Query 032505
Match_columns 139
No_of_seqs 133 out of 1060
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 14:57:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032505.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032505hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0417 Ubiquitin-protein liga 100.0 2.4E-54 5.2E-59 301.3 12.2 135 2-137 12-147 (148)
2 COG5078 Ubiquitin-protein liga 100.0 1.1E-52 2.4E-57 298.3 13.9 135 2-137 16-152 (153)
3 KOG0419 Ubiquitin-protein liga 100.0 1E-49 2.2E-54 271.7 11.8 134 1-135 14-148 (152)
4 PTZ00390 ubiquitin-conjugating 100.0 5.9E-49 1.3E-53 281.1 14.9 136 2-138 13-149 (152)
5 PLN00172 ubiquitin conjugating 100.0 1.3E-48 2.8E-53 278.0 14.8 135 2-137 12-147 (147)
6 KOG0425 Ubiquitin-protein liga 100.0 2.4E-47 5.2E-52 266.9 12.8 136 1-137 15-165 (171)
7 KOG0424 Ubiquitin-protein liga 100.0 1.5E-44 3.2E-49 249.7 12.4 135 2-137 15-157 (158)
8 KOG0418 Ubiquitin-protein liga 100.0 7.3E-44 1.6E-48 256.1 11.7 130 9-138 23-154 (200)
9 KOG0421 Ubiquitin-protein liga 100.0 2E-43 4.3E-48 244.3 9.2 133 2-135 40-172 (175)
10 PF00179 UQ_con: Ubiquitin-con 100.0 4.6E-43 1E-47 247.3 10.8 130 2-132 8-140 (140)
11 cd00195 UBCc Ubiquitin-conjuga 100.0 4.2E-42 9.2E-47 242.8 13.2 130 2-132 10-141 (141)
12 smart00212 UBCc Ubiquitin-conj 100.0 1.5E-41 3.3E-46 240.9 14.4 134 2-136 9-145 (145)
13 KOG0426 Ubiquitin-protein liga 100.0 1.6E-41 3.4E-46 231.9 11.8 133 1-134 14-161 (165)
14 KOG0416 Ubiquitin-protein liga 100.0 3.9E-38 8.4E-43 223.3 9.2 129 10-138 18-149 (189)
15 KOG0420 Ubiquitin-protein liga 100.0 7.6E-37 1.7E-41 217.0 10.4 131 7-138 41-176 (184)
16 KOG0422 Ubiquitin-protein liga 100.0 1.3E-35 2.9E-40 204.2 12.5 124 14-138 25-150 (153)
17 KOG0423 Ubiquitin-protein liga 100.0 3.8E-35 8.3E-40 208.7 6.0 136 2-138 21-157 (223)
18 KOG0427 Ubiquitin conjugating 100.0 7.5E-28 1.6E-32 164.5 10.1 107 2-110 26-134 (161)
19 KOG0894 Ubiquitin-protein liga 99.9 1.1E-25 2.3E-30 165.4 11.1 104 2-108 16-124 (244)
20 KOG0429 Ubiquitin-conjugating 99.9 7.3E-24 1.6E-28 156.2 12.1 128 7-135 34-168 (258)
21 KOG0428 Non-canonical ubiquiti 99.8 6E-20 1.3E-24 137.6 8.6 97 7-105 25-125 (314)
22 KOG0895 Ubiquitin-conjugating 99.7 2.8E-17 6.1E-22 142.6 5.7 96 7-102 866-970 (1101)
23 KOG0895 Ubiquitin-conjugating 99.6 1.6E-14 3.6E-19 125.7 9.4 98 6-103 296-404 (1101)
24 KOG0896 Ubiquitin-conjugating 99.5 8.8E-14 1.9E-18 95.8 7.1 83 20-102 37-122 (138)
25 PF14461 Prok-E2_B: Prokaryoti 98.7 1.3E-07 2.7E-12 66.2 7.3 66 37-102 34-105 (133)
26 KOG0897 Predicted ubiquitin-co 98.6 1.7E-07 3.6E-12 63.2 5.5 89 41-130 13-108 (122)
27 PF05743 UEV: UEV domain; Int 98.5 5.9E-07 1.3E-11 62.0 6.5 77 21-102 32-116 (121)
28 KOG2391 Vacuolar sorting prote 97.1 0.0032 7E-08 50.2 7.8 74 29-103 56-137 (365)
29 PF14462 Prok-E2_E: Prokaryoti 96.4 0.044 9.6E-07 37.8 8.4 91 11-102 13-120 (122)
30 PF05773 RWD: RWD domain; Int 95.2 0.075 1.6E-06 35.0 5.6 46 20-65 28-75 (113)
31 smart00591 RWD domain in RING 95.1 0.55 1.2E-05 30.5 9.6 25 38-62 40-64 (107)
32 PF14457 Prok-E2_A: Prokaryoti 94.7 0.068 1.5E-06 38.6 4.6 60 43-102 57-125 (162)
33 PF08694 UFC1: Ubiquitin-fold 93.8 0.07 1.5E-06 37.7 2.9 53 41-93 77-134 (161)
34 PF14460 Prok-E2_D: Prokaryoti 74.0 5 0.00011 29.1 3.6 34 67-103 98-131 (175)
35 TIGR03737 PRTRC_B PRTRC system 71.6 7.2 0.00016 29.8 4.0 38 67-108 139-177 (228)
36 KOG3357 Uncharacterized conser 71.5 11 0.00024 26.4 4.6 65 23-87 52-128 (167)
37 KOG4018 Uncharacterized conser 71.2 3.9 8.5E-05 30.8 2.5 19 40-58 50-68 (215)
38 KOG0177 20S proteasome, regula 68.6 9.4 0.0002 28.4 3.9 31 72-102 135-165 (200)
39 PF06113 BRE: Brain and reprod 65.8 20 0.00044 28.9 5.7 42 21-68 53-95 (333)
40 KOG0309 Conserved WD40 repeat- 63.0 27 0.00058 31.5 6.2 40 22-62 449-490 (1081)
41 PF09765 WD-3: WD-repeat regio 54.3 17 0.00037 28.7 3.4 64 18-101 122-186 (291)
42 cd00421 intradiol_dioxygenase 53.3 22 0.00048 24.9 3.6 25 37-61 64-89 (146)
43 PF03366 YEATS: YEATS family; 51.2 61 0.0013 20.6 5.1 42 22-65 2-43 (84)
44 cd03457 intradiol_dioxygenase_ 50.7 25 0.00054 25.9 3.6 26 37-62 85-110 (188)
45 PF00845 Gemini_BL1: Geminivir 42.0 75 0.0016 24.7 5.1 48 18-65 99-154 (276)
46 cd03459 3,4-PCD Protocatechuat 40.7 46 0.00099 23.8 3.6 25 38-62 72-101 (158)
47 cd05845 Ig2_L1-CAM_like Second 38.6 77 0.0017 20.6 4.2 26 36-63 16-41 (95)
48 cd07981 TAF12 TATA Binding Pro 37.9 89 0.0019 19.1 4.2 42 96-137 6-48 (72)
49 PF04881 Adeno_GP19K: Adenovir 36.2 40 0.00087 23.5 2.6 19 18-36 44-62 (139)
50 KOG4445 Uncharacterized conser 33.6 53 0.0012 26.4 3.2 25 39-63 45-69 (368)
51 PF13950 Epimerase_Csub: UDP-g 31.5 47 0.001 19.8 2.1 20 83-102 37-56 (62)
52 PF06113 BRE: Brain and reprod 30.3 72 0.0016 25.8 3.5 23 40-62 307-329 (333)
53 PF03847 TFIID_20kDa: Transcri 29.6 1.4E+02 0.003 18.2 4.2 41 96-136 4-45 (68)
54 COG3866 PelB Pectate lyase [Ca 29.5 95 0.0021 25.1 4.0 39 23-62 198-240 (345)
55 TIGR02423 protocat_alph protoc 27.4 93 0.002 23.0 3.5 25 37-61 95-124 (193)
56 KOG1047 Bifunctional leukotrie 25.8 71 0.0015 27.8 2.9 29 34-63 248-279 (613)
57 cd03463 3,4-PCD_alpha Protocat 25.7 1.1E+02 0.0023 22.6 3.5 24 38-61 92-120 (185)
58 PF02563 Poly_export: Polysacc 25.0 99 0.0022 19.1 2.9 36 68-103 34-69 (82)
59 PF04314 DUF461: Protein of un 23.9 1E+02 0.0023 20.3 3.0 27 23-49 77-103 (110)
60 cd02848 Chitinase_N_term Chiti 22.3 1.3E+02 0.0028 20.3 3.1 11 37-47 78-88 (106)
61 PF12652 CotJB: CotJB protein; 21.1 1.9E+02 0.0041 18.2 3.5 29 107-135 24-53 (78)
62 KOG0662 Cyclin-dependent kinas 21.0 1E+02 0.0022 23.4 2.6 55 53-107 167-225 (292)
63 PF00779 BTK: BTK motif; Inte 20.9 37 0.0008 17.7 0.2 14 64-77 2-16 (32)
64 KOG2851 Eukaryotic-type DNA pr 20.7 2.3E+02 0.0051 23.4 4.7 29 72-100 336-369 (412)
65 PF09943 DUF2175: Uncharacteri 20.1 1E+02 0.0022 20.5 2.2 19 23-43 2-20 (101)
66 smart00803 TAF TATA box bindin 20.1 1.7E+02 0.0036 17.6 3.1 29 109-137 19-48 (65)
No 1
>KOG0417 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.4e-54 Score=301.32 Aligned_cols=135 Identities=43% Similarity=0.770 Sum_probs=132.3
Q ss_pred cccccCCCCCeEEeeCCCCceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccccCCcccCCCcEeeecCC
Q 032505 2 SLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQ 81 (139)
Q Consensus 2 ~l~~~~~~~gi~~~p~~~~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~Hpni~~~G~icl~~l~ 81 (139)
+|.+ +|++|+++.+.++|+++|+++|.||.|||||||+|++.|.||++||++||+|+|.|+||||||+.+|.||+|+|+
T Consensus 12 ~l~~-dp~~~~~~~~~~dnl~~w~a~I~GP~~SpYEgG~F~l~I~~p~~YP~~PPkV~F~TkIyHPNI~~~G~IclDILk 90 (148)
T KOG0417|consen 12 DLLR-DPPPGCSAGPVGDNLFHWQATILGPPGSPYEGGVFFLEIHFPEDYPFKPPKVRFLTKIYHPNIDSNGRICLDILK 90 (148)
T ss_pred HHhc-CCCCCCccCCCCCceeeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCceEeecccccCCcCccccchHHhhh
Confidence 3566 999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCCCcccHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhcc
Q 032505 82 DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEF 137 (139)
Q Consensus 82 ~~W~p~~~i~~iL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~~r~~~~~~a~ 137 (139)
++|+|+++|.+||++|++||.+||+++|++.++|++|+.| ++|.++||+||++||+
T Consensus 91 ~~WsPAl~i~~VllsI~sLL~~PnpddPL~~~ia~~~k~d~~~~~~~ARewt~kyA~ 147 (148)
T KOG0417|consen 91 DQWSPALTISKVLLSICSLLSDPNPDDPLVPDIAELYKTDRAKYERTAREWTRKYAM 147 (148)
T ss_pred ccCChhhHHHHHHHHHHHHhcCCCCCccccHHHHHHHHhhHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999 9999999999999997
No 2
>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-52 Score=298.28 Aligned_cols=135 Identities=51% Similarity=0.837 Sum_probs=131.8
Q ss_pred cccccCCCCCeEEeeCCC-CceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccccCCcccCCCcEeeecC
Q 032505 2 SLMMSGGDLGVSAFPEGE-SIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDIL 80 (139)
Q Consensus 2 ~l~~~~~~~gi~~~p~~~-~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~Hpni~~~G~icl~~l 80 (139)
+|++ ++++|+++.|.++ |+++|+++|.||++||||||+|++.|.||++||++||+|+|.++||||||+.+|+||+|+|
T Consensus 16 ~l~~-~~~~~~~a~p~~d~~l~~w~~~i~GP~dtpYegg~f~~~l~fP~~YP~~PPkv~F~t~i~HPNV~~~G~vCLdIL 94 (153)
T COG5078 16 KLQK-DPPPGISAGPVDDDNLFHWEATITGPPDTPYEGGIFKLTLEFPEDYPFKPPKVRFTTKIFHPNVDPSGNVCLDIL 94 (153)
T ss_pred HHhc-CCCCceEEEECCCCcceeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeeccCCcCCCcCCCCCChhHHH
Confidence 4667 8899999999988 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCCCcccHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhcc
Q 032505 81 QDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEF 137 (139)
Q Consensus 81 ~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~~r~~~~~~a~ 137 (139)
++.|+|++++++||.+|+++|.+||.++|+|.+||++|++| ++|.++||+++++||.
T Consensus 95 ~~~WsP~~~l~sILlsl~slL~~PN~~~Pln~daa~~~~~d~~~y~~~vr~~~~~~~~ 152 (153)
T COG5078 95 KDRWSPVYTLETILLSLQSLLLSPNPDSPLNTEAATLYREDKEEYEKKVREWVKKYAE 152 (153)
T ss_pred hCCCCccccHHHHHHHHHHHHcCCCCCCCCChHHHHHHHhCHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999 9999999999999986
No 3
>KOG0419 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-49 Score=271.74 Aligned_cols=134 Identities=45% Similarity=0.758 Sum_probs=130.3
Q ss_pred CcccccCCCCCeEEeeCCCCceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccccCCcccCCCcEeeecC
Q 032505 1 MSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDIL 80 (139)
Q Consensus 1 ~~l~~~~~~~gi~~~p~~~~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~Hpni~~~G~icl~~l 80 (139)
|+|++ +|+.||++.|.++|++.|.++|+||.+|||+||+|++.|.|+++||.+||.|+|.+++|||||+.+|.+|+|+|
T Consensus 14 krlqe-dpp~gisa~P~~~niM~W~a~I~Gp~~tp~e~gtFkLtl~FteeYpnkPP~VrFvs~mFHPNvya~G~iClDiL 92 (152)
T KOG0419|consen 14 KRLQE-DPPAGISAAPVENNIMEWNAVIFGPQDTPFEGGTFKLTLEFTEEYPNKPPTVRFVSKMFHPNVYADGSICLDIL 92 (152)
T ss_pred HHhhc-CCCCCccCCCCccceeeeeeeEEcCCCCCcCCceEEEEEEcccccCCCCCeeEeeeeccCCCcCCCCcchHHHH
Confidence 46788 99999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCCCcccHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhh
Q 032505 81 QDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAG 135 (139)
Q Consensus 81 ~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~~r~~~~~~ 135 (139)
...|+|+|++.+||++||+||.+||+++|+|.+||++|.++ .+|.++++..+.+.
T Consensus 93 qNrWsp~Ydva~ILtsiQslL~dPn~~sPaN~eAA~Lf~e~~rey~rrVk~~veqs 148 (152)
T KOG0419|consen 93 QNRWSPTYDVASILTSIQSLLNDPNPNSPANSEAARLFSENKREYERRVKETVEQS 148 (152)
T ss_pred hcCCCCchhHHHHHHHHHHHhcCCCCCCcccHHHHHHHhhChHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999 99999999987663
No 4
>PTZ00390 ubiquitin-conjugating enzyme; Provisional
Probab=100.00 E-value=5.9e-49 Score=281.07 Aligned_cols=136 Identities=41% Similarity=0.681 Sum_probs=132.1
Q ss_pred cccccCCCCCeEEeeCCCCceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccccCCcccCCCcEeeecCC
Q 032505 2 SLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQ 81 (139)
Q Consensus 2 ~l~~~~~~~gi~~~p~~~~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~Hpni~~~G~icl~~l~ 81 (139)
+|++ ++++|+.+.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+++|.||+++|.
T Consensus 13 ~l~~-~~~~~i~~~~~~~d~~~w~~~i~GP~~tpY~gg~f~~~i~~p~~YP~~pP~v~F~t~i~HPNV~~~G~iCl~iL~ 91 (152)
T PTZ00390 13 NLAN-DPPPGIKAEPDPGNYRHFKILMEGPDGTPYEGGYYKLELFLPEQYPMEPPKVRFLTKIYHPNIDKLGRICLDILK 91 (152)
T ss_pred HHHh-CCCCCeEEEECCCCccEEEEEEEcCCCCCCcCcEEEEEEECccccCCCCCEEEEecCCeeceECCCCeEECccCc
Confidence 4566 889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCCCcccHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhccC
Q 032505 82 DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEFE 138 (139)
Q Consensus 82 ~~W~p~~~i~~iL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~~r~~~~~~a~~ 138 (139)
+.|+|++|+++||++|+++|.+|++++|+|.+||++|++| ++|.++||+|+++||.-
T Consensus 92 ~~W~p~~ti~~iL~~i~~ll~~P~~~~pln~~aa~~~~~d~~~f~~~a~~~~~~~a~~ 149 (152)
T PTZ00390 92 DKWSPALQIRTVLLSIQALLSAPEPDDPLDTSVADHFKNNRADAEKVAREWNQKYAKH 149 (152)
T ss_pred ccCCCCCcHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHCHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999 99999999999999963
No 5
>PLN00172 ubiquitin conjugating enzyme; Provisional
Probab=100.00 E-value=1.3e-48 Score=277.99 Aligned_cols=135 Identities=39% Similarity=0.712 Sum_probs=131.5
Q ss_pred cccccCCCCCeEEeeCCCCceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccccCCcccCCCcEeeecCC
Q 032505 2 SLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQ 81 (139)
Q Consensus 2 ~l~~~~~~~gi~~~p~~~~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~Hpni~~~G~icl~~l~ 81 (139)
+|++ ++++|+++.+.++|+++|+++|.||++|||+||.|++.|.||++||++||+|+|.|+++||||+.+|.||+++|.
T Consensus 12 ~l~~-~~~~~~~~~~~~~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPNv~~~G~iCl~il~ 90 (147)
T PLN00172 12 DLLK-DPPSNCSAGPSDENLFRWTASIIGPSDSPYAGGVFFLSILFPPDYPFKPPKVQFTTKIYHPNINSNGSICLDILR 90 (147)
T ss_pred HHHh-CCCCCeEEEECCCChheEEEEEECCCCCCCCCCEEEEEEECCcccCCCCCEEEEecCcccceECCCCEEEcccCc
Confidence 5667 899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCCCcccHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhcc
Q 032505 82 DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEF 137 (139)
Q Consensus 82 ~~W~p~~~i~~iL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~~r~~~~~~a~ 137 (139)
+.|+|++|+++||.+|+++|.+|++++|+|.+||++|.+| ++|.++||+|+++||.
T Consensus 91 ~~W~p~~ti~~il~~i~~ll~~P~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~~~a~ 147 (147)
T PLN00172 91 DQWSPALTVSKVLLSISSLLTDPNPDDPLVPEIARVFKENRSRYEATAREWTQRYAT 147 (147)
T ss_pred CCCCCcCcHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHCHHHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999999999999999 9999999999999983
No 6
>KOG0425 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.4e-47 Score=266.92 Aligned_cols=136 Identities=37% Similarity=0.619 Sum_probs=128.6
Q ss_pred CcccccCCCCCeEEeeCCC-CceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccccCCcccCCCcEeeec
Q 032505 1 MSLMMSGGDLGVSAFPEGE-SIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDI 79 (139)
Q Consensus 1 ~~l~~~~~~~gi~~~p~~~-~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~Hpni~~~G~icl~~ 79 (139)
|+|+. +|..|+++...++ |+++|.+.|.||++|+||||.|+..+.||.+||.+||+++|.+++|||||+++|.+|++|
T Consensus 15 k~L~~-~pv~gf~~glvd~~dif~WeV~i~gppdTlYeGG~FkA~m~FP~dYP~sPP~~rF~s~mwHPNvy~~G~vCISI 93 (171)
T KOG0425|consen 15 KELQE-EPVEGFSVGLVDDSDIFEWEVAIIGPPDTLYEGGFFKAHMKFPQDYPLSPPTFRFTSKMWHPNVYEDGDVCISI 93 (171)
T ss_pred HHHhc-CCCCccccccccCCceeEEEEEEEcCCCccccCceeEEEEeCcccCCCCCCceeeehhhcCCCcCCCCCEEEEe
Confidence 35677 9999999998755 999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC-------------CcCCCcccHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhcc
Q 032505 80 LQ-------------DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEF 137 (139)
Q Consensus 80 l~-------------~~W~p~~~i~~iL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~~r~~~~~~a~ 137 (139)
|. +.|.|.+|+++||++|.+||.+||.++|+|.|||+.|+++ ++|++++++++.+...
T Consensus 94 LH~pgdD~~gyE~~~erW~Pv~tvetIllSiIsmL~~PN~~SPANVDAa~~~Ren~~EykkkV~r~vr~s~e 165 (171)
T KOG0425|consen 94 LHPPGDDPSGYELPSERWLPVQTVETILLSIISMLNSPNDESPANVDAAKEWRENPEEYKKKVRRCVRRSQE 165 (171)
T ss_pred ecCCCCCcccCCChhhccCCccchhHhHHHHHHHHcCCCCCCccchHHHHHHhhCHHHHHHHHHHHHHHHHH
Confidence 94 4799999999999999999999999999999999999999 9999999999987643
No 7
>KOG0424 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-44 Score=249.65 Aligned_cols=135 Identities=38% Similarity=0.611 Sum_probs=129.2
Q ss_pred cccccCCCCCeEEeeC-----CCCceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccccCCcccCCCcEe
Q 032505 2 SLMMSGGDLGVSAFPE-----GESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNIC 76 (139)
Q Consensus 2 ~l~~~~~~~gi~~~p~-----~~~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~Hpni~~~G~ic 76 (139)
.+++ +.+-|+++.|. ..|++.|+|.|.|+.||+||||.|++++.||++||.+||+++|.+++|||||+.+|.||
T Consensus 15 ~wrk-~hp~gf~AkP~~~~dg~~nl~~Wec~IPG~~~t~wEGg~y~l~v~F~~dyP~~PPkckF~~pl~HPNVypsgtVc 93 (158)
T KOG0424|consen 15 KWRK-DHPFGFYAKPVKNADGTLNLMNWECGIPGKKGTPWEGGLYKLTVNFPDDYPSSPPKCKFKPPLFHPNVYPSGTVC 93 (158)
T ss_pred HHhh-cCCCceeeeccCCCCCcceeEEEEeecCCCCCCcCcCceEEEEEeCCccCCCCCCccccCCCCcCCCcCCCCcEe
Confidence 4566 88999999996 34899999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCc--CCCcccHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhcc
Q 032505 77 LDILQDK--WSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEF 137 (139)
Q Consensus 77 l~~l~~~--W~p~~~i~~iL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~~r~~~~~~a~ 137 (139)
|++|.++ |+|+.||.+||..||+||.+||..+|+|.+|..+|.+| .+|+++||.++++||.
T Consensus 94 LsiL~e~~~W~paitikqiL~gIqdLL~~Pn~~~pAq~eA~~~~~~~r~eYekrvr~qak~~a~ 157 (158)
T KOG0424|consen 94 LSILNEEKDWRPAITIKQILLGIQDLLDTPNITSPAQTEAYTIYCQDRAEYEKRVRAQAKEYAK 157 (158)
T ss_pred hhhhccccCCCchhhHHHHHHHHHHHhcCCCCCCchhhHHHHHHhhCHHHHHHHHHHHHHHhcc
Confidence 9999865 99999999999999999999999999999999999999 9999999999999985
No 8
>KOG0418 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.3e-44 Score=256.06 Aligned_cols=130 Identities=36% Similarity=0.615 Sum_probs=127.3
Q ss_pred CCCeEEeeCCCCceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccccCCcccC-CCcEeeecCCCcCCCc
Q 032505 9 DLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQ-YGNICLDILQDKWSSA 87 (139)
Q Consensus 9 ~~gi~~~p~~~~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~Hpni~~-~G~icl~~l~~~W~p~ 87 (139)
..||.+...++|+.+.++.|.||+|||||||+|.+.|++|++||++||+|+|.|+||||||.+ +|.||+|++++.|+++
T Consensus 23 q~~I~ve~vn~~~~~ikG~I~GP~~TPYEGG~FeldI~iPe~YPF~pPkv~F~TkIwHPnVSs~tGaICLDilkd~Wa~s 102 (200)
T KOG0418|consen 23 QAGIIVEMVNENLKEIKGHIAGPEDTPYEGGVFELDIKIPENYPFKPPKVKFITKIWHPNVSSQTGAICLDILKDQWAAS 102 (200)
T ss_pred hcceEEEEccCChhhceeEecCCCCCCCCCceEEEEEecCCCCCCCCCceeeeeeeecCCCCcccccchhhhhhcccchh
Confidence 579999999999999999999999999999999999999999999999999999999999998 9999999999999999
Q ss_pred ccHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhccC
Q 032505 88 YDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEFE 138 (139)
Q Consensus 88 ~~i~~iL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~~r~~~~~~a~~ 138 (139)
+|++++|++||++|..|++.+|.+..+|+.|.++ +.|.++||.||.+||-.
T Consensus 103 lTlrtvLislQalL~~pEp~dPqDavva~qy~~n~~~F~~TAr~WT~~fA~~ 154 (200)
T KOG0418|consen 103 LTLRTVLISLQALLCAPEPKDPQDAVVAEQYVDNYEMFYKTARYWTTEFAGG 154 (200)
T ss_pred hhHHHHHHHHHHHHcCCCCCChHHHHHHHHHhhhHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999 99999999999999964
No 9
>KOG0421 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-43 Score=244.26 Aligned_cols=133 Identities=63% Similarity=1.102 Sum_probs=127.0
Q ss_pred cccccCCCCCeEEeeCCCCceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccccCCcccCCCcEeeecCC
Q 032505 2 SLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQ 81 (139)
Q Consensus 2 ~l~~~~~~~gi~~~p~~~~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~Hpni~~~G~icl~~l~ 81 (139)
.|++ ...+||++.|++||++.|.++|.||.+|+|+|-.|++.+.||.+||++||+|+|+|++||||||..|.||+|||+
T Consensus 40 ~Lmm-s~~~gISAFP~~dnlf~WvGtItGp~dTvyegl~yklSl~Fp~~YPy~pP~vkFltpc~HPNVD~~GnIcLDILk 118 (175)
T KOG0421|consen 40 GLMM-SNTPGISAFPESDNLFKWVGTITGPKDTVYEGLKYKLSLSFPNNYPYKPPTVKFLTPCFHPNVDLSGNICLDILK 118 (175)
T ss_pred HHHh-cCCCCcccCcCcCceeEEeeEeeCCCCccccCcEEEEEEecCCCCCCCCCeeEeeccccCCCccccccchHHHHH
Confidence 4566 778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCCCcccHHHHHHHHHHhhCCCCCCCcccHHHHHHhhchHHHHHHHHHHHHhh
Q 032505 82 DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNKEDYRKMVQKQYFAG 135 (139)
Q Consensus 82 ~~W~p~~~i~~iL~~i~~ll~~p~~~~p~N~~a~~~~~~~~~f~~~~r~~~~~~ 135 (139)
+.|+..|.+++||++||+||-+||.++|+|..||.++.+.++|++.+.+..++.
T Consensus 119 dKWSa~YdVrTILLSiQSLLGEPNn~SPLNaqAAelW~d~~eykk~l~~~Y~~~ 172 (175)
T KOG0421|consen 119 DKWSAVYDVRTILLSIQSLLGEPNNSSPLNAQAAELWSDQEEYKKYLEALYKEI 172 (175)
T ss_pred HHHHHHHhHHHHHHHHHHHhCCCCCCCcchhHHHHHhcCHHHHHHHHHHHhhcc
Confidence 999999999999999999999999999999999999994499999999887764
No 10
>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....
Probab=100.00 E-value=4.6e-43 Score=247.32 Aligned_cols=130 Identities=49% Similarity=0.857 Sum_probs=119.1
Q ss_pred cccccCCCCCeEEeeCCC-CceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccccCCcccCCCcEeeecC
Q 032505 2 SLMMSGGDLGVSAFPEGE-SIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDIL 80 (139)
Q Consensus 2 ~l~~~~~~~gi~~~p~~~-~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~Hpni~~~G~icl~~l 80 (139)
+|++ +++.|+++.+.++ |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+++||||+.+|.||+++|
T Consensus 8 ~l~~-~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPni~~~G~icl~~l 86 (140)
T PF00179_consen 8 ELQK-NPPPGISVQPSEDDNLFEWHVTIFGPPGTPYEGGIFKFRISFPPDYPFSPPKVRFLTPIFHPNIDENGRICLDIL 86 (140)
T ss_dssp HHHH-SHTTTEEEEEESTTETTEEEEEEEBETTSTTTTSEEEEEEEETTTTTTS--EEEESSS-SBTTB-TTSBBGHGGG
T ss_pred HHhh-CCCCCEEEEECCCCChheEEEEEeccCccceecccccccccccccccccccccccccccccccccccccchhhhh
Confidence 4556 8999999999886 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC-cCCCcccHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHH
Q 032505 81 QD-KWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQY 132 (139)
Q Consensus 81 ~~-~W~p~~~i~~iL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~~r~~~ 132 (139)
.. .|+|++++.+||.+|+++|.+|+.++|+|.+|+++|+++ ++|.++||+|.
T Consensus 87 ~~~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~ 140 (140)
T PF00179_consen 87 NPESWSPSYTIESILLSIQSLLSEPNPEDPLNEEAAELYKNDREEFEKKAREWA 140 (140)
T ss_dssp TTTTC-TTSHHHHHHHHHHHHHHSTCTTSTSSHHHHHHHHHCHHHHHHHHHHH-
T ss_pred hcccCCcccccccHHHHHHHHHhCCCCCCcchHHHHHHHHHCHHHHHHHHHHcC
Confidence 85 599999999999999999999999999999999999999 99999999984
No 11
>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.
Probab=100.00 E-value=4.2e-42 Score=242.75 Aligned_cols=130 Identities=50% Similarity=0.877 Sum_probs=125.4
Q ss_pred cccccCCCCCeEEeeCCCCceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccccCCcccCCCcEeeecCC
Q 032505 2 SLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQ 81 (139)
Q Consensus 2 ~l~~~~~~~gi~~~p~~~~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~Hpni~~~G~icl~~l~ 81 (139)
+|++ ++++|+++.++++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.++++||||+.+|.||++++.
T Consensus 10 ~l~~-~~~~~~~v~~~~~~~~~w~~~i~g~~~t~y~g~~~~~~~~~p~~yP~~pP~v~f~~~i~HpnV~~~G~icl~~l~ 88 (141)
T cd00195 10 DLKK-DPPSGISAEPVEENLLEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPFKPPKVRFVTKIYHPNVDENGKICLSILK 88 (141)
T ss_pred HHHh-CCCCCeEEEECCCChhEEEEEEecCCCCCccCCEEEEEEECCCccCCCCCeEEEeCCcccCCCCCCCCCchhhcC
Confidence 4666 888999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred Cc-CCCcccHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHH
Q 032505 82 DK-WSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQY 132 (139)
Q Consensus 82 ~~-W~p~~~i~~iL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~~r~~~ 132 (139)
.. |+|++++.+||.+|+++|.+|+.++|+|.+||.+|++| ++|.++|++++
T Consensus 89 ~~~W~p~~~l~~il~~i~~~l~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~ 141 (141)
T cd00195 89 THGWSPAYTLRTVLLSLQSLLNEPNPSDPLNAEAAKLYKENREEFKKKAREWT 141 (141)
T ss_pred CCCcCCcCcHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHHHHHhC
Confidence 77 99999999999999999999999999999999999999 99999999874
No 12
>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues. Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.
Probab=100.00 E-value=1.5e-41 Score=240.91 Aligned_cols=134 Identities=51% Similarity=0.883 Sum_probs=128.5
Q ss_pred cccccCCCCCeEEeeCCC-CceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccccCCcccCCCcEeeecC
Q 032505 2 SLMMSGGDLGVSAFPEGE-SIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDIL 80 (139)
Q Consensus 2 ~l~~~~~~~gi~~~p~~~-~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~Hpni~~~G~icl~~l 80 (139)
++++ ++++|+++.+..+ |+++|+++|.||++|||+||+|+++|.||++||++||+|+|.++++||||+++|.||++++
T Consensus 9 ~~~~-~~~~~~~v~~~~~~~~~~w~~~i~gp~~~~y~g~~f~~~l~~p~~yP~~pP~v~f~~~i~Hp~i~~~G~icl~~l 87 (145)
T smart00212 9 ELLK-DPPPGISAYPVDEDNLLEWTGTIVGPPGTPYEGGIFKLTIEFPPDYPFKPPKVKFITKIYHPNVDSSGEICLDIL 87 (145)
T ss_pred HHHh-CCCCCeEEEECCCCChheEEEEEEcCCCCCcCCcEEEEEEECCcccCCCCCEEEEeCCceEeeECCCCCEehhhc
Confidence 4556 8888999999875 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred C-CcCCCcccHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhc
Q 032505 81 Q-DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGE 136 (139)
Q Consensus 81 ~-~~W~p~~~i~~iL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~~r~~~~~~a 136 (139)
. ++|+|++++.+||.+|+++|.+|+.++|+|.+||++|.++ +.|.++|++++++++
T Consensus 88 ~~~~W~p~~~l~~il~~i~~~l~~p~~~~~~n~eaa~~~~~~~~~f~~~~~~~~~k~~ 145 (145)
T smart00212 88 KQEKWSPATTLETVLLSIQSLLSEPNPDSPLNADAATLYKKNREEFKKKAREWTKKYA 145 (145)
T ss_pred CCCCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhC
Confidence 8 8999999999999999999999999999999999999999 999999999999874
No 13
>KOG0426 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-41 Score=231.89 Aligned_cols=133 Identities=35% Similarity=0.670 Sum_probs=127.0
Q ss_pred CcccccCCCCCeEEeeC-CCCceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccccCCcccCCCcEeeec
Q 032505 1 MSLMMSGGDLGVSAFPE-GESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDI 79 (139)
Q Consensus 1 ~~l~~~~~~~gi~~~p~-~~~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~Hpni~~~G~icl~~ 79 (139)
|||.. ++|+||.+.|. ++|+++|.|.|.||++|+|+||+|..++.||.+||.+||+++|...+|||||+.+|+||+++
T Consensus 14 kqLt~-~~P~GIvAgP~~EdnfF~W~cLI~GP~~T~f~~GvfpA~l~FP~DYPLsPPkm~Ftc~~fHPNiy~dG~VCISI 92 (165)
T KOG0426|consen 14 KQLTL-NPPEGIVAGPINEDNFFEWECLIQGPEDTCFEGGVFPARLSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISI 92 (165)
T ss_pred HHHcc-CCCCcceeCCCCccceeeeeeeeeCCCCCcccCCccceeeecCCCCCCCCCceeeecccccCcccCCCeEEEEE
Confidence 46777 99999999996 67999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC-------------CcCCCcccHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHh
Q 032505 80 LQ-------------DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFA 134 (139)
Q Consensus 80 l~-------------~~W~p~~~i~~iL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~~r~~~~~ 134 (139)
|. +.|+|.++++.||+++.+||.+||.++++|.+|+.++++| ++|.+.||..+.+
T Consensus 93 LHaPGDDP~~YEls~ERWSPVQSvEKILLSV~SMLaEPNdESgANvdA~~mWRe~R~ef~~i~~~lvrK 161 (165)
T KOG0426|consen 93 LHAPGDDPMGYELSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDACKMWREDREEFEKIAKRLVRK 161 (165)
T ss_pred eeCCCCCCccchhhhhcCChHHHHHHHHHHHHHHHcCCCcccCcccHHHHHHHHhHHHHHHHHHHHHHH
Confidence 94 5799999999999999999999999999999999999999 9999999998876
No 14
>KOG0416 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.9e-38 Score=223.28 Aligned_cols=129 Identities=33% Similarity=0.591 Sum_probs=122.2
Q ss_pred CCeEEeeCCCCceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccccCCcccC-CCcEeeecCCCcCCCcc
Q 032505 10 LGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQ-YGNICLDILQDKWSSAY 88 (139)
Q Consensus 10 ~gi~~~p~~~~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~Hpni~~-~G~icl~~l~~~W~p~~ 88 (139)
.+..|...++++++++|.+.||.+||||||++++++.+|++||++.|.|.|.++||||||++ +|.||+|.++.-|+|-+
T Consensus 18 s~yeV~~ind~m~ef~V~f~GP~ds~YegGvWkv~V~lPd~YP~KSPSIGFvnKIfHPNIDe~SGsVCLDViNQtWSp~y 97 (189)
T KOG0416|consen 18 SDYEVTIINDGMQEFYVKFHGPKDSPYEGGVWKVRVELPDNYPFKSPSIGFVNKIFHPNIDEASGSVCLDVINQTWSPLY 97 (189)
T ss_pred cCCeEEEecCcccEEEEEeeCCCCCcccCceEEEEEECCCCCCCCCCcccceeeccCCCchhccCccHHHHHhhhhhHHH
Confidence 46667778889999999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred cHHHHHHH-HHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhccC
Q 032505 89 DCRTILLS-IQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEFE 138 (139)
Q Consensus 89 ~i~~iL~~-i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~~r~~~~~~a~~ 138 (139)
.+..|+.. |-.||..||+.+|+|.+||.+|.++ +.|.+++|+++++||.+
T Consensus 98 DL~NIfetfLPQLL~YPNp~DPLN~eAAal~l~~~~~Y~~~v~eY~~kYA~~ 149 (189)
T KOG0416|consen 98 DLVNIFETFLPQLLRYPNPSDPLNGEAAALYLRDPEEYEEKVKEYIKKYATP 149 (189)
T ss_pred HHHHHHHHHhHHHhcCCCCCCCcccHHHHHHhcCHHHHHHHHHHHHHHhcCh
Confidence 99998754 5788999999999999999999999 99999999999999986
No 15
>KOG0420 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.6e-37 Score=217.02 Aligned_cols=131 Identities=32% Similarity=0.579 Sum_probs=119.0
Q ss_pred CCCCCeEEe--eCCCCce--EEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccccCCcccCCCcEeeecCCC
Q 032505 7 GGDLGVSAF--PEGESIF--TWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQD 82 (139)
Q Consensus 7 ~~~~gi~~~--p~~~~~~--~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~Hpni~~~G~icl~~l~~ 82 (139)
+-|++++.. ...+++. +.+++|. |+++.|+||.|.|.+++|+.||+.||+|+|+|+||||||+.+|.||++||++
T Consensus 41 nLp~t~~~s~~~~~~d~~~~~~elti~-PdEGyY~gGkf~F~~~v~~~Yp~~PPKVkCltkV~HPNId~~GnVCLnILRe 119 (184)
T KOG0420|consen 41 NLPPTCSLSFPDSPDDLNNLEFELTIT-PDEGYYQGGKFRFKFKVPNAYPHEPPKVKCLTKVYHPNIDLDGNVCLNILRE 119 (184)
T ss_pred cCCCccccccccCCcccccceEEEEEc-cCcceecCceEEEEEECCCCCCCCCCeeeeeeccccCCcCCcchHHHHHHHh
Confidence 345566532 1234444 5999999 9999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcccHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhccC
Q 032505 83 KWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEFE 138 (139)
Q Consensus 83 ~W~p~~~i~~iL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~~r~~~~~~a~~ 138 (139)
+|+|+.++.+|+..|+.||.+|++++|+|.+||.++++| +.|...||.....++.+
T Consensus 120 dW~P~lnL~sIi~GL~~LF~epn~eDpLN~eAA~~l~~n~e~F~~~Vr~~m~gg~v~ 176 (184)
T KOG0420|consen 120 DWRPVLNLNSIIYGLQFLFLEPNPEDPLNKEAAAVLKSNREGFENNVRRAMSGGCVG 176 (184)
T ss_pred cCccccchHHHHHHHHHHhccCCCcccccHHHHHHHHhCHHHHHHHHHHHHhcCccC
Confidence 999999999999999999999999999999999999999 99999999999988765
No 16
>KOG0422 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-35 Score=204.22 Aligned_cols=124 Identities=28% Similarity=0.612 Sum_probs=118.2
Q ss_pred EeeCCCCceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccccCCcccCCCcEeeecCC-CcCCCcccHHH
Q 032505 14 AFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQ-DKWSSAYDCRT 92 (139)
Q Consensus 14 ~~p~~~~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~Hpni~~~G~icl~~l~-~~W~p~~~i~~ 92 (139)
+..++.|++.|++.|. |.+-||..|.|+++|.||.+|||+||++.|.|+|||||||+.|.+|+.++. ++|.|+.+.++
T Consensus 25 ~~~~e~nll~wt~lli-pd~ppY~kgaF~l~I~fp~eYPFKPP~i~f~tkiYHpNVDe~gqvClPiis~EnWkP~T~teq 103 (153)
T KOG0422|consen 25 IEVDEANLLKWTGLLI-PDKPPYNKGAFRLEIDFPVEYPFKPPKIKFKTKIYHPNVDEKGQVCLPIISAENWKPATRTEQ 103 (153)
T ss_pred hhcccccceeEEeEec-CCCCCccCcceEEEeeCCCCCCCCCCeeeeeeeeccCCCCCCCceeeeeeecccccCcccHHH
Confidence 3345789999999999 999999999999999999999999999999999999999999999999885 89999999999
Q ss_pred HHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhccC
Q 032505 93 ILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEFE 138 (139)
Q Consensus 93 iL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~~r~~~~~~a~~ 138 (139)
||++|.+++.+|+++.|++.|+|..|.+| ..|.++|.++|++|+..
T Consensus 104 VlqaLi~liN~P~pe~plr~dlA~ey~~d~~kF~K~Aee~tkK~~e~ 150 (153)
T KOG0422|consen 104 VLQALIALINDPEPEHPLRIDLAEEYIKDPKKFVKNAEEFTKKYSEK 150 (153)
T ss_pred HHHHHHHHhcCCCccccchhhHHHHHHHCHHHHHHhHHHHHHHhcCc
Confidence 99999999999999999999999999999 99999999999999864
No 17
>KOG0423 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.8e-35 Score=208.74 Aligned_cols=136 Identities=32% Similarity=0.520 Sum_probs=131.1
Q ss_pred cccccCCCCCeEEeeCCCCceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccccCCcccCCCcEeeecCC
Q 032505 2 SLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQ 81 (139)
Q Consensus 2 ~l~~~~~~~gi~~~p~~~~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~Hpni~~~G~icl~~l~ 81 (139)
.|-. +||.||-|.+.++|+....+.|.||.||||++|+|++.+.+..+||.+||+-.|+|+||||||..+|.||.+.|.
T Consensus 21 ~l~~-~PPdGIKV~~NeeD~tdiqa~IeGP~GTPYa~GlFRmKL~L~kDFP~sPPKgYFlTKIFHPNVaaNGEICVNtLK 99 (223)
T KOG0423|consen 21 SLDE-SPPDGIKVVVNEEDFTDIQADIEGPVGTPYANGLFRMKLALSKDFPHSPPKGYFLTKIFHPNVAANGEICVNTLK 99 (223)
T ss_pred hccc-CCCCceEEecChHHhHHHHhhccCCCCCccccceeeehhhhcCCCCCCCCcceeeeeeccCCcccCceehhhhhh
Confidence 3445 899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCCCcccHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhccC
Q 032505 82 DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEFE 138 (139)
Q Consensus 82 ~~W~p~~~i~~iL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~~r~~~~~~a~~ 138 (139)
.+|.|..+|+.||..|+.+|..|++++.+|.+|.+++.++ ++|.++||-+|.-+|..
T Consensus 100 kDW~p~LGirHvLltikCLLI~PnPESALNEeAGkmLLEnYdeYa~rARl~TeIHa~p 157 (223)
T KOG0423|consen 100 KDWNPSLGIRHVLLTIKCLLIEPNPESALNEEAGKMLLENYDEYARRARLYTEIHAKP 157 (223)
T ss_pred cccCcccchhhHhhhhheeeecCChHHHHhHHHHHHHHHhHHHHHHHHHHHHHhhcCC
Confidence 9999999999999999999999999999999999999999 99999999999988764
No 18
>KOG0427 consensus Ubiquitin conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=7.5e-28 Score=164.53 Aligned_cols=107 Identities=34% Similarity=0.649 Sum_probs=98.0
Q ss_pred cccccCCCCCeEEeeCCCCceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccc-cCCcccCCCcEeeecC
Q 032505 2 SLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMC-FHPNVDQYGNICLDIL 80 (139)
Q Consensus 2 ~l~~~~~~~gi~~~p~~~~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i-~Hpni~~~G~icl~~l 80 (139)
+++. +||+|+... ..+|+.+|.+-+.|-+||.|+|.+|.+.++||+.||+..|+|.|..++ .||+|+.+|.||+|+|
T Consensus 26 e~q~-~pP~G~~~~-v~dnlqqWii~v~Ga~GTLYa~e~~qLq~~F~~~YP~esPqVmF~~~~P~HPHiYSNGHICL~iL 103 (161)
T KOG0427|consen 26 EWQN-NPPTGFKHR-VTDNLQQWIIEVTGAPGTLYANETYQLQVEFPEHYPMESPQVMFVGPAPLHPHIYSNGHICLDIL 103 (161)
T ss_pred HHhc-CCCCcceee-cccchheeEEEEecCCceeecCcEEEEEEecCCCCCCCCCeEEEecCCCCCCceecCCeEEEEee
Confidence 4566 999999887 678999999999999999999999999999999999999999999764 7999999999999999
Q ss_pred CCcCCCcccHHHHHHHHHHhhC-CCCCCCcc
Q 032505 81 QDKWSSAYDCRTILLSIQSLLG-EPNPESPL 110 (139)
Q Consensus 81 ~~~W~p~~~i~~iL~~i~~ll~-~p~~~~p~ 110 (139)
.+.|+|++++.+|+++|.+||+ +..-..|.
T Consensus 104 ~d~WsPAmsv~SvClSIlSMLSSs~eKqrP~ 134 (161)
T KOG0427|consen 104 YDSWSPAMSVQSVCLSILSMLSSSKEKQRPT 134 (161)
T ss_pred cccCCcchhhHHHHHHHHHHHccCccccCCC
Confidence 9999999999999999999998 44545554
No 19
>KOG0894 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=1.1e-25 Score=165.40 Aligned_cols=104 Identities=31% Similarity=0.523 Sum_probs=92.1
Q ss_pred cccccCCCCCeEEeeCCCCceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccccCCcccCCCcEeeecCC
Q 032505 2 SLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQ 81 (139)
Q Consensus 2 ~l~~~~~~~gi~~~p~~~~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~Hpni~~~G~icl~~l~ 81 (139)
.|++ +|.++|.+.|..+|+++||.+|.||+||||+||.|+.+|.||++||++||.|+++|+-. .+-.+-++|+++..
T Consensus 16 ~l~k-~Pv~~i~A~P~p~nILEWHYvl~GpedTPy~GG~YhGkl~FP~eyP~KPPaI~MiTPNG--RFktntRLCLSiSD 92 (244)
T KOG0894|consen 16 ALCK-DPVPYIVARPNPNNILEWHYVLRGPEDTPYYGGYYHGKLIFPPEYPFKPPAITMITPNG--RFKTNTRLCLSISD 92 (244)
T ss_pred HHHh-CCchhhccCCCccceeeeEEEeeCCCCCCccCceeeeEEeCCCCCCCCCCeeEEECCCC--ceecCceEEEeccc
Confidence 5677 99999999999999999999999999999999999999999999999999999998632 22235689998874
Q ss_pred ---CcCCCcccHHHHHHHHHHhhCC--CCCCC
Q 032505 82 ---DKWSSAYDCRTILLSIQSLLGE--PNPES 108 (139)
Q Consensus 82 ---~~W~p~~~i~~iL~~i~~ll~~--p~~~~ 108 (139)
+.|+|++++.+||..|.++|.+ |...+
T Consensus 93 fHPdsWNP~WsVStILtGLlSFM~e~~pTtGS 124 (244)
T KOG0894|consen 93 FHPDSWNPGWSVSTILTGLLSFMTEDSPTTGS 124 (244)
T ss_pred cCcCcCCCcccHHHHHHHHHHHHhcCCCccCc
Confidence 8899999999999999999984 55444
No 20
>KOG0429 consensus Ubiquitin-conjugating enzyme-related protein Ft1, involved in programmed cell death [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=7.3e-24 Score=156.21 Aligned_cols=128 Identities=25% Similarity=0.437 Sum_probs=118.0
Q ss_pred CCCCCeEEeeCCCCceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCC--CCCeeEEeccccCCcccC-CCcEeeecCCCc
Q 032505 7 GGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPF--KPPQVKFETMCFHPNVDQ-YGNICLDILQDK 83 (139)
Q Consensus 7 ~~~~gi~~~p~~~~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~--~pP~v~f~t~i~Hpni~~-~G~icl~~l~~~ 83 (139)
.+.+||+|.|+-.|-+.|-++|++..| +|.||+|+|+|.+|++||. .-|+|.|.+.++||+|.+ ++.+|++-....
T Consensus 34 ekL~gIyviPSyan~l~WFGViFvr~G-iyaggVFRFtIliPdnfPdd~dlPrvvF~q~vfHP~icp~skeLdl~raf~e 112 (258)
T KOG0429|consen 34 EKLDGIYVIPSYANKLLWFGVIFVRKG-IYAGGVFRFTILIPDNFPDDSDLPRVVFEQSVFHPLICPKSKELDLNRAFPE 112 (258)
T ss_pred ccCCceEEcccccccceEEEEEEEecc-cccCceEEEEEEcCccCCCcCCCCeEEeeccccccccCCCccceeHhhhhhh
Confidence 778899999999999999999997665 8999999999999999995 789999999999999999 999999877677
Q ss_pred CCCc-ccHHHHHHHHHHhhCCCCCCCc-c-cHHHHHHhhch-HHHHHHHHHHHHhh
Q 032505 84 WSSA-YDCRTILLSIQSLLGEPNPESP-L-NSYAAALLNNK-EDYRKMVQKQYFAG 135 (139)
Q Consensus 84 W~p~-~~i~~iL~~i~~ll~~p~~~~p-~-N~~a~~~~~~~-~~f~~~~r~~~~~~ 135 (139)
|.-. .+|..+|..||.+|++|+.+.+ + |++|+.+|.++ ++|.++|+++++..
T Consensus 113 WRk~ehhiwqvL~ylqriF~dpd~si~kl~N~eAa~l~~k~r~ef~~rvqe~vk~s 168 (258)
T KOG0429|consen 113 WRKEEHHIWQVLVYLQRIFYDPDVSIDKLINPEAAVLYKKHRDEFRERVQECVKAS 168 (258)
T ss_pred hhccccHHHHHHHHHHHHhcCcccchhhhcChHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 9766 5999999999999999998877 4 99999999999 99999999999864
No 21
>KOG0428 consensus Non-canonical ubiquitin conjugating enzyme 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=6e-20 Score=137.60 Aligned_cols=97 Identities=30% Similarity=0.533 Sum_probs=86.6
Q ss_pred CCCCCeEEeeCCCCceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccccCCcccCCCcEeeecCC---Cc
Q 032505 7 GGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQ---DK 83 (139)
Q Consensus 7 ~~~~gi~~~p~~~~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~Hpni~~~G~icl~~l~---~~ 83 (139)
+|...+.+.|.+||+++|+.+|+||.||-||||+|+.+|.||.+||++||.+..+|+-. .+.-+-+||+++.. +.
T Consensus 25 ~Ptd~yha~plEdNlFEWhFtiRGp~dtdFeGGiYHGRI~lPadYPmKPPs~iLLTpNG--RFE~nkKiCLSISgyHPEt 102 (314)
T KOG0428|consen 25 DPTDHYHAQPLEDNLFEWHFTIRGPPDTDFEGGIYHGRIVLPADYPMKPPSIILLTPNG--RFEVNKKICLSISGYHPET 102 (314)
T ss_pred CchhhhhhccchhceeeEEEEeeCCCCCCccCceeeeeEecCCCCCCCCCeEEEEcCCC--ceeeCceEEEEecCCCccc
Confidence 78888899999999999999999999999999999999999999999999999988643 33346789999885 78
Q ss_pred CCCcccHHHHHHHHHHhhC-CCC
Q 032505 84 WSSAYDCRTILLSIQSLLG-EPN 105 (139)
Q Consensus 84 W~p~~~i~~iL~~i~~ll~-~p~ 105 (139)
|.|+++|++.|.+|..+|- .|+
T Consensus 103 WqPSWSiRTALlAlIgFmPt~p~ 125 (314)
T KOG0428|consen 103 WQPSWSIRTALLALIGFMPTKPE 125 (314)
T ss_pred cCcchhHHHHHHHHHccccCCCC
Confidence 9999999999999999986 444
No 22
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=2.8e-17 Score=142.64 Aligned_cols=96 Identities=27% Similarity=0.505 Sum_probs=90.6
Q ss_pred CCCCCeEEeeCCCCceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecc--ccCCcccCCCcEeeecCC---
Q 032505 7 GGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETM--CFHPNVDQYGNICLDILQ--- 81 (139)
Q Consensus 7 ~~~~gi~~~p~~~~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~--i~Hpni~~~G~icl~~l~--- 81 (139)
+.|.||.|...++.+.-..++|.|+.||||..|+|.|.+.||.+||.+||.+...+. .++||.+++|+||+++|+
T Consensus 866 ~~~~~~~vr~~e~r~d~~~~~~~g~~~tpy~~~~f~fd~~~~~~yp~~pp~~~~~s~~~r~npnly~~g~vc~s~l~tw~ 945 (1101)
T KOG0895|consen 866 SLPSGIFVRAYEDRMDLLRAVIVGAAGTPYQDGLFFFDFQFPQDYPSSPPLVHYHSGGVRLNPNLYEDGKVCLSLLNTWH 945 (1101)
T ss_pred cCCCceEEEechHHHHHHHHHhhCCCCCccccceEEEEeecCCCCCCCCCceEeecCceeeCcccccccceehhhhcccc
Confidence 778899999999999999999999999999999999999999999999999999874 689999999999999995
Q ss_pred ----CcCCCcccHHHHHHHHHHhhC
Q 032505 82 ----DKWSSAYDCRTILLSIQSLLG 102 (139)
Q Consensus 82 ----~~W~p~~~i~~iL~~i~~ll~ 102 (139)
+-|+|+.++.++|.+||.|..
T Consensus 946 g~~~e~w~~~s~~lq~l~s~q~l~l 970 (1101)
T KOG0895|consen 946 GRGNEVWNPSSSILQVLVSIQGLVL 970 (1101)
T ss_pred CCCccccCcchhHHHHHHHhhhhhc
Confidence 569999999999999999987
No 23
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=1.6e-14 Score=125.68 Aligned_cols=98 Identities=30% Similarity=0.486 Sum_probs=91.9
Q ss_pred cCCCCCeEEeeCCCCceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecc---ccCCcccCCCcEeeecCC-
Q 032505 6 SGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETM---CFHPNVDQYGNICLDILQ- 81 (139)
Q Consensus 6 ~~~~~gi~~~p~~~~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~---i~Hpni~~~G~icl~~l~- 81 (139)
++.++|+.+.|.+.++...++.|.||.||||++|+|.|.|.||..||..||.+.+++. .+.||.+.+|+||+++|.
T Consensus 296 kdlpEgifvrp~e~RMd~I~alIig~~gtPy~~glf~Fdiq~P~~yPa~pp~v~~lt~~~~R~nPNlYn~GKVcLslLgT 375 (1101)
T KOG0895|consen 296 KDLPEGIFVRPDEGRMDLIKALIIGPDGTPYADGLFLFDIQFPDTYPAVPPHVKYLTGGGVRLNPNLYNDGKVCLSLLGT 375 (1101)
T ss_pred ccCCCCccccccccccceeeeEEecCCCCCCcCCceeeEeecCCCCCCCCceeEEeeccceeecCCcccCceEEeeeeee
Confidence 3889999999999999999999999999999999999999999999999999999976 789999999999999883
Q ss_pred ------CcCCCc-ccHHHHHHHHHHhhCC
Q 032505 82 ------DKWSSA-YDCRTILLSIQSLLGE 103 (139)
Q Consensus 82 ------~~W~p~-~~i~~iL~~i~~ll~~ 103 (139)
+.|+|. .++.++|.+||.++.+
T Consensus 376 wtg~~~e~wtp~~~sl~qvL~sIQ~Li~~ 404 (1101)
T KOG0895|consen 376 WTGSRREKWTPNGSSLLQVLESIQGLILN 404 (1101)
T ss_pred cccccccCCCccccchhhhhhhhhhhhcc
Confidence 679998 7999999999999973
No 24
>KOG0896 consensus Ubiquitin-conjugating enzyme E2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=8.8e-14 Score=95.79 Aligned_cols=83 Identities=28% Similarity=0.488 Sum_probs=73.4
Q ss_pred CceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccccCCcccC-CCcEeeecC--CCcCCCcccHHHHHHH
Q 032505 20 SIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQ-YGNICLDIL--QDKWSSAYDCRTILLS 96 (139)
Q Consensus 20 ~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~Hpni~~-~G~icl~~l--~~~W~p~~~i~~iL~~ 96 (139)
.+..|..+|.||+.|+||+.+|.++|...++||..||+|+|.+++--+.|+. +|.|.-.-+ -.+|+..+++..+|..
T Consensus 37 tl~rWtg~IiGPprT~yEnRiysLKI~Cgp~YPe~PP~vrf~tkinm~gvn~~~g~Vd~~~i~~L~~W~~~y~~~~vl~~ 116 (138)
T KOG0896|consen 37 TLTRWTGTIIGPPRTMYENRIYSLKIECGPKYPELPPTVRFGTKINMNGVNSSNGVVDPRDITVLARWQRSYSIKMVLGQ 116 (138)
T ss_pred eEeeeccceeCCCCcccccceeeEEEecCCCCCCCCceeEEEEEeeecccccCCCccCccccchhhcccccchhhHHHHh
Confidence 3568999999999999999999999999999999999999999999999888 677753222 2799999999999999
Q ss_pred HHHhhC
Q 032505 97 IQSLLG 102 (139)
Q Consensus 97 i~~ll~ 102 (139)
++.++.
T Consensus 117 lr~~m~ 122 (138)
T KOG0896|consen 117 LRKEMM 122 (138)
T ss_pred hhHHHH
Confidence 987665
No 25
>PF14461 Prok-E2_B: Prokaryotic E2 family B
Probab=98.65 E-value=1.3e-07 Score=66.19 Aligned_cols=66 Identities=32% Similarity=0.602 Sum_probs=60.1
Q ss_pred CCcEEEEEEEcCCCCCCCCCeeEEeccc---cCCcccCCCcEee---ecCCCcCCCcccHHHHHHHHHHhhC
Q 032505 37 EGLSYKLSLRFPLDYPFKPPQVKFETMC---FHPNVDQYGNICL---DILQDKWSSAYDCRTILLSIQSLLG 102 (139)
Q Consensus 37 egg~f~~~i~f~~~YP~~pP~v~f~t~i---~Hpni~~~G~icl---~~l~~~W~p~~~i~~iL~~i~~ll~ 102 (139)
.|+.+.++|.+|+.||..||.|....+. +-|||+.+|.+|+ ...-+.|.|...+..+|...+.+|.
T Consensus 34 ~~~~~~l~l~~p~~FP~~pp~v~l~d~~~~~~~pHv~~~G~LCl~~~~~~~D~~~P~~~~~~~l~~a~~lL~ 105 (133)
T PF14461_consen 34 GGGPFPLRLVFPDDFPYLPPRVYLEDPKQFPLLPHVESDGKLCLLDEELVLDPWDPEGIIADCLERAIRLLE 105 (133)
T ss_pred CCeEEEEEEEECCcccCcCCEEEecCccccCccCeEcCCCeEEEecCCcccCccCHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999887544 6899999999999 6777899999999999999999998
No 26
>KOG0897 consensus Predicted ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=1.7e-07 Score=63.18 Aligned_cols=89 Identities=26% Similarity=0.451 Sum_probs=64.3
Q ss_pred EEEEEEcCCCCCCCCCeeEEecccc-CCcccCCCcEeeecCC-CcCCCcccHHHHHHHHHHhhCCC--CCCCcccHHHHH
Q 032505 41 YKLSLRFPLDYPFKPPQVKFETMCF-HPNVDQYGNICLDILQ-DKWSSAYDCRTILLSIQSLLGEP--NPESPLNSYAAA 116 (139)
Q Consensus 41 f~~~i~f~~~YP~~pP~v~f~t~i~-Hpni~~~G~icl~~l~-~~W~p~~~i~~iL~~i~~ll~~p--~~~~p~N~~a~~ 116 (139)
.-+.+.|+++||+.||.++-..++- ---|-++|.||+.++. ++|+.+++|+.++++|...+-.- ....+++.+..
T Consensus 13 ill~~~f~~~fp~~ppf~rvv~p~~~~Gyvl~ggAIcmellt~qgwssay~Ve~vi~qiaatlVkG~~ri~~~a~k~sk- 91 (122)
T KOG0897|consen 13 ILLLDIFDDNFPFMPPFPRVVKPLEDEGYVLEGGAICMELLTKQGWSSAYEVERVIMQIAATLVKGGARIEFPAEKSSK- 91 (122)
T ss_pred eEeeeecccCCCCCCCcceeeeecccCCEEecchhhHHHHHccccccchhhHHHHHHHHHHHhhccceeEecCcchhhh-
Confidence 3466789999999999998765533 2334458999999984 78999999999999999999854 45566665544
Q ss_pred Hhhch---HHHHHHHHH
Q 032505 117 LLNNK---EDYRKMVQK 130 (139)
Q Consensus 117 ~~~~~---~~f~~~~r~ 130 (139)
+|... +.|+..++-
T Consensus 92 ~~s~~qa~~sfksLv~~ 108 (122)
T KOG0897|consen 92 LYSHSQAQQSFKSLVQI 108 (122)
T ss_pred HhhHHHHHHHHHHHHHH
Confidence 44332 555555443
No 27
>PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub). Nevertheless, at least some UEVs have retained the ability to bind Ub, and appear to act either as cofactors in ubiquitylation reactions, or as ubiquitin sensors. UEV domains also frequently contain other protein recognition motifs, and may generally serve to couple protein and Ub binding functions to facilitate the formation of multiprotein complexes [, , , ]. The UEV domain consists of a twisted four-stranded antiparallel beta-sheet having a meander topology, with four alpha-helices packed against one face of the sheet. The UEV fold is generally similar to canonical E2 ligases in the hydrophobic core and 'active site' regions, but differs significantly at both its N- and C-termini [, ]. The UEV domain is found in the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other Homo sapiens malignancies. However, the involvement of this gene in neoplastic transformation and tumourigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but this gene is not a tumour suppressor for sporadic forms of breast cancer [].; GO: 0006464 protein modification process, 0015031 protein transport; PDB: 3R3Q_A 3R42_A 1UZX_A 3OBX_A 3OBS_A 3P9H_A 2F0R_A 3P9G_A 3OBQ_A 3OBU_A ....
Probab=98.46 E-value=5.9e-07 Score=61.95 Aligned_cols=77 Identities=25% Similarity=0.563 Sum_probs=53.4
Q ss_pred ceEEEEEEecCCCCCCCCcEE--EEEEEcCCCCCCCCCeeEEeccc-----cCCcccCCCcEeeecCCCcCCC-cccHHH
Q 032505 21 IFTWIGTIEGGKGTMYEGLSY--KLSLRFPLDYPFKPPQVKFETMC-----FHPNVDQYGNICLDILQDKWSS-AYDCRT 92 (139)
Q Consensus 21 ~~~w~~~i~Gp~~t~yegg~f--~~~i~f~~~YP~~pP~v~f~t~i-----~Hpni~~~G~icl~~l~~~W~p-~~~i~~ 92 (139)
+....++|. -.|+|..| .+.|.+|.+||.+||.+...... -+.+|+.+|+|.+..| .+|.+ ..++.+
T Consensus 32 LL~L~Gtip----i~y~g~~y~iPi~Iwlp~~yP~~pP~v~v~pt~~m~I~~~~~Vd~~G~v~~pyL-~~W~~~~s~L~~ 106 (121)
T PF05743_consen 32 LLCLYGTIP----ITYKGSTYNIPICIWLPENYPYSPPIVYVRPTPSMVIKPSHHVDSNGRVYLPYL-QNWNPPSSNLVD 106 (121)
T ss_dssp EEEEEEEEE----ECCTTCCEEEEEEEEE-TTTTTSSSEEEE-GCCTECCGGCCCB-TTSBB-SHHH-HT--TTTS-HHH
T ss_pred EEEEecCcc----cccCCcccceeEEEEEcccCCCCCCEEEEeCCCCCCcCCCCeECCCCCEeCchh-ccCCCCCCCHHH
Confidence 444455553 34778777 56777899999999999776432 1449999999999888 67887 779999
Q ss_pred HHHHHHHhhC
Q 032505 93 ILLSIQSLLG 102 (139)
Q Consensus 93 iL~~i~~ll~ 102 (139)
++..|++.|.
T Consensus 107 lv~~l~~~F~ 116 (121)
T PF05743_consen 107 LVQELQAVFS 116 (121)
T ss_dssp HHHHHHHCCC
T ss_pred HHHHHHHHHh
Confidence 9999998886
No 28
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.08 E-value=0.0032 Score=50.16 Aligned_cols=74 Identities=23% Similarity=0.500 Sum_probs=57.2
Q ss_pred ecCCCCCCCCcEEE--EEEEcCCCCCCCCCeeEEecc-----ccCCcccCCCcEeeecCCCcCC-CcccHHHHHHHHHHh
Q 032505 29 EGGKGTMYEGLSYK--LSLRFPLDYPFKPPQVKFETM-----CFHPNVDQYGNICLDILQDKWS-SAYDCRTILLSIQSL 100 (139)
Q Consensus 29 ~Gp~~t~yegg~f~--~~i~f~~~YP~~pP~v~f~t~-----i~Hpni~~~G~icl~~l~~~W~-p~~~i~~iL~~i~~l 100 (139)
.|---.+|.|.+|. +.|.+.+.||..||.+..... -.|-+|+.+|.|.+..| -+|. |+..+..++..|.+.
T Consensus 56 ~GTIp~~~~G~tYnIPV~iWlldtyP~~pP~c~VnPT~~M~ik~~~hVd~nG~V~LPYL-h~W~~pssdLv~Liq~l~a~ 134 (365)
T KOG2391|consen 56 DGTIPVPYQGVTYNIPVIIWLLDTYPYYPPICYVNPTSTMIIKVHEHVDPNGKVYLPYL-HNWDPPSSDLVGLIQELIAA 134 (365)
T ss_pred cCcccccccCCcccceEEEEecccCCCCCCeEEecCCchhhhHHhhccCCCCeEechhh-ccCCCccchHHHHHHHHHHH
Confidence 33334567777765 566789999999999866531 13899999999999999 5687 556888899888888
Q ss_pred hCC
Q 032505 101 LGE 103 (139)
Q Consensus 101 l~~ 103 (139)
|.+
T Consensus 135 f~~ 137 (365)
T KOG2391|consen 135 FSE 137 (365)
T ss_pred hcC
Confidence 874
No 29
>PF14462 Prok-E2_E: Prokaryotic E2 family E
Probab=96.38 E-value=0.044 Score=37.81 Aligned_cols=91 Identities=20% Similarity=0.274 Sum_probs=59.1
Q ss_pred CeEEeeCCCCceEEEEEEec--CCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccccC-------CcccC-----CCcEe
Q 032505 11 GVSAFPEGESIFTWIGTIEG--GKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFH-------PNVDQ-----YGNIC 76 (139)
Q Consensus 11 gi~~~p~~~~~~~w~~~i~G--p~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~H-------pni~~-----~G~ic 76 (139)
|+..+...+.-..|-+ |.| -+.+.|.+..-.+-|.+|..||..+|-+.+..+-.. ||=.+ .|+.-
T Consensus 13 g~~~E~v~eg~~~~li-i~~~~LP~G~y~~~~~dili~iP~gYP~~~~DmfY~~P~L~~~~G~~iP~~~~~~~~~~G~~w 91 (122)
T PF14462_consen 13 GLRWETVTEGGRRWLI-IKGYPLPEGKYNHNEVDILILIPPGYPDAPLDMFYVYPPLKLADGGPIPNAAEVTQTFDGRTW 91 (122)
T ss_pred CceEEEEEeCCccEEE-EeCCcCCCCccCccceEEEEECCCCCCCCCCCcEEECCceEccCCCcCCchhcchhhcCCeee
Confidence 5566655555566755 665 455579999999999999999999998766654221 11100 22211
Q ss_pred --eecCCCcCCCcc-cHHHHHHHHHHhhC
Q 032505 77 --LDILQDKWSSAY-DCRTILLSIQSLLG 102 (139)
Q Consensus 77 --l~~l~~~W~p~~-~i~~iL~~i~~ll~ 102 (139)
.+.-...|.|+. +|.+.|..|...|.
T Consensus 92 QrWSRH~~~W~P~~D~l~T~l~~v~~~L~ 120 (122)
T PF14462_consen 92 QRWSRHNNPWRPGVDDLWTHLARVEHALA 120 (122)
T ss_pred eeecCCCCCCCCCCCcHHHHHHHHHHHHh
Confidence 111135688887 88888888887764
No 30
>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO). ; GO: 0005515 protein binding; PDB: 2EBM_A 2EBK_A 2DAX_A 2DAW_A 2DAY_A 2DMF_A 1UKX_A 2YZ0_A.
Probab=95.18 E-value=0.075 Score=34.97 Aligned_cols=46 Identities=20% Similarity=0.188 Sum_probs=28.3
Q ss_pred CceEEEEEEe--cCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecccc
Q 032505 20 SIFTWIGTIE--GGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCF 65 (139)
Q Consensus 20 ~~~~w~~~i~--Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~ 65 (139)
+...+.+.+. ....+.-....+.+.+.||++||..+|.+...+...
T Consensus 28 ~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~p~~YP~~~P~i~l~~~~~ 75 (113)
T PF05773_consen 28 SPPSLEVKLDESSSSFESSSFPSVTLHFTLPPGYPESPPKISLESPKN 75 (113)
T ss_dssp SSEEEEEEE--CEECCTTTTSEEEEEEEEE-SSTTSS--EEEEEEESS
T ss_pred CCCceeeeecccccccccccceeEEEEEeCCCcCCCcCCEEEEEcCCC
Confidence 3445555562 123333445689999999999999999998765433
No 31
>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain.
Probab=95.06 E-value=0.55 Score=30.50 Aligned_cols=25 Identities=24% Similarity=0.541 Sum_probs=21.6
Q ss_pred CcEEEEEEEcCCCCCCCCCeeEEec
Q 032505 38 GLSYKLSLRFPLDYPFKPPQVKFET 62 (139)
Q Consensus 38 gg~f~~~i~f~~~YP~~pP~v~f~t 62 (139)
.-.+.+.+.||++||..+|.+.+.+
T Consensus 40 ~~~~~l~~~~p~~YP~~~P~i~~~~ 64 (107)
T smart00591 40 YVSLTLQVKLPENYPDEAPPISLLN 64 (107)
T ss_pred ceEEEEEEECCCCCCCCCCCeEEEC
Confidence 4568899999999999999998765
No 32
>PF14457 Prok-E2_A: Prokaryotic E2 family A
Probab=94.66 E-value=0.068 Score=38.63 Aligned_cols=60 Identities=22% Similarity=0.368 Sum_probs=47.0
Q ss_pred EEEEcCCCCCCCCCeeEEecccc---CCcccCC-----CcEeeecC-CCcCCCcccHHHHHHHHHHhhC
Q 032505 43 LSLRFPLDYPFKPPQVKFETMCF---HPNVDQY-----GNICLDIL-QDKWSSAYDCRTILLSIQSLLG 102 (139)
Q Consensus 43 ~~i~f~~~YP~~pP~v~f~t~i~---Hpni~~~-----G~icl~~l-~~~W~p~~~i~~iL~~i~~ll~ 102 (139)
+.|.|+.+||..+|.|.++-+.| +|++... ..+|+--- -..|.+..++..+|..|..-|.
T Consensus 57 ~~i~~~~~~~~~~P~v~~lR~dFP~~lpH~~~~~~~~p~~lCl~~~~~~e~~~~~g~~~~l~rl~~Wl~ 125 (162)
T PF14457_consen 57 VAIVFPPDSPLSAPEVPALRKDFPGNLPHQNPGPEGEPVSLCLYEGPWSEWRPSWGPEGFLDRLFDWLR 125 (162)
T ss_pred EEEEecCCCCCCCccchhhHhhCCCCCCccCCCCCCCCccceEecCCHHHhhhccCHHHHHHHHHHHHH
Confidence 56889999999999877765433 4666664 67898433 2579999999999999999886
No 33
>PF08694 UFC1: Ubiquitin-fold modifier-conjugating enzyme 1; InterPro: IPR014806 Ubiquitin-like (UBL) post-translational modifiers are covalently linked to most, if not all, target protein(s) through an enzymatic cascade analogous to ubiquitylation, consisting of E1 (activating), E2 (conjugating), and E3 (ligating) enzymes. Ubiquitin-fold modifier 1 (Ufm1) a ubiquitin-like protein is activated by a novel E1-like enzyme, Uba5, by forming a high-energy thioester bond. Activated Ufm1 is then transferred to its cognate E2-like enzyme, Ufc1, in a similar thioester linkage. This family represents the E2-like enzyme [].; PDB: 2Z6P_A 2K07_A 2Z6O_A 3EVX_D 3KPA_A.
Probab=93.76 E-value=0.07 Score=37.71 Aligned_cols=53 Identities=19% Similarity=0.453 Sum_probs=23.3
Q ss_pred EEEEEEcCCCCCCCCCeeEEecccc-CCcccCCCcEeeecCC-CcC---CCcccHHHH
Q 032505 41 YKLSLRFPLDYPFKPPQVKFETMCF-HPNVDQYGNICLDILQ-DKW---SSAYDCRTI 93 (139)
Q Consensus 41 f~~~i~f~~~YP~~pP~v~f~t~i~-Hpni~~~G~icl~~l~-~~W---~p~~~i~~i 93 (139)
|.+++.+|..||..||.+..-.--. -.-.+..|+||++.-. .-| .|.++|...
T Consensus 77 F~~eFdIP~tYP~t~pEi~lPeLdGKTaKMYRGGkIClt~HFkPLWakN~PkfGIaHa 134 (161)
T PF08694_consen 77 FDLEFDIPVTYPTTAPEIALPELDGKTAKMYRGGKICLTDHFKPLWAKNVPKFGIAHA 134 (161)
T ss_dssp EEEEEE--TTTTTS----B-GGGTTT-SSBCCCCBB---TTHHHHHHCTTTT--HHHH
T ss_pred EeeecCCCccCCCCCcceeccccCCchhhhhcCceEeeecccchhhhhcCCchhHHHH
Confidence 4556667999999999997643110 1123358999997653 335 455666554
No 34
>PF14460 Prok-E2_D: Prokaryotic E2 family D
Probab=74.03 E-value=5 Score=29.13 Aligned_cols=34 Identities=12% Similarity=0.072 Sum_probs=22.5
Q ss_pred CcccCCCcEeeecCCCcCCCcccHHHHHHHHHHhhCC
Q 032505 67 PNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGE 103 (139)
Q Consensus 67 pni~~~G~icl~~l~~~W~p~~~i~~iL~~i~~ll~~ 103 (139)
+||+.+|.||..... .|.......+..+.+.|.+
T Consensus 98 ~NV~~~g~vC~G~~~---~P~~~~~~~i~~we~~Ff~ 131 (175)
T PF14460_consen 98 FNVYSNGSVCWGNNS---LPKISTLASIEAWEDAFFN 131 (175)
T ss_pred cccCCCCcEeeCCCc---CCCccCHHHHHHHHHHHhC
Confidence 699999999986532 2444445557777655553
No 35
>TIGR03737 PRTRC_B PRTRC system protein B. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This protein family is designated protein B.
Probab=71.58 E-value=7.2 Score=29.80 Aligned_cols=38 Identities=13% Similarity=0.065 Sum_probs=26.2
Q ss_pred CcccCCCcEeeecCCCcCCCcc-cHHHHHHHHHHhhCCCCCCC
Q 032505 67 PNVDQYGNICLDILQDKWSSAY-DCRTILLSIQSLLGEPNPES 108 (139)
Q Consensus 67 pni~~~G~icl~~l~~~W~p~~-~i~~iL~~i~~ll~~p~~~~ 108 (139)
.||+++|.||+.... .|.. ++.+ +....+.|.+-.+.+
T Consensus 139 fNV~~~G~VC~G~~~---~P~~~~~~~-i~~we~~FF~S~FTH 177 (228)
T TIGR03737 139 FNVWSNGEICAGNAR---LPDRPTVAN-ISAWEDAFFSSRFTH 177 (228)
T ss_pred CccCCCCeEeeCCCc---CCCCcCHHH-HHHHHHHHhCCcccC
Confidence 499999999986553 4444 5666 888888877544433
No 36
>KOG3357 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.54 E-value=11 Score=26.38 Aligned_cols=65 Identities=22% Similarity=0.550 Sum_probs=39.4
Q ss_pred EEEEEEecCCCCCCCCcE----------EEEEEEcCCCCCCCCCeeEEecccc-CCcccCCCcEee-ecCCCcCCCc
Q 032505 23 TWIGTIEGGKGTMYEGLS----------YKLSLRFPLDYPFKPPQVKFETMCF-HPNVDQYGNICL-DILQDKWSSA 87 (139)
Q Consensus 23 ~w~~~i~Gp~~t~yegg~----------f~~~i~f~~~YP~~pP~v~f~t~i~-Hpni~~~G~icl-~~l~~~W~p~ 87 (139)
.|.-.=.-++||-|-|.+ |.+++.+|-.||..+|.+..-.--. ---.+..|.||+ +-++.-|...
T Consensus 52 dwfrlesn~egtrwfgkcwy~hnllkyefdvefdipityp~tapeialpeldgktakmyrggkiclt~hfkplwarn 128 (167)
T KOG3357|consen 52 DWFRLESNKEGTRWFGKCWYVHNLLKYEFDVEFDIPITYPTTAPEIALPELDGKTAKMYRGGKICLTDHFKPLWARN 128 (167)
T ss_pred cceEeccCccccceehhhhHhhhhhhheeeeeeccccccCCCCccccccccCchhhhhhcCceEeeccccchhhhhc
Confidence 343333557888887743 4455566999999999986532100 112234799998 4445567544
No 37
>KOG4018 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=71.24 E-value=3.9 Score=30.84 Aligned_cols=19 Identities=26% Similarity=0.579 Sum_probs=18.2
Q ss_pred EEEEEEEcCCCCCCCCCee
Q 032505 40 SYKLSLRFPLDYPFKPPQV 58 (139)
Q Consensus 40 ~f~~~i~f~~~YP~~pP~v 58 (139)
.+.+.+.++++||..+|-+
T Consensus 50 ~~~l~~s~tEnYPDe~Pli 68 (215)
T KOG4018|consen 50 SFILVFSLTENYPDEAPLI 68 (215)
T ss_pred cEEEEEEccCCCCCCCcce
Confidence 7889999999999999999
No 38
>KOG0177 consensus 20S proteasome, regulatory subunit beta type PSMB2/PRE1 [Posttranslational modification, protein turnover, chaperones]
Probab=68.55 E-value=9.4 Score=28.38 Aligned_cols=31 Identities=16% Similarity=0.205 Sum_probs=26.3
Q ss_pred CCcEeeecCCCcCCCcccHHHHHHHHHHhhC
Q 032505 72 YGNICLDILQDKWSSAYDCRTILLSIQSLLG 102 (139)
Q Consensus 72 ~G~icl~~l~~~W~p~~~i~~iL~~i~~ll~ 102 (139)
.+..|++++.+.|+|.+|+++.+.-++.++.
T Consensus 135 ~~~f~~sIlDr~Y~pdmt~eea~~lmkKCv~ 165 (200)
T KOG0177|consen 135 GSYFCLSILDRYYKPDMTIEEALDLMKKCVL 165 (200)
T ss_pred hhhhhHHHHHhhhCCCCCHHHHHHHHHHHHH
Confidence 5679999999999999999988877776654
No 39
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=65.82 E-value=20 Score=28.91 Aligned_cols=42 Identities=29% Similarity=0.361 Sum_probs=33.7
Q ss_pred ceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEe-ccccCCc
Q 032505 21 IFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFE-TMCFHPN 68 (139)
Q Consensus 21 ~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~-t~i~Hpn 68 (139)
...+++.| ||.|-..+-+|.|...||..||-+.|. ..-|+|.
T Consensus 53 ~DRF~l~I------Py~~~~l~W~viFd~~~p~~pPDfiF~eD~~F~pd 95 (333)
T PF06113_consen 53 CDRFKLLI------PYCGEYLKWDVIFDAQYPEFPPDFIFGEDDNFLPD 95 (333)
T ss_pred cceEEEEe------eccCCEEEEEEEEcCCCCCCCCCEEeCCCcCcCCC
Confidence 33455555 589999999999999999999999996 3458874
No 40
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=63.01 E-value=27 Score=31.53 Aligned_cols=40 Identities=18% Similarity=0.434 Sum_probs=27.7
Q ss_pred eEEEEEEecCCCCCCCCc-EEEEEEEcCCCCCC-CCCeeEEec
Q 032505 22 FTWIGTIEGGKGTMYEGL-SYKLSLRFPLDYPF-KPPQVKFET 62 (139)
Q Consensus 22 ~~w~~~i~Gp~~t~yegg-~f~~~i~f~~~YP~-~pP~v~f~t 62 (139)
..-.+.+.||---- .|- ..++.|.||.+||. .+|++.|..
T Consensus 449 Rsctvsln~p~~~~-d~y~flrm~V~FP~nYPn~a~P~Fq~e~ 490 (1081)
T KOG0309|consen 449 RSCTVSLNCPNHRV-DDYIFLRMLVKFPANYPNNAAPSFQFEN 490 (1081)
T ss_pred ceEEEEecCCCCcc-ccceeEEEEEeccccCCCCCCCceEEec
Confidence 34556666665432 333 34788999999999 678998874
No 41
>PF09765 WD-3: WD-repeat region; InterPro: IPR019162 This entry represents a region of approximately 100 residues containing three WD repeats and six cysteine residues- possibly as three cysteine-bridges associated with FancL. FancL is the ubiquitin ligase protein that mediates ubiquitination of FancD2, a key step in the DNA damage pathway [, ]. FancL belongs to the multisubunit Fanconi anemia (FA) complex, which is composed of subunits: FancA, FancB, FancC, FancE, FancF, FancG, FancL/PHF9 and FancM. The WD repeats are required for interaction of FancL with other subunits of the FA complex []. In humans defects in FancL are a cause of Fanconi anemia (FA) [MIM:227650], and the FA complex is not found in FA patients. FA is a genetically heterogeneous, autosomal recessive disorder characterised by progressive pancytopenia, a diverse assortment of congenital malformations, and a predisposition to the development of malignancies. At the cellular level it is associated with hypersensitivity to DNA-damaging agents, chromosomal instability (increased chromosome breakage), and defective DNA repair.; PDB: 3ZQS_B 3K1L_A.
Probab=54.26 E-value=17 Score=28.71 Aligned_cols=64 Identities=22% Similarity=0.401 Sum_probs=40.1
Q ss_pred CCCceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccccCCcccCCCcEeeecCCCcCCC-cccHHHHHHH
Q 032505 18 GESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSS-AYDCRTILLS 96 (139)
Q Consensus 18 ~~~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~Hpni~~~G~icl~~l~~~W~p-~~~i~~iL~~ 96 (139)
++++...++.+.. + .....++|.++.+||.++|.+...-++ . +...|.+ ..++.+++..
T Consensus 122 d~~ls~i~l~~~D---~---~R~H~l~l~l~~~yp~~~p~~~~~~P~-~-------------~~~~w~~~~ssL~~v~~q 181 (291)
T PF09765_consen 122 DDDLSTIKLKIFD---S---SRQHYLELKLPSNYPFEPPSCSLDLPI-P-------------FSLSWSPSQSSLKDVVQQ 181 (291)
T ss_dssp -CCCSEEEEEEET---T---CEEEEEEEETTTTTTTSEEEECS-TTS---------------HHHHHHCHT-SHHHHHHH
T ss_pred CCCccEEEEEEEc---C---CceEEEEEEECCCCCCCCceeeCCCCc-c-------------hhhhhcccccCHHHHHHH
Confidence 5677777887772 2 257889999999999999975321111 1 1135777 5577766665
Q ss_pred HHHhh
Q 032505 97 IQSLL 101 (139)
Q Consensus 97 i~~ll 101 (139)
.+..+
T Consensus 182 F~~~l 186 (291)
T PF09765_consen 182 FQEAL 186 (291)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55554
No 42
>cd00421 intradiol_dioxygenase Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. This family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases which are mononuclear non-heme iron enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings. The members are intradiol-cleaving enzymes which break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. Catechol 1,2-dioxygenases are mostly homodimers with one catalytic ferric ion per monomer. Protocatechuate 3,4-dioxygenases form more diverse oligomers.
Probab=53.31 E-value=22 Score=24.87 Aligned_cols=25 Identities=28% Similarity=0.594 Sum_probs=22.4
Q ss_pred CCcEEEEEEEcCCCCC-CCCCeeEEe
Q 032505 37 EGLSYKLSLRFPLDYP-FKPPQVKFE 61 (139)
Q Consensus 37 egg~f~~~i~f~~~YP-~~pP~v~f~ 61 (139)
+.|.|.|.-.+|..|| ..||.|.|.
T Consensus 64 ~~G~y~f~ti~Pg~Y~~~R~~HiH~~ 89 (146)
T cd00421 64 ADGRYRFRTIKPGPYPIGRPPHIHFK 89 (146)
T ss_pred CCcCEEEEEEcCCCCCCCCCCEEEEE
Confidence 3589999999999999 999999886
No 43
>PF03366 YEATS: YEATS family; InterPro: IPR005033 Named the YEATS family, after `YNK7', `ENL', `AF-9', and `TFIIF small subunit', this family also contains the GAS41 protein. All these proteins are thought to have a transcription stimulatory activity.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3QRL_A 2L7E_A 3FK3_C 3RLS_A.
Probab=51.20 E-value=61 Score=20.62 Aligned_cols=42 Identities=14% Similarity=0.241 Sum_probs=29.8
Q ss_pred eEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecccc
Q 032505 22 FTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCF 65 (139)
Q Consensus 22 ~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~ 65 (139)
.+|.+.+.|+.+..-..-+=++...+.+.|+. |...+..+.|
T Consensus 2 h~W~v~Vr~~~~~d~~~~i~kV~f~LHpsF~~--p~r~v~~pPF 43 (84)
T PF03366_consen 2 HKWTVYVRGLDNEDLSYFIKKVTFKLHPSFPN--PVRVVTKPPF 43 (84)
T ss_dssp EEEEEEEEECCCT--TTTEEEEEEES-TTSSS---EEECSSTTE
T ss_pred cEEEEEEEeCCCCCccceEEEEEEECCCCCCC--CceEecCCCC
Confidence 57999999988865556678899999999886 6666665544
No 44
>cd03457 intradiol_dioxygenase_like Intradiol dioxygenase supgroup. Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. They break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. The family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases. The specific function of this subgroup is unknown.
Probab=50.69 E-value=25 Score=25.94 Aligned_cols=26 Identities=19% Similarity=0.321 Sum_probs=23.2
Q ss_pred CCcEEEEEEEcCCCCCCCCCeeEEec
Q 032505 37 EGLSYKLSLRFPLDYPFKPPQVKFET 62 (139)
Q Consensus 37 egg~f~~~i~f~~~YP~~pP~v~f~t 62 (139)
+.|.|.|+=.+|.-||..+|.|.|.-
T Consensus 85 ~~G~~~F~TI~PG~Y~gR~~HIH~~V 110 (188)
T cd03457 85 ADGVVTFTTIFPGWYPGRATHIHFKV 110 (188)
T ss_pred CCccEEEEEECCCCCCCCCceEEEEE
Confidence 46899999999999999999998864
No 45
>PF00845 Gemini_BL1: Geminivirus BL1 movement protein; InterPro: IPR000211 The movement of bipartite Geminiviruses such as squash leaf curl virus (SqLCV) requires the cooperative interaction of two essential virus-encoded movement proteins, BR1 and BL1. Recent studies of SqLCV and bean dwarf mosaic virus have shown that BR1 and BL1 act in a cooperative manner to move the viral genome intracellularly from the nucleus to the cytoplasm and across the wall cell to cell. BR1 is a nuclear shuttle protein, and it has been proposed to bind newly replicated viral ssDNA genomes and move these between the nucleus and cytoplasm. These BR1-genome complexes are then directed to the cell periphery through interactions between BR1 and BL1, where, as the result of BL1 action, the complexes are moved to adjacent uninfected cells. The precise mechanism by which BL1 acts to transport these genome complexes across the cell wall, and whether this may differ in different cell types, remains at issue [].; GO: 0003677 DNA binding, 0046740 spread of virus in host, cell to cell, 0033644 host cell membrane
Probab=42.01 E-value=75 Score=24.73 Aligned_cols=48 Identities=21% Similarity=0.397 Sum_probs=33.1
Q ss_pred CCCceEEEEEEecCCCCCCCC---cEEEEEEEcC-----CCCCCCCCeeEEecccc
Q 032505 18 GESIFTWIGTIEGGKGTMYEG---LSYKLSLRFP-----LDYPFKPPQVKFETMCF 65 (139)
Q Consensus 18 ~~~~~~w~~~i~Gp~~t~yeg---g~f~~~i~f~-----~~YP~~pP~v~f~t~i~ 65 (139)
-.|..-|++..+.-+.....| +.|+.++++. .+-||++|+|+.+++-|
T Consensus 99 lKDp~PWkl~YrV~DtNV~~~thFak~kgKLKLStAKHS~DI~Fr~PtikILSK~f 154 (276)
T PF00845_consen 99 LKDPIPWKLYYRVEDTNVHQGTHFAKFKGKLKLSTAKHSVDIPFRAPTIKILSKQF 154 (276)
T ss_pred cCCCCCeEEEEEeecCccccceeeeeeeceeeecccccccccccCCCceEeeeccc
Confidence 456677888887433333333 4566667664 68899999999998755
No 46
>cd03459 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=40.68 E-value=46 Score=23.81 Aligned_cols=25 Identities=20% Similarity=0.514 Sum_probs=22.0
Q ss_pred CcEEEEEEEcCCCCC-----CCCCeeEEec
Q 032505 38 GLSYKLSLRFPLDYP-----FKPPQVKFET 62 (139)
Q Consensus 38 gg~f~~~i~f~~~YP-----~~pP~v~f~t 62 (139)
.|.|.|+-.+|.-|| ..||.|.|.-
T Consensus 72 ~G~~~f~Ti~Pg~Y~~p~~~~R~~HIH~~V 101 (158)
T cd03459 72 DGRYRFRTIKPGAYPWRNGAWRAPHIHVSV 101 (158)
T ss_pred CCcEEEEEECCCCcCCCCCCCcCCEEEEEE
Confidence 489999999999999 8999998863
No 47
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=38.60 E-value=77 Score=20.57 Aligned_cols=26 Identities=23% Similarity=0.166 Sum_probs=20.8
Q ss_pred CCCcEEEEEEEcCCCCCCCCCeeEEecc
Q 032505 36 YEGLSYKLSLRFPLDYPFKPPQVKFETM 63 (139)
Q Consensus 36 yegg~f~~~i~f~~~YP~~pP~v~f~t~ 63 (139)
-||..+.|...-|..|| .|+|.+.+.
T Consensus 16 ~eG~~~~L~C~pP~g~P--~P~i~W~~~ 41 (95)
T cd05845 16 EEGDSVVLPCNPPKSAV--PLRIYWMNS 41 (95)
T ss_pred ecCCCEEEEecCCCCCC--CCEEEEECC
Confidence 46777888888899999 589988854
No 48
>cd07981 TAF12 TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and are involved in forming the TFIID complex. TFIID is one of the seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs function such as serving as activator-bind
Probab=37.92 E-value=89 Score=19.08 Aligned_cols=42 Identities=24% Similarity=0.258 Sum_probs=31.3
Q ss_pred HHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhcc
Q 032505 96 SIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEF 137 (139)
Q Consensus 96 ~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~~r~~~~~~a~ 137 (139)
.|+.++..-++..-+..+|...+.+- +.|...+-+.+.++|.
T Consensus 6 ~l~~lv~~id~~~~~~~da~~~l~~~~e~fv~~v~~~a~~lAk 48 (72)
T cd07981 6 KLQELLKEIDPREQLDPDVEELLLEIADDFVDDVVEDACRLAK 48 (72)
T ss_pred HHHHHHHhhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566665555677888999988888 9999888777777664
No 49
>PF04881 Adeno_GP19K: Adenovirus GP19K; InterPro: IPR006965 This 19 kDa glycoprotein binds the major histocompatibility (MHC) class I antigens in the endoplasmic reticulum (ER). The ER retention signal at the C terminus of Gp19K causes retention of the complex in the ER, preventing lysis of the cell by cytotoxic T-lymphocytes [].; GO: 0005537 mannose binding, 0050690 regulation of defense response to virus by virus
Probab=36.23 E-value=40 Score=23.53 Aligned_cols=19 Identities=16% Similarity=0.176 Sum_probs=16.0
Q ss_pred CCCceEEEEEEecCCCCCC
Q 032505 18 GESIFTWIGTIEGGKGTMY 36 (139)
Q Consensus 18 ~~~~~~w~~~i~Gp~~t~y 36 (139)
..|...|.|++.|++||+.
T Consensus 44 PGd~~~ytVtV~G~dGs~~ 62 (139)
T PF04881_consen 44 PGDPEWYTVTVQGPDGSIR 62 (139)
T ss_pred CCCCcceEEEEECCCCcce
Confidence 5678889999999999865
No 50
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=33.57 E-value=53 Score=26.37 Aligned_cols=25 Identities=20% Similarity=0.422 Sum_probs=21.5
Q ss_pred cEEEEEEEcCCCCCCCCCeeEEecc
Q 032505 39 LSYKLSLRFPLDYPFKPPQVKFETM 63 (139)
Q Consensus 39 g~f~~~i~f~~~YP~~pP~v~f~t~ 63 (139)
-.+.+.+..++.||...|+|+...+
T Consensus 45 vcvtl~m~vs~gYP~esPtvtl~nP 69 (368)
T KOG4445|consen 45 VCVTLEMTVSEGYPAESPTVTLSNP 69 (368)
T ss_pred EEEEEEEecCCCCCCcCCceEecCC
Confidence 4677888899999999999998764
No 51
>PF13950 Epimerase_Csub: UDP-glucose 4-epimerase C-term subunit; PDB: 1EK5_A 1I3K_B 1I3M_B 1HZJ_A 1EK6_A 1I3N_A 1I3L_A 2CNB_B 1GY8_D 1NAI_A ....
Probab=31.50 E-value=47 Score=19.79 Aligned_cols=20 Identities=10% Similarity=0.302 Sum_probs=12.8
Q ss_pred cCCCcccHHHHHHHHHHhhC
Q 032505 83 KWSSAYDCRTILLSIQSLLG 102 (139)
Q Consensus 83 ~W~p~~~i~~iL~~i~~ll~ 102 (139)
+|.|.++|.++|...-....
T Consensus 37 gW~p~~~L~~~i~~~w~W~~ 56 (62)
T PF13950_consen 37 GWKPKYSLEDMIRDAWNWQK 56 (62)
T ss_dssp ----SSSHHHHHHHHHHHHH
T ss_pred CCCcCCCHHHHHHHHHHHHH
Confidence 79999999999988766543
No 52
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=30.28 E-value=72 Score=25.81 Aligned_cols=23 Identities=13% Similarity=0.675 Sum_probs=20.0
Q ss_pred EEEEEEEcCCCCCCCCCeeEEec
Q 032505 40 SYKLSLRFPLDYPFKPPQVKFET 62 (139)
Q Consensus 40 ~f~~~i~f~~~YP~~pP~v~f~t 62 (139)
.|-+.|.+|..||...|.++|.+
T Consensus 307 ~flvHi~Lp~~FP~~qP~ltlqS 329 (333)
T PF06113_consen 307 TFLVHISLPIQFPKDQPSLTLQS 329 (333)
T ss_pred EEEEEEeccCCCCCcCCeEEEEe
Confidence 56778889999999999999875
No 53
>PF03847 TFIID_20kDa: Transcription initiation factor TFIID subunit A; InterPro: IPR003228 Human transcription initiation factor TFIID is composed of the TATA-binding polypeptide (TBP) and at least 13 TBP-associated factors (TAFs) that collectively or individually are involved in activator-dependent transcription [].; GO: 0006352 transcription initiation, DNA-dependent, 0005669 transcription factor TFIID complex; PDB: 1H3O_B.
Probab=29.56 E-value=1.4e+02 Score=18.23 Aligned_cols=41 Identities=20% Similarity=0.221 Sum_probs=27.6
Q ss_pred HHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhc
Q 032505 96 SIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGE 136 (139)
Q Consensus 96 ~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~~r~~~~~~a 136 (139)
.|+.|+..-++..-++.++..++..= +.|...+-..+.+.|
T Consensus 4 ~l~~Lv~~iDp~~~ld~~vee~Ll~laddFv~~v~~~ac~lA 45 (68)
T PF03847_consen 4 KLQELVKQIDPNEKLDPDVEELLLELADDFVDDVVSFACRLA 45 (68)
T ss_dssp HHHHHHHCC-SS----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777788888899988888877 888888766666554
No 54
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=29.54 E-value=95 Score=25.06 Aligned_cols=39 Identities=18% Similarity=0.344 Sum_probs=29.3
Q ss_pred EEEEEEecCCCC-CCCCcEEEEEEE---cCCCCCCCCCeeEEec
Q 032505 23 TWIGTIEGGKGT-MYEGLSYKLSLR---FPLDYPFKPPQVKFET 62 (139)
Q Consensus 23 ~w~~~i~Gp~~t-~yegg~f~~~i~---f~~~YP~~pP~v~f~t 62 (139)
.|+..+.|-.|+ -|++|.+++++. |-.- =.+.|+|||-.
T Consensus 198 h~Kssl~G~sD~~~~~~~~~kvT~hhNyFkn~-~qR~PriRfG~ 240 (345)
T COG3866 198 HDKSSLLGSSDSSNYDDGKYKVTIHHNYFKNL-YQRGPRIRFGM 240 (345)
T ss_pred CCeeeeeccCCcccccCCceeEEEeccccccc-cccCCceEeeE
Confidence 589999997776 788999999886 3333 34566999964
No 55
>TIGR02423 protocat_alph protocatechuate 3,4-dioxygenase, alpha subunit. This model represents the alpha chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the beta chain (TIGR02422), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=27.40 E-value=93 Score=23.04 Aligned_cols=25 Identities=16% Similarity=0.272 Sum_probs=20.9
Q ss_pred CCcEEEEEEEcCCCCCC-----CCCeeEEe
Q 032505 37 EGLSYKLSLRFPLDYPF-----KPPQVKFE 61 (139)
Q Consensus 37 egg~f~~~i~f~~~YP~-----~pP~v~f~ 61 (139)
+.|.|.|+-..|..||. .||.|.|.
T Consensus 95 ~~G~y~f~TI~Pg~Yp~~~g~~R~~HiH~~ 124 (193)
T TIGR02423 95 ESGEFTFETVKPGAVPDRDGVLQAPHINVS 124 (193)
T ss_pred CCCCEEEEEEcCCCcCCCCCCCcCCeEEEE
Confidence 34789999999999998 88888765
No 56
>KOG1047 consensus Bifunctional leukotriene A4 hydrolase/aminopeptidase LTA4H [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones; Defense mechanisms; Amino acid transport and metabolism]
Probab=25.80 E-value=71 Score=27.80 Aligned_cols=29 Identities=34% Similarity=0.554 Sum_probs=23.5
Q ss_pred CCCCCcEEEEEEEcCCCCCC---CCCeeEEecc
Q 032505 34 TMYEGLSYKLSLRFPLDYPF---KPPQVKFETM 63 (139)
Q Consensus 34 t~yegg~f~~~i~f~~~YP~---~pP~v~f~t~ 63 (139)
+||.=|.|-+ +.+|++||+ +-|-++|+|+
T Consensus 248 GpY~WgryDl-lvlPpSFP~gGMENPcltF~Tp 279 (613)
T KOG1047|consen 248 GPYVWGRYDL-LVLPPSFPFGGMENPCLTFVTP 279 (613)
T ss_pred CCcccccceE-EEecCCCCcccccCcceeeecc
Confidence 4677777776 557999998 7899999986
No 57
>cd03463 3,4-PCD_alpha Protocatechuate 3,4-dioxygenase (3,4-PCD) , alpha subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=25.66 E-value=1.1e+02 Score=22.57 Aligned_cols=24 Identities=13% Similarity=0.170 Sum_probs=19.6
Q ss_pred CcEEEEEEEcCCCCCC-----CCCeeEEe
Q 032505 38 GLSYKLSLRFPLDYPF-----KPPQVKFE 61 (139)
Q Consensus 38 gg~f~~~i~f~~~YP~-----~pP~v~f~ 61 (139)
.|.|.|+-.+|.-||. .||.|.|.
T Consensus 92 ~G~y~F~Ti~Pg~Y~~~~g~~R~~HIH~~ 120 (185)
T cd03463 92 DGRFSFTTVKPGAVPGRDGAGQAPHINVW 120 (185)
T ss_pred CCCEEEEEEcCCCcCCCCCCCcCCeEEEE
Confidence 4789999999999995 77777664
No 58
>PF02563 Poly_export: Polysaccharide biosynthesis/export protein; InterPro: IPR003715 The extracellular polysaccharide colanic acid (CA) is produced by species of the family Enterobacteriaceae. In Escherichia coli (strain K12) the CA cluster comprises 19 genes. The wzx gene encodes a protein with multiple transmembrane segments that may function in export of the CA repeat unit from the cytoplasm into the periplasm in a process analogous to O-unit export. The CA gene clusters may be involved in the export of polysaccharide from the cell [].; GO: 0015159 polysaccharide transmembrane transporter activity, 0015774 polysaccharide transport, 0016020 membrane; PDB: 2W8I_E 2W8H_E 2J58_D.
Probab=24.99 E-value=99 Score=19.12 Aligned_cols=36 Identities=19% Similarity=0.184 Sum_probs=24.5
Q ss_pred cccCCCcEeeecCCCcCCCcccHHHHHHHHHHhhCC
Q 032505 68 NVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGE 103 (139)
Q Consensus 68 ni~~~G~icl~~l~~~W~p~~~i~~iL~~i~~ll~~ 103 (139)
-|+.+|.|.+..+..---.+.|+.++=..|...+..
T Consensus 34 ~V~~dG~I~lP~iG~v~v~G~T~~e~~~~I~~~l~~ 69 (82)
T PF02563_consen 34 TVDPDGTISLPLIGPVKVAGLTLEEAEEEIKQRLQK 69 (82)
T ss_dssp E--TTSEEEETTTEEEE-TT--HHHHHHHHHHHHTT
T ss_pred EECCCCcEeecccceEEECCCCHHHHHHHHHHHHHH
Confidence 577899999998865556678888888888777764
No 59
>PF04314 DUF461: Protein of unknown function (DUF461); InterPro: IPR007410 This entry represents a domain found in of proteins of unknown function, including DR1885 from Deinococcus radiodurans and CC3502 from Caulobacter crescentus (Caulobacter vibrioides), which share a potential metal binding motif H(M)X10MX21HXM. DR1885 was found to bind copper(I) through a histidine and three Mets in a cupredoxin-like fold []. The surface location of the copper-binding site as well as the type of coordination are well poised for metal transfer chemistry, suggesting that DR1885 might transfer copper, taking the role of Cox17 in bacteria (Cox17 being an accessory protein required for correct assembly of eukaryotic cyochrome c oxidase). ; PDB: 2K6W_A 2K6Z_A 2K6Y_A 2K70_A 1X9L_A 2JQA_A.
Probab=23.86 E-value=1e+02 Score=20.28 Aligned_cols=27 Identities=22% Similarity=0.193 Sum_probs=22.1
Q ss_pred EEEEEEecCCCCCCCCcEEEEEEEcCC
Q 032505 23 TWIGTIEGGKGTMYEGLSYKLSLRFPL 49 (139)
Q Consensus 23 ~w~~~i~Gp~~t~yegg~f~~~i~f~~ 49 (139)
-.|+.+.|+...+=+|..+.++|.|-+
T Consensus 77 g~HlmL~g~~~~l~~G~~v~ltL~f~~ 103 (110)
T PF04314_consen 77 GYHLMLMGLKRPLKPGDTVPLTLTFED 103 (110)
T ss_dssp CCEEEEECESS-B-TTEEEEEEEEETT
T ss_pred CEEEEEeCCcccCCCCCEEEEEEEECC
Confidence 478999999998999999999999864
No 60
>cd02848 Chitinase_N_term Chitinase N-terminus domain. Chitinases hydrolyze the abundant natural biopolymer chitin, producing smaller chito-oligosaccharides. Chitin consists of multiple N-acetyl-D-glucosamine (NAG) residues connected via beta-1,4-glycosidic linkages and is an important structural element of fungal cell wall and arthropod exoskeletons. On the basis of the mode of chitin hydrolysis, chitinases are classified as random, endo-, and exo-chitinases and based on sequence criteria, chitinases belong to families 18 and 19 of glycosyl hydrolases. The N-terminus of chitinase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitob
Probab=22.27 E-value=1.3e+02 Score=20.26 Aligned_cols=11 Identities=18% Similarity=0.567 Sum_probs=8.9
Q ss_pred CCcEEEEEEEc
Q 032505 37 EGLSYKLSLRF 47 (139)
Q Consensus 37 egg~f~~~i~f 47 (139)
+||.|.+++++
T Consensus 78 kgG~y~m~V~l 88 (106)
T cd02848 78 KGGRYQMQVAL 88 (106)
T ss_pred CCCeEEEEEEE
Confidence 48888888876
No 61
>PF12652 CotJB: CotJB protein; InterPro: IPR024207 The cotJ operon proteins affect spore coat composition, and is controlled by sigma E. The genes, which include CotJB, are either required for the normal formation of the inner layers of the coat or are themselves structural components of the coat []. CotJB has been identified as a spore coat protein [].
Probab=21.07 E-value=1.9e+02 Score=18.22 Aligned_cols=29 Identities=10% Similarity=0.035 Sum_probs=20.9
Q ss_pred CCcccHHHHHHhhch-HHHHHHHHHHHHhh
Q 032505 107 ESPLNSYAAALLNNK-EDYRKMVQKQYFAG 135 (139)
Q Consensus 107 ~~p~N~~a~~~~~~~-~~f~~~~r~~~~~~ 135 (139)
.+|-|.+|...|+.- ++..+-.+++.++|
T Consensus 24 THP~d~~Al~~y~~~~~~~~~l~~~Ye~~y 53 (78)
T PF12652_consen 24 THPDDQEALEYYNEYSKQRKQLKKEYEKRY 53 (78)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467788888888876 66666666666665
No 62
>KOG0662 consensus Cyclin-dependent kinase CDK5 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=20.96 E-value=1e+02 Score=23.35 Aligned_cols=55 Identities=25% Similarity=0.457 Sum_probs=41.3
Q ss_pred CCCCeeEEeccccCCcccC--CCcEeeecCCCcC--CCcccHHHHHHHHHHhhCCCCCC
Q 032505 53 FKPPQVKFETMCFHPNVDQ--YGNICLDILQDKW--SSAYDCRTILLSIQSLLGEPNPE 107 (139)
Q Consensus 53 ~~pP~v~f~t~i~Hpni~~--~G~icl~~l~~~W--~p~~~i~~iL~~i~~ll~~p~~~ 107 (139)
..||-|.|-.+.|.-.|+- -|.|--.+.+.+| -|+-.+.+-|..|..+|-.|+.+
T Consensus 167 yrppdvlfgakly~tsidmwsagcifaelanagrplfpg~dvddqlkrif~~lg~p~ed 225 (292)
T KOG0662|consen 167 YRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTED 225 (292)
T ss_pred ccCcceeeeeehhccchHhhhcchHHHHHhhcCCCCCCCCcHHHHHHHHHHHhCCCccc
Confidence 4789999999999888875 5555545555565 47778888888888888776643
No 63
>PF00779 BTK: BTK motif; InterPro: IPR001562 The Btk-type zinc finger or Btk motif (BM) is a conserved zinc-binding motif containing conserved cysteines and a histidine that is present in certain eukaryotic signalling proteins. The motif is named after Bruton's tyrosine kinase (Btk), an enzyme which is essential for B cell maturation in humans and mice [, ]. Btk is a member of the Tec family of protein tyrosine kinases (PTK). These kinases contain a conserved Tec homology (TH) domain between the N-terminal pleckstrin homology (PH) domain (IPR001849 from INTERPRO) and the Src homology 3 (SH3) domain (IPR001452 from INTERPRO). The N-terminal of the TH domain is highly conserved and known as the Btf motif, while the C-terminal region of the TH domain contains a proline-rich region (PRR). The Btk motif contains a conserved His and three Cys residues that form a zinc finger (although these differ from known zinc finger topologies), while PRRs are commonly involved in protein-protein interactions, including interactions with G proteins [, ]. The TH domain may be of functional importance in various signalling pathways in different species []. A complete TH domain, containing both the Btk and PRR regions, has not been found outside the Tec family; however, the Btk motif on its own does occur in other proteins, usually C-terminal to a PH domain (note that although a Btk motif always occurs C-terminal to a PH domain, not all PH domains are followed by a Btk motif). The crystal structures of Btk show that the Btk-type zinc finger has a globular core, formed by a long loop which is held together by a zinc ion, and that the Btk motif is packed against the PH domain []. The zinc-binding residues are a histidine and three cysteines, which are fully conserved in the Btk motif []. Proteins known to contain a Btk-type zinc finger include: Mammalian Bruton's tyrosine kinase (Btk), a protein tyrosine kinase involved in modulation of diverse cellular processes. Mutations affecting Btk are the cause of X-linked agammaglobulinemia (XLA) in humans and X-linked immunodeficiency in mice. Mammalian Tec, Bmx, and Itk proteins, which are tyrosine protein kinases of the Tec subfamily. Drosophila tyrosine-protein kinase Btk29A, which is required for the development of proper ring canals and of male genitalia and required for adult survival. Mammalian Ras GTPase-activating proteins (RasGAP), which regulate the activation of inactive GDP-bound Ras by converting GDP to GTP. ; GO: 0035556 intracellular signal transduction; PDB: 2E6I_A 2YS2_A 2Z0P_A 1B55_A 1BTK_B 1BWN_A.
Probab=20.85 E-value=37 Score=17.70 Aligned_cols=14 Identities=29% Similarity=0.688 Sum_probs=8.7
Q ss_pred ccCCcccCCCc-Eee
Q 032505 64 CFHPNVDQYGN-ICL 77 (139)
Q Consensus 64 i~Hpni~~~G~-icl 77 (139)
-|||.+..+|+ .|-
T Consensus 2 ~yHPg~~~~g~W~CC 16 (32)
T PF00779_consen 2 KYHPGAWRGGKWLCC 16 (32)
T ss_dssp EE-SS-EETTCESSS
T ss_pred CcCCCcccCCcCcCC
Confidence 48999999877 444
No 64
>KOG2851 consensus Eukaryotic-type DNA primase, catalytic (small) subunit [Replication, recombination and repair]
Probab=20.67 E-value=2.3e+02 Score=23.39 Aligned_cols=29 Identities=24% Similarity=0.473 Sum_probs=23.0
Q ss_pred CCcEeeecCC---CcCCCcc--cHHHHHHHHHHh
Q 032505 72 YGNICLDILQ---DKWSSAY--DCRTILLSIQSL 100 (139)
Q Consensus 72 ~G~icl~~l~---~~W~p~~--~i~~iL~~i~~l 100 (139)
+|+||.++-- +...|.. ||..+|..|.++
T Consensus 336 Tg~VcVPidv~~~d~Fdp~~vPti~~l~eEl~~~ 369 (412)
T KOG2851|consen 336 TGRVCVPIDVSKVDEFDPEKVPTISDLLEELESL 369 (412)
T ss_pred CCceEeecchhhccccCcccCCcHHHHHHHHhhc
Confidence 9999986542 5666665 899999999988
No 65
>PF09943 DUF2175: Uncharacterized protein conserved in archaea (DUF2175); InterPro: IPR018686 This family of various hypothetical archaeal proteins has no known function.
Probab=20.12 E-value=1e+02 Score=20.53 Aligned_cols=19 Identities=32% Similarity=0.670 Sum_probs=15.7
Q ss_pred EEEEEEecCCCCCCCCcEEEE
Q 032505 23 TWIGTIEGGKGTMYEGLSYKL 43 (139)
Q Consensus 23 ~w~~~i~Gp~~t~yegg~f~~ 43 (139)
+|.|.|=|-+ +|+|-.|.|
T Consensus 2 kWkC~iCg~~--I~~gqlFTF 20 (101)
T PF09943_consen 2 KWKCYICGKP--IYEGQLFTF 20 (101)
T ss_pred ceEEEecCCe--eeecceEEE
Confidence 6999998644 799999976
No 66
>smart00803 TAF TATA box binding protein associated factor. TAFs (TATA box binding protein associated factors) are part of the transcription initiation factor TFIID multimeric protein complex. TFIID is composed of the TATA box binding protein (TBP) and a number of TAFs. The TAFs provide binding sites for many different transcriptional activators and co-activators that modulate transcription initiation by Pol II. TAF proteins adopt a histone-like fold.
Probab=20.07 E-value=1.7e+02 Score=17.59 Aligned_cols=29 Identities=24% Similarity=0.082 Sum_probs=23.2
Q ss_pred cccHHHHHHhhch-HHHHHHHHHHHHhhcc
Q 032505 109 PLNSYAAALLNNK-EDYRKMVQKQYFAGEF 137 (139)
Q Consensus 109 p~N~~a~~~~~~~-~~f~~~~r~~~~~~a~ 137 (139)
.++.+++..+..+ +.+.+.+-+.+.+|+.
T Consensus 19 ris~~a~~~l~~~~e~rl~~i~~~A~k~~~ 48 (65)
T smart00803 19 NLSDEAAKLLAEDVEYRIKEIVQEALKFMR 48 (65)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788899999999 8888888777776653
Done!