BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032504
(139 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1F7S|A Chain A, Crystal Structure Of Adf1 From Arabidopsis Thaliana
Length = 139
Score = 258 bits (658), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 119/139 (85%), Positives = 133/139 (95%)
Query: 1 MANAASGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASL 60
MANAASGMAVHDDCKL+FLELKAKRT+RFIV+KIEEKQKQV+VEK+G+P QTYE+FAA L
Sbjct: 1 MANAASGMAVHDDCKLRFLELKAKRTHRFIVYKIEEKQKQVVVEKVGQPIQTYEEFAACL 60
Query: 61 PAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVE 120
PA+ECRYA+YD+DFVTAENCQKS+IFFIAW PD A+VRSKMIYASSKDRFKRELDGIQVE
Sbjct: 61 PADECRYAIYDFDFVTAENCQKSKIFFIAWCPDIAKVRSKMIYASSKDRFKRELDGIQVE 120
Query: 121 LQATDPSEMGLDVFKDRAN 139
LQATDP+EM LDVF+ RAN
Sbjct: 121 LQATDPTEMDLDVFRSRAN 139
>pdb|1AHQ|A Chain A, Recombinant Actophorin
Length = 137
Score = 142 bits (358), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 64/133 (48%), Positives = 93/133 (69%), Gaps = 1/133 (0%)
Query: 6 SGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEEC 65
SG+AV DDC KF ELK +R++ FK+ +V+VE +G P TYEDF + LP +C
Sbjct: 1 SGIAVSDDCVQKFNELKLGHQHRYVTFKMNASNTEVVVEHVGGPNATYEDFKSQLPERDC 60
Query: 66 RYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATD 125
RYA++DY+F + Q+++I FI W+PD+A ++SKM+Y S+KD K++L GIQVE+QATD
Sbjct: 61 RYAIFDYEF-QVDGGQRNKITFILWAPDSAPIKSKMMYTSTKDSIKKKLVGIQVEVQATD 119
Query: 126 PSEMGLDVFKDRA 138
+E+ D +RA
Sbjct: 120 AAEISEDAVSERA 132
>pdb|1CNU|A Chain A, Phosphorylated Actophorin From Acantamoeba Polyphaga
Length = 137
Score = 140 bits (354), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 63/132 (47%), Positives = 92/132 (69%), Gaps = 1/132 (0%)
Query: 7 GMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECR 66
G+AV DDC KF ELK +R++ FK+ +V+VE +G P TYEDF + LP +CR
Sbjct: 2 GIAVSDDCVQKFNELKLGHQHRYVTFKMNASNTEVVVEHVGGPNATYEDFKSQLPERDCR 61
Query: 67 YAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDP 126
YA++DY+F + Q+++I FI W+PD+A ++SKM+Y S+KD K++L GIQVE+QATD
Sbjct: 62 YAIFDYEF-QVDGGQRNKITFILWAPDSAPIKSKMMYTSTKDSIKKKLVGIQVEVQATDA 120
Query: 127 SEMGLDVFKDRA 138
+E+ D +RA
Sbjct: 121 AEISEDAVSERA 132
>pdb|1CFY|A Chain A, Yeast Cofilin, Monoclinic Crystal Form
pdb|1CFY|B Chain B, Yeast Cofilin, Monoclinic Crystal Form
pdb|1QPV|A Chain A, Yeast Cofilin
pdb|1COF|A Chain A, Yeast Cofilin, Orthorhombic Crystal Form
Length = 143
Score = 111 bits (278), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 54/136 (39%), Positives = 87/136 (63%), Gaps = 4/136 (2%)
Query: 6 SGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIV-EKLGEPTQTYEDFAASLPAEE 64
SG+AV D+ F +LK + Y+FI+F + + + +++V E +P+ Y+ F LP +
Sbjct: 4 SGVAVADESLTAFNDLKLGKKYKFILFGLNDAKTEIVVKETSTDPS--YDAFLEKLPEND 61
Query: 65 CRYAVYDYDF-VTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQA 123
C YA+YD+++ + ++S+I F WSPDTA VRSKM+YASSKD +R L+G+ ++Q
Sbjct: 62 CLYAIYDFEYEINGNEGKRSKIVFFTWSPDTAPVRSKMVYASSKDALRRALNGVSTDVQG 121
Query: 124 TDPSEMGLDVFKDRAN 139
TD SE+ D +R +
Sbjct: 122 TDFSEVSYDSVLERVS 137
>pdb|2I2Q|A Chain A, Fission Yeast Cofilin
Length = 137
Score = 110 bits (275), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 51/124 (41%), Positives = 83/124 (66%), Gaps = 2/124 (1%)
Query: 6 SGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEEC 65
SG+ V +C F ELK ++ R++VFK+ + + +++VEK + ++ F LP ++C
Sbjct: 4 SGVKVSPECLEAFQELKLGKSLRYVVFKMNDTKTEIVVEK-KSTDKDFDTFLGDLPEKDC 62
Query: 66 RYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATD 125
RYA+YD++F E +++I FI+WSPD A ++SKM+Y+SSKD +R GI ++QATD
Sbjct: 63 RYAIYDFEFNLGEGV-RNKIIFISWSPDVAPIKSKMVYSSSKDTLRRAFTGIGTDIQATD 121
Query: 126 PSEM 129
SE+
Sbjct: 122 FSEV 125
>pdb|2L72|A Chain A, Solution Structure And Dynamics Of Adf From Toxoplasma
Gondii (Tgadf)
Length = 139
Score = 92.8 bits (229), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 53/127 (41%), Positives = 77/127 (60%), Gaps = 17/127 (13%)
Query: 5 ASGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEE 64
ASGM V ++C +F ELK ++T ++IVFKIE +++VEK G+ ++F +LPA +
Sbjct: 23 ASGMGVDENCVARFNELKIRKTVKWIVFKIE--NTKIVVEKDGK--GNADEFRGALPAND 78
Query: 65 CRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDG-IQVELQA 123
CR+ VYD ++I F+ W PD A V+ +M YASSKD ++LDG V L+A
Sbjct: 79 CRFGVYDCG---------NKIQFVLWCPDNAPVKPRMTYASSKDALLKKLDGATAVALEA 129
Query: 124 TDPSEMG 130
EMG
Sbjct: 130 ---HEMG 133
>pdb|1TVJ|A Chain A, Solution Structure Of Chick Cofilin
Length = 166
Score = 87.4 bits (215), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/153 (35%), Positives = 88/153 (57%), Gaps = 24/153 (15%)
Query: 5 ASGMAVHDDCKLKFLELKAKRTY---------RFIVFKIEEKQKQVIVEK-----LGEPT 50
ASG+ V+D+ F ++K +++ + ++F + + +KQ+IVE+ +G+
Sbjct: 2 ASGVTVNDEVIKVFNDMKVRKSSTPEEIKKRKKAVLFCLSDDKKQIIVEEAKQILVGDIG 61
Query: 51 QTYED----FAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASS 106
T ED F LP +CRYA+YD + T E+ +K + FI W+P++A ++SKMIYASS
Sbjct: 62 DTVEDPYTAFVKLLPLNDCRYALYDATYETKES-KKEDLVFIFWAPESAPLKSKMIYASS 120
Query: 107 KDRFKRELDGIQVELQATDPSEMGLDVFKDRAN 139
KD K++ GI+ E Q GLD KDR+
Sbjct: 121 KDAIKKKFTGIKHEWQVN-----GLDDIKDRST 148
>pdb|1Q8G|A Chain A, Nmr Structure Of Human Cofilin
pdb|1Q8X|A Chain A, Nmr Structure Of Human Cofilin
pdb|3J0S|M Chain M, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|O Chain O, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|N Chain N, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|Q Chain Q, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|P Chain P, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|S Chain S, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|R Chain R, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|U Chain U, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|T Chain T, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|W Chain W, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|V Chain V, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|X Chain X, Remodeling Of Actin Filaments By Adf Cofilin Proteins
Length = 166
Score = 86.7 bits (213), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 52/138 (37%), Positives = 84/138 (60%), Gaps = 19/138 (13%)
Query: 5 ASGMAVHDDCKLKFLELKAKRTY---------RFIVFKIEEKQKQVIVEK-----LGEPT 50
ASG+AV D F ++K +++ + ++F + E +K +I+E+ +G+
Sbjct: 2 ASGVAVSDGVIKVFNDMKVRKSSTPEEVKKRKKAVLFCLSEDKKNIILEEGKEILVGDVG 61
Query: 51 QTYED----FAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASS 106
QT +D F LP ++CRYA+YD + T E+ +K + FI W+P++A ++SKMIYASS
Sbjct: 62 QTVDDPYATFVKMLPDKDCRYALYDATYETKES-KKEDLVFIFWAPESAPLKSKMIYASS 120
Query: 107 KDRFKRELDGIQVELQAT 124
KD K++L GI+ ELQA
Sbjct: 121 KDAIKKKLTGIKHELQAN 138
>pdb|1AK6|A Chain A, Destrin, Nmr, Minimized Average Structure
pdb|1AK7|A Chain A, Destrin, Nmr, 20 Structures
Length = 174
Score = 85.1 bits (209), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 80/146 (54%), Gaps = 19/146 (13%)
Query: 2 ANAASGMAVHDDCKLKFLELKA---------KRTYRFIVFKIEEKQKQVIVEKLGEP--- 49
N+ASG+ V D+ F ++K K+ + ++F + +K +IVE+ E
Sbjct: 8 GNSASGVQVADEVCRIFYDMKVRKCSTPEEIKKRKKAVIFCLSADKKCIIVEEGKEILVG 67
Query: 50 ------TQTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIY 103
T ++ F LP ++CRYA+YD F T E+ +K + F W+P+ A ++SKMIY
Sbjct: 68 DVGVTITDPFKHFVGMLPEKDCRYALYDASFETKES-RKEELMFFLWAPELAPLKSKMIY 126
Query: 104 ASSKDRFKRELDGIQVELQATDPSEM 129
ASSKD K++ GI+ E QA P ++
Sbjct: 127 ASSKDAIKKKFQGIKHECQANGPEDL 152
>pdb|2XFA|A Chain A, Crystal Structure Of Plasmodium Berghei Actin
Depolymerization Factor 2
pdb|2XFA|B Chain B, Crystal Structure Of Plasmodium Berghei Actin
Depolymerization Factor 2
Length = 148
Score = 79.7 bits (195), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 70/129 (54%), Gaps = 5/129 (3%)
Query: 1 MANAASGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVI--VEKLGEPT---QTYED 55
+ + SG+ V D+C +F LK K ++I++KIE +K V+ +E E T
Sbjct: 3 LGSMVSGVNVSDECIYEFNRLKVKHLNKYIIYKIENLEKIVVDVLEHDMELTSLDNIIMR 62
Query: 56 FAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELD 115
+L ECRY + D T E + RI+FI WSP ++ + KM+YA+SK+ R+++
Sbjct: 63 IKNNLKNTECRYIIADMPIPTPEGVLRDRIYFIFWSPGLSKPKEKMLYAASKESLVRKIN 122
Query: 116 GIQVELQAT 124
GI L+ T
Sbjct: 123 GIFKSLEIT 131
>pdb|2LJ8|A Chain A, Solution Structure Of AdfCOFILIN FROM TRYPANOSOMA BRUCEI
Length = 144
Score = 70.9 bits (172), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 74/129 (57%), Gaps = 6/129 (4%)
Query: 4 AASGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAE 63
A SG++V D+C +L+ K++ R+++ I + QK + V+ +GE ++ F ++
Sbjct: 10 AMSGVSVADECVTALNDLRHKKS-RYVIMHIVD-QKSIAVKTIGERGANFDQFIEAIDKN 67
Query: 64 ECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQA 123
YA +D+++ T + + ++ I+W+PD+ R+KM+Y+SS+D G Q +QA
Sbjct: 68 VPCYAAFDFEYTTNDG-PRDKLILISWNPDSGAPRTKMLYSSSRDALVPLTQGFQ-GIQA 125
Query: 124 TDPSEMGLD 132
D S GLD
Sbjct: 126 NDAS--GLD 132
>pdb|2KVK|A Chain A, Solution Structure Of AdfCOFILIN (LDCOF) FROM LEISHMANIA
DONOVANI
Length = 144
Score = 62.4 bits (150), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 70/129 (54%), Gaps = 5/129 (3%)
Query: 4 AASGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAE 63
A SG+ + + + +L+ K++ R+++ I K++ V ++GE + Y D E
Sbjct: 2 AISGVTLEESVRGAIDDLRMKKS-RYVMMCIGADGKKIEVTEVGERSVNYTDLKEKFSTE 60
Query: 64 ECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQA 123
+ Y +D+++ A ++ ++ I W PDTAR R KM+Y++S+D +G + +QA
Sbjct: 61 KPCYVAFDFEYNDA-GSKREKLILIQWIPDTARPREKMMYSASRDALSSVSEG-YLPIQA 118
Query: 124 TDPSEMGLD 132
D E GLD
Sbjct: 119 ND--ESGLD 125
>pdb|1M4J|A Chain A, Crystal Structure Of The N-Terminal Adf-H Domain Of Mouse
Twinfilin Isoform-1
pdb|1M4J|B Chain B, Crystal Structure Of The N-Terminal Adf-H Domain Of Mouse
Twinfilin Isoform-1
Length = 142
Score = 55.8 bits (133), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 69/134 (51%), Gaps = 7/134 (5%)
Query: 6 SGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYE-DFAA-SLPAE 63
+G+ +D K F R ++ + KI + +Q++V P+ ++E D+ + LP
Sbjct: 5 TGIQASEDVKEIFAR---ARNGKYRLLKISIENEQLVVGSCSPPSDSWEQDYDSFVLPLL 61
Query: 64 ECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDG--IQVEL 121
E + Y + ++N Q FIAWSPD + VR KM+YA+++ K+E G I+ E+
Sbjct: 62 EDKQPCYVLFRLDSQNAQGYEWIFIAWSPDHSHVRQKMLYAATRATLKKEFGGGHIKDEV 121
Query: 122 QATDPSEMGLDVFK 135
T ++ L +K
Sbjct: 122 FGTVKEDVSLHGYK 135
>pdb|3Q2B|A Chain A, Crystal Structure Of An Actin Depolymerizing Factor
Length = 124
Score = 53.1 bits (126), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 61/117 (52%), Gaps = 15/117 (12%)
Query: 6 SGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAE-- 63
SG+ V+D+C +F +K ++T +I+F I+ ++I+ G T T + S+
Sbjct: 5 SGIRVNDNCVTEFNNMKIRKTCGWIIFVIQ--NCEIIIHSKGAST-TLTELVQSIDKNNE 61
Query: 64 -ECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQV 119
+C Y V+D S+I F ++ +++ R +M YASSK ++++G+ V
Sbjct: 62 IQCAYVVFD---------AVSKIHFFMYARESSNSRDRMTYASSKQAILKKIEGVNV 109
>pdb|2VAC|A Chain A, Structure Of N-Terminal Actin Depolymerizing Factor
Homology (Adf-H) Domain Of Human Twinfilin-2
Length = 134
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 62/119 (52%), Gaps = 11/119 (9%)
Query: 8 MAVHDDCKLKFLELKAK-RTYRFIVFKIEEKQKQVIV--EKLGEPTQTYEDFAASLP--- 61
M +H +LK KA+ + R I IE++Q + E +G Q Y+ A LP
Sbjct: 2 MGIHATEELKEFFAKARAGSVRLIKVVIEDEQLVLGASQEPVGRWDQDYD--RAVLPLLD 59
Query: 62 AEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVE 120
A++ Y +Y D ++N Q F+AWSPD + VR KM+YA+++ K+E G ++
Sbjct: 60 AQQPCYLLYRLD---SQNAQGFEWLFLAWSPDNSPVRLKMLYAATRATVKKEFGGGHIK 115
>pdb|2XF1|A Chain A, Crystal Structure Of Plasmodium Falciparum Actin
Depolymerization Factor 1
Length = 124
Score = 48.9 bits (115), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 61/118 (51%), Gaps = 15/118 (12%)
Query: 6 SGMAVHDDCKLKFLELKAKRT-YRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAE- 63
SG+ V+D+C +F +K ++T +I+F I+ ++I+ G T T + S+
Sbjct: 5 SGIRVNDNCVTEFNNMKIRKTCXGWIIFVIQNXC-EIIIHSKGAST-TLTELVQSIDKNN 62
Query: 64 --ECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQV 119
+C Y V+D S+I F ++ +++ R +M YASSK ++++G+ V
Sbjct: 63 EIQCAYVVFD---------AVSKIHFFMYARESSNSRDRMTYASSKQAILKKIEGVNV 111
>pdb|3L50|A Chain A, The Crystal Structure Of Human Glia Maturation Factor,
Gamma (Gmfg)
pdb|3L50|B Chain B, The Crystal Structure Of Human Glia Maturation Factor,
Gamma (Gmfg)
Length = 136
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 52/97 (53%), Gaps = 2/97 (2%)
Query: 30 IVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIA 89
I+ K+++ ++ V++E+ + + E+ LP + R+ VY Y +V + + FI
Sbjct: 28 IIMKVDKDRQMVVLEEEFQ-NISPEELKMELPERQPRFVVYSYKYVHDDGRVSYPLCFIF 86
Query: 90 WSPDTARVRSKMIYASSKDRFKRELDGIQV-ELQATD 125
SP + +M+YA SK+R + + +V E++ TD
Sbjct: 87 SSPVGCKPEQQMMYAGSKNRLVQTAELTKVFEIRTTD 123
>pdb|1WFS|A Chain A, Solution Structure Of Glia Maturation Factor-Gamma From
Mus Musculus
Length = 151
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 55/110 (50%), Gaps = 10/110 (9%)
Query: 25 RTYRF--------IVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVT 76
R +RF I+ K+++ ++ V++E + + E+ LP + R+ VY Y +V
Sbjct: 25 RKFRFRKETNNAAIIMKVDKDRQMVVLEDELQ-NISPEELKLELPERQPRFVVYSYKYVH 83
Query: 77 AENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQV-ELQATD 125
+ + FI SP + +M+YA SK+R + + +V E++ TD
Sbjct: 84 DDGRVSYPLCFIFSSPVGCKPEQQMMYAGSKNRLVQTAELTKVFEIRTTD 133
>pdb|1VKK|A Chain A, Crystal Structure Of Glia Maturation Factor-Gamma (Gmfg)
From Mus Musculus At 1.50 A Resolution
Length = 154
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 55/110 (50%), Gaps = 10/110 (9%)
Query: 25 RTYRF--------IVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVT 76
R +RF I+ K+++ ++ V++E + + E+ LP + R+ VY Y +V
Sbjct: 31 RKFRFRKETNNAAIIMKVDKDRQMVVLEDELQ-NISPEELKLELPERQPRFVVYSYKYVH 89
Query: 77 AENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQV-ELQATD 125
+ + FI SP + +M+YA SK+R + + +V E++ TD
Sbjct: 90 DDGRVSYPLCFIFSSPVGCKPEQQMMYAGSKNRLVQTAELTKVFEIRTTD 139
>pdb|1V6F|A Chain A, Solution Structure Of Glia Maturation Factor-Beta From Mus
Musculus
Length = 151
Score = 34.3 bits (77), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 45/94 (47%), Gaps = 9/94 (9%)
Query: 25 RTYRF--------IVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVT 76
R +RF I+ KI++ ++ V++++ E ++ LP + R+ VY Y +
Sbjct: 25 RKFRFRKETHNAAIIMKIDKDERLVVLDEELEGVSP-DELKDELPERQPRFIVYSYKYQH 83
Query: 77 AENCQKSRIFFIAWSPDTARVRSKMIYASSKDRF 110
+ + FI SP + +M+YA SK++
Sbjct: 84 DDGRVSYPLCFIFSSPVGCKPEQQMMYAGSKNKL 117
>pdb|2D8B|A Chain A, Solution Structure Of The Second Tandem Cofilin-Domain Of
Mouse Twinfilin
Length = 166
Score = 31.6 bits (70), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 42/89 (47%), Gaps = 2/89 (2%)
Query: 19 LELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAE 78
LE +K+ ++ +I+ K + +I+ E T+ D +P + RY + Y
Sbjct: 37 LEKLSKKQLNYVQLEIDIKNETIILANT-ENTE-LRDLPKRIPKDSARYHFFLYKHSHEG 94
Query: 79 NCQKSRIFFIAWSPDTARVRSKMIYASSK 107
+ +S +F + T +R +M+Y+S K
Sbjct: 95 DYLESVVFIYSMPGYTCSIRERMLYSSCK 123
>pdb|3DAW|B Chain B, Structure Of The Actin-Depolymerizing Factor Homology
Domain In Complex With Actin
Length = 164
Score = 31.2 bits (69), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 42/89 (47%), Gaps = 2/89 (2%)
Query: 19 LELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAE 78
LE +K+ ++ +I+ K + +I+ E T+ D +P + RY + Y
Sbjct: 32 LEKLSKKQLNYVQLEIDIKNETIILAN-TENTEL-RDLPKRIPKDSARYHFFLYKHSHEG 89
Query: 79 NCQKSRIFFIAWSPDTARVRSKMIYASSK 107
+ +S +F + T +R +M+Y+S K
Sbjct: 90 DYLESVVFIYSMPGYTCSIRERMLYSSCK 118
>pdb|2HD7|A Chain A, Solution Structure Of C-Teminal Domain Of Twinfilin-1
Length = 142
Score = 31.2 bits (69), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 42/89 (47%), Gaps = 2/89 (2%)
Query: 19 LELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAE 78
LE +K+ ++ +I+ K + +I+ E T+ D +P + RY + Y
Sbjct: 16 LEKLSKKQLNYVQLEIDIKNETIILAN-TENTEL-RDLPKRIPKDSARYHFFLYKHSHEG 73
Query: 79 NCQKSRIFFIAWSPDTARVRSKMIYASSK 107
+ +S +F + T +R +M+Y+S K
Sbjct: 74 DYLESVVFIYSMPGYTCSIRERMLYSSCK 102
>pdb|1VPK|A Chain A, Crystal Structure Of Dna Polymerase Iii, Beta Subunit
(Tm0262) From Thermotoga Maritima At 2.00 A Resolution
Length = 378
Score = 26.9 bits (58), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 17/23 (73%)
Query: 100 KMIYASSKDRFKRELDGIQVELQ 122
K+I+A++KD F R L+G+ EL
Sbjct: 152 KVIFAAAKDEFMRNLNGVFWELH 174
>pdb|2W0I|A Chain A, Structure Of C-Terminal Actin Depolymerizing Factor
Homology (Adf-H) Domain Of Human Twinfilin-2
Length = 135
Score = 26.6 bits (57), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 16/71 (22%), Positives = 32/71 (45%), Gaps = 4/71 (5%)
Query: 48 EPTQTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSK 107
EPT + + +P + RY + Y + +S +F + ++ +M+Y+S K
Sbjct: 40 EPTDVAQ-LPSRVPRDAARYHFFLYKHTHEGDPLESVVFIYSMPGYKCSIKERMLYSSCK 98
Query: 108 DRFKRELDGIQ 118
R LD ++
Sbjct: 99 SRL---LDSVE 106
>pdb|2X06|A Chain A, Sulfolactate Dehydrogenase From Methanocaldococcus
Jannaschii
pdb|2X06|B Chain B, Sulfolactate Dehydrogenase From Methanocaldococcus
Jannaschii
pdb|2X06|C Chain C, Sulfolactate Dehydrogenase From Methanocaldococcus
Jannaschii
pdb|2X06|D Chain D, Sulfolactate Dehydrogenase From Methanocaldococcus
Jannaschii
pdb|2X06|E Chain E, Sulfolactate Dehydrogenase From Methanocaldococcus
Jannaschii
pdb|2X06|F Chain F, Sulfolactate Dehydrogenase From Methanocaldococcus
Jannaschii
pdb|2X06|G Chain G, Sulfolactate Dehydrogenase From Methanocaldococcus
Jannaschii
pdb|2X06|H Chain H, Sulfolactate Dehydrogenase From Methanocaldococcus
Jannaschii
Length = 344
Score = 25.8 bits (55), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 10/51 (19%)
Query: 78 ENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSE 128
E C K +F IA +P+ + K+ FKR++D + E++ ++P+E
Sbjct: 256 ERCTKGDLF-IAINPE---------FFXGKEEFKRKVDELLDEIKNSEPAE 296
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.133 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,760,758
Number of Sequences: 62578
Number of extensions: 131142
Number of successful extensions: 337
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 294
Number of HSP's gapped (non-prelim): 37
length of query: 139
length of database: 14,973,337
effective HSP length: 89
effective length of query: 50
effective length of database: 9,403,895
effective search space: 470194750
effective search space used: 470194750
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 46 (22.3 bits)