCCSSCEEEEEETTEEEE---ECSHHHHHHHH
T ss_pred             EEEEcCCCChHHHHHHHHHHHc-----CCeeEEeccCcccchhh-ccCccccccccccccCCCceE---eecHHHHHHHH
Confidence            4556788999999999888664     44444  4444433333 334567899866553322111   12667888888


Q ss_pred             HHHhhc
Q 032502          128 AAAVDS  133 (139)
Q Consensus       128 ~~~~~~  133 (139)
                      ++....
T Consensus        74 ~~~~~~   79 (113)
T d1z9ha2          74 KTYLVS   79 (113)
T ss_dssp             HHHHHH
T ss_pred             HHHCCC
Confidence            876544

>d1un2a_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Escherichia coli [TaxId: 562]

Probab=94.37  E-value=0.018  Score=36.03  Aligned_cols=45  Identities=13%  Similarity=0.213  Sum_probs=29.6

Q ss_pred             chhhhhhCCCcceeEEEEEeCCeEEEEEeCC---C----hHHHHHHHHHHhhcc
Q 032502           88 LVEFSTSWDIKATPTFFFLKDGQQVDKLVGA---N----KPELQKKVAAAVDSV  134 (139)
Q Consensus        88 ~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~---~----~~~l~~~i~~~~~~~  134 (139)
                      ...+++++||+++||+++  ||+.+-...+.   +    .+++.+.++.++.+.
T Consensus        39 ~~~~a~~~gi~GtPtfiV--nGky~v~~~~~~~~~~~~~~~~~~~~~~~L~~k~   90 (195)
T d1un2a_          39 QEKAAADVQLRGVPAMFV--NGKYQLNPQGMDTSNMDVFVQQYADTVKYLSEKK   90 (195)
T ss_dssp             HHHHHHHTTCCSSSEEEE--TTTEEECGGGSCCSSHHHHHHHHHHHHHHHTC--
T ss_pred             HHHHHHHhCCCcCCEEEE--CCeeeeccccccccchhhhHHHHHHHHHHHHhCc
Confidence            456788999999999998  88755433232   2    356666666666653

>d1r4wa_ c.47.1.13 (A:) Mitochondrial class kappa glutathione S-transferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Mitochondrial class kappa glutathione S-transferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.05  E-value=0.23  Score=30.58  Aligned_cols=29  Identities=7%  Similarity=-0.014  Sum_probs=24.7

Q ss_pred             EEEEEEeCCCChhhhhhhHhHHHHHHhCC
Q 032502           48 IVIANFSATWCGPCRMIAPFFSELSEKYP   76 (139)
Q Consensus        48 ~vlv~f~~~~C~~C~~~~~~l~~~~~~~~   76 (139)
                      ..|-+|+..-||+|.-....+.++.+.++
T Consensus         5 k~I~~y~D~~sP~~Yl~~~~l~~l~~~~~   33 (221)
T d1r4wa_           5 RVLELFYDVLSPYSWLGFEVLCRYQHLWN   33 (221)
T ss_dssp             EEEEEEECTTCHHHHHHHHHHHHHTTTSS
T ss_pred             CEEEEEEeCCCHHHHHHHHHHHHHHHHcC
Confidence            45667778999999999999999988874

>d1a8ya3 c.47.1.3 (A:229-347) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=92.75  E-value=0.41  Score=26.83  Aligned_cols=86  Identities=15%  Similarity=0.217  Sum_probs=62.5

Q ss_pred             CCEEEEEEeCCCChhhhhhhHhHHHHHHhCC---CcEEEEEeCCcchhh----hhhCCCc-ceeEEEEE--eCCeEEEEE
Q 032502           46 GKIVIANFSATWCGPCRMIAPFFSELSEKYP---SLMFLLVDVDELVEF----STSWDIK-ATPTFFFL--KDGQQVDKL  115 (139)
Q Consensus        46 ~k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~---~v~~~~vd~~~~~~~----~~~~~v~-~~Pt~~~~--~~g~~~~~~  115 (139)
                      +...++.|--...+.-..|.+.++++++.+.   +..|+.||.+.-+-+    .+.|+|. .-|.+=++  .+..-+..-
T Consensus        19 ~g~~IvAFaee~d~dG~eFl~ilk~vA~~nt~n~~LsivWIDPD~FPlm~~yWe~tF~IDl~~PqIGVVdv~dadSvW~~   98 (119)
T d1a8ya3          19 DGIHIVAFAEEADPDGYEFLEILKSVAQDNTDNPDLSIIWIDPDDFPLLVPYWEKTFDIDLSAPQIGVVNVTDADSVWME   98 (119)
T ss_dssp             TTEEEEEECCTTSHHHHHHHHHHHHHHHHSTTCSSCCEEEECGGGCTTTHHHHHHHHTCCTTSCEEEEEETTTCCEEECC
T ss_pred             CCceEEEEecCCCccHHHHHHHHHHHHHHcCcCCCceEEEECCcccchHHHHHHHhcCCCCCCCceeeEecccCcceeee
Confidence            4567777889999999999999999999985   599999999987755    3456654 34887666  344433321


Q ss_pred             e----CC-ChHHHHHHHHHHh
Q 032502          116 V----GA-NKPELQKKVAAAV  131 (139)
Q Consensus       116 ~----g~-~~~~l~~~i~~~~  131 (139)
                      .    .. +.++|+++|+..+
T Consensus        99 ~~~~~d~~t~~~Le~WiedVl  119 (119)
T d1a8ya3          99 MDDEEDLPSAEELEDWLEDVL  119 (119)
T ss_dssp             -------CCHHHHHHHHHHHC
T ss_pred             cccccccccHHHHHHHHHHhC
Confidence            1    22 7888999998764

>d1eema2 c.47.1.5 (A:5-102) Class omega GST {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class omega GST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.60  E-value=0.38  Score=26.13  Aligned_cols=72  Identities=11%  Similarity=0.070  Sum_probs=47.0

Q ss_pred             EEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcch-hhhhhCCCcceeEEEEEeCCeEEEEEeCCChHHHHHHHH
Q 032502           50 IANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELV-EFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKVA  128 (139)
Q Consensus        50 lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~-~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~l~~~i~  128 (139)
                      +-.|..++|++|++++-.+....   -.+.++.+|....+ ++.+......+|++.. .+|..+.     +...|.++|+
T Consensus        20 ~~Ly~~~~sP~~~rv~~~l~~kg---i~~e~~~v~~~~~~~~~~~~nP~g~VPvL~~-~dg~~i~-----eS~aI~~YL~   90 (98)
T d1eema2          20 IRIYSMRFCPFAERTRLVLKAKG---IRHEVININLKNKPEWFFKKNPFGLVPVLEN-SQGQLIY-----ESAITCEYLD   90 (98)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHTT---CCEEEEEBCTTSCCGGGGGTCTTCCSCEEEE-TTCCEEE-----SHHHHHHHHH
T ss_pred             EEEEcCCCChHHHHHHHHHHHhC---CCCEEEEecccCCcHHHHhhhccccceeEEe-CCCCEEc-----CHHHHHHHHH
Confidence            45567889999999987775531   13555666665433 3445555678999865 4566543     5677778777


Q ss_pred             HH
Q 032502          129 AA  130 (139)
Q Consensus       129 ~~  130 (139)
                      +.
T Consensus        91 e~   92 (98)
T d1eema2          91 EA   92 (98)
T ss_dssp             HH
T ss_pred             HH
Confidence            65

>d1s3aa1 c.47.1.22 (A:15-99) NADH-ubiquinone oxidoreductase b8 subunit, CI-B8 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Mitochondrial ribosomal protein L51/S25/CI-B8 domain
domain: NADH-ubiquinone oxidoreductase b8 subunit, CI-B8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.80  E-value=0.45  Score=25.20  Aligned_cols=74  Identities=15%  Similarity=0.267  Sum_probs=51.2

Q ss_pred             EEEEeCCCChhhhhhhHh----HHHHHHhCCCcEEEEEeCCcchhhhhhCCCcceeEEEEE-eCCeEEEEEeCC-ChHHH
Q 032502           50 IANFSATWCGPCRMIAPF----FSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFL-KDGQQVDKLVGA-NKPEL  123 (139)
Q Consensus        50 lv~f~~~~C~~C~~~~~~----l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~-~~g~~~~~~~g~-~~~~l  123 (139)
                      |...|..|++.++-++..    |.+++.+.|++.|+.--..         +  ..|.+... .+|+....-... +.++|
T Consensus         5 l~~~yc~~~~sS~G~R~Fi~~~l~~~~~~NP~v~i~v~~~~---------~--~~P~l~a~y~nG~e~~i~l~n~~~~eI   73 (85)
T d1s3aa1           5 IRIHLCQRSPGSQGVRDFIEKRYVELKKANPDLPILIRECS---------D--VQPKLWARYAFGQETNVPLNNFSADQV   73 (85)
T ss_dssp             EEEECCSSSCCCHHHHHHHHHTHHHHHHHSTTCCEEEECCC---------S--SSCEEEEEESSCCEEEEECTTCCHHHH
T ss_pred             EEEEEcCCCCCcHHHHHHHHHhHHHHHHHCCCceEEEEEcC---------C--CCCEEEEEEcCCcEEEEECCCCCHHHH
Confidence            455677777776666554    5678888888877664221         1  24765555 899887765555 99999


Q ss_pred             HHHHHHHhhcc
Q 032502          124 QKKVAAAVDSV  134 (139)
Q Consensus       124 ~~~i~~~~~~~  134 (139)
                      .+.|..++...
T Consensus        74 ~~~l~~L~~~~   84 (85)
T d1s3aa1          74 TRALENVLSGK   84 (85)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHcCC
Confidence            99999987653

>d1k0da2 c.47.1.5 (A:109-200) Yeast prion protein ure2p, nitrogen regulation fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Yeast prion protein ure2p, nitrogen regulation fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.10  E-value=0.57  Score=25.01  Aligned_cols=76  Identities=14%  Similarity=0.037  Sum_probs=49.7

Q ss_pred             EEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcc----hhhhhhCCCcceeEEEEE-eCCeEEEEEeCCChHHHH
Q 032502           50 IANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDEL----VEFSTSWDIKATPTFFFL-KDGQQVDKLVGANKPELQ  124 (139)
Q Consensus        50 lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~----~~~~~~~~v~~~Pt~~~~-~~g~~~~~~~g~~~~~l~  124 (139)
                      +..++.++|++|++++-.|+++.-   .+..+.+|....    +++.+.-....+|+++.- .+|..+.     ....|.
T Consensus         6 ~tLY~~~~sp~~~kV~~~L~e~gi---~ye~~~v~~~~~~~~~~~~~~~np~g~vP~L~d~~~~~~~l~-----ES~aI~   77 (92)
T d1k0da2           6 YTLFSHRSAPNGFKVAIVLSELGF---HYNTIFLDFNLGEHRAPEFVSVNPNARVPALIDHGMDNLSIW-----ESGAIL   77 (92)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHTTC---CEEEEECCTTTTGGGSHHHHTTCTTCCSCEEEEGGGTTEEEE-----SHHHHH
T ss_pred             eEEeeCCCCccHHHHHHHHHHcCC---CCEEEEeeccCCcccCHHHHHHhhccccceeEEecccceEEc-----CHHHHH
Confidence            456778999999999988876621   355566666432    344444556789998764 4665543     566777


Q ss_pred             HHHHHHhhc
Q 032502          125 KKVAAAVDS  133 (139)
Q Consensus       125 ~~i~~~~~~  133 (139)
                      .+|.+--..
T Consensus        78 ~YL~~~y~~   86 (92)
T d1k0da2          78 LHLVNKYYK   86 (92)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHhCc
Confidence            777665433

>d1k0ma2 c.47.1.5 (A:6-91) Chloride intracellular channel 1 (clic1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Chloride intracellular channel 1 (clic1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.95  E-value=0.57  Score=24.76  Aligned_cols=66  Identities=8%  Similarity=0.043  Sum_probs=45.9

Q ss_pred             CCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcc-hhhhhhCCCcceeEEEEEeCCeEEEEEeCCChHHHHHHHHHHh
Q 032502           56 TWCGPCRMIAPFFSELSEKYPSLMFLLVDVDEL-VEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKVAAAV  131 (139)
Q Consensus        56 ~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~-~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~l~~~i~~~~  131 (139)
                      .+|++|++.+-.+....   -.+....+|.... .++.+......+|++..  +|..+.     +...|.++|++..
T Consensus        17 ~~cPf~~rv~~~L~~kg---i~~~~~~v~~~~~~~~~~~~nP~~~vPvL~~--~~~~i~-----eS~~I~~YLee~~   83 (86)
T d1k0ma2          17 GNCPFSQRLFMVLWLKG---VTFNVTTVDTKRRTETVQKLCPGGELPFLLY--GTEVHT-----DTNKIEEFLEAVL   83 (86)
T ss_dssp             CSCHHHHHHHHHHHHHT---CCCEEEEECTTSCCHHHHHHCTTCCSSEEEE--TTEEEE-----CHHHHHHHHHHHS
T ss_pred             CCCHhHHHHHHHHHHHC---CCcEEEEeecccccHHHHHHhccCceeEEEE--cccccc-----cHHHHHHHHHHHc
Confidence            37999999988775541   1466677787654 44555556788999985  776544     5677888887754

>d1oyja2 c.47.1.5 (A:2-85) Class tau GST {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class tau GST
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=90.27  E-value=0.66  Score=24.36  Aligned_cols=72  Identities=10%  Similarity=0.046  Sum_probs=45.4

Q ss_pred             EEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcch-hhhhhCCC-cceeEEEEEeCCeEEEEEeCCChHHHHHHH
Q 032502           50 IANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELV-EFSTSWDI-KATPTFFFLKDGQQVDKLVGANKPELQKKV  127 (139)
Q Consensus        50 lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~-~~~~~~~v-~~~Pt~~~~~~g~~~~~~~g~~~~~l~~~i  127 (139)
                      ++.+....|++|++.+-.|....   -.+..+.+|....+ ++.+.-.. ..+|++.  .+|..+.     +...|.+.|
T Consensus         6 l~Ly~~~~Sp~~~rvr~~L~~kg---i~~e~~~v~~~~~~~~~~~~nP~~g~vP~L~--~~g~~l~-----eS~~I~~YL   75 (84)
T d1oyja2           6 LVLLDFWVSPFGQRCRIAMAEKG---LEFEYREEDLGNKSDLLLRSNPVHRKIPVLL--HAGRPVS-----ESLVILQYL   75 (84)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHT---CCCEEEECCTTSCCHHHHHHSTTTCCSCEEE--ETTEEEE-----SHHHHHHHH
T ss_pred             eEEEcCCCChHHHHHHHHHHHcC---CCcEEEEEccCcCCHHHHhhCCCcCcccEEE--ECCceEE-----cHHHHHHHH
Confidence            34456778999999887765542   13566666665433 44443334 4589875  4776543     667788888


Q ss_pred             HHHh
Q 032502          128 AAAV  131 (139)
Q Consensus       128 ~~~~  131 (139)
                      ++..
T Consensus        76 ~e~~   79 (84)
T d1oyja2          76 DDAF   79 (84)
T ss_dssp             HHHC
T ss_pred             HHHC
Confidence            7753

>d1r5aa2 c.47.1.5 (A:2-86) Class delta GST {Mosquito (Anopheles dirus b), isozyme 1-5 [TaxId: 123217]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class delta GST
species: Mosquito (Anopheles dirus b), isozyme 1-5 [TaxId: 123217]

Probab=89.87  E-value=0.72  Score=24.19  Aligned_cols=72  Identities=14%  Similarity=0.140  Sum_probs=47.5

Q ss_pred             EEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcc----hhhhhhCCCcceeEEEEEeCCeEEEEEeCCChHHHHH
Q 032502           50 IANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDEL----VEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQK  125 (139)
Q Consensus        50 lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~----~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~l~~  125 (139)
                      ++.|+.+.|+.|++.+-.+++..   -++.+..+|....    +++.+.-....+|++.  .+|..+.     ....+..
T Consensus         2 ~iLY~~~~S~~~~~v~~~l~e~g---i~~e~~~v~~~~~~~~~~~~~~~nP~g~vP~L~--~~~~~l~-----ES~aI~~   71 (85)
T d1r5aa2           2 TVLYYLPASPPCRSVLLLAKMIG---VELDLKVLNIMEGEQLKPDFVELNPQHCIPTMD--DHGLVLW-----ESRVILS   71 (85)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHTT---CCEEEEECCTTTTGGGSHHHHTTCTTCCSSEEE--ETTEEEE-----CHHHHHH
T ss_pred             EEEEcCCCCHhHHHHHHHHHHcC---CCCEEEEecCCCcccCCHHHHHHHhcCCCCEEE--Eccccee-----cHHHHHH
Confidence            67788999999999987776541   1356667776542    3444444567899876  4766544     5566777


Q ss_pred             HHHHHh
Q 032502          126 KVAAAV  131 (139)
Q Consensus       126 ~i~~~~  131 (139)
                      .|.+.-
T Consensus        72 YL~~~~   77 (85)
T d1r5aa2          72 YLVSAY   77 (85)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            766543

>d1gwca2 c.47.1.5 (A:4-86) Class tau GST {Aegilops tauschii, also known as Triticum tauschii [TaxId: 37682]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class tau GST
species: Aegilops tauschii, also known as Triticum tauschii [TaxId: 37682]

Probab=88.65  E-value=0.87  Score=23.50  Aligned_cols=74  Identities=9%  Similarity=-0.061  Sum_probs=46.3

Q ss_pred             EEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCc-chhhhhhCCCcceeEEEEEeCCeEEEEEeCCChHHHHHHHHH
Q 032502           51 ANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDE-LVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKVAA  129 (139)
Q Consensus        51 v~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~-~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~l~~~i~~  129 (139)
                      -.|....|++|++++-.+....  . .+.++.++... .+++.+.......|.++. .+|..+.     +...|.+.|++
T Consensus         5 kLy~~~~sp~~~rvr~~l~~kg--i-~~e~~~v~~~~~~~~~~~~~~~~~~~p~l~-~dg~~i~-----eS~~I~~YL~e   75 (83)
T d1gwca2           5 KLLGAWPSPFVTRVKLALALKG--L-SYEDVEEDLYKKSELLLKSNPVHKKIPVLI-HNGAPVC-----ESMIILQYIDE   75 (83)
T ss_dssp             EEEECTTCHHHHHHHHHHHHHT--C-CCEEEECCTTSCCHHHHHHSTTTCCSCEEE-ETTEEEE-----SHHHHHHHHHH
T ss_pred             EEEecCCChHHHHHHHHHHHCC--C-CeEEEEEeccchhHHHHHHHhccCCCceee-cCCceEc-----CHHHHHHHHHH
Confidence            3467789999999988776652  1 35666666543 344445555444444333 5676554     66778888887


Q ss_pred             Hhhc
Q 032502          130 AVDS  133 (139)
Q Consensus       130 ~~~~  133 (139)
                      .-..
T Consensus        76 ~~p~   79 (83)
T d1gwca2          76 VFAS   79 (83)
T ss_dssp             HTTT
T ss_pred             HcCC
Confidence            6543

>d1aw9a2 c.47.1.5 (A:2-82) Class phi GST {Maize (Zea mays), type III [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class phi GST
species: Maize (Zea mays), type III [TaxId: 4577]

Probab=88.22  E-value=0.94  Score=23.41  Aligned_cols=70  Identities=10%  Similarity=0.143  Sum_probs=43.1

Q ss_pred             EEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCc----chhhhhhCCCcceeEEEEEeCCeEEEEEeCCChHHHHHH
Q 032502           51 ANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDE----LVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKK  126 (139)
Q Consensus        51 v~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~----~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~l~~~  126 (139)
                      -.++.+.|++|++.+-.+.+..-   .+....+|...    .+++.+......+|+++  .+|..+.     ....|...
T Consensus         4 ~Ly~~~~sp~~~~v~~~l~e~gi---~~e~~~v~~~~~~~~~~~~~~~nP~g~vP~L~--~~~~~l~-----eS~aI~~Y   73 (81)
T d1aw9a2           4 KLYGMPLSPNVVRVATVLNEKGL---DFEIVPVDLTTGAHKQPDFLALNPFGQIPALV--DGDEVLF-----ESRAINRY   73 (81)
T ss_dssp             EEESCTTCHHHHHHHHHHHHTTC---CEEEECCCSSTTSSCCCSGGGTCTTCCSCEEE--ETTEEEE-----SHHHHHHH
T ss_pred             EEEeCCCChhHHHHHHHHHhcCC---CCEEEEecCCCcchhhHHHHHHhhcCeeEEEE--ECCcEEE-----CHHHHHHH
Confidence            45678899999998877765511   24445555432    23444445567899876  3665543     55667766


Q ss_pred             HHHH
Q 032502          127 VAAA  130 (139)
Q Consensus       127 i~~~  130 (139)
                      |.+.
T Consensus        74 L~~~   77 (81)
T d1aw9a2          74 IASK   77 (81)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6654

>d1v2aa2 c.47.1.5 (A:1-83) Class delta GST {Mosquito (Anopheles dirus b), isozyme 1-6 [TaxId: 123217]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class delta GST
species: Mosquito (Anopheles dirus b), isozyme 1-6 [TaxId: 123217]

Probab=87.91  E-value=1  Score=23.38  Aligned_cols=70  Identities=13%  Similarity=0.158  Sum_probs=45.4

Q ss_pred             EEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcc---hhhhhhCCCcceeEEEEEeCCeEEEEEeCCChHHHHHHHH
Q 032502           52 NFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDEL---VEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKVA  128 (139)
Q Consensus        52 ~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~---~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~l~~~i~  128 (139)
                      .|+.+.|++|++++-.+....   -++.+..+|....   .++.+.-....+|+++  .+|..+.     ....|.+.|.
T Consensus         3 LY~~~~Sp~~~~v~~~l~~~g---i~~e~~~v~~~~~~~~~~~~~~nP~g~VP~L~--~~g~~l~-----eS~aI~~YL~   72 (83)
T d1v2aa2           3 YYYSLISPPCQSAILLAKKLG---ITLNLKKTNVHDPVERDALTKLNPQHTIPTLV--DNGHVVW-----ESYAIVLYLV   72 (83)
T ss_dssp             EEECTTCHHHHHHHHHHHHHT---CCCEEEECCTTCHHHHHHHHHHCTTCCSCEEE--ETTEEEE-----SHHHHHHHHH
T ss_pred             EECCCCChHHHHHHHHHHHhC---CCceEEEEeCCCCcchHHHHHHhhccCCCEEE--EccceeE-----cHHHHHHHHH
Confidence            467899999999887665541   1356667776432   3344444567899875  4776554     5567777776


Q ss_pred             HHh
Q 032502          129 AAV  131 (139)
Q Consensus       129 ~~~  131 (139)
                      +..
T Consensus        73 ~~~   75 (83)
T d1v2aa2          73 ETY   75 (83)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            654

>d1z3ea1 c.47.1.12 (A:1-114) Regulatory protein Spx {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ArsC-like
domain: Regulatory protein Spx
species: Bacillus subtilis [TaxId: 1423]

Probab=87.41  E-value=0.37  Score=26.99  Aligned_cols=34  Identities=15%  Similarity=0.393  Sum_probs=26.3

Q ss_pred             EEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcc
Q 032502           50 IANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDEL   88 (139)
Q Consensus        50 lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~   88 (139)
                      +..|+.+.|..|++....|.+-     ++.|..+|+-++
T Consensus         2 i~ly~~~~C~~~rka~~~L~~~-----~i~~~~~d~~~~   35 (114)
T d1z3ea1           2 VTLYTSPSCTSCRKARAWLEEH-----EIPFVERNIFSE   35 (114)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT-----TCCEEEEETTTS
T ss_pred             EEEEcCCCCHHHHHHHHHHHHC-----CCCeEEEeeecc
Confidence            4567899999999999887553     677778888543

>d1xg8a_ c.47.1.17 (A:) Hypothetical protein SA0798 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: YuzD-like
domain: Hypothetical protein SA0798
species: Staphylococcus aureus [TaxId: 1280]

Probab=86.78  E-value=1.5  Score=24.13  Aligned_cols=74  Identities=16%  Similarity=0.335  Sum_probs=50.7

Q ss_pred             CCCChhhhhh------hHhH-HHHHHhCCC--cEEEEEeCCcch--------hhhhhC--CCcceeEEEEEeCCeEEEEE
Q 032502           55 ATWCGPCRMI------APFF-SELSEKYPS--LMFLLVDVDELV--------EFSTSW--DIKATPTFFFLKDGQQVDKL  115 (139)
Q Consensus        55 ~~~C~~C~~~------~~~l-~~~~~~~~~--v~~~~vd~~~~~--------~~~~~~--~v~~~Pt~~~~~~g~~~~~~  115 (139)
                      ..-|+.|..+      ..-| ..+.++||+  +.|..||+...+        +++.+.  .-..+|.+++  +|.++.. 
T Consensus        16 ~~iCASCV~aPSSkeTyEWLqaal~RKyp~~~f~~~YiDi~~~~~~~~~~~~~~ae~I~ede~FYPlV~i--~~eiVaE-   92 (111)
T d1xg8a_          16 DVICASCVNAPTSKDIYDWLQPLLKRKYPNISFKYTYIDITKDNDNLTDHDLQFIERIEQDELFYPLITM--NDEYVAD-   92 (111)
T ss_dssp             SSCCGGGSSSCCHHHHHHHHHHHHHHHCTTSCEEEEEEETTTC---CCHHHHHHHHHHHTTSSCSSEEEE--TTEEEEE-
T ss_pred             cccchhhcCCCCchhHHHHHHHHHhCcCCCCceEEEEEeccCCcccccHHHHHHHHHHhhccceeeEEEE--CCEEeec-
Confidence            3579888754      2223 345788986  888899995322        233332  3467898888  9998876 


Q ss_pred             eCC-ChHHHHHHHHHHhh
Q 032502          116 VGA-NKPELQKKVAAAVD  132 (139)
Q Consensus       116 ~g~-~~~~l~~~i~~~~~  132 (139)
                       |. ....+-++|++.+.
T Consensus        93 -Gnp~LK~I~~~ie~~~~  109 (111)
T d1xg8a_          93 -GYIQTKQITRFIDQKLV  109 (111)
T ss_dssp             -SSCCHHHHHHHHHHHHH
T ss_pred             -CCccHHHHHHHHHHHhc
Confidence             77 88888888888764

>d1e6ba2 c.47.1.5 (A:8-87) Class zeta GST {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class zeta GST
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=85.81  E-value=1.3  Score=22.70  Aligned_cols=68  Identities=6%  Similarity=0.037  Sum_probs=43.3

Q ss_pred             EEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcc----hhhhhhCCCcceeEEEEEeCCeEEEEEeCCChHHHHHHH
Q 032502           52 NFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDEL----VEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKV  127 (139)
Q Consensus        52 ~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~----~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~l~~~i  127 (139)
                      .|..+.|++|++.+-.|+...-   ...++.+|....    .++.+.-....+|+++  .+|..+.     ....|...|
T Consensus         4 Ly~~~~sp~~~kv~~~L~~~gi---~~~~~~i~~~~~~~~~~~~~~~~p~~~vPvL~--~~~~~l~-----eS~aI~~yL   73 (80)
T d1e6ba2           4 LYSYWRSSCAHRVRIALALKGL---DYEYIPVNLLKGDQFDSDFKKINPMGTVPALV--DGDVVIN-----DSFAIIMYL   73 (80)
T ss_dssp             EEECTTCHHHHHHHHHHHHTTC---CCEEEECCTTTTGGGCHHHHHHCTTCCSSEEE--ETTEEEE-----SHHHHHHHH
T ss_pred             EEeCCCChHHHHHHHHHHHhCC---CCEEEEEeccccccccHHHhhcCccccCCEEE--ECCEEEE-----CHHHHHHHH
Confidence            3567889999998877765521   355666666442    3344455577899998  3676544     445666666


Q ss_pred             HH
Q 032502          128 AA  129 (139)
Q Consensus       128 ~~  129 (139)
                      .+
T Consensus        74 ~~   75 (80)
T d1e6ba2          74 DE   75 (80)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>d1ljra2 c.47.1.5 (A:1-79) Class theta GST {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class theta GST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.79  E-value=1.3  Score=22.58  Aligned_cols=69  Identities=16%  Similarity=0.112  Sum_probs=42.4

Q ss_pred             EEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCcc----hhhhhhCCCcceeEEEEEeCCeEEEEEeCCChHHHHHH
Q 032502           51 ANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDEL----VEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKK  126 (139)
Q Consensus        51 v~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~----~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~l~~~  126 (139)
                      -.|+.+.|++|++++-.+.+..-   ++....+|....    +++...-....+|++.  .+|..+.     ....|...
T Consensus         4 ~LY~~~~sp~~r~v~~~l~e~gi---~~e~~~v~~~~~~~~~~~~~~~np~g~vP~L~--d~~~~l~-----ES~aI~~y   73 (79)
T d1ljra2           4 ELFLDLVSQPSRAVYIFAKKNGI---PLELRTVDLVKGQHKSKEFLQINSLGKLPTLK--DGDFILT-----ESSAILIY   73 (79)
T ss_dssp             EEEECTTSHHHHHHHHHHHHTTC---CCEEEECCTTTTGGGSHHHHTTCTTCCSCEEE--ETTEEEE-----CHHHHHHH
T ss_pred             EEeeCCCChHHHHHHHHHHHhCC---CCEEEeeeccccccCCHHHHHhhhhcceeEEE--eCCcEEE-----cHHHHHHH
Confidence            35788999999987766654411   356666666543    2334344567889976  4665543     45566666


Q ss_pred             HHH
Q 032502          127 VAA  129 (139)
Q Consensus       127 i~~  129 (139)
                      |.+
T Consensus        74 L~~   76 (79)
T d1ljra2          74 LSC   76 (79)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            554

>d1jlva2 c.47.1.5 (A:1-84) Class delta GST {Mosquito (Anopheles dirus b), isozyme 1-3 [TaxId: 123217]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class delta GST
species: Mosquito (Anopheles dirus b), isozyme 1-3 [TaxId: 123217]

Probab=84.13  E-value=1.7  Score=22.55  Aligned_cols=70  Identities=16%  Similarity=0.177  Sum_probs=46.0

Q ss_pred             EEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeCCc----chhhhhhCCCcceeEEEEEeCCeEEEEEeCCChHHHHHHH
Q 032502           52 NFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDE----LVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKV  127 (139)
Q Consensus        52 ~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~----~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~l~~~i  127 (139)
                      .++.+.|+.|++.+-.+.+..-   ++....+|...    .+++.+......+|++.  .+|..+.     ....|.+.|
T Consensus         3 LY~~~~S~~~~~v~~~l~e~gi---~~e~~~v~~~~~~~~~~~~~~~nP~g~vP~L~--d~~~~l~-----ES~aI~~yL   72 (84)
T d1jlva2           3 FYYLPGSAPCRAVQMTAAAVGV---ELNLKLTNLMAGEHMKPEFLKINPQHCIPTLV--DNGFALW-----ESRAICTYL   72 (84)
T ss_dssp             EEECTTCHHHHHHHHHHHHTTC---CCEEEECCGGGTGGGSHHHHHHCTTCCSCEEE--ETTEEEE-----SHHHHHHHH
T ss_pred             EEcCCCCHHHHHHHHHHHHcCC---CCEEEEecCCCCccCCHHHHHHhccccCCEEE--ECCEEEE-----cHHHHHHHH
Confidence            4678999999998877755421   35566666543    23555556678899976  4665443     566777777


Q ss_pred             HHHh
Q 032502          128 AAAV  131 (139)
Q Consensus       128 ~~~~  131 (139)
                      .+.-
T Consensus        73 ~~~~   76 (84)
T d1jlva2          73 AEKY   76 (84)
T ss_dssp             HHHH
T ss_pred             HHHc
Confidence            6653

>d1rw1a_ c.47.1.12 (A:) Hypothetical protein PA3664 (YffB) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ArsC-like
domain: Hypothetical protein PA3664 (YffB)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=83.08  E-value=0.57  Score=26.13  Aligned_cols=31  Identities=10%  Similarity=0.239  Sum_probs=24.1

Q ss_pred             EEEEeCCCChhhhhhhHhHHHHHHhCCCcEEEEEeC
Q 032502           50 IANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDV   85 (139)
Q Consensus        50 lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~   85 (139)
                      ++.|+.+.|..|++....|++-     ++.|-.+|+
T Consensus         2 ~~iY~~p~Cs~srka~~~L~~~-----~i~~~~idy   32 (114)
T d1rw1a_           2 YVLYGIKACDTMKKARTWLDEH-----KVAYDFHDY   32 (114)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHT-----TCCEEEEEH
T ss_pred             EEEEECCCChHHHHHHHHHHHc-----CCCeEEEEc
Confidence            5678899999999999877643     666667766