Query 032503
Match_columns 139
No_of_seqs 182 out of 1084
Neff 4.6
Searched_HMMs 29240
Date Tue Mar 26 00:39:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032503.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032503hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3e0o_A Peptide methionine sulf 100.0 5.1E-73 1.8E-77 434.4 10.7 125 8-134 2-128 (144)
2 2k8d_A Peptide methionine sulf 100.0 2.1E-72 7.2E-77 433.7 7.9 128 6-135 19-149 (151)
3 3hcg_A Peptide methionine sulf 100.0 3.8E-72 1.3E-76 430.5 9.0 126 8-134 3-131 (146)
4 3cxk_A Methionine-R-sulfoxide 100.0 2E-71 7E-76 432.9 13.1 128 6-135 31-162 (164)
5 3hcj_A MSRB, peptide methionin 100.0 2E-70 6.7E-75 423.8 11.7 124 11-136 13-139 (154)
6 2l1u_A MSRB2, methionine-R-sul 100.0 3.5E-71 1.2E-75 423.9 6.4 122 13-136 2-133 (143)
7 3e0m_A Peptide methionine sulf 100.0 3.1E-65 1.1E-69 430.6 12.0 126 8-134 169-297 (313)
8 2kv1_A Methionine-R-sulfoxide 100.0 4.7E-57 1.6E-61 338.8 10.6 103 34-137 5-110 (124)
9 3mao_A Methionine-R-sulfoxide 100.0 4.9E-57 1.7E-61 330.6 9.8 99 39-138 4-104 (105)
10 2kao_A Methionine-R-sulfoxide 100.0 2.7E-56 9.3E-61 334.6 10.8 100 36-136 7-109 (124)
11 1pft_A TFIIB, PFTFIIBN; N-term 84.1 1 3.5E-05 27.2 3.3 32 43-76 19-50 (50)
12 1dl6_A Transcription factor II 82.2 0.97 3.3E-05 28.7 2.7 32 43-76 25-56 (58)
13 3qt1_I DNA-directed RNA polyme 62.7 6.5 0.00022 28.8 3.4 20 90-109 88-107 (133)
14 3gox_A Restriction endonucleas 51.8 14 0.00049 29.2 3.8 66 17-109 117-183 (200)
15 3h0g_I DNA-directed RNA polyme 49.6 8.2 0.00028 27.2 2.0 20 90-109 68-87 (113)
16 4rxn_A Rubredoxin; electron tr 49.2 13 0.00045 23.4 2.7 41 48-103 3-45 (54)
17 3tf7_C 42F3 MUT7 SCFV (42F3 al 49.2 6.5 0.00022 29.0 1.4 23 43-65 219-244 (256)
18 1twf_I B12.6, DNA-directed RNA 48.9 4.9 0.00017 28.7 0.7 59 46-109 24-87 (122)
19 3fac_A Putative uncharacterize 47.1 21 0.00071 24.5 3.8 32 92-129 65-96 (118)
20 2znx_A SCFV; fluorotryptohpan, 46.1 8.5 0.00029 28.1 1.7 22 43-64 209-230 (242)
21 1yk4_A Rubredoxin, RD; electro 46.0 16 0.00055 22.7 2.7 19 48-73 2-20 (52)
22 2v3b_B Rubredoxin 2, rubredoxi 45.9 16 0.00054 22.9 2.7 19 48-73 3-21 (55)
23 1e8j_A Rubredoxin; iron-sulfur 44.3 21 0.00072 22.1 3.1 18 48-72 3-20 (52)
24 3k7a_M Transcription initiatio 44.1 11 0.00037 30.9 2.2 32 43-76 37-68 (345)
25 1v65_A Riken cDNA 2610044O15; 43.8 32 0.0011 19.5 3.8 27 2-29 9-35 (64)
26 2kn9_A Rubredoxin; metalloprot 42.7 31 0.0011 23.5 3.9 21 45-72 24-44 (81)
27 1s24_A Rubredoxin 2; electron 39.5 20 0.00069 24.7 2.6 42 46-102 33-76 (87)
28 1dx8_A Rubredoxin; electron tr 37.9 26 0.0009 22.9 2.9 42 47-103 6-49 (70)
29 3uzq_A Anti-dengue MAB 4E11; d 34.9 16 0.00056 26.6 1.7 22 43-64 216-239 (253)
30 2jso_A Polymyxin resistance pr 34.9 13 0.00045 25.9 1.1 23 106-128 39-61 (88)
31 3omz_A Human vdelta1 gamma del 34.7 14 0.00048 27.0 1.3 22 43-64 218-245 (259)
32 2atp_B T-cell surface glycopro 33.8 17 0.00057 23.6 1.5 12 43-54 88-99 (115)
33 1tvd_A T cell receptor, ES204 32.8 18 0.00062 23.5 1.5 11 44-54 86-96 (116)
34 2k3r_A Ribonuclease P protein 31.4 40 0.0014 24.1 3.3 38 50-104 62-99 (123)
35 1x0t_A Ribonuclease P protein 30.9 41 0.0014 23.8 3.2 39 50-105 67-105 (120)
36 2apo_B Ribosome biogenesis pro 30.9 18 0.0006 23.4 1.1 12 51-62 21-32 (60)
37 1pew_A JTO2, A lambda-6 type i 30.5 20 0.00068 23.1 1.4 10 44-53 82-91 (109)
38 1twf_L ABC10-alpha, DNA-direct 30.2 30 0.001 22.7 2.2 36 20-57 2-37 (70)
39 1vq8_1 50S ribosomal protein L 29.5 25 0.00084 22.7 1.6 27 48-74 17-44 (57)
40 2aus_D NOP10, ribosome biogene 29.4 23 0.00078 22.9 1.5 12 51-62 20-31 (60)
41 1eeq_A Kappa-4 immunoglobulin 28.7 23 0.0008 22.9 1.5 11 44-54 87-97 (114)
42 2q20_A VK1 O18/O8 germline lig 27.9 27 0.00092 22.4 1.7 11 44-54 83-93 (109)
43 3gkz_A Anti-methamphetamine si 27.8 24 0.00083 25.6 1.6 22 43-64 221-244 (257)
44 3k1f_M Transcription initiatio 27.8 7.3 0.00025 30.8 -1.3 33 43-77 37-69 (197)
45 4a18_A RPL37, ribosomal protei 27.7 24 0.00081 24.9 1.4 27 48-74 16-42 (94)
46 2rqx_A PMRD, polymyxin B resis 27.5 14 0.00047 25.8 0.1 21 106-126 38-58 (89)
47 1qyp_A RNA polymerase II; tran 27.5 26 0.00088 21.4 1.4 17 90-106 11-27 (57)
48 3iz5_l 60S ribosomal protein L 27.1 23 0.0008 24.9 1.3 26 48-73 16-41 (94)
49 2z35_A T-cell receptor alpha-c 26.4 25 0.00084 22.7 1.3 12 43-54 81-92 (112)
50 3j21_e 50S ribosomal protein L 26.2 30 0.001 22.7 1.6 24 50-73 19-43 (62)
51 2lo3_A SAGA-associated factor 25.9 21 0.00072 21.9 0.8 14 48-61 17-30 (44)
52 3w0f_A Endonuclease 8-like 3; 25.4 40 0.0014 27.6 2.6 70 9-106 212-285 (287)
53 1j05_L T84.66 antibody, anti-C 25.1 30 0.001 22.2 1.5 12 43-54 84-95 (111)
54 2zkr_2 60S ribosomal protein L 24.8 36 0.0012 24.0 1.9 32 47-78 15-46 (97)
55 1sjv_A R9; camelids antibody, 24.5 40 0.0014 21.8 2.0 12 44-55 88-99 (114)
56 2i24_N NEW antigen receptor PB 24.2 20 0.0007 24.2 0.5 12 42-53 74-85 (121)
57 1x6m_A GFA, glutathione-depend 24.0 36 0.0012 25.7 1.9 18 45-62 95-112 (196)
58 1x9q_A SCFV, 4M5.3 anti-fluore 23.9 29 0.00098 25.6 1.4 21 44-64 242-264 (268)
59 1dxg_A Desulforedoxin; non-hem 23.8 36 0.0012 19.2 1.5 15 45-59 3-17 (36)
60 2e27_L Anti-ciguatoxin antibod 23.6 27 0.00093 23.2 1.1 12 43-54 82-93 (119)
61 1qfw_M FV, antibody (anti beta 23.3 32 0.0011 22.0 1.4 11 44-54 81-91 (108)
62 2m0f_A Zinc finger and BTB dom 22.5 26 0.00089 16.2 0.6 10 48-57 2-11 (29)
63 3r8b_B G5-8, enterotoxin type 21.7 35 0.0012 22.8 1.4 10 44-53 89-98 (125)
64 3umt_A SCFV heavy chain and li 21.4 34 0.0012 24.9 1.3 12 43-54 217-228 (256)
65 3m45_A Cell adhesion molecule 21.1 34 0.0012 21.0 1.1 13 43-55 80-92 (108)
66 3juy_B 3B3 single chain varian 20.7 35 0.0012 24.8 1.2 20 43-62 229-250 (256)
67 2xt1_B Camelid VHH 9; viral pr 20.5 43 0.0015 22.3 1.6 13 42-54 89-101 (121)
68 3s35_X Vascular endothelial gr 20.4 35 0.0012 21.8 1.1 12 43-54 83-94 (122)
69 3udw_C Poliovirus receptor; PV 20.4 36 0.0012 21.2 1.1 12 43-54 88-99 (118)
70 4f87_A Plycb; lysin, bacteriop 20.2 71 0.0024 20.9 2.5 38 92-130 3-40 (72)
71 1i8k_A Epidermal growth factor 20.0 35 0.0012 21.8 1.0 12 43-54 80-91 (107)
No 1
>3e0o_A Peptide methionine sulfoxide reductase MSRB; oxidoreductase; 2.60A {Bacillus subtilis} SCOP: b.88.1.3 PDB: 1xm0_A 2kzn_A
Probab=100.00 E-value=5.1e-73 Score=434.36 Aligned_cols=125 Identities=33% Similarity=0.620 Sum_probs=121.1
Q ss_pred CCCCHHHHHhcCCHHHHHHhhhCCCCCCCccCCCccccceEEEeccCCcccccCCccccCCCCCccCCcccCCCeEEccC
Q 032503 8 VQKTEEEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPGAINRSPD 87 (139)
Q Consensus 8 ~~~~~~ewr~~Ltp~qy~V~r~~gTE~pfsg~y~~~~~~G~Y~C~~Cg~pLF~S~~Kf~Sg~GWPSF~~~i~~~v~~~~D 87 (139)
+.++++|||++|||+||+|||++||||||||+||+++++|+|+|++||+|||+|++|||||||||||++||+++|+++.|
T Consensus 2 ~~~s~~ew~~~Ltp~qy~V~r~~gTE~pftg~y~~~~~~G~Y~C~~Cg~pLF~S~~KfdSg~GWPSF~~pi~~~v~~~~D 81 (144)
T 3e0o_A 2 MAYNKEEKIKSLNRMQYEVTQNNGTEPPFQNEYWDHKEEGLYVDIVSGKPLFTSKDKFDSQCGWPSFTKPIEEEVEEKLD 81 (144)
T ss_dssp CHHHHHHHHHHSCHHHHHHHHHCCCCCTTCSTTSSCCCSEEEEETTTCCEEEETTTBCCCTTSSCEESCCSTTTEEEEEE
T ss_pred CCCCHHHHHhhCCHHHHHHHHhcCCCCCCcCCCCCcCCCEEEEeCCCCcccccCcccccCCCCCcccCchhccceEEeec
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999889999999
Q ss_pred CC--cceeEEEecCCCCCcccccCCCCCCCCCCceeeeccceeeeeeCC
Q 032503 88 PD--GRRTEITCAACGGHMGHVFKGEGFKTPTDERHCVNSVSIKFIPGD 134 (139)
Q Consensus 88 ~s--m~RtEv~C~~Cg~HLGHVF~~DG~p~ptg~RyCINs~sL~F~p~~ 134 (139)
.+ |+||||+|++||+||||||+ || |+|||+|||||||||+|+|++
T Consensus 82 ~s~gm~RtEV~C~~Cg~HLGHVF~-DG-P~ptg~RyCiNS~sL~F~p~~ 128 (144)
T 3e0o_A 82 TSHGMIRTEVRSRTADSHLGHVFN-DG-PGPNGLRYCINSAALRFVPKH 128 (144)
T ss_dssp CCTTSCEEEEEETTTCCEEEEEES-CC-SSTTCCEEEECGGGEEEEEHH
T ss_pred CCCCceEEEEEcCCCCCccCCccC-CC-CCCCCCEeeeceeeEeeeech
Confidence 98 99999999999999999998 88 689999999999999999975
No 2
>2k8d_A Peptide methionine sulfoxide reductase MSRB; thermophilic, Zn binding, metal-binding, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=100.00 E-value=2.1e-72 Score=433.75 Aligned_cols=128 Identities=48% Similarity=0.983 Sum_probs=122.9
Q ss_pred CCCCCCHHHHHhcCCHHHHHHhhhCCCCCCCccCCCccccceEEEeccCCcccccCCccccCCCCCccCCcccCC-CeEE
Q 032503 6 DSVQKTEEEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPG-AINR 84 (139)
Q Consensus 6 ~~~~~~~~ewr~~Ltp~qy~V~r~~gTE~pfsg~y~~~~~~G~Y~C~~Cg~pLF~S~~Kf~Sg~GWPSF~~~i~~-~v~~ 84 (139)
.++.++++|||++|||+||+|||++||||||||+||+++++|+|+|++||+|||+|++|||||||||||++||++ +|++
T Consensus 19 ~~~~~s~~ewr~~Ltp~qy~V~r~~gTE~pftg~y~~~~~~G~Y~C~~Cg~pLF~S~~KFdSg~GWPSF~~pi~~~~V~~ 98 (151)
T 2k8d_A 19 ERIELSDDEWREILDPEAFRVARKAGTEPPFTGKYHDLHDDGIYRCICCGTDLFDSETKFDSGTGWPSFYDVVSEHNIKL 98 (151)
T ss_dssp ECSCCCTTGGGTTSCTTHHHHHHHTTCSSSCSCCCCCCCSCSEEEETTTTEEEEEGGGSCCSTTCCSEESCCSCTTSEEC
T ss_pred cccCCCHHHHHhhCCHHHHHHHHhcCCCCCCccCCcCCCCCEEEEecCCCCcccCCcccccCCCCCcccCcccCCCceEE
Confidence 457899999999999999999999999999999999999999999999999999999999999999999999965 9999
Q ss_pred ccCCC--cceeEEEecCCCCCcccccCCCCCCCCCCceeeeccceeeeeeCCC
Q 032503 85 SPDPD--GRRTEITCAACGGHMGHVFKGEGFKTPTDERHCVNSVSIKFIPGDA 135 (139)
Q Consensus 85 ~~D~s--m~RtEv~C~~Cg~HLGHVF~~DG~p~ptg~RyCINs~sL~F~p~~~ 135 (139)
++|.+ |.||||+|++||+||||||+ || |+|||+|||||||||+|+|.++
T Consensus 99 ~~D~s~gm~RtEV~C~~Cg~HLGHVF~-DG-P~ptg~RyCINS~sL~F~p~~~ 149 (151)
T 2k8d_A 99 REDRSLGMVRCEVLCARCDAHLGHVFD-DG-PRPTGKRYCMNSAALKFIPRDQ 149 (151)
T ss_dssp CCCBTTSSCEEEEEETTEEEEEEEEEE-CS-SSSSCEEEEECSTTEEEECSSS
T ss_pred eeCCCCCceEEEEEeCCCCCcCCcccC-CC-CCCCCCEEeeceeeecccchHH
Confidence 99998 99999999999999999998 88 7899999999999999999754
No 3
>3hcg_A Peptide methionine sulfoxide reductase MSRA/MSRB; PILB, methionine sulfoxide reductase B, reduced form, disulfide bond; 1.82A {Neisseria meningitidis serogroup A} SCOP: b.88.1.3 PDB: 3hch_A* 1l1d_A
Probab=100.00 E-value=3.8e-72 Score=430.46 Aligned_cols=126 Identities=34% Similarity=0.655 Sum_probs=120.3
Q ss_pred CCCCHHHHHhcCCHHHHHHhhhCCCCCCCccCCCccccceEEEeccCCcccccCCccccCCCCCccCCcccC-CCeEEcc
Q 032503 8 VQKTEEEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGLP-GAINRSP 86 (139)
Q Consensus 8 ~~~~~~ewr~~Ltp~qy~V~r~~gTE~pfsg~y~~~~~~G~Y~C~~Cg~pLF~S~~Kf~Sg~GWPSF~~~i~-~~v~~~~ 86 (139)
..++++|||++|||+||+|||++||||||||+||+++++|+|+|++||+|||+|++|||||||||||++||+ ++|+++.
T Consensus 3 ~~~s~~ewr~~Ltp~qy~V~r~~gTE~pftg~y~~~~~~G~Y~C~~Cg~pLF~S~~KFdSg~GWPSF~~pi~~~~v~~~~ 82 (146)
T 3hcg_A 3 KKPSDAELKRTLTEEQYQVTQNSATEYAFSHEYDHLFKPGIYVDVVSGEPLFSSADKYDSGCGWPSFTRPIDAKSVTEHD 82 (146)
T ss_dssp CCCCHHHHHHHSBHHHHHHHHHCCCCCTTCSGGGGCCCSEEEEETTTCCEEEEGGGEECCSSSSCEESSCSSGGGEEEEE
T ss_pred CCCCHHHHHhhCCHHHHHHHHHcCCCCCCCCCCcCCCCCEEEEecCCCcccccCcccccCCCCChhhccccCCCceEEee
Confidence 457999999999999999999999999999999999999999999999999999999999999999999995 5999999
Q ss_pred CCC--cceeEEEecCCCCCcccccCCCCCCCCCCceeeeccceeeeeeCC
Q 032503 87 DPD--GRRTEITCAACGGHMGHVFKGEGFKTPTDERHCVNSVSIKFIPGD 134 (139)
Q Consensus 87 D~s--m~RtEv~C~~Cg~HLGHVF~~DG~p~ptg~RyCINs~sL~F~p~~ 134 (139)
|.+ |+||||+|++||+||||||+ |||++|||+|||||||||+|+|++
T Consensus 83 D~s~gm~RtEV~C~~Cg~HLGHVF~-DGP~~~tg~RyCiNS~sL~F~p~~ 131 (146)
T 3hcg_A 83 DFSYNMRRTEVRSHAADSHLGHVFP-DGPRDKGGLRYCINGASLKFIPLE 131 (146)
T ss_dssp EEETTEEEEEEEETTTCCEEEEEES-CSCGGGTSCEEEECGGGEEEEEHH
T ss_pred cCCCCcEEEEEEeCCCCCccCceeC-CCCCCCCCCEEeeeeEEEEeeehH
Confidence 998 99999999999999999998 895557999999999999999974
No 4
>3cxk_A Methionine-R-sulfoxide reductase; structural genomics, MSRB, oxidoreductase, MIC labcard, PSI-2, protein structure initiative; 1.70A {Burkholderia pseudomallei strain} PDB: 3cez_A
Probab=100.00 E-value=2e-71 Score=432.88 Aligned_cols=128 Identities=38% Similarity=0.793 Sum_probs=122.4
Q ss_pred CCCCCCHHHHHhcCCHHHHHHhhhCCCCCCCccCCCccccceEEEeccCCcccccCCccccCCCCCccCCcccCC-CeEE
Q 032503 6 DSVQKTEEEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPG-AINR 84 (139)
Q Consensus 6 ~~~~~~~~ewr~~Ltp~qy~V~r~~gTE~pfsg~y~~~~~~G~Y~C~~Cg~pLF~S~~Kf~Sg~GWPSF~~~i~~-~v~~ 84 (139)
.++.++++|||++|||+||+|||++|||+||||+||+++++|+|+|++||+|||+|++|||||||||||++||++ +|++
T Consensus 31 ~~~~~s~~ewr~~Ltp~qy~V~r~~GTErpftg~y~~~~~~GiY~C~~Cg~pLF~S~~KFdSGcGWPSF~~pi~~~~V~~ 110 (164)
T 3cxk_A 31 YPYPKDDAELRRRLTPMQYEVTQHAATEPPFTGEYTDTEDAGIYHCVVCGTALFESGAKYHSGCGWPSYFKPIDGEVIDE 110 (164)
T ss_dssp CCSCCCHHHHHHHSCHHHHHHHHHCCCCCTTCSTTTTCCCSEEEEETTTCCEEEEGGGBCCCCSSSCEESSCSSTTSEEE
T ss_pred cccCCCHHHHHhhCCHHHHHHHHhcCCCCCCcccccccCCCeEEEccCCCccccCCchhccCCCCCcccCcccCCCceEE
Confidence 457899999999999999999999999999999999999999999999999999999999999999999999976 8999
Q ss_pred ccCCC--cceeEEEecCCCCCcccccCCCCCC-CCCCceeeeccceeeeeeCCC
Q 032503 85 SPDPD--GRRTEITCAACGGHMGHVFKGEGFK-TPTDERHCVNSVSIKFIPGDA 135 (139)
Q Consensus 85 ~~D~s--m~RtEv~C~~Cg~HLGHVF~~DG~p-~ptg~RyCINs~sL~F~p~~~ 135 (139)
++|.+ |.||||+|++||+||||||+ || | +|||+|||||||||+|+|+++
T Consensus 111 ~~D~s~gm~RtEV~C~~Cg~HLGHVF~-DG-P~~ptg~RyCINS~sL~F~p~~~ 162 (164)
T 3cxk_A 111 KMDYTHGMTRVEVRCNQCGAHLGHVFE-DG-PRDKTGLRYCINSAALNFEAKPE 162 (164)
T ss_dssp EEECGGGCCEEEEEETTTCCEEEEEES-CS-CTTTTSCEEEECGGGEEEEECC-
T ss_pred eECCCCCcEEEEEEeCCCCCccCcccC-CC-CCCCCCCEEeeceeeEeeecccc
Confidence 99998 99999999999999999998 88 6 899999999999999999754
No 5
>3hcj_A MSRB, peptide methionine sulfoxide reductase; methionine sulfoxide reductase B, oxidized form, oxidoreductase; 1.66A {Xanthomonas campestris PV} PDB: 3hci_A*
Probab=100.00 E-value=2e-70 Score=423.82 Aligned_cols=124 Identities=43% Similarity=0.776 Sum_probs=118.4
Q ss_pred CHHHHHhcCCHHHHHHhhhCCCCCCCccCCCccccceEEEeccCCcccccCCccccCCCCCccCCcccC-CCeEEccCCC
Q 032503 11 TEEEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGLP-GAINRSPDPD 89 (139)
Q Consensus 11 ~~~ewr~~Ltp~qy~V~r~~gTE~pfsg~y~~~~~~G~Y~C~~Cg~pLF~S~~Kf~Sg~GWPSF~~~i~-~~v~~~~D~s 89 (139)
..+|||++|||+||+|||++|||+||||+||+++++|+|+|++||+|||+|++|||||||||||++||+ ++|+++.|.+
T Consensus 13 ~~~e~~~~Ltp~qy~V~r~~gTE~pftg~y~~~~~~G~Y~C~~Cg~pLF~S~~KFdSg~GWPSF~~pi~~~~v~~~~D~s 92 (154)
T 3hcj_A 13 QRDALIAGLSDEEQRVLLHHGTEAPFCGVFLDNKLDGVYTCRLCGLPLFRSNAKFDSGTGWPSFFAPYDPAHVREIRDTS 92 (154)
T ss_dssp HHHHHHHTSCHHHHHHHSCCSSSCCCCCCCCSSCSSEEEEETTTCCEEEEECTTCCCCTTSSTTEEESCGGGEEEECCTT
T ss_pred HHHHHHhhCCHHHHHHHHhcCCCCCCcCCCCCCCCCEEEEccCCCCccccCcccccCCCCCcccccccCccceEEeecCC
Confidence 356899999999999999999999999999999999999999999999999999999999999999996 5999999998
Q ss_pred --cceeEEEecCCCCCcccccCCCCCCCCCCceeeeccceeeeeeCCCC
Q 032503 90 --GRRTEITCAACGGHMGHVFKGEGFKTPTDERHCVNSVSIKFIPGDAP 136 (139)
Q Consensus 90 --m~RtEv~C~~Cg~HLGHVF~~DG~p~ptg~RyCINs~sL~F~p~~~~ 136 (139)
|.||||+|++||+||||||+ || |+|||+|||||||||+|+|+++.
T Consensus 93 ~gm~RtEV~C~~Cg~HLGHVF~-DG-P~ptg~RyCiNS~sL~F~p~~~~ 139 (154)
T 3hcj_A 93 YGMIRTEIVCARCDSHLGHVFP-DG-PPPTGERHCLNSVSLAFTEDGQP 139 (154)
T ss_dssp TTTSCEEEEETTTCCEEEEEES-CS-CTTTTCEEEECGGGEEEEETTSB
T ss_pred CCceEEEEEeCCCCCccCCccC-CC-CCCCCCEeeeceeeEEeeeCCCC
Confidence 99999999999999999998 88 78999999999999999998643
No 6
>2l1u_A MSRB2, methionine-R-sulfoxide reductase B2, mitochondria; methionine sulfoxide reductase, oxidoreductase; NMR {Mus musculus}
Probab=100.00 E-value=3.5e-71 Score=423.88 Aligned_cols=122 Identities=41% Similarity=0.835 Sum_probs=117.8
Q ss_pred HHHHhcCCHHHHHHhhhCCCCCCCccCCCccccceEEEeccCCcccccCCccccCCCCCccCCccc--------CCCeEE
Q 032503 13 EEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGL--------PGAINR 84 (139)
Q Consensus 13 ~ewr~~Ltp~qy~V~r~~gTE~pfsg~y~~~~~~G~Y~C~~Cg~pLF~S~~Kf~Sg~GWPSF~~~i--------~~~v~~ 84 (139)
+|||++|||+||+|||++|||+||||+||+++++|+|+|++||+|||+|++|||||||||||++|| +++|++
T Consensus 2 ~ewr~~Ltp~qy~V~r~~gTE~pftg~y~~~~~~G~Y~C~~Cg~pLF~S~~KFdSg~GWPSF~~pi~~~~~~~~~~~V~~ 81 (143)
T 2l1u_A 2 ADWQKKLTPEQFYVTREKGTEAPFSGMYLNNKETGMYHCVCCDSPLFSSEKKYCSGTGWPSFSEAYGSKGSDESHTGILR 81 (143)
T ss_dssp CCSHHHHSCSHHHHHHHTTCCCSCCGGGSSCCCCEEEEESSSSCEEEEGGGBCTTTTCCSBBSSCCSCCTTHHHHTCEEE
T ss_pred hHHHhhCCHHHHHHHHhcCCCCCCcCCCcCCcCCeEEEeCCCCCeeecCcccccCCCCChhhchhhccccccCCCCceEE
Confidence 689999999999999999999999999999999999999999999999999999999999999999 679999
Q ss_pred ccCCC--cceeEEEecCCCCCcccccCCCCCCCCCCceeeeccceeeeeeCCCC
Q 032503 85 SPDPD--GRRTEITCAACGGHMGHVFKGEGFKTPTDERHCVNSVSIKFIPGDAP 136 (139)
Q Consensus 85 ~~D~s--m~RtEv~C~~Cg~HLGHVF~~DG~p~ptg~RyCINs~sL~F~p~~~~ 136 (139)
+.|.| |.||||+|++||+||||||+ || |+|||+|||||||||+|+|+++-
T Consensus 82 ~~D~s~gm~RtEV~C~~Cg~HLGHVF~-DG-P~ptg~RyCINS~sL~F~p~~~~ 133 (143)
T 2l1u_A 82 RLDTSLGCPRMEVVCKQCEAHLGHVFP-DG-PKPTGQRFCINSVALKFKPSKPA 133 (143)
T ss_dssp EEECTTSSCEEEEEESSSCCCCEEEEC-CS-SCGGGCEEEECCTTEEEEESSBT
T ss_pred eecccCCceEEEEEECCCCCcCCcccC-CC-CCCCCCEEEeeeeEEeccchhhh
Confidence 99998 99999999999999999998 88 78999999999999999998653
No 7
>3e0m_A Peptide methionine sulfoxide reductase MSRA/MSRB 1; fusion, msrab, linker, hinge, cell membrane, membrane, multifunctional enzyme, oxidoreductase; 2.40A {Streptococcus pneumoniae}
Probab=100.00 E-value=3.1e-65 Score=430.58 Aligned_cols=126 Identities=33% Similarity=0.602 Sum_probs=120.5
Q ss_pred CCCCHHHHHhcCCHHHHHHhhhCCCCCCCccCCCccccceEEEeccCCcccccCCccccCCCCCccCCcccC-CCeEEcc
Q 032503 8 VQKTEEEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGLP-GAINRSP 86 (139)
Q Consensus 8 ~~~~~~ewr~~Ltp~qy~V~r~~gTE~pfsg~y~~~~~~G~Y~C~~Cg~pLF~S~~Kf~Sg~GWPSF~~~i~-~~v~~~~ 86 (139)
..++++|||++|||+||+|||++||||||||+||+++++|+|+|++||+|||+|++|||||||||||++||+ ++|++++
T Consensus 169 ~~~~~~ew~~~Lt~~qy~V~r~~gTE~pftg~y~~~~~~G~Y~c~~cg~pLF~S~~KfdSg~GWPSF~~~i~~~~v~~~~ 248 (313)
T 3e0m_A 169 EKPSQEVLKASLSEESYRVTQEAATEAPFTNAYDQTFEEGIYVDITTGEPLFFAKDKFASGCGWPSFSRPLSKELIHYYK 248 (313)
T ss_dssp CCCCHHHHHHHSCHHHHHHHHHCCCCCSSSSTTTTCCCSEEEEETTTCCEEEEGGGBCCCCSSSCEESSCSSGGGEEEEE
T ss_pred ccCCHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCCCCCeEEEecCCCccccCCCccccCCCCCcccCcccCCCceEEee
Confidence 457999999999999999999999999999999999999999999999999999999999999999999995 6999999
Q ss_pred CCC--cceeEEEecCCCCCcccccCCCCCCCCCCceeeeccceeeeeeCC
Q 032503 87 DPD--GRRTEITCAACGGHMGHVFKGEGFKTPTDERHCVNSVSIKFIPGD 134 (139)
Q Consensus 87 D~s--m~RtEv~C~~Cg~HLGHVF~~DG~p~ptg~RyCINs~sL~F~p~~ 134 (139)
|.| |.||||+|++||+||||||+ |||.+|||+|||||||||+|+|++
T Consensus 249 D~s~gm~RtEv~c~~c~~HLGHVF~-DGp~~ptg~RyCiNs~sL~F~p~~ 297 (313)
T 3e0m_A 249 DLSHGMERIEVRSRSGSAHLGHVFT-DGPRELGGLRYCINSASLRFVAKD 297 (313)
T ss_dssp ECCTTCCEEEEEESSSCCEEEEEES-CSCTTTTSCEEEECGGGEEEEEHH
T ss_pred cCCCCcEEEEEECCCCCCccCcccC-CCCCCCCCCEEeeceeeEeeeccc
Confidence 998 99999999999999999998 884379999999999999999974
No 8
>2kv1_A Methionine-R-sulfoxide reductase B1; MSRB1, SELR, metal-binding, nucleus, oxidoreductase, seleniu; NMR {Mus musculus}
Probab=100.00 E-value=4.7e-57 Score=338.78 Aligned_cols=103 Identities=30% Similarity=0.705 Sum_probs=95.2
Q ss_pred CCCccC-CCccccceEEEeccCCcccccCCccccCCCCCccCCcccC-CCeEEccCCC-cceeEEEecCCCCCcccccCC
Q 032503 34 PRGTGE-YNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGLP-GAINRSPDPD-GRRTEITCAACGGHMGHVFKG 110 (139)
Q Consensus 34 ~pfsg~-y~~~~~~G~Y~C~~Cg~pLF~S~~Kf~Sg~GWPSF~~~i~-~~v~~~~D~s-m~RtEv~C~~Cg~HLGHVF~~ 110 (139)
.+|+|+ |||++++|+|+|++||+|||+|++|||||||||||++||+ ++|+++.|.+ |.||||+|++||+||||||.+
T Consensus 5 ~~F~ge~y~~~~e~G~Y~C~~Cg~pLF~S~~KfdSg~GWPSF~~~i~~~~v~~~~d~~~~~r~Ev~C~~Cg~HLGHVF~~ 84 (124)
T 2kv1_A 5 SFFGGEVFQNHFEPGVYVCAKCSYELFSSHSKYAHSSPWPAFTETIHPDSVTKCPEKNRPEALKVSCGKCGNGLGHEFLN 84 (124)
T ss_dssp CCCCSCSGGGTTCCEEEEETTTCCBCCCTTSCCCCCSSSCCBSCCCCCSSCEEEECSSSTTCEEEECTTTTCCCEEECTT
T ss_pred cCccCccccCCCCCEEEEecCCCCcccccCCcccCCCCCceeecccccceEEEEeccCCceEEEEEEecCCCccCCccCC
Confidence 379999 6788899999999999999999999999999999999995 5888888988 999999999999999999944
Q ss_pred CCCCCCCCceeeeccceeeeeeCCCCC
Q 032503 111 EGFKTPTDERHCVNSVSIKFIPGDAPA 137 (139)
Q Consensus 111 DG~p~ptg~RyCINs~sL~F~p~~~~~ 137 (139)
|| |+|||+|||||||||+|+|+++.+
T Consensus 85 DG-P~ptg~RyCINS~sL~F~p~~~~~ 110 (124)
T 2kv1_A 85 DG-PKRGQSRFCIFSSSLKFVPKGKEA 110 (124)
T ss_dssp SC-TTTTCSCEECCTTTEEEEECSSSC
T ss_pred CC-CCCCCCEEeecceeeEeEECcccc
Confidence 88 789999999999999999987554
No 9
>3mao_A Methionine-R-sulfoxide reductase B1; oxidoreductase, structural genomics consortium, SGC, cytoplasm, metal-binding, nucleus, selenocysteine, zinc; HET: MLI; 1.42A {Homo sapiens}
Probab=100.00 E-value=4.9e-57 Score=330.58 Aligned_cols=99 Identities=30% Similarity=0.737 Sum_probs=92.5
Q ss_pred CCCccccceEEEeccCCcccccCCccccCCCCCccCCcccC-CCeEEccCCC-cceeEEEecCCCCCcccccCCCCCCCC
Q 032503 39 EYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGLP-GAINRSPDPD-GRRTEITCAACGGHMGHVFKGEGFKTP 116 (139)
Q Consensus 39 ~y~~~~~~G~Y~C~~Cg~pLF~S~~Kf~Sg~GWPSF~~~i~-~~v~~~~D~s-m~RtEv~C~~Cg~HLGHVF~~DG~p~p 116 (139)
+||+++++|+|+|++||+|||+|++|||||||||||++||+ ++|+++.|.+ |.||||+|++||+||||||.+|| |+|
T Consensus 4 ~y~~~~~~G~Y~C~~Cg~pLF~S~~KFdSg~GWPSF~~pi~~~~v~~~~D~~~~~RtEV~C~~C~~HLGHVF~~DG-P~p 82 (105)
T 3mao_A 4 VFQNHFEPGVYVCAKCGYELFSSRSKYAHSSPWPAFTETIHADSVAKRPEHNRSEALKVSCGKCGNGLGHEFLNDG-PKP 82 (105)
T ss_dssp CCTTCCCSEEEEETTTCCEEEEGGGEECCSSSSCEESCCSSTTSEEEEECTTSTTEEEEEETTTCCEEEEEETTCS-SST
T ss_pred cccCCCCCEEEEcCCCCCccccCCcccCCCCCChhhccccCCCceEEEecCCCCCEEEEEeCCCCCccCcccCCCC-cCC
Confidence 69999999999999999999999999999999999999996 5899999975 99999999999999999995488 789
Q ss_pred CCceeeeccceeeeeeCCCCCC
Q 032503 117 TDERHCVNSVSIKFIPGDAPAS 138 (139)
Q Consensus 117 tg~RyCINs~sL~F~p~~~~~~ 138 (139)
||+|||||||||+|+|+++.++
T Consensus 83 tg~RyCiNS~sL~F~p~~~~~~ 104 (105)
T 3mao_A 83 GQSRFSIFSSSLKFVPKGKETS 104 (105)
T ss_dssp TCCEEEECGGGEEEEETTCCCC
T ss_pred CCCEEeeCeeeEEeeecccccc
Confidence 9999999999999999987654
No 10
>2kao_A Methionine-R-sulfoxide reductase B1; mouse reduced methionine sulfoxide reductase B1 (MSRB1) (SEC95Cys mutant, selenocysteine; NMR {Mus musculus} PDB: 2kv1_A
Probab=100.00 E-value=2.7e-56 Score=334.64 Aligned_cols=100 Identities=30% Similarity=0.727 Sum_probs=92.6
Q ss_pred CccC-CCccccceEEEeccCCcccccCCccccCCCCCccCCcccC-CCeEEccCCC-cceeEEEecCCCCCcccccCCCC
Q 032503 36 GTGE-YNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGLP-GAINRSPDPD-GRRTEITCAACGGHMGHVFKGEG 112 (139)
Q Consensus 36 fsg~-y~~~~~~G~Y~C~~Cg~pLF~S~~Kf~Sg~GWPSF~~~i~-~~v~~~~D~s-m~RtEv~C~~Cg~HLGHVF~~DG 112 (139)
|+|+ ||+++++|+|+|++||+|||+|++|||||||||||++||+ ++|++++|.+ |.||||+|++||+||||||.+||
T Consensus 7 ~~ge~y~~~~~~GiY~C~~Cg~pLF~S~~KFdSG~GWPSF~~pi~~~~v~~~~D~~~~~RtEV~C~~Cg~HLGHVF~~DG 86 (124)
T 2kao_A 7 FGGEVFQNHFEPGVYVCAKCSYELFSSHSKYAHSSPWPAFTETIHPDSVTKCPEKNRPEALKVSCGKCGNGLGHEFLNDG 86 (124)
T ss_dssp CCSCTTTTCCCCCEEEESSSCCCCCCTTTSCCCCCSSCCBSCCCCCSSCEEEECSSCTTCEEEECTTTTCCCEEECCSSC
T ss_pred cccccccCCCCCEEEEeCCCCCccccCcccccCCCCChhhCccCCccceEEEecCCCCCEEEEEeCCCCCcCCccCCCCC
Confidence 5777 7899999999999999999999999999999999999996 5999999975 99999999999999999995488
Q ss_pred CCCCCCceeeeccceeeeeeCCCC
Q 032503 113 FKTPTDERHCVNSVSIKFIPGDAP 136 (139)
Q Consensus 113 ~p~ptg~RyCINs~sL~F~p~~~~ 136 (139)
|+|||+|||||||||+|+|+++-
T Consensus 87 -P~ptg~RyCINS~sL~F~p~~~~ 109 (124)
T 2kao_A 87 -PKRGQSRFCIFSSSLKFVPKGKE 109 (124)
T ss_dssp -SSSSCCCEECCSSSEEEECCSSS
T ss_pred -cCCCCCEeeeCeEEEEeeccccc
Confidence 78999999999999999998643
No 11
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=84.08 E-value=1 Score=27.20 Aligned_cols=32 Identities=31% Similarity=0.500 Sum_probs=25.4
Q ss_pred cccceEEEeccCCcccccCCccccCCCCCccCCc
Q 032503 43 LYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYE 76 (139)
Q Consensus 43 ~~~~G~Y~C~~Cg~pLF~S~~Kf~Sg~GWPSF~~ 76 (139)
..+.|.++|..||..+ .+.-.+.|.-|.+|..
T Consensus 19 d~~~gelvC~~CG~v~--~e~~id~~~ewr~f~~ 50 (50)
T 1pft_A 19 DPERGEIVCAKCGYVI--EENIIDMGPEWRAFDA 50 (50)
T ss_dssp ETTTTEEEESSSCCBC--CCCCCCCCSSSSCCCC
T ss_pred cCCCCeEECcccCCcc--cccccccCCcccccCC
Confidence 3467899999999887 3455788889999963
No 12
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=82.21 E-value=0.97 Score=28.73 Aligned_cols=32 Identities=28% Similarity=0.603 Sum_probs=26.9
Q ss_pred cccceEEEeccCCcccccCCccccCCCCCccCCc
Q 032503 43 LYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYE 76 (139)
Q Consensus 43 ~~~~G~Y~C~~Cg~pLF~S~~Kf~Sg~GWPSF~~ 76 (139)
..+.|.++|..||.-| .+.-.|.|.-|.+|..
T Consensus 25 D~~~ge~vC~~CGlVl--~e~~iD~gpEWR~F~~ 56 (58)
T 1dl6_A 25 DYRAGDMICPECGLVV--GDRVIDVGSEWRTFSN 56 (58)
T ss_dssp CSSSCCEECTTTCCEE--CCSCCCCCCSCCCSCC
T ss_pred eCCCCeEEeCCCCCEE--eccccccCCcccccCC
Confidence 3578999999999887 5567889999999975
No 13
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=62.68 E-value=6.5 Score=28.83 Aligned_cols=20 Identities=20% Similarity=0.478 Sum_probs=0.0
Q ss_pred cceeEEEecCCCCCcccccC
Q 032503 90 GRRTEITCAACGGHMGHVFK 109 (139)
Q Consensus 90 m~RtEv~C~~Cg~HLGHVF~ 109 (139)
..|+.+.|.+||..--..|.
T Consensus 88 lp~t~~~CpkCg~~~a~f~q 107 (133)
T 3qt1_I 88 LPRSDRECPKCHSRENVFFQ 107 (133)
T ss_dssp --------------------
T ss_pred CCcccCCCCCCCCceEEEEE
Confidence 78999999999976554443
No 14
>3gox_A Restriction endonuclease HPY99I; endonuclease-DNA complex, restriction enzyme, HPY99I, pseudopalindrome; HET: 1PE; 1.50A {Helicobacter pylori} PDB: 3fc3_A*
Probab=51.81 E-value=14 Score=29.23 Aligned_cols=66 Identities=18% Similarity=0.357 Sum_probs=43.5
Q ss_pred hcCCHHHHHHhhhCCCCCCCccCCCccccceEEEeccCCcccccCCccccCCCCCccCCcccCCCeEEccCCC-cceeEE
Q 032503 17 AILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPGAINRSPDPD-GRRTEI 95 (139)
Q Consensus 17 ~~Ltp~qy~V~r~~gTE~pfsg~y~~~~~~G~Y~C~~Cg~pLF~S~~Kf~Sg~GWPSF~~~i~~~v~~~~D~s-m~RtEv 95 (139)
=.||++||+-+.+...+ .--++.|+.|+.++.....| .+....|.. ..--.+
T Consensus 117 YGIT~eey~~L~e~Qg~-----------~~~~G~C~ICg~~~~~~~~k----------------~lvVDHDH~TG~VRGl 169 (200)
T 3gox_A 117 VKLSSTEKKKMDEIAPP-----------KGSVFTCPICEKRSIVGVTA----------------NLVHDHNHDTGWGREW 169 (200)
T ss_dssp SCCCHHHHHHHHTTCCC-----------TTCEEECTTTCCEEEBTTTB----------------CEEEEECTTTCCEEEE
T ss_pred cCCCHHHHHHHHHHccc-----------CCCCCcCcCCCCCCCcCccc----------------ceeeecccCCCcEecc
Confidence 36899999888775432 22378999999998743221 122222333 233468
Q ss_pred EecCCCCCcccccC
Q 032503 96 TCAACGGHMGHVFK 109 (139)
Q Consensus 96 ~C~~Cg~HLGHVF~ 109 (139)
+|..|..=||++=+
T Consensus 170 LC~~CN~~LG~~~D 183 (200)
T 3gox_A 170 ICDSCNTGLGRFKD 183 (200)
T ss_dssp EEHHHHHHHHHTTT
T ss_pred cchhhcchhccccC
Confidence 99999999999854
No 15
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=49.57 E-value=8.2 Score=27.17 Aligned_cols=20 Identities=20% Similarity=0.516 Sum_probs=15.5
Q ss_pred cceeEEEecCCCCCcccccC
Q 032503 90 GRRTEITCAACGGHMGHVFK 109 (139)
Q Consensus 90 m~RtEv~C~~Cg~HLGHVF~ 109 (139)
..|+++.|.+||..--..|.
T Consensus 68 lp~~~~~Cp~C~~~~a~~~q 87 (113)
T 3h0g_I 68 LPRSDKECPRCHQHEAVFYQ 87 (113)
T ss_dssp SCBCCSCCSSSCCSCEEEEC
T ss_pred CCCcccCCCCCCCceEEEEE
Confidence 78999999999976544443
No 16
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=49.22 E-value=13 Score=23.41 Aligned_cols=41 Identities=37% Similarity=0.737 Sum_probs=24.3
Q ss_pred EEEeccCCcccccCCccccCCCCCccCCccc-CC-CeEEccCCCcceeEEEecCCCCC
Q 032503 48 FYNCAGCGTALYKSVTKFDSGCGWPAFYEGL-PG-AINRSPDPDGRRTEITCAACGGH 103 (139)
Q Consensus 48 ~Y~C~~Cg~pLF~S~~Kf~Sg~GWPSF~~~i-~~-~v~~~~D~sm~RtEv~C~~Cg~H 103 (139)
.|.|..||. -||+--|+|.- .| ++ ....++|.. +|..||+-
T Consensus 3 ~y~C~vCGy-------vYd~~~Gdp~~--gi~pGt~fe~lP~dw------~CP~Cg~~ 45 (54)
T 4rxn_A 3 KYTCTVCGY-------IYDPEDGDPDD--GVNPGTDFKDIPDDW------VCPLCGVG 45 (54)
T ss_dssp CEEETTTCC-------EECTTTCBGGG--TBCTTCCGGGSCTTC------BCTTTCCB
T ss_pred ceECCCCCe-------EECCCcCCccc--CcCCCCChhHCCCCC------cCcCCCCc
Confidence 599999993 46666676642 23 22 444444443 57777763
No 17
>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}
Probab=49.19 E-value=6.5 Score=29.02 Aligned_cols=23 Identities=22% Similarity=0.391 Sum_probs=17.9
Q ss_pred cccceEEEecc---CCcccccCCccc
Q 032503 43 LYADGFYNCAG---CGTALYKSVTKF 65 (139)
Q Consensus 43 ~~~~G~Y~C~~---Cg~pLF~S~~Kf 65 (139)
..+.|+|.|++ +|..+|...+|.
T Consensus 219 ~~DsG~Y~C~a~n~~g~~~fG~gt~l 244 (256)
T 3tf7_C 219 PSQTSLYFCASSDAPGQLYFGEGSKL 244 (256)
T ss_dssp GGGCEEEEEEEEEETTEEEECCCEEE
T ss_pred HHHCEEEEEEecCCCCccEECCCeEE
Confidence 45889999987 678888776664
No 18
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=48.88 E-value=4.9 Score=28.71 Aligned_cols=59 Identities=15% Similarity=0.417 Sum_probs=31.5
Q ss_pred ceEEEeccCCcccccCCc-cccCCCCCccCCcccC---CCeEE-ccCCCcceeEEEecCCCCCcccccC
Q 032503 46 DGFYNCAGCGTALYKSVT-KFDSGCGWPAFYEGLP---GAINR-SPDPDGRRTEITCAACGGHMGHVFK 109 (139)
Q Consensus 46 ~G~Y~C~~Cg~pLF~S~~-Kf~Sg~GWPSF~~~i~---~~v~~-~~D~sm~RtEv~C~~Cg~HLGHVF~ 109 (139)
.++|.|..||..--.... .|..- +...+. +.+.. ..|....||++.|.+||.+--..|.
T Consensus 24 ~~~~~C~~C~y~~~~~~~~v~~~~-----~~~~~~e~~~v~~~~~~~~t~p~t~~~Cp~C~~~~a~~~q 87 (122)
T 1twf_I 24 RLLFECRTCSYVEEAGSPLVYRHE-----LITNIGETAGVVQDIGSDPTLPRSDRECPKCHSRENVFFQ 87 (122)
T ss_dssp EEEEECSSSSCEEECSCSEEEEEE-----SSCCTTSSTTCCTTGGGCTTSCCCCCCCTTTCCCCEEEEE
T ss_pred CCEEECCcCCCeeecCccEEEEEe-----ecccccccccccccccccccccccCCCCCCCCCCEEEEEE
Confidence 578999999975432211 11110 111221 11111 2233478899999999976555453
No 19
>3fac_A Putative uncharacterized protein; complete proteome, structural genomics, PSI-2, protein structure initiative; 2.50A {Rhodobacter sphaeroides 2}
Probab=47.15 E-value=21 Score=24.54 Aligned_cols=32 Identities=22% Similarity=0.305 Sum_probs=22.7
Q ss_pred eeEEEecCCCCCcccccCCCCCCCCCCceeeeccceee
Q 032503 92 RTEITCAACGGHMGHVFKGEGFKTPTDERHCVNSVSIK 129 (139)
Q Consensus 92 RtEv~C~~Cg~HLGHVF~~DG~p~ptg~RyCINs~sL~ 129 (139)
..-..|+.||++|-+... ++ | ..+=||..+|+
T Consensus 65 ~~r~FC~~CGs~l~~~~~-~~-~----~~~~V~~g~ld 96 (118)
T 3fac_A 65 AKHWFCRTCGIYTHHQRR-SN-P----EEYGVNVAILE 96 (118)
T ss_dssp SEEEEETTTCCEEEEECS-SC-T----TEEEEEGGGBT
T ss_pred EeeEECCCCCccccCccC-CC-C----CEEEEEecccC
Confidence 345789999999977654 32 2 35668888875
No 20
>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*
Probab=46.13 E-value=8.5 Score=28.10 Aligned_cols=22 Identities=18% Similarity=0.146 Sum_probs=16.3
Q ss_pred cccceEEEeccCCcccccCCcc
Q 032503 43 LYADGFYNCAGCGTALYKSVTK 64 (139)
Q Consensus 43 ~~~~G~Y~C~~Cg~pLF~S~~K 64 (139)
..+.|+|.|.+.+..+|...++
T Consensus 209 ~~D~G~Y~C~a~~~~~fG~gt~ 230 (242)
T 2znx_A 209 TEDTATYYCANXDGDYXGQGTL 230 (242)
T ss_dssp GGGCEEEEEEETTSSCBCCCEE
T ss_pred cCcCEEEEEeccCCcccCCCeE
Confidence 3588999999987656665554
No 21
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=46.02 E-value=16 Score=22.65 Aligned_cols=19 Identities=32% Similarity=0.599 Sum_probs=13.7
Q ss_pred EEEeccCCcccccCCccccCCCCCcc
Q 032503 48 FYNCAGCGTALYKSVTKFDSGCGWPA 73 (139)
Q Consensus 48 ~Y~C~~Cg~pLF~S~~Kf~Sg~GWPS 73 (139)
.|.|..||. -||.-.|+|-
T Consensus 2 ~~~C~~CGy-------vYd~~~Gdp~ 20 (52)
T 1yk4_A 2 KLSCKICGY-------IYDEDEGDPD 20 (52)
T ss_dssp EEEESSSSC-------EEETTTCBGG
T ss_pred cEEeCCCCe-------EECCCcCCcc
Confidence 699999993 3666666663
No 22
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=45.87 E-value=16 Score=22.91 Aligned_cols=19 Identities=32% Similarity=0.809 Sum_probs=13.9
Q ss_pred EEEeccCCcccccCCccccCCCCCcc
Q 032503 48 FYNCAGCGTALYKSVTKFDSGCGWPA 73 (139)
Q Consensus 48 ~Y~C~~Cg~pLF~S~~Kf~Sg~GWPS 73 (139)
.|.|..||. -||.--|+|-
T Consensus 3 ~y~C~~CGy-------vYd~~~Gdp~ 21 (55)
T 2v3b_B 3 KWQCVVCGF-------IYDEALGLPE 21 (55)
T ss_dssp EEEETTTCC-------EEETTTCBTT
T ss_pred cEEeCCCCe-------EECCCcCCcc
Confidence 699999994 3566667663
No 23
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=44.29 E-value=21 Score=22.09 Aligned_cols=18 Identities=39% Similarity=0.920 Sum_probs=13.2
Q ss_pred EEEeccCCcccccCCccccCCCCCc
Q 032503 48 FYNCAGCGTALYKSVTKFDSGCGWP 72 (139)
Q Consensus 48 ~Y~C~~Cg~pLF~S~~Kf~Sg~GWP 72 (139)
.|.|..||. -||+--|+|
T Consensus 3 ~y~C~~CGy-------vYd~~~Gdp 20 (52)
T 1e8j_A 3 IYVCTVCGY-------EYDPAKGDP 20 (52)
T ss_dssp CEECSSSCC-------CCCTTTCCT
T ss_pred cEEeCCCCe-------EEcCCcCCc
Confidence 599999993 366666666
No 24
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=44.06 E-value=11 Score=30.94 Aligned_cols=32 Identities=31% Similarity=0.601 Sum_probs=25.6
Q ss_pred cccceEEEeccCCcccccCCccccCCCCCccCCc
Q 032503 43 LYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYE 76 (139)
Q Consensus 43 ~~~~G~Y~C~~Cg~pLF~S~~Kf~Sg~GWPSF~~ 76 (139)
....|.++|..||.-| .+.-.|.|.-|-+|..
T Consensus 37 D~~~G~~vC~~CG~Vl--~e~~id~~~EwR~F~~ 68 (345)
T 3k7a_M 37 RFSEGDVVCALCGLVL--SDKLVDTRSEWRTFSN 68 (345)
T ss_dssp CSSSCSCCCSSSCCCC--CCCCCCTTCCCCCC--
T ss_pred ECCCCCEecCCCCeEc--ccccccCCcccccccc
Confidence 3578999999999988 5567888899999974
No 25
>1v65_A Riken cDNA 2610044O15; transcriptional repressor, heterochromatin, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.212.1.1
Probab=43.75 E-value=32 Score=19.48 Aligned_cols=27 Identities=33% Similarity=0.491 Sum_probs=19.7
Q ss_pred CCCCCCCCCCHHHHHhcCCHHHHHHhhh
Q 032503 2 TAAADSVQKTEEEWRAILSPEQFRILRQ 29 (139)
Q Consensus 2 ~~~~~~~~~~~~ewr~~Ltp~qy~V~r~ 29 (139)
++.+-.+.++.++|. .|.+.|..+.+.
T Consensus 9 ~f~dva~~fs~eew~-~l~~~qk~ly~~ 35 (64)
T 1v65_A 9 TYDDVHMNFTEEEWD-LLDSSQKRLYEE 35 (64)
T ss_dssp CCCCCTTCCCHHHHH-TSCHHHHHHHHH
T ss_pred ccceeEEecCHHHHh-CCCHHHhhheee
Confidence 455566788999998 688888755444
No 26
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=42.66 E-value=31 Score=23.46 Aligned_cols=21 Identities=33% Similarity=1.069 Sum_probs=14.9
Q ss_pred cceEEEeccCCcccccCCccccCCCCCc
Q 032503 45 ADGFYNCAGCGTALYKSVTKFDSGCGWP 72 (139)
Q Consensus 45 ~~G~Y~C~~Cg~pLF~S~~Kf~Sg~GWP 72 (139)
+.-.|.|.+||. -||.-.|+|
T Consensus 24 em~~y~C~vCGy-------vYD~~~Gdp 44 (81)
T 2kn9_A 24 DYKLFRCIQCGF-------EYDEALGWP 44 (81)
T ss_dssp CCCEEEETTTCC-------EEETTTCBT
T ss_pred CcceEEeCCCCE-------EEcCCcCCc
Confidence 345899999994 356556665
No 27
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=39.54 E-value=20 Score=24.71 Aligned_cols=42 Identities=36% Similarity=0.714 Sum_probs=24.1
Q ss_pred ceEEEeccCCcccccCCccccCCCCCccCCccc-CC-CeEEccCCCcceeEEEecCCCC
Q 032503 46 DGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGL-PG-AINRSPDPDGRRTEITCAACGG 102 (139)
Q Consensus 46 ~G~Y~C~~Cg~pLF~S~~Kf~Sg~GWPSF~~~i-~~-~v~~~~D~sm~RtEv~C~~Cg~ 102 (139)
...|.|..||. -||.--|+|- ..| ++ ....++|.. +|..||+
T Consensus 33 m~~y~C~vCGy-------vYD~~~Gdp~--~gI~pGT~fedlPddW------~CPvCga 76 (87)
T 1s24_A 33 YLKWICITCGH-------IYDEALGDEA--EGFTPGTRFEDIPDDW------CCPDCGA 76 (87)
T ss_dssp CCEEEETTTTE-------EEETTSCCTT--TTCCSCCCGGGCCTTC------CCSSSCC
T ss_pred CceEECCCCCe-------EecCCcCCcc--cCcCCCCChhHCCCCC------CCCCCCC
Confidence 45899999994 3566666663 223 22 333333332 5777775
No 28
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=37.91 E-value=26 Score=22.95 Aligned_cols=42 Identities=31% Similarity=0.682 Sum_probs=24.9
Q ss_pred eEEEeccCCcccccCCccccCCCCCccCCccc-CC-CeEEccCCCcceeEEEecCCCCC
Q 032503 47 GFYNCAGCGTALYKSVTKFDSGCGWPAFYEGL-PG-AINRSPDPDGRRTEITCAACGGH 103 (139)
Q Consensus 47 G~Y~C~~Cg~pLF~S~~Kf~Sg~GWPSF~~~i-~~-~v~~~~D~sm~RtEv~C~~Cg~H 103 (139)
..|.|..||. -||.-.|+|- ..| ++ ....++|.. +|..|++=
T Consensus 6 ~~y~C~vCGy-------iYd~~~Gdp~--~gi~pGT~f~~lPddw------~CP~Cga~ 49 (70)
T 1dx8_A 6 GKYECEACGY-------IYEPEKGDKF--AGIPPGTPFVDLSDSF------MCPACRSP 49 (70)
T ss_dssp SCEEETTTCC-------EECTTTCCTT--TTCCSSCCGGGSCTTC------BCTTTCCB
T ss_pred ceEEeCCCCE-------EEcCCCCCcc--cCcCCCCchhhCCCCC------cCCCCCCC
Confidence 3699999993 4666667763 333 22 333344332 67888763
No 29
>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A
Probab=34.94 E-value=16 Score=26.57 Aligned_cols=22 Identities=18% Similarity=0.030 Sum_probs=14.8
Q ss_pred cccceEEEecc--CCcccccCCcc
Q 032503 43 LYADGFYNCAG--CGTALYKSVTK 64 (139)
Q Consensus 43 ~~~~G~Y~C~~--Cg~pLF~S~~K 64 (139)
..+.|+|.|++ ++..+|...++
T Consensus 216 ~~DsG~Y~C~~~n~~~~~fg~gt~ 239 (253)
T 3uzq_A 216 ADDVATYFCQRSNEVPWTFGGGTK 239 (253)
T ss_dssp GGGCEEEEEEECSSSSCCBCCCEE
T ss_pred HHHCEEEEEEEccCCCcEECCCEE
Confidence 45889999987 44445555444
No 30
>2jso_A Polymyxin resistance protein PMRD; antibiotic resistance, transcription, signaling Pro; NMR {Escherichia coli}
Probab=34.87 E-value=13 Score=25.86 Aligned_cols=23 Identities=17% Similarity=0.283 Sum_probs=14.1
Q ss_pred cccCCCCCCCCCCceeeecccee
Q 032503 106 HVFKGEGFKTPTDERHCVNSVSI 128 (139)
Q Consensus 106 HVF~~DG~p~ptg~RyCINs~sL 128 (139)
++|.||=--+-..-|||||--..
T Consensus 39 ~~k~gDlLsPL~dA~YciNrn~~ 61 (88)
T 2jso_A 39 AVKVGDLLSPLQNALYCINREKL 61 (88)
T ss_dssp CCCTTCEECBSSSSEEEEBTEEE
T ss_pred ccccccccccchhhhhhhcCCCC
Confidence 45665532223678999996543
No 31
>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}
Probab=34.70 E-value=14 Score=27.01 Aligned_cols=22 Identities=23% Similarity=0.323 Sum_probs=14.4
Q ss_pred cccceEEEecc------CCcccccCCcc
Q 032503 43 LYADGFYNCAG------CGTALYKSVTK 64 (139)
Q Consensus 43 ~~~~G~Y~C~~------Cg~pLF~S~~K 64 (139)
..+.|+|.|++ |+.-+|...+|
T Consensus 218 ~~DsG~Y~C~~~~~~~~~~~~~fg~GT~ 245 (259)
T 3omz_A 218 LEDSAKYFCALGESLTRADKLIFGKGTR 245 (259)
T ss_dssp GGGCSEEEEEEESCSSTTCCCEECCCEE
T ss_pred hhHCEEEEEEEeCccCCCCceEECCCCE
Confidence 35889999987 44445544444
No 32
>2atp_B T-cell surface glycoprotein CD8 beta chain; CD8AB, CD8AA, MHC, immune system; HET: NAG; 2.40A {Mus musculus} SCOP: b.1.1.1 PDB: 3b9k_B*
Probab=33.82 E-value=17 Score=23.63 Aligned_cols=12 Identities=33% Similarity=0.551 Sum_probs=9.6
Q ss_pred cccceEEEeccC
Q 032503 43 LYADGFYNCAGC 54 (139)
Q Consensus 43 ~~~~G~Y~C~~C 54 (139)
..+.|+|.|+.-
T Consensus 88 ~~DsG~Y~C~~~ 99 (115)
T 2atp_B 88 PEDSDFYFCATV 99 (115)
T ss_dssp GGGCEEEEEEEE
T ss_pred HHHCEEEEEeEc
Confidence 358899999874
No 33
>1tvd_A T cell receptor, ES204 V delta; immunoreceptor, TCR, delta chain, variable domain; 1.90A {Homo sapiens} SCOP: b.1.1.1
Probab=32.78 E-value=18 Score=23.51 Aligned_cols=11 Identities=27% Similarity=0.317 Sum_probs=9.1
Q ss_pred ccceEEEeccC
Q 032503 44 YADGFYNCAGC 54 (139)
Q Consensus 44 ~~~G~Y~C~~C 54 (139)
.+.|+|.|+.-
T Consensus 86 ~DsG~Y~C~~~ 96 (116)
T 1tvd_A 86 EDSATYYCAFT 96 (116)
T ss_dssp GGCEEEEEEEE
T ss_pred HHCEEEEEEEe
Confidence 58899999873
No 34
>2k3r_A Ribonuclease P protein component 4; PFU RPP21, RNAse P, hydrolase, tRNA processing; NMR {Pyrococcus furiosus} PDB: 2ki7_B
Probab=31.43 E-value=40 Score=24.06 Aligned_cols=38 Identities=18% Similarity=0.428 Sum_probs=23.7
Q ss_pred EeccCCcccccCCccccCCCCCccCCcccCCCeEEccCCCcceeEEEecCCCCCc
Q 032503 50 NCAGCGTALYKSVTKFDSGCGWPAFYEGLPGAINRSPDPDGRRTEITCAACGGHM 104 (139)
Q Consensus 50 ~C~~Cg~pLF~S~~Kf~Sg~GWPSF~~~i~~~v~~~~D~sm~RtEv~C~~Cg~HL 104 (139)
.|..|+.+|-...+- .|. +...+...+.+.|..||..-
T Consensus 62 ~Ck~C~s~LIPG~t~----------------~vr-i~~~~k~~vv~tCl~Cg~~k 99 (123)
T 2k3r_A 62 YCKKCHAFLVPGINA----------------RVR-LRQKRMPHIVVKCLECGHIM 99 (123)
T ss_dssp BCTTTCCBCCBTTTE----------------EEE-EECSSSCEEEEEETTTTEEE
T ss_pred hccCCCCEeECCCce----------------EEE-EecCCccEEEEECCCCCCEE
Confidence 899999988532111 122 22223457889999998553
No 35
>1x0t_A Ribonuclease P protein component 4; pyrococcus horikoshii OT3, hydrolase; 1.60A {Pyrococcus horikoshii} PDB: 2zae_B
Probab=30.93 E-value=41 Score=23.85 Aligned_cols=39 Identities=28% Similarity=0.435 Sum_probs=23.6
Q ss_pred EeccCCcccccCCccccCCCCCccCCcccCCCeEEccCCCcceeEEEecCCCCCcc
Q 032503 50 NCAGCGTALYKSVTKFDSGCGWPAFYEGLPGAINRSPDPDGRRTEITCAACGGHMG 105 (139)
Q Consensus 50 ~C~~Cg~pLF~S~~Kf~Sg~GWPSF~~~i~~~v~~~~D~sm~RtEv~C~~Cg~HLG 105 (139)
.|..|+.+|-...+- .|. +...+...+-+.|..||..-=
T Consensus 67 ~Ck~C~s~LiPG~t~----------------~vr-i~~~~~~~vv~tCl~Cg~~kR 105 (120)
T 1x0t_A 67 YCKRCHTFLIPGVNA----------------RVR-LRTKRMPHVVITCLECGYIMR 105 (120)
T ss_dssp BCTTTCCBCCBTTTE----------------EEE-EECSSSCEEEEEETTTCCEEE
T ss_pred hccCCCCEeECCCce----------------EEE-EecCCccEEEEECCCCCCEEE
Confidence 899999988532211 121 222223478899999986543
No 36
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=30.92 E-value=18 Score=23.42 Aligned_cols=12 Identities=25% Similarity=0.625 Sum_probs=8.6
Q ss_pred eccCCcccccCC
Q 032503 51 CAGCGTALYKSV 62 (139)
Q Consensus 51 C~~Cg~pLF~S~ 62 (139)
|..||.++.++-
T Consensus 21 CP~CG~~T~~~h 32 (60)
T 2apo_B 21 CPKCGEKTVIPK 32 (60)
T ss_dssp CSSSCSBCBCCC
T ss_pred CcCCCCcCCCCC
Confidence 888888875543
No 37
>1pew_A JTO2, A lambda-6 type immunoglobulin light chain, domain; beta sheet, immune system; 1.60A {Homo sapiens} SCOP: b.1.1.1 PDB: 1cd0_A 1pw3_A 2cd0_A 2w0k_A 3b5g_A 3bdx_A* 2w0l_A
Probab=30.50 E-value=20 Score=23.11 Aligned_cols=10 Identities=20% Similarity=0.461 Sum_probs=8.6
Q ss_pred ccceEEEecc
Q 032503 44 YADGFYNCAG 53 (139)
Q Consensus 44 ~~~G~Y~C~~ 53 (139)
.+.|+|.|++
T Consensus 82 ~DsG~Y~C~~ 91 (109)
T 1pew_A 82 EDEADYYCQS 91 (109)
T ss_dssp GGCEEEEEEE
T ss_pred hhCEEEEEEE
Confidence 5889999986
No 38
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=30.16 E-value=30 Score=22.69 Aligned_cols=36 Identities=28% Similarity=0.372 Sum_probs=11.4
Q ss_pred CHHHHHHhhhCCCCCCCccCCCccccceEEEeccCCcc
Q 032503 20 SPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTA 57 (139)
Q Consensus 20 tp~qy~V~r~~gTE~pfsg~y~~~~~~G~Y~C~~Cg~p 57 (139)
+-|+|+|--..| ....|.-.....+-.|.|..||..
T Consensus 2 sre~~q~p~~~~--~~~~~g~~~~~~~v~Y~C~~CG~~ 37 (70)
T 1twf_L 2 SREGFQIPTNLD--AAAAGTSQARTATLKYICAECSSK 37 (70)
T ss_dssp -------------------------CCCCEECSSSCCE
T ss_pred CcccccCCCCcC--ccccccccCCCceEEEECCCCCCc
Confidence 446677654323 233333333335678999999987
No 39
>1vq8_1 50S ribosomal protein L37E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.2 PDB: 1vq4_1* 1vq5_1* 1vq6_1* 1vq7_1* 1s72_1* 1vq9_1* 1vqk_1* 1vql_1* 1vqm_1* 1vqn_1* 1vqo_1* 1vqp_1* 1yhq_1* 1yi2_1* 1yij_1* 1yit_1* 1yj9_1* 1yjn_1* 1yjw_1* 2otj_1* ...
Probab=29.47 E-value=25 Score=22.68 Aligned_cols=27 Identities=30% Similarity=0.680 Sum_probs=23.8
Q ss_pred EEEeccCCcccccCCccccCCCCC-ccC
Q 032503 48 FYNCAGCGTALYKSVTKFDSGCGW-PAF 74 (139)
Q Consensus 48 ~Y~C~~Cg~pLF~S~~Kf~Sg~GW-PSF 74 (139)
.=.|..||..-|.-..|.=+.||+ ||=
T Consensus 17 H~~CrRCG~~syH~qK~~Ca~CGygpa~ 44 (57)
T 1vq8_1 17 HTKCRRCGEKSYHTKKKVCSSCGFGKSA 44 (57)
T ss_dssp EEECTTTCSEEEETTTTEETTTCTTTCS
T ss_pred cccccccCChhhhccccccccccCCchh
Confidence 458999999999999999999999 873
No 40
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=29.42 E-value=23 Score=22.91 Aligned_cols=12 Identities=25% Similarity=0.559 Sum_probs=8.5
Q ss_pred eccCCcccccCC
Q 032503 51 CAGCGTALYKSV 62 (139)
Q Consensus 51 C~~Cg~pLF~S~ 62 (139)
|..||.+++++-
T Consensus 20 CP~CG~~t~~ah 31 (60)
T 2aus_D 20 CPVCGEKTKVAH 31 (60)
T ss_dssp CTTTCSBCEESS
T ss_pred CcCCCCccCCCC
Confidence 777888875543
No 41
>1eeq_A Kappa-4 immunoglobulin (light chain); protein stability, hydrogen bonds, immune system; 1.50A {Homo sapiens} SCOP: b.1.1.1 PDB: 1eeu_A 1lve_A 2lve_A 3lve_A 5lve_A 4lve_A 1efq_A 1qac_A 1ek3_A 2imm_A 1mvu_A 2ap2_A 1ap2_A 3bd3_A* 3bd4_A* 3bd5_A* 2imn_A 3dus_A* 3duu_A* 3dv4_A* ...
Probab=28.71 E-value=23 Score=22.94 Aligned_cols=11 Identities=18% Similarity=0.332 Sum_probs=9.0
Q ss_pred ccceEEEeccC
Q 032503 44 YADGFYNCAGC 54 (139)
Q Consensus 44 ~~~G~Y~C~~C 54 (139)
.+.|+|.|++-
T Consensus 87 ~DsG~Y~C~~~ 97 (114)
T 1eeq_A 87 EDVAVYYCQQY 97 (114)
T ss_dssp GGCEEEEEEEC
T ss_pred ccCEEEEEEEe
Confidence 58899999863
No 42
>2q20_A VK1 O18/O8 germline light chain variable domain; Al, light chain amyloidosis, amyloid, immunoglobulin, protein fibril; 1.30A {Homo sapiens} PDB: 2kqm_A 3cdf_A 3cdc_A 2kqn_A 3cdy_A 2q1e_A 3dvi_A 1igm_L 1bww_A 1b0w_A 1bre_A 1qp1_A 3dvf_A 1rei_A 1wtl_A 1ar2_A 1fgv_L 2bx5_A 2uzi_L* 1bvk_A ...
Probab=27.93 E-value=27 Score=22.43 Aligned_cols=11 Identities=18% Similarity=0.235 Sum_probs=9.1
Q ss_pred ccceEEEeccC
Q 032503 44 YADGFYNCAGC 54 (139)
Q Consensus 44 ~~~G~Y~C~~C 54 (139)
.+.|+|.|++-
T Consensus 83 ~DsG~Y~C~~~ 93 (109)
T 2q20_A 83 EDIATYYCQQY 93 (109)
T ss_dssp GGCEEEEEEEC
T ss_pred hhCEEEEEEEe
Confidence 58899999874
No 43
>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A
Probab=27.79 E-value=24 Score=25.60 Aligned_cols=22 Identities=23% Similarity=0.101 Sum_probs=14.7
Q ss_pred cccceEEEeccC--CcccccCCcc
Q 032503 43 LYADGFYNCAGC--GTALYKSVTK 64 (139)
Q Consensus 43 ~~~~G~Y~C~~C--g~pLF~S~~K 64 (139)
..+.|+|.|++. +..+|...+|
T Consensus 221 ~~D~G~Y~C~~~~~~~~~fg~gt~ 244 (257)
T 3gkz_A 221 AEDAASYFCHQWSSFPFTFGSGTK 244 (257)
T ss_dssp GGGCEEEEEEECSSSSCEECCCEE
T ss_pred hHHCEEEEEEEccCCceEEcCCEE
Confidence 358899999874 3445655554
No 44
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae}
Probab=27.78 E-value=7.3 Score=30.77 Aligned_cols=33 Identities=30% Similarity=0.575 Sum_probs=26.5
Q ss_pred cccceEEEeccCCcccccCCccccCCCCCccCCcc
Q 032503 43 LYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEG 77 (139)
Q Consensus 43 ~~~~G~Y~C~~Cg~pLF~S~~Kf~Sg~GWPSF~~~ 77 (139)
-.+.|.++|..||.-| .+.-.|.|.-|.+|...
T Consensus 37 D~erGE~VCsdCGLVL--EEriID~GPEWRAFsnD 69 (197)
T 3k1f_M 37 RFSEGDVVCALCGLVL--SDKLVDTRSEWRTFSNX 69 (197)
T ss_dssp EGGGTEEEETTTCBBC--CCCCBCHHHHHHHHHCC
T ss_pred eCCCCEEEEcCCCCCc--CCceeECCCCCcCcCCc
Confidence 3578999999999988 55567888889999753
No 45
>4a18_A RPL37, ribosomal protein L37; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_A 4a1b_A 4a1d_A
Probab=27.71 E-value=24 Score=24.90 Aligned_cols=27 Identities=30% Similarity=0.637 Sum_probs=23.9
Q ss_pred EEEeccCCcccccCCccccCCCCCccC
Q 032503 48 FYNCAGCGTALYKSVTKFDSGCGWPAF 74 (139)
Q Consensus 48 ~Y~C~~Cg~pLF~S~~Kf~Sg~GWPSF 74 (139)
.-.|..||.--|.-+.+.-+.||+||=
T Consensus 16 HtlCrRCG~~syH~qK~~Ca~CGyps~ 42 (94)
T 4a18_A 16 HTLCRRCGKATYHKQKLRCAACGYPDA 42 (94)
T ss_dssp EEECTTTCSEEEETTTTEESSSCGGGS
T ss_pred cceecCcCchhhhhccccccccCCcHH
Confidence 458999999999999999999999953
No 46
>2rqx_A PMRD, polymyxin B resistance protein; signaling protein; NMR {Klebsiella pneumoniae}
Probab=27.51 E-value=14 Score=25.83 Aligned_cols=21 Identities=24% Similarity=0.510 Sum_probs=12.6
Q ss_pred cccCCCCCCCCCCceeeeccc
Q 032503 106 HVFKGEGFKTPTDERHCVNSV 126 (139)
Q Consensus 106 HVF~~DG~p~ptg~RyCINs~ 126 (139)
+++.||=--+-..-|||||--
T Consensus 38 ~~k~GDlLsPL~dA~YCiNrn 58 (89)
T 2rqx_A 38 RLREGDKLTPLADARYCLNNN 58 (89)
T ss_dssp CCCTTCEEEECSSSCEEETTC
T ss_pred ccccccccccchhhhhhhcCC
Confidence 345554321236789999964
No 47
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=27.49 E-value=26 Score=21.42 Aligned_cols=17 Identities=35% Similarity=0.641 Sum_probs=13.2
Q ss_pred cceeEEEecCCCCCccc
Q 032503 90 GRRTEITCAACGGHMGH 106 (139)
Q Consensus 90 m~RtEv~C~~Cg~HLGH 106 (139)
..++++.|.+||.+--.
T Consensus 11 ~~~~~~~Cp~Cg~~~~~ 27 (57)
T 1qyp_A 11 LPTTKITCPKCGNDTAY 27 (57)
T ss_dssp SCEEECCCTTTCCSEEE
T ss_pred CCceEeECCCCCCCEEE
Confidence 56789999999975443
No 48
>3iz5_l 60S ribosomal protein L37 (L37E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_l 3izc_l 3izs_l 3o58_d 3o5h_d 3u5e_j 3u5i_j 4b6a_j 1s1i_Y 3jyw_Y
Probab=27.09 E-value=23 Score=24.91 Aligned_cols=26 Identities=31% Similarity=0.673 Sum_probs=23.9
Q ss_pred EEEeccCCcccccCCccccCCCCCcc
Q 032503 48 FYNCAGCGTALYKSVTKFDSGCGWPA 73 (139)
Q Consensus 48 ~Y~C~~Cg~pLF~S~~Kf~Sg~GWPS 73 (139)
.-.|..||.--|.-+.+.-+.||+||
T Consensus 16 HtlCrRCG~~syH~qK~~Ca~CGyps 41 (94)
T 3iz5_l 16 HTLCVRCGRRSFHLQKSTCSSCGYPA 41 (94)
T ss_dssp EEECTTTCSEEEEGGGTEETTTCSSC
T ss_pred cceecCcCchhhhcccccccccCCch
Confidence 45899999999999999999999996
No 49
>2z35_A T-cell receptor alpha-chain; immune receptor, immune system; 2.20A {Mus musculus} PDB: 2pxy_A 2z31_A 1ac6_A
Probab=26.41 E-value=25 Score=22.74 Aligned_cols=12 Identities=25% Similarity=0.337 Sum_probs=9.5
Q ss_pred cccceEEEeccC
Q 032503 43 LYADGFYNCAGC 54 (139)
Q Consensus 43 ~~~~G~Y~C~~C 54 (139)
..+.|+|.|++-
T Consensus 81 ~~DsG~Y~C~~~ 92 (112)
T 2z35_A 81 ESDSAVYYCALS 92 (112)
T ss_dssp STTCSEEEEEEE
T ss_pred hhhCEEEEEEEE
Confidence 348999999874
No 50
>3j21_e 50S ribosomal protein L37E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=26.17 E-value=30 Score=22.66 Aligned_cols=24 Identities=25% Similarity=0.783 Sum_probs=21.8
Q ss_pred EeccCCcccccCCccccCCCCC-cc
Q 032503 50 NCAGCGTALYKSVTKFDSGCGW-PA 73 (139)
Q Consensus 50 ~C~~Cg~pLF~S~~Kf~Sg~GW-PS 73 (139)
.|..||.--|.-..|.=+.||+ ||
T Consensus 19 lCrRCG~~syH~qK~~Ca~CGygps 43 (62)
T 3j21_e 19 RCRRCGRVSYNVKKGYCAACGFGRS 43 (62)
T ss_dssp BCSSSCSBCEETTTTEETTTCTTTC
T ss_pred eecccCcchhccccccccccCCchh
Confidence 7999999999999999999999 64
No 51
>2lo3_A SAGA-associated factor 73; zinc-finger, deubiquitination, transcription factor, SAGA CO transcription; NMR {Saccharomyces cerevisiae}
Probab=25.87 E-value=21 Score=21.89 Aligned_cols=14 Identities=29% Similarity=0.743 Sum_probs=10.8
Q ss_pred EEEeccCCcccccC
Q 032503 48 FYNCAGCGTALYKS 61 (139)
Q Consensus 48 ~Y~C~~Cg~pLF~S 61 (139)
.=+|..||.|+--|
T Consensus 17 YRvC~~CgkPi~ls 30 (44)
T 2lo3_A 17 YRVCEKCGKPLALT 30 (44)
T ss_dssp EEECTTTCCEEETT
T ss_pred chhhcccCCcchHH
Confidence 44899999998544
No 52
>3w0f_A Endonuclease 8-like 3; helix two turns helix, zinc finger, DNA binding, hydrolase; 2.00A {Mus musculus}
Probab=25.42 E-value=40 Score=27.60 Aligned_cols=70 Identities=16% Similarity=0.269 Sum_probs=37.7
Q ss_pred CCCHHHHHhcCCHHHHHHh----hhCCCCCCCccCCCccccceEEEeccCCcccccCCccccCCCCCccCCcccCCCeEE
Q 032503 9 QKTEEEWRAILSPEQFRIL----RQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPGAINR 84 (139)
Q Consensus 9 ~~~~~ewr~~Ltp~qy~V~----r~~gTE~pfsg~y~~~~~~G~Y~C~~Cg~pLF~S~~Kf~Sg~GWPSF~~~i~~~v~~ 84 (139)
.+++++|+..+..... |+ +..|+.-.|...++-..++ -|..||.++=. .+|-
T Consensus 212 ~Ls~~~~~~L~~ai~~-Vl~~~~~~~g~~g~~~~~l~VYgR~---pC~~CGt~I~~--~~~g------------------ 267 (287)
T 3w0f_A 212 QLSDKQACHLVKMTRD-FSILFYRCCKAGSAISKHCKVYKRP---NCDQCHSKITV--CRFG------------------ 267 (287)
T ss_dssp GSCHHHHHHHHHHHHH-HHHHHHHHHHHTCCGGGGCSSTTCS---BCTTTCCBCEE--ECSS------------------
T ss_pred cCCHHHHHHHHHHHHH-HHHHHHhccCCCCcccccEEEECCC---CCCCCCCEEEE--EEec------------------
Confidence 4677777765443322 21 2223333466666555454 79988876511 0000
Q ss_pred ccCCCcceeEEEecCCCCCccc
Q 032503 85 SPDPDGRRTEITCAACGGHMGH 106 (139)
Q Consensus 85 ~~D~sm~RtEv~C~~Cg~HLGH 106 (139)
+ ..|.-..|.+|.-|--|
T Consensus 268 --~--~gRsTyfCp~~~~~~~~ 285 (287)
T 3w0f_A 268 --E--NSRMTYFCPHCQKHHHH 285 (287)
T ss_dssp --T--TCCCEEECTTTSCC---
T ss_pred --C--CCCCEEECCCccccccc
Confidence 0 14888999999998766
No 53
>1j05_L T84.66 antibody, anti-CEA MAB T84.66, light chain; immunoglobulin, immune system; 1.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1qfw_L* 1qnz_L 3iy3_A 3iy4_A
Probab=25.07 E-value=30 Score=22.21 Aligned_cols=12 Identities=17% Similarity=0.205 Sum_probs=9.5
Q ss_pred cccceEEEeccC
Q 032503 43 LYADGFYNCAGC 54 (139)
Q Consensus 43 ~~~~G~Y~C~~C 54 (139)
..+.|+|.|++-
T Consensus 84 ~~DsG~Y~C~~~ 95 (111)
T 1j05_L 84 ADDVATYYCQQT 95 (111)
T ss_dssp GGGCEEEEEEEC
T ss_pred cccCEEEEEEEe
Confidence 358899999874
No 54
>2zkr_2 60S ribosomal protein L37E; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} SCOP: i.1.1.1
Probab=24.83 E-value=36 Score=24.03 Aligned_cols=32 Identities=25% Similarity=0.479 Sum_probs=25.7
Q ss_pred eEEEeccCCcccccCCccccCCCCCccCCccc
Q 032503 47 GFYNCAGCGTALYKSVTKFDSGCGWPAFYEGL 78 (139)
Q Consensus 47 G~Y~C~~Cg~pLF~S~~Kf~Sg~GWPSF~~~i 78 (139)
-.-.|..||..-|.-+-+.=+-||+|++...-
T Consensus 15 tH~lCrRCG~~sfH~qK~~CgkCGYpa~k~R~ 46 (97)
T 2zkr_2 15 THTLCRRCGSKAYHLQKSTCGKCGYPAKRKRK 46 (97)
T ss_dssp CEECCTTTCSSCEETTSCCBTTTCTTTSSCCC
T ss_pred CCCcCCCCCCccCcCccccCcccCCchHhccC
Confidence 34489999999997777777779999987653
No 55
>1sjv_A R9; camelids antibody, domain swapping, heavy chain antibody, AN; 1.94A {Lama glama} SCOP: b.1.1.1
Probab=24.53 E-value=40 Score=21.78 Aligned_cols=12 Identities=17% Similarity=0.194 Sum_probs=9.6
Q ss_pred ccceEEEeccCC
Q 032503 44 YADGFYNCAGCG 55 (139)
Q Consensus 44 ~~~G~Y~C~~Cg 55 (139)
.+.|+|.|+.-.
T Consensus 88 ~DsG~Y~C~~~~ 99 (114)
T 1sjv_A 88 EDTAVYYCYTHY 99 (114)
T ss_dssp GGCSEEEEEECC
T ss_pred HHCEEEEEeEEc
Confidence 578999998743
No 56
>2i24_N NEW antigen receptor PBLA8; immunoglobulin fold, immune system; 1.35A {Ginglymostoma cirratum} PDB: 2i25_N 2i27_N 2i26_N
Probab=24.16 E-value=20 Score=24.25 Aligned_cols=12 Identities=25% Similarity=0.611 Sum_probs=9.6
Q ss_pred ccccceEEEecc
Q 032503 42 KLYADGFYNCAG 53 (139)
Q Consensus 42 ~~~~~G~Y~C~~ 53 (139)
...+.|+|.|+.
T Consensus 74 ~~~DsG~Y~C~~ 85 (121)
T 2i24_N 74 TVKDSGTYRCKP 85 (121)
T ss_dssp CGGGCEEEEEEE
T ss_pred ChhhCEEEEEEE
Confidence 335889999987
No 57
>1x6m_A GFA, glutathione-dependent formaldehyde-activating ENZ; Zn-enzyme, 3_10 helix, lyase; 2.35A {Paracoccus denitrificans} SCOP: b.88.1.4 PDB: 1xa8_A*
Probab=24.00 E-value=36 Score=25.72 Aligned_cols=18 Identities=22% Similarity=0.576 Sum_probs=14.5
Q ss_pred cceEEEeccCCcccccCC
Q 032503 45 ADGFYNCAGCGTALYKSV 62 (139)
Q Consensus 45 ~~G~Y~C~~Cg~pLF~S~ 62 (139)
..-.|.|..||.+||...
T Consensus 95 ~~~r~FC~~CGs~l~~~~ 112 (196)
T 1x6m_A 95 PIQRHRCRDCGVHMYGRI 112 (196)
T ss_dssp SEEEEEETTTCCEEEEEE
T ss_pred CeeeEECCCCCCcCCccc
Confidence 345789999999998754
No 58
>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens}
Probab=23.92 E-value=29 Score=25.59 Aligned_cols=21 Identities=29% Similarity=0.534 Sum_probs=14.0
Q ss_pred ccceEEEecc--CCcccccCCcc
Q 032503 44 YADGFYNCAG--CGTALYKSVTK 64 (139)
Q Consensus 44 ~~~G~Y~C~~--Cg~pLF~S~~K 64 (139)
.+.|+|.|++ |+.-+|...++
T Consensus 242 ~DsG~Y~C~a~~~~~~~fg~Gt~ 264 (268)
T 1x9q_A 242 EDTGIYYCTGASYGMEYLGQGTS 264 (268)
T ss_dssp GGCEEEEEEEEETTEEEECCCEE
T ss_pred HHCEEEEEEEccCCccEECCCEE
Confidence 4789999976 45555554443
No 59
>1dxg_A Desulforedoxin; non-heme iron protein, rubredoxin type metal center, electron transport; 1.80A {Desulfovibrio gigas} SCOP: g.41.5.2 PDB: 1dcd_A 1dhg_A 1cfw_A 2lk5_A 2lk6_A
Probab=23.78 E-value=36 Score=19.20 Aligned_cols=15 Identities=27% Similarity=0.753 Sum_probs=11.6
Q ss_pred cceEEEeccCCcccc
Q 032503 45 ADGFYNCAGCGTALY 59 (139)
Q Consensus 45 ~~G~Y~C~~Cg~pLF 59 (139)
...+|.|..||+-+-
T Consensus 3 ~~~fY~C~~CGnive 17 (36)
T 1dxg_A 3 EGDVYKCELCGQVVK 17 (36)
T ss_dssp TTCEEECTTTCCEEE
T ss_pred cccEEEcCCCCcEEE
Confidence 456899999998664
No 60
>2e27_L Anti-ciguatoxin antibody, light chain; immunoglobulin fold, immune system; HET: AB0; 1.70A {Mus musculus} PDB: 3iy1_A
Probab=23.56 E-value=27 Score=23.21 Aligned_cols=12 Identities=17% Similarity=0.221 Sum_probs=9.5
Q ss_pred cccceEEEeccC
Q 032503 43 LYADGFYNCAGC 54 (139)
Q Consensus 43 ~~~~G~Y~C~~C 54 (139)
..+.|+|.|++-
T Consensus 82 ~~DsG~Y~C~~~ 93 (119)
T 2e27_L 82 PEDAATYYCLQY 93 (119)
T ss_dssp GGGCEEEEEEEC
T ss_pred hHHCEEEEEEEc
Confidence 358899999874
No 61
>1qfw_M FV, antibody (anti beta subunit) (light chain); glycoprotein hormone; HET: NAG; 3.50A {Mus musculus} SCOP: b.1.1.1
Probab=23.28 E-value=32 Score=21.99 Aligned_cols=11 Identities=18% Similarity=0.244 Sum_probs=9.1
Q ss_pred ccceEEEeccC
Q 032503 44 YADGFYNCAGC 54 (139)
Q Consensus 44 ~~~G~Y~C~~C 54 (139)
.+.|+|.|++-
T Consensus 81 ~DsG~Y~C~~~ 91 (108)
T 1qfw_M 81 EDFADYHCGQT 91 (108)
T ss_dssp TCCSEEEEEEC
T ss_pred hhCEEEEEEEc
Confidence 48899999874
No 62
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=22.50 E-value=26 Score=16.18 Aligned_cols=10 Identities=30% Similarity=0.836 Sum_probs=8.1
Q ss_pred EEEeccCCcc
Q 032503 48 FYNCAGCGTA 57 (139)
Q Consensus 48 ~Y~C~~Cg~p 57 (139)
.|.|..||..
T Consensus 2 ~~~C~~C~k~ 11 (29)
T 2m0f_A 2 PLKCRECGKQ 11 (29)
T ss_dssp CEECTTTSCE
T ss_pred CccCCCCCCc
Confidence 4889999875
No 63
>3r8b_B G5-8, enterotoxin type B; immunoglobulin-like, OB-fold, toxin-immune system complex; 2.95A {Rattus norvegicus}
Probab=21.65 E-value=35 Score=22.81 Aligned_cols=10 Identities=30% Similarity=0.581 Sum_probs=8.6
Q ss_pred ccceEEEecc
Q 032503 44 YADGFYNCAG 53 (139)
Q Consensus 44 ~~~G~Y~C~~ 53 (139)
.+.|+|.|+.
T Consensus 89 ~Dsg~Y~C~~ 98 (125)
T 3r8b_B 89 SQTSVYFCAS 98 (125)
T ss_dssp GGCEEEEEEE
T ss_pred hhCEEEEEEE
Confidence 5789999986
No 64
>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D
Probab=21.45 E-value=34 Score=24.86 Aligned_cols=12 Identities=17% Similarity=-0.059 Sum_probs=9.6
Q ss_pred cccceEEEeccC
Q 032503 43 LYADGFYNCAGC 54 (139)
Q Consensus 43 ~~~~G~Y~C~~C 54 (139)
..+.|+|.|++-
T Consensus 217 ~~D~G~Y~C~~~ 228 (256)
T 3umt_A 217 SEDFVDYYCLQY 228 (256)
T ss_dssp GGGCSEEEEEEC
T ss_pred hhHCEEEEEEEe
Confidence 458899999873
No 65
>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus}
Probab=21.07 E-value=34 Score=20.99 Aligned_cols=13 Identities=31% Similarity=0.593 Sum_probs=10.0
Q ss_pred cccceEEEeccCC
Q 032503 43 LYADGFYNCAGCG 55 (139)
Q Consensus 43 ~~~~G~Y~C~~Cg 55 (139)
..+.|.|.|.+-.
T Consensus 80 ~~D~G~Y~C~~~n 92 (108)
T 3m45_A 80 LSDEGQYTCSLFT 92 (108)
T ss_dssp GGGCEEEEEEECS
T ss_pred hhHCeEEEEEEEc
Confidence 3588999998744
No 66
>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}
Probab=20.72 E-value=35 Score=24.80 Aligned_cols=20 Identities=10% Similarity=0.100 Sum_probs=12.8
Q ss_pred cccceEEEeccC--CcccccCC
Q 032503 43 LYADGFYNCAGC--GTALYKSV 62 (139)
Q Consensus 43 ~~~~G~Y~C~~C--g~pLF~S~ 62 (139)
..+.|+|.|++- +..+|...
T Consensus 229 ~~DsG~Y~C~~~~~~~~~~g~g 250 (256)
T 3juy_B 229 PEDFALYYCQVYGASSYTFGQG 250 (256)
T ss_dssp GGGCSEEEEEECCSSCCEECCC
T ss_pred HhHCEEEEEEEeeCCCceEcCC
Confidence 358899999773 33444443
No 67
>2xt1_B Camelid VHH 9; viral protein-immune system complex; 1.32A {Vicugna pacos} PDB: 2xv6_B 2xxc_B 2xxm_B
Probab=20.52 E-value=43 Score=22.26 Aligned_cols=13 Identities=23% Similarity=0.465 Sum_probs=10.1
Q ss_pred ccccceEEEeccC
Q 032503 42 KLYADGFYNCAGC 54 (139)
Q Consensus 42 ~~~~~G~Y~C~~C 54 (139)
...+.|+|.|+.-
T Consensus 89 ~~~DsG~Y~C~~~ 101 (121)
T 2xt1_B 89 KPEDTAMYYCKAS 101 (121)
T ss_dssp CGGGCEEEEEEET
T ss_pred CHHHCEEEEEEEE
Confidence 3358899999875
No 68
>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X
Probab=20.41 E-value=35 Score=21.81 Aligned_cols=12 Identities=33% Similarity=0.775 Sum_probs=9.6
Q ss_pred cccceEEEeccC
Q 032503 43 LYADGFYNCAGC 54 (139)
Q Consensus 43 ~~~~G~Y~C~~C 54 (139)
..+.|.|.|.+-
T Consensus 83 ~~DsG~Y~C~a~ 94 (122)
T 3s35_X 83 RSDQGLYTCAAS 94 (122)
T ss_dssp GGGCEEEEEEEE
T ss_pred cccCEEEEEEEc
Confidence 358899999874
No 69
>3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology, IGSF, cell SU receptor signalling, glycosylation, membrane protein; HET: NAG; 2.90A {Homo sapiens}
Probab=20.39 E-value=36 Score=21.19 Aligned_cols=12 Identities=25% Similarity=0.512 Sum_probs=9.6
Q ss_pred cccceEEEeccC
Q 032503 43 LYADGFYNCAGC 54 (139)
Q Consensus 43 ~~~~G~Y~C~~C 54 (139)
..+.|+|.|.+-
T Consensus 88 ~~D~G~Y~C~v~ 99 (118)
T 3udw_C 88 VEDEGNYTCLFV 99 (118)
T ss_dssp GGGCEEEEEEEE
T ss_pred hHHCeEEEEEEE
Confidence 358999999863
No 70
>4f87_A Plycb; lysin, bacteriophage, antimicrobial protein, viral protein; 1.40A {Streptococcus phage C1} PDB: 4f88_A
Probab=20.15 E-value=71 Score=20.87 Aligned_cols=38 Identities=24% Similarity=0.451 Sum_probs=23.9
Q ss_pred eeEEEecCCCCCcccccCCCCCCCCCCceeeeccceeee
Q 032503 92 RTEITCAACGGHMGHVFKGEGFKTPTDERHCVNSVSIKF 130 (139)
Q Consensus 92 RtEv~C~~Cg~HLGHVF~~DG~p~ptg~RyCINs~sL~F 130 (139)
.+.|.-.+-.+-.|.+|..|| ...-|-|--||++-+-.
T Consensus 3 kinvnvenvsgvqgflfhtdg-kesygyrafingveigi 40 (72)
T 4f87_A 3 KINVNVENVSGVQGFLFHTDG-KESYGYRAFINGVEIGI 40 (72)
T ss_dssp --------CCSCCEEEEECCS-SSCCCEEEEETTEEEEE
T ss_pred ceeeeeeecccceEEEEecCC-ccccchhheecceEecc
Confidence 344444455667788888788 56789999999987653
No 71
>1i8k_A Epidermal growth factor receptor antibody MR1SCFV light chain; antibody-peptide complex, immunoglobulin fold, type II' beta turn., immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 PDB: 1i8i_A
Probab=20.01 E-value=35 Score=21.77 Aligned_cols=12 Identities=25% Similarity=0.276 Sum_probs=9.5
Q ss_pred cccceEEEeccC
Q 032503 43 LYADGFYNCAGC 54 (139)
Q Consensus 43 ~~~~G~Y~C~~C 54 (139)
..+.|+|.|++-
T Consensus 80 ~~DsG~Y~C~~~ 91 (107)
T 1i8k_A 80 SEDVGDYYCLQS 91 (107)
T ss_dssp GGGCEEEEEEEC
T ss_pred HHHCEEEEEEEe
Confidence 358899999864
Done!