Query 032504
Match_columns 139
No_of_seqs 122 out of 1033
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 14:56:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032504.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032504hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03216 actin depolymerizing 100.0 2.2E-46 4.8E-51 262.7 16.8 136 4-139 6-141 (141)
2 cd00013 ADF Actin depolymerisa 100.0 1.4E-40 3E-45 230.5 15.7 132 6-138 1-132 (132)
3 KOG1735 Actin depolymerizing f 100.0 1.6E-40 3.5E-45 230.4 11.5 135 5-139 2-141 (146)
4 PF00241 Cofilin_ADF: Cofilin/ 100.0 3.5E-39 7.7E-44 222.2 15.0 127 12-139 1-127 (127)
5 smart00102 ADF Actin depolymer 100.0 3.7E-38 8E-43 217.5 15.4 127 12-139 1-127 (127)
6 PTZ00152 cofilin/actin-depolym 100.0 4.9E-36 1.1E-40 205.1 8.2 114 5-130 2-119 (122)
7 KOG1736 Glia maturation factor 100.0 1.4E-29 3E-34 169.9 12.7 138 1-139 1-141 (143)
8 KOG1747 Protein tyrosine kinas 99.9 2.6E-27 5.6E-32 180.2 9.6 128 1-138 1-135 (342)
9 KOG1747 Protein tyrosine kinas 99.9 7.4E-25 1.6E-29 166.8 12.1 131 6-139 173-311 (342)
10 KOG3655 Drebrins and related a 99.8 2.6E-18 5.7E-23 137.6 12.4 128 7-139 6-134 (484)
11 KOG2313 Stress-induced protein 48.1 32 0.00068 22.7 3.3 33 94-128 66-99 (100)
12 KOG2130 Phosphatidylserine-spe 37.0 32 0.0007 27.7 2.5 38 5-43 191-228 (407)
13 PF10747 DUF2522: Protein of u 36.7 48 0.0011 23.3 3.1 33 40-74 96-129 (142)
14 KOG4037 Photoreceptor synaptic 36.2 1.2E+02 0.0026 22.4 5.1 64 10-73 60-136 (240)
15 KOG0444 Cytoskeletal regulator 35.2 81 0.0018 28.3 4.8 49 64-115 527-575 (1255)
16 PF02680 DUF211: Uncharacteriz 30.8 62 0.0013 21.1 2.7 52 14-66 22-73 (95)
17 COG1888 Uncharacterized protei 29.0 1.5E+02 0.0032 19.4 4.1 53 13-66 23-75 (97)
18 PF03306 AAL_decarboxy: Alpha- 25.7 2.9E+02 0.0062 20.8 5.9 69 13-93 91-159 (220)
19 PF11663 Toxin_YhaV: Toxin wit 25.6 1E+02 0.0022 21.6 3.2 26 66-98 80-106 (140)
20 PF03400 DDE_Tnp_IS1: IS1 tran 25.2 1.8E+02 0.0039 20.0 4.4 42 26-67 19-61 (131)
21 PF13645 YkuD_2: L,D-transpept 25.1 1.1E+02 0.0023 22.3 3.4 29 60-96 44-72 (176)
22 COG1761 RPB11 DNA-directed RNA 25.0 2.1E+02 0.0045 18.8 6.4 56 38-99 14-71 (99)
23 PF11341 DUF3143: Protein of u 24.7 55 0.0012 19.7 1.5 29 86-114 31-60 (63)
24 COG3905 Predicted transcriptio 24.3 72 0.0016 20.3 2.0 24 1-25 1-24 (83)
25 PF06110 DUF953: Eukaryotic pr 24.1 35 0.00076 23.1 0.6 33 52-93 4-40 (119)
26 PRK00453 rpsF 30S ribosomal pr 23.7 1.5E+02 0.0033 19.2 3.7 30 8-37 65-96 (108)
27 COG0432 Uncharacterized conser 23.6 2.3E+02 0.005 19.8 4.6 57 8-66 19-76 (137)
28 PF12663 DUF3788: Protein of u 23.4 1E+02 0.0022 21.2 2.9 28 9-36 91-118 (133)
29 cd01271 Fe65_C Fe65 C-terminal 22.9 2.6E+02 0.0056 19.2 8.3 92 14-112 23-122 (124)
30 PF14234 DUF4336: Domain of un 21.7 1.1E+02 0.0024 24.0 3.1 28 6-33 36-64 (285)
31 PTZ00248 eukaryotic translatio 21.3 4.2E+02 0.009 21.2 6.3 52 21-72 64-115 (319)
32 COG4075 Uncharacterized conser 21.2 1.8E+02 0.004 19.2 3.5 16 7-22 46-61 (110)
33 PF01900 RNase_P_Rpp14: Rpp14/ 20.8 1.7E+02 0.0037 18.7 3.5 36 66-115 1-36 (107)
34 PF14307 Glyco_tran_WbsX: Glyc 20.5 2.1E+02 0.0045 22.7 4.5 69 39-119 123-194 (345)
No 1
>PLN03216 actin depolymerizing factor; Provisional
Probab=100.00 E-value=2.2e-46 Score=262.75 Aligned_cols=136 Identities=60% Similarity=1.110 Sum_probs=128.4
Q ss_pred CccCceeCHHHHHHHHHHHccCCceEEEEEEeCCcceEEEeeecCCCCChHHHhhcCCCCCceEEEEeeeeeeccCCccc
Q 032504 4 AASGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENCQKS 83 (139)
Q Consensus 4 ~~sgi~i~~e~~~a~~~~~~~~~~~~vi~~i~~~~~~i~v~~~~~~~~~~~~~~~~L~~~~pry~~~~~~~~~~~g~~~~ 83 (139)
++|||.++++|.++|++|+.++.+|||+|+|+.++++|+|++++..+.+|+||++.||+++|||++|+|++++++|++++
T Consensus 6 ~~SGi~v~~~c~~~f~~lk~~k~~r~iifkI~~~~~~ivv~~~~~~~~~~~d~~~~L~~~~~rY~vyd~~~~~~~g~~~~ 85 (141)
T PLN03216 6 ATTGMWVTDECKNSFMEMKWKKVHRYIVFKIDEKSRKVTVDKVGGPGESYDDLAASLPTDDCRYAVFDFDFVTVDNCRKS 85 (141)
T ss_pred cCCCCeeCHHHHHHHHHHHhCCCceEEEEEEcCCCCEEEEEecCCCCCCHHHHHHhCCCCCCeEEEEEeEeccCCCCccc
Confidence 36899999999999999998877899999999988899999876555689999999999999999999999999999999
Q ss_pred cEEEEEEcCCCCCchhhHHhHhhHHHHHhhcCCeeEEEEeCCCCCCCHHHHHhhhC
Q 032504 84 RIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRAN 139 (139)
Q Consensus 84 k~vfI~w~P~~a~vk~kmlyss~~~~v~~~l~g~~~~i~a~d~~dl~~~~i~~~l~ 139 (139)
+++||+|||++|++|.||+|||+|++|++.|+|++++|||+|.+||+++.+.++|.
T Consensus 86 klvFI~w~Pd~a~vk~KMlYAssK~~lk~~l~gi~~~iqatd~~el~~~~~~~~~~ 141 (141)
T PLN03216 86 KIFFIAWSPEASRIRAKMLYATSKDGLRRVLDGVHYELQATDPTEMGFDVIRDRAK 141 (141)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEECChHhcCHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999874
No 2
>cd00013 ADF Actin depolymerisation factor/cofilin -like domains; present in a family of essential eukaryotic actin regulatory proteins; these proteins enhance the turnover rate of actin and interact with actin monomers as well as actin filaments.
Probab=100.00 E-value=1.4e-40 Score=230.49 Aligned_cols=132 Identities=52% Similarity=0.938 Sum_probs=124.4
Q ss_pred cCceeCHHHHHHHHHHHccCCceEEEEEEeCCcceEEEeeecCCCCChHHHhhcCCCCCceEEEEeeeeeeccCCccccE
Q 032504 6 SGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRI 85 (139)
Q Consensus 6 sgi~i~~e~~~a~~~~~~~~~~~~vi~~i~~~~~~i~v~~~~~~~~~~~~~~~~L~~~~pry~~~~~~~~~~~g~~~~k~ 85 (139)
||+.++++|.++|++++.+++++|++|+|+.++++|+++.++++..++++|.+.||+++|||++||+++.++ |+.++++
T Consensus 1 sgi~i~~e~~~a~~~~~~~~~~~~vi~~i~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~y~~~~~~~~~~-~~~~~k~ 79 (132)
T cd00013 1 SGIKVSDECKEAFEELKSGKKTRWIIFKIDDDKKEIVVEKTGEGGESFDEFVEELPEDECRYALYDYDFTTE-GSKKSKI 79 (132)
T ss_pred CCceECHHHHHHHHHHHhCCceeEEEEEEcCCCCEEEEEecCCCCCCHHHHHHhCCcCCceEEEEEecccCC-CccccCE
Confidence 599999999999999998867999999999988999999988754589999999999999999999998876 7889999
Q ss_pred EEEEEcCCCCCchhhHHhHhhHHHHHhhcCCeeEEEEeCCCCCCCHHHHHhhh
Q 032504 86 FFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRA 138 (139)
Q Consensus 86 vfI~w~P~~a~vk~kmlyss~~~~v~~~l~g~~~~i~a~d~~dl~~~~i~~~l 138 (139)
+||+|||++||+|.||+|||++.+|++.++|+++++++++.+||+++.|.++|
T Consensus 80 vfI~w~P~~a~~k~km~yas~k~~l~~~l~~~~~~i~a~~~~dl~~~~i~~kl 132 (132)
T cd00013 80 VFIYWSPETAPVKSKMLYASSKAALKRELVGIQVEVQATDPDELDEEALLEKL 132 (132)
T ss_pred EEEEECCCCCChhhhhhhHHHHHHHHHhcCCceEEEEECChhhcCHHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999886
No 3
>KOG1735 consensus Actin depolymerizing factor [Cytoskeleton]
Probab=100.00 E-value=1.6e-40 Score=230.41 Aligned_cols=135 Identities=64% Similarity=1.056 Sum_probs=127.5
Q ss_pred ccCceeCHHHHHHHHHHHccCCceEEEEEEeCCcceEEEeeecCCCCChHHHhhcCC---CCCceEEEEeeeeee-cc-C
Q 032504 5 ASGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLP---AEECRYAVYDYDFVT-AE-N 79 (139)
Q Consensus 5 ~sgi~i~~e~~~a~~~~~~~~~~~~vi~~i~~~~~~i~v~~~~~~~~~~~~~~~~L~---~~~pry~~~~~~~~~-~~-g 79 (139)
+||+.++|+|+..|++++.++.+|+|+|+|+.++.+|++++.|..+++|++|...|| .++|||++||++|.+ .. +
T Consensus 2 aSGv~Vsde~~~~F~elk~kk~~r~ivF~i~~~~~~i~ve~~g~~~~s~~~f~~~l~~~~~~dCrYA~yDf~f~t~~~g~ 81 (146)
T KOG1735|consen 2 ASGVAVSDECKKVFNELKVKKRKRYVVFKISEDKKQIIVEKGGSPGASYDDFVASLPKMPEKDCRYALYDFEFETKESGN 81 (146)
T ss_pred CcceEecHHHHHHHHHHHhhcceeEEEEEeccccccccccccCCCCCchhhhHHHhccCCccccceEEecceEEeecccc
Confidence 589999999999999999988899999999998899999998988899999999999 999999999999998 43 3
Q ss_pred CccccEEEEEEcCCCCCchhhHHhHhhHHHHHhhcCCeeEEEEeCCCCCCCHHHHHhhhC
Q 032504 80 CQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRAN 139 (139)
Q Consensus 80 ~~~~k~vfI~w~P~~a~vk~kmlyss~~~~v~~~l~g~~~~i~a~d~~dl~~~~i~~~l~ 139 (139)
.+++|++||.|||++||+|.||+|||+++.|++.|+|+++++||+|++|++++.|+++|.
T Consensus 82 ~~~~Ki~f~~wsPd~a~vKsKMiYaSSkDalkr~L~Gi~~elQatd~~E~~~~~~~ekl~ 141 (146)
T KOG1735|consen 82 CKKSKIFFIAWSPDTAPVKSKMIYASSKDALKRELTGIQHELQATDPSEMSLDSLAEKLG 141 (146)
T ss_pred ceeeeEEEEEECCCccchhhheeehhhHHHHhhhccCceeeeecCChHHhhHHHHHHHhc
Confidence 478999999999999999999999999999999999999999999999999999999874
No 4
>PF00241 Cofilin_ADF: Cofilin/tropomyosin-type actin-binding protein; InterPro: IPR002108 The actin-depolymerising factor homology (ADF-H) domain is an ~150-amino acid motif that is present in three phylogenetically distinct classes of eukaryotic actin-binding proteins [, , ]: ADF/cofilins, which include ADF, cofilin, destrin, actophorin, coactosin, depactin and glia maturation factors (GMFs) beta and gamma. ADF/cofilins are small actin-binding proteins composed of a single ADF-H domain. They bind both actin-monomers and filaments and promote rapid filament turnover in cells by depolymerising/fragmenting actin filaments. ADF/cofilins bind ADP-actin with higher affinity than ATP-actin and inhibit the spontaneous nucleotide exchange on actin monomers Twinfilins, which are actin monomer-binding proteins that are composed of two ADF-H domains Abp1/Drebrins, which are relatively large proteins composed of an N-terminal ADF-H domain followed by a variable region and a C-terminal SH3 domain. Abp1/Drebrins interact only with actin filaments and do not promote filament depolymerisation or fragmentation Although these proteins are biochemically distinct and play different roles in actin dynamics, they all appear to use the ADF-H domain for their interactions with actin. The ADF-H domain consists of a six-stranded mixed beta-sheet in which the four central strands (beta2-beta5) are anti-parallel and the two edge strands (beta1 and beta6) run parallel with the neighbouring strands. The sheet is surrounded by two alpha-helices on each side [, , ].; GO: 0003779 actin binding, 0005622 intracellular; PDB: 1AK6_A 1AK7_A 1V6F_A 2L72_A 1CFY_A 1QPV_A 1COF_A 1TVJ_A 1X67_A 3L50_A ....
Probab=100.00 E-value=3.5e-39 Score=222.19 Aligned_cols=127 Identities=37% Similarity=0.812 Sum_probs=118.4
Q ss_pred HHHHHHHHHHHccCCceEEEEEEeCCcceEEEeeecCCCCChHHHhhcCCCCCceEEEEeeeeeeccCCccccEEEEEEc
Q 032504 12 DDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWS 91 (139)
Q Consensus 12 ~e~~~a~~~~~~~~~~~~vi~~i~~~~~~i~v~~~~~~~~~~~~~~~~L~~~~pry~~~~~~~~~~~g~~~~k~vfI~w~ 91 (139)
|+|+++|++++.+++++|++|+|++++++|+++++|....+|++|.+.||+++|||++|++.++++ |+.+++++||+||
T Consensus 1 ~e~~~~~~~~~~~~~~~~i~~~i~~~~~~i~v~~~g~~~~~~~el~~~l~~~~p~y~~~~~~~~~~-~~~~~k~vfI~w~ 79 (127)
T PF00241_consen 1 DECKAAFQELKSKKSTRWIIFKIDDEKEEIVVEKSGSEGGSFDELLSHLPDDEPRYILYRFEYTHK-GSRRSKLVFIYWC 79 (127)
T ss_dssp HHHHHHHHHHHTTTSCSEEEEEEETTSTEEEEEEEEEESSHHHHHHHCSCTTSEEEEEEEEEEEET-TSEEEEEEEEEEE
T ss_pred CHHHHHHHHHHcCCCceEEEEEEeCCCcEEEEEeccCCCCCHHHHHHhcccCCcEEEEEEeeeccc-CCCCceEEEEEEe
Confidence 689999999999877999999999988899999988444689999999999999999999999877 6789999999999
Q ss_pred CCCCCchhhHHhHhhHHHHHhhcCCeeEEEEeCCCCCCCHHHHHhhhC
Q 032504 92 PDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRAN 139 (139)
Q Consensus 92 P~~a~vk~kmlyss~~~~v~~~l~g~~~~i~a~d~~dl~~~~i~~~l~ 139 (139)
|++||+|+||+|||++.+|++.+++++++++++|++||+++.|.++|+
T Consensus 80 P~~~~vk~km~yas~k~~l~~~l~~~~~~~~~~d~~dl~~~~i~~kl~ 127 (127)
T PF00241_consen 80 PDNAPVKEKMLYASSKASLKKKLGGIHIEIQASDPDDLSEEEILEKLK 127 (127)
T ss_dssp STTS-HHHHHHHHHHHHHHHHHCTTEEEEEEESSGGGGSHHHHHHHH-
T ss_pred cCCccHHHhhhhHHhHHHHHHHhCCceEEEEECChHHCCHHHHHHhhC
Confidence 999999999999999999999999999999999999999999999984
No 5
>smart00102 ADF Actin depolymerisation factor/cofilin -like domains. Severs actin filaments and binds to actin monomers.
Probab=100.00 E-value=3.7e-38 Score=217.51 Aligned_cols=127 Identities=50% Similarity=0.911 Sum_probs=118.4
Q ss_pred HHHHHHHHHHHccCCceEEEEEEeCCcceEEEeeecCCCCChHHHhhcCCCCCceEEEEeeeeeeccCCccccEEEEEEc
Q 032504 12 DDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWS 91 (139)
Q Consensus 12 ~e~~~a~~~~~~~~~~~~vi~~i~~~~~~i~v~~~~~~~~~~~~~~~~L~~~~pry~~~~~~~~~~~g~~~~k~vfI~w~ 91 (139)
++|.++|++++.+++.+|++|+|+.++++|+++.+|....+|++|++.||+++|||++|+++++++ |+.+++++||+||
T Consensus 1 ~~~~~~~~~~~~~~~~~~vi~~i~~~~~~i~v~~~~~~~~~~~el~~~l~~~~~ry~~~~~~~~~~-~~~~~k~vfI~w~ 79 (127)
T smart00102 1 EDCKEAFNELKKKRKHSAIIFKIDKDNEEIVVEEVGSTEDSYDEFVEELPEDECRYALYDYKFTTE-ESKKSKIVFIFWS 79 (127)
T ss_pred ChHHHHHHHHHcCCCceEEEEEEecCCCEEEEEecCCCCCCHHHHHHhCCccCceEEEEEeecccC-CCccccEEEEEEC
Confidence 479999999998877999999999988999999987555689999999999999999999998876 4678999999999
Q ss_pred CCCCCchhhHHhHhhHHHHHhhcCCeeEEEEeCCCCCCCHHHHHhhhC
Q 032504 92 PDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRAN 139 (139)
Q Consensus 92 P~~a~vk~kmlyss~~~~v~~~l~g~~~~i~a~d~~dl~~~~i~~~l~ 139 (139)
|++||+|.||+|||++.+|++.++|+++++++++.+||+++.|.++|+
T Consensus 80 P~~a~~~~km~yas~k~~l~~~l~~~~~~i~~~~~~el~~~~i~~kl~ 127 (127)
T smart00102 80 PDGAPVKSKMLYASSKDTLKKELGGIQVEVQATDEDDLDEEALKEKLK 127 (127)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCceEEEEECChhhcCHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999985
No 6
>PTZ00152 cofilin/actin-depolymerizing factor 1-like protein; Provisional
Probab=100.00 E-value=4.9e-36 Score=205.11 Aligned_cols=114 Identities=28% Similarity=0.620 Sum_probs=101.6
Q ss_pred ccCceeCHHHHHHHHHHHccCCceEEEEEEeCCcceEEEeeecCCCCChHHHhhcCCCCC---ceEEEEeeeeeeccCCc
Q 032504 5 ASGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEE---CRYAVYDYDFVTAENCQ 81 (139)
Q Consensus 5 ~sgi~i~~e~~~a~~~~~~~~~~~~vi~~i~~~~~~i~v~~~~~~~~~~~~~~~~L~~~~---pry~~~~~~~~~~~g~~ 81 (139)
+|||.++++|.++|++++.++..|||+|+|++ ++|+|++.++. .+|++|++.||+++ |||++|+++
T Consensus 2 ~SGi~v~de~~~~f~~lk~~k~~r~iifkI~~--~~Ivv~~~~~~-~~~~e~~~~L~~~~~~~crY~vyd~~-------- 70 (122)
T PTZ00152 2 ISGIRVNDNCVTEFNNMKIRKTCRWIIFVIEN--CEIIIHSKGAT-TTLTELVGSIDKNDKIQCAYVVFDAV-------- 70 (122)
T ss_pred CCCcCcCHHHHHHHHHHhcCCcceEEEEEEcC--cEEEEEecCCC-CCHHHHHHhccccCCCCceEEEEccC--------
Confidence 47999999999999999988779999999975 78999988875 58999999999998 999999873
Q ss_pred cccEEEEEEcCCCCCchhhHHhHhhHHHHHhhcCCeeE-EEEeCCCCCCC
Q 032504 82 KSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQV-ELQATDPSEMG 130 (139)
Q Consensus 82 ~~k~vfI~w~P~~a~vk~kmlyss~~~~v~~~l~g~~~-~i~a~d~~dl~ 130 (139)
++++||+|||++|++|.||+|||+|.+|++.+.|++. ..++++.+||.
T Consensus 71 -~klvFI~w~Pd~a~ik~KMlYASsK~~l~~~l~Gi~~~~~~~~~~~~~~ 119 (122)
T PTZ00152 71 -NKIHFFMYARESSNSRDRMTYASSKQALLKKIEGVNVLTSVIESAQDVA 119 (122)
T ss_pred -CCEEEEEECCCCCChHHhhhhHhHHHHHHHHhcchhHHHHHHHHhhhhh
Confidence 4799999999999999999999999999999999876 55666666653
No 7
>KOG1736 consensus Glia maturation factor beta [Extracellular structures]
Probab=99.97 E-value=1.4e-29 Score=169.86 Aligned_cols=138 Identities=17% Similarity=0.378 Sum_probs=122.4
Q ss_pred CCCCccCceeCHHHHHHHHHHHcc-C--CceEEEEEEeCCcceEEEeeecCCCCChHHHhhcCCCCCceEEEEeeeeeec
Q 032504 1 MANAASGMAVHDDCKLKFLELKAK-R--TYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTA 77 (139)
Q Consensus 1 m~~~~sgi~i~~e~~~a~~~~~~~-~--~~~~vi~~i~~~~~~i~v~~~~~~~~~~~~~~~~L~~~~pry~~~~~~~~~~ 77 (139)
||++..-.+|+++..+.+++||.. + ...+++++|++++..|++++.--...+.+++.+.||+++|||++|.|++++.
T Consensus 1 MS~~~~~~~i~~et~~ki~kFR~r~k~t~~~A~imKidK~~~eiV~d~Eeld~is~eEladeLpe~~PRFvl~sYpt~t~ 80 (143)
T KOG1736|consen 1 MSNSLVVCKIGTETREKIRKFRFRTKETSNAAIIMKIDKDSYEIVLDEEELDEISPEELADELPERQPRFVLYSYPTTTD 80 (143)
T ss_pred CCcceeEEEeCHHHHHHHHHhhhhhccccceeEEEEecCCceEeecCHHHhccCChHHHHhhccccCCcEEEEECccccc
Confidence 665444477999999999999875 3 4789999999999999998543334678899999999999999999999999
Q ss_pred cCCccccEEEEEEcCCCCCchhhHHhHhhHHHHHhhcCCeeEEEEeCCCCCCCHHHHHhhhC
Q 032504 78 ENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRAN 139 (139)
Q Consensus 78 ~g~~~~k~vfI~w~P~~a~vk~kmlyss~~~~v~~~l~g~~~~i~a~d~~dl~~~~i~~~l~ 139 (139)
||+...+++||||.|.+|+..++|+||+++.-+.+.. +++.-+++++-+|++.+++.++|+
T Consensus 81 DGr~stPL~~Iyw~P~~~~~e~~MmYAgak~~~~~~~-~~~KvfEir~tdD~t~e~l~E~L~ 141 (143)
T KOG1736|consen 81 DGRVSTPLCFIYWSPVGCKPEQQMMYAGAKNMLVQTA-ELTKVFEIRSTDDLTEEWLREKLE 141 (143)
T ss_pred CCcccccEEEEEecCccCCHHHHHHHHHHHHHHHHHh-hheEEEEecccccccHHHHHHHhh
Confidence 9999999999999999999999999999999999998 555578999999999999999986
No 8
>KOG1747 consensus Protein tyrosine kinase 9/actin monomer-binding protein [Extracellular structures]
Probab=99.94 E-value=2.6e-27 Score=180.23 Aligned_cols=128 Identities=31% Similarity=0.479 Sum_probs=110.7
Q ss_pred CCCCccCceeCHHHHHHHHHHHccCCceEEEEEEeCCcceEEEeeecC----CCCChHHHhhcC-CCCCceEEEEeeeee
Q 032504 1 MANAASGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGE----PTQTYEDFAASL-PAEECRYAVYDYDFV 75 (139)
Q Consensus 1 m~~~~sgi~i~~e~~~a~~~~~~~~~~~~vi~~i~~~~~~i~v~~~~~----~~~~~~~~~~~L-~~~~pry~~~~~~~~ 75 (139)
||+ |+||.-++++...|++-+.++ +|.+.+.|++ +++.+..+.. +..+|+.++..| ...+|||++|+.+.
T Consensus 1 MS~-QtGI~A~e~l~~~l~~~~~~k-~R~ikIvI~n--Eql~~~s~~e~~~~w~~D~~~~v~~ll~~~ePcyILyrlds- 75 (342)
T KOG1747|consen 1 MSH-QTGIRATEALKKFLNEAKNGK-LRLIKIVIEN--EQLSPGSTSEPSTSWERDYDKLVLPLLDAREPCYILYRLDS- 75 (342)
T ss_pred CCc-ccccchHHHHHHHHHhcccCc-eEEEEEEEec--ccccCCccccccccHHHHHHHHHHHhhccCCceEEEEeecC-
Confidence 896 999999999999999999987 9999988887 6787765543 345788888764 56799999999873
Q ss_pred eccCCccccEEEEEEcCCCCCchhhHHhHhhHHHHHhhcCCeeE--EEEeCCCCCCCHHHHHhhh
Q 032504 76 TAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQV--ELQATDPSEMGLDVFKDRA 138 (139)
Q Consensus 76 ~~~g~~~~k~vfI~w~P~~a~vk~kmlyss~~~~v~~~l~g~~~--~i~a~d~~dl~~~~i~~~l 138 (139)
+..+|+||.|+||+||||+|||||||+++|++.+++.++ ++++++++||+...+.+.|
T Consensus 76 -----~~~~w~lIs~vPD~apVR~KMLYAsTrATlkrefG~~~i~ee~~~T~~~dl~~~~~~k~l 135 (342)
T KOG1747|consen 76 -----KNAEWLLISWVPDNAPVRQKMLYASTRATLKREFGGAYITEELFATDLEDLTLLGYFKSL 135 (342)
T ss_pred -----CCccEEEEEECCCCChHHHHHHHHHHHHHHHHHhccceeccccccCCHHHhhhHHHHHhh
Confidence 345999999999999999999999999999999998887 9999999999998877654
No 9
>KOG1747 consensus Protein tyrosine kinase 9/actin monomer-binding protein [Extracellular structures]
Probab=99.92 E-value=7.4e-25 Score=166.85 Aligned_cols=131 Identities=18% Similarity=0.391 Sum_probs=115.5
Q ss_pred cCce--eCHHHHHHHHHHHccCCceEEEEEEeCCcceEEEeeecCCCCChHHHhhcCCCCCceEEEEeeeeeeccCCccc
Q 032504 6 SGMA--VHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENCQKS 83 (139)
Q Consensus 6 sgi~--i~~e~~~a~~~~~~~~~~~~vi~~i~~~~~~i~v~~~~~~~~~~~~~~~~L~~~~pry~~~~~~~~~~~g~~~~ 83 (139)
+|+. ++++...|+++++.++ ++||+|.||..+|.|.+..+... ...+||...+|.+.|||.+|.|.+++. |.-.+
T Consensus 173 ~Gva~pi~~~a~kAl~~L~~~~-~n~vql~ID~~nE~I~l~~t~~~-~e~sdL~s~vP~d~prY~ff~~~ht~e-GD~~e 249 (342)
T KOG1747|consen 173 QGVAFPIDRNAEKALQDLKSSK-LNYVQLSIDLENETIQLSQTDTC-TEPSDLPSRVPRDGPRYHFFLFKHTHE-GDPLE 249 (342)
T ss_pred cceeecccHHHHHHHHHHHhhc-cceEEEEeccccceeeeeccCCC-CChHHhhhhcCCCCCceEEEecccccC-CCCce
Confidence 4666 7999999999999988 99999999988899999887653 479999999999999999999999875 45578
Q ss_pred cEEEEEEcCC-CCCchhhHHhHhhHHHHHhhcC---CeeE--EEEeCCCCCCCHHHHHhhhC
Q 032504 84 RIFFIAWSPD-TARVRSKMIYASSKDRFKRELD---GIQV--ELQATDPSEMGLDVFKDRAN 139 (139)
Q Consensus 84 k~vfI~w~P~-~a~vk~kmlyss~~~~v~~~l~---g~~~--~i~a~d~~dl~~~~i~~~l~ 139 (139)
.++|||.||. +|+||+||+|||||..|...+. |+-+ .|+++|.+||+++.+.+.+|
T Consensus 250 s~~FIYS~P~~~~sVKeRMlYSScK~~fLd~~k~~~gi~i~kKiEi~d~~eLte~~L~e~~H 311 (342)
T KOG1747|consen 250 SIVFIYSMPGYGCSVKERMLYSSCKSGFLDSLKNDLGIVISKKIEIDDGAELTEKFLYEELH 311 (342)
T ss_pred eEEEEEECCCCCcchhhhhHhhhcchhHHHHHHHhcCeeEEEEEeeCcHHHhhHHHHHHhhC
Confidence 9999999999 9999999999999988866653 5555 99999999999999988876
No 10
>KOG3655 consensus Drebrins and related actin binding proteins [Cytoskeleton]
Probab=99.78 E-value=2.6e-18 Score=137.63 Aligned_cols=128 Identities=16% Similarity=0.281 Sum_probs=113.0
Q ss_pred CceeCHHHHHHHHHHHccC-CceEEEEEEeCCcceEEEeeecCCCCChHHHhhcCCCCCceEEEEeeeeeeccCCccccE
Q 032504 7 GMAVHDDCKLKFLELKAKR-TYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRI 85 (139)
Q Consensus 7 gi~i~~e~~~a~~~~~~~~-~~~~vi~~i~~~~~~i~v~~~~~~~~~~~~~~~~L~~~~pry~~~~~~~~~~~g~~~~k~ 85 (139)
+-.-..+|.++|++++.+. .+.|++|++++.+..+.+..++. ..+++|++.+....-.|+++++. +.++.+.|+
T Consensus 6 ~~~~~aei~aaY~~v~~d~~dt~WaiF~Yeg~s~~~~~~~s~~--~~~~e~~~df~~~kv~yg~~rv~---D~~s~l~Kf 80 (484)
T KOG3655|consen 6 TTTHGAEIRAAYERVVDDSSDTDWALFTYEGNSNDLKVAGSGE--GGLEEFLGDFDSGKVMYGFCRVK---DPMSGLPKF 80 (484)
T ss_pred ccccHHHHHHHHHHhhccCCCceeEEEeecCCccceeeecccc--ccHHHHhhhcccCceeEEEEEec---CcccCCcce
Confidence 3344678999999998876 68999999998666665555554 48999999999999999999986 446779999
Q ss_pred EEEEEcCCCCCchhhHHhHhhHHHHHhhcCCeeEEEEeCCCCCCCHHHHHhhhC
Q 032504 86 FFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRAN 139 (139)
Q Consensus 86 vfI~w~P~~a~vk~kmlyss~~~~v~~~l~g~~~~i~a~d~~dl~~~~i~~~l~ 139 (139)
|||+||++++++-.|-.+|+.++.+++.|.|++++|+|++.+||+.+.|.++|+
T Consensus 81 vLI~W~GE~vp~~Rka~~ath~a~v~~~lkg~hV~i~Ar~e~Dld~d~i~~~ls 134 (484)
T KOG3655|consen 81 VLINWIGEGVPVLRKAKCATHKALVKNFLKGFHVEINARSEEDLDEDAIREKLS 134 (484)
T ss_pred EEEEecCCccHHHhhhhhcchHHHHHHHhhcceEEEeccchhhcCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999874
No 11
>KOG2313 consensus Stress-induced protein UVI31+ [Signal transduction mechanisms]
Probab=48.12 E-value=32 Score=22.65 Aligned_cols=33 Identities=24% Similarity=0.524 Sum_probs=21.9
Q ss_pred CCCchhhHHhHhhHHHHHhhcCCeeE-EEEeCCCCC
Q 032504 94 TARVRSKMIYASSKDRFKRELDGIQV-ELQATDPSE 128 (139)
Q Consensus 94 ~a~vk~kmlyss~~~~v~~~l~g~~~-~i~a~d~~d 128 (139)
+..-|.||+|..-++.+.+. |+|. .|.+..|++
T Consensus 66 s~v~RHRlVy~~L~eEl~~~--gvHAL~i~aKTP~e 99 (100)
T KOG2313|consen 66 SLVKRHRLVYKALKEELAGT--GVHALSIMAKTPSE 99 (100)
T ss_pred cHHHHHHHHHHHHHHHhhcc--ceeEEEeeccCCCC
Confidence 56779999995444444322 5665 888877765
No 12
>KOG2130 consensus Phosphatidylserine-specific receptor PtdSerR, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=37.05 E-value=32 Score=27.65 Aligned_cols=38 Identities=13% Similarity=0.157 Sum_probs=29.6
Q ss_pred ccCceeCHHHHHHHHHHHccCCceEEEEEEeCCcceEEE
Q 032504 5 ASGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIV 43 (139)
Q Consensus 5 ~sgi~i~~e~~~a~~~~~~~~~~~~vi~~i~~~~~~i~v 43 (139)
-+||.|+|..-.|++.|..|+ .||++|--..-.+-|.+
T Consensus 191 GtsiHIDPlgTSAWNtll~Gh-KrW~LfPp~~p~~lvkv 228 (407)
T KOG2130|consen 191 GTSIHIDPLGTSAWNTLLQGH-KRWVLFPPGTPPELVKV 228 (407)
T ss_pred CceeEECCcchHHHHHHhhcc-ceeEEcCCCCCCCceee
Confidence 457889999999999999988 79999976543344443
No 13
>PF10747 DUF2522: Protein of unknown function (DUF2522); InterPro: IPR019683 This entry represents the Sporulation inhibitor of replication (sirA) family of proteins from Bacillus sp. Induction of sporulation in rapidly growing cells inhibits replication; this is thought to be through the action of SirA protein and independent of phosphorylated Spo0A; however SirA protein synthesis is induced by Spo0A [].
Probab=36.68 E-value=48 Score=23.26 Aligned_cols=33 Identities=18% Similarity=0.216 Sum_probs=23.8
Q ss_pred eEEEeeecCCCCChH-HHhhcCCCCCceEEEEeeee
Q 032504 40 QVIVEKLGEPTQTYE-DFAASLPAEECRYAVYDYDF 74 (139)
Q Consensus 40 ~i~v~~~~~~~~~~~-~~~~~L~~~~pry~~~~~~~ 74 (139)
.|.+..+|+. +.+ .|-+.|..-+|||...+++.
T Consensus 96 ~i~l~~~Gs~--~aet~~FevLrk~~~~FlAvd~~~ 129 (142)
T PF10747_consen 96 RIQLNCSGSY--DAETDFFEVLRKISPCFLAVDFEN 129 (142)
T ss_pred EEEEEecCCH--HHHHHHHHHHHhCCCceEEEecCC
Confidence 4555555553 344 68888999999999999873
No 14
>KOG4037 consensus Photoreceptor synaptic vesicle protein HRG4/UNC-119 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=36.16 E-value=1.2e+02 Score=22.35 Aligned_cols=64 Identities=20% Similarity=0.323 Sum_probs=36.8
Q ss_pred eCHHHHHHHHHHHccC---------CceEEEEEEe-CCcceEEEeeecCCC---CChHHHhhcCCCCCceEEEEeee
Q 032504 10 VHDDCKLKFLELKAKR---------TYRFIVFKIE-EKQKQVIVEKLGEPT---QTYEDFAASLPAEECRYAVYDYD 73 (139)
Q Consensus 10 i~~e~~~a~~~~~~~~---------~~~~vi~~i~-~~~~~i~v~~~~~~~---~~~~~~~~~L~~~~pry~~~~~~ 73 (139)
|+++-.-.++.+-.+- ++.+..|+|- -+++.|..+-..+.. +.+.--.+.|..+..||+=|.|.
T Consensus 60 itP~dVL~L~~IT~dyLCSp~aNvy~IdFtrFkIRDldsg~VLFEIaKPp~eteE~l~a~ae~lspnagRyVRYqFt 136 (240)
T KOG4037|consen 60 ITPEDVLGLQRITGDYLCSPEANVYKIDFTRFKIRDLDSGTVLFEIAKPPVETEERLPANAEDLSPNAGRYVRYQFT 136 (240)
T ss_pred CChHHhhccccccCCceeCcccceEEeeeEEEEEeeccCCcEEEEecCCCCcchhhcchhhhccCCcccceEEEeec
Confidence 4555555555554331 3567788884 355555544332221 23333455688899999998874
No 15
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=35.19 E-value=81 Score=28.34 Aligned_cols=49 Identities=14% Similarity=0.106 Sum_probs=37.7
Q ss_pred CceEEEEeeeeeeccCCccccEEEEEEcCCCCCchhhHHhHhhHHHHHhhcC
Q 032504 64 ECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELD 115 (139)
Q Consensus 64 ~pry~~~~~~~~~~~g~~~~k~vfI~w~P~~a~vk~kmlyss~~~~v~~~l~ 115 (139)
.-||+|..-... +.| .-.|-..||+++.|..-.+|.-|-+.-.+++.|+
T Consensus 527 aDcYiVLKT~~d-dsG--~L~weIfyWiG~eAtLDK~aCsAiHAVnLRN~Lg 575 (1255)
T KOG0444|consen 527 ADCYIVLKTTRD-DSG--QLRWEIFYWIGEEATLDKGACSAIHAVNLRNHLG 575 (1255)
T ss_pred ccEEEEEEeecc-ccc--ccceeEEEEecccccccchhhhHHHhhhhhhhhC
Confidence 458999876432 234 3467778999999999999998888888888774
No 16
>PF02680 DUF211: Uncharacterized ArCR, COG1888; InterPro: IPR003831 This entry describes proteins of unknown function.; PDB: 3BPD_I 2RAQ_F 2X3D_E.
Probab=30.85 E-value=62 Score=21.14 Aligned_cols=52 Identities=8% Similarity=0.158 Sum_probs=34.2
Q ss_pred HHHHHHHHHccCCceEEEEEEeCCcceEEEeeecCCCCChHHHhhcCCCCCce
Q 032504 14 CKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECR 66 (139)
Q Consensus 14 ~~~a~~~~~~~~~~~~vi~~i~~~~~~i~v~~~~~~~~~~~~~~~~L~~~~pr 66 (139)
+..++.++..-.+++..+..++.+.+.+.+.-.|.. .+|+++.+.+.+-.+.
T Consensus 22 ~A~~l~~~~gV~gVnitv~EvD~ete~lkitiEG~~-id~d~i~~~Ie~~Gg~ 73 (95)
T PF02680_consen 22 LAKALSELEGVDGVNITVVEVDVETENLKITIEGDD-IDFDEIKEAIEELGGV 73 (95)
T ss_dssp HHHHHHTSTTEEEEEEEEEEE-SSEEEEEEEEEESS-E-HHHHHHHHHHTT-E
T ss_pred HHHHHHhCCCcceEEEEEEEeeccccEEEEEEEeCC-CCHHHHHHHHHHcCCe
Confidence 344444444433578888889998888888877775 5899998887655543
No 17
>COG1888 Uncharacterized protein conserved in archaea [Function unknown]
Probab=28.96 E-value=1.5e+02 Score=19.36 Aligned_cols=53 Identities=11% Similarity=0.199 Sum_probs=37.7
Q ss_pred HHHHHHHHHHccCCceEEEEEEeCCcceEEEeeecCCCCChHHHhhcCCCCCce
Q 032504 13 DCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECR 66 (139)
Q Consensus 13 e~~~a~~~~~~~~~~~~vi~~i~~~~~~i~v~~~~~~~~~~~~~~~~L~~~~pr 66 (139)
++...+.++..=++++-.+..|+.+.+.+.+.-.|.. -+|+++.+.+.+-.+.
T Consensus 23 e~A~~lskl~gVegVNItv~eiD~et~~~~itIeG~~-ldydei~~~iE~~Gg~ 75 (97)
T COG1888 23 ELALELSKLEGVEGVNITVTEIDVETENLKITIEGTN-LDYDEIEEVIEELGGA 75 (97)
T ss_pred HHHHHHhhcCCcceEEEEEEEeeehhcceEEEEEcCC-CCHHHHHHHHHHcCCe
Confidence 4455555555444688889999988887877777765 5899998887765554
No 18
>PF03306 AAL_decarboxy: Alpha-acetolactate decarboxylase; InterPro: IPR005128 Alpha-acetolactate decarboxylase plays a dual role in the cell: (i) it catalyzes the second step of the acetoin pathway, (S)-2-hydroxy-2-methyl-3-oxobutanoate = (R)-2-acetoin + CO2 and thus potentially the internal pH of cells and (ii) it controls the pool of alpha-acetolactate during leucine and valine synthesis.; GO: 0047605 acetolactate decarboxylase activity, 0019751 polyol metabolic process, 0005789 endoplasmic reticulum membrane; PDB: 1XV2_B.
Probab=25.66 E-value=2.9e+02 Score=20.76 Aligned_cols=69 Identities=14% Similarity=0.244 Sum_probs=34.4
Q ss_pred HHHHHHHHHHccCCceEEEEEEeCCcceEEEeeecCCCCChHHHhhcCCCCCceEEEEeeeeeeccCCccccEEEEEEcC
Q 032504 13 DCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSP 92 (139)
Q Consensus 13 e~~~a~~~~~~~~~~~~vi~~i~~~~~~i~v~~~~~~~~~~~~~~~~L~~~~pry~~~~~~~~~~~g~~~~k~vfI~w~P 92 (139)
++.+.+.+.-..+ ..+..++|+..-+.|.+-..-....+|.-|.+.+.. ++.|-+-+.+ -.+.=+|+|
T Consensus 91 ~l~~~l~~~~~~~-N~f~airi~G~F~~v~~Rsv~~qe~Py~~l~e~~~~-Q~~f~~~ni~----------GTlVGf~sP 158 (220)
T PF03306_consen 91 ELEAKLDELLPSK-NLFYAIRIDGTFSSVKTRSVPKQEKPYPPLAEVAKN-QPEFTFENIE----------GTLVGFYSP 158 (220)
T ss_dssp HHHHHHHHHSS-T-TS-EEEEEEEEEEEEEEE------SS---THHHHTT---EEEEEEEE----------EEEEEEEE-
T ss_pred HHHHHHHHhcCCC-ceEEEEEEEEEECeEEEEeccCccCCCCChhHHhcc-CceEEecCcE----------EEEEEEEcc
Confidence 4555555554444 567788888766677655433222356666665544 7777665553 236679999
Q ss_pred C
Q 032504 93 D 93 (139)
Q Consensus 93 ~ 93 (139)
+
T Consensus 159 ~ 159 (220)
T PF03306_consen 159 E 159 (220)
T ss_dssp G
T ss_pred h
Confidence 7
No 19
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=25.58 E-value=1e+02 Score=21.60 Aligned_cols=26 Identities=38% Similarity=0.830 Sum_probs=19.1
Q ss_pred eE-EEEeeeeeeccCCccccEEEEEEcCCCCCch
Q 032504 66 RY-AVYDYDFVTAENCQKSRIFFIAWSPDTARVR 98 (139)
Q Consensus 66 ry-~~~~~~~~~~~g~~~~k~vfI~w~P~~a~vk 98 (139)
|| .+|+|+ ..+|+|++.|+-|....|
T Consensus 80 ryRLFFRy~-------s~skiIv~aWvNDe~tlR 106 (140)
T PF11663_consen 80 RYRLFFRYD-------SESKIIVYAWVNDEQTLR 106 (140)
T ss_pred eeeEEEEec-------CccCEEEEEEeCCCcchh
Confidence 55 455664 246999999999987766
No 20
>PF03400 DDE_Tnp_IS1: IS1 transposase; InterPro: IPR005063 Transposase proteins are necessary for efficient DNA transposition. This family represents bacterial IS1 transposases []. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated
Probab=25.23 E-value=1.8e+02 Score=19.96 Aligned_cols=42 Identities=19% Similarity=0.366 Sum_probs=31.6
Q ss_pred CceEEEEEEeCCcceEEEeeecCCC-CChHHHhhcCCCCCceE
Q 032504 26 TYRFIVFKIEEKQKQVIVEKLGEPT-QTYEDFAASLPAEECRY 67 (139)
Q Consensus 26 ~~~~vi~~i~~~~~~i~v~~~~~~~-~~~~~~~~~L~~~~pry 67 (139)
...|+.+.++.+...|.--..|+++ .++..|.+.|+.-++.+
T Consensus 19 n~~Wiw~A~dr~t~~Iva~v~G~Rs~~T~~~L~~~L~~~~i~~ 61 (131)
T PF03400_consen 19 NKRWIWYAIDRKTGGIVAFVFGDRSDKTFRKLWALLKPFNIGF 61 (131)
T ss_pred CceEEEEEEeccCCcceeEEEecchhhHHHHHhhhhccccceE
Confidence 5789999999888888766666653 57888888887665554
No 21
>PF13645 YkuD_2: L,D-transpeptidase catalytic domain
Probab=25.14 E-value=1.1e+02 Score=22.33 Aligned_cols=29 Identities=21% Similarity=0.373 Sum_probs=23.1
Q ss_pred CCCCCceEEEEeeeeeeccCCccccEEEEEEcCCCCC
Q 032504 60 LPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTAR 96 (139)
Q Consensus 60 L~~~~pry~~~~~~~~~~~g~~~~k~vfI~w~P~~a~ 96 (139)
+|..++||.|+|+. ..++++=+||-.+..
T Consensus 44 ~pS~~~R~~v~Dl~--------~~~~l~~~~VaHG~g 72 (176)
T PF13645_consen 44 KPSGEKRFFVIDLK--------KGKLLYNTLVAHGRG 72 (176)
T ss_pred CCCCCCeEEEEECC--------CCEEEEeeeeecccC
Confidence 68889999999985 347777789887654
No 22
>COG1761 RPB11 DNA-directed RNA polymerase, subunit L [Transcription]
Probab=24.99 E-value=2.1e+02 Score=18.79 Aligned_cols=56 Identities=16% Similarity=0.207 Sum_probs=37.4
Q ss_pred cceEEEeeecCCCCChHHH-hhc-CCCCCceEEEEeeeeeeccCCccccEEEEEEcCCCCCchh
Q 032504 38 QKQVIVEKLGEPTQTYEDF-AAS-LPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRS 99 (139)
Q Consensus 38 ~~~i~v~~~~~~~~~~~~~-~~~-L~~~~pry~~~~~~~~~~~g~~~~k~vfI~w~P~~a~vk~ 99 (139)
.+.+++.-.|++. ++--+ .+. +.+..+-|+-|+.+++..+ ...+-|..+++ +.+++
T Consensus 14 ~n~~~i~i~gEdH-TL~NlL~~~L~~d~~V~~a~Y~i~HP~~~----~~~i~Ikt~~~-~dp~~ 71 (99)
T COG1761 14 DNSLELEIEGEDH-TLGNLLREELLKDEDVEFAAYSIPHPLID----NPKIRIKTKGG-VDPKE 71 (99)
T ss_pred CCEEEEEEecCCc-hHHHHHHHHHhCCCCeeEEEEeCCCCCCC----CceEEEEECCC-CCHHH
Confidence 3567776666653 55544 444 4567899999999887543 56778888887 55443
No 23
>PF11341 DUF3143: Protein of unknown function (DUF3143); InterPro: IPR021489 This family of proteins has no known function.
Probab=24.67 E-value=55 Score=19.72 Aligned_cols=29 Identities=7% Similarity=0.305 Sum_probs=24.9
Q ss_pred EEEEEcCCC-CCchhhHHhHhhHHHHHhhc
Q 032504 86 FFIAWSPDT-ARVRSKMIYASSKDRFKREL 114 (139)
Q Consensus 86 vfI~w~P~~-a~vk~kmlyss~~~~v~~~l 114 (139)
+.|.|.+.+ ..++...-||-+|+.|.+++
T Consensus 31 L~V~y~~~g~~~~~rsF~YsLSR~DvE~Ai 60 (63)
T PF11341_consen 31 LVVRYLQSGPQDIQRSFPYSLSREDVEAAI 60 (63)
T ss_pred EEEEEccCCCcccEEeccCcCCHHHHHHHH
Confidence 678899888 88888899999999998765
No 24
>COG3905 Predicted transcriptional regulator [Transcription]
Probab=24.27 E-value=72 Score=20.31 Aligned_cols=24 Identities=25% Similarity=0.292 Sum_probs=18.2
Q ss_pred CCCCccCceeCHHHHHHHHHHHccC
Q 032504 1 MANAASGMAVHDDCKLKFLELKAKR 25 (139)
Q Consensus 1 m~~~~sgi~i~~e~~~a~~~~~~~~ 25 (139)
|++ +-.|.++|++...+..+-...
T Consensus 1 ~~t-a~tirl~del~~rLd~lAe~~ 24 (83)
T COG3905 1 MMT-AFTIRLDDELKRRLDELAEAT 24 (83)
T ss_pred CCc-ceEEecCHHHHHHHHHHHHHh
Confidence 454 335999999999999997643
No 25
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=24.05 E-value=35 Score=23.12 Aligned_cols=33 Identities=15% Similarity=0.418 Sum_probs=16.9
Q ss_pred ChHHHhhcC---C-CCCceEEEEeeeeeeccCCccccEEEEEEcCC
Q 032504 52 TYEDFAASL---P-AEECRYAVYDYDFVTAENCQKSRIFFIAWSPD 93 (139)
Q Consensus 52 ~~~~~~~~L---~-~~~pry~~~~~~~~~~~g~~~~k~vfI~w~P~ 93 (139)
+|++|.+.+ . .+++.|++|--..- ..| -.|||+
T Consensus 4 gy~~~~~~~~~~~~~~~~~fl~F~gs~d-~~g--------~sWCPD 40 (119)
T PF06110_consen 4 GYDEFEKLVEEYENSGKPLFLLFTGSKD-ETG--------QSWCPD 40 (119)
T ss_dssp CHHHHHHHHHC--TTTSEEEEEEE--B--TTS---------BSSHH
T ss_pred CHHHHHHHHHHhhcCCCeEEEEEEccCC-CCC--------CcccHH
Confidence 355555543 3 34788888764321 222 259998
No 26
>PRK00453 rpsF 30S ribosomal protein S6; Reviewed
Probab=23.70 E-value=1.5e+02 Score=19.23 Aligned_cols=30 Identities=17% Similarity=0.304 Sum_probs=19.1
Q ss_pred ceeCHHHHHHHH-HHHccC-CceEEEEEEeCC
Q 032504 8 MAVHDDCKLKFL-ELKAKR-TYRFIVFKIEEK 37 (139)
Q Consensus 8 i~i~~e~~~a~~-~~~~~~-~~~~vi~~i~~~ 37 (139)
+..++++...|+ .++.+. -+||++++++..
T Consensus 65 f~~~~~~i~el~~~l~~~~~VlR~~~vk~~~~ 96 (108)
T PRK00453 65 FEAPPAAIAELERLFRINEDVLRFLTVKVEEA 96 (108)
T ss_pred EEeCHHHHHHHHHHhCCCCCeEEEEEEEeccc
Confidence 345677777776 445544 368888887653
No 27
>COG0432 Uncharacterized conserved protein [Function unknown]
Probab=23.55 E-value=2.3e+02 Score=19.80 Aligned_cols=57 Identities=16% Similarity=0.214 Sum_probs=33.7
Q ss_pred ceeCHHHHHHHHHHHccCCceEEEEEEeCCcceEEEeeecCC-CCChHHHhhcCCCCCce
Q 032504 8 MAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEP-TQTYEDFAASLPAEECR 66 (139)
Q Consensus 8 i~i~~e~~~a~~~~~~~~~~~~vi~~i~~~~~~i~v~~~~~~-~~~~~~~~~~L~~~~pr 66 (139)
+.|++++.+..++..-..+ -+++|. ...+-.|.+.+..++ ..++..+++.|-+...+
T Consensus 19 vdIT~ev~~~v~esgv~~G-l~~vf~-~HtTaal~inE~ep~l~~Di~~~l~~lvP~~~~ 76 (137)
T COG0432 19 VDITDEVEKFVRESGVKNG-LLLVFV-PHTTAALTINEAEPGLKEDIERFLEKLVPEGAG 76 (137)
T ss_pred EEchHHHHHHHHHcCCccc-eEEEEe-cCcceEEEEecCCCcHHHHHHHHHHHhCCCCCC
Confidence 5689999999988854332 234443 333457777763222 13566777776555444
No 28
>PF12663 DUF3788: Protein of unknown function (DUF3788); InterPro: IPR024265 This family of functionally uncharacterised proteins is found in bacteria and archaea. Proteins in this family are typically between 137 and 149 amino acids in length and may be distantly related to RelE proteins.
Probab=23.42 E-value=1e+02 Score=21.16 Aligned_cols=28 Identities=7% Similarity=0.135 Sum_probs=23.9
Q ss_pred eeCHHHHHHHHHHHccCCceEEEEEEeC
Q 032504 9 AVHDDCKLKFLELKAKRTYRFIVFKIEE 36 (139)
Q Consensus 9 ~i~~e~~~a~~~~~~~~~~~~vi~~i~~ 36 (139)
.+++.+++.|.+-+...+-+|+.|.|.+
T Consensus 91 ~~s~~~~~~~~~~~~~~~GkWl~~~V~~ 118 (133)
T PF12663_consen 91 DLSPYVQELYDEAKTYGDGKWLMIEVRS 118 (133)
T ss_pred hcCHHHHHHHHhCCCCCCCcEEEEEeCC
Confidence 4789999999999887678999999876
No 29
>cd01271 Fe65_C Fe65 C-terminal Phosphotyrosine-binding (PTB) domain. Fe65 C-terminal Phosphotyrosine-binding (PTB) domain. Fe65 is an amyloid beta A4 precursor (APP) protein-binding. It contains an N-terminal WW domain followed by two PTB domains. The C-terminal PTB domain is responsible for APP binding. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=22.94 E-value=2.6e+02 Score=19.18 Aligned_cols=92 Identities=13% Similarity=0.182 Sum_probs=48.1
Q ss_pred HHHHHHHHHccC-CceEEEEEEeCCcceEEEeeecC-CC------CChHHHhhcCCCCCceEEEEeeeeeeccCCccccE
Q 032504 14 CKLKFLELKAKR-TYRFIVFKIEEKQKQVIVEKLGE-PT------QTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRI 85 (139)
Q Consensus 14 ~~~a~~~~~~~~-~~~~vi~~i~~~~~~i~v~~~~~-~~------~~~~~~~~~L~~~~pry~~~~~~~~~~~g~~~~k~ 85 (139)
+.+|++.++... .-+|+-..++.....|.+..... .. ..+=.|... +.++++.-|=.+ .| ...=.
T Consensus 23 ln~AI~~l~~~~~~~~w~~V~vsvaps~v~v~~~~~~~~~l~ecrVr~lSF~Gv--gKd~k~fafI~~----~~-~~~f~ 95 (124)
T cd01271 23 LNSAIDNLMSSSNKEDWLSVNVNVAPSTITVISEKNEEEVLVECRVRYLSFLGI--GKDVHTCAFIMD----TG-NQRFE 95 (124)
T ss_pred HHHHHHHHHhcCCcccCceEEEEeCCceEEEEccCccceeeeeeeEEEeccccC--CCCccEEEEEEe----cC-CCcEE
Confidence 556677766433 34566665544335666554321 10 011112221 233332222211 12 34456
Q ss_pred EEEEEcCCCCCchhhHHhHhhHHHHHh
Q 032504 86 FFIAWSPDTARVRSKMIYASSKDRFKR 112 (139)
Q Consensus 86 vfI~w~P~~a~vk~kmlyss~~~~v~~ 112 (139)
+.++||+.+|..-.+.+=+++...-++
T Consensus 96 ChVF~ce~~A~~ls~av~aAc~lrYQk 122 (124)
T cd01271 96 CHVFWCEPNAGNVSKAVEAACKLRYQK 122 (124)
T ss_pred EEEEEecCChHHHHHHHHHHHHHHHhh
Confidence 899999999988888887777665544
No 30
>PF14234 DUF4336: Domain of unknown function (DUF4336)
Probab=21.74 E-value=1.1e+02 Score=24.04 Aligned_cols=28 Identities=29% Similarity=0.344 Sum_probs=22.2
Q ss_pred cCceeCHHHHHHHHHHHccC-CceEEEEE
Q 032504 6 SGMAVHDDCKLKFLELKAKR-TYRFIVFK 33 (139)
Q Consensus 6 sgi~i~~e~~~a~~~~~~~~-~~~~vi~~ 33 (139)
|-+..++||+++++++...+ .++|||.-
T Consensus 36 SPvapT~el~~~l~~L~~~~G~VkyIVaP 64 (285)
T PF14234_consen 36 SPVAPTPELKAELDELEAQHGPVKYIVAP 64 (285)
T ss_pred CCCCCCHHHHHHHHHHhccCCceeEEEcC
Confidence 45789999999999995433 58999874
No 31
>PTZ00248 eukaryotic translation initiation factor 2 subunit 1; Provisional
Probab=21.35 E-value=4.2e+02 Score=21.21 Aligned_cols=52 Identities=8% Similarity=0.155 Sum_probs=37.6
Q ss_pred HHccCCceEEEEEEeCCcceEEEeeecCCCCChHHHhhcCCCCCceEEEEee
Q 032504 21 LKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDY 72 (139)
Q Consensus 21 ~~~~~~~~~vi~~i~~~~~~i~v~~~~~~~~~~~~~~~~L~~~~pry~~~~~ 72 (139)
++-|..+.+.|++++.++..|.|....-...+|+++.+..+...-.....+.
T Consensus 64 vkvGd~v~vkVl~VD~ekg~IdLS~K~v~~~pw~~~~e~~~~g~~v~~~V~~ 115 (319)
T PTZ00248 64 IRVGRHEVVVVLRVDKEKGYIDLSKKRVSPEDIEACEEKFSKSKKVHSIMRH 115 (319)
T ss_pred cCCCCEEEEEEEEEeCCCCEEEEEeeecccchHHHHHHhCcCCCEEEEEEEE
Confidence 4567778999999998888888765433334899999998877655555443
No 32
>COG4075 Uncharacterized conserved protein, homolog of nitrogen regulatory protein PII [Function unknown]
Probab=21.21 E-value=1.8e+02 Score=19.19 Aligned_cols=16 Identities=13% Similarity=0.322 Sum_probs=6.8
Q ss_pred CceeCHHHHHHHHHHH
Q 032504 7 GMAVHDDCKLKFLELK 22 (139)
Q Consensus 7 gi~i~~e~~~a~~~~~ 22 (139)
|+.+.++-..|++.++
T Consensus 46 gf~~~EDpE~aik~i~ 61 (110)
T COG4075 46 GFSKEEDPESAIKAIR 61 (110)
T ss_pred CcccccCHHHHHHHHH
Confidence 3444444444444443
No 33
>PF01900 RNase_P_Rpp14: Rpp14/Pop5 family; InterPro: IPR002759 This family contains proteins found in some eukaryotes and archaebacteria that are related to yeast ribonuclease P. This enzyme is essential for tRNA processing generating 5'-termini of mature tRNA molecules []. tRNA processing enzyme ribonuclease P (RNase P) consists of an RNA molecule associated with at least eight protein subunits, hPop1, Rpp14, Rpp20, Rpp25, Rpp29, Rpp30, Rpp38, and Rpp40 [].; GO: 0004540 ribonuclease activity, 0008033 tRNA processing; PDB: 2CZV_D 2AV5_B.
Probab=20.77 E-value=1.7e+02 Score=18.66 Aligned_cols=36 Identities=17% Similarity=0.263 Sum_probs=22.7
Q ss_pred eEEEEeeeeeeccCCccccEEEEEEcCCCCCchhhHHhHhhHHHHHhhcC
Q 032504 66 RYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELD 115 (139)
Q Consensus 66 ry~~~~~~~~~~~g~~~~k~vfI~w~P~~a~vk~kmlyss~~~~v~~~l~ 115 (139)
||+++.+....+ + +..++..+.++.+-++++.+.++
T Consensus 1 RYi~~~i~~~~~--~------------~~~~~~~~~l~~~I~~a~~~l~G 36 (107)
T PF01900_consen 1 RYIVFEIISEDP--S------------DPAELSPSDLKKAIREAVKELFG 36 (107)
T ss_dssp EEEEEEEEES-------------------S---HHHHHHHHHHHHHHHCH
T ss_pred CEEEEEEEEccc--c------------ccCcCCHHHHHHHHHHHHHHHcC
Confidence 778877764321 1 45777888999999999988875
No 34
>PF14307 Glyco_tran_WbsX: Glycosyltransferase WbsX
Probab=20.46 E-value=2.1e+02 Score=22.71 Aligned_cols=69 Identities=14% Similarity=0.300 Sum_probs=41.4
Q ss_pred ceEEEeeecCCCCChHHHhhcCCC--CCceEEEEeeeeeeccCCccccEEEEEEcCCCCCchhhHHhHhhHHHH-HhhcC
Q 032504 39 KQVIVEKLGEPTQTYEDFAASLPA--EECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRF-KRELD 115 (139)
Q Consensus 39 ~~i~v~~~~~~~~~~~~~~~~L~~--~~pry~~~~~~~~~~~g~~~~k~vfI~w~P~~a~vk~kmlyss~~~~v-~~~l~ 115 (139)
..+.+++.-.+..++.++...|.+ .+|||+=.+ | |-||+-|-|...+--.+ .+..=++.. +.-++
T Consensus 123 ~~~l~~q~y~~~~d~~~~~~~l~~~F~D~rYikVd-------G----KPv~~Iy~p~~~pd~~~-~~~~wr~~a~~~G~~ 190 (345)
T PF14307_consen 123 NEILIEQKYSGEDDWKEHFRYLLPYFKDPRYIKVD-------G----KPVFLIYRPGDIPDIKE-MIERWREEAKEAGLP 190 (345)
T ss_pred ccccccccCCchhHHHHHHHHHHHHhCCCCceeEC-------C----EEEEEEECcccccCHHH-HHHHHHHHHHHcCCC
Confidence 445555554443466776666554 589995442 2 56788888877754444 444444444 44567
Q ss_pred CeeE
Q 032504 116 GIQV 119 (139)
Q Consensus 116 g~~~ 119 (139)
|+.+
T Consensus 191 giyi 194 (345)
T PF14307_consen 191 GIYI 194 (345)
T ss_pred ceEE
Confidence 7876
Done!