Query 032504
Match_columns 139
No_of_seqs 122 out of 1033
Neff 8.1
Searched_HMMs 29240
Date Tue Mar 26 00:40:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032504.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032504hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1f7s_A Actin depolymerizing fa 100.0 4.1E-47 1.4E-51 265.0 16.8 139 1-139 1-139 (139)
2 2i2q_A Cofilin; N-terminal ser 100.0 2.3E-45 8E-50 255.4 16.0 134 4-139 2-135 (137)
3 2xfa_A Actin depolymerization 100.0 5E-46 1.7E-50 261.9 12.5 136 1-139 4-145 (148)
4 1cfy_A Cofilin; actin-binding, 100.0 9.2E-45 3.2E-49 254.0 16.5 134 4-138 2-136 (143)
5 1cnu_A Actophorin, ADF, cofili 100.0 6.2E-44 2.1E-48 248.1 17.6 133 6-139 1-133 (137)
6 2kvk_A Actin severing and dyna 100.0 7.1E-44 2.4E-48 250.0 17.4 133 1-138 1-133 (144)
7 1vkk_A GMF-gamma, GLIA maturat 100.0 7.2E-44 2.5E-48 252.5 16.0 136 1-138 13-150 (154)
8 2kd5_A ADF H, actin severing a 100.0 1.2E-43 4E-48 248.8 15.0 134 1-139 1-134 (144)
9 1tvj_A Cofilin; ADF, actin bin 100.0 7.9E-43 2.7E-47 249.9 16.6 134 5-139 2-154 (166)
10 2lj8_A Cofilin/actin depolymer 100.0 1.3E-42 4.6E-47 243.5 17.1 131 4-138 10-140 (144)
11 1m4j_A A6 gene product, twinfi 100.0 2.7E-43 9.2E-48 246.4 12.1 132 1-139 1-139 (142)
12 1ak6_A Destrin; actin depolyme 100.0 1.7E-43 5.8E-48 255.1 6.9 137 1-139 8-162 (174)
13 1v6f_A MGMF-beta, GLIA maturat 100.0 3.4E-41 1.2E-45 238.1 15.8 131 7-139 13-145 (151)
14 2w0i_A Twinfilin-2; cytoskelet 100.0 2.6E-41 9E-46 234.6 15.0 128 8-139 2-135 (135)
15 2vac_A Twinfilin-2; transferas 100.0 3.2E-41 1.1E-45 233.8 12.7 126 5-136 1-133 (134)
16 2d8b_A Twinfilin-1; cell-free 100.0 1.5E-40 5.2E-45 238.0 14.2 131 5-139 22-160 (166)
17 1hqz_1 ABP1P, actin-binding pr 100.0 4.4E-40 1.5E-44 229.8 14.9 130 1-139 1-136 (141)
18 3daw_B Twinfilin-1, protein A6 100.0 3E-39 1E-43 230.8 16.4 132 4-139 16-155 (164)
19 2l72_A Tgadf, actin depolymeri 100.0 8.6E-40 3E-44 227.9 12.7 118 1-132 20-138 (139)
20 3q2b_A Pfadf1, cofilin/actin-d 100.0 1.1E-39 3.9E-44 223.4 8.2 116 4-131 3-122 (124)
21 1x67_A Drebrin-like protein; c 100.0 1E-37 3.5E-42 219.1 15.6 130 4-138 4-139 (146)
22 1t3y_A Coactosin-like protein; 100.0 4E-34 1.4E-38 199.8 14.1 122 11-138 6-128 (141)
23 2ff3_A Gelsolin; protein-prote 65.2 29 0.001 23.5 8.4 87 16-119 28-115 (150)
24 3cip_G Gelsolin; actin, dictyo 63.9 28 0.00095 22.8 8.7 87 17-119 10-96 (128)
25 1t44_G Chimera of gelsolin dom 61.5 34 0.0012 23.0 8.4 87 17-119 7-93 (147)
26 2vik_A Villin 14T; actin-bindi 61.2 31 0.0011 22.5 7.4 36 82-117 56-91 (126)
27 2p2e_A Putative Fe-S biosynthe 56.9 15 0.0005 24.2 4.0 31 1-35 1-31 (128)
28 3tu5_B Gelsolin, protein cordo 54.4 54 0.0019 24.7 7.3 88 16-119 24-111 (297)
29 2raq_A Conserved protein MTH88 48.2 47 0.0016 20.9 5.1 58 13-71 23-80 (97)
30 2ay0_A Bifunctional PUTA prote 46.2 9.1 0.00031 21.5 1.5 24 1-24 1-24 (58)
31 3vbh_A EV71, genome polyprotei 34.7 58 0.002 24.6 4.7 45 53-99 116-164 (297)
32 1ncq_A Coat protein VP1; HRV, 33.7 62 0.0021 24.3 4.7 34 66-99 120-161 (289)
33 1fmd_1 Foot-and-mouth disease 32.4 52 0.0018 23.6 3.9 30 64-99 68-97 (208)
34 2x3d_A SSO6206; unknown functi 31.9 52 0.0018 20.6 3.4 58 13-71 22-79 (96)
35 2fh1_A Gelsolin; calcium, cont 30.4 1.7E+02 0.0059 22.0 7.9 77 28-119 8-84 (344)
36 2ysz_A Amyloid beta A4 precurs 30.3 1.4E+02 0.0048 20.8 6.0 92 14-114 37-138 (185)
37 2ygw_A Malonyl-COA decarboxyla 30.3 24 0.00081 28.4 2.0 34 51-90 192-225 (460)
38 3bpd_A Uncharacterized protein 29.9 28 0.00097 22.0 1.9 58 13-71 23-80 (100)
39 2gpe_A Bifunctional protein PU 29.8 16 0.00055 19.5 0.7 24 1-24 1-24 (52)
40 1tme_1 Theiler'S murine enceph 29.4 71 0.0024 23.8 4.3 33 66-98 121-153 (274)
41 2mev_1 Mengo virus coat protei 28.3 64 0.0022 24.1 3.9 33 66-98 121-153 (277)
42 1qqp_1 FMDV, protein (genome p 27.6 38 0.0013 24.4 2.5 29 65-99 69-97 (213)
43 1z7s_1 Human coxsackievirus A2 25.2 1E+02 0.0035 23.2 4.7 15 85-99 149-163 (298)
44 2k5j_A Uncharacterized protein 25.0 41 0.0014 20.0 2.0 21 3-23 9-29 (80)
45 3fxt_A Nucleoside diphosphate- 24.9 56 0.0019 21.0 2.7 14 82-95 99-112 (113)
46 1aym_1 HRV16, human rhinovirus 24.9 1.2E+02 0.004 22.8 4.8 15 85-99 139-153 (285)
47 1bev_1 Bovine enterovirus coat 23.5 1.2E+02 0.004 22.7 4.7 35 65-99 112-154 (281)
48 1zba_1 Coat protein VP1; oligo 23.1 49 0.0017 23.8 2.4 30 64-99 68-97 (212)
49 3gqq_A Protein UNC-119 homolog 22.5 1.9E+02 0.0066 20.4 5.3 48 26-73 40-89 (195)
50 4goj_C Protein UNC-119 homolog 21.4 1.8E+02 0.006 21.2 5.0 48 26-73 85-134 (240)
51 2wzr_1 Polyprotein; capsid, RN 20.3 56 0.0019 23.5 2.2 31 64-99 69-99 (219)
No 1
>1f7s_A Actin depolymerizing factor (ADF); KINK in alpha-helix 3, plant protein; HET: LDA; 2.00A {Arabidopsis thaliana} SCOP: d.109.1.2
Probab=100.00 E-value=4.1e-47 Score=264.95 Aligned_cols=139 Identities=86% Similarity=1.328 Sum_probs=119.4
Q ss_pred CCCCccCceeCHHHHHHHHHHHccCCceEEEEEEeCCcceEEEeeecCCCCChHHHhhcCCCCCceEEEEeeeeeeccCC
Q 032504 1 MANAASGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENC 80 (139)
Q Consensus 1 m~~~~sgi~i~~e~~~a~~~~~~~~~~~~vi~~i~~~~~~i~v~~~~~~~~~~~~~~~~L~~~~pry~~~~~~~~~~~g~ 80 (139)
|+|++|||.++++|+++|++++.++.+|||+|+|++++++|+++++|++..+|++|.+.||+++|||++||+++++.+|+
T Consensus 1 ~~~~~sGi~v~~e~~~af~~~~~~~~~~~ii~~i~~~~~~i~v~~~g~~~~~~~el~~~L~~~~~rY~~~~~~~~~~~~~ 80 (139)
T 1f7s_A 1 MANAASGMAVHDDCKLRFLELKAKRTHRFIVYKIEEKQKQVVVEKVGQPIQTYEEFAACLPADECRYAIYDFDFVTAENC 80 (139)
T ss_dssp ----CCCCEECHHHHHHHHHHHHHCCCSEEEEEEETTTTEEEEEEECCSSCCHHHHHTTSCTTSCEEEEEEEEEECTTSC
T ss_pred CCcCccCcEeCHHHHHHHHHHHcCCCcEEEEEEECCCCcEEEEEeecCCCCCHHHHHHhCCCCCceEEEEEeeeeccccC
Confidence 88889999999999999999999767999999999988899999998766689999999999999999999999999999
Q ss_pred ccccEEEEEEcCCCCCchhhHHhHhhHHHHHhhcCCeeEEEEeCCCCCCCHHHHHhhhC
Q 032504 81 QKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRAN 139 (139)
Q Consensus 81 ~~~k~vfI~w~P~~a~vk~kmlyss~~~~v~~~l~g~~~~i~a~d~~dl~~~~i~~~l~ 139 (139)
+++|++||+|||++||+|.||+|||++++|++.|+|++++|+|+|++||+++.|.++++
T Consensus 81 ~~~k~vfI~w~P~~a~v~~KmlyAssk~~l~~~l~g~~v~i~a~d~~el~~~~i~~~~~ 139 (139)
T 1f7s_A 81 QKSKIFFIAWCPDIAKVRSKMIYASSKDRFKRELDGIQVELQATDPTEMDLDVFRSRAN 139 (139)
T ss_dssp EEEEEEEEEECCTTSCHHHHHHHHHHHHHHHTTCTTCCEEEEECCTTC-----------
T ss_pred cccCEEEEEECCCCCChhHheehHHhHHHHHHhcCCeEEEEEECChHHCCHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999999999875
No 2
>2i2q_A Cofilin; N-terminal serine, actin-binding protein; HET: LDA; 1.72A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.3e-45 Score=255.37 Aligned_cols=134 Identities=38% Similarity=0.797 Sum_probs=114.8
Q ss_pred CccCceeCHHHHHHHHHHHccCCceEEEEEEeCCcceEEEeeecCCCCChHHHhhcCCCCCceEEEEeeeeeeccCCccc
Q 032504 4 AASGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENCQKS 83 (139)
Q Consensus 4 ~~sgi~i~~e~~~a~~~~~~~~~~~~vi~~i~~~~~~i~v~~~~~~~~~~~~~~~~L~~~~pry~~~~~~~~~~~g~~~~ 83 (139)
|+|||.++++|.++|++++.++.++||+|+|+.++++|++++ +..+.+|++|.+.||+++|||++||+++++.+| .++
T Consensus 2 ~~sGi~v~~e~~~a~~~~~~~~~~~~ii~~i~~~~~~i~v~~-~~~~~~~~el~~~L~~~~~rY~~~~~~~~~~~~-~~~ 79 (137)
T 2i2q_A 2 SFSGVKVSPECLEAFQELKLGKSLRYVVFKMNDTKTEIVVEK-KSTDKDFDTFLGDLPEKDCRYAIYDFEFNLGEG-VRN 79 (137)
T ss_dssp CCSCCEECHHHHHHHHHHHHTCCCSEEEEEECTTSSEEEEEE-EECCCCHHHHHHTSCSSSCEEEEEEEEECSSSS-CEE
T ss_pred CCCCcccCHHHHHHHHHHHCCCCceEEEEEECCCCcEEEEec-CCCCCCHHHHHHhCCCcCceEEEEEeeeecCCC-Ccc
Confidence 478999999999999999998779999999998889999987 444468999999999999999999999998887 899
Q ss_pred cEEEEEEcCCCCCchhhHHhHhhHHHHHhhcCCeeEEEEeCCCCCCCHHHHHhhhC
Q 032504 84 RIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRAN 139 (139)
Q Consensus 84 k~vfI~w~P~~a~vk~kmlyss~~~~v~~~l~g~~~~i~a~d~~dl~~~~i~~~l~ 139 (139)
+++||+|||++||+|+||+|||++++|++.|+|++++|+|+|++||+++.|.++|+
T Consensus 80 k~vfI~w~Pd~a~vk~KMlyassk~~l~~~l~g~~~~i~a~d~~el~~~~i~~kl~ 135 (137)
T 2i2q_A 80 KIIFISWSPDVAPIKSKMVYSSSKDTLRRAFTGIGTDIQATDFSEVAYETVLEKVT 135 (137)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHHHHHTTCCCCCEEEEECCCC------------
T ss_pred CEEEEEECCCCCChhHhhhhHHHHHHHHHHhcCceEEEEECChHHcCHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999885
No 3
>2xfa_A Actin depolymerization factor 2; actin binding protein, protein binding; 2.10A {Plasmodium berghei}
Probab=100.00 E-value=5e-46 Score=261.92 Aligned_cols=136 Identities=30% Similarity=0.531 Sum_probs=125.0
Q ss_pred CCCCccCceeCHHHHHHHHHHHccCCceEEEEEEeCCcceEEEe------eecCCCCChHHHhhcCCCCCceEEEEeeee
Q 032504 1 MANAASGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVE------KLGEPTQTYEDFAASLPAEECRYAVYDYDF 74 (139)
Q Consensus 1 m~~~~sgi~i~~e~~~a~~~~~~~~~~~~vi~~i~~~~~~i~v~------~~~~~~~~~~~~~~~L~~~~pry~~~~~~~ 74 (139)
||| +|||.++++|+++|++++.++.+|||+|+| .++++|+++ .+|++..+|++|++.||+++|||++||+++
T Consensus 4 msm-~sGi~v~~e~~~af~~~k~~k~~~~ii~~i-~~~~~i~v~~~~~~~~~g~~~~~~~~~~~~L~~~~prY~~y~~~~ 81 (148)
T 2xfa_A 4 GSM-VSGVNVSDECIYEFNRLKVKHLNKYIIYKI-ENLEKIVVDVLEHDMELTSLDNIIMRIKNNLKNTECRYIIADMPI 81 (148)
T ss_dssp --C-CCCCEECHHHHHHHHHHHTSCCCSEEEEEE-ETTTEEEEEEEECCTTCCCHHHHHHHHHHTCBTTBCEEEEEEEEE
T ss_pred ccc-cCCCeeCHHHHHHHHHHHCCCceEEEEEEE-CCCCEEEEEecccccccCCCCCCHHHHHHhCCcCCcEEEEEeccc
Confidence 885 899999999999999999988899999999 557899998 555433579999999999999999999999
Q ss_pred eeccCCccccEEEEEEcCCCCCchhhHHhHhhHHHHHhhcCCeeEEEEeCCCCCCCHHHHHhhhC
Q 032504 75 VTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRAN 139 (139)
Q Consensus 75 ~~~~g~~~~k~vfI~w~P~~a~vk~kmlyss~~~~v~~~l~g~~~~i~a~d~~dl~~~~i~~~l~ 139 (139)
++.+|+++++|+||+|||++|++|+||+|||+|++|++.|+|++++|+|+| +||+++.|.++|+
T Consensus 82 ~~~~g~~~~k~vfI~w~Pd~a~vr~KMlYAssk~~lk~~l~g~~~~i~atd-~el~~~~i~~k~~ 145 (148)
T 2xfa_A 82 PTPEGVLRDRIYFIFWSPGLSKPKEKMLYAASKESLVRKINGIFKSLEITC-DINEFEEELKAII 145 (148)
T ss_dssp CCSSCCCEEEEEEEEECCTTSCHHHHHHHHHHHHHHHTTCTTCSEEEEECS-CGGGHHHHHHHHH
T ss_pred ccCCCCcccCEEEEEECCCCCChHHHhHhHHHHHHHHHHhcCCeEEEEEEc-ccCCHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999 9999999999874
No 4
>1cfy_A Cofilin; actin-binding, cytoskeleton, actin-binding protein; 2.30A {Saccharomyces cerevisiae} SCOP: d.109.1.2 PDB: 1cof_A 1qpv_A
Probab=100.00 E-value=9.2e-45 Score=253.99 Aligned_cols=134 Identities=40% Similarity=0.779 Sum_probs=124.7
Q ss_pred CccCceeCHHHHHHHHHHHccCCceEEEEEEeCCcceEEEeeecCCCCChHHHhhcCCCCCceEEEEeeeeeeccC-Ccc
Q 032504 4 AASGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAEN-CQK 82 (139)
Q Consensus 4 ~~sgi~i~~e~~~a~~~~~~~~~~~~vi~~i~~~~~~i~v~~~~~~~~~~~~~~~~L~~~~pry~~~~~~~~~~~g-~~~ 82 (139)
|+|||.++++|+++|++++.++.++||+|+|++++++|+++++|+ ..+|++|++.||+++|||++||+++++.+| +++
T Consensus 2 ~~sGi~v~~e~~~a~~~~~~~~~~~~ii~~i~~~~~~i~v~~~g~-~~~~~el~~~L~~~~~rY~~~~~~~~~~~~~~~~ 80 (143)
T 1cfy_A 2 SRSGVAVADESLTAFNDLKLGKKYKFILFGLNDAKTEIVVKETST-DPSYDAFLEKLPENDCLYAIYDFEYEINGNEGKR 80 (143)
T ss_dssp ----CEECHHHHHHHHHHHHHCCCSEEEEEECTTSSEEEEEEEEC-CCCHHHHHTTSCTTCCEEEEEEEEEECSSSCCEE
T ss_pred CcCCcEeCHHHHHHHHHHHCCCCeeEEEEEEcCCCCEEEEEecCC-CCCHHHHHHhCCCCCcEEEEEEeeeecCCCcccc
Confidence 478999999999999999998779999999998889999999887 358999999999999999999999999888 899
Q ss_pred ccEEEEEEcCCCCCchhhHHhHhhHHHHHhhcCCeeEEEEeCCCCCCCHHHHHhhh
Q 032504 83 SRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRA 138 (139)
Q Consensus 83 ~k~vfI~w~P~~a~vk~kmlyss~~~~v~~~l~g~~~~i~a~d~~dl~~~~i~~~l 138 (139)
+|++||+|||++||+|+||+|||++.+|++.|+|++++|+|+|++||+++.|.++|
T Consensus 81 ~k~vfI~w~Pd~a~v~~KmlyAssk~~l~~~l~g~~~~i~a~d~~el~~~~i~~kl 136 (143)
T 1cfy_A 81 SKIVFFTWSPDTAPVRSKMVYASSKDALRRALNGVSTDVQGTDFSEVSYDSVLERV 136 (143)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHHHHHHHHCTTCCEEEEESSGGGGSHHHHHHHH
T ss_pred cCEEEEEECCCCCChhheeehHhhHHHHHHhcCCceEEEEeCChHHCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999987
No 5
>1cnu_A Actophorin, ADF, cofilin; actin-binding protein, contractIle; 2.25A {Acanthamoeba polyphaga} SCOP: d.109.1.2 PDB: 1ahq_A
Probab=100.00 E-value=6.2e-44 Score=248.09 Aligned_cols=133 Identities=48% Similarity=0.893 Sum_probs=126.0
Q ss_pred cCceeCHHHHHHHHHHHccCCceEEEEEEeCCcceEEEeeecCCCCChHHHhhcCCCCCceEEEEeeeeeeccCCccccE
Q 032504 6 SGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRI 85 (139)
Q Consensus 6 sgi~i~~e~~~a~~~~~~~~~~~~vi~~i~~~~~~i~v~~~~~~~~~~~~~~~~L~~~~pry~~~~~~~~~~~g~~~~k~ 85 (139)
|||.++++|.++|++|+.++.++||+|+|+.++++|+++++|+.+.+|++|.+.||+++|||++||+++++.+| .++++
T Consensus 1 SGi~v~~e~~~a~~~~~~~~~~~~ii~~i~~~~~~i~v~~~g~~~~~~~el~~~L~~~~~rY~~~~~~~~~~~~-~~~k~ 79 (137)
T 1cnu_A 1 SGIAVSDDCVQKFNELKLGHQHRYVTFKMNASNTEVVVEHVGGPNATYEDFKSQLPERDCRYAIFDYEFQVDGG-QRNKI 79 (137)
T ss_dssp -CCEECHHHHHHHHHHHHHCCCSEEEEEECTTSSEEEEEEECCTTCCHHHHHTTSCTTSCEEEEEEEEEEETTE-EEEEE
T ss_pred CCCccCHHHHHHHHHHHcCCCccEEEEEEcCCCCEEEEEeccCCCCCHHHHHHhCCCCCceEEEEEeeeecCCC-CccCE
Confidence 69999999999999999987799999999988899999999875568999999999999999999999999887 88999
Q ss_pred EEEEEcCCCCCchhhHHhHhhHHHHHhhcCCeeEEEEeCCCCCCCHHHHHhhhC
Q 032504 86 FFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRAN 139 (139)
Q Consensus 86 vfI~w~P~~a~vk~kmlyss~~~~v~~~l~g~~~~i~a~d~~dl~~~~i~~~l~ 139 (139)
+||+|||++||+|+||+|||++++|++.|+|++++|+|+|++||+++.|.++|+
T Consensus 80 vfI~w~Pd~a~v~~Kmlyassk~~l~~~l~g~~~~i~a~~~~el~~~~i~~kl~ 133 (137)
T 1cnu_A 80 TFILWAPDSAPIKSKMMYTSTKDSIKKKLVGIQVEVQATDAAEISEDAVSERAK 133 (137)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHHHHSTTCCEEEEECSTTTTSHHHHHHHHT
T ss_pred EEEEECCCCCChHHheehHHhHHHHHHHhcCceEEEEECChHHCCHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999985
No 6
>2kvk_A Actin severing and dynamics regulatory protein; ADF/cofilin, hormone; NMR {Leishmania donovani}
Probab=100.00 E-value=7.1e-44 Score=250.02 Aligned_cols=133 Identities=27% Similarity=0.559 Sum_probs=124.1
Q ss_pred CCCCccCceeCHHHHHHHHHHHccCCceEEEEEEeCCcceEEEeeecCCCCChHHHhhcCCCCCceEEEEeeeeeeccCC
Q 032504 1 MANAASGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENC 80 (139)
Q Consensus 1 m~~~~sgi~i~~e~~~a~~~~~~~~~~~~vi~~i~~~~~~i~v~~~~~~~~~~~~~~~~L~~~~pry~~~~~~~~~~~g~ 80 (139)
|| +|||.++++|+++|++||.++ .|||+|+|+.++++|+++.++++..+|++|.+.||+++|||++|++++++++ +
T Consensus 1 Ma--~SGv~v~de~~~af~~lk~~k-~~~vi~~I~~~~~~i~v~~~~~~~~~~~e~~~~L~~~~prY~~y~~~~~~~~-~ 76 (144)
T 2kvk_A 1 MA--ISGVTLEESVRGAIDDLRMKK-SRYVMMCIGADGKKIEVTEVGERSVNYTDLKEKFSTEKPCYVAFDFEYNDAG-S 76 (144)
T ss_dssp CC--CCCCEECHHHHHHHHHHHTTS-SSEEEEEECTTSCEEEEEEEECTTCCHHHHHHTCCTTSCCEEEEEEEEEETT-E
T ss_pred CC--cCCcccCHHHHHHHHHHhcCC-ceEEEEEEeCCCcEEEEEeccCCCCCHHHHHHhCCccCceEEEEEeeeccCC-C
Confidence 66 689999999999999999876 8999999999899999999988777999999999999999999999998765 5
Q ss_pred ccccEEEEEEcCCCCCchhhHHhHhhHHHHHhhcCCeeEEEEeCCCCCCCHHHHHhhh
Q 032504 81 QKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRA 138 (139)
Q Consensus 81 ~~~k~vfI~w~P~~a~vk~kmlyss~~~~v~~~l~g~~~~i~a~d~~dl~~~~i~~~l 138 (139)
.++|++||+|||++||+|.||+|||++.+|++.|+|. ++|||+|++||+++.|.++|
T Consensus 77 ~~~k~vfI~w~Pd~a~vk~KMlyassk~~lk~~l~~~-~~i~a~d~~el~~e~i~~kl 133 (144)
T 2kvk_A 77 KREKLILIQWIPDTARPREKMMYSASRDALSSVSEGY-LPIQANDESGLDAEEIIRKV 133 (144)
T ss_dssp EEEEEEEEEECCTTSCHHHHHHHHHHHHHHHHHCTTE-EEEEESSGGGGCHHHHHHHH
T ss_pred CcccEEEEEECCCCCCHHHHHHHHHHHHHHHHhcCCE-EEEEECChHHCCHHHHHHHH
Confidence 6889999999999999999999999999999999884 69999999999999999987
No 7
>1vkk_A GMF-gamma, GLIA maturation factor gamma; 15079298, structural GEN JCSG, protein structure initiative, PSI, joint center for S genomics; 1.35A {Mus musculus} SCOP: d.109.1.2 PDB: 1wfs_A 3l50_A
Probab=100.00 E-value=7.2e-44 Score=252.49 Aligned_cols=136 Identities=19% Similarity=0.357 Sum_probs=124.2
Q ss_pred CCCCccCceeCHHHHHHHHHHHccC--CceEEEEEEeCCcceEEEeeecCCCCChHHHhhcCCCCCceEEEEeeeeeecc
Q 032504 1 MANAASGMAVHDDCKLKFLELKAKR--TYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAE 78 (139)
Q Consensus 1 m~~~~sgi~i~~e~~~a~~~~~~~~--~~~~vi~~i~~~~~~i~v~~~~~~~~~~~~~~~~L~~~~pry~~~~~~~~~~~ 78 (139)
|+.+.+|+.++++|+++|++|+.++ .++||+|+|+.++++|+|+++++. .+|++|++.||+++|||++|+|++++++
T Consensus 13 ~~~~~~~~~v~~e~~~a~~~lk~~k~~~~~~iifkId~~~~~I~v~~~~~~-~~~~e~~~~Lp~~~pRY~vy~~~~~~~~ 91 (154)
T 1vkk_A 13 MSDSLVVCEVDPELKETLRKFRFRKETNNAAIIMKVDKDRQMVVLEDELQN-ISPEELKLELPERQPRFVVYSYKYVHDD 91 (154)
T ss_dssp -----CCCEECHHHHHHHHHHHTCCCCSCEEEEEEEETTTTEEEEEEEEES-CCHHHHHHHSCSSSCEEEEEECCEECTT
T ss_pred ccccccceeeCHHHHHHHHHHHhcccCCccEEEEEEcCCCCEEEEEEcCCC-CCHHHHHHhCCCCCcEEEEEEeeeccCC
Confidence 5556789999999999999999875 589999999998899999986553 5899999999999999999999999999
Q ss_pred CCccccEEEEEEcCCCCCchhhHHhHhhHHHHHhhcCCeeEEEEeCCCCCCCHHHHHhhh
Q 032504 79 NCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRA 138 (139)
Q Consensus 79 g~~~~k~vfI~w~P~~a~vk~kmlyss~~~~v~~~l~g~~~~i~a~d~~dl~~~~i~~~l 138 (139)
|++++|++||+|||++|++|+||+|||+++.|++.| |++++|||+|++||+++.|.++|
T Consensus 92 g~~~~klvFI~w~P~~a~vk~KMlYAssk~~l~~~l-gi~~~iea~d~~El~~e~i~~kl 150 (154)
T 1vkk_A 92 GRVSYPLCFIFSSPVGCKPEQQMMYAGSKNRLVQTA-ELTKVFEIRTTDDLTETWLKEKL 150 (154)
T ss_dssp SCEECCEEEEEECCTTSCHHHHHHHHHHHHHHHHHT-TCCCEEEESSGGGCCHHHHHHHH
T ss_pred CcccccEEEEEECCCCCChhhhhhhHhhHHHHHHhh-CceEEEEECChHhCCHHHHHHHH
Confidence 999999999999999999999999999999999999 89999999999999999999987
No 8
>2kd5_A ADF H, actin severing and dynamics regulatory protein; cofilin, solution structure, hormone; NMR {Leishmania donovani} PDB: 2kvk_A
Probab=100.00 E-value=1.2e-43 Score=248.85 Aligned_cols=134 Identities=27% Similarity=0.550 Sum_probs=126.1
Q ss_pred CCCCccCceeCHHHHHHHHHHHccCCceEEEEEEeCCcceEEEeeecCCCCChHHHhhcCCCCCceEEEEeeeeeeccCC
Q 032504 1 MANAASGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENC 80 (139)
Q Consensus 1 m~~~~sgi~i~~e~~~a~~~~~~~~~~~~vi~~i~~~~~~i~v~~~~~~~~~~~~~~~~L~~~~pry~~~~~~~~~~~g~ 80 (139)
||| |||.++++|+++|++++.++ +|||+|+|++++++|+++++|..+.+|++|.+.||+++|||++||+++++++ +
T Consensus 1 Ms~--SGi~vs~e~~~a~~~~~~~~-~~~ii~~i~~~~~~i~v~~~g~~~~~~~el~~~L~~~~~rY~~~~~~~~~~~-~ 76 (144)
T 2kd5_A 1 MAI--SGVTLEESVRGAIDDLRMKK-SRYVMMCIGADGKKIEVTEVGERSVNYTDLKEKFSTEKPCYVAFDFEYNDAG-S 76 (144)
T ss_dssp CCC--CSCBCCHHHHHHHHHHTTTS-SSEEEEEECSSSCBEEEEEECCSCCCHHHHTTTTSCSSCEEEEEEEEEESSS-C
T ss_pred CCc--cCCCcCHHHHHHHHHHHcCC-eeEEEEEECCCCCEEEEEeccCCCCCHHHHHHhCCccCcEEEEEEEEecCCC-C
Confidence 664 89999999999999999988 9999999998889999999887667999999999999999999999999877 5
Q ss_pred ccccEEEEEEcCCCCCchhhHHhHhhHHHHHhhcCCeeEEEEeCCCCCCCHHHHHhhhC
Q 032504 81 QKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRAN 139 (139)
Q Consensus 81 ~~~k~vfI~w~P~~a~vk~kmlyss~~~~v~~~l~g~~~~i~a~d~~dl~~~~i~~~l~ 139 (139)
+++|++||+|||++||+|.||+|||++.+|++.|+|+ ++|+|+|++||+++.|.++|+
T Consensus 77 ~~~k~vfI~w~Pd~a~vk~KMlyAssk~~l~~~l~g~-~~i~a~d~~el~~~~i~~kl~ 134 (144)
T 2kd5_A 77 KREKLILIQWIPDTARPREKMMYSASRDALSSVSEGY-LPIQANDESGLDAEEIIRKVR 134 (144)
T ss_dssp EEEEEEEEEECCCCSCSHHHHHHHHHGGGGTTTTCCS-EEEEESSSSSSSHHHHHHHHH
T ss_pred CccCEEEEEECCCCCCHHHHhhhHHHHHHHHHHhCCe-EEEEECChHHCCHHHHHHHHh
Confidence 6899999999999999999999999999999999999 999999999999999999874
No 9
>1tvj_A Cofilin; ADF, actin binding protein, actin depolymerizing factor, actin-binding protein; NMR {Gallus gallus}
Probab=100.00 E-value=7.9e-43 Score=249.89 Aligned_cols=134 Identities=35% Similarity=0.696 Sum_probs=123.7
Q ss_pred ccCceeCHHHHHHHHHHHccC---------CceEEEEEEeCCcceEEEee--------ecCC-CCChHHHhhcCCCCCce
Q 032504 5 ASGMAVHDDCKLKFLELKAKR---------TYRFIVFKIEEKQKQVIVEK--------LGEP-TQTYEDFAASLPAEECR 66 (139)
Q Consensus 5 ~sgi~i~~e~~~a~~~~~~~~---------~~~~vi~~i~~~~~~i~v~~--------~~~~-~~~~~~~~~~L~~~~pr 66 (139)
+|||.++++|+++|++++.++ .+|||+|+|++++..|++++ .++. ..+|++|++.||+++||
T Consensus 2 ~SGi~vs~e~~~~f~~~k~~k~~~~~~~~~~~~~iifki~~~~~~iivee~~~~~~~~~~~~~~~~~~ef~~~L~~~~pr 81 (166)
T 1tvj_A 2 ASGVTVNDEVIKVFNDMKVRKSSTPEEIKKRKKAVLFCLSDDKKQIIVEEAKQILVGDIGDTVEDPYTAFVKLLPLNDCR 81 (166)
T ss_dssp CCCCEECHHHHHHHHHHHSCCCSCHHHHTTCEEEEEEEECTTSSEEEEEEEEEEETTTBTTTBSCHHHHHHHHCCTTSCE
T ss_pred CCCCeeCHHHHHHHHHHhcCCCccccccccceeEEEEEECCCCcEEEEeccccccccccCccccCCHHHHHHhCCCCCcE
Confidence 689999999999999999885 48999999998888999987 3432 46899999999999999
Q ss_pred EEEEeeeeeeccCCccccEEEEEEcCCCCCchhhHHhHhhHHHHHhhcCCeeEEEEeCCCCCC-CHHHHHhhhC
Q 032504 67 YAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEM-GLDVFKDRAN 139 (139)
Q Consensus 67 y~~~~~~~~~~~g~~~~k~vfI~w~P~~a~vk~kmlyss~~~~v~~~l~g~~~~i~a~d~~dl-~~~~i~~~l~ 139 (139)
|++||++|.+++| .+++|+||+|||++||+|+||+|||+|++|++.|+|++++|||+|++|| ++++|.++|+
T Consensus 82 Y~vy~~~~~~~~~-~~~klvfI~W~Pd~a~vr~KMlYAssk~~lk~~l~gi~~~i~atd~~el~~~~~i~ekl~ 154 (166)
T 1tvj_A 82 YALYDATYETKES-KKEDLVFIFWAPESAPLKSKMIYASSKDAIKKKFTGIKHEWQVNGLDDIKDRSTLGEKLG 154 (166)
T ss_dssp EEEEEEEEEESSC-EEEEEEEEEECCTTSCHHHHHHHHHHHHHHHHTTTTCCCEEEESSGGGTCCHHHHHHHHT
T ss_pred EEEEeccccCCCC-CccCEEEEEECCCCCCHHHhhHHHHhHHHHHHHhcCCeEEEEECChHHcCCHHHHHHHhC
Confidence 9999999998886 8999999999999999999999999999999999999999999999999 9999999974
No 10
>2lj8_A Cofilin/actin depolymerizing factor, putative; protein binding; NMR {Trypanosoma brucei}
Probab=100.00 E-value=1.3e-42 Score=243.55 Aligned_cols=131 Identities=27% Similarity=0.633 Sum_probs=120.6
Q ss_pred CccCceeCHHHHHHHHHHHccCCceEEEEEEeCCcceEEEeeecCCCCChHHHhhcCCCCCceEEEEeeeeeeccCCccc
Q 032504 4 AASGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENCQKS 83 (139)
Q Consensus 4 ~~sgi~i~~e~~~a~~~~~~~~~~~~vi~~i~~~~~~i~v~~~~~~~~~~~~~~~~L~~~~pry~~~~~~~~~~~g~~~~ 83 (139)
|+|||.+++||+++|++||.++ .||++|+|+++ ++++++..+..+.+|++|++.||+++|||++|+|++.+.+| .++
T Consensus 10 a~SGi~vsde~~~af~~lk~~k-~~~ii~~i~d~-~~~vv~~~~~~~~~~de~~~~L~~~~prY~~y~~~~~~~~~-~~~ 86 (144)
T 2lj8_A 10 AMSGVSVADECVTALNDLRHKK-SRYVIMHIVDQ-KSIAVKTIGERGANFDQFIEAIDKNVPCYAAFDFEYTTNDG-PRD 86 (144)
T ss_dssp CCSSCEECHHHHHHHHHHTTTS-SSEEEEEEETT-TEEEEEEECSSCCCHHHHHHHCCSSSCEEEEEEEEECSSSS-SEE
T ss_pred ccCCceeCHHHHHHHHHHhcCC-ceEEEEEEECC-cEEEEEecCCCCCCHHHHHHhCcccCCcceeeeeeeccCCC-Ccc
Confidence 4689999999999999999876 89999999875 56777777777789999999999999999999999988765 578
Q ss_pred cEEEEEEcCCCCCchhhHHhHhhHHHHHhhcCCeeEEEEeCCCCCCCHHHHHhhh
Q 032504 84 RIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRA 138 (139)
Q Consensus 84 k~vfI~w~P~~a~vk~kmlyss~~~~v~~~l~g~~~~i~a~d~~dl~~~~i~~~l 138 (139)
+|+||+|||++||+|+||+|||+|++|++.|+|++ +|+|+|++||+++.|.++|
T Consensus 87 k~vfI~w~Pd~a~vk~KMlYASsk~~l~~~l~~~~-~i~a~d~~el~~e~i~~kl 140 (144)
T 2lj8_A 87 KLILISWNPDSGAPRTKMLYSSSRDALVPLTQGFQ-GIQANDASGLDFEEISRKV 140 (144)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHHHHHHHTTTSE-EEECCGGGTSCHHHHHHHH
T ss_pred cEEEEEEcCCCCCHHHHHHHHHHHHHHHHHhCCee-EEEeCChHHCCHHHHHHHH
Confidence 99999999999999999999999999999999987 8999999999999999987
No 11
>1m4j_A A6 gene product, twinfilin; mixed beta-sheet, PAIR of alpha-helices, structural protein; 1.60A {Mus musculus} SCOP: d.109.1.2
Probab=100.00 E-value=2.7e-43 Score=246.45 Aligned_cols=132 Identities=29% Similarity=0.553 Sum_probs=116.0
Q ss_pred CCCCccCceeCHHHHHHHHHHHccCCceEEEEEEeCCcceEEEeeecCCCC----ChHHHhhcC-CCCCceEEEEeeeee
Q 032504 1 MANAASGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQ----TYEDFAASL-PAEECRYAVYDYDFV 75 (139)
Q Consensus 1 m~~~~sgi~i~~e~~~a~~~~~~~~~~~~vi~~i~~~~~~i~v~~~~~~~~----~~~~~~~~L-~~~~pry~~~~~~~~ 75 (139)
||| +|||.++++|+++|++++.++ +|||+|+|++ ++|+++++|+... +|++|++.| |+++|||++||+++.
T Consensus 1 Msm-~SGi~v~~e~~~~f~~~k~~k-~~~ii~~i~~--~~ivv~~~~~~~~~~~~~~~e~~~~l~~~~~~rY~~~~~~~~ 76 (142)
T 1m4j_A 1 MSH-QTGIQASEDVKEIFARARNGK-YRLLKISIEN--EQLVVGSCSPPSDSWEQDYDSFVLPLLEDKQPCYVLFRLDSQ 76 (142)
T ss_dssp -------CCBCHHHHHHHHHHHTTT-CSEEEEEECS--SSEEEEEEECCCSCHHHHHHHHHGGGCCTTCCEEEEEEEEEE
T ss_pred CCC-cCCCeECHHHHHHHHHHhcCC-eEEEEEEEcC--CEEEEEeecCCCccccccHHHHHHhhCCCCCceEEEEEcCcC
Confidence 885 899999999999999999988 9999999987 4899998877642 478999987 799999999999998
Q ss_pred eccCCccccEEEEEEcCCCCCchhhHHhHhhHHHHHhhcCCeeE--EEEeCCCCCCCHHHHHhhhC
Q 032504 76 TAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQV--ELQATDPSEMGLDVFKDRAN 139 (139)
Q Consensus 76 ~~~g~~~~k~vfI~w~P~~a~vk~kmlyss~~~~v~~~l~g~~~--~i~a~d~~dl~~~~i~~~l~ 139 (139)
+.+ ++||+||+|||++||+|.||+|||+|++|++.|+|+++ +|+|+|++||++++|.++|.
T Consensus 77 ~~~---~~k~vfI~w~Pd~a~vr~KMlYAssk~~lk~~l~g~~~~~~i~atd~~el~~~~i~~~l~ 139 (142)
T 1m4j_A 77 NAQ---GYEWIFIAWSPDHSHVRQKMLYAATRATLKKEFGGGHIKDEVFGTVKEDVSLHGYKKYLL 139 (142)
T ss_dssp ETT---EEEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHCGGGEEEEEEESSHHHHSHHHHHHHHC
T ss_pred CCC---CceEEEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCceeEEEEEeCChHHCCHHHHHHHHh
Confidence 865 48999999999999999999999999999999999998 99999999999999999874
No 12
>1ak6_A Destrin; actin depolymerization factor, actin-binding protein; NMR {Homo sapiens} SCOP: d.109.1.2 PDB: 1ak7_A 1q8g_A 1q8x_A 3j0s_M
Probab=100.00 E-value=1.7e-43 Score=255.07 Aligned_cols=137 Identities=35% Similarity=0.667 Sum_probs=124.8
Q ss_pred CCCCccCceeCHHHHHHHHHHHccC---------CceEEEEEEeCCcceEEEeee--------cCC-CCChHHHhhcCCC
Q 032504 1 MANAASGMAVHDDCKLKFLELKAKR---------TYRFIVFKIEEKQKQVIVEKL--------GEP-TQTYEDFAASLPA 62 (139)
Q Consensus 1 m~~~~sgi~i~~e~~~a~~~~~~~~---------~~~~vi~~i~~~~~~i~v~~~--------~~~-~~~~~~~~~~L~~ 62 (139)
|+| +|||.++++|+++|++++.++ .+|||+|+|+++++.|++++. |.. ..+|++|++.||+
T Consensus 8 m~m-~SGi~vs~e~~~~f~~~k~~ks~~~~~~~~~~~~iifki~~~~~~Iivee~~~~~~~~~g~~~~~~~~ef~~~L~~ 86 (174)
T 1ak6_A 8 GNS-ASGVQVADEVCRIFYDMKVRKCSTPEEIKKRKKAVIFCLSADKKCIIVEEGKEILVGDVGVTITDPFKHFVGMLPE 86 (174)
T ss_dssp STT-TTCCCCCSHHHHHHHHTSSSCCSSHHHHGGGCCCEECCCSTTSCSCCCCSSCCCCSSSTTTTCCSSSHHHHHTSCS
T ss_pred ccc-cCCCccCHHHHHHHHHHHcCCcccccccccceeEEEEEECCCCcEEEEeccccccccccCcccCCCHHHHHHhCCC
Confidence 664 899999999999999999884 588999999988778888763 221 4689999999999
Q ss_pred CCceEEEEeeeeeeccCCccccEEEEEEcCCCCCchhhHHhHhhHHHHHhhcCCeeEEEEeCCCCCCCHHHHHhhhC
Q 032504 63 EECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRAN 139 (139)
Q Consensus 63 ~~pry~~~~~~~~~~~g~~~~k~vfI~w~P~~a~vk~kmlyss~~~~v~~~l~g~~~~i~a~d~~dl~~~~i~~~l~ 139 (139)
++|||++||+++.+++| ++++|+||+|||++|++|+||+|||+|++|++.|+|++++|||+|++||++++|.++|+
T Consensus 87 ~~prY~ly~~~~~~~~~-~~~klvfI~W~Pd~a~vk~KMlYAssk~~lk~~l~gi~~~i~atd~~El~~e~i~~kl~ 162 (174)
T 1ak6_A 87 KDCRYALYDASFETKES-RKEELMFFLWAPELAPLKSKMIYASSKDAIKKKFQGIKHECQANGPEDLNRACIAEKLG 162 (174)
T ss_dssp SCCCCEECCCCCCCSSC-SCCCCCEEEECCSSSCHHHHHSHHHHHHHHHHHCTTCSCCEEESSTTTTCHHHHHHHTT
T ss_pred CCcEEEEEeCcccCCCC-ccccEEEEEECCCCCCHHHhhHHHHHHHHHHHHhcCCeEEEEECChhhcCHHHHHHHhc
Confidence 99999999999988876 89999999999999999999999999999999999999999999999999999999974
No 13
>1v6f_A MGMF-beta, GLIA maturation factor, beta; actin binding protein, cytoskeleton, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.109.1.2
Probab=100.00 E-value=3.4e-41 Score=238.07 Aligned_cols=131 Identities=18% Similarity=0.356 Sum_probs=122.5
Q ss_pred CceeCHHHHHHHHHHHccC--CceEEEEEEeCCcceEEEeeecCCCCChHHHhhcCCCCCceEEEEeeeeeeccCCcccc
Q 032504 7 GMAVHDDCKLKFLELKAKR--TYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENCQKSR 84 (139)
Q Consensus 7 gi~i~~e~~~a~~~~~~~~--~~~~vi~~i~~~~~~i~v~~~~~~~~~~~~~~~~L~~~~pry~~~~~~~~~~~g~~~~k 84 (139)
.+.++++|+++|++|+.++ .++||+|+|+.++++|+|+++++. .+|++|.+.||+++|||++|+|++++.+|++++|
T Consensus 13 ~~~v~~e~~~a~~~lr~~k~~~~~~iifki~~~~~~I~v~~~~~~-~~~~el~~~Lp~~~prY~~~~~~~~~~~~~~~~k 91 (151)
T 1v6f_A 13 VCDVAEDLVEKLRKFRFRKETHNAAIIMKIDKDERLVVLDEELEG-VSPDELKDELPERQPRFIVYSYKYQHDDGRVSYP 91 (151)
T ss_dssp CCEECHHHHHHHHHHHTCCCSSCEEEEEEECSSSCEEEEEEEEES-CCHHHHGGGSCSSSCEEEEEECCEECTTSCEECC
T ss_pred EEEECHHHHHHHHHHHhccCCCccEEEEEEcCCCcEEEEEecCCC-CCHHHHHhhCCCCCceEEEEecccccCCCccccc
Confidence 3679999999999999876 589999999988889999987653 5899999999999999999999999999989999
Q ss_pred EEEEEEcCCCCCchhhHHhHhhHHHHHhhcCCeeEEEEeCCCCCCCHHHHHhhhC
Q 032504 85 IFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRAN 139 (139)
Q Consensus 85 ~vfI~w~P~~a~vk~kmlyss~~~~v~~~l~g~~~~i~a~d~~dl~~~~i~~~l~ 139 (139)
++||+|||++|++|+||+|||+|.+|++.+ |++++|||+|++||++++|.++|+
T Consensus 92 ~vfI~w~P~~a~vk~KMlYAssk~~l~~~l-gi~~~iea~d~~El~~~~i~~kl~ 145 (151)
T 1v6f_A 92 LCFIFSSPVGCKPEQQMMYAGSKNKLVQTA-ELTKVFEIRNTEDLTEEWLREKLG 145 (151)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHHHHHT-TCSEEEEESSGGGCCHHHHHHHHH
T ss_pred EEEEEECCCCCChHHheehHHHHHHHHHHh-CCeEEEEECChHHCCHHHHHHHHc
Confidence 999999999999999999999999999999 899999999999999999999873
No 14
>2w0i_A Twinfilin-2; cytoskeleton, actin-binding, actin binding, cofilin-like, phosphoprotein, phosphorylation, transferase, protein tyros kinase-9; 1.8A {Homo sapiens}
Probab=100.00 E-value=2.6e-41 Score=234.57 Aligned_cols=128 Identities=16% Similarity=0.397 Sum_probs=120.5
Q ss_pred ceeCHHHHHHHHHHHccCCceEEEEEEeCCcceEEEeeecCCCCChHHHhhcCCCCCceEEEEeeeeeeccCCccccEEE
Q 032504 8 MAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFF 87 (139)
Q Consensus 8 i~i~~e~~~a~~~~~~~~~~~~vi~~i~~~~~~i~v~~~~~~~~~~~~~~~~L~~~~pry~~~~~~~~~~~g~~~~k~vf 87 (139)
+.|+++|+++|++|+.++ ++||+|+|+.++++|++++++ ..+|++|.+.||+++|||++|+|++++.+| .++|++|
T Consensus 2 ~~v~~e~~~a~~~lk~~~-~~~ii~~id~~~~~I~v~~~~--~~~~~el~~~Lp~~~~rY~~y~~~~~~~~~-~~~k~vf 77 (135)
T 2w0i_A 2 MPLQPEAQRALQQLKQKM-VNYIQMKLDLERETIELVHTE--PTDVAQLPSRVPRDAARYHFFLYKHTHEGD-PLESVVF 77 (135)
T ss_dssp CCBCHHHHHHHHHHHTTS-CSEEEEEEETTTTEEEEEECC--CCCGGGGGGGSCSSSCEEEEEEEEEEETTE-EEEEEEE
T ss_pred cccCHHHHHHHHHHHcCC-CcEEEEEEeCCCCEEEEEecC--CCCHHHHHhhCCCCCcEEEEEecccccCCC-CCccEEE
Confidence 678999999999999987 999999999888999999876 358999999999999999999999988765 8999999
Q ss_pred EEEcCC-CCCchhhHHhHhhHHHHHhhcC---Cee--EEEEeCCCCCCCHHHHHhhhC
Q 032504 88 IAWSPD-TARVRSKMIYASSKDRFKRELD---GIQ--VELQATDPSEMGLDVFKDRAN 139 (139)
Q Consensus 88 I~w~P~-~a~vk~kmlyss~~~~v~~~l~---g~~--~~i~a~d~~dl~~~~i~~~l~ 139 (139)
|+|||+ +|++|+||+|||+|+.|++.+. |++ ++|||+|++||+++.|.++||
T Consensus 78 I~w~P~~~~~vk~kMlYassk~~l~~~l~~~~Gi~v~~~iea~d~~el~~~~i~~kl~ 135 (135)
T 2w0i_A 78 IYSMPGYKCSIKERMLYSSCKSRLLDSVEQDFHLEIAKKIEIGDGAELTAEFLDDEVH 135 (135)
T ss_dssp EEECCGGGSCHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCGGGCCHHHHHHHHC
T ss_pred EEECCCCCCCHHHHhHhHHhHHHHHHHHhhccCCceeEEEEcCChhhcCHHHHHHhhC
Confidence 999999 9999999999999999999998 877 699999999999999999987
No 15
>2vac_A Twinfilin-2; transferase, actin binding, phosphorylation, cofilin-like, cytoskeleton, actin-binding, protein tyrosine kinase-9; 1.70A {Homo sapiens}
Probab=100.00 E-value=3.2e-41 Score=233.81 Aligned_cols=126 Identities=29% Similarity=0.497 Sum_probs=115.7
Q ss_pred ccCceeCHHHHHHHHHHHccCCceEEEEEEeCCcceEEEeeecCCCC----ChHHHhhcC-CCCCceEEEEeeeeeeccC
Q 032504 5 ASGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQ----TYEDFAASL-PAEECRYAVYDYDFVTAEN 79 (139)
Q Consensus 5 ~sgi~i~~e~~~a~~~~~~~~~~~~vi~~i~~~~~~i~v~~~~~~~~----~~~~~~~~L-~~~~pry~~~~~~~~~~~g 79 (139)
+|||.++++|+++|++++.++ +|||+|+|++ ++|++++.++... +|++|++.| |+++|||++||+++.+.+
T Consensus 1 ~SGi~v~~e~~~~f~~~k~~k-~r~ii~~i~~--~~ivv~~~~~~~~~~~~~~~~~~~~l~~~~~prY~v~~~~~~~~~- 76 (134)
T 2vac_A 1 SMGIHATEELKEFFAKARAGS-VRLIKVVIED--EQLVLGASQEPVGRWDQDYDRAVLPLLDAQQPCYLLYRLDSQNAQ- 76 (134)
T ss_dssp CCSCEECHHHHHHHHHHHHSS-CSEEEEEEET--TEEEEEEEECCCSCHHHHHHHHHGGGCCTTCCEEEEEEEEEEETT-
T ss_pred CCCcEeCHHHHHHHHHHhcCC-eEEEEEEecC--CEEEEEeecCcCcccccCHHHHHHhcCCCCCCEEEEEECCcCCCC-
Confidence 579999999999999999988 9999999987 4899998877642 478999998 699999999999998875
Q ss_pred CccccEEEEEEcCCCCCchhhHHhHhhHHHHHhhcCCeeE--EEEeCCCCCCCHHHHHh
Q 032504 80 CQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQV--ELQATDPSEMGLDVFKD 136 (139)
Q Consensus 80 ~~~~k~vfI~w~P~~a~vk~kmlyss~~~~v~~~l~g~~~--~i~a~d~~dl~~~~i~~ 136 (139)
++||+||+|||++||+|.||+|||+|++|++.|+|+++ +|+|+|++||+++.+++
T Consensus 77 --~~k~vfI~w~Pd~a~vr~KMlYAssk~~lk~~l~g~~~~~~i~atd~~el~~~~~~~ 133 (134)
T 2vac_A 77 --GFEWLFLAWSPDNSPVRLKMLYAATRATVKKEFGGGHIKDELFGTVKDDLSFAGYQK 133 (134)
T ss_dssp --EEEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHCGGGEEEEEEESSHHHHSHHHHHH
T ss_pred --CceEEEEEEcCCCCCHHHHhHHHHHHHHHHHHcCCCeeeEEEEeCChHHcCHHHHhc
Confidence 48999999999999999999999999999999999998 99999999999999875
No 16
>2d8b_A Twinfilin-1; cell-free protein synthesis, actin-binding protein, developmental regulation, cellular remodeling, cytoskeleton, morphology; NMR {Mus musculus}
Probab=100.00 E-value=1.5e-40 Score=238.03 Aligned_cols=131 Identities=19% Similarity=0.395 Sum_probs=122.9
Q ss_pred ccCce--eCHHHHHHHHHHHccCCceEEEEEEeCCcceEEEeeecCCCCChHHHhhcCCCCCceEEEEeeeeeeccCCcc
Q 032504 5 ASGMA--VHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENCQK 82 (139)
Q Consensus 5 ~sgi~--i~~e~~~a~~~~~~~~~~~~vi~~i~~~~~~i~v~~~~~~~~~~~~~~~~L~~~~pry~~~~~~~~~~~g~~~ 82 (139)
+|||. |+++|+++|++|+.+ .++||+|+|+.++++|+|++++ ..+|++|.+.||+++|||++|+|++++++| ++
T Consensus 22 ~sgv~~~v~~e~~~a~~~lk~~-~~~~vifkId~~~~~I~v~~~~--~~~~~el~~~Lp~~~pRY~~y~~~~~~~~~-~~ 97 (166)
T 2d8b_A 22 LQGVAFPISRDAFQALEKLSKK-QLNYVQLEIDIKNETIILANTE--NTELRDLPKRIPKDSARYHFFLYKHSHEGD-YL 97 (166)
T ss_dssp SCCCCCCBCHHHHHHHHHHHTT-CCSCCEEEEETTTTEEEEEECC--CCCSTTHHHHSCSSCCEEEEEEEEEEETTE-EE
T ss_pred cCCcccCcCHHHHHHHHHHHcC-CCcEEEEEEeCCCCEEEEEecC--CCCHHHHHHhCCCCCceEEEEeccccCCCC-cc
Confidence 47999 999999999999998 5999999999988999999886 358999999999999999999999998876 69
Q ss_pred ccEEEEEEcCC-CCCchhhHHhHhhHHHHHhhcC---Ce--eEEEEeCCCCCCCHHHHHhhhC
Q 032504 83 SRIFFIAWSPD-TARVRSKMIYASSKDRFKRELD---GI--QVELQATDPSEMGLDVFKDRAN 139 (139)
Q Consensus 83 ~k~vfI~w~P~-~a~vk~kmlyss~~~~v~~~l~---g~--~~~i~a~d~~dl~~~~i~~~l~ 139 (139)
+|++||+|||+ +|++|+||+|||+|..|++.|. |+ +++|||+|++||+++.|.++|+
T Consensus 98 ~k~vFI~w~P~~~~~ik~KMlYAssk~~l~~~l~~~~Gi~v~~~iea~d~~El~~~~i~~kl~ 160 (166)
T 2d8b_A 98 ESVVFIYSMPGYTCSIRERMLYSSCKSPLLEIVERQLQMDVIRKIEIDNGDELTADFLYDEVH 160 (166)
T ss_dssp EEEEEEEECCCSSSCHHHHHHHHHTTHHHHHHHTTSSCCCCSEEEEESSSTTCCHHHHHHHHH
T ss_pred ccEEEEEECCCCCCCHHHeeehhhhHHHHHHHHhhccCCceeEEEEeCChHHCCHHHHHHHhC
Confidence 99999999999 9999999999999999999999 88 7799999999999999999874
No 17
>1hqz_1 ABP1P, actin-binding protein; cofilin homology domain, NEW YORK SGX researc for structural genomics, NYSGXRC, structural genomics, PSI; 2.10A {Saccharomyces cerevisiae} SCOP: d.109.1.2
Probab=100.00 E-value=4.4e-40 Score=229.80 Aligned_cols=130 Identities=15% Similarity=0.347 Sum_probs=117.8
Q ss_pred CCCCccCceeC---HHHHHHHHHHHccC--CceEEEEEEeCCcceEEEeeecCCCCChHHHhhcCCCCCceEEEEeeeee
Q 032504 1 MANAASGMAVH---DDCKLKFLELKAKR--TYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFV 75 (139)
Q Consensus 1 m~~~~sgi~i~---~e~~~a~~~~~~~~--~~~~vi~~i~~~~~~i~v~~~~~~~~~~~~~~~~L~~~~pry~~~~~~~~ 75 (139)
||| ++|.++ ++|+++|++++.++ .++||+|+|++ +++|+++.+|+ +|++|.+.||+++|||++|+++
T Consensus 1 ~~m--~~i~l~~~~~e~~~a~~~~~~~~~~~~~~ii~~i~~-~~~i~v~~~g~---~~~el~~~l~~~~~rY~~~~~~-- 72 (141)
T 1hqz_1 1 MAL--EPIDYTTHSREIDAEYLKIVRGSDPDTTWLIISPNA-KKEYEPESTGS---SFHDFLQLFDETKVQYGLARVS-- 72 (141)
T ss_dssp --C--CCCCCSTTHHHHHHHHHHHHHTCCTTCCEEEEEECT-TSCEEEEEEES---CHHHHHTCCCTTSCEEEEEEEC--
T ss_pred Ccc--cccccCCCCHHHHHHHHHHHhCCCCCceEEEEEEcC-CCEEEEEeecC---CHHHHHhhCCCCceEEEEEEEe--
Confidence 675 588874 99999999999884 69999999997 57899998876 7999999999999999999997
Q ss_pred eccCCccccEEEEEEcCCCCCchhhHHhHhhHHHHHh-hcCCeeEEEEeCCCCCCCHHHHHhhhC
Q 032504 76 TAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKR-ELDGIQVELQATDPSEMGLDVFKDRAN 139 (139)
Q Consensus 76 ~~~g~~~~k~vfI~w~P~~a~vk~kmlyss~~~~v~~-~l~g~~~~i~a~d~~dl~~~~i~~~l~ 139 (139)
.+|+.++|+|||+|||++||+|+||+|||++++|++ .|+|++++|++++++||+++.|.++|+
T Consensus 73 -~~~~~~~k~vfI~w~Pd~~~vk~Kmlyas~k~~l~~~~l~g~~~~i~a~~~~el~~e~i~~kl~ 136 (141)
T 1hqz_1 73 -PPGSDVEKIIIIGWCPDSAPLKTRASFAANFAAVANNLFKGYHVQVTARDEDDLDENELLMKIS 136 (141)
T ss_dssp -CTTCSCCEEEEEEECCTTSCHHHHHHHHHHHHHHHHHTSCSCSEEEEESSGGGGCHHHHHHHHH
T ss_pred -cCCCceeeEEEEEECCCCCChhheEEEeccHHHHHHHhCCceEEEEEECChHHCCHHHHHHHHH
Confidence 456789999999999999999999999999999997 999999999999999999999999874
No 18
>3daw_B Twinfilin-1, protein A6; actin depolymerisation, actin binding proteins, cytoskeleton, structural protein/contractIle protein complex; HET: ATP; 2.55A {Mus musculus} PDB: 2hd7_A
Probab=100.00 E-value=3e-39 Score=230.78 Aligned_cols=132 Identities=19% Similarity=0.393 Sum_probs=120.2
Q ss_pred CccCc--eeCHHHHHHHHHHHccCCceEEEEEEeCCcceEEEeeecCCCCChHHHhhcCCCCCceEEEEeeeeeeccCCc
Q 032504 4 AASGM--AVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENCQ 81 (139)
Q Consensus 4 ~~sgi--~i~~e~~~a~~~~~~~~~~~~vi~~i~~~~~~i~v~~~~~~~~~~~~~~~~L~~~~pry~~~~~~~~~~~g~~ 81 (139)
..+|| .|+++|+++|++|+.++ .+||+|+|+.++++|+|++. . +.+|++|.+.||+++|||+||+|+++++ |+.
T Consensus 16 ~~~gv~~~v~~e~~~a~~~lk~~~-~~~iifkId~~~e~I~v~~~-~-~~~~~df~~~Lp~~~pRY~vyd~~~~~~-g~~ 91 (164)
T 3daw_B 16 TLQGVAFPISRDAFQALEKLSKKQ-LNYVQLEIDIKNETIILANT-E-NTELRDLPKRIPKDSARYHFFLYKHSHE-GDY 91 (164)
T ss_dssp --CCCCCCBCHHHHHHHHHHHTTS-CSEEEEEEETTTTEEEEEEC-C-CCCGGGSGGGSCSSSCEEEEEEEEEEET-TEE
T ss_pred ccCcceEEECHHHHHHHHHHHcCC-ceEEEEEEeCCCCEEEEEeC-C-CCCHHHHHHhCCccCceEEEEecccccC-CCc
Confidence 35677 69999999999999985 89999999998899999987 3 3699999999999999999999999877 666
Q ss_pred cccEEEEEEcCC-CCCchhhHHhHhhHHHHHhhcC---Ce--eEEEEeCCCCCCCHHHHHhhhC
Q 032504 82 KSRIFFIAWSPD-TARVRSKMIYASSKDRFKRELD---GI--QVELQATDPSEMGLDVFKDRAN 139 (139)
Q Consensus 82 ~~k~vfI~w~P~-~a~vk~kmlyss~~~~v~~~l~---g~--~~~i~a~d~~dl~~~~i~~~l~ 139 (139)
..+++||+|||+ +|++|+||+|||+|+.|++.+. |+ ..+|||+|++||++++|.++|+
T Consensus 92 ~~~~ifi~~~P~~~a~ik~kMlYASsK~~l~~~l~~~~Gi~i~k~iea~d~~Elt~e~l~ekl~ 155 (164)
T 3daw_B 92 LESVVFIYSMPGYTCSIRERMLYSSCKSPLLEIVERQLQMDVIRKIEIDNGDELTADFLYDEVH 155 (164)
T ss_dssp EEEEEEEEECCSTTSCHHHHHHHHHTHHHHHHHHHHHHCCCEEEEEEESSSSSCCHHHHHHHHS
T ss_pred cccEEEEEEcCCCCCCHHHHHHHHHhHHHHHHHHhhccCCceeEEEEeCChHHcCHHHHHhHhC
Confidence 778999999999 9999999999999999999998 88 6799999999999999999986
No 19
>2l72_A Tgadf, actin depolymerizing factor, putative; ADF/cofilin, actin binding, protein binding; NMR {Toxoplasma gondii}
Probab=100.00 E-value=8.6e-40 Score=227.91 Aligned_cols=118 Identities=42% Similarity=0.767 Sum_probs=107.9
Q ss_pred CCCCccCceeCHHHHHHHHHHHccCCceEEEEEEeCCcceEEEeeecCCCCChHHHhhcCCCCCceEEEEeeeeeeccCC
Q 032504 1 MANAASGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENC 80 (139)
Q Consensus 1 m~~~~sgi~i~~e~~~a~~~~~~~~~~~~vi~~i~~~~~~i~v~~~~~~~~~~~~~~~~L~~~~pry~~~~~~~~~~~g~ 80 (139)
|+| +|||.++++|+++|++|+.++.+|||+|+|++ ++|+++++++ + +|++|++.||+++|||++|| +|
T Consensus 20 ~~m-~sGi~vs~e~~~af~~lk~~k~~~~ii~~I~~--~eivv~~~g~-~-~~~el~~~Lp~~~prY~~y~------dg- 87 (139)
T 2l72_A 20 RHM-ASGMGVDENCVARFNELKIRKTVKWIVFKIEN--TKIVVEKDGK-G-NADEFRGALPANDCRFGVYD------CG- 87 (139)
T ss_dssp --C-CTTCEECHHHHHHHHHHTTTTCCCEEEEEEET--TEEEEEEEES-S-HHHHHHHHCCCCSCCEEEEE------CS-
T ss_pred ccc-cCCCCcCHHHHHHHHHHhCCCCeeEEEEEEcC--CEEEEeecCC-C-CHHHHHHhCCCCCcEEEEEc------CC-
Confidence 454 89999999999999999998779999999998 6788988887 4 89999999999999999999 34
Q ss_pred ccccEEEEEEcCCCCCchhhHHhHhhHHHHHhhcCCeeEE-EEeCCCCCCCHH
Q 032504 81 QKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVE-LQATDPSEMGLD 132 (139)
Q Consensus 81 ~~~k~vfI~w~P~~a~vk~kmlyss~~~~v~~~l~g~~~~-i~a~d~~dl~~~ 132 (139)
++|+||+|||++||+|+||+|||+|++|++.|+|++++ +++++++||+++
T Consensus 88 --~k~vFI~w~Pd~a~vk~KMlYASsk~~lk~~l~g~~v~~iea~~~~DLte~ 138 (139)
T 2l72_A 88 --NKIQFVLWCPDNAPVKPRMTYASSKDALLKKLDGATAVALEAHEMGDLAPL 138 (139)
T ss_dssp --SCEEEEEECCTTSCHHHHHHHHHHHHHHHHHHCSCCSCEEEESSTTTTSCC
T ss_pred --CcEEEEEECCCCCChhHeeehHhhHHHHHHHhCCceEEEEEeCCHHHCccC
Confidence 79999999999999999999999999999999999885 999999999875
No 20
>3q2b_A Pfadf1, cofilin/actin-depolymerizing factor homolog 1; actin regulator, actin-binding protein; HET: TAR; 1.60A {Plasmodium falciparum} PDB: 2xf1_A
Probab=100.00 E-value=1.1e-39 Score=223.43 Aligned_cols=116 Identities=27% Similarity=0.572 Sum_probs=107.2
Q ss_pred CccCceeCHHHHHHHHHHHccCCceEEEEEEeCCcceEEEeeecCCCCChHHHhhcCCCCC---ceEEEEeeeeeeccCC
Q 032504 4 AASGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEE---CRYAVYDYDFVTAENC 80 (139)
Q Consensus 4 ~~sgi~i~~e~~~a~~~~~~~~~~~~vi~~i~~~~~~i~v~~~~~~~~~~~~~~~~L~~~~---pry~~~~~~~~~~~g~ 80 (139)
++|||.++++|+++|++||.++++|||+|+|++ ++|+|+..++. .+|++|++.||+++ |||++|++
T Consensus 3 m~SGi~vs~e~~~~f~~lk~~k~~~~ii~kI~~--~~ivv~~~~~~-~~~~~f~~~Lp~~~~~~prY~vy~~-------- 71 (124)
T 3q2b_A 3 MISGIRVNDNCVTEFNNMKIRKTCGWIIFVIQN--CEIIIHSKGAS-TTLTELVQSIDKNNEIQCAYVVFDA-------- 71 (124)
T ss_dssp -CCSCEECHHHHHHHHHHHHHTSSEEEEEEEET--TEEEEEEEEEC-SCHHHHHHHHHHCTTCSEEEEEEEC--------
T ss_pred CCCCCccCHHHHHHHHHHhcCCCcEEEEEEEcC--CEEEEeccCCC-CCHHHHHHHccccCCCCcEEEEEec--------
Confidence 478999999999999999998779999999997 58999988764 68999999999999 99999997
Q ss_pred ccccEEEEEEcCCCCCchhhHHhHhhHHHHHhhcCCeeE-EEEeCCCCCCCH
Q 032504 81 QKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQV-ELQATDPSEMGL 131 (139)
Q Consensus 81 ~~~k~vfI~w~P~~a~vk~kmlyss~~~~v~~~l~g~~~-~i~a~d~~dl~~ 131 (139)
+++++||+|||++|++|+||+|||+|++|++.|+|+++ +++|+|++||++
T Consensus 72 -~~k~vfI~w~Pd~a~vk~KMlYASsk~~l~~~l~g~~~~~i~a~d~~dlt~ 122 (124)
T 3q2b_A 72 -VSKIHFFMYARESSNSRDRMTYASSKQAILKKIEGVNVLTSVIESAQDVAD 122 (124)
T ss_dssp -SSCEEEEEEECTTSCHHHHHHHHHHHHHHHTTSTTSEECCSCBCSHHHHTT
T ss_pred -CCCEEEEEECCCCCChhHhhhhHHHHHHHHHHhCCCceEEEEecCHHHccc
Confidence 46999999999999999999999999999999999996 999999999875
No 21
>1x67_A Drebrin-like protein; cell-free protein synthesis, actin-binding protein, SH3P7, MABP1, T-cell lymphocyte signaling and regulation; NMR {Homo sapiens}
Probab=100.00 E-value=1e-37 Score=219.09 Aligned_cols=130 Identities=18% Similarity=0.293 Sum_probs=120.2
Q ss_pred CccCceeC-----HHHHHHHHHHHccC-CceEEEEEEeCCcceEEEeeecCCCCChHHHhhcCCCCCceEEEEeeeeeec
Q 032504 4 AASGMAVH-----DDCKLKFLELKAKR-TYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTA 77 (139)
Q Consensus 4 ~~sgi~i~-----~e~~~a~~~~~~~~-~~~~vi~~i~~~~~~i~v~~~~~~~~~~~~~~~~L~~~~pry~~~~~~~~~~ 77 (139)
++||+.++ ++|+++|++++.++ .+||++|+|++++++|+++.+|++ +|+||++.||+++|||++||+++
T Consensus 4 ~~~~m~~~l~~~~~e~~~a~~~v~~~~~~~~wi~~~i~~~~~~l~v~~~G~~--~~~e~~~~L~~~~~~Y~~~r~~~--- 78 (146)
T 1x67_A 4 GSSGMAANLSRNGPALQEAYVRVVTEKSPTDWALFTYEGNSNDIRVAGTGEG--GLEEMVEELNSGKVMYAFCRVKD--- 78 (146)
T ss_dssp SSSSSCCCCCTTHHHHHHHHHHHHCSSSSCSEEEEEESSSSSCEEEEEEESS--CHHHHHHHCCTTSEEEEEEEEEC---
T ss_pred cccceEEEcCCCCHHHHHHHHHHHcCCCCccEEEEEEeCCCcEEEEEeccCC--CHHHHHhhCCCCceEEEEEEEEc---
Confidence 57788777 99999999999987 599999999887678999998874 79999999999999999999974
Q ss_pred cCCccccEEEEEEcCCCCCchhhHHhHhhHHHHHhhcCCeeEEEEeCCCCCCCHHHHHhhh
Q 032504 78 ENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRA 138 (139)
Q Consensus 78 ~g~~~~k~vfI~w~P~~a~vk~kmlyss~~~~v~~~l~g~~~~i~a~d~~dl~~~~i~~~l 138 (139)
+++++.|+|||.|||+++|+|.||+||+++++|++.|+|++++|+|++++||+++.|.+++
T Consensus 79 ~~~~~~K~vfI~W~pd~a~v~~Km~yas~k~~lk~~l~g~~~ei~at~~~el~~~~i~~k~ 139 (146)
T 1x67_A 79 PNSGLPKFVLINWTGEGVNDVRKGACASHVSTMASFLKGAHVTINARAEEDVEPECIMEKV 139 (146)
T ss_dssp SSSCSEEEEEEEEECTTSCHHHHHHHHHHHHHHHHHTTTEEEEECCCSGGGGCHHHHHHHH
T ss_pred CCCCeeeEEEEEECCCCCChhheeeehhhHHHHHHhcCCcEEEEEeCChHHCCHHHHHHHH
Confidence 3567899999999999999999999999999999999999999999999999999999886
No 22
>1t3y_A Coactosin-like protein; beta sheet, protein binding; 1.15A {Homo sapiens} SCOP: d.109.1.2 PDB: 1t2l_A 1t3x_A 1vfq_A 1tmw_A 1wnj_A 1udm_A 1wm4_A
Probab=100.00 E-value=4e-34 Score=199.79 Aligned_cols=122 Identities=14% Similarity=0.305 Sum_probs=113.6
Q ss_pred CHHHHHHHHHHHccC-CceEEEEEEeCCcceEEEeeecCCCCChHHHhhcCCCCCceEEEEeeeeeeccCCccccEEEEE
Q 032504 11 HDDCKLKFLELKAKR-TYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIA 89 (139)
Q Consensus 11 ~~e~~~a~~~~~~~~-~~~~vi~~i~~~~~~i~v~~~~~~~~~~~~~~~~L~~~~pry~~~~~~~~~~~g~~~~k~vfI~ 89 (139)
+++|.++|++++.++ .++|++|++++ .+|+|+.+|+ +|+||++.||+++|||++||+. ...+++++.|+|||.
T Consensus 6 ~~~~~~a~~~v~~~~~~~~wilf~~~~--~~i~v~~~G~---g~~e~~~~L~~~~~~Ya~~r~~-~~~~~~~~~K~vfI~ 79 (141)
T 1t3y_A 6 KEACRAAYNLVRDDGSAVIWVTFKYDG--STIVPGEQGA---EYQHFIQQCTDDVRLFAFVRFT-TGDAMSKRSKFALIT 79 (141)
T ss_dssp HHHHHHHHHHHHCTTSSCCEEEEEEET--TEEEEEEEES---SHHHHHHHCCTTCEEEEEEEEE-ECSGGGCEEEEEEEE
T ss_pred hHHHHHHHHHHHcCCCCceEEEEEEcC--CEEEEEecCC---CHHHHHhhCCCCceEEEEEEEE-ecCCCCceeeEEEEE
Confidence 689999999999987 59999999987 3599999887 4999999999999999999996 556678899999999
Q ss_pred EcCCCCCchhhHHhHhhHHHHHhhcCCeeEEEEeCCCCCCCHHHHHhhh
Q 032504 90 WSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRA 138 (139)
Q Consensus 90 w~P~~a~vk~kmlyss~~~~v~~~l~g~~~~i~a~d~~dl~~~~i~~~l 138 (139)
|||+++|++.||+||+++..|++.|+|++++|+|+|++||+++.|.+++
T Consensus 80 W~pd~~~~~~K~~~as~k~~vk~~l~g~~~~i~a~d~~el~~~~I~~kv 128 (141)
T 1t3y_A 80 WIGENVSGLQRAKTGTDKTLVKEVVQNFAKEFVISDRKELEEDFIKSEL 128 (141)
T ss_dssp EECTTSCHHHHHHHHHHHHHHTTTSCCCSEEEEECSGGGGSHHHHHHHH
T ss_pred ECCCCCCHHHhhhHHHHHHHHHHHhcccEEEEEeCChHHCCHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999886
No 23
>2ff3_A Gelsolin; protein-protein complex, structural protein/contractIle protein complex; HET: ATP; 2.00A {Homo sapiens} SCOP: d.109.1.1 PDB: 2ff6_G*
Probab=65.18 E-value=29 Score=23.49 Aligned_cols=87 Identities=14% Similarity=0.138 Sum_probs=52.7
Q ss_pred HHHHHHHccCCceEEEEEEeCCcceEEEeeecCCCCChHHHhhcCCCCCceEEE-EeeeeeeccCCccccEEEEEEcCCC
Q 032504 16 LKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAV-YDYDFVTAENCQKSRIFFIAWSPDT 94 (139)
Q Consensus 16 ~a~~~~~~~~~~~~vi~~i~~~~~~i~v~~~~~~~~~~~~~~~~L~~~~pry~~-~~~~~~~~~g~~~~k~vfI~w~P~~ 94 (139)
.+|+.... ....-|.+|++ .+.+.+.+. .+ ..+-+ .-||++ |.+. ...| +....+-+|+...
T Consensus 28 ~~f~~~g~--~~gl~VWrIe~-~~~v~vp~~-----~~----G~Fys-gD~YIVl~ty~--~~~g--~~~~~IyfW~G~~ 90 (150)
T 2ff3_A 28 PEFLKAGK--EPGLQIWRVEK-FDLVPVPTN-----LY----GDFFT-GDAYVILKTVQ--LRNG--NLQYDLHYWLGNE 90 (150)
T ss_dssp HHHHHTTS--SSEEEEEEEET-TEEEECCGG-----GT----TEEET-TSEEEEEEEEE--CTTS--SEEEEEEEEECTT
T ss_pred hhhhccCC--CCCeEEEEEeC-CEEEECChH-----Hc----CeecC-CCeEEEEEEEe--cCCC--ceEEEEEEEeCCC
Confidence 45665433 35677889986 222222221 12 22333 345554 4442 2333 4567889999999
Q ss_pred CCchhhHHhHhhHHHHHhhcCCeeE
Q 032504 95 ARVRSKMIYASSKDRFKRELDGIQV 119 (139)
Q Consensus 95 a~vk~kmlyss~~~~v~~~l~g~~~ 119 (139)
|+..++..-|.--..+.+.++|--+
T Consensus 91 ss~de~gaAA~~aveLd~~lgg~~v 115 (150)
T 2ff3_A 91 CSQDESGAAAIFTVQLDDYLNGRAV 115 (150)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTTCCE
T ss_pred CCchhHHHHHHHHHHHHHHcCCCce
Confidence 9999998877777778888876443
No 24
>3cip_G Gelsolin; actin, dictyostelium discoideum, actin-associated methyl histidine, ATP-binding, cytoskeleton, nucleotide-BIN phosphoprotein; HET: HIC ATP; 1.60A {Homo sapiens} SCOP: d.109.1.1 PDB: 3ci5_G* 1p8z_G* 1d4x_G* 1nlv_G* 1mdu_A* 1nm1_G* 1nmd_G* 1yag_G* 1yvn_G* 3cjb_G* 3cjc_G* 1esv_S* 1eqy_S* 1c0g_S* 1c0f_S* 1dej_S* 3a5l_S* 3a5m_S* 3a5n_S* 3a5o_S*
Probab=63.89 E-value=28 Score=22.82 Aligned_cols=87 Identities=14% Similarity=0.150 Sum_probs=52.8
Q ss_pred HHHHHHccCCceEEEEEEeCCcceEEEeeecCCCCChHHHhhcCCCCCceEEEEeeeeeeccCCccccEEEEEEcCCCCC
Q 032504 17 KFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTAR 96 (139)
Q Consensus 17 a~~~~~~~~~~~~vi~~i~~~~~~i~v~~~~~~~~~~~~~~~~L~~~~pry~~~~~~~~~~~g~~~~k~vfI~w~P~~a~ 96 (139)
+|+..-. ....-|.+|++. +.+.+.+. .+ ..+-. .-||++.. .+....| +....+-+|+...++
T Consensus 10 ~~~~~g~--~~gl~vWrIe~~-~~~~vp~~-----~~----G~Fy~-gd~YIvl~-ty~~~~g--~~~~~i~~W~G~~ss 73 (128)
T 3cip_G 10 EFLKAGK--EPGLQIWRVEKF-DLVPVPTN-----LY----GDFFT-GDAYVILK-TVQLRNG--NLQYDLHYWLGNECS 73 (128)
T ss_dssp HHHHTTS--SSEEEEEEEETT-EEEECCGG-----GT----TEEET-TCEEEEEE-EEECTTS--CEEEEEEEEECTTCC
T ss_pred hHHhcCC--CCCeEEEEEeCC-EEEECChH-----Hc----CeecC-CCeEEEEE-EEecCCC--ceEEEEEEEcCCCCC
Confidence 5555432 356778899862 22222211 12 22333 34555532 2323333 446788999999999
Q ss_pred chhhHHhHhhHHHHHhhcCCeeE
Q 032504 97 VRSKMIYASSKDRFKRELDGIQV 119 (139)
Q Consensus 97 vk~kmlyss~~~~v~~~l~g~~~ 119 (139)
..++..-|.--..+.+.++|--+
T Consensus 74 ~de~g~Aa~~aveLd~~lgg~~v 96 (128)
T 3cip_G 74 QDESGAAAIFTVQLDDYLNGRAV 96 (128)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCEE
T ss_pred cchHHHHHHHHHHHHHHcCCCce
Confidence 99998888777788888877444
No 25
>1t44_G Chimera of gelsolin domain 1 and C-terminal domain of thymosin beta-4; structural protein; HET: ATP; 2.00A {Homo sapiens} SCOP: d.109.1.1
Probab=61.53 E-value=34 Score=23.00 Aligned_cols=87 Identities=14% Similarity=0.150 Sum_probs=52.1
Q ss_pred HHHHHHccCCceEEEEEEeCCcceEEEeeecCCCCChHHHhhcCCCCCceEEEEeeeeeeccCCccccEEEEEEcCCCCC
Q 032504 17 KFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTAR 96 (139)
Q Consensus 17 a~~~~~~~~~~~~vi~~i~~~~~~i~v~~~~~~~~~~~~~~~~L~~~~pry~~~~~~~~~~~g~~~~k~vfI~w~P~~a~ 96 (139)
+|+..-. ....-|.+|++. +.+.+... .+ ..+-. .-||++.. .+....| +....+-+|+...++
T Consensus 7 ~f~~~g~--~~gl~VWrIe~~-~~~~vp~~-----~~----G~Fy~-gd~YIvl~-ty~~~~g--~~~~~i~~W~G~~ss 70 (147)
T 1t44_G 7 EFLKAGK--EPGLQIWRVEKF-DLVPVPTN-----LY----GDFFT-GDAYVILK-TVQLRNG--NLQYDLHYWLGNECS 70 (147)
T ss_dssp HHHHTTS--SSEEEEEEEETT-EEEECCGG-----GT----TEEET-TCEEEEEE-EEECTTS--CEEEEEEEEECTTCC
T ss_pred hhhccCC--CCCeEEEEEeCC-EEEECChH-----Hc----CeecC-CCeEEEEE-EEecCCC--ceEEEEEEEeCCCCC
Confidence 5555432 356778899862 22222211 12 22333 34555532 2323333 456788999999999
Q ss_pred chhhHHhHhhHHHHHhhcCCeeE
Q 032504 97 VRSKMIYASSKDRFKRELDGIQV 119 (139)
Q Consensus 97 vk~kmlyss~~~~v~~~l~g~~~ 119 (139)
..++..-|.--..|.+.++|--+
T Consensus 71 ~de~g~Aa~~aveLd~~lgg~~v 93 (147)
T 1t44_G 71 QDESGAAAIFTVQLDDYLNGRAV 93 (147)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCCE
T ss_pred hhHHHHHHHHHHHHHHHcCCCce
Confidence 99998877777778888876433
No 26
>2vik_A Villin 14T; actin-binding protein, capping protein, calcium-binding protein, cytoskeletal protein; NMR {Gallus gallus} SCOP: d.109.1.1 PDB: 2vil_A
Probab=61.21 E-value=31 Score=22.51 Aligned_cols=36 Identities=8% Similarity=0.023 Sum_probs=29.8
Q ss_pred cccEEEEEEcCCCCCchhhHHhHhhHHHHHhhcCCe
Q 032504 82 KSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGI 117 (139)
Q Consensus 82 ~~k~vfI~w~P~~a~vk~kmlyss~~~~v~~~l~g~ 117 (139)
+....+-+|+...|+..++..-|.--..+.+.++|-
T Consensus 56 ~~~~~i~~W~G~~ss~de~g~Aa~~aveLd~~lgg~ 91 (126)
T 2vik_A 56 GFSYNIHYWLGKNSSQDEQGAAAIYTTQMDEYLGSV 91 (126)
T ss_dssp SEEEEEEEEECTTSCHHHHHHHHHHHHHHHHHTTSC
T ss_pred ceeEEEEEEeCCCCCchhHHHHHHHHHHHHHHcCCC
Confidence 456788999999999999988777777788888764
No 27
>2p2e_A Putative Fe-S biosynthesis protein; hypothetical protein, beta-barrel, 10399L structural genomics, protein structure initiative, PSI-2; 2.48A {Lactobacillus salivarius} SCOP: b.124.1.1
Probab=56.86 E-value=15 Score=24.17 Aligned_cols=31 Identities=16% Similarity=0.301 Sum_probs=23.7
Q ss_pred CCCCccCceeCHHHHHHHHHHHccCCceEEEEEEe
Q 032504 1 MANAASGMAVHDDCKLKFLELKAKRTYRFIVFKIE 35 (139)
Q Consensus 1 m~~~~sgi~i~~e~~~a~~~~~~~~~~~~vi~~i~ 35 (139)
|+| .|.+++.+.+.++++...+ .+.+.|+++
T Consensus 1 ~~M---~ItlT~~A~~~l~~~l~~~-~~~l~Lr~~ 31 (128)
T 2p2e_A 1 MSL---KITVTDDAAKKLQRYTDDS-NAVLLLDFD 31 (128)
T ss_dssp --C---EEEECHHHHHHHHHHHTCT-TEEEEEEEC
T ss_pred Ccc---EEEECHHHHHHHHHHHhcC-CceEEEEEe
Confidence 565 5999999999999998766 336778887
No 28
>3tu5_B Gelsolin, protein cordon-BLeu, thymosin beta-4; unusual hairpin conformation in the D-loop, structural prote binding protein complex; HET: ATP; 3.00A {Homo sapiens}
Probab=54.39 E-value=54 Score=24.68 Aligned_cols=88 Identities=13% Similarity=0.159 Sum_probs=51.7
Q ss_pred HHHHHHHccCCceEEEEEEeCCcceEEEeeecCCCCChHHHhhcCCCCCceEEEEeeeeeeccCCccccEEEEEEcCCCC
Q 032504 16 LKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTA 95 (139)
Q Consensus 16 ~a~~~~~~~~~~~~vi~~i~~~~~~i~v~~~~~~~~~~~~~~~~L~~~~pry~~~~~~~~~~~g~~~~k~vfI~w~P~~a 95 (139)
.+|+..-.. .-.-|-+|++ -.++..... .+-. +-. .-||+++. .+....| +..+.+-+|+...+
T Consensus 24 ~~~~~~g~~--~Gl~iWrIe~--~~~~~v~~~----~~G~----Fy~-gd~Yivl~-t~~~~~g--~~~~~i~~W~G~~s 87 (297)
T 3tu5_B 24 PEFLKAGKE--PGLQIWRVEK--FDLVPVPTN----LYGD----FFT-GDAYVILK-TVQLRNG--NLQYDLHYWLGNEC 87 (297)
T ss_dssp HHHHHTTSS--SEEEEEEEET--TEEEECCGG----GTTE----EET-TCEEEEEE-EEECTTS--CEEEEEEEEECTTC
T ss_pred hhHhccCCC--CceEEEEEcC--CEEEECCHH----HcCe----ecC-CCeEEEeE-eEECCCC--ceeEEEEEEeCCCC
Confidence 455554322 3355778886 233322211 1222 223 44666653 2333333 34577889999999
Q ss_pred CchhhHHhHhhHHHHHhhcCCeeE
Q 032504 96 RVRSKMIYASSKDRFKRELDGIQV 119 (139)
Q Consensus 96 ~vk~kmlyss~~~~v~~~l~g~~~ 119 (139)
+..++..-|.--..|...|+|--+
T Consensus 88 s~de~g~aa~~av~Ld~~lgg~~v 111 (297)
T 3tu5_B 88 SQDESGAAAIFTVQLDDYLNGRAV 111 (297)
T ss_dssp CHHHHHHHHHHHHHHHHHTTTCCE
T ss_pred ChhHHHHHHHHHHHHHHHcCCCce
Confidence 999998877777788888887443
No 29
>2raq_A Conserved protein MTH889; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 3.11A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: d.58.61.1
Probab=48.16 E-value=47 Score=20.88 Aligned_cols=58 Identities=10% Similarity=0.222 Sum_probs=42.4
Q ss_pred HHHHHHHHHHccCCceEEEEEEeCCcceEEEeeecCCCCChHHHhhcCCCCCceEEEEe
Q 032504 13 DCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYD 71 (139)
Q Consensus 13 e~~~a~~~~~~~~~~~~vi~~i~~~~~~i~v~~~~~~~~~~~~~~~~L~~~~pry~~~~ 71 (139)
++..++.++..-.+++.-+..++.+.+.+.+.-.|.. -+|+++.+.+..-.+.-.=.+
T Consensus 23 d~A~~l~~~~gV~gVnItv~EvD~eTe~lkitiEG~~-id~d~I~~~IE~~Gg~IHSID 80 (97)
T 2raq_A 23 EYAKYLSELRGVEGVNITLMEIDKETENIKVTIQGND-LDFDEITRAIESYGGSIHSVD 80 (97)
T ss_dssp HHHHHHHHSTTCCEEEEEEEEECSSCEEEEEEEECSS-CCHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHhCCCcceEEEEEEEeeccccEEEEEEEecC-CCHHHHHHHHHHcCCeEEeee
Confidence 4555666666555688889999998888888877775 689999988776655444333
No 30
>2ay0_A Bifunctional PUTA protein; ribbon-helix-helix, DNA-binding domain, proline catabo proline utilization A, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.43.1.11
Probab=46.15 E-value=9.1 Score=21.54 Aligned_cols=24 Identities=13% Similarity=0.309 Sum_probs=18.6
Q ss_pred CCCCccCceeCHHHHHHHHHHHcc
Q 032504 1 MANAASGMAVHDDCKLKFLELKAK 24 (139)
Q Consensus 1 m~~~~sgi~i~~e~~~a~~~~~~~ 24 (139)
|++..-+|.+++++.+.++.+...
T Consensus 1 M~~~~~svrL~~el~~rL~~lA~~ 24 (58)
T 2ay0_A 1 MGTTTMGVMLDDATRERIKSAATR 24 (58)
T ss_dssp --CEEEEEEECHHHHHHHHHHHHH
T ss_pred CCCcceEeECCHHHHHHHHHHHHH
Confidence 666667899999999999999653
No 31
>3vbh_A EV71, genome polyprotein, capsid protein VP1; hand-foot-and-mouth disease, enterovirus uncoating, P factor, adaptor-sensor; HET: SPH; 2.30A {Human enterovirus 71} PDB: 3vbf_A* 3vbo_A 3vbs_A* 4aed_A* 3vbr_A 3vbu_A
Probab=34.72 E-value=58 Score=24.61 Aligned_cols=45 Identities=13% Similarity=0.237 Sum_probs=25.5
Q ss_pred hHHHhhcCCCCCceEEEEeeeeee----ccCCccccEEEEEEcCCCCCchh
Q 032504 53 YEDFAASLPAEECRYAVYDYDFVT----AENCQKSRIFFIAWSPDTARVRS 99 (139)
Q Consensus 53 ~~~~~~~L~~~~pry~~~~~~~~~----~~g~~~~k~vfI~w~P~~a~vk~ 99 (139)
+.++..+|. ---|.-+|++++- ..|....-.+-|+|+|.+||+..
T Consensus 116 ~~QlRrKLe--~FTY~RfDlEvT~V~t~~~~~~~~~~~QvmyvPpGaP~p~ 164 (297)
T 3vbh_A 116 YAQMRRKVE--LFTYMRFDAEFTFVACTPTGEVVPQLLQYMFVPPGAPKPD 164 (297)
T ss_dssp SHHHHHHHT--TEEEEEEEEEEEEEEECTTSCCCCCEEEEEEECTTSCCCC
T ss_pred HHHHHhhhc--eeEEEeeeeEEEEEEecCCCCCCceEEEEEEcCCCCCCCC
Confidence 445666663 2455555555551 12222223456899999999754
No 32
>1ncq_A Coat protein VP1; HRV, pleconaril, icosahedral virus; HET: W11; 2.50A {Human rhinovirus 14} SCOP: b.121.4.1 PDB: 1d3i_1* 1hrv_1* 1hri_1* 1na1_A* 1k5m_A* 1r08_1* 1r09_1* 1rvf_1 1vrh_1* 2hwb_1* 2hwc_1* 2r04_1* 2r06_1* 2r07_1* 2rm2_1* 2rr1_1* 2rs1_1* 2rs3_1* 2rs5_1* 4rhv_1 ...
Probab=33.72 E-value=62 Score=24.29 Aligned_cols=34 Identities=15% Similarity=0.313 Sum_probs=20.5
Q ss_pred eEEEEeeeeee---c---cC--CccccEEEEEEcCCCCCchh
Q 032504 66 RYAVYDYDFVT---A---EN--CQKSRIFFIAWSPDTARVRS 99 (139)
Q Consensus 66 ry~~~~~~~~~---~---~g--~~~~k~vfI~w~P~~a~vk~ 99 (139)
-|.-||++.+- . .| ....-.+-|+|+|.+||+..
T Consensus 120 TY~RfDlEvT~V~t~~~~~~~~~~~~~~~qvmyvPpGaP~p~ 161 (289)
T 1ncq_A 120 TYVRFDSEYTILATASQPDSANYSSNLVVQAMYVPPGAPNPK 161 (289)
T ss_dssp EEEEEEEEEEEEEEEECCSCCSSCCCCEEEEEEECTTSCCCC
T ss_pred eEEcccEEEEEEEcCCccCCcccCCceEEEEEEeCCCCCCCc
Confidence 56667776651 1 01 11223456899999999764
No 33
>1fmd_1 Foot-and-mouth disease virus (subunit VP1); icosahedral virus; 3.50A {Foot-and-mouth disease virus} SCOP: b.121.4.1 PDB: 1qgc_1 1qgc_5
Probab=32.37 E-value=52 Score=23.56 Aligned_cols=30 Identities=20% Similarity=0.397 Sum_probs=20.8
Q ss_pred CceEEEEeeeeeeccCCccccEEEEEEcCCCCCchh
Q 032504 64 ECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRS 99 (139)
Q Consensus 64 ~pry~~~~~~~~~~~g~~~~k~vfI~w~P~~a~vk~ 99 (139)
-.-|..+|++.+-.. -.-|+|+|.+||+..
T Consensus 68 ~FTY~rfDlEvtvv~------~~qvmyvPpGaP~p~ 97 (208)
T 1fmd_1 68 AATYYFSDLEIAVTH------TGKLTWVPNGAPVSA 97 (208)
T ss_dssp TEEEEEEEEEEEEEE------EEEEEEECTTCCGGG
T ss_pred ccEEEeccEEEEEEE------eeEEEEECCCCCchh
Confidence 345667777665321 157999999999875
No 34
>2x3d_A SSO6206; unknown function; 2.70A {Sulfolobus solfataricus}
Probab=31.90 E-value=52 Score=20.63 Aligned_cols=58 Identities=16% Similarity=0.249 Sum_probs=39.9
Q ss_pred HHHHHHHHHHccCCceEEEEEEeCCcceEEEeeecCCCCChHHHhhcCCCCCceEEEEe
Q 032504 13 DCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYD 71 (139)
Q Consensus 13 e~~~a~~~~~~~~~~~~vi~~i~~~~~~i~v~~~~~~~~~~~~~~~~L~~~~pry~~~~ 71 (139)
++..++.++..-.+++..+..++.+++.+.+.-.|.. -+|+++.+.+.+-.+.-.=.+
T Consensus 22 d~A~~l~~~~gV~gVnItv~EvD~eTe~lkItIEG~~-idfd~I~~~IE~~Gg~IHSID 79 (96)
T 2x3d_A 22 DLAERISKLDGVEGVNISVTDMDVETMGLMIIIEGTS-LNFDDIRKMLEEEGCAIHSID 79 (96)
T ss_dssp HHHHHHHTSTTEEEEEEEEEEECSSEEEEEEEEEESS-CCHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHhCCCcceEEEEEEEeeccccEEEEEEEecC-CCHHHHHHHHHHcCCeEEeee
Confidence 3444455554434578888889988888888777775 689999988876665544433
No 35
>2fh1_A Gelsolin; calcium, contractIle protein; 1.55A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1p8x_A 2fh2_A 2fh3_A 2fh4_A 1h1v_G* 1nph_A
Probab=30.41 E-value=1.7e+02 Score=21.96 Aligned_cols=77 Identities=17% Similarity=0.289 Sum_probs=45.9
Q ss_pred eEEEEEEeCCcceEEEeeecCCCCChHHHhhcCCCCCceEEEEeeeeeeccCCccccEEEEEEcCCCCCchhhHHhHhhH
Q 032504 28 RFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSK 107 (139)
Q Consensus 28 ~~vi~~i~~~~~~i~v~~~~~~~~~~~~~~~~L~~~~pry~~~~~~~~~~~g~~~~k~vfI~w~P~~a~vk~kmlyss~~ 107 (139)
..-|.+|++. +.+.+.+. . ...+-+.+|--++|.|. .. | +....+-+|++..|+..++..-|.--
T Consensus 8 ~~~vwrIe~~-~~~~v~~~-----~----~G~Fy~gD~YIvl~ty~--~~-~--~~~~~i~~W~G~~ss~de~~~aa~~~ 72 (344)
T 2fh1_A 8 QKQIWRIEGS-NKVPVDPA-----T----YGQFYGGDSYIILYNYR--HG-G--RQGQIIYNWQGAQSTQDEVAASAILT 72 (344)
T ss_dssp EEEEEEEETT-EEEECCGG-----G----TTEEETTSEEEEEEEEE--ET-T--EEEEEEEEEECTTCCHHHHHHHHHHH
T ss_pred CEEEEEEcCC-eEEECCHH-----H----cCeecCCCeEEEEEEee--cC-C--CceEEEEEEecCCCCHhHHHHHHHHH
Confidence 5567788863 23333211 1 23344444444445543 22 2 34678889999999999987766666
Q ss_pred HHHHhhcCCeeE
Q 032504 108 DRFKRELDGIQV 119 (139)
Q Consensus 108 ~~v~~~l~g~~~ 119 (139)
..+...++|-.+
T Consensus 73 ~~ld~~lgg~~v 84 (344)
T 2fh1_A 73 AQLDEELGGTPV 84 (344)
T ss_dssp HHHHHHTTSCSE
T ss_pred HHHHHHhCCCce
Confidence 667777876433
No 36
>2ysz_A Amyloid beta A4 precursor protein-binding family B member 2 and amyloid beta A4 protein...; chimera, Fe65L, PID domain, amyloid precursor protein; NMR {Mus musculus}
Probab=30.31 E-value=1.4e+02 Score=20.82 Aligned_cols=92 Identities=11% Similarity=0.121 Sum_probs=49.6
Q ss_pred HHHHHHHHHc---cCCceEEEEEEeCCcceEEEeeecCCCCChH-------HHhhcCCCCCceEEEEeeeeeeccCCccc
Q 032504 14 CKLKFLELKA---KRTYRFIVFKIEEKQKQVIVEKLGEPTQTYE-------DFAASLPAEECRYAVYDYDFVTAENCQKS 83 (139)
Q Consensus 14 ~~~a~~~~~~---~~~~~~vi~~i~~~~~~i~v~~~~~~~~~~~-------~~~~~L~~~~pry~~~~~~~~~~~g~~~~ 83 (139)
+.+|++.++. ++..+-+.+.|.. ..|.+.+......-+. -|.. . +..+++.-|=.. ++ ...
T Consensus 37 ~~~Ai~kl~~~~~~~k~~~V~L~VS~--~gI~v~d~~t~~e~l~~~~I~~ISFc~-v-d~d~k~FaFI~~----~~-~~~ 107 (185)
T 2ysz_A 37 LNSAIENLMTSSSKEDWPSVNMNVAD--ATVTVISEKNEEEVLVECRVRFLSFMG-V-GKDVHTFAFIMD----TG-NQR 107 (185)
T ss_dssp HHHHHHHHHHHSCTTTSCEEEEEEET--TEEEEEESSCSSCEEEEECTTTCCEEE-C-CSSTTEEEEEEE----SS-SSC
T ss_pred HHHHHHHHHhccccccCceEEEEEec--CEEEEEecCCCcceeeeccEEEeeeec-c-CCCCcEEEEEec----CC-Ccc
Confidence 4555555544 2346778888887 4576665432100011 1111 1 345554444332 22 334
Q ss_pred cEEEEEEcCCCCCchhhHHhHhhHHHHHhhc
Q 032504 84 RIFFIAWSPDTARVRSKMIYASSKDRFKREL 114 (139)
Q Consensus 84 k~vfI~w~P~~a~vk~kmlyss~~~~v~~~l 114 (139)
=.+.++||..+|..-...+=++++...++.+
T Consensus 108 f~CHVF~c~k~A~~vs~aV~~Af~l~yQk~l 138 (185)
T 2ysz_A 108 FECHVFWCEPNAANVSEAVQAACSGPSSGIE 138 (185)
T ss_dssp EEEEEEEESSCSTTHHHHHHHHHHSCCCCCC
T ss_pred EEEEEEEccCchHHHHHHHHHHHHHHHHHhh
Confidence 5689999999987666655555554444444
No 37
>2ygw_A Malonyl-COA decarboxylase, mitochondrial; lyase; 2.80A {Homo sapiens}
Probab=30.29 E-value=24 Score=28.45 Aligned_cols=34 Identities=6% Similarity=0.039 Sum_probs=26.4
Q ss_pred CChHHHhhcCCCCCceEEEEeeeeeeccCCccccEEEEEE
Q 032504 51 QTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAW 90 (139)
Q Consensus 51 ~~~~~~~~~L~~~~pry~~~~~~~~~~~g~~~~k~vfI~w 90 (139)
.+|+|+..-|..+--||++|+...+ .+++|||.-
T Consensus 192 ~~W~DLkrRL~pdRRCfaFFHp~mP------~EPLIfVeV 225 (460)
T 2ygw_A 192 KNWMDMKRRVGPYRRCYFFSHCSTP------GEPLVVLHV 225 (460)
T ss_dssp CSHHHHHHHTSTTEEEEEEEETTBT------TCCSEEEEE
T ss_pred CCHHHHHHhcCCCCeEEEecCCCCC------CCCeEEEee
Confidence 4899999999888999999986532 357777743
No 38
>3bpd_A Uncharacterized protein; heptamer, Mg+2 ION, PSI-2, NYSGXRC, structural genom protein structure initiative; 2.80A {Archaeoglobus fulgidus dsm 4304} SCOP: d.58.61.1
Probab=29.91 E-value=28 Score=21.97 Aligned_cols=58 Identities=17% Similarity=0.209 Sum_probs=39.6
Q ss_pred HHHHHHHHHHccCCceEEEEEEeCCcceEEEeeecCCCCChHHHhhcCCCCCceEEEEe
Q 032504 13 DCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYD 71 (139)
Q Consensus 13 e~~~a~~~~~~~~~~~~vi~~i~~~~~~i~v~~~~~~~~~~~~~~~~L~~~~pry~~~~ 71 (139)
++..++.++..-.+++..+..++.+++.+.+.-.|.. .+|+++.+.+.+-.+.-.=.+
T Consensus 23 dlA~~l~~~~gV~gVnItV~EvD~eTe~lkItIEG~d-Idfd~I~~~IE~~GgvIHSID 80 (100)
T 3bpd_A 23 VFALKLSELENVDGVNIHLSEIDQATENIKITILGNN-LDYEQIKGVIEDMGGVIHSVD 80 (100)
T ss_dssp HHHHHHHTSTTEEEEEEEEEEECSSEEEEEEEEEEEE-ECHHHHHHHHHTTTCEEEEEE
T ss_pred HHHHHHHhCCCcceEEEEEEEeeccccEEEEEEEecC-CCHHHHHHHHHHcCCeEEeee
Confidence 3444455554444678888889988888877777764 589999988877665544443
No 39
>2gpe_A Bifunctional protein PUTA; ribbon-helix-helix, DNA-binding domain, proline catabo proline utilization A, DNA binding protein; 1.90A {Escherichia coli} PDB: 2rbf_A* 2jxg_A 2jxh_A 2jxi_A*
Probab=29.75 E-value=16 Score=19.55 Aligned_cols=24 Identities=13% Similarity=0.313 Sum_probs=18.1
Q ss_pred CCCCccCceeCHHHHHHHHHHHcc
Q 032504 1 MANAASGMAVHDDCKLKFLELKAK 24 (139)
Q Consensus 1 m~~~~sgi~i~~e~~~a~~~~~~~ 24 (139)
|++..-+|.+++++.+.++.+...
T Consensus 1 M~~~~~sirl~~~l~~~l~~lA~~ 24 (52)
T 2gpe_A 1 MGTTTMGVKLDDATRERIKSAATR 24 (52)
T ss_dssp -CEEEEEEEEEHHHHHHHHHHHHH
T ss_pred CCcceEEEECCHHHHHHHHHHHHH
Confidence 555556788999999999999653
No 40
>1tme_1 Theiler'S murine encephalomyelitis virus (subunit VP1); icosahedral virus; 2.80A {Theiler} SCOP: b.121.4.1 PDB: 1tmf_1
Probab=29.38 E-value=71 Score=23.85 Aligned_cols=33 Identities=15% Similarity=0.291 Sum_probs=20.1
Q ss_pred eEEEEeeeeeeccCCccccEEEEEEcCCCCCch
Q 032504 66 RYAVYDYDFVTAENCQKSRIFFIAWSPDTARVR 98 (139)
Q Consensus 66 ry~~~~~~~~~~~g~~~~k~vfI~w~P~~a~vk 98 (139)
-|.-+|++.+-.......-.+-|+|+|.+||+.
T Consensus 121 TY~rfDLEvTvv~~~~~~~~~qvmyvPpGaP~p 153 (274)
T 1tme_1 121 TYYKCDLEVTVSALGTDTVASVLRWAPTGAPAD 153 (274)
T ss_dssp EEEEEEEEEEEEECSCSCCEEEEEEECTTCCCC
T ss_pred eEecccEEEEEEEcCCCCceEEEEEcCCCCCCC
Confidence 566667665532211111235689999999987
No 41
>2mev_1 Mengo virus coat protein (subunit VP1); cardio picornavirus coat protein, icosahedral virus; 3.00A {Mengo virus} SCOP: b.121.4.1 PDB: 1mec_1
Probab=28.28 E-value=64 Score=24.13 Aligned_cols=33 Identities=12% Similarity=0.354 Sum_probs=19.5
Q ss_pred eEEEEeeeeeeccCCccccEEEEEEcCCCCCch
Q 032504 66 RYAVYDYDFVTAENCQKSRIFFIAWSPDTARVR 98 (139)
Q Consensus 66 ry~~~~~~~~~~~g~~~~k~vfI~w~P~~a~vk 98 (139)
-|..+|++.+-.......--.-|+|+|.+||+.
T Consensus 121 TY~rfDLEvtvv~~~~~~~~~~vmyvPpGaP~~ 153 (277)
T 2mev_1 121 VYYKCDLEVTLSPHTSGAHGLLVRWCPTGTPTK 153 (277)
T ss_dssp SEEEEEEEEEEEESCSSCCCEEEEEECTTSCCC
T ss_pred eEecccEEEEEEEcCCCCcceEEEECCCCCCCC
Confidence 577777766532111001123599999999985
No 42
>1qqp_1 FMDV, protein (genome polyprotein); heparan sulphate, virus-receptor interactions/protein carbohydrate interactions; HET: IDX SGN IDS; 1.90A {Foot-and-mouth disease virus} SCOP: b.121.4.1 PDB: 1bbt_1 1fod_1
Probab=27.57 E-value=38 Score=24.37 Aligned_cols=29 Identities=17% Similarity=0.329 Sum_probs=19.5
Q ss_pred ceEEEEeeeeeeccCCccccEEEEEEcCCCCCchh
Q 032504 65 CRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRS 99 (139)
Q Consensus 65 pry~~~~~~~~~~~g~~~~k~vfI~w~P~~a~vk~ 99 (139)
.-|..+|++.+-.. -.-+.|+|.+||+..
T Consensus 69 fTY~rfDlEvTvv~------~~qvmwvPpGAP~p~ 97 (213)
T 1qqp_1 69 STYYFSDLEIAVKH------EGDLTWVPNGAPEKA 97 (213)
T ss_dssp EEEEEEEEEEEEEE------ESCEEEECTTCCGGG
T ss_pred cEEEeeeEEEEEEE------ccEEEEECCCCCCcc
Confidence 35666676655321 136899999999876
No 43
>1z7s_1 Human coxsackievirus A21; picornavirus, capsid protein, viral protein, icosahedral virus; HET: MYR G; 3.20A {Human coxsackievirus A21} PDB: 1z7z_1*
Probab=25.22 E-value=1e+02 Score=23.17 Aligned_cols=15 Identities=27% Similarity=0.397 Sum_probs=12.2
Q ss_pred EEEEEEcCCCCCchh
Q 032504 85 IFFIAWSPDTARVRS 99 (139)
Q Consensus 85 ~vfI~w~P~~a~vk~ 99 (139)
..-|+|+|.+||+..
T Consensus 149 ~~qvmyvPpGAP~p~ 163 (298)
T 1z7s_1 149 VYQIMYIPPGAPRPS 163 (298)
T ss_dssp EEEEEEECTTSCCCS
T ss_pred EEEEEEcCCCCCCCC
Confidence 346999999999865
No 44
>2k5j_A Uncharacterized protein YIIF; structure, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri 5 str}
Probab=24.99 E-value=41 Score=19.97 Aligned_cols=21 Identities=5% Similarity=0.063 Sum_probs=16.8
Q ss_pred CCccCceeCHHHHHHHHHHHc
Q 032504 3 NAASGMAVHDDCKLKFLELKA 23 (139)
Q Consensus 3 ~~~sgi~i~~e~~~a~~~~~~ 23 (139)
|..-+|.++++..+.++.+..
T Consensus 9 m~risI~Lpdel~~~Ld~la~ 29 (80)
T 2k5j_A 9 MGRILLDLSNEVIKQLDDLEV 29 (80)
T ss_dssp CCEEEEEECHHHHHHHHHHHH
T ss_pred eEEEEEECCHHHHHHHHHHHH
Confidence 344567799999999999865
No 45
>3fxt_A Nucleoside diphosphate-linked moiety X motif 6; nudix, NUDT6, GFG, FGF2AS, antisense basic fibroblast growth FGF-2 regulation, hydrolase; 2.30A {Homo sapiens}
Probab=24.88 E-value=56 Score=21.04 Aligned_cols=14 Identities=7% Similarity=0.233 Sum_probs=10.2
Q ss_pred cccEEEEEEcCCCC
Q 032504 82 KSRIFFIAWSPDTA 95 (139)
Q Consensus 82 ~~k~vfI~w~P~~a 95 (139)
..-++|..|.|++-
T Consensus 99 ~dylmL~~WLpe~p 112 (113)
T 3fxt_A 99 SDSSTLTLWLREGP 112 (113)
T ss_dssp BTEEEEEEECCC--
T ss_pred CCeEEEEEecCcCC
Confidence 34789999999863
No 46
>1aym_1 HRV16, human rhinovirus 16 coat protein; RNA, site-directed mutagenesis, icosahedral virus; HET: MYR DAO; 2.15A {Human rhinovirus SP} SCOP: b.121.4.1 PDB: 1ayn_1* 1c8m_1* 1ncr_A* 1nd2_A* 1nd3_A* 1qju_1* 1qjx_1* 1qjy_1* 1d3e_1 1fpn_1* 1v9u_1* 3dpr_A* 3tn9_1 1r1a_1* 2hwd_1* 2hwe_1* 2hwf_1*
Probab=24.86 E-value=1.2e+02 Score=22.77 Aligned_cols=15 Identities=13% Similarity=0.330 Sum_probs=12.2
Q ss_pred EEEEEEcCCCCCchh
Q 032504 85 IFFIAWSPDTARVRS 99 (139)
Q Consensus 85 ~vfI~w~P~~a~vk~ 99 (139)
..-|+|+|.+||+..
T Consensus 139 ~~qvmyvPPGap~p~ 153 (285)
T 1aym_1 139 VMQYMYVPPGAPIPT 153 (285)
T ss_dssp EEEEEEECTTSCCCS
T ss_pred EEEEEEcCCCCCCCC
Confidence 356999999999764
No 47
>1bev_1 Bovine enterovirus coat proteins VP1 to VP4; bovine enterovirus VG-5-27, picornavirus, icosahedral virus; HET: MYR; 3.00A {Bovine enterovirus} SCOP: b.121.4.1
Probab=23.49 E-value=1.2e+02 Score=22.65 Aligned_cols=35 Identities=20% Similarity=0.433 Sum_probs=20.9
Q ss_pred ceEEEEeeeeee---cc-----CCccccEEEEEEcCCCCCchh
Q 032504 65 CRYAVYDYDFVT---AE-----NCQKSRIFFIAWSPDTARVRS 99 (139)
Q Consensus 65 pry~~~~~~~~~---~~-----g~~~~k~vfI~w~P~~a~vk~ 99 (139)
--|.-+|++.+- .. +....-.+-|+|+|.+||+..
T Consensus 112 FTY~RfDlEvT~V~t~~~~~~~~~~~~~~~qvmyvPpGaP~p~ 154 (281)
T 1bev_1 112 FTYMRFDVEFTIIATSSTGQNVTTEQHTTYQVMYVPPGAPVPS 154 (281)
T ss_dssp EEEEEEEEEEEEEEECBCTTSCBCCCCCEEEEEEECTTSCCCC
T ss_pred ceEEcCCEEEEEEEcCCcccCCCCCCceEEEEEEcCCCCCCCc
Confidence 367777776661 11 111122346899999999764
No 48
>1zba_1 Coat protein VP1; oligosaccharide receptor, virus/viral protein, icosahedral V virus; HET: SGN IDS; 2.00A {Foot-and-mouth disease virus} PDB: 1zbe_1
Probab=23.05 E-value=49 Score=23.76 Aligned_cols=30 Identities=20% Similarity=0.371 Sum_probs=20.4
Q ss_pred CceEEEEeeeeeeccCCccccEEEEEEcCCCCCchh
Q 032504 64 ECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRS 99 (139)
Q Consensus 64 ~pry~~~~~~~~~~~g~~~~k~vfI~w~P~~a~vk~ 99 (139)
-.-|..+|++.+-.. . .-|+|+|.+||+..
T Consensus 68 ~FTY~rfDlEvtvv~----~--~qvmyvPpGAP~p~ 97 (212)
T 1zba_1 68 AATYYFSDLEIVVRH----D--GNLTWVPNGAPEAA 97 (212)
T ss_dssp TEEEEEEEEEEEEEE----E--SCEEEECTTCCGGG
T ss_pred cceEEeeeEEEEEEE----e--eEEEEECCCCCcch
Confidence 345777777665321 1 37899999999874
No 49
>3gqq_A Protein UNC-119 homolog A; human retinal protein 4, HRG4, U119A_human, HR3066A, NESG, structural genomics, PSI-2, protein structure initiative; 1.95A {Homo sapiens} PDB: 3rbq_A*
Probab=22.49 E-value=1.9e+02 Score=20.35 Aligned_cols=48 Identities=21% Similarity=0.340 Sum_probs=24.6
Q ss_pred CceEEEEEEe-CCcceEEEeeecCCC-CChHHHhhcCCCCCceEEEEeee
Q 032504 26 TYRFIVFKIE-EKQKQVIVEKLGEPT-QTYEDFAASLPAEECRYAVYDYD 73 (139)
Q Consensus 26 ~~~~vi~~i~-~~~~~i~v~~~~~~~-~~~~~~~~~L~~~~pry~~~~~~ 73 (139)
++.+.-|+|- .++.+|..+-.-+.. ....+....++++..|++-|.+.
T Consensus 40 ~I~F~~F~IRD~etg~vLFei~k~~~~~~~~~~~~~~~~~~~R~vrYqF~ 89 (195)
T 3gqq_A 40 KIDFVRFKIRDMDSGTVLFEIKKPPVSERLPINRRDLDPNAGRFVRYQFT 89 (195)
T ss_dssp CCEEEEEEEEETTTCCEEEEEECCC--------------CTTCEEEEECC
T ss_pred eeEEEEEEEeccCCCCEEEEecCCCCccccccccccCCccccceEEEEeC
Confidence 4778888884 456666655443321 12233455677889999999986
No 50
>4goj_C Protein UNC-119 homolog A; small G protein ARL, GDI-like solubilizing factors, cilia, S protein; HET: GNP; 2.10A {Homo sapiens} PDB: 4gok_G*
Probab=21.36 E-value=1.8e+02 Score=21.23 Aligned_cols=48 Identities=21% Similarity=0.350 Sum_probs=21.5
Q ss_pred CceEEEEEEe-CCcceEEEeeecCC-CCChHHHhhcCCCCCceEEEEeee
Q 032504 26 TYRFIVFKIE-EKQKQVIVEKLGEP-TQTYEDFAASLPAEECRYAVYDYD 73 (139)
Q Consensus 26 ~~~~vi~~i~-~~~~~i~v~~~~~~-~~~~~~~~~~L~~~~pry~~~~~~ 73 (139)
++.+.-|+|- .++.+|..+-..+. ..........++.+..||+-|.|.
T Consensus 85 ~I~F~~F~IRD~etg~vlFei~kp~~~~~~~~~~~~~d~~agR~VrY~F~ 134 (240)
T 4goj_C 85 KIDFVRFKIRDMDSGTVLFEIKKPPVSERLPINRRDLDPNAGRFVRYQFT 134 (240)
T ss_dssp CCEEEEEEEEETTTCCEEEEEEC------------------CCEEEEEEC
T ss_pred CcceeEEEEecCCCCeEEEEecCCCccccccccccccCcccCceEEEecC
Confidence 4778888884 45556655433222 112223344577788899999885
No 51
>2wzr_1 Polyprotein; capsid, RNA replication, RNA-directed RNA polymerase, nucleotidyltransferase, HOST cytoplasmic vesicle, capsid protein; 3.00A {Foot-and-mouth disease virus}
Probab=20.26 E-value=56 Score=23.54 Aligned_cols=31 Identities=16% Similarity=0.479 Sum_probs=19.7
Q ss_pred CceEEEEeeeeeeccCCccccEEEEEEcCCCCCchh
Q 032504 64 ECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRS 99 (139)
Q Consensus 64 ~pry~~~~~~~~~~~g~~~~k~vfI~w~P~~a~vk~ 99 (139)
-.-|..+|++.+--. .. .-|+|+|.+||+..
T Consensus 69 ~FTY~rfDlEvtiv~----~~-~qvmyvPpGaP~p~ 99 (219)
T 2wzr_1 69 AATYYFSDLEVACVG----TN-AWVGWTPNGSPVLT 99 (219)
T ss_dssp TEEEEEEEEEEEEES----SC-SCCEEECTTCCCCS
T ss_pred ecEEEeccEEEEEEe----cC-CEEEEECCCCCCCc
Confidence 345666666654211 01 26899999999876
Done!