BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032505
(139 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2E2C|A Chain A, E2-C, An Ubiquitin Conjugating Enzyme Required For The
Destruction Of Mitotic Cyclins
Length = 156
Score = 177 bits (449), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 77/135 (57%), Positives = 109/135 (80%), Gaps = 1/135 (0%)
Query: 2 SLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFE 61
+L+MSG D G++AFP+G+++F W+ T++G K T+YE L YKL+L FP DYP+KPP VKF
Sbjct: 20 TLLMSG-DPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFT 78
Query: 62 TMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK 121
T C+HPNVDQ GNICLDIL++ W+++YD RTILLS+QSLLGEPN SPLN+ AA + +N+
Sbjct: 79 TPCWHPNVDQSGNICLDILKENWTASYDVRTILLSLQSLLGEPNNASPLNAQAADMWSNQ 138
Query: 122 EDYRKMVQKQYFAGE 136
+Y+K++ ++Y +
Sbjct: 139 TEYKKVLHEKYKTAQ 153
>pdb|1I7K|A Chain A, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
pdb|1I7K|B Chain B, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
Length = 179
Score = 174 bits (441), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 82/132 (62%), Positives = 101/132 (76%), Gaps = 1/132 (0%)
Query: 1 MSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKF 60
M+LMMSG D G+SAFPE +++F W+GTI G GT+YE L YKLSL FP YP+ P VKF
Sbjct: 40 MTLMMSG-DKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKF 98
Query: 61 ETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNN 120
T C+HPNVD GNI LDIL++KWS+ YD RTILLSIQSLLGEPN +SPLN++AA L N
Sbjct: 99 LTPCYHPNVDTQGNISLDILKEKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELWKN 158
Query: 121 KEDYRKMVQKQY 132
++K +Q+ Y
Sbjct: 159 PTAFKKYLQETY 170
>pdb|1Q34|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|B Chain B, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|C Chain C, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 163
Score = 125 bits (313), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 65/121 (53%), Positives = 79/121 (65%), Gaps = 1/121 (0%)
Query: 11 GVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVD 70
GVS P ++I TW I G + T +E ++KLSL F +YP KPP VKF + FHPNV
Sbjct: 23 GVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKPPTVKFISKMFHPNVY 82
Query: 71 QYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLN-NKEDYRKMVQ 129
G+ICLDILQ++WS YD IL SIQSLL EPNP SP NS AA L N+ +Y K VQ
Sbjct: 83 ADGSICLDILQNRWSPTYDVAAILTSIQSLLDEPNPNSPANSLAAQLYQENRREYEKRVQ 142
Query: 130 K 130
+
Sbjct: 143 Q 143
>pdb|1Z3D|A Chain A, Protein Crystal Growth Improvement Leading To The 2.5a
Crystallographic Structure Of Ubiquitin-Conjugating
Enzyme (Ubc-1) From Caenorhabditis Elegans
Length = 157
Score = 125 bits (313), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 65/121 (53%), Positives = 79/121 (65%), Gaps = 1/121 (0%)
Query: 11 GVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVD 70
GVS P ++I TW I G + T +E ++KLSL F +YP KPP VKF + FHPNV
Sbjct: 26 GVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKPPTVKFISKMFHPNVY 85
Query: 71 QYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLN-NKEDYRKMVQ 129
G+ICLDILQ++WS YD IL SIQSLL EPNP SP NS AA L N+ +Y K VQ
Sbjct: 86 ADGSICLDILQNRWSPTYDVAAILTSIQSLLDEPNPNSPANSLAAQLYQENRREYEKRVQ 145
Query: 130 K 130
+
Sbjct: 146 Q 146
>pdb|1JAS|A Chain A, Hsubc2b
pdb|2YB6|A Chain A, Native Human Rad6
pdb|2YBF|A Chain A, Complex Of Rad18 (Rad6 Binding Domain) With Rad6b
pdb|2Y4W|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Rad6b
Length = 152
Score = 121 bits (303), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 62/120 (51%), Positives = 77/120 (64%), Gaps = 1/120 (0%)
Query: 10 LGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNV 69
+GVS P +I W I G +GT +E ++KL + F +YP KPP V+F + FHPNV
Sbjct: 22 VGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNV 81
Query: 70 DQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLN-NKEDYRKMV 128
G+ICLDILQ++WS YD +IL SIQSLL EPNP SP NS AA L NK +Y K V
Sbjct: 82 YADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYEKRV 141
>pdb|2AAK|A Chain A, Ubiquitin Conjugating Enzyme From Arabidopsis Thaliana
Length = 152
Score = 117 bits (292), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 58/120 (48%), Positives = 79/120 (65%), Gaps = 1/120 (0%)
Query: 11 GVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVD 70
G+S P+ +I W I G T ++G ++KLSL+F DYP KPP V+F + FHPN+
Sbjct: 23 GISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIY 82
Query: 71 QYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLN-NKEDYRKMVQ 129
G+ICLDILQ++WS YD IL SIQSLL +PNP SP NS AA + + +K +Y + V+
Sbjct: 83 ADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMYSESKREYNRRVR 142
>pdb|3E95|A Chain A, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
pdb|3E95|B Chain B, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
Length = 151
Score = 115 bits (287), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 56/122 (45%), Positives = 76/122 (62%)
Query: 11 GVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVD 70
G+ A P E+ + I G GT YEG +YKL L P YP +PP+V+F T +HPN+D
Sbjct: 20 GIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTKIYHPNID 79
Query: 71 QYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNKEDYRKMVQK 130
+ G ICLDIL+DKWS A RT+LLSIQ+LL P P+ PL+S A ++ + V +
Sbjct: 80 KLGRICLDILKDKWSPALQIRTVLLSIQALLSSPEPDDPLDSKVAEHFKQDKNDAEHVAR 139
Query: 131 QY 132
Q+
Sbjct: 140 QW 141
>pdb|2R0J|A Chain A, Crystal Structure Of The Putative Ubiquitin Conjugating
Enzyme, Pfe1350c, From Plasmodium Falciparum
Length = 149
Score = 114 bits (286), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 56/122 (45%), Positives = 76/122 (62%)
Query: 11 GVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVD 70
G+ A P E+ + I G GT YEG +YKL L P YP +PP+V+F T +HPN+D
Sbjct: 20 GIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTKIYHPNID 79
Query: 71 QYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNKEDYRKMVQK 130
+ G ICLDIL+DKWS A RT+LLSIQ+LL P P+ PL+S A ++ + V +
Sbjct: 80 KLGRICLDILKDKWSPALQIRTVLLSIQALLSSPEPDDPLDSKVAEHFKQDKNDAEHVAR 139
Query: 131 QY 132
Q+
Sbjct: 140 QW 141
>pdb|1AYZ|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|B Chain B, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|C Chain C, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
Length = 169
Score = 113 bits (282), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 59/128 (46%), Positives = 76/128 (59%), Gaps = 1/128 (0%)
Query: 4 MMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETM 63
M GVSA P +++ W I G T YE +++L L F +YP KPP VKF +
Sbjct: 16 MKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSE 75
Query: 64 CFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL-NNKE 122
FHPNV G ICLDILQ++W+ YD +IL SIQSL +PNP SP N AA L ++K
Sbjct: 76 MFHPNVYANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFKDHKS 135
Query: 123 DYRKMVQK 130
Y K V++
Sbjct: 136 QYVKRVKE 143
>pdb|4GPR|A Chain A, Crystal Structure Of Ehubc5, A Ubiquitin Conjugating
Enzyme From Entamoeba Histolytica
Length = 151
Score = 112 bits (279), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 54/119 (45%), Positives = 75/119 (63%), Gaps = 1/119 (0%)
Query: 13 SAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQY 72
SA P G+ IF W TI G + Y+G + L + FP+DYPFK P+V F T +HPN+++
Sbjct: 25 SAGPVGDDIFHWTATITGPDDSPYQGGLFFLDVHFPVDYPFKAPRVTFMTKVYHPNINKN 84
Query: 73 GNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLN-NKEDYRKMVQK 130
G ICLDIL+D+WS A +LLSI SLL +PNP PL+ A +L NK+ + ++
Sbjct: 85 GVICLDILKDQWSPALTLSRVLLSISSLLTDPNPSDPLDPEVANVLRANKKQFEDTARE 143
>pdb|4II2|C Chain C, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1)
In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg
Length = 163
Score = 112 bits (279), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 51/98 (52%), Positives = 66/98 (67%)
Query: 13 SAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQY 72
SA P G+ +F W TI G + Y G + LS+ FP DYPFKPP+V F T +HPN++
Sbjct: 22 SAGPVGDDLFHWQATIMGPADSPYAGGVFFLSIHFPTDYPFKPPKVNFTTRIYHPNINSN 81
Query: 73 GNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPL 110
G+ICLDIL+D+WS A +LLSI SLL +PNP+ PL
Sbjct: 82 GSICLDILRDQWSPALTISKVLLSISSLLTDPNPDDPL 119
>pdb|2OXQ|A Chain A, Structure Of The Ubch5 :chip U-Box Complex
pdb|2OXQ|B Chain B, Structure Of The Ubch5 :chip U-Box Complex
Length = 152
Score = 110 bits (274), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 53/119 (44%), Positives = 77/119 (64%), Gaps = 1/119 (0%)
Query: 13 SAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQY 72
SA P G+ +F W TI G + Y+G + L++ FP DYPFKPP+V F T +HPN++
Sbjct: 27 SAGPVGDDLFHWQATIMGPSDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTKIYHPNINSN 86
Query: 73 GNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL-NNKEDYRKMVQK 130
G+ICLDIL+ +WS A +LLSI SLL +PNP+ PL A + ++KE Y ++ ++
Sbjct: 87 GSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAHIYKSDKEKYNRLARE 145
>pdb|3L1Z|A Chain A, Crystal Structure Of The U-Box Domain Of Human E4b
Ubiquitin Ligase In Complex With Ubch5c E2 Ubiquitin
Conjugating Enzyme
Length = 157
Score = 109 bits (273), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 51/120 (42%), Positives = 73/120 (60%)
Query: 13 SAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQY 72
SA P G+ +F W TI G + Y+G + L++ FP DYPFKPP+V F T +HPN++
Sbjct: 32 SAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSN 91
Query: 73 GNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNKEDYRKMVQKQY 132
G+ICLDIL+ +WS A +LLSI SLL +PNP+ PL A + D + +++
Sbjct: 92 GSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREW 151
>pdb|1X23|A Chain A, Crystal Structure Of Ubch5c
pdb|1X23|B Chain B, Crystal Structure Of Ubch5c
pdb|1X23|C Chain C, Crystal Structure Of Ubch5c
pdb|1X23|D Chain D, Crystal Structure Of Ubch5c
Length = 155
Score = 109 bits (273), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 51/120 (42%), Positives = 73/120 (60%)
Query: 13 SAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQY 72
SA P G+ +F W TI G + Y+G + L++ FP DYPFKPP+V F T +HPN++
Sbjct: 30 SAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSN 89
Query: 73 GNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNKEDYRKMVQKQY 132
G+ICLDIL+ +WS A +LLSI SLL +PNP+ PL A + D + +++
Sbjct: 90 GSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREW 149
>pdb|3RPG|A Chain A, Bmi1RING1B-Ubch5c Complex Structure
Length = 149
Score = 109 bits (273), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 51/120 (42%), Positives = 73/120 (60%)
Query: 13 SAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQY 72
SA P G+ +F W TI G + Y+G + L++ FP DYPFKPP+V F T +HPN++
Sbjct: 24 SAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSN 83
Query: 73 GNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNKEDYRKMVQKQY 132
G+ICLDIL+ +WS A +LLSI SLL +PNP+ PL A + D + +++
Sbjct: 84 GSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREW 143
>pdb|2FUH|A Chain A, Solution Structure Of The Ubch5cUB NON-Covalent Complex
Length = 146
Score = 109 bits (273), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 51/120 (42%), Positives = 73/120 (60%)
Query: 13 SAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQY 72
SA P G+ +F W TI G + Y+G + L++ FP DYPFKPP+V F T +HPN++
Sbjct: 21 SAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSN 80
Query: 73 GNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNKEDYRKMVQKQY 132
G+ICLDIL+ +WS A +LLSI SLL +PNP+ PL A + D + +++
Sbjct: 81 GSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREW 140
>pdb|3L1Y|A Chain A, Crystal Structure Of Human Ubc4 E2 Conjugating Enzyme
Length = 157
Score = 109 bits (272), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 52/119 (43%), Positives = 76/119 (63%), Gaps = 1/119 (0%)
Query: 13 SAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQY 72
SA P G+ +F W TI G + Y+G + L++ FP DYPFKPP+V F T +HPN++
Sbjct: 32 SAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSN 91
Query: 73 GNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL-NNKEDYRKMVQK 130
G+ICLDIL+ +WS A +LLSI SLL +PNP+ PL A + ++E Y ++ ++
Sbjct: 92 GSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYQTDREKYNRIARE 150
>pdb|2C4O|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 109 bits (272), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 52/119 (43%), Positives = 76/119 (63%), Gaps = 1/119 (0%)
Query: 13 SAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQY 72
SA P G+ +F W TI G + Y+G + L++ FP DYPFKPP+V F T +HPN++
Sbjct: 40 SAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSN 99
Query: 73 GNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL-NNKEDYRKMVQK 130
G+ICLDIL+ +WS A +LLSI SLL +PNP+ PL A + ++E Y ++ ++
Sbjct: 100 GSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIARE 158
>pdb|3TGD|A Chain A, Crystal Structure Of The Human Ubiquitin-Conjugating
Enzyme (E2) Ubch5b
Length = 152
Score = 109 bits (272), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 52/119 (43%), Positives = 76/119 (63%), Gaps = 1/119 (0%)
Query: 13 SAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQY 72
SA P G+ +F W TI G + Y+G + L++ FP DYPFKPP+V F T +HPN++
Sbjct: 27 SAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSN 86
Query: 73 GNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL-NNKEDYRKMVQK 130
G+ICLDIL+ +WS A +LLSI SLL +PNP+ PL A + ++E Y ++ ++
Sbjct: 87 GSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIARE 145
>pdb|2ESK|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b, Wild-Type
Length = 149
Score = 109 bits (272), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 52/119 (43%), Positives = 76/119 (63%), Gaps = 1/119 (0%)
Query: 13 SAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQY 72
SA P G+ +F W TI G + Y+G + L++ FP DYPFKPP+V F T +HPN++
Sbjct: 24 SAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSN 83
Query: 73 GNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL-NNKEDYRKMVQK 130
G+ICLDIL+ +WS A +LLSI SLL +PNP+ PL A + ++E Y ++ ++
Sbjct: 84 GSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIARE 142
>pdb|2AYV|A Chain A, Crystal Structure Of A Putative Ubiquitin-Conjugating
Enzyme E2 From Toxoplasma Gondii
Length = 166
Score = 109 bits (272), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 52/105 (49%), Positives = 68/105 (64%)
Query: 13 SAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQY 72
SA P G+ +F W TI G + + Y G + L++ FP DYPFKPP+V F T +HPN++
Sbjct: 42 SAGPVGDDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYPFKPPKVNFTTKIYHPNINSQ 101
Query: 73 GNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAAL 117
G ICLDIL+D+WS A +LLSI SLL +PNP+ PL A L
Sbjct: 102 GAICLDILKDQWSPALTISKVLLSISSLLTDPNPDDPLVPEIAHL 146
>pdb|3EB6|B Chain B, Structure Of The Ciap2 Ring Domain Bound To Ubch5b
Length = 149
Score = 109 bits (272), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 52/119 (43%), Positives = 76/119 (63%), Gaps = 1/119 (0%)
Query: 13 SAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQY 72
SA P G+ +F W TI G + Y+G + L++ FP DYPFKPP+V F T +HPN++
Sbjct: 24 SAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSN 83
Query: 73 GNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL-NNKEDYRKMVQK 130
G+ICLDIL+ +WS A +LLSI SLL +PNP+ PL A + ++E Y ++ ++
Sbjct: 84 GSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIARE 142
>pdb|1UR6|A Chain A, Nmr Based Structural Model Of The Ubch5b-Cnot4 Complex
pdb|1W4U|A Chain A, Nmr Solution Structure Of The Ubiquitin Conjugating Enzyme
Ubch5b
pdb|4A49|B Chain B, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
pdb|4A4B|C Chain C, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
pdb|4A4C|C Chain C, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 147
Score = 108 bits (271), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 52/119 (43%), Positives = 76/119 (63%), Gaps = 1/119 (0%)
Query: 13 SAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQY 72
SA P G+ +F W TI G + Y+G + L++ FP DYPFKPP+V F T +HPN++
Sbjct: 22 SAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSN 81
Query: 73 GNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL-NNKEDYRKMVQK 130
G+ICLDIL+ +WS A +LLSI SLL +PNP+ PL A + ++E Y ++ ++
Sbjct: 82 GSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIARE 140
>pdb|2C4P|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
pdb|2C4P|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
Length = 165
Score = 108 bits (271), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 52/119 (43%), Positives = 76/119 (63%), Gaps = 1/119 (0%)
Query: 13 SAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQY 72
SA P G+ +F W TI G + Y+G + L++ FP DYPFKPP++ F T +HPN++
Sbjct: 40 SAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSN 99
Query: 73 GNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL-NNKEDYRKMVQK 130
G+ICLDIL+ +WS A +LLSI SLL +PNP+ PL A + ++KE Y + ++
Sbjct: 100 GSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNRHARE 158
>pdb|3OJ4|A Chain A, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3OJ4|D Chain D, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3PTF|A Chain A, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
pdb|3PTF|B Chain B, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
Length = 153
Score = 108 bits (271), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 52/119 (43%), Positives = 76/119 (63%), Gaps = 1/119 (0%)
Query: 13 SAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQY 72
SA P G+ +F W TI G + Y+G + L++ FP DYPFKPP++ F T +HPN++
Sbjct: 28 SAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSN 87
Query: 73 GNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL-NNKEDYRKMVQK 130
G+ICLDIL+ +WS A +LLSI SLL +PNP+ PL A + ++KE Y + ++
Sbjct: 88 GSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNRHARE 146
>pdb|2YHO|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|D Chain D, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|F Chain F, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|H Chain H, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
Length = 149
Score = 108 bits (271), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 52/119 (43%), Positives = 76/119 (63%), Gaps = 1/119 (0%)
Query: 13 SAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQY 72
SA P G+ +F W TI G + Y+G + L++ FP DYPFKPP++ F T +HPN++
Sbjct: 24 SAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSN 83
Query: 73 GNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL-NNKEDYRKMVQK 130
G+ICLDIL+ +WS A +LLSI SLL +PNP+ PL A + ++KE Y + ++
Sbjct: 84 GSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNRHARE 142
>pdb|1Z2U|A Chain A, The 1.1a Crystallographic Structure Of Ubiquitin-
Conjugating Enzyme (Ubc-2) From Caenorhabditis Elegans:
Functional And Evolutionary Significance
Length = 150
Score = 107 bits (268), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 52/119 (43%), Positives = 76/119 (63%), Gaps = 1/119 (0%)
Query: 13 SAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQY 72
SA P G+ +F W TI G + Y+G + L++ FP DYPFKPP+V F T +HPN++
Sbjct: 25 SAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSN 84
Query: 73 GNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL-NNKEDYRKMVQK 130
G+ICLDIL+ +WS A +LLSI SLL +PNP+ PL A + ++E Y ++ ++
Sbjct: 85 GSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRERYNQLARE 143
>pdb|2ESQ|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ser94gly
Length = 149
Score = 107 bits (267), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 51/119 (42%), Positives = 75/119 (63%), Gaps = 1/119 (0%)
Query: 13 SAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQY 72
SA P G+ +F W TI G + Y+G + L++ FP DYPFKPP+V F T +HPN++
Sbjct: 24 SAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSN 83
Query: 73 GNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL-NNKEDYRKMVQK 130
G+ICLDIL+ +W A +LLSI SLL +PNP+ PL A + ++E Y ++ ++
Sbjct: 84 GSICLDILRSQWGPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIARE 142
>pdb|2ESP|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile88ala
Length = 149
Score = 107 bits (266), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 51/119 (42%), Positives = 75/119 (63%), Gaps = 1/119 (0%)
Query: 13 SAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQY 72
SA P G+ +F W TI G + Y+G + L++ FP DYPFKPP+V F T +HPN++
Sbjct: 24 SAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSN 83
Query: 73 GNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL-NNKEDYRKMVQK 130
G+ICLD L+ +WS A +LLSI SLL +PNP+ PL A + ++E Y ++ ++
Sbjct: 84 GSICLDALRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIARE 142
>pdb|2ESO|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile37ala
Length = 149
Score = 107 bits (266), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 51/119 (42%), Positives = 75/119 (63%), Gaps = 1/119 (0%)
Query: 13 SAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQY 72
SA P G+ +F W T G + Y+G + L++ FP DYPFKPP+V F T +HPN++
Sbjct: 24 SAGPVGDDMFHWQATAMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSN 83
Query: 73 GNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL-NNKEDYRKMVQK 130
G+ICLDIL+ +WS A +LLSI SLL +PNP+ PL A + ++E Y ++ ++
Sbjct: 84 GSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIARE 142
>pdb|1Y6L|A Chain A, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|B Chain B, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|C Chain C, Human Ubiquitin Conjugating Enzyme E2e2
Length = 149
Score = 106 bits (265), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 53/119 (44%), Positives = 75/119 (63%), Gaps = 1/119 (0%)
Query: 13 SAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQY 72
SA P+G++I+ W TI G G++YEG + L + F DYPFKPP+V F T +H N++
Sbjct: 24 SAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPFKPPKVTFRTRIYHCNINSQ 83
Query: 73 GNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPL-NSYAAALLNNKEDYRKMVQK 130
G ICLDIL+D WS A +LLSI SLL + NP PL S A + N+ ++ +M ++
Sbjct: 84 GVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQ 142
>pdb|2PWQ|A Chain A, Crystal Structure Of A Putative Ubiquitin Conjugating
Enzyme From Plasmodium Yoelii
Length = 216
Score = 106 bits (264), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 50/119 (42%), Positives = 77/119 (64%), Gaps = 3/119 (2%)
Query: 12 VSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNV-D 70
+ A + + F W+G I+G +GT YEG + L++ P DYP+ PP++KF T +HPN+
Sbjct: 43 IDAHIKDSNFFEWVGFIKGPEGTPYEGGHFTLAITIPNDYPYNPPKIKFVTKIWHPNISS 102
Query: 71 QYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNKEDYRKMVQ 129
Q G ICLD+L+++WS A RT LLSIQ+LL +P P+ P ++ A + KE++ V+
Sbjct: 103 QTGAICLDVLKNEWSPALTIRTALLSIQALLSDPQPDDPQDAEVAKMY--KENHALFVK 159
>pdb|3UGB|A Chain A, Ubch5c~ubiquitin Conjugate
Length = 147
Score = 106 bits (264), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 50/120 (41%), Positives = 72/120 (60%)
Query: 13 SAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQY 72
SA P G+ +F W TI G + Y+G + L++ FP DYPFKPP+V F T +HPN++
Sbjct: 22 SAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSN 81
Query: 73 GNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNKEDYRKMVQKQY 132
G+I LDIL+ +WS A +LLSI SLL +PNP+ PL A + D + +++
Sbjct: 82 GSISLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREW 141
>pdb|3A33|A Chain A, Ubch5b~ubiquitin Conjugate
Length = 150
Score = 105 bits (262), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 51/119 (42%), Positives = 75/119 (63%), Gaps = 1/119 (0%)
Query: 13 SAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQY 72
SA P G+ +F W TI G + Y+G + L++ FP DYPFKPP+V F T +HPN++
Sbjct: 25 SAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSN 84
Query: 73 GNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL-NNKEDYRKMVQK 130
G+I LDIL+ +WS A +LLSI SLL +PNP+ PL A + ++E Y ++ ++
Sbjct: 85 GSISLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIARE 143
>pdb|4DDG|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|J Chain J, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|K Chain K, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|L Chain L, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
Length = 399
Score = 105 bits (262), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 51/119 (42%), Positives = 75/119 (63%), Gaps = 1/119 (0%)
Query: 13 SAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQY 72
SA P G+ +F W TI G + Y+G + L++ FP DYPFKPP+V F T +HPN++
Sbjct: 24 SAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSN 83
Query: 73 GNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL-NNKEDYRKMVQK 130
G+I LDIL+ +WS A +LLSI SLL +PNP+ PL A + ++E Y ++ ++
Sbjct: 84 GSISLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIARE 142
>pdb|3JVZ|A Chain A, E2~ubiquitin-Hect
pdb|3JVZ|B Chain B, E2~ubiquitin-Hect
pdb|3JW0|A Chain A, E2~ubiquitin-Hect
pdb|3JW0|B Chain B, E2~ubiquitin-Hect
Length = 146
Score = 105 bits (262), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 51/119 (42%), Positives = 75/119 (63%), Gaps = 1/119 (0%)
Query: 13 SAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQY 72
SA P G+ +F W TI G + Y+G + L++ FP DYPFKPP+V F T +HPN++
Sbjct: 21 SAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSN 80
Query: 73 GNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL-NNKEDYRKMVQK 130
G+I LDIL+ +WS A +LLSI SLL +PNP+ PL A + ++E Y ++ ++
Sbjct: 81 GSISLDILRSQWSPALKISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIARE 139
>pdb|2C4O|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 105 bits (261), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 51/119 (42%), Positives = 75/119 (63%), Gaps = 1/119 (0%)
Query: 13 SAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQY 72
SA P G+ +F W TI G + Y+G + L++ FP DYPFKPP+V F T +HPN++
Sbjct: 40 SAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSN 99
Query: 73 GNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL-NNKEDYRKMVQK 130
G+I LDIL+ +WS A +LLSI SLL +PNP+ PL A + ++E Y ++ ++
Sbjct: 100 GSIXLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIARE 158
>pdb|1QCQ|A Chain A, Ubiquitin Conjugating Enzyme
Length = 148
Score = 105 bits (261), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 48/98 (48%), Positives = 65/98 (66%)
Query: 13 SAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQY 72
SA P G+ ++ W +I G + Y G + LS+ FP DYPFKPP++ F T +HPN++
Sbjct: 23 SAGPVGDDLYHWQASIMGPADSPYAGGVFFLSIHFPTDYPFKPPKISFTTKIYHPNINAN 82
Query: 73 GNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPL 110
GNICLDIL+D+WS A +LLSI SLL + NP+ PL
Sbjct: 83 GNICLDILKDQWSPALTLSKVLLSICSLLTDANPDDPL 120
>pdb|3BZH|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme E2
E1
Length = 194
Score = 104 bits (260), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 52/121 (42%), Positives = 75/121 (61%), Gaps = 1/121 (0%)
Query: 11 GVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVD 70
SA P+G++I+ W TI G G++YEG + L + F +YPFKPP+V F T +H N++
Sbjct: 67 NCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNIN 126
Query: 71 QYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPL-NSYAAALLNNKEDYRKMVQ 129
G ICLDIL+D WS A +LLSI SLL + NP PL S A + N+ ++ +M +
Sbjct: 127 SQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMAR 186
Query: 130 K 130
+
Sbjct: 187 Q 187
>pdb|1J7D|B Chain B, Crystal Structure Of Hmms2-Hubc13
pdb|4DHI|D Chain D, Structure Of C. Elegans Otub1 Bound To Human Ubc13
pdb|4DHJ|C Chain C, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|K Chain K, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|G Chain G, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|N Chain N, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHZ|F Chain F, The Structure Of HCEOTUB1-Ubiquitin Aldehyde-Ubc13~ub
Length = 152
Score = 103 bits (258), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 49/105 (46%), Positives = 68/105 (64%)
Query: 11 GVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVD 70
G+ A P+ + + I G + + +EG ++KL L P +YP P+V+F T +HPNVD
Sbjct: 22 GIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVD 81
Query: 71 QYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAA 115
+ G ICLDIL+DKWS A RT+LLSIQ+LL PNP+ PL + A
Sbjct: 82 KLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVA 126
>pdb|2C2V|B Chain B, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|E Chain E, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|H Chain H, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|K Chain K, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 154
Score = 103 bits (258), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 49/105 (46%), Positives = 68/105 (64%)
Query: 11 GVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVD 70
G+ A P+ + + I G + + +EG ++KL L P +YP P+V+F T +HPNVD
Sbjct: 24 GIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVD 83
Query: 71 QYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAA 115
+ G ICLDIL+DKWS A RT+LLSIQ+LL PNP+ PL + A
Sbjct: 84 KLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVA 128
>pdb|3HCT|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The P1
Space Group
pdb|3HCU|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
pdb|3HCU|D Chain D, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
Length = 155
Score = 103 bits (258), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 49/105 (46%), Positives = 68/105 (64%)
Query: 11 GVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVD 70
G+ A P+ + + I G + + +EG ++KL L P +YP P+V+F T +HPNVD
Sbjct: 25 GIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVD 84
Query: 71 QYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAA 115
+ G ICLDIL+DKWS A RT+LLSIQ+LL PNP+ PL + A
Sbjct: 85 KLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVA 129
>pdb|4EPO|B Chain B, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|F Chain F, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|J Chain J, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 155
Score = 103 bits (258), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 49/105 (46%), Positives = 68/105 (64%)
Query: 11 GVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVD 70
G+ A P+ + + I G + + +EG ++KL L P +YP P+V+F T +HPNVD
Sbjct: 27 GIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVD 86
Query: 71 QYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAA 115
+ G ICLDIL+DKWS A RT+LLSIQ+LL PNP+ PL + A
Sbjct: 87 KLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVA 131
>pdb|3VON|C Chain C, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|E Chain E, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|G Chain G, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|J Chain J, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|L Chain L, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|N Chain N, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Q Chain Q, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|S Chain S, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|U Chain U, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|X Chain X, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Z Chain Z, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|BB Chain b, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|EE Chain e, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|GG Chain g, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|II Chain i, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|LL Chain l, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|NN Chain n, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|PP Chain p, Crystalstructure Of The Ubiquitin Protease
Length = 148
Score = 103 bits (258), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 49/105 (46%), Positives = 68/105 (64%)
Query: 11 GVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVD 70
G+ A P+ + + I G + + +EG ++KL L P +YP P+V+F T +HPNVD
Sbjct: 20 GIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVD 79
Query: 71 QYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAA 115
+ G ICLDIL+DKWS A RT+LLSIQ+LL PNP+ PL + A
Sbjct: 80 KLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVA 124
>pdb|4AP4|B Chain B, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
pdb|4AP4|E Chain E, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 153
Score = 102 bits (255), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 50/118 (42%), Positives = 74/118 (62%), Gaps = 1/118 (0%)
Query: 14 AFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYG 73
A P G+ +F W TI G + Y+G + L++ FP DYPFKPP++ F T +HPN++ G
Sbjct: 29 AGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNG 88
Query: 74 NICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL-NNKEDYRKMVQK 130
+I LDIL+ +WS A +LLSI SLL +PNP+ PL A + ++KE Y + ++
Sbjct: 89 SIKLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNRHARE 146
>pdb|1JBB|A Chain A, Ubiquitin Conjugating Enzyme, Ubc13
pdb|1JBB|B Chain B, Ubiquitin Conjugating Enzyme, Ubc13
Length = 153
Score = 102 bits (254), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 49/113 (43%), Positives = 72/113 (63%), Gaps = 1/113 (0%)
Query: 11 GVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVD 70
G++A P +++ + TIEG + + YE ++L L P DYP + P+V+F T +HPN+D
Sbjct: 22 GITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNID 81
Query: 71 QYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPL-NSYAAALLNNKE 122
+ G ICLD+L+ WS A RT+LLSIQ+LL PNP PL N A + N++
Sbjct: 82 RLGRICLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIKNEQ 134
>pdb|1JAT|A Chain A, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX
Length = 155
Score = 102 bits (254), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 49/113 (43%), Positives = 72/113 (63%), Gaps = 1/113 (0%)
Query: 11 GVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVD 70
G++A P +++ + TIEG + + YE ++L L P DYP + P+V+F T +HPN+D
Sbjct: 24 GITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNID 83
Query: 71 QYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPL-NSYAAALLNNKE 122
+ G ICLD+L+ WS A RT+LLSIQ+LL PNP PL N A + N++
Sbjct: 84 RLGRICLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIKNEQ 136
>pdb|2F4Z|A Chain A, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
pdb|2F4Z|B Chain B, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
Length = 193
Score = 101 bits (252), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 51/109 (46%), Positives = 67/109 (61%), Gaps = 1/109 (0%)
Query: 11 GVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNV- 69
GVSA G I W G I G GT YEG + L + P DYP+ PP++KF T +HPN+
Sbjct: 64 GVSAQIVGGDIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPKMKFVTKIWHPNIS 123
Query: 70 DQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL 118
Q G ICLDIL+ +WS A RT LLSIQ++L +P P P ++ A ++
Sbjct: 124 SQTGAICLDILKHEWSPALTIRTALLSIQAMLADPVPTDPQDAEVAKMM 172
>pdb|4AUQ|A Chain A, Structure Of Birc7-Ubch5b-Ub Complex.
pdb|4AUQ|D Chain D, Structure Of Birc7-Ubch5b-Ub Complex
Length = 147
Score = 100 bits (250), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 49/118 (41%), Positives = 73/118 (61%), Gaps = 1/118 (0%)
Query: 14 AFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYG 73
A P G+ +F W TI G + Y+G + L++ FP DYPFKPP+V F T +HP ++ G
Sbjct: 23 AGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPAINSNG 82
Query: 74 NICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL-NNKEDYRKMVQK 130
+I LDIL+ +WS A +LLSI SLL +PNP+ PL A + ++E Y ++ ++
Sbjct: 83 SISLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIARE 140
>pdb|2GMI|A Chain A, Mms2UBC13~UBIQUITIN
Length = 152
Score = 99.4 bits (246), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 48/113 (42%), Positives = 71/113 (62%), Gaps = 1/113 (0%)
Query: 11 GVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVD 70
G++A P +++ + TIEG + + YE ++L L P DYP + P+V+F T +HPN+D
Sbjct: 22 GITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNID 81
Query: 71 QYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPL-NSYAAALLNNKE 122
+ G I LD+L+ WS A RT+LLSIQ+LL PNP PL N A + N++
Sbjct: 82 RLGRISLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIKNEQ 134
>pdb|4FH1|A Chain A, S. Cerevisiae Ubc13-N79a
Length = 153
Score = 96.3 bits (238), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 47/113 (41%), Positives = 70/113 (61%), Gaps = 1/113 (0%)
Query: 11 GVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVD 70
G++A P +++ + TIEG + + YE ++L L P DYP + P+V+F T +HP +D
Sbjct: 22 GITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPAID 81
Query: 71 QYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPL-NSYAAALLNNKE 122
+ G I LD+L+ WS A RT+LLSIQ+LL PNP PL N A + N++
Sbjct: 82 RLGRISLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIKNEQ 134
>pdb|1ZDN|A Chain A, Ubiquitin-Conjugating Enzyme E2s
pdb|1ZDN|B Chain B, Ubiquitin-Conjugating Enzyme E2s
Length = 158
Score = 91.7 bits (226), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 48/115 (41%), Positives = 66/115 (57%), Gaps = 1/115 (0%)
Query: 11 GVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVD 70
G+ FP E + TIEG +GT Y G +++ L D+P PP+ F T FHPNV
Sbjct: 32 GIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHPNVG 91
Query: 71 QYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAA-LLNNKEDY 124
G IC+++L+ W++ R +LL+I+ LL PNPES LN A LL N E+Y
Sbjct: 92 ANGEICVNVLKRDWTAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEY 146
>pdb|1YRV|A Chain A, Novel Ubiquitin-Conjugating Enzyme
Length = 169
Score = 90.5 bits (223), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 77/123 (62%), Gaps = 4/123 (3%)
Query: 11 GVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVD 70
G++A P E + W IEG + ++++GL ++L++ F +Y + PP VKF T+ FHPNVD
Sbjct: 42 GITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPFHPNVD 101
Query: 71 QY-GNICLDILQ--DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNKED-YRK 126
+ G C+D L +KW++ Y +ILL++Q +L P E+P+N AA +L E YR
Sbjct: 102 PHTGQPCIDFLDNPEKWNTNYTLSSILLALQVMLSNPVLENPVNLEAARILVKDESLYRT 161
Query: 127 MVQ 129
+++
Sbjct: 162 ILR 164
>pdb|1PZV|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 164
Score = 90.1 bits (222), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 48/127 (37%), Positives = 71/127 (55%), Gaps = 15/127 (11%)
Query: 17 EGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNIC 76
+ I+ W + G T+YEG +K L FP DYP KPP++KF + +HPN+D+ GN+C
Sbjct: 29 DDNDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKPPKMKFISEIWHPNIDKEGNVC 88
Query: 77 LDILQD-------------KWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNKED 123
+ IL D +W + TILLS+ S+L +PN ESP N AA + +E+
Sbjct: 89 ISILHDPGDDKWGYERPEERWLPVHTVETILLSVISMLTDPNFESPANVDAAKM--QREN 146
Query: 124 YRKMVQK 130
Y + +K
Sbjct: 147 YAEFKKK 153
>pdb|2GRR|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127s
Length = 161
Score = 89.7 bits (221), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 51/120 (42%), Positives = 68/120 (56%), Gaps = 4/120 (3%)
Query: 16 PEGE-SIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGN 74
P+G ++ W I G KGT +EG +KL + F DYP PP+ KFE FHPNV G
Sbjct: 35 PDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGT 94
Query: 75 ICLDILQD--KWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAAL-LNNKEDYRKMVQKQ 131
+CL IL++ W A + ILL IQ LL EPN +SP + A + N+ +Y K V+ Q
Sbjct: 95 VCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQSPAQAEAYTIYCQNRVEYEKRVRAQ 154
>pdb|2GRP|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-Y87a
Length = 161
Score = 89.4 bits (220), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 50/120 (41%), Positives = 67/120 (55%), Gaps = 4/120 (3%)
Query: 16 PEGE-SIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGN 74
P+G ++ W I G KGT +EG +KL + F DYP PP+ KFE FHPNV G
Sbjct: 35 PDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVAPSGT 94
Query: 75 ICLDILQD--KWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAAL-LNNKEDYRKMVQKQ 131
+CL IL++ W A + ILL IQ LL EPN + P + A + N+ +Y K V+ Q
Sbjct: 95 VCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQ 154
>pdb|2GRQ|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127a
Length = 161
Score = 89.0 bits (219), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 50/120 (41%), Positives = 68/120 (56%), Gaps = 4/120 (3%)
Query: 16 PEGE-SIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGN 74
P+G ++ W I G KGT +EG +KL + F DYP PP+ KFE FHPNV G
Sbjct: 35 PDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGT 94
Query: 75 ICLDILQD--KWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAAL-LNNKEDYRKMVQKQ 131
+CL IL++ W A + ILL IQ LL EPN ++P + A + N+ +Y K V+ Q
Sbjct: 95 VCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQAPAQAEAYTIYCQNRVEYEKRVRAQ 154
>pdb|1FXT|A Chain A, Structure Of A Conjugating Enzyme-Ubiquitin Thiolester
Complex
pdb|1FZY|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
pdb|1FZY|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
Length = 149
Score = 88.6 bits (218), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 41/103 (39%), Positives = 64/103 (62%), Gaps = 2/103 (1%)
Query: 26 GTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQY-GNICLDILQDKW 84
GT G GT YEG + + + P++YPFKPP+++F+T +HPN+ G ICLDIL++ W
Sbjct: 36 GTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVTGAICLDILKNAW 95
Query: 85 SSAYDCRTILLSIQSLLGEPNPESPLNS-YAAALLNNKEDYRK 126
S ++ L+S+Q+LL P P P ++ A L ++E + K
Sbjct: 96 SPVITLKSALISLQALLQSPEPNDPQDAEVAQHYLRDRESFNK 138
>pdb|3A4S|A Chain A, The Crystal Structure Of The Sld2:ubc9 Complex
pdb|3A4S|B Chain B, The Crystal Structure Of The Sld2:ubc9 Complex
Length = 163
Score = 88.2 bits (217), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/120 (41%), Positives = 67/120 (55%), Gaps = 4/120 (3%)
Query: 16 PEGE-SIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGN 74
P+G ++ W I G KGT +EG +KL + F DYP PP+ KFE FHPNV G
Sbjct: 37 PDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGT 96
Query: 75 ICLDILQD--KWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAAL-LNNKEDYRKMVQKQ 131
+CL IL++ W A + ILL IQ LL EPN + P + A + N+ +Y K V+ Q
Sbjct: 97 VCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQ 156
>pdb|1TTE|A Chain A, The Structure Of A Class Ii Ubiquitin-Conjugating Enzyme,
Ubc1
Length = 215
Score = 88.2 bits (217), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 41/103 (39%), Positives = 64/103 (62%), Gaps = 2/103 (1%)
Query: 26 GTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQY-GNICLDILQDKW 84
GT G GT YEG + + + P++YPFKPP+++F+T +HPN+ G ICLDIL++ W
Sbjct: 37 GTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVTGAICLDILRNAW 96
Query: 85 SSAYDCRTILLSIQSLLGEPNPESPLNSYAAA-LLNNKEDYRK 126
S ++ L+S+Q+LL P P P ++ A L ++E + K
Sbjct: 97 SPVITLKSALISLQALLQSPEPNDPQDAEVAQHYLRDRESFNK 139
>pdb|1KPS|A Chain A, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
pdb|1KPS|C Chain C, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
Length = 159
Score = 88.2 bits (217), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/120 (41%), Positives = 67/120 (55%), Gaps = 4/120 (3%)
Query: 16 PEGE-SIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGN 74
P+G ++ W I G KGT +EG +KL + F DYP PP+ KFE FHPNV G
Sbjct: 33 PDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGT 92
Query: 75 ICLDILQD--KWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAAL-LNNKEDYRKMVQKQ 131
+CL IL++ W A + ILL IQ LL EPN + P + A + N+ +Y K V+ Q
Sbjct: 93 VCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQ 152
>pdb|2O25|C Chain C, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|D Chain D, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|1A3S|A Chain A, Human Ubc9
Length = 160
Score = 88.2 bits (217), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/120 (41%), Positives = 67/120 (55%), Gaps = 4/120 (3%)
Query: 16 PEGE-SIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGN 74
P+G ++ W I G KGT +EG +KL + F DYP PP+ KFE FHPNV G
Sbjct: 34 PDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGT 93
Query: 75 ICLDILQD--KWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAAL-LNNKEDYRKMVQKQ 131
+CL IL++ W A + ILL IQ LL EPN + P + A + N+ +Y K V+ Q
Sbjct: 94 VCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQ 153
>pdb|3RZ3|A Chain A, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|B Chain B, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|C Chain C, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|D Chain D, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
Length = 183
Score = 88.2 bits (217), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 77/148 (52%), Gaps = 21/148 (14%)
Query: 12 VSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQ 71
V+ EG+ ++ W I G T YEG +K L+FP+DYP+ PP +F T +HPN+ +
Sbjct: 29 VTLVDEGD-LYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIYE 87
Query: 72 YGNICLDILQ-------------DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL 118
G++C+ IL ++W+ + RTILLS+ SLL EPN SP N A+ +
Sbjct: 88 TGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMY 147
Query: 119 N-------NKEDYRKMVQKQYFAGEFES 139
+Y +++KQ + ++
Sbjct: 148 RKWKESKGKDREYTDIIRKQVLGTKVDA 175
>pdb|2GRN|A Chain A, Crystal Structure Of Human Rangap1-Ubc9
pdb|2PE6|A Chain A, Non-Covalent Complex Between Human Sumo-1 And Human Ubc9
Length = 161
Score = 88.2 bits (217), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/120 (41%), Positives = 67/120 (55%), Gaps = 4/120 (3%)
Query: 16 PEGE-SIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGN 74
P+G ++ W I G KGT +EG +KL + F DYP PP+ KFE FHPNV G
Sbjct: 35 PDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGT 94
Query: 75 ICLDILQD--KWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAAL-LNNKEDYRKMVQKQ 131
+CL IL++ W A + ILL IQ LL EPN + P + A + N+ +Y K V+ Q
Sbjct: 95 VCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQ 154
>pdb|1Z5S|A Chain A, Crystal Structure Of A Complex Between Ubc9, Sumo-1,
Rangap1 And Nup358RANBP2
pdb|2PX9|B Chain B, The Intrinsic Affinity Between E2 And The Cys Domain Of E1
In Ubiquitin-Like Modifications
pdb|2VRR|A Chain A, Structure Of Sumo Modified Ubc9
pdb|2XWU|A Chain A, Crystal Structure Of Importin 13 - Ubc9 Complex
pdb|3UIN|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2
Length = 158
Score = 88.2 bits (217), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/120 (41%), Positives = 67/120 (55%), Gaps = 4/120 (3%)
Query: 16 PEGE-SIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGN 74
P+G ++ W I G KGT +EG +KL + F DYP PP+ KFE FHPNV G
Sbjct: 32 PDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGT 91
Query: 75 ICLDILQD--KWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAAL-LNNKEDYRKMVQKQ 131
+CL IL++ W A + ILL IQ LL EPN + P + A + N+ +Y K V+ Q
Sbjct: 92 VCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQ 151
>pdb|1U9A|A Chain A, Human Ubiquitin-Conjugating Enzyme Ubc9
pdb|1U9B|A Chain A, MurineHUMAN UBIQUITIN-Conjugating Enzyme Ubc9
Length = 160
Score = 88.2 bits (217), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/120 (41%), Positives = 67/120 (55%), Gaps = 4/120 (3%)
Query: 16 PEGE-SIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGN 74
P+G ++ W I G KGT +EG +KL + F DYP PP+ KFE FHPNV G
Sbjct: 34 PDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGT 93
Query: 75 ICLDILQD--KWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAAL-LNNKEDYRKMVQKQ 131
+CL IL++ W A + ILL IQ LL EPN + P + A + N+ +Y K V+ Q
Sbjct: 94 VCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQ 153
>pdb|2OB4|A Chain A, Human Ubiquitin-Conjugating Enzyme Cdc34
Length = 180
Score = 87.8 bits (216), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 77/148 (52%), Gaps = 21/148 (14%)
Query: 12 VSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQ 71
V+ EG+ ++ W I G T YEG +K L+FP+DYP+ PP +F T +HPN+ +
Sbjct: 26 VTLVDEGD-LYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIYE 84
Query: 72 YGNICLDILQ-------------DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL 118
G++C+ IL ++W+ + RTILLS+ SLL EPN SP N A+ +
Sbjct: 85 TGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMY 144
Query: 119 N-------NKEDYRKMVQKQYFAGEFES 139
+Y +++KQ + ++
Sbjct: 145 RKWKESKGKDREYTDIIRKQVLGTKVDA 172
>pdb|1YH2|A Chain A, Ubiquitin-Conjugating Enzyme Hspc150
Length = 169
Score = 86.7 bits (213), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 41/104 (39%), Positives = 61/104 (58%), Gaps = 4/104 (3%)
Query: 11 GVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVD 70
G++ + + + + I GG T YE +KL + P YPF+PPQ++F T +HPN+D
Sbjct: 23 GITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPNID 82
Query: 71 QYGNICLDIL----QDKWSSAYDCRTILLSIQSLLGEPNPESPL 110
G ICLD+L + W + + T+L SIQ L+ EPNP+ PL
Sbjct: 83 SAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPNPDDPL 126
>pdb|2GRO|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-N85q
Length = 161
Score = 85.9 bits (211), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 49/120 (40%), Positives = 66/120 (55%), Gaps = 4/120 (3%)
Query: 16 PEGE-SIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGN 74
P+G ++ W I G KGT +EG +KL + F DYP PP+ KFE FHP V G
Sbjct: 35 PDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPQVYPSGT 94
Query: 75 ICLDILQD--KWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAAL-LNNKEDYRKMVQKQ 131
+CL IL++ W A + ILL IQ LL EPN + P + A + N+ +Y K V+ Q
Sbjct: 95 VCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQ 154
>pdb|2AWF|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G1
Length = 172
Score = 85.5 bits (210), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 63/109 (57%), Gaps = 13/109 (11%)
Query: 20 SIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDI 79
++ W I G T+YEG +K L FP DYP +PP++KF T +HPNVD+ G++C+ I
Sbjct: 46 DLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNGDVCISI 105
Query: 80 L-------------QDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAA 115
L +++W + TI++S+ S+L +PN +SP N AA
Sbjct: 106 LHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPANVDAA 154
>pdb|2UYZ|A Chain A, Non-Covalent Complex Between Ubc9 And Sumo1
Length = 158
Score = 84.3 bits (207), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/120 (40%), Positives = 66/120 (55%), Gaps = 4/120 (3%)
Query: 16 PEGE-SIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGN 74
P+G ++ W I G KGT +EG +KL + F DYP PP+ KFE FHPNV G
Sbjct: 32 PDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGT 91
Query: 75 ICLDILQD--KWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAAL-LNNKEDYRKMVQKQ 131
+ L IL++ W A + ILL IQ LL EPN + P + A + N+ +Y K V+ Q
Sbjct: 92 VSLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQ 151
>pdb|2Z5D|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 H
pdb|2Z5D|B Chain B, Human Ubiquitin-Conjugating Enzyme E2 H
Length = 179
Score = 84.3 bits (207), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 45/112 (40%), Positives = 67/112 (59%), Gaps = 5/112 (4%)
Query: 30 GGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQY-GNICLDILQDKWSSAY 88
G +GT YEG +K+ + P YPFK P + F FHPN+D+ G +CLD++ W++ Y
Sbjct: 59 GPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDEASGTVCLDVINQTWTALY 118
Query: 89 DCRTILLS-IQSLLGEPNPESPLNSYAAAL-LNNKEDYRKMVQK--QYFAGE 136
D I S + LL PNP PLN AAA+ L+ E+Y++ +++ Q +A E
Sbjct: 119 DLTNIFESFLPQLLAYPNPIDPLNGDAAAMYLHRPEEYKQKIKEYIQKYATE 170
>pdb|3RCZ|B Chain B, Rad60 Sld2 Ubc9 Complex
Length = 163
Score = 84.0 bits (206), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 46/117 (39%), Positives = 64/117 (54%), Gaps = 3/117 (2%)
Query: 18 GESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICL 77
G + W I G T +EG YKL++ FP +YP +PP+ +F FHPNV G +CL
Sbjct: 41 GLDLMNWKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTPPLFHPNVYPSGTVCL 100
Query: 78 DILQDK--WSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL-NNKEDYRKMVQKQ 131
IL ++ W A + ILL IQ LL +PN SP + A + +K +Y K V+ Q
Sbjct: 101 SILNEEEGWKPAITIKQILLGIQDLLDDPNIASPAQTEAYTMFKKDKVEYEKRVRAQ 157
>pdb|3UIO|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
pdb|3UIP|A Chain A, Complex Between Human Rangap1-Sumo1, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
Length = 158
Score = 84.0 bits (206), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/120 (40%), Positives = 66/120 (55%), Gaps = 4/120 (3%)
Query: 16 PEGE-SIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGN 74
P+G ++ W I G KGT +EG +KL + F DYP PP+ KFE FHPNV G
Sbjct: 32 PDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGT 91
Query: 75 ICLDILQD--KWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAAL-LNNKEDYRKMVQKQ 131
+ L IL++ W A + ILL IQ LL EPN + P + A + N+ +Y K V+ Q
Sbjct: 92 VXLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYXQNRVEYEKRVRAQ 151
>pdb|1Y8X|A Chain A, Structural Basis For Recruitment Of Ubc12 By An E2-Binding
Domain In Nedd8's E1
Length = 160
Score = 82.4 bits (202), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 40/102 (39%), Positives = 58/102 (56%), Gaps = 1/102 (0%)
Query: 35 MYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTIL 94
Y+ + S + YP PP+VK ET +HPN+D GN+CL+IL++ W +I+
Sbjct: 47 FYKSGKFVFSFKVGQGYPHDPPKVKCETXVYHPNIDLEGNVCLNILREDWKPVLTINSII 106
Query: 95 LSIQSLLGEPNPESPLNSYAAALL-NNKEDYRKMVQKQYFAG 135
+Q L EPNPE PLN AA +L NN+ + + VQ+ G
Sbjct: 107 YGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSXRGG 148
>pdb|3ONG|B Chain B, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
pdb|3ONG|D Chain D, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
Length = 159
Score = 82.4 bits (202), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 47/115 (40%), Positives = 62/115 (53%), Gaps = 6/115 (5%)
Query: 24 WIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQD- 82
W I G +GT + G Y +++ +P +YP KPP+VKF +HPNV G ICL IL +
Sbjct: 43 WEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAGFYHPNVYPSGTICLSILNED 102
Query: 83 -KWSSAYDCRTILLSIQSLLGEPNPESPLNSYA-AALLNNKEDYRKMV---QKQY 132
W A + I+L +Q LL PNP SP A + NK +Y K V KQY
Sbjct: 103 QDWRPAITLKQIVLGVQDLLDSPNPNSPAQEPAWRSFSRNKAEYDKKVLLQAKQY 157
>pdb|2GJD|A Chain A, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|B Chain B, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|C Chain C, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|D Chain D, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2EKE|A Chain A, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
pdb|2EKE|B Chain B, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
Length = 157
Score = 82.0 bits (201), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 47/115 (40%), Positives = 62/115 (53%), Gaps = 6/115 (5%)
Query: 24 WIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQD- 82
W I G +GT + G Y +++ +P +YP KPP+VKF +HPNV G ICL IL +
Sbjct: 41 WEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAGFYHPNVYPSGTICLSILNED 100
Query: 83 -KWSSAYDCRTILLSIQSLLGEPNPESPLNSYA-AALLNNKEDYRKMV---QKQY 132
W A + I+L +Q LL PNP SP A + NK +Y K V KQY
Sbjct: 101 QDWRPAITLKQIVLGVQDLLDSPNPNSPAQEPAWRSFSRNKAEYDKKVLLQAKQY 155
>pdb|2NVU|C Chain C, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A
Trapped Ubiquitin-Like Protein Activation Complex
Length = 180
Score = 82.0 bits (201), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 58/101 (57%), Gaps = 1/101 (0%)
Query: 36 YEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILL 95
Y+ + S + YP PP+VK ETM +HPN+D GN+ L+IL++ W +I+
Sbjct: 68 YKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVALNILREDWKPVLTINSIIY 127
Query: 96 SIQSLLGEPNPESPLNSYAAALL-NNKEDYRKMVQKQYFAG 135
+Q L EPNPE PLN AA +L NN+ + + VQ+ G
Sbjct: 128 GLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRGG 168
>pdb|3FSH|A Chain A, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78
pdb|3FSH|B Chain B, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78
Length = 168
Score = 78.2 bits (191), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 69/135 (51%), Gaps = 15/135 (11%)
Query: 11 GVSAFP-EGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNV 69
G+ A P E+ F W I G + T +E + L FPLDYP PP+++F FHPN+
Sbjct: 26 GIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNI 85
Query: 70 DQYGNICLDILQ-------------DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAA 116
G +C+ IL ++WS ILLS+ S+L EPN ES N A+
Sbjct: 86 YPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASK 145
Query: 117 LL-NNKEDYRKMVQK 130
+ +++E + K+ ++
Sbjct: 146 MWRDDREQFYKIAKQ 160
>pdb|2KLY|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Ube2g2
Length = 167
Score = 78.2 bits (191), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 69/135 (51%), Gaps = 15/135 (11%)
Query: 11 GVSAFP-EGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNV 69
G+ A P E+ F W I G + T +E + L FPLDYP PP+++F FHPN+
Sbjct: 25 GIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNI 84
Query: 70 DQYGNICLDILQ-------------DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAA 116
G +C+ IL ++WS ILLS+ S+L EPN ES N A+
Sbjct: 85 YPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASK 144
Query: 117 LL-NNKEDYRKMVQK 130
+ +++E + K+ ++
Sbjct: 145 MWRDDREQFYKIAKQ 159
>pdb|2CYX|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|B Chain B, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|C Chain C, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
Length = 170
Score = 78.2 bits (191), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 69/135 (51%), Gaps = 15/135 (11%)
Query: 11 GVSAFP-EGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNV 69
G+ A P E+ F W I G + T +E + L FPLDYP PP+++F FHPN+
Sbjct: 28 GIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNI 87
Query: 70 DQYGNICLDILQ-------------DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAA 116
G +C+ IL ++WS ILLS+ S+L EPN ES N A+
Sbjct: 88 YPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASK 147
Query: 117 LL-NNKEDYRKMVQK 130
+ +++E + K+ ++
Sbjct: 148 MWRDDREQFYKIAKQ 162
>pdb|3H8K|A Chain A, Crystal Structure Of Ube2g2 Complxed With The G2br Domain
Of Gp78 At 1.8-A Resolution
Length = 164
Score = 77.8 bits (190), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 69/135 (51%), Gaps = 15/135 (11%)
Query: 11 GVSAFP-EGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNV 69
G+ A P E+ F W I G + T +E + L FPLDYP PP+++F FHPN+
Sbjct: 22 GIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNI 81
Query: 70 DQYGNICLDILQ-------------DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAA 116
G +C+ IL ++WS ILLS+ S+L EPN ES N A+
Sbjct: 82 YPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASK 141
Query: 117 LL-NNKEDYRKMVQK 130
+ +++E + K+ ++
Sbjct: 142 MWRDDREQFYKIAKQ 156
>pdb|3K9P|A Chain A, The Crystal Structure Of E2-25k And Ubiquitin Complex
Length = 217
Score = 77.8 bits (190), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/91 (46%), Positives = 59/91 (64%), Gaps = 1/91 (1%)
Query: 26 GTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQY-GNICLDILQDKW 84
G I G T YEG Y+L ++ P YPF PP+V+F T +HPN+ G ICLDIL+D+W
Sbjct: 58 GEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQW 117
Query: 85 SSAYDCRTILLSIQSLLGEPNPESPLNSYAA 115
++A RT+LLS+Q+LL P+ P ++ A
Sbjct: 118 AAAMTLRTVLLSLQALLAAAEPDDPQDAVVA 148
>pdb|3E46|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
pdb|3F92|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
Crystallized At Ph 8.5
Length = 253
Score = 77.8 bits (190), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/91 (46%), Positives = 59/91 (64%), Gaps = 1/91 (1%)
Query: 26 GTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQY-GNICLDILQDKW 84
G I G T YEG Y+L ++ P YPF PP+V+F T +HPN+ G ICLDIL+D+W
Sbjct: 94 GEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQW 153
Query: 85 SSAYDCRTILLSIQSLLGEPNPESPLNSYAA 115
++A RT+LLS+Q+LL P+ P ++ A
Sbjct: 154 AAAMTLRTVLLSLQALLAAAEPDDPQDAVVA 184
>pdb|2BEP|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2-25k
pdb|2BF8|A Chain A, Crystal Structure Of Sumo Modified Ubiquitin Conjugating
Enzyme E2-25k
Length = 159
Score = 77.8 bits (190), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/91 (46%), Positives = 59/91 (64%), Gaps = 1/91 (1%)
Query: 26 GTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQY-GNICLDILQDKW 84
G I G T YEG Y+L ++ P YPF PP+V+F T +HPN+ G ICLDIL+D+W
Sbjct: 45 GEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQW 104
Query: 85 SSAYDCRTILLSIQSLLGEPNPESPLNSYAA 115
++A RT+LLS+Q+LL P+ P ++ A
Sbjct: 105 AAAMTLRTVLLSLQALLAAAEPDDPQDAVVA 135
>pdb|3K9O|A Chain A, The Crystal Structure Of E2-25k And Ubb+1 Complex
Length = 201
Score = 77.8 bits (190), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/91 (46%), Positives = 59/91 (64%), Gaps = 1/91 (1%)
Query: 26 GTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQY-GNICLDILQDKW 84
G I G T YEG Y+L ++ P YPF PP+V+F T +HPN+ G ICLDIL+D+W
Sbjct: 42 GEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQW 101
Query: 85 SSAYDCRTILLSIQSLLGEPNPESPLNSYAA 115
++A RT+LLS+Q+LL P+ P ++ A
Sbjct: 102 AAAMTLRTVLLSLQALLAAAEPDDPQDAVVA 132
>pdb|1YLA|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|1YLA|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|2O25|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
Length = 202
Score = 77.8 bits (190), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/91 (46%), Positives = 59/91 (64%), Gaps = 1/91 (1%)
Query: 26 GTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQY-GNICLDILQDKW 84
G I G T YEG Y+L ++ P YPF PP+V+F T +HPN+ G ICLDIL+D+W
Sbjct: 43 GEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQW 102
Query: 85 SSAYDCRTILLSIQSLLGEPNPESPLNSYAA 115
++A RT+LLS+Q+LL P+ P ++ A
Sbjct: 103 AAAMTLRTVLLSLQALLAAAEPDDPQDAVVA 133
>pdb|2ONU|A Chain A, Plasmodium Falciparum Ubiquitin Conjugating Enzyme
Pf10_0330, Putative Homologue Of Human Ube2h
Length = 152
Score = 77.0 bits (188), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 69/132 (52%), Gaps = 6/132 (4%)
Query: 3 LMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFET 62
L+M+G DL ++ S + G GT YEG +K+ + P DYPF P + F
Sbjct: 14 LIMAGYDLELN----NGSTQDFDVMFHGPNGTAYEGGIWKVHVTLPDDYPFASPSIGFMN 69
Query: 63 MCFHPNVDQY-GNICLDILQDKWSSAYDCRTIL-LSIQSLLGEPNPESPLNSYAAALLNN 120
HPNVD+ G++CLD++ W+ Y + + + LL PNP PLNS AA+LL
Sbjct: 70 KLLHPNVDEASGSVCLDVINQTWTPLYSLVNVFEVFLPQLLTYPNPSDPLNSDAASLLMK 129
Query: 121 KEDYRKMVQKQY 132
++ + K+Y
Sbjct: 130 DKNIYEEKVKEY 141
>pdb|2UCZ|A Chain A, Ubiquitin Conjugating Enzyme (Ubc7) From Saccharomyces
Cerevisiae
Length = 165
Score = 77.0 bits (188), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 66/134 (49%), Gaps = 15/134 (11%)
Query: 11 GVSAFPEGES-IFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNV 69
G+ A P+ E+ IF W I+G T Y + L FP DYP PP++ F HPN+
Sbjct: 23 GIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSILHPNI 82
Query: 70 DQYGNICLDIL-------------QDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAA 116
G +C+ IL +++WS ILLS+ S+L EPN ES N A
Sbjct: 83 YPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSVMSMLSEPNIESGANIDACI 142
Query: 117 L-LNNKEDYRKMVQ 129
L +N+ ++ + V+
Sbjct: 143 LWRDNRPEFERQVK 156
>pdb|3SQV|C Chain C, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SQV|D Chain D, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SY2|C Chain C, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
pdb|3SY2|D Chain D, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
Length = 156
Score = 76.6 bits (187), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 57/94 (60%), Gaps = 2/94 (2%)
Query: 20 SIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDI 79
++ TW G I Y+ ++++ + FP +YPFKPP++ F+T +HPN+D+ G +CL +
Sbjct: 33 NLLTWQGLIVPD-NPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPV 91
Query: 80 LQ-DKWSSAYDCRTILLSIQSLLGEPNPESPLNS 112
+ + W A ++ S+ +L+ +P PE PL +
Sbjct: 92 ISAENWKPATKTDQVIQSLIALVNDPQPEHPLRA 125
>pdb|1C4Z|D Chain D, Structure Of E6ap: Insights Into Ubiquitination Pathway
pdb|1FBV|C Chain C, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 154
Score = 76.6 bits (187), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 57/94 (60%), Gaps = 2/94 (2%)
Query: 20 SIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDI 79
++ TW G I Y+ ++++ + FP +YPFKPP++ F+T +HPN+D+ G +CL +
Sbjct: 31 NLLTWQGLIVPD-NPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPV 89
Query: 80 LQ-DKWSSAYDCRTILLSIQSLLGEPNPESPLNS 112
+ + W A ++ S+ +L+ +P PE PL +
Sbjct: 90 ISAENWKPATKTDQVIQSLIALVNDPQPEHPLRA 123
>pdb|1YF9|A Chain A, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|B Chain B, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|C Chain C, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
Length = 171
Score = 75.5 bits (184), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 56/98 (57%), Gaps = 3/98 (3%)
Query: 24 WIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQY-GNICLDILQD 82
W+ +G +GT YE ++ L ++ P DYPFK P + F HPNVD+ G++CLD++
Sbjct: 41 WV-EFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNVDERSGSVCLDVINQ 99
Query: 83 KWSSAYDCRTIL-LSIQSLLGEPNPESPLNSYAAALLN 119
W+ Y I + + LL PNP PLN AA LL+
Sbjct: 100 TWTPMYQLENIFDVFLPQLLRYPNPSDPLNVQAAHLLH 137
>pdb|2A7L|A Chain A, Structure Of The Human Hypothetical Ubiquitin-Conjugating
Enzyme, Loc55284
pdb|2A7L|B Chain B, Structure Of The Human Hypothetical Ubiquitin-Conjugating
Enzyme, Loc55284
Length = 136
Score = 75.1 bits (183), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 51/84 (60%), Gaps = 2/84 (2%)
Query: 20 SIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKF--ETMCFHPNVDQYGNICL 77
SI WI +EG GT+YEG ++L +F YPF PQV F E + HP+V G+ICL
Sbjct: 52 SITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPHVYSNGHICL 111
Query: 78 DILQDKWSSAYDCRTILLSIQSLL 101
IL + WS A +++ LSI S+L
Sbjct: 112 SILTEDWSPALSVQSVCLSIISML 135
>pdb|3O2U|A Chain A, S. Cerevisiae Ubc12
pdb|3O2U|B Chain B, S. Cerevisiae Ubc12
Length = 190
Score = 74.3 bits (181), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 49/79 (62%), Gaps = 4/79 (5%)
Query: 44 SLRFPLD----YPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQS 99
S+ F LD YP +PP+V FHPN+D GN+CL+IL++ WS A D ++I+ +
Sbjct: 81 SINFNLDFNEVYPIEPPKVVCLKKIFHPNIDLKGNVCLNILREDWSPALDLQSIITGLLF 140
Query: 100 LLGEPNPESPLNSYAAALL 118
L EPNP PLN AA LL
Sbjct: 141 LFLEPNPNDPLNKDAAKLL 159
>pdb|2KJH|A Chain A, Nmr Based Structural Model Of The Ubch8-Ubiquitin Complex
Length = 152
Score = 70.1 bits (170), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 57/112 (50%), Gaps = 3/112 (2%)
Query: 17 EGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNIC 76
+ ++ W + + Y ++ L + FP +YPFKPP +KF T +HPNVD+ G IC
Sbjct: 27 DDANVLVWHALLLPDQPP-YHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVDENGQIC 85
Query: 77 LDIL-QDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLN-NKEDYRK 126
L I+ + W +L ++ L+ PN PL A LL N E +RK
Sbjct: 86 LPIISSENWKPCTKTCQVLEALNVLVNRPNIREPLRMDLADLLTQNPELFRK 137
>pdb|1WZV|A Chain A, Crystal Structure Of Ubch8
pdb|1WZV|B Chain B, Crystal Structure Of Ubch8
pdb|1WZW|A Chain A, Crystal Structure Of Ubch8
Length = 155
Score = 70.1 bits (170), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 57/112 (50%), Gaps = 3/112 (2%)
Query: 17 EGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNIC 76
+ ++ W + + Y ++ L + FP +YPFKPP +KF T +HPNVD+ G IC
Sbjct: 30 DDANVLVWHALLLPDQPP-YHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVDENGQIC 88
Query: 77 LDIL-QDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLN-NKEDYRK 126
L I+ + W +L ++ L+ PN PL A LL N E +RK
Sbjct: 89 LPIISSENWKPCTKTCQVLEALNVLVNRPNIREPLRMDLADLLTQNPELFRK 140
>pdb|2Y9P|A Chain A, Pex4p-Pex22p Mutant Ii Structure
Length = 172
Score = 58.5 bits (140), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 61/120 (50%), Gaps = 7/120 (5%)
Query: 24 WIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKF-ETMCFHPNVDQ-YGNICLDILQ 81
W I G T YE +++ + P YP PP++ F + H NV G ICL+IL+
Sbjct: 50 WEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSATGEICLNILK 109
Query: 82 -DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLN--NKEDYRKMVQKQYFAGEFE 138
++W+ +D + ++ LL EP +SPL+ A++ + Y+ +V +YF E E
Sbjct: 110 PEEWTPVWDLLHCVHAVWRLLREPVCDSPLDVDIGAIIRCGDMSAYQGIV--KYFLAERE 167
>pdb|2Y9O|A Chain A, Pex4p-Pex22p Mutant I Structure
Length = 172
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 60/120 (50%), Gaps = 7/120 (5%)
Query: 24 WIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKF-ETMCFHPNVDQ-YGNICLDILQ 81
W I G T YE +++ + P YP PP++ F + H NV G ICL+IL+
Sbjct: 50 WEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHSNVKSATGEICLNILK 109
Query: 82 -DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLN--NKEDYRKMVQKQYFAGEFE 138
++W+ +D + ++ LL EP +SPL+ ++ + Y+ +V +YF E E
Sbjct: 110 PEEWTPVWDLLHCVHAVWRLLREPVSDSPLDVDIGNIIRCGDMSAYQGIV--KYFLAERE 167
>pdb|2Y9M|A Chain A, Pex4p-Pex22p Structure
Length = 172
Score = 56.2 bits (134), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 60/120 (50%), Gaps = 7/120 (5%)
Query: 24 WIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKF-ETMCFHPNVDQ-YGNICLDILQ 81
W I G T YE +++ + P YP PP++ F + H NV G ICL+IL+
Sbjct: 50 WEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSATGEICLNILK 109
Query: 82 -DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLN--NKEDYRKMVQKQYFAGEFE 138
++W+ +D + ++ LL EP +SPL+ ++ + Y+ +V +YF E E
Sbjct: 110 PEEWTPVWDLLHCVHAVWRLLREPVCDSPLDVDIGNIIRCGDMSAYQGIV--KYFLAERE 167
>pdb|2FO3|A Chain A, Plasmodium Vivax Ubiquitin Conjugating Enzyme E2
Length = 125
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Query: 19 ESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKF-ETMCFHPNVDQYGNICL 77
+I WI G + T+Y YKL + FP DYP KPP V F + H +V G+ICL
Sbjct: 33 NNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQKPPKHTHVYSNGDICL 92
Query: 78 DILQDKWSSAYDCRTILLSIQSLLG 102
+L D ++ + ++LSI S+L
Sbjct: 93 SLLGDDYNPSLSISGLVLSIISMLS 117
>pdb|3FN1|B Chain B, E2-Ring Expansion Of The Nedd8 Cascade Confers Specificity
To Cullin Modification
Length = 167
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 60/122 (49%), Gaps = 9/122 (7%)
Query: 15 FPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGN 74
FP+ + + T+ +G Y+G ++ P Y PP+VK T +HPN+ + G
Sbjct: 38 FPDPNKLHCFQLTVTPDEG-YYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITETGE 96
Query: 75 ICLDILQDK------WSSAYDCRTILLSIQSLLGE-PNPESPLNSYAAA-LLNNKEDYRK 126
ICL +L++ W+ + ++ + SL + N + PLN AA L +KED+R
Sbjct: 97 ICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRN 156
Query: 127 MV 128
V
Sbjct: 157 KV 158
>pdb|2EDI|A Chain A, Solution Structure Of The Uq_con Domain From Human Nedd8-
Conjugating Enzyme Nce2
Length = 173
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 60/122 (49%), Gaps = 9/122 (7%)
Query: 15 FPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGN 74
FP+ + + T+ +G Y+G ++ P Y PP+VK T +HPN+ + G
Sbjct: 38 FPDPNKLHCFQLTVTPDEG-YYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITETGE 96
Query: 75 ICLDILQDK------WSSAYDCRTILLSIQSLLGE-PNPESPLNSYAAA-LLNNKEDYRK 126
ICL +L++ W+ + ++ + SL + N + PLN AA L +KED+R
Sbjct: 97 ICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRN 156
Query: 127 MV 128
V
Sbjct: 157 KV 158
>pdb|2H2Y|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|B Chain B, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|C Chain C, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|D Chain D, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
Length = 136
Score = 53.5 bits (127), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 20 SIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKF-ETMCFHPNVDQYGNICLD 78
+I WI G + T+Y YK+ + FP +YP KPP V F + H +V G+ICL
Sbjct: 48 NIRIWIVQYVGLENTIYANEVYKIKIIFPDNYPLKPPIVYFLQKPPKHTHVYSNGDICLS 107
Query: 79 ILQDKWSSAYDCRTILLSIQSLLG 102
+L D ++ + ++LSI S+L
Sbjct: 108 VLGDDYNPSLSISGLILSIISMLS 131
>pdb|4DS2|A Chain A, Ubiquitin Conjugating Enzyme (Putative) From Trypanosoma
Cruzi
pdb|4DS2|B Chain B, Ubiquitin Conjugating Enzyme (Putative) From Trypanosoma
Cruzi
Length = 167
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 17 EGESIFTWIGTIEGGKGTMYEGL--SYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGN 74
+ ++I+ WI ++ ++Y G +Y+LS+ F DYP +PP V+F T + P V G
Sbjct: 45 DTDTIYNWILKVKAPADSVYGGAGNTYQLSVLFSDDYPHEPPTVRFVTPVYSPLVTGEGG 104
Query: 75 ICLDILQDKWS 85
IC ++ D W+
Sbjct: 105 ICDRMVNDFWT 115
>pdb|3E95|C Chain C, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
Length = 158
Score = 50.1 bits (118), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 48/94 (51%), Gaps = 5/94 (5%)
Query: 20 SIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNIC--- 76
++ W TI G GT++E Y L++ +YP PP VKF+T VD G +
Sbjct: 57 TLSNWSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDTKIEMSCVDNCGRVIKNN 116
Query: 77 LDILQDKWSSAYDCRTILLSI-QSLLGEPNPESP 109
L IL++ W+ Y TIL+S+ Q +L N P
Sbjct: 117 LHILKN-WNRNYTIETILISLRQEMLSSANKRLP 149
>pdb|2Q0V|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2,
Putative, From Plasmodium Falciparum
Length = 156
Score = 50.1 bits (118), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 51/105 (48%), Gaps = 5/105 (4%)
Query: 20 SIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNIC--- 76
++ W TI G GT++E Y L++ +YP PP VKF+T VD G +
Sbjct: 53 TLSNWSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDTKIEMSCVDNCGRVIKNN 112
Query: 77 LDILQDKWSSAYDCRTILLSI-QSLLGEPNPESPLNSYAAALLNN 120
L IL++ W+ Y TIL+S+ Q +L N P + NN
Sbjct: 113 LHILKN-WNRNYTIETILISLRQEMLSSANKRLPQPNEGEVYSNN 156
>pdb|2F4W|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 J2
pdb|2F4W|B Chain B, Human Ubiquitin-Conjugating Enzyme E2 J2
Length = 187
Score = 47.4 bits (111), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 46/100 (46%), Gaps = 9/100 (9%)
Query: 12 VSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQ 71
+ A P +I W + G + T YEG Y L FP ++PFKPP + T PN
Sbjct: 34 ICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMIT----PNGRF 89
Query: 72 YGN--ICLDILQ---DKWSSAYDCRTILLSIQSLLGEPNP 106
N +CL I D W+ A+ TIL + S + E P
Sbjct: 90 KCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKGP 129
>pdb|3CEG|A Chain A, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
pdb|3CEG|B Chain B, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
Length = 323
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 13/87 (14%)
Query: 28 IEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFET-----MCFHPNVDQYGNICLDIL-- 80
I G T Y ++ + FP DYP PP V ET + F+PN+ G +CL IL
Sbjct: 116 ITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETTGGHSVRFNPNLYNDGKVCLSILNT 175
Query: 81 -----QDKWSSAYDC-RTILLSIQSLL 101
++KW+ +L+S+QSL+
Sbjct: 176 WHGRPEEKWNPQTSSFLQVLVSVQSLI 202
>pdb|1JAT|B Chain B, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX
Length = 138
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 20 SIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVD-QYGNICLD 78
++ W GTI G + +E Y LS+ +YP PP+V F + P V+ G + D
Sbjct: 38 TMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKINLPCVNPTTGEVQTD 97
Query: 79 --ILQDKWSSAYDCRTILLSIQSLLGEP 104
L+D W AY T+LL ++ + P
Sbjct: 98 FHTLRD-WKRAYTMETLLLDLRKEMATP 124
>pdb|2GMI|B Chain B, Mms2UBC13~UBIQUITIN
Length = 137
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 20 SIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVD-QYGNICLD 78
++ W GTI G + +E Y LS+ +YP PP+V F + P V+ G + D
Sbjct: 37 TMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKINLPCVNPTTGEVQTD 96
Query: 79 --ILQDKWSSAYDCRTILLSIQSLLGEP 104
L+D W AY T+LL ++ + P
Sbjct: 97 FHTLRD-WKRAYTMETLLLDLRKEMATP 123
>pdb|2QGX|A Chain A, Ubiquitin-Conjugating Enzyme E2q
pdb|2QGX|B Chain B, Ubiquitin-Conjugating Enzyme E2q
pdb|2QGX|C Chain C, Ubiquitin-Conjugating Enzyme E2q
pdb|2QGX|D Chain D, Ubiquitin-Conjugating Enzyme E2q
Length = 169
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 4/91 (4%)
Query: 43 LSLRFPLDYPFKPPQVKFETMCFHPN-VDQYGNICLDILQDK-WSSAYDCRTILLSIQSL 100
L+ F ++PF PP V+ + V G IC+++L + WSSAY ++++ I +
Sbjct: 72 LNFSFKDNFPFDPPFVRVVSPVLSGGYVLGGGAICMELLTKQGWSSAYSIESVIMQISAT 131
Query: 101 L--GEPNPESPLNSYAAALLNNKEDYRKMVQ 129
L G+ + N +L ++ Y+ +VQ
Sbjct: 132 LVKGKARVQFGANKSQYSLTRAQQSYKSLVQ 162
>pdb|2C2V|C Chain C, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|F Chain F, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|I Chain I, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|L Chain L, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 142
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 5/89 (5%)
Query: 17 EGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNI- 75
E ++ W G I G T+YE Y L + YP PP V+F T V+ +
Sbjct: 36 EDMTLTRWTGMILGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGVV 95
Query: 76 ---CLDILQDKWSSAYDCRTILLSIQSLL 101
+ +L KW ++Y + +L ++ L+
Sbjct: 96 DPRAISVLA-KWQNSYSIKVVLQELRRLM 123
>pdb|2A4D|A Chain A, Structure Of The Human Ubiquitin-Conjugating Enzyme E2
Variant 1 (Uev- 1)
Length = 160
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 5/89 (5%)
Query: 17 EGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNI- 75
E ++ W G I G T+YE Y L + YP PP V+F T V+ +
Sbjct: 54 EDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGVV 113
Query: 76 ---CLDILQDKWSSAYDCRTILLSIQSLL 101
+ +L KW ++Y + +L ++ L+
Sbjct: 114 DPRAISVLA-KWQNSYSIKVVLQELRRLM 141
>pdb|2HLW|A Chain A, Solution Structure Of The Human Ubiquitin-Conjugating
Enzyme Variant Uev1a
Length = 170
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 5/89 (5%)
Query: 17 EGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNI- 75
E ++ W G I G T+YE Y L + YP PP V+F T V+ +
Sbjct: 64 EDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGVV 123
Query: 76 ---CLDILQDKWSSAYDCRTILLSIQSLL 101
+ +L KW ++Y + +L ++ L+
Sbjct: 124 DPRAISVLA-KWQNSYSIKVVLQELRRLM 151
>pdb|1J74|A Chain A, Crystal Structure Of Mms2
pdb|1J7D|A Chain A, Crystal Structure Of Hmms2-Hubc13
Length = 145
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 5/89 (5%)
Query: 17 EGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNIC 76
E ++ W G I G T YE Y L + YP PP V+F T ++ +
Sbjct: 39 EDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKINMNGINNSSGMV 98
Query: 77 ----LDILQDKWSSAYDCRTILLSIQSLL 101
+ +L KW ++Y + +L ++ L+
Sbjct: 99 DARSIPVLA-KWQNSYSIKVVLQELRRLM 126
>pdb|1ZGU|A Chain A, Solution Structure Of The Human Mms2-Ubiquitin Complex
Length = 139
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 5/89 (5%)
Query: 17 EGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNIC 76
E ++ W G I G T YE Y L + YP PP V+F T ++ +
Sbjct: 33 EDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKINMNGINNSSGMV 92
Query: 77 ----LDILQDKWSSAYDCRTILLSIQSLL 101
+ +L KW ++Y + +L ++ L+
Sbjct: 93 DARSIPVLA-KWQNSYSIKVVLQELRRLM 120
>pdb|4EPO|A Chain A, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|E Chain E, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|I Chain I, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 5/89 (5%)
Query: 17 EGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNIC 76
E ++ W G I G T YE Y L + YP PP V+F T ++ +
Sbjct: 44 EDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKINMNGINNSSGMV 103
Query: 77 ----LDILQDKWSSAYDCRTILLSIQSLL 101
+ +L KW ++Y + +L ++ L+
Sbjct: 104 DARSIPVLA-KWQNSYSIKVVLQELRRLM 131
>pdb|3VON|B Chain B, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|D Chain D, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|F Chain F, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|I Chain I, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|K Chain K, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|M Chain M, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|P Chain P, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|R Chain R, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|T Chain T, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|W Chain W, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Y Chain Y, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|AA Chain a, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|DD Chain d, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|FF Chain f, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|HH Chain h, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|KK Chain k, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|MM Chain m, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|OO Chain o, Crystalstructure Of The Ubiquitin Protease
Length = 138
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 5/89 (5%)
Query: 17 EGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNIC 76
E ++ W G I G T YE Y L + YP PP V+F T ++ +
Sbjct: 34 EDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKINMNGINNSSGMV 93
Query: 77 ----LDILQDKWSSAYDCRTILLSIQSLL 101
+ +L KW ++Y + +L ++ L+
Sbjct: 94 DARSIPVLA-KWQNSYSIKVVLQELRRLM 121
>pdb|1ZUO|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme (Ubci)
Involved In Embryo Attachment And Implantation
pdb|1ZUO|B Chain B, Structure Of Human Ubiquitin-Conjugating Enzyme (Ubci)
Involved In Embryo Attachment And Implantation
Length = 186
Score = 36.6 bits (83), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 47/98 (47%), Gaps = 5/98 (5%)
Query: 37 EGLSYKL-SLRFPLDYPFKPPQVKFETMCFHPN-VDQYGNICLDILQDK-WSSAYDCRTI 93
EG+ Y L + F ++PF PP V+ V G +C+++L + WSSAY ++
Sbjct: 86 EGIEYILLNFSFKDNFPFDPPFVRVVLPVLSGGYVLGGGALCMELLTKQGWSSAYSIESV 145
Query: 94 LLSIQSLL--GEPNPESPLNSYAAALLNNKEDYRKMVQ 129
++ I + L G+ + N L ++ Y +VQ
Sbjct: 146 IMQINATLVKGKARVQFGANKNQYNLARAQQSYNSIVQ 183
>pdb|1JD9|A Chain A, Crystal Structure Analysis Of The Mutant K300q Of
Pseudoalteromonas Haloplanctis Alpha-amylase
Length = 453
Score = 28.1 bits (61), Expect = 1.6, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 28/65 (43%), Gaps = 11/65 (16%)
Query: 30 GGKG---TMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFH-------PNVDQYGNICLDI 79
GG G T +G Y L+ F L YP+ PQV + FH PNV + N L+
Sbjct: 270 GGAGNVITFEDGRLYDLANVFMLAYPYGYPQV-MSSYDFHGDTDAGGPNVPVHNNGNLEC 328
Query: 80 LQDKW 84
W
Sbjct: 329 FASNW 333
>pdb|2YEV|A Chain A, Structure Of Caa3-Type Cytochrome Oxidase
pdb|2YEV|D Chain D, Structure Of Caa3-Type Cytochrome Oxidase
Length = 791
Score = 26.9 bits (58), Expect = 3.7, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 22/55 (40%), Gaps = 15/55 (27%)
Query: 14 AFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRF---------------PLDYPF 53
A P G +F IGT+ GGK M L + L F PLDY F
Sbjct: 322 AVPTGVKLFNIIGTLWGGKLQMKTPLYWVLGFIFNFLLGGITGVMLSMTPLDYQF 376
>pdb|1M57|A Chain A, Structure Of Cytochrome C Oxidase From Rhodobacter
Sphaeroides (Eq(I-286) Mutant))
pdb|1M57|G Chain G, Structure Of Cytochrome C Oxidase From Rhodobacter
Sphaeroides (Eq(I-286) Mutant))
Length = 566
Score = 26.9 bits (58), Expect = 4.1, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 12 VSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRF 47
V A P G IF+WI T+ GG + + + L F
Sbjct: 354 VIAVPTGIKIFSWIATMWGGSIELKTPMLWALGFLF 389
>pdb|1M56|A Chain A, Structure Of Cytochrome C Oxidase From Rhodobactor
Sphaeroides (Wild Type)
pdb|1M56|G Chain G, Structure Of Cytochrome C Oxidase From Rhodobactor
Sphaeroides (Wild Type)
pdb|2GSM|A Chain A, Catalytic Core (Subunits I And Ii) Of Cytochrome C Oxidase
From Rhodobacter Sphaeroides
pdb|2GSM|C Chain C, Catalytic Core (Subunits I And Ii) Of Cytochrome C Oxidase
From Rhodobacter Sphaeroides
pdb|3DTU|A Chain A, Catalytic Core Subunits (i And Ii) Of Cytochrome C Oxidase
From Rhodobacter Sphaeroides Complexed With Deoxycholic
Acid
pdb|3DTU|C Chain C, Catalytic Core Subunits (i And Ii) Of Cytochrome C Oxidase
From Rhodobacter Sphaeroides Complexed With Deoxycholic
Acid
pdb|3FYE|A Chain A, Catalytic Core Subunits (I And Ii) Of Cytochrome C Oxidase
From Rhodobacter Sphaeroides In The Reduced State
pdb|3FYE|C Chain C, Catalytic Core Subunits (I And Ii) Of Cytochrome C Oxidase
From Rhodobacter Sphaeroides In The Reduced State
pdb|3FYI|A Chain A, Catalytic Core Subunits (I And Ii) Of Cytochrome C Oxidase
From Rhodobacter Sphaeroides In The Reduced State Bound
With Cyanide
pdb|3FYI|C Chain C, Catalytic Core Subunits (I And Ii) Of Cytochrome C Oxidase
From Rhodobacter Sphaeroides In The Reduced State Bound
With Cyanide
Length = 566
Score = 26.9 bits (58), Expect = 4.1, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 12 VSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRF 47
V A P G IF+WI T+ GG + + + L F
Sbjct: 354 VIAVPTGIKIFSWIATMWGGSIELKTPMLWALGFLF 389
>pdb|3OMI|A Chain A, Catalytic Core Subunits (I And Ii) Of Cytochrome C Oxidase
From Rhodobacter Sphaeroides With D132a Mutation
pdb|3OMI|C Chain C, Catalytic Core Subunits (I And Ii) Of Cytochrome C Oxidase
From Rhodobacter Sphaeroides With D132a Mutation
pdb|3OMN|A Chain A, Catalytic Core Subunits (I And Ii) Of Cytochrome C Oxidase
From Rhodobacter Sphaeroides With D132a Mutation In The
Reduced State
pdb|3OMN|C Chain C, Catalytic Core Subunits (I And Ii) Of Cytochrome C Oxidase
From Rhodobacter Sphaeroides With D132a Mutation In The
Reduced State
Length = 535
Score = 26.6 bits (57), Expect = 4.3, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 12 VSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRF 47
V A P G IF+WI T+ GG + + + L F
Sbjct: 338 VIAVPTGIKIFSWIATMWGGSIELKTPMLWALGFLF 373
>pdb|1KXH|A Chain A, Crystal Structure Of The Complex Between An Inactive
Mutant Of Psychrophilic Alpha-Amylase (D174n) And
Acarbose
Length = 448
Score = 26.6 bits (57), Expect = 4.8, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 11/65 (16%)
Query: 30 GGKG---TMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFH-------PNVDQYGNICLDI 79
GG G T +G Y L+ F L YP+ P+V + FH PNV + N L+
Sbjct: 270 GGAGNVITFEDGRLYDLANVFMLAYPYGYPKV-MSSYDFHGDTDAGGPNVPVHNNGNLEC 328
Query: 80 LQDKW 84
W
Sbjct: 329 FASNW 333
>pdb|1G94|A Chain A, Crystal Structure Analysis Of The Ternary Complex Between
Psychrophilic Alpha Amylase From Pseudoalteromonas
Haloplanctis In Complex With A Hepta-Saccharide And A
Tris Molecule
pdb|1G9H|A Chain A, Ternary Complex Between Psychrophilic Alpha-Amylase, Comii
(Pseudo Tri-Saccharide From Bayer) And Tris (2-Amino-2-
Hydroxymethyl-Propane-1,3-Diol)
pdb|1L0P|A Chain A, Crystal Structure Analysis Of The Complex Between
Psychrophilic Alpha Amylase From Pseudoalteromonas
Haloplanctis And Nitrate
Length = 448
Score = 26.6 bits (57), Expect = 4.8, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 11/65 (16%)
Query: 30 GGKG---TMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFH-------PNVDQYGNICLDI 79
GG G T +G Y L+ F L YP+ P+V + FH PNV + N L+
Sbjct: 270 GGAGNVITFEDGRLYDLANVFMLAYPYGYPKV-MSSYDFHGDTDAGGPNVPVHNNGNLEC 328
Query: 80 LQDKW 84
W
Sbjct: 329 FASNW 333
>pdb|1B0I|A Chain A, Alpha-Amylase From Alteromonas Haloplanctis
pdb|1AQH|A Chain A, Alpha-Amylase From Alteromonas Haloplanctis
pdb|1AQM|A Chain A, Alpha-Amylase From Alteromonas Haloplanctis Complexed With
Tris
Length = 453
Score = 26.6 bits (57), Expect = 4.9, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 11/65 (16%)
Query: 30 GGKG---TMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFH-------PNVDQYGNICLDI 79
GG G T +G Y L+ F L YP+ P+V + FH PNV + N L+
Sbjct: 270 GGAGNVITFEDGRLYDLANVFMLAYPYGYPKV-MSSYDFHGDTDAGGPNVPVHNNGNLEC 328
Query: 80 LQDKW 84
W
Sbjct: 329 FASNW 333
>pdb|1JD7|A Chain A, Crystal Structure Analysis Of The Mutant K300r Of
Pseudoalteromonas Haloplanctis Alpha-Amylase
Length = 453
Score = 26.6 bits (57), Expect = 5.2, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 11/65 (16%)
Query: 30 GGKG---TMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFH-------PNVDQYGNICLDI 79
GG G T +G Y L+ F L YP+ P+V + FH PNV + N L+
Sbjct: 270 GGAGNVITFEDGRLYDLANVFMLAYPYGYPRV-MSSYDFHGDTDAGGPNVPVHNNGNLEC 328
Query: 80 LQDKW 84
W
Sbjct: 329 FASNW 333
>pdb|3OM3|A Chain A, Catalytic Core Subunits (I And Ii) Of Cytochrome C Oxidase
From Rhodobacter Sphaeroides With K362m Mutation In The
Reduced State
pdb|3OM3|C Chain C, Catalytic Core Subunits (I And Ii) Of Cytochrome C Oxidase
From Rhodobacter Sphaeroides With K362m Mutation In The
Reduced State
pdb|3OMA|A Chain A, Catalytic Core Subunits (I And Ii) Of Cytochrome C Oxidase
From Rhodobacter Sphaeroides With K362m Mutation
pdb|3OMA|C Chain C, Catalytic Core Subunits (I And Ii) Of Cytochrome C Oxidase
From Rhodobacter Sphaeroides With K362m Mutation
Length = 535
Score = 26.2 bits (56), Expect = 6.2, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 12 VSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRF 47
V A P G IF+WI T+ GG + + + L F
Sbjct: 338 VIAVPTGIMIFSWIATMWGGSIELKTPMLWALGFLF 373
>pdb|1V54|A Chain A, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
State
pdb|1V54|N Chain N, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
State
pdb|1V55|A Chain A, Bovine Heart Cytochrome C Oxidase At The Fully Reduced
State
pdb|1V55|N Chain N, Bovine Heart Cytochrome C Oxidase At The Fully Reduced
State
pdb|2DYR|A Chain A, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
State
pdb|2DYR|N Chain N, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
State
pdb|2DYS|A Chain A, Bovine Heart Cytochrome C Oxidase Modified By Dccd
pdb|2DYS|N Chain N, Bovine Heart Cytochrome C Oxidase Modified By Dccd
pdb|2EIJ|A Chain A, Bovine Heart Cytochrome C Oxidase In The Fully Reduced
State
pdb|2EIJ|N Chain N, Bovine Heart Cytochrome C Oxidase In The Fully Reduced
State
pdb|2EIK|A Chain A, Cadmium Ion Binding Structure Of Bovine Heart Cytochrome C
Oxidase In The Fully Reduced State
pdb|2EIK|N Chain N, Cadmium Ion Binding Structure Of Bovine Heart Cytochrome C
Oxidase In The Fully Reduced State
pdb|2EIL|A Chain A, Cadmium Ion Binding Structure Of Bovine Heart Cytochrome C
Oxidase In The Fully Oxidized State
pdb|2EIL|N Chain N, Cadmium Ion Binding Structure Of Bovine Heart Cytochrome C
Oxidase In The Fully Oxidized State
pdb|2EIM|A Chain A, Zinc Ion Binding Structure Of Bovine Heart Cytochrome C
Oxidase In The Fully Reduced State
pdb|2EIM|N Chain N, Zinc Ion Binding Structure Of Bovine Heart Cytochrome C
Oxidase In The Fully Reduced State
pdb|2EIN|A Chain A, Zinc Ion Binding Structure Of Bovine Heart Cytochrome C
Oxidase In The Fully Oxidized State
pdb|2EIN|N Chain N, Zinc Ion Binding Structure Of Bovine Heart Cytochrome C
Oxidase In The Fully Oxidized State
pdb|2ZXW|A Chain A, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
State (1-S X-Ray Exposure Dataset)
pdb|2ZXW|N Chain N, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
State (1-S X-Ray Exposure Dataset)
pdb|3ABL|A Chain A, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
State (15-S X-Ray Exposure Dataset)
pdb|3ABL|N Chain N, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
State (15-S X-Ray Exposure Dataset)
pdb|3ABM|A Chain A, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
State (200-S X-Ray Exposure Dataset)
pdb|3ABM|N Chain N, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
State (200-S X-Ray Exposure Dataset)
pdb|3ABK|A Chain A, Bovine Heart Cytochrome C Oxidase At The No-Bound Fully
Reduced State (50k)
pdb|3ABK|N Chain N, Bovine Heart Cytochrome C Oxidase At The No-Bound Fully
Reduced State (50k)
pdb|3AG1|A Chain A, Bovine Heart Cytochrome C Oxidase In The Carbon
Monoxide-Bou Reduced State At 280 K
pdb|3AG1|N Chain N, Bovine Heart Cytochrome C Oxidase In The Carbon
Monoxide-Bou Reduced State At 280 K
pdb|3AG2|A Chain A, Bovine Heart Cytochrome C Oxidase In The Carbon
Monoxide-Bou Reduced State At 100 K
pdb|3AG2|N Chain N, Bovine Heart Cytochrome C Oxidase In The Carbon
Monoxide-Bou Reduced State At 100 K
pdb|3AG3|A Chain A, Bovine Heart Cytochrome C Oxidase In The Nitric
Oxide-Bound Reduced State At 100 K
pdb|3AG3|N Chain N, Bovine Heart Cytochrome C Oxidase In The Nitric
Oxide-Bound Reduced State At 100 K
pdb|3AG4|A Chain A, Bovine Heart Cytochrome C Oxidase In The Cyanide Ion-Bound
F Reduced State At 100 K
pdb|3AG4|N Chain N, Bovine Heart Cytochrome C Oxidase In The Cyanide Ion-Bound
F Reduced State At 100 K
pdb|3ASN|A Chain A, Bovine Heart Cytochrome C Oxidase In The Fully Oxidized
State Measured At 1.7470 Angstrom Wavelength
pdb|3ASN|N Chain N, Bovine Heart Cytochrome C Oxidase In The Fully Oxidized
State Measured At 1.7470 Angstrom Wavelength
pdb|3ASO|A Chain A, Bovine Heart Cytochrome C Oxidase In The Fully Oxidized
State Measured At 0.9 Angstrom Wavelength
pdb|3ASO|N Chain N, Bovine Heart Cytochrome C Oxidase In The Fully Oxidized
State Measured At 0.9 Angstrom Wavelength
Length = 514
Score = 26.2 bits (56), Expect = 6.2, Method: Composition-based stats.
Identities = 10/36 (27%), Positives = 17/36 (47%)
Query: 12 VSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRF 47
+ A P G +F+W+ T+ GG + + L F
Sbjct: 311 IIAIPTGVKVFSWLATLHGGNIKWSPAMMWALGFIF 346
>pdb|1OCC|A Chain A, Structure Of Bovine Heart Cytochrome C Oxidase At The
Fully Oxidized State
pdb|1OCC|N Chain N, Structure Of Bovine Heart Cytochrome C Oxidase At The
Fully Oxidized State
pdb|2OCC|A Chain A, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
State
pdb|2OCC|N Chain N, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
State
pdb|1OCO|A Chain A, Bovine Heart Cytochrome C Oxidase In Carbon Monoxide-bound
State
pdb|1OCO|N Chain N, Bovine Heart Cytochrome C Oxidase In Carbon Monoxide-bound
State
pdb|1OCR|A Chain A, Bovine Heart Cytochrome C Oxidase In The Fully Reduced
State
pdb|1OCR|N Chain N, Bovine Heart Cytochrome C Oxidase In The Fully Reduced
State
pdb|1OCZ|A Chain A, Bovine Heart Cytochrome C Oxidase In Azide-Bound State
pdb|1OCZ|N Chain N, Bovine Heart Cytochrome C Oxidase In Azide-Bound State
pdb|2Y69|A Chain A, Bovine Heart Cytochrome C Oxidase Re-Refined With
Molecular Oxygen
pdb|2Y69|N Chain N, Bovine Heart Cytochrome C Oxidase Re-Refined With
Molecular Oxygen
pdb|2YBB|L Chain L, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
Length = 514
Score = 26.2 bits (56), Expect = 6.2, Method: Composition-based stats.
Identities = 10/36 (27%), Positives = 17/36 (47%)
Query: 12 VSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRF 47
+ A P G +F+W+ T+ GG + + L F
Sbjct: 311 IIAIPTGVKVFSWLATLHGGNIKWSPAMMWALGFIF 346
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.137 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,623,809
Number of Sequences: 62578
Number of extensions: 184429
Number of successful extensions: 573
Number of sequences better than 100.0: 132
Number of HSP's better than 100.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 397
Number of HSP's gapped (non-prelim): 134
length of query: 139
length of database: 14,973,337
effective HSP length: 89
effective length of query: 50
effective length of database: 9,403,895
effective search space: 470194750
effective search space used: 470194750
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 46 (22.3 bits)