BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032503
(139 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2K8D|A Chain A, Solution Structure Of A Zinc-Binding Methionine Sulfoxide
Reductase
Length = 151
Score = 123 bits (308), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 59/133 (44%), Positives = 83/133 (62%), Gaps = 5/133 (3%)
Query: 5 ADSVQKTEEEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVTK 64
+ ++ +++EWR IL PE FR+ R+ GTEP TG+Y+ L+ DG Y C CGT L+ S TK
Sbjct: 18 VERIELSDDEWREILDPEAFRVARKAGTEPPFTGKYHDLHDDGIYRCICCGTDLFDSETK 77
Query: 65 FDSGCGWPAFYEGLPG---AINRSPDPDGRRTEITCAACGGHMGHVFKGEGFKTPTDERH 121
FDSG GWP+FY+ + + R E+ CA C H+GHVF + PT +R+
Sbjct: 78 FDSGTGWPSFYDVVSEHNIKLREDRSLGMVRCEVLCARCDAHLGHVF--DDGPRPTGKRY 135
Query: 122 CVNSVSIKFIPGD 134
C+NS ++KFIP D
Sbjct: 136 CMNSAALKFIPRD 148
>pdb|3CEZ|A Chain A, Crystal Structure Of Methionine-R-Sulfoxide Reductase From
Burkholderia Pseudomallei
pdb|3CEZ|B Chain B, Crystal Structure Of Methionine-R-Sulfoxide Reductase From
Burkholderia Pseudomallei
pdb|3CXK|A Chain A, 1.7 A Crystal Structure Of Methionine-R-Sulfoxide
Reductase From Burkholderia Pseudomallei:
Crystallization In A Microfluidic Crystal Card.
pdb|3CXK|B Chain B, 1.7 A Crystal Structure Of Methionine-R-Sulfoxide
Reductase From Burkholderia Pseudomallei:
Crystallization In A Microfluidic Crystal Card
Length = 164
Score = 96.7 bits (239), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 49/124 (39%), Positives = 73/124 (58%), Gaps = 4/124 (3%)
Query: 10 KTEEEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDSGC 69
K + E R L+P Q+ + + TEP TGEY G Y+C CGTAL++S K+ SGC
Sbjct: 35 KDDAELRRRLTPMQYEVTQHAATEPPFTGEYTDTEDAGIYHCVVCGTALFESGAKYHSGC 94
Query: 70 GWPAFYEGLPG-AINRSPDPDG--RRTEITCAACGGHMGHVFKGEGFKTPTDERHCVNSV 126
GWP++++ + G I+ D R E+ C CG H+GHVF+ +G + T R+C+NS
Sbjct: 95 GWPSYFKPIDGEVIDEKMDYTHGMTRVEVRCNQCGAHLGHVFE-DGPRDKTGLRYCINSA 153
Query: 127 SIKF 130
++ F
Sbjct: 154 ALNF 157
>pdb|3HCJ|A Chain A, Structure Of Msrb From Xanthomonas Campestris (Oxidized
Form)
pdb|3HCJ|B Chain B, Structure Of Msrb From Xanthomonas Campestris (Oxidized
Form)
Length = 154
Score = 89.4 bits (220), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 51/115 (44%), Positives = 62/115 (53%), Gaps = 5/115 (4%)
Query: 19 LSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGL 78
LS E+ R+L GTE G + DG Y C CG L++S KFDSG GWP+F+
Sbjct: 21 LSDEEQRVLLHHGTEAPFCGVFLDNKLDGVYTCRLCGLPLFRSNAKFDSGTGWPSFFAPY 80
Query: 79 -PGAINRSPDPD--GRRTEITCAACGGHMGHVFKGEGFKTPTDERHCVNSVSIKF 130
P + D RTEI CA C H+GHVF PT ERHC+NSVS+ F
Sbjct: 81 DPAHVREIRDTSYGMIRTEIVCARCDSHLGHVFPDG--PPPTGERHCLNSVSLAF 133
>pdb|2L1U|A Chain A, Structure-Functional Analysis Of Mammalian Msrb2 Protein
Length = 143
Score = 89.0 bits (219), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 52/135 (38%), Positives = 72/135 (53%), Gaps = 12/135 (8%)
Query: 14 EWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPA 73
+W+ L+PEQF + R+KGTE +G Y G Y+C C + L+ S K+ SG GWP+
Sbjct: 3 DWQKKLTPEQFYVTREKGTEAPFSGMYLNNKETGMYHCVCCDSPLFSSEKKYCSGTGWPS 62
Query: 74 FYEGL---------PGAINRSPDPDG-RRTEITCAACGGHMGHVFKGEGFKTPTDERHCV 123
F E G + R G R E+ C C H+GHVF +G K PT +R C+
Sbjct: 63 FSEAYGSKGSDESHTGILRRLDTSLGCPRMEVVCKQCEAHLGHVFP-DGPK-PTGQRFCI 120
Query: 124 NSVSIKFIPGDAPAS 138
NSV++KF P A+
Sbjct: 121 NSVALKFKPSKPAAA 135
>pdb|3HCI|A Chain A, Structure Of Msrb From Xanthomonas Campestris
(Complex-Like Form)
pdb|3HCI|B Chain B, Structure Of Msrb From Xanthomonas Campestris
(Complex-Like Form)
Length = 154
Score = 85.9 bits (211), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 50/115 (43%), Positives = 61/115 (53%), Gaps = 5/115 (4%)
Query: 19 LSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGL 78
LS E+ R+L GTE G + DG Y C CG L++S KFDSG GWP+F+
Sbjct: 21 LSDEEQRVLLHHGTEAPFCGVFLDNKLDGVYTCRLCGLPLFRSNAKFDSGTGWPSFFAPY 80
Query: 79 -PGAINRSPDPD--GRRTEITCAACGGHMGHVFKGEGFKTPTDERHCVNSVSIKF 130
P + D RTEI CA C H+GHVF PT ERH +NSVS+ F
Sbjct: 81 DPAHVREIRDTSYGMVRTEIVCARCDSHLGHVFPDG--PPPTGERHSLNSVSLAF 133
>pdb|1L1D|A Chain A, Crystal Structure Of The C-Terminal Methionine Sulfoxide
Reductase Domain (Msrb) Of N. Gonorrhoeae Pilb
pdb|1L1D|B Chain B, Crystal Structure Of The C-Terminal Methionine Sulfoxide
Reductase Domain (Msrb) Of N. Gonorrhoeae Pilb
Length = 152
Score = 82.0 bits (201), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 69/132 (52%), Gaps = 4/132 (3%)
Query: 4 AADSVQKTEEEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVT 63
AA + ++ E + L+ EQ+++ + TE + EY+ L+ G Y G L+ S
Sbjct: 5 AATYKKPSDAELKRTLTEEQYQVTQNSATEYAFSHEYDHLFKPGIYVDVVSGEPLFSSAD 64
Query: 64 KFDSGCGWPAFYEGLPGAINRSPDP---DGRRTEITCAACGGHMGHVFKGEGFKTPTDER 120
K+DSGCGWP+F + D + RRTE+ A H+GHVF +G + R
Sbjct: 65 KYDSGCGWPSFTRPIDAKSVTEHDDFSFNXRRTEVRSRAADSHLGHVFP-DGPRDKGGLR 123
Query: 121 HCVNSVSIKFIP 132
+C+N S+KFIP
Sbjct: 124 YCINGASLKFIP 135
>pdb|3HCG|A Chain A, Structure Of The C-Terminal Domain (Msrb) Of Neisseria
Meningitidis Pilb (Reduced Form)
pdb|3HCG|B Chain B, Structure Of The C-Terminal Domain (Msrb) Of Neisseria
Meningitidis Pilb (Reduced Form)
pdb|3HCG|C Chain C, Structure Of The C-Terminal Domain (Msrb) Of Neisseria
Meningitidis Pilb (Reduced Form)
pdb|3HCG|D Chain D, Structure Of The C-Terminal Domain (Msrb) Of Neisseria
Meningitidis Pilb (Reduced Form)
Length = 146
Score = 81.6 bits (200), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 66/125 (52%), Gaps = 4/125 (3%)
Query: 11 TEEEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCG 70
++ E + L+ EQ+++ + TE + EY+ L+ G Y G L+ S K+DSGCG
Sbjct: 6 SDAELKRTLTEEQYQVTQNSATEYAFSHEYDHLFKPGIYVDVVSGEPLFSSADKYDSGCG 65
Query: 71 WPAFYEGLPGAINRSPDP---DGRRTEITCAACGGHMGHVFKGEGFKTPTDERHCVNSVS 127
WP+F + D + RRTE+ A H+GHVF +G + R+C+N S
Sbjct: 66 WPSFTRPIDAKSVTEHDDFSYNXRRTEVRSHAADSHLGHVFP-DGPRDKGGLRYCINGAS 124
Query: 128 IKFIP 132
+KFIP
Sbjct: 125 LKFIP 129
>pdb|3HCH|A Chain A, Structure Of The C-Terminal Domain (Msrb) Of Neisseria
Meningitidis Pilb (Complex With Substrate)
pdb|3HCH|B Chain B, Structure Of The C-Terminal Domain (Msrb) Of Neisseria
Meningitidis Pilb (Complex With Substrate)
Length = 146
Score = 75.5 bits (184), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 64/125 (51%), Gaps = 4/125 (3%)
Query: 11 TEEEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCG 70
++ E + L+ EQ+++ + TE + EY+ L+ G Y G L+ S K+DSG G
Sbjct: 6 SDAELKRTLTEEQYQVTQNSATEYAFSHEYDHLFKPGIYVDVVSGEPLFSSADKYDSGSG 65
Query: 71 WPAFYEGLPGAINRSPDP---DGRRTEITCAACGGHMGHVFKGEGFKTPTDERHCVNSVS 127
WP+F + D + RRTE+ A H+GHVF +G + R+ +N S
Sbjct: 66 WPSFTRPIDAKSVTEHDDFSYNMRRTEVRSHAADSHLGHVFP-DGPRDKGGLRYSINGAS 124
Query: 128 IKFIP 132
+KFIP
Sbjct: 125 LKFIP 129
>pdb|3E0O|A Chain A, Crystal Structure Of Msrb
pdb|3E0O|B Chain B, Crystal Structure Of Msrb
pdb|3E0O|C Chain C, Crystal Structure Of Msrb
pdb|3E0O|D Chain D, Crystal Structure Of Msrb
pdb|3E0O|E Chain E, Crystal Structure Of Msrb
pdb|3E0O|F Chain F, Crystal Structure Of Msrb
Length = 144
Score = 72.0 bits (175), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 61/125 (48%), Gaps = 6/125 (4%)
Query: 11 TEEEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCG 70
+EE L+ Q+ + + GTEP EY +G Y G L+ S KFDS CG
Sbjct: 5 NKEEKIKSLNRMQYEVTQNNGTEPPFQNEYWDHKEEGLYVDIVSGKPLFTSKDKFDSQCG 64
Query: 71 WPAFYEGLPGAINRSPDPDG--RRTEITCAACGGHMGHVFK-GEGFKTPTDERHCVNSVS 127
WP+F + + + D RTE+ H+GHVF G G P R+C+NS +
Sbjct: 65 WPSFTKPIEEEVEEKLDTSHGMIRTEVRSRTADSHLGHVFNDGPG---PNGLRYCINSAA 121
Query: 128 IKFIP 132
++F+P
Sbjct: 122 LRFVP 126
>pdb|3E0M|A Chain A, Crystal Structure Of Fusion Protein Of Msra And Msrb
pdb|3E0M|B Chain B, Crystal Structure Of Fusion Protein Of Msra And Msrb
pdb|3E0M|C Chain C, Crystal Structure Of Fusion Protein Of Msra And Msrb
pdb|3E0M|D Chain D, Crystal Structure Of Fusion Protein Of Msra And Msrb
Length = 313
Score = 72.0 bits (175), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 70/137 (51%), Gaps = 4/137 (2%)
Query: 1 MTAAADSVQKTEEEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYK 60
+ AA+ + ++E +A LS E +R+ ++ TE T Y++ + +G Y G L+
Sbjct: 162 LIDAANYEKPSQEVLKASLSEESYRVTQEAATEAPFTNAYDQTFEEGIYVDITTGEPLFF 221
Query: 61 SVTKFDSGCGWPAFYEGLPGAI---NRSPDPDGRRTEITCAACGGHMGHVFKGEGFKTPT 117
+ KF SGCGWP+F L + + R E+ + H+GHVF +G +
Sbjct: 222 AKDKFASGCGWPSFSRPLSKELIHYYKDLSHGMERIEVRSRSGSAHLGHVFT-DGPRELG 280
Query: 118 DERHCVNSVSIKFIPGD 134
R+C+NS S++F+ D
Sbjct: 281 GLRYCINSASLRFVAKD 297
>pdb|2KZN|A Chain A, Solution Nmr Structure Of Peptide Methionine Sulfoxide
Reductase Msrb From Bacillus Subtilis, Northeast
Structural Genomics Consortium Target Sr10
Length = 151
Score = 72.0 bits (175), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 61/125 (48%), Gaps = 6/125 (4%)
Query: 11 TEEEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCG 70
+EE L+ Q+ + + GTEP EY +G Y G L+ S KFDS CG
Sbjct: 4 NKEEKIKSLNRMQYEVTQNNGTEPPFQNEYWDHKEEGLYVDIVSGKPLFTSKDKFDSQCG 63
Query: 71 WPAFYEGLPGAINRSPDPDG--RRTEITCAACGGHMGHVFK-GEGFKTPTDERHCVNSVS 127
WP+F + + + D RTE+ H+GHVF G G P R+C+NS +
Sbjct: 64 WPSFTKPIEEEVEEKLDTSHGMIRTEVRSRTADSHLGHVFNDGPG---PNGLRYCINSAA 120
Query: 128 IKFIP 132
++F+P
Sbjct: 121 LRFVP 125
>pdb|3MAO|A Chain A, Crystal Structure Of Human Methionine-R-Sulfoxide
Reductase B1 (Msrb1)
Length = 105
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 40 YNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPGAINRSPDPDGRRTE---IT 96
+ + G Y CA CG L+ S +K+ WPAF E + A + + P+ R+E ++
Sbjct: 5 FQNHFEPGVYVCAKCGYELFSSRSKYAHSSPWPAFTETI-HADSVAKRPEHNRSEALKVS 63
Query: 97 CAACGGHMGHVFKGEGFKTPTDERHCVNSVSIKFIP 132
C CG +GH F +G K P R + S S+KF+P
Sbjct: 64 CGKCGNGLGHEFLNDGPK-PGQSRFSIFSSSLKFVP 98
>pdb|2KV1|A Chain A, Insights Into Function, Catalytic Mechanism And Fold
Evolution Of Mouse Selenoprotein Methionine Sulfoxide
Reductase B1 Through Structural Analysis
Length = 124
Score = 55.5 bits (132), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 49/95 (51%), Gaps = 3/95 (3%)
Query: 40 YNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGL-PGAINRSPDPDG-RRTEITC 97
+ + G Y CA C L+ S +K+ WPAF E + P ++ + P+ + +++C
Sbjct: 12 FQNHFEPGVYVCAKCSYELFSSHSKYAHSSPWPAFTETIHPDSVTKCPEKNRPEALKVSC 71
Query: 98 AACGGHMGHVFKGEGFKTPTDERHCVNSVSIKFIP 132
CG +GH F +G K R C+ S S+KF+P
Sbjct: 72 GKCGNGLGHEFLNDGPKR-GQSRFCIFSSSLKFVP 105
>pdb|4AP9|A Chain A, Crystal Structure Of Phosphoserine Phosphatase From
T.Onnurineus In Complex With Ndsb-201
pdb|4AP9|B Chain B, Crystal Structure Of Phosphoserine Phosphatase From
T.Onnurineus In Complex With Ndsb-201
pdb|4AP9|C Chain C, Crystal Structure Of Phosphoserine Phosphatase From
T.Onnurineus In Complex With Ndsb-201
pdb|4AP9|D Chain D, Crystal Structure Of Phosphoserine Phosphatase From
T.Onnurineus In Complex With Ndsb-201
Length = 201
Score = 27.3 bits (59), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 6/66 (9%)
Query: 16 RAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFY 75
RAI +F+ +R + R GE+ K + DGF G G A K + D G A
Sbjct: 123 RAIFEDGKFQGIRLR---FRDKGEFLKRFRDGFILAXGDGYADAKXFERADXGI---AVG 176
Query: 76 EGLPGA 81
+PGA
Sbjct: 177 REIPGA 182
>pdb|4B6J|A Chain A, Crystal Structure Of Phosphoserine Phosphatase From T.
Onnurineus
pdb|4B6J|B Chain B, Crystal Structure Of Phosphoserine Phosphatase From T.
Onnurineus
pdb|4B6J|C Chain C, Crystal Structure Of Phosphoserine Phosphatase From T.
Onnurineus
pdb|4B6J|D Chain D, Crystal Structure Of Phosphoserine Phosphatase From T.
Onnurineus
Length = 201
Score = 26.9 bits (58), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 6/66 (9%)
Query: 16 RAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFY 75
RAI +F+ +R + R GE+ K + DGF G G A K + D G A
Sbjct: 123 RAIFEDGKFQGIRLR---FRDKGEFLKRFRDGFILAMGDGYADAKMFERADMGI---AVG 176
Query: 76 EGLPGA 81
+PGA
Sbjct: 177 REIPGA 182
>pdb|1HZU|A Chain A, Domain Swing Upon His To Ala Mutation In Nitrite
Reductase Of Pseudomonas Aeruginosa
Length = 543
Score = 26.6 bits (57), Expect = 5.1, Method: Composition-based stats.
Identities = 15/58 (25%), Positives = 24/58 (41%)
Query: 6 DSVQKTEEEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVT 63
D ++ E+ A + + ++R G E+N+ F CAGC L K T
Sbjct: 2 DDMKAAEQYQGAASAVDPAHVVRTNGAPDMSESEFNEAKQIYFQRCAGCHGVLRKGAT 59
>pdb|1HZV|A Chain A, Domain Swing Upon His To Ala Mutation In Nitrite
Reductase Of Pseudomonas Aeruginosa
Length = 543
Score = 26.6 bits (57), Expect = 5.1, Method: Composition-based stats.
Identities = 15/58 (25%), Positives = 24/58 (41%)
Query: 6 DSVQKTEEEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVT 63
D ++ E+ A + + ++R G E+N+ F CAGC L K T
Sbjct: 2 DDMKAAEQYQGAASAVDPAHVVRTNGAPDMSESEFNEAKQIYFQRCAGCHGVLRKGAT 59
>pdb|1NIR|A Chain A, Oxydized Nitrite Reductase From Pseudomonas Aeruginosa
pdb|1NIR|B Chain B, Oxydized Nitrite Reductase From Pseudomonas Aeruginosa
pdb|1BL9|A Chain A, Conformational Changes Occurring Upon Reduction In
Nitrite Reductase From Pseudomonas Aeruginosa
pdb|1BL9|B Chain B, Conformational Changes Occurring Upon Reduction In
Nitrite Reductase From Pseudomonas Aeruginosa
pdb|1NNO|A Chain A, Conformational Changes Occurring Upon No Binding In
Nitrite Reductase From Pseudomonas Aeruginosa
pdb|1NNO|B Chain B, Conformational Changes Occurring Upon No Binding In
Nitrite Reductase From Pseudomonas Aeruginosa
pdb|1N15|A Chain A, Following The C Heme Reduction In Nitrite Reductase From
Pseudomonas Aeruginosa
pdb|1N15|B Chain B, Following The C Heme Reduction In Nitrite Reductase From
Pseudomonas Aeruginosa
pdb|1N50|A Chain A, Following The C Heme Reduction In Nitrite Reductase From
Pseudomonas Aeruginosa
pdb|1N50|B Chain B, Following The C Heme Reduction In Nitrite Reductase From
Pseudomonas Aeruginosa
pdb|1N90|A Chain A, Following The C Heme Reduction In Nitrite Reductase From
Pseudomonas Aeruginosa
pdb|1N90|B Chain B, Following The C Heme Reduction In Nitrite Reductase From
Pseudomonas Aeruginosa
pdb|1GJQ|A Chain A, Pseudomonas Aeruginosa Cd1 Nitrite Reductase Reduced
Cyanide Complex
pdb|1GJQ|B Chain B, Pseudomonas Aeruginosa Cd1 Nitrite Reductase Reduced
Cyanide Complex
Length = 543
Score = 26.6 bits (57), Expect = 5.1, Method: Composition-based stats.
Identities = 15/58 (25%), Positives = 24/58 (41%)
Query: 6 DSVQKTEEEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVT 63
D ++ E+ A + + ++R G E+N+ F CAGC L K T
Sbjct: 2 DDMKAAEQYQGAASAVDPAHVVRTNGAPDMSESEFNEAKQIYFQRCAGCHGVLRKGAT 59
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.136 0.435
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,919,811
Number of Sequences: 62578
Number of extensions: 212305
Number of successful extensions: 441
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 388
Number of HSP's gapped (non-prelim): 31
length of query: 139
length of database: 14,973,337
effective HSP length: 89
effective length of query: 50
effective length of database: 9,403,895
effective search space: 470194750
effective search space used: 470194750
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 46 (22.3 bits)