Query 032505
Match_columns 139
No_of_seqs 133 out of 1060
Neff 7.9
Searched_HMMs 29240
Date Tue Mar 26 00:42:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032505.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032505hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gpr_A Ubiquitin-conjugating e 100.0 1.7E-50 5.7E-55 287.9 14.8 136 2-138 15-151 (151)
2 2c2v_B Ubiquitin-conjugating e 100.0 1.8E-50 6.3E-55 288.6 13.3 137 2-139 16-153 (154)
3 2r0j_A Ubiquitin carrier prote 100.0 2.2E-50 7.4E-55 286.8 13.5 137 2-139 12-149 (149)
4 2ayv_A Ubiquitin-conjugating e 100.0 1.2E-49 4E-54 287.5 14.7 134 2-136 32-166 (166)
5 1z2u_A Ubiquitin-conjugating e 100.0 1.2E-49 4E-54 283.3 14.1 135 2-137 15-150 (150)
6 2c4o_A Ubiquitin-conjugating e 100.0 1.7E-49 5.9E-54 286.4 15.0 135 2-137 30-165 (165)
7 2aak_A UBC1, ubiquitin conjuga 100.0 1.7E-49 5.9E-54 282.9 14.6 136 2-138 15-151 (152)
8 1ayz_A UBC2, ubiquitin-conjuga 100.0 9.6E-50 3.3E-54 288.7 13.4 136 2-138 15-151 (169)
9 1zdn_A Ubiquitin-conjugating e 100.0 1.1E-49 3.8E-54 285.6 12.7 134 2-136 24-158 (158)
10 1yh2_A HSPC150 protein similar 100.0 3.2E-49 1.1E-53 286.0 15.1 137 2-139 15-156 (169)
11 1fxt_A Ubiquitin-conjugating e 100.0 7.7E-50 2.6E-54 283.9 11.4 135 2-137 12-149 (149)
12 1jat_A Ubiquitin-conjugating e 100.0 1.2E-49 4E-54 284.6 12.0 136 2-138 16-152 (155)
13 2e2c_A Ubiquitin conjugating e 100.0 4.8E-49 1.6E-53 281.8 14.6 136 2-139 20-156 (156)
14 2ucz_A UBC7, ubiquitin conjuga 100.0 1.1E-48 3.7E-53 282.2 14.4 136 2-138 15-165 (165)
15 3rcz_B SUMO-conjugating enzyme 100.0 1.1E-48 3.9E-53 281.6 13.9 134 2-136 21-162 (163)
16 3h8k_A Ubiquitin-conjugating e 100.0 2E-48 7E-53 280.4 14.7 135 2-137 14-163 (164)
17 2f4z_A Tgtwinscan_2721 - E2 do 100.0 1.6E-48 5.4E-53 287.3 13.7 129 10-138 63-193 (193)
18 3bzh_A Ubiquitin-conjugating e 100.0 3.3E-48 1.1E-52 286.0 14.8 135 2-137 59-194 (194)
19 2pwq_A Ubiquitin conjugating e 100.0 1.6E-48 5.3E-53 291.7 12.5 136 2-138 34-171 (216)
20 2gjd_A Ubiquitin-conjugating e 100.0 3.2E-48 1.1E-52 277.8 13.5 135 2-137 15-157 (157)
21 2bep_A Ubiquitin-conjugating e 100.0 4.1E-48 1.4E-52 277.7 14.0 130 8-137 27-158 (159)
22 1i7k_A Ubiquitin-conjugating e 100.0 2.9E-48 9.9E-53 283.1 13.4 136 2-139 41-177 (179)
23 1wzv_A Ubiquitin-conjugating e 100.0 9.8E-48 3.3E-52 274.7 13.1 135 2-138 15-152 (155)
24 2grr_A Ubiquitin-conjugating e 100.0 1.3E-47 4.4E-52 275.6 13.0 136 2-138 18-161 (161)
25 3k9o_A Ubiquitin-conjugating e 100.0 2.2E-47 7.6E-52 283.1 14.5 131 8-138 24-156 (201)
26 1tte_A Ubiquitin-conjugating e 100.0 1.2E-47 4.1E-52 286.7 9.6 136 2-138 13-151 (215)
27 3fn1_B NEDD8-conjugating enzym 100.0 9.4E-47 3.2E-51 272.5 13.9 134 2-137 25-167 (167)
28 3rz3_A Ubiquitin-conjugating e 100.0 9.3E-47 3.2E-51 276.1 13.2 135 2-137 18-173 (183)
29 1c4z_D UBCH7, ubiquitin conjug 100.0 1.6E-46 5.4E-51 268.2 13.6 136 1-138 12-150 (154)
30 1yrv_A Ubiquitin-conjugating l 100.0 1.3E-46 4.4E-51 272.2 12.0 131 2-134 34-168 (169)
31 3e46_A Ubiquitin-conjugating e 100.0 2.5E-46 8.7E-51 285.3 14.0 131 8-138 76-208 (253)
32 2onu_A Ubiquitin-conjugating e 100.0 2.4E-47 8.3E-52 271.9 7.8 129 10-138 17-148 (152)
33 2awf_A Ubiquitin-conjugating e 100.0 2E-46 6.8E-51 272.0 11.6 129 2-131 28-172 (172)
34 1y8x_A Ubiquitin-conjugating e 100.0 1.2E-45 4E-50 265.1 14.3 129 7-136 19-149 (160)
35 2nvu_C NEDD8-conjugating enzym 100.0 2.9E-45 9.8E-50 267.5 13.4 129 7-136 39-169 (180)
36 2z5d_A Ubiquitin-conjugating e 100.0 1.4E-46 4.8E-51 274.0 5.9 128 10-138 40-170 (179)
37 2y9m_A Ubiquitin-conjugating e 100.0 1.4E-44 4.6E-49 262.4 15.9 127 11-137 36-168 (172)
38 4ddg_A Ubiquitin-conjugating e 100.0 6.2E-45 2.1E-49 293.6 14.4 136 2-138 14-150 (399)
39 1yf9_A Ubiquitin carrier prote 100.0 5.1E-45 1.8E-49 264.3 9.7 131 3-138 24-157 (171)
40 3o2u_A NEDD8-conjugating enzym 100.0 9.9E-44 3.4E-48 261.4 13.6 129 8-137 43-179 (190)
41 4ds2_A Ubiquitin-conjugating e 100.0 3.3E-42 1.1E-46 248.7 8.8 121 9-129 37-163 (167)
42 2q0v_A Ubiquitin-conjugating e 100.0 4E-41 1.4E-45 240.6 7.3 118 2-121 32-156 (156)
43 3ceg_A Baculoviral IAP repeat- 100.0 2E-40 6.8E-45 259.5 10.8 135 3-138 88-244 (323)
44 2fo3_A Ubiquitin-conjugating e 100.0 6.6E-40 2.2E-44 226.6 11.1 106 2-108 17-123 (125)
45 2h2y_A Ubiquitin-conjugating e 100.0 4.5E-39 1.5E-43 225.4 11.7 104 2-106 31-135 (136)
46 2a4d_A Ubiquitin-conjugating e 100.0 2E-39 6.8E-44 232.5 9.6 113 2-115 36-156 (160)
47 1jat_B Ubiquitin-conjugating e 100.0 3.2E-40 1.1E-44 231.7 4.0 115 2-118 17-138 (138)
48 2hlw_A Ubiquitin-conjugating e 100.0 6.2E-39 2.1E-43 232.0 5.4 113 2-115 46-166 (170)
49 2a7l_A Hypothetical ubiquitin- 100.0 5.6E-38 1.9E-42 219.7 9.8 100 2-102 33-136 (136)
50 2f4w_A Ubiquitin-conjugating e 100.0 1E-35 3.5E-40 218.2 12.3 105 2-109 25-132 (187)
51 1zuo_A Hypothetical protein LO 100.0 7.5E-37 2.6E-41 224.0 0.9 126 2-136 38-181 (186)
52 2z6o_A UFM1-conjugating enzyme 99.9 5.6E-25 1.9E-29 156.6 0.1 99 14-120 48-161 (172)
53 3r3q_A Suppressor protein STP2 99.8 1.3E-20 4.5E-25 134.6 8.6 95 13-108 52-161 (162)
54 3kpa_A Probable ubiquitin fold 99.6 4E-17 1.4E-21 114.0 1.6 64 22-88 58-132 (168)
55 3obq_A Tumor susceptibility ge 99.6 1.3E-15 4.4E-20 107.1 7.2 79 18-102 50-137 (146)
56 2ebm_A RWD domain-containing p 95.9 0.052 1.8E-06 36.1 8.0 41 22-62 38-78 (128)
57 2daw_A RWD domain containing p 94.4 0.25 8.6E-06 34.1 8.0 23 40-62 76-98 (154)
58 2ebk_A RWD domain-containing p 94.0 0.39 1.3E-05 31.8 8.1 40 21-61 39-78 (128)
59 2day_A Ring finger protein 25; 93.9 0.24 8.1E-06 32.8 6.8 42 21-62 39-82 (128)
60 2yz0_A Serine/threonine-protei 93.8 0.21 7.1E-06 33.6 6.5 41 21-62 45-85 (138)
61 3zqs_A E3 ubiquitin-protein li 91.7 1.6 5.3E-05 31.3 8.9 65 18-101 22-86 (186)
62 1ukx_A GCN2, GCN2 EIF2alpha ki 90.9 0.15 5E-06 34.2 2.7 23 39-61 63-85 (137)
63 2dax_A Protein C21ORF6; RWD do 89.6 0.29 9.9E-06 33.5 3.4 24 39-62 73-96 (152)
64 2cwb_A Chimera of immunoglobul 85.4 0.16 5.5E-06 33.3 0.0 32 105-136 22-54 (108)
65 3rls_A YAF9, protein AF-9 homo 37.8 99 0.0034 21.7 6.0 45 19-65 30-74 (175)
66 3qrl_A Transcription initiatio 31.6 1.2E+02 0.0041 20.4 6.0 44 20-65 31-77 (140)
67 2bum_A Protocatechuate 3,4-dio 28.0 56 0.0019 23.4 3.5 26 37-62 109-139 (209)
68 3zqs_A E3 ubiquitin-protein li 26.9 58 0.002 23.0 3.4 55 38-97 123-179 (186)
69 2jrw_A Cyclic extended PEP.1; 26.4 16 0.00056 16.9 0.2 17 52-68 4-20 (26)
70 4g2e_A Peroxiredoxin; redox pr 22.4 75 0.0026 20.7 3.2 33 68-100 124-156 (157)
71 2k6w_A Putative uncharacterize 21.2 1.2E+02 0.0041 19.6 3.8 26 24-49 82-107 (120)
72 3pft_A Flavin reductase; desul 21.0 51 0.0018 22.1 2.1 30 53-82 42-74 (157)
73 2yzh_A Probable thiol peroxida 20.4 68 0.0023 21.0 2.6 34 68-101 138-171 (171)
74 1h3o_B Transcription initiatio 20.0 1.1E+02 0.0038 18.3 3.2 41 97-137 11-52 (76)
No 1
>4gpr_A Ubiquitin-conjugating enzyme family protein; ubiquitin conjugation, EHU ehring1, thiol esterification, ligase; 1.60A {Entamoeba histolytica}
Probab=100.00 E-value=1.7e-50 Score=287.93 Aligned_cols=136 Identities=38% Similarity=0.700 Sum_probs=132.6
Q ss_pred cccccCCCCCeEEeeCCCCceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccccCCcccCCCcEeeecCC
Q 032505 2 SLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQ 81 (139)
Q Consensus 2 ~l~~~~~~~gi~~~p~~~~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~Hpni~~~G~icl~~l~ 81 (139)
+|++ ++++||++.|.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+.+|.||+++|.
T Consensus 15 ~l~~-~~~~~i~~~p~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~~G~iCl~iL~ 93 (151)
T 4gpr_A 15 EIQQ-DPPCNCSAGPVGDDIFHWTATITGPDDSPYQGGLFFLDVHFPVDYPFKAPRVTFMTKVYHPNINKNGVICLDILK 93 (151)
T ss_dssp HHHH-SCCTTEEEEESSSCTTEEEEEEECCSSSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCTTCBBCCGGGT
T ss_pred HHHh-CCCCCEEEEEcCCCceEEEEEEeCCCCCCcCCCEEEEEEECCCCCCCCcceeEEecCcccceECCCCEEEccccc
Confidence 4566 899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCCCcccHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhccC
Q 032505 82 DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEFE 138 (139)
Q Consensus 82 ~~W~p~~~i~~iL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~~r~~~~~~a~~ 138 (139)
++|+|+++|++||.+|+++|.+|++++|+|.+||++|++| ++|.++||+|+++||++
T Consensus 94 ~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~d~~~f~~~ar~~~~~ya~p 151 (151)
T 4gpr_A 94 DQWSPALTLSRVLLSISSLLTDPNPSDPLDPEVANVLRANKKQFEDTAREWTRMYARP 151 (151)
T ss_dssp TTCCTTCCHHHHHHHHHHHHHCCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHHHCCC
T ss_pred CCCCCCCcHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999999999 99999999999999985
No 2
>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein complex, E3 ligase, ubiquitiny TPR, heat-shock protein; 2.9A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=1.8e-50 Score=288.57 Aligned_cols=137 Identities=36% Similarity=0.609 Sum_probs=130.9
Q ss_pred cccccCCCCCeEEeeCCCCceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccccCCcccCCCcEeeecCC
Q 032505 2 SLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQ 81 (139)
Q Consensus 2 ~l~~~~~~~gi~~~p~~~~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~Hpni~~~G~icl~~l~ 81 (139)
+|++ ++++||++.|.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+.+|.||+++|.
T Consensus 16 ~l~~-~~~~~i~~~~~~~~l~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~G~iCl~iL~ 94 (154)
T 2c2v_B 16 RLLA-EPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILK 94 (154)
T ss_dssp HHHH-SCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTTBCTTCBBCCHHHH
T ss_pred HHHh-CCCCCEEEEECCCchheEEEEEECCCCCCcCCCeEEEEEEcCCCCCCCCCEEEeecCcccCcCccCCeEEchhcc
Confidence 4566 899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCCCcccHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhccCC
Q 032505 82 DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEFES 139 (139)
Q Consensus 82 ~~W~p~~~i~~iL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~~r~~~~~~a~~~ 139 (139)
++|+|+++|.+||.+|+++|.+|++++|+|.+||++|++| ++|.++||+|+++||.+.
T Consensus 95 ~~W~p~~~i~~vl~~i~~ll~~pn~~~p~n~~aa~~~~~d~~~f~~~ar~~~~~~a~~~ 153 (154)
T 2c2v_B 95 DKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYAMNN 153 (154)
T ss_dssp TSCCTTCCHHHHHHHHHHHTTSCCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred CCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999999999999999999999 999999999999999863
No 3
>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas conjugation pathway, structural genomics, structural genomi consortium; 1.85A {Plasmodium falciparum} PDB: 3e95_A
Probab=100.00 E-value=2.2e-50 Score=286.77 Aligned_cols=137 Identities=41% Similarity=0.675 Sum_probs=132.6
Q ss_pred cccccCCCCCeEEeeCCCCceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccccCCcccCCCcEeeecCC
Q 032505 2 SLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQ 81 (139)
Q Consensus 2 ~l~~~~~~~gi~~~p~~~~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~Hpni~~~G~icl~~l~ 81 (139)
+|++ ++++||++.+.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+.+|.||+++|.
T Consensus 12 ~l~~-~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~G~iCl~iL~ 90 (149)
T 2r0j_A 12 NLAN-EPPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTKIYHPNIDKLGRICLDILK 90 (149)
T ss_dssp HHHH-SCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSCCCBTTBCTTCBBCCGGGT
T ss_pred HHHh-CCCCCEEEEECCCcccEEEEEEECCCCCCcCCCEEEEEEeCCcccCCCCCeeEeccCCccCCCCCCCEEechhcC
Confidence 4566 899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCCCcccHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhccCC
Q 032505 82 DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEFES 139 (139)
Q Consensus 82 ~~W~p~~~i~~iL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~~r~~~~~~a~~~ 139 (139)
++|+|+++|.+||.+|+++|.+|++++|+|.+||++|++| ++|.++||+|+++||+++
T Consensus 91 ~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~~~~a~~~ 149 (149)
T 2r0j_A 91 DKWSPALQIRTVLLSIQALLSSPEPDDPLDSKVAEHFKQDKNDAEHVARQWNKIYANNN 149 (149)
T ss_dssp TTCCTTSCHHHHHHHHHHHHHSCCTTSCSSCHHHHHHHHCHHHHHHHHHHHHHHHSCC-
T ss_pred CCCCCCCcHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHHccCC
Confidence 9999999999999999999999999999999999999999 999999999999999863
No 4
>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural genomics consortium, ubiquit ubiquitin-conjugating enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP: d.20.1.1
Probab=100.00 E-value=1.2e-49 Score=287.47 Aligned_cols=134 Identities=40% Similarity=0.718 Sum_probs=130.9
Q ss_pred cccccCCCCCeEEeeCCCCceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccccCCcccCCCcEeeecCC
Q 032505 2 SLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQ 81 (139)
Q Consensus 2 ~l~~~~~~~gi~~~p~~~~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~Hpni~~~G~icl~~l~ 81 (139)
+|++ ++++||++.|.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+.+|.||+++|.
T Consensus 32 ~l~~-~~~~gi~~~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNI~~~G~ICL~iL~ 110 (166)
T 2ayv_A 32 DLSK-DPPTNCSAGPVGDDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYPFKPPKVNFTTKIYHPNINSQGAICLDILK 110 (166)
T ss_dssp HHHH-SCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCBTTBCTTCBBCCGGGT
T ss_pred HHHh-CCCCCEEEEEcCCCcceeeEEEECCCCCCcCCCEEEEEEeCCCcCCCCCceeeeccCCcCCcCCCCCeEEccccc
Confidence 4566 899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCCCcccHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhc
Q 032505 82 DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGE 136 (139)
Q Consensus 82 ~~W~p~~~i~~iL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~~r~~~~~~a 136 (139)
++|+|+++|.+||.+|+++|.+|++++|+|.+||.+|++| ++|.++||+|+++||
T Consensus 111 ~~WsP~~ti~~vL~sI~sll~~pn~~~Pln~~aa~l~~~d~~~f~~~ar~~~~~~A 166 (166)
T 2ayv_A 111 DQWSPALTISKVLLSISSLLTDPNPDDPLVPEIAHLYKSDRMRYDQTAREWSQKYA 166 (166)
T ss_dssp TTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHC
T ss_pred ccCCCCCcHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHCHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999 999999999999997
No 5
>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway, structural genomics, protein structure initiative; 1.10A {Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A ...
Probab=100.00 E-value=1.2e-49 Score=283.26 Aligned_cols=135 Identities=39% Similarity=0.710 Sum_probs=131.5
Q ss_pred cccccCCCCCeEEeeCCCCceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccccCCcccCCCcEeeecCC
Q 032505 2 SLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQ 81 (139)
Q Consensus 2 ~l~~~~~~~gi~~~p~~~~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~Hpni~~~G~icl~~l~ 81 (139)
+|++ ++++||++.|.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+.+|.||+++|.
T Consensus 15 ~l~~-~~~~~~~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~G~iCl~iL~ 93 (150)
T 1z2u_A 15 DLGR-DPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILR 93 (150)
T ss_dssp HHHH-SCCSSEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCTTCBBCCGGGT
T ss_pred HHHh-CCCCCEEEEECCCcceEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCcEEEEecCcccCcCCCCCeEeecccc
Confidence 4566 899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCCCcccHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhcc
Q 032505 82 DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEF 137 (139)
Q Consensus 82 ~~W~p~~~i~~iL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~~r~~~~~~a~ 137 (139)
++|+|+++|.+||.+|+++|.+|++++|+|.+||++|++| ++|.++||+++++||+
T Consensus 94 ~~W~p~~~i~~vl~~i~~ll~~pn~~~p~n~~aa~~~~~~~~~f~~~~~~~~~~~a~ 150 (150)
T 1z2u_A 94 SQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRERYNQLAREWTQKYAM 150 (150)
T ss_dssp TTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHCC
T ss_pred CCCCCCCCHHHHHHHHHHHhhCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999 9999999999999995
No 6
>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL conjugation pathway; HET: CME; 1.94A {Homo sapiens} SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A
Probab=100.00 E-value=1.7e-49 Score=286.37 Aligned_cols=135 Identities=39% Similarity=0.726 Sum_probs=131.6
Q ss_pred cccccCCCCCeEEeeCCCCceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccccCCcccCCCcEeeecCC
Q 032505 2 SLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQ 81 (139)
Q Consensus 2 ~l~~~~~~~gi~~~p~~~~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~Hpni~~~G~icl~~l~ 81 (139)
+|++ ++++||++.|.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||||+.+|.||+++|.
T Consensus 30 ~l~~-~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegg~f~l~i~fp~~YP~~PP~v~F~T~i~HPnV~~~G~ICl~iL~ 108 (165)
T 2c4o_A 30 DLAR-DPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILR 108 (165)
T ss_dssp HHHS-SCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCBTTBCTTCBBCCGGGT
T ss_pred HHHh-CCCCCEEEEEcCCCcceeEEEEECCCCCCccCceEEEEEECCCcCCCCCCEEEEecCCcCCcCCCCCeEeehhhc
Confidence 4566 899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCCCcccHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhcc
Q 032505 82 DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEF 137 (139)
Q Consensus 82 ~~W~p~~~i~~iL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~~r~~~~~~a~ 137 (139)
++|+|+++|.+||.+|+++|.+|++++|+|.+||.+|++| ++|.++||+|+++||+
T Consensus 109 ~~W~P~~ti~~vL~si~~ll~~pn~~~P~n~~aa~~~~~d~~~y~~~ar~~~~~~a~ 165 (165)
T 2c4o_A 109 SQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYAM 165 (165)
T ss_dssp TTCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHHTTC
T ss_pred CCCCCcCcHHHHHHHHHHHHhCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999 9999999999999995
No 7
>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A
Probab=100.00 E-value=1.7e-49 Score=282.94 Aligned_cols=136 Identities=43% Similarity=0.712 Sum_probs=131.7
Q ss_pred cccccCCCCCeEEeeCCCCceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccccCCcccCCCcEeeecCC
Q 032505 2 SLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQ 81 (139)
Q Consensus 2 ~l~~~~~~~gi~~~p~~~~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~Hpni~~~G~icl~~l~ 81 (139)
+|++ ++++||++.|.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+.+|.||+++|.
T Consensus 15 ~l~~-~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~G~iCl~iL~ 93 (152)
T 2aak_A 15 RLQQ-DPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ 93 (152)
T ss_dssp HHHH-SCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBCTTSBBCCGGGT
T ss_pred HHHh-CCCCCEEEEeCCCCccEEEEEEeCCCCCCccCCEEEEEEECCCCCCCCCCEEEEecCcccCCCCCCCEEechhhc
Confidence 4566 889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCCCcccHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhccC
Q 032505 82 DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEFE 138 (139)
Q Consensus 82 ~~W~p~~~i~~iL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~~r~~~~~~a~~ 138 (139)
++|+|+++|.+||.+|+++|.+|++++|+|.+||++|++| ++|.++||+++++||.+
T Consensus 94 ~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~~~~~~~~a~~ 151 (152)
T 2aak_A 94 NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMYSESKREYNRRVRDVVEQSWTA 151 (152)
T ss_dssp TSCCTTCCHHHHHHHHHHHHTSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHHHCC-
T ss_pred CCCCCCCcHHHHHHHHHHHHhCCCCCccccHHHHHHHHHCHHHHHHHHHHHHHHHccc
Confidence 9999999999999999999999999999999999999999 99999999999999976
No 8
>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=100.00 E-value=9.6e-50 Score=288.65 Aligned_cols=136 Identities=42% Similarity=0.692 Sum_probs=132.1
Q ss_pred cccccCCCCCeEEeeCCCCceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccccCCcccCCCcEeeecCC
Q 032505 2 SLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQ 81 (139)
Q Consensus 2 ~l~~~~~~~gi~~~p~~~~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~Hpni~~~G~icl~~l~ 81 (139)
+|++ ++++||++.|.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||||+.+|.||+++|.
T Consensus 15 ~l~~-~~~~gi~~~p~~~nl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~v~F~t~i~HPNI~~~G~ICl~iL~ 93 (169)
T 1ayz_A 15 RMKE-DAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNVYANGEICLDILQ 93 (169)
T ss_dssp HHHH-SCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBCTTSBBCCGGGT
T ss_pred HHHh-CCCCCEEEEecCCccccceEEEECCCCCCcCCCEEEEEEECcccCCCCCCccccccCCccCCCCCCCeEeehhhc
Confidence 4566 899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCCCcccHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhccC
Q 032505 82 DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEFE 138 (139)
Q Consensus 82 ~~W~p~~~i~~iL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~~r~~~~~~a~~ 138 (139)
+.|+|+++|.+||.+|++||.+|++++|+|.+||++|+++ ++|.++||+|+++||.+
T Consensus 94 ~~WsP~~~i~~vL~si~~ll~~Pn~~~P~n~~aa~~~~~d~~~y~~~~r~~~~~~a~~ 151 (169)
T 1ayz_A 94 NRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFKDHKSQYVKRVKETVEKSWED 151 (169)
T ss_dssp TTCCTTCCHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCcCcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHCHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999999999999999999 99999999999999964
No 9
>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=1.1e-49 Score=285.61 Aligned_cols=134 Identities=36% Similarity=0.593 Sum_probs=130.8
Q ss_pred cccccCCCCCeEEeeCCCCceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccccCCcccCCCcEeeecCC
Q 032505 2 SLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQ 81 (139)
Q Consensus 2 ~l~~~~~~~gi~~~p~~~~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~Hpni~~~G~icl~~l~ 81 (139)
+|++ ++++||++.+.++|+++|+++|.||+||||+||+|+++|.||++||++||+|+|.|++|||||+.+|.||+++|.
T Consensus 24 ~l~~-~~~~gi~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~G~iCl~iL~ 102 (158)
T 1zdn_A 24 TLTA-DPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHPNVGANGEICVNVLK 102 (158)
T ss_dssp HHHH-SCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBCTTSBBCHHHHT
T ss_pred HHHh-CCCCCEEEEECCCChhheeEEEECCCCCCccCcEEEEEEEcCCCCCCCCCEEEeccCcccCCCCCCCEEehhhcC
Confidence 4566 899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCCCcccHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhc
Q 032505 82 DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGE 136 (139)
Q Consensus 82 ~~W~p~~~i~~iL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~~r~~~~~~a 136 (139)
++|+|+++|.+||.+|+++|.+|++++|+|.+||++|++| ++|.++||+||++||
T Consensus 103 ~~W~p~~~i~~vL~~i~~ll~~pn~~~p~n~~aa~~~~~d~~~f~~~a~~~t~~~A 158 (158)
T 1zdn_A 103 RDWTAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYAARARLLTEIHG 158 (158)
T ss_dssp TTCCTTCCHHHHHHHHHHHHHSCCGGGCSSHHHHHHHHHCHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999 999999999999997
No 10
>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=3.2e-49 Score=285.97 Aligned_cols=137 Identities=31% Similarity=0.567 Sum_probs=132.7
Q ss_pred cccccCCCCCeEEeeCCCCceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccccCCcccCCCcEeeecCC
Q 032505 2 SLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQ 81 (139)
Q Consensus 2 ~l~~~~~~~gi~~~p~~~~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~Hpni~~~G~icl~~l~ 81 (139)
+|++ ++++||++.+.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+.+|.||+++|.
T Consensus 15 ~l~~-~~~~gi~~~~~~~~l~~w~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPNv~~~G~iCl~iL~ 93 (169)
T 1yh2_A 15 MLAT-EPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPNIDSAGRICLDVLK 93 (169)
T ss_dssp HHHH-SCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCTTCBBCCGGGS
T ss_pred HHHh-CCCCCEEEEeCCCchheEEEEEECCCCCCccCCEEEEEEEeCCCCCCCCcEEEeecCCccccCCcCCeEeccccc
Confidence 4566 899999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ----CcCCCcccHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhccCC
Q 032505 82 ----DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEFES 139 (139)
Q Consensus 82 ----~~W~p~~~i~~iL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~~r~~~~~~a~~~ 139 (139)
++|+|+++|.+||.+|+++|.+|++++|+|.+||++|++| ++|.++||+|+++||+.+
T Consensus 94 ~~~~~~W~p~~~i~~vL~si~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~r~~~~~~a~~~ 156 (169)
T 1yh2_A 94 LPPKGAWRPSLNIATVLTSIQLLMSEPNPDDPLMADISSEFKYNKPAFLKNARQWTEKHARQK 156 (169)
T ss_dssp CTTTSCCCTTSCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHSCCC
T ss_pred CCcccCCCCCCcHHHHHHHHHHHHhCCCCcchHhHHHHHHHHhhHHHHHHHHHHHHHHHcccc
Confidence 8999999999999999999999999999999999999999 999999999999999863
No 11
>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A
Probab=100.00 E-value=7.7e-50 Score=283.92 Aligned_cols=135 Identities=31% Similarity=0.561 Sum_probs=130.8
Q ss_pred cccccCCCCCeEEeeCCC-CceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccccCCcccC-CCcEeeec
Q 032505 2 SLMMSGGDLGVSAFPEGE-SIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQ-YGNICLDI 79 (139)
Q Consensus 2 ~l~~~~~~~gi~~~p~~~-~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~Hpni~~-~G~icl~~ 79 (139)
+|++ ++++||++.+.++ |+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+. +|.||+++
T Consensus 12 ~l~~-~~~~~i~~~~~~~~~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPni~~~~G~iCl~i 90 (149)
T 1fxt_A 12 AVKD-DPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVTGAICLDI 90 (149)
T ss_dssp HHHH-CGGGCCEEEESSSSCSSEEEEEEECCSSSTTCSSEEEEEEECCTTTTSSCCEEEESSCCCBTTBCSSSCCBCCHH
T ss_pred HHHh-CCCCCEEEEECCCCCceEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEeCCCccCCCcCCCCeEeCCc
Confidence 4566 8899999999887 9999999999999999999999999999999999999999999999999999 99999999
Q ss_pred CCCcCCCcccHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhcc
Q 032505 80 LQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEF 137 (139)
Q Consensus 80 l~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~~r~~~~~~a~ 137 (139)
|.++|+|+++|.+||.+|+++|.+|++++|+|.+||++|++| ++|.++||+|+++||+
T Consensus 91 L~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~d~~~f~~~a~~~~~~~a~ 149 (149)
T 1fxt_A 91 LKNAWSPVITLKSALISLQALLQSPEPNDPQDAEVAQHYLRDRESFNKTAALWTRLYAS 149 (149)
T ss_dssp HHTSCCTTCCHHHHHHHHHHHHHSCCSSSCSSHHHHHHHHHCSSHHHHHHHHHHHHHCC
T ss_pred CCCCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999 9999999999999985
No 12
>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A 2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F
Probab=100.00 E-value=1.2e-49 Score=284.64 Aligned_cols=136 Identities=35% Similarity=0.585 Sum_probs=132.3
Q ss_pred cccccCCCCCeEEeeCCCCceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccccCCcccCCCcEeeecCC
Q 032505 2 SLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQ 81 (139)
Q Consensus 2 ~l~~~~~~~gi~~~p~~~~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~Hpni~~~G~icl~~l~ 81 (139)
+|++ ++++||++.|.++|+++|+++|.||+||||+||+|+++|.||++||++||+|+|.|++|||||+.+|.||+++|.
T Consensus 16 ~l~~-~~~~~i~~~~~~~~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~G~iCl~iL~ 94 (155)
T 1jat_A 16 KLVS-DPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDRLGRICLDVLK 94 (155)
T ss_dssp HHHH-SCCTTEEEEEETTEEEEEEEEEECCTTSTTTTEEEEEEEECCTTTTTSCCEEEECSCCCBTTBCTTCCBCCGGGT
T ss_pred HHHh-CCCCCEEEEECCCchhEEEEEEECCCCCCccCcEEEEEEEcCCCCCCCCCcceeecccccCCCCCCCEEEchhhc
Confidence 4566 899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCCCcccHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhccC
Q 032505 82 DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEFE 138 (139)
Q Consensus 82 ~~W~p~~~i~~iL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~~r~~~~~~a~~ 138 (139)
++|+|+++|.+||.+|+++|.+|++++|+|.+||++|++| ++|.++||+|+++||++
T Consensus 95 ~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~r~~~~~~a~~ 152 (155)
T 1jat_A 95 TNWSPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIKNEQGAKAKAREWTKLYAKK 152 (155)
T ss_dssp TTCCTTCCHHHHHHHHHHHHHSCCTTSTTCCTTHHHHHHCHHHHHHHHHHHHHHHSEE
T ss_pred cCCCCCCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhccc
Confidence 9999999999999999999999999999999999999999 99999999999999975
No 13
>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin carrier protein, thioester ligase; 2.00A {Spisula solidissima} SCOP: d.20.1.1
Probab=100.00 E-value=4.8e-49 Score=281.77 Aligned_cols=136 Identities=55% Similarity=1.101 Sum_probs=131.0
Q ss_pred cccccCCCCCeEEeeCCCCceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccccCCcccCCCcEeeecCC
Q 032505 2 SLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQ 81 (139)
Q Consensus 2 ~l~~~~~~~gi~~~p~~~~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~Hpni~~~G~icl~~l~ 81 (139)
+|++ ++++||++.|.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+.+|.||+++|.
T Consensus 20 ~l~~-~~~~~i~~~p~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~G~iCl~iL~ 98 (156)
T 2e2c_A 20 TLLM-SGDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPCWHPNVDQSGNICLDILK 98 (156)
T ss_dssp HHHH-HCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCTTCBBCCGGGT
T ss_pred HHHh-CCCCCEEEEECCCCccEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEeCCcccCCCccCceEECcccc
Confidence 4556 789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCCCcccHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhccCC
Q 032505 82 DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEFES 139 (139)
Q Consensus 82 ~~W~p~~~i~~iL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~~r~~~~~~a~~~ 139 (139)
++|+|+++|.+||.+|+++|.+|++++|+|.+||++| +| ++|.++||+|+++||.++
T Consensus 99 ~~W~p~~~i~~vL~si~~ll~~pn~~~p~n~~aa~~~-~d~~~y~~~~~~~~~~~~~~~ 156 (156)
T 2e2c_A 99 ENWTASYDVRTILLSLQSLLGEPNNASPLNAQAADMW-SNQTEYKKVLHEKYKTAQSDK 156 (156)
T ss_dssp TTCCTTCCHHHHHHHHHHHTTSCCCSSCSCHHHHHHT-TCHHHHHHHHHHHHHHHHHCC
T ss_pred ccCCCCCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHh-cCHHHHHHHHHHHHHHhccCC
Confidence 9999999999999999999999999999999999999 78 999999999999999763
No 14
>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase, yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=100.00 E-value=1.1e-48 Score=282.16 Aligned_cols=136 Identities=32% Similarity=0.595 Sum_probs=130.4
Q ss_pred cccccCCCCCeEEeeCC-CCceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccccCCcccCCCcEeeecC
Q 032505 2 SLMMSGGDLGVSAFPEG-ESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDIL 80 (139)
Q Consensus 2 ~l~~~~~~~gi~~~p~~-~~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~Hpni~~~G~icl~~l 80 (139)
+|++ ++++||++.|.+ +|+++|+++|.||+||||+||+|+++|.||++||++||+|+|.|++|||||+.+|.||+++|
T Consensus 15 ~l~~-~~~~gi~~~~~~~~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPNv~~~G~iCl~iL 93 (165)
T 2ucz_A 15 QLIK-DSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSILHPNIYPNGEVCISIL 93 (165)
T ss_dssp HHHH-SCCTTEEEEESSSSCCSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCSCTTBCTTSBBCCGGG
T ss_pred HHHh-CCCCCEEEEECCCCCccEEEEEEECCCCCCccCcEEEEEEECCccCCCCCCEEEEeCCCccCCCCCCCcEeehhh
Confidence 4566 899999999975 79999999999999999999999999999999999999999999999999999999999999
Q ss_pred -------------CCcCCCcccHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhccC
Q 032505 81 -------------QDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEFE 138 (139)
Q Consensus 81 -------------~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~~r~~~~~~a~~ 138 (139)
.++|+|+++|++||.+|++||.+|++++|+|.+||.+|++| ++|.++||+++++++.+
T Consensus 94 ~~~~~~~~~~~~~~~~W~p~~~i~~vL~si~~ll~~Pn~~~p~n~~aa~~~~~~~~~y~~~v~~~~~~~~~~ 165 (165)
T 2ucz_A 94 HSPGDDPNMYELAEERWSPVQSVEKILLSVMSMLSEPNIESGANIDACILWRDNRPEFERQVKLSILKSLGF 165 (165)
T ss_dssp SCCCSCTTSTTTTTTSCCTTCCHHHHHHHHHHHHHSCCGGGCCCHHHHHHHHTTHHHHHHHHHHHHHHHTTC
T ss_pred CCccccccccCCCCCCCCCcCcHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHHhhC
Confidence 68999999999999999999999999999999999999999 99999999999999864
No 15
>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein interaction, protein ligase complex; HET: DNA; 1.90A {Schizosaccharomyces pombe} SCOP: d.20.1.1
Probab=100.00 E-value=1.1e-48 Score=281.55 Aligned_cols=134 Identities=35% Similarity=0.627 Sum_probs=129.3
Q ss_pred cccccCCCCCeEEeeCCC-----CceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccccCCcccCCCcEe
Q 032505 2 SLMMSGGDLGVSAFPEGE-----SIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNIC 76 (139)
Q Consensus 2 ~l~~~~~~~gi~~~p~~~-----~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~Hpni~~~G~ic 76 (139)
+|++ ++++||++.|.++ |+++|+++|.||+||||+||+|+++|.||++||++||+|+|.|++|||||+.+|.||
T Consensus 21 ~l~~-~~p~gi~~~p~~~~d~~~nl~~W~~~I~Gp~~Tpyegg~f~l~i~fp~~YP~~pP~v~F~t~i~HPnV~~~G~iC 99 (163)
T 3rcz_B 21 QWRR-DHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTPPLFHPNVYPSGTVC 99 (163)
T ss_dssp HHHH-SCCTTCEEEEEECTTSSEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCSTTBCTTSBBC
T ss_pred HHHh-CCCCCEEEEEccCcCCCCCccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCEEEEeCCCccCCCCCCCcEe
Confidence 4667 9999999999866 999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCc--CCCcccHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhc
Q 032505 77 LDILQDK--WSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGE 136 (139)
Q Consensus 77 l~~l~~~--W~p~~~i~~iL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~~r~~~~~~a 136 (139)
+++|... |+|+++|++||.+|+++|.+|++++|+|.+||++|++| ++|.++||+|+++||
T Consensus 100 l~iL~~~~~W~p~~ti~~vL~~i~~ll~~P~~~~p~n~~aa~~~~~d~~~y~~~~r~~~~~ya 162 (163)
T 3rcz_B 100 LSILNEEEGWKPAITIKQILLGIQDLLDDPNIASPAQTEAYTMFKKDKVEYEKRVRAQARENA 162 (163)
T ss_dssp CGGGCTTTTCCTTCCHHHHHHHHHHHHTSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHTC
T ss_pred ccccCCCCCcCCcCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHhC
Confidence 9999764 99999999999999999999999999999999999999 999999999999998
No 16
>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 3fsh_A 2cyx_A 2kly_A
Probab=100.00 E-value=2e-48 Score=280.45 Aligned_cols=135 Identities=34% Similarity=0.609 Sum_probs=129.9
Q ss_pred cccccCCCCCeEEeeCCC-CceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccccCCcccCCCcEeeecC
Q 032505 2 SLMMSGGDLGVSAFPEGE-SIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDIL 80 (139)
Q Consensus 2 ~l~~~~~~~gi~~~p~~~-~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~Hpni~~~G~icl~~l 80 (139)
+|++ ++++||++.|.++ |+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+.+|.||+++|
T Consensus 14 ~l~~-~~~~gi~~~~~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPNV~~~G~iCl~iL 92 (164)
T 3h8k_A 14 QLTL-NPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISIL 92 (164)
T ss_dssp HHHH-SCCTTEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTTBCTTSBBCCGGG
T ss_pred HHHh-CCCCCEEEEECCCCCccEEEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEcCCCccCCCCCCCcEeeecc
Confidence 4566 8999999999876 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred C-------------CcCCCcccHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhcc
Q 032505 81 Q-------------DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEF 137 (139)
Q Consensus 81 ~-------------~~W~p~~~i~~iL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~~r~~~~~~a~ 137 (139)
. ++|+|++||++||.+|+++|.+|++++|+|.+||.+|++| ++|.++||+++++++.
T Consensus 93 ~~~~~~~~~~~~~~~~W~p~~ti~~vL~~i~~ll~~pn~~~p~n~~aa~~~~~~~~~f~~~~~~~~~~s~~ 163 (164)
T 3h8k_A 93 HAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKIAKQIVQKSLG 163 (164)
T ss_dssp SCSCSCCCSCCTTCCCCCTTCCHHHHHHHHHHHHHSCCCSSCSSHHHHHHHHHCHHHHHHHHHHHHHHHHT
T ss_pred cCcccccccccccccCCCCCCcHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHhhc
Confidence 7 7899999999999999999999999999999999999999 9999999999999874
No 17
>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721, structural genomics, structural genomics consortium, SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1
Probab=100.00 E-value=1.6e-48 Score=287.34 Aligned_cols=129 Identities=40% Similarity=0.667 Sum_probs=125.2
Q ss_pred CCeEEeeCCCCceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccccCCcccC-CCcEeeecCCCcCCCcc
Q 032505 10 LGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQ-YGNICLDILQDKWSSAY 88 (139)
Q Consensus 10 ~gi~~~p~~~~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~Hpni~~-~G~icl~~l~~~W~p~~ 88 (139)
+||++.+.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||||+. +|.||+++|.++|+|++
T Consensus 63 ~gi~v~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNI~~~~G~ICL~iL~~~WsP~~ 142 (193)
T 2f4z_A 63 HGVSAQIVGGDIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPKMKFVTKIWHPNISSQTGAICLDILKHEWSPAL 142 (193)
T ss_dssp -CEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBCTTTCBBCCGGGTTTCCTTS
T ss_pred CcEEEEEcCCCcceEEEEEeCCCCCCcCCCEEEEEEECCCcCCCCCCeEEEecCCccCCCcCCCCEEECccccccCCCCC
Confidence 79999999999999999999999999999999999999999999999999999999999994 99999999999999999
Q ss_pred cHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhccC
Q 032505 89 DCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEFE 138 (139)
Q Consensus 89 ~i~~iL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~~r~~~~~~a~~ 138 (139)
+|.+||++|++||.+|++++|+|.+||++|++| ++|.++||+|+++||.|
T Consensus 143 ti~~vL~sI~sll~~pnp~~P~n~~aa~l~~~d~~~f~~~ar~~t~~ya~~ 193 (193)
T 2f4z_A 143 TIRTALLSIQAMLADPVPTDPQDAEVAKMMIENHPLFVQTAKLWTETFAKE 193 (193)
T ss_dssp CHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHCC-
T ss_pred CHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHHccC
Confidence 999999999999999999999999999999999 99999999999999975
No 18
>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation pathway; 1.60A {Homo sapiens} PDB: 1y6l_A
Probab=100.00 E-value=3.3e-48 Score=285.95 Aligned_cols=135 Identities=37% Similarity=0.634 Sum_probs=131.5
Q ss_pred cccccCCCCCeEEeeCCCCceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccccCCcccCCCcEeeecCC
Q 032505 2 SLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQ 81 (139)
Q Consensus 2 ~l~~~~~~~gi~~~p~~~~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~Hpni~~~G~icl~~l~ 81 (139)
+|++ ++++||++.|.++|+++|+++|.||+||||+||+|+|+|.||++||++||+|+|.|++|||||+.+|.||+++|.
T Consensus 59 ~l~~-~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNV~~~G~ICL~iL~ 137 (194)
T 3bzh_A 59 DITL-DPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNINSQGVICLDILK 137 (194)
T ss_dssp HHHH-SCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBCTTCBBCCGGGT
T ss_pred HHHh-CCCCCceeecccCccccceEEEeCCCCCCccCCEEEEEEECCCcCCCCCccccccCCCccceECCCCceechhhh
Confidence 4566 899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCCCcccHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhcc
Q 032505 82 DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEF 137 (139)
Q Consensus 82 ~~W~p~~~i~~iL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~~r~~~~~~a~ 137 (139)
++|+|+++|.+||.+|++||.+|++++|+|.+||.+|++| ++|.++||+|+++||+
T Consensus 138 ~~WsP~~ti~~vL~sI~~ll~~pnp~~Pln~~aa~l~~~d~~~f~~~ar~~t~~ya~ 194 (194)
T 3bzh_A 138 DNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTKRYAT 194 (194)
T ss_dssp TTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHCC
T ss_pred ccCCCcCcHHHHHHHHHHHHhCCCCccchhHHHHHHHHHCHHHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999999999999999 9999999999999985
No 19
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}
Probab=100.00 E-value=1.6e-48 Score=291.70 Aligned_cols=136 Identities=35% Similarity=0.661 Sum_probs=131.7
Q ss_pred cccccCCCCCeEEeeCCCCceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccccCCcccC-CCcEeeecC
Q 032505 2 SLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQ-YGNICLDIL 80 (139)
Q Consensus 2 ~l~~~~~~~gi~~~p~~~~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~Hpni~~-~G~icl~~l 80 (139)
+|++ ++++||++.|.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||||+. +|.||+++|
T Consensus 34 ~l~~-~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~T~i~HPNI~~~~G~ICL~iL 112 (216)
T 2pwq_A 34 DIEN-ENVQEIDAHIKDSNFFEWVGFIKGPEGTPYEGGHFTLAITIPNDYPYNPPKIKFVTKIWHPNISSQTGAICLDVL 112 (216)
T ss_dssp HHHH-SCTTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCTTTCBBCCHHH
T ss_pred HHHh-CCCCCEEEEEcCCccceeEEEEeCCCCCCccceEEEEEEECCCcCCCCCCcccccCCCcCCCCcCCCCEEEchhh
Confidence 4566 88999999999999999999999999999999999999999999999999999999999999995 999999999
Q ss_pred CCcCCCcccHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhccC
Q 032505 81 QDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEFE 138 (139)
Q Consensus 81 ~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~~r~~~~~~a~~ 138 (139)
.+.|+|+++|.+||.+|++||.+|++++|+|.+||++|++| ++|.++||+|+++||..
T Consensus 113 ~~~WsP~~ti~~VL~sI~sLL~~Pnp~dPln~eaa~~~~~d~~~f~~~ar~~t~~ya~~ 171 (216)
T 2pwq_A 113 KNEWSPALTIRTALLSIQALLSDPQPDDPQDAEVAKMYKENHALFVKTASVWTKTFATG 171 (216)
T ss_dssp HHHCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHSCC
T ss_pred cccCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999 99999999999999975
No 20
>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3, crystallography, ligase; 1.75A {Saccharomyces cerevisiae} PDB: 2eke_A 3ong_B
Probab=100.00 E-value=3.2e-48 Score=277.77 Aligned_cols=135 Identities=34% Similarity=0.581 Sum_probs=129.6
Q ss_pred cccccCCCCCeEEeeCC-----CCceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccccCCcccCCCcEe
Q 032505 2 SLMMSGGDLGVSAFPEG-----ESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNIC 76 (139)
Q Consensus 2 ~l~~~~~~~gi~~~p~~-----~~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~Hpni~~~G~ic 76 (139)
+|++ ++++||++.|.. +|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+.+|.||
T Consensus 15 ~l~~-~~~~g~~~~p~~~~~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~G~iC 93 (157)
T 2gjd_A 15 KWRK-DHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAGFYHPNVYPSGTIC 93 (157)
T ss_dssp HHHH-CCCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTBEEEEEEECCTTTTTSCCEEECCTTCCCTTBCTTSBBC
T ss_pred HHHh-CCCCCEEEEeccccCCCCcccEEEEEEECCCCCCcCCeEEEEEEEcCCCCCCCCCeeeccCCCccCCCCCCCcEe
Confidence 4666 899999999874 4899999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCC--cCCCcccHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhcc
Q 032505 77 LDILQD--KWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEF 137 (139)
Q Consensus 77 l~~l~~--~W~p~~~i~~iL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~~r~~~~~~a~ 137 (139)
+++|.. +|+|+++|.+||.+|+++|.+|++++|+|.+||++|++| ++|.++||+++++||+
T Consensus 94 l~iL~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~~~~~~~~a~ 157 (157)
T 2gjd_A 94 LSILNEDQDWRPAITLKQIVLGVQDLLDSPNPNSPAQEPAWRSFSRNKAEYDKKVLLQAKQYSK 157 (157)
T ss_dssp CGGGCTTTTCCTTCCHHHHHHHHHHHHTSCCTTCCCCHHHHHHHHHCHHHHHHHHHHHHHHTBC
T ss_pred eecccCCCCCCCCCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHhcC
Confidence 999987 799999999999999999999999999999999999999 9999999999999995
No 21
>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating enzyme, protein degradatio structural proteomics in europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB: 2bf8_A
Probab=100.00 E-value=4.1e-48 Score=277.69 Aligned_cols=130 Identities=34% Similarity=0.603 Sum_probs=127.3
Q ss_pred CCCCeEEeeCCCCceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccccCCcccC-CCcEeeecCCCcCCC
Q 032505 8 GDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQ-YGNICLDILQDKWSS 86 (139)
Q Consensus 8 ~~~gi~~~p~~~~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~Hpni~~-~G~icl~~l~~~W~p 86 (139)
+++||++.+.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+. +|.||+++|.++|+|
T Consensus 27 ~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPni~~~~G~iCl~iL~~~W~p 106 (159)
T 2bep_A 27 SKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAA 106 (159)
T ss_dssp HTTSEEEEECSSSSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCTTTCBBCCGGGTTTCCT
T ss_pred CCCCEEEEeCCCchheEEEEEECCCCCCccCCEEEEEEeCCCcCCCCCCEEEeeCCCCccCCCCCCCEEeChhhhccCCC
Confidence 5789999999999999999999999999999999999999999999999999999999999995 999999999999999
Q ss_pred cccHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhcc
Q 032505 87 AYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEF 137 (139)
Q Consensus 87 ~~~i~~iL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~~r~~~~~~a~ 137 (139)
+++|.+||.+|+++|.+|++++|+|.+||++|++| ++|.++||+|+++||.
T Consensus 107 ~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~~~a~ 158 (159)
T 2bep_A 107 AMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAG 158 (159)
T ss_dssp TCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHSC
T ss_pred CCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999 9999999999999996
No 22
>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=2.9e-48 Score=283.05 Aligned_cols=136 Identities=58% Similarity=1.024 Sum_probs=130.1
Q ss_pred cccccCCCCCeEEeeCCCCceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccccCCcccCCCcEeeecCC
Q 032505 2 SLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQ 81 (139)
Q Consensus 2 ~l~~~~~~~gi~~~p~~~~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~Hpni~~~G~icl~~l~ 81 (139)
+|++ ++++||++.|.++|+++|+++|.||+||||+||+|+++|.||++||++||+|+|.|++|||||+.+|.||+++|.
T Consensus 41 ~l~~-~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNV~~~G~ICL~iL~ 119 (179)
T 1i7k_A 41 TLMM-SGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNISLDILK 119 (179)
T ss_dssp HHHH-HCCTTEEEEEETTEEEEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEESSCCCSTTBCTTCBBCCGGGT
T ss_pred HHHh-CCCCCEEEEEcCCcccccEEEEECCCCCCcCCCEEEEEEECCCcCCCCCceEEEecCCccCccccCCeEEcccCc
Confidence 4556 789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCCCcccHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhccCC
Q 032505 82 DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEFES 139 (139)
Q Consensus 82 ~~W~p~~~i~~iL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~~r~~~~~~a~~~ 139 (139)
+.|+|+++|.+||.+|++||.+|++++|+|.+||++| +| ++|.++|++++++++..+
T Consensus 120 ~~WsP~~ti~~vL~sI~sll~~Pn~~~Pln~~aa~l~-~d~~~f~~~v~~~v~~~~~~~ 177 (179)
T 1i7k_A 120 EKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELW-KNPTAFKKYLQETYSKQVTSQ 177 (179)
T ss_dssp TTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHT-TSHHHHHHHHHHHHHTTCC--
T ss_pred CcCCCCCCHHHHHHHHHHHHhCCCCcchhhHHHHHHh-hCHHHHHHHHHHHHHHHhccc
Confidence 9999999999999999999999999999999999999 88 999999999999998753
No 23
>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A
Probab=100.00 E-value=9.8e-48 Score=274.67 Aligned_cols=135 Identities=28% Similarity=0.539 Sum_probs=130.7
Q ss_pred cccccCCCCCeEE-eeCCCCceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccccCCcccCCCcEeeecC
Q 032505 2 SLMMSGGDLGVSA-FPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDIL 80 (139)
Q Consensus 2 ~l~~~~~~~gi~~-~p~~~~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~Hpni~~~G~icl~~l 80 (139)
+|++ ++++||++ .++++|+++|+++|. |++|||+||+|+++|.||++||++||+|+|.|++|||||+.+|.||+++|
T Consensus 15 ~l~~-~~~~~i~~~~~~~~~l~~w~~~I~-P~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnV~~~G~iCl~iL 92 (155)
T 1wzv_A 15 DLQK-KPPPYLRNLSSDDANVLVWHALLL-PDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVDENGQICLPII 92 (155)
T ss_dssp HHHH-SCCTTEEEEEECSSCTTEEEEEEC-CCSTTGGGEEEEEEEECCTTTTSSCCEEEESSCCCBTTBCTTCBCCCGGG
T ss_pred HHHh-CCCCCEEEEecCCCchheEEEEEc-CCCCCCCCCEEEEEEECCCCCCCCCCcceeeCCCccCcCCCCCeEeecCC
Confidence 4566 88999999 888999999999999 99999999999999999999999999999999999999999999999999
Q ss_pred -CCcCCCcccHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhccC
Q 032505 81 -QDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEFE 138 (139)
Q Consensus 81 -~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~~r~~~~~~a~~ 138 (139)
.++|+|+++|.+||.+|+++|.+|++++|+|.+||++|++| ++|.++||+++++||++
T Consensus 93 ~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~r~~~~~~a~~ 152 (155)
T 1wzv_A 93 SSENWKPCTKTCQVLEALNVLVNRPNIREPLRMDLADLLTQNPELFRKNAEEFTLRFGVD 152 (155)
T ss_dssp CTTTCCTTCCHHHHHHHHHHHHHSCCSSSCSSHHHHHHHHHCHHHHHHHHHHHHHHHCEE
T ss_pred CccCCCCCCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 89999999999999999999999999999999999999999 99999999999999975
No 24
>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A 1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A
Probab=100.00 E-value=1.3e-47 Score=275.63 Aligned_cols=136 Identities=38% Similarity=0.606 Sum_probs=129.5
Q ss_pred cccccCCCCCeEEeeCC-----CCceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccccCCcccCCCcEe
Q 032505 2 SLMMSGGDLGVSAFPEG-----ESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNIC 76 (139)
Q Consensus 2 ~l~~~~~~~gi~~~p~~-----~~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~Hpni~~~G~ic 76 (139)
+|++ ++++||++.|.. +|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+.+|.||
T Consensus 18 ~l~~-~~~~g~~~~p~~~~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~G~iC 96 (161)
T 2grr_A 18 AWRK-DHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVC 96 (161)
T ss_dssp HHHH-SCCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCSTTBCTTSBBC
T ss_pred HHHh-CCCCCEEEEeccccCCCCCccEEEEEEECCCCCCccCCEEEEEEEcCcccCCCCCEEEEecCcccCCCCCCCeEe
Confidence 4566 899999999863 6899999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCC--cCCCcccHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhccC
Q 032505 77 LDILQD--KWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEFE 138 (139)
Q Consensus 77 l~~l~~--~W~p~~~i~~iL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~~r~~~~~~a~~ 138 (139)
+++|.. +|+|+++|.+||.+|+++|.+|++++|+|.+||.+|++| ++|.++||+++++||.+
T Consensus 97 l~iL~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~~~~~~~~a~~ 161 (161)
T 2grr_A 97 LSILEEDKDWRPAITIKQILLGIQELLNEPNIQSPAQAEAYTIYCQNRVEYEKRVRAQAKKFAPS 161 (161)
T ss_dssp CGGGCTTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHTCC-
T ss_pred ehhcCCCCCcCCCCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHHhcC
Confidence 999976 899999999999999999999999999999999999999 99999999999999964
No 25
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=100.00 E-value=2.2e-47 Score=283.08 Aligned_cols=131 Identities=34% Similarity=0.598 Sum_probs=127.8
Q ss_pred CCCCeEEeeCCCCceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccccCCcccC-CCcEeeecCCCcCCC
Q 032505 8 GDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQ-YGNICLDILQDKWSS 86 (139)
Q Consensus 8 ~~~gi~~~p~~~~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~Hpni~~-~G~icl~~l~~~W~p 86 (139)
++.||++.|.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||||+. +|.||+++|.++|+|
T Consensus 24 ~~~~i~~~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~~~G~iCl~iL~~~W~p 103 (201)
T 3k9o_A 24 SKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAA 103 (201)
T ss_dssp HTTSEEEEECSTTSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBCTTTCBBCCGGGTTTCCT
T ss_pred CCCCEEEEECCCCccEEEEEEECCCCCCCCCCEEEEEEECCCcCCCCCCccccccCcccCCCcCCCCeeeCcccccCCCC
Confidence 4789999999999999999999999999999999999999999999999999999999999995 999999999999999
Q ss_pred cccHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhccC
Q 032505 87 AYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEFE 138 (139)
Q Consensus 87 ~~~i~~iL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~~r~~~~~~a~~ 138 (139)
+++|.+||.+|+++|.+|++++|+|.+||++|++| ++|.++||+|+++||..
T Consensus 104 ~~~i~~vL~~i~~ll~~p~p~~p~n~~aa~~~~~~~~~f~~~a~~~~~~~a~~ 156 (201)
T 3k9o_A 104 AMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAGA 156 (201)
T ss_dssp TCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHHCC
T ss_pred CCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999 99999999999999974
No 26
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1
Probab=100.00 E-value=1.2e-47 Score=286.73 Aligned_cols=136 Identities=32% Similarity=0.566 Sum_probs=130.6
Q ss_pred cccccCCCCCeEEeeCCC-CceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccccCCcccC-CCcEeeec
Q 032505 2 SLMMSGGDLGVSAFPEGE-SIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQ-YGNICLDI 79 (139)
Q Consensus 2 ~l~~~~~~~gi~~~p~~~-~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~Hpni~~-~G~icl~~ 79 (139)
+|++ ++++||++.|.++ ++++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||||+. +|.||+++
T Consensus 13 ~l~~-~~~~gi~~~p~~~~~l~~w~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~T~i~HPNI~~~~G~ICL~i 91 (215)
T 1tte_A 13 AVKD-DPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVTGAICLDI 91 (215)
T ss_dssp HHHT-TTCTTCEECCCSSSSCCEEEEECCEEEEETTEEECCEEEEECCSCSSSCCCEEEETTTCCCSSSCSSSSCCCSST
T ss_pred HHHh-CCCCCEEEEECCCccccccEEEEeCCCCCCcCCCEEEEEEeCCccCCCCCCcccccCCCccCcCcCCCCEEECcc
Confidence 4566 8999999999876 5679999999999999999999999999999999999999999999999999 99999999
Q ss_pred CCCcCCCcccHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhccC
Q 032505 80 LQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEFE 138 (139)
Q Consensus 80 l~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~~r~~~~~~a~~ 138 (139)
|.+.|+|++||.+||.+|++||.+|++++|+|.+||++|++| ++|.++||+|+++||..
T Consensus 92 L~~~WsP~~ti~~VL~sI~sLL~~Pnp~~Pln~eaa~~~~~d~~~f~~~ar~~t~~yA~~ 151 (215)
T 1tte_A 92 LRNAWSPVITLKSALISLQALLQSPEPNDPQDAEVAQHYLRDRESFNKTAALWTRLYASE 151 (215)
T ss_dssp TTCCSCTTCCHHHHHHHHHHHHTSCCCSSCSCHHHHHHHHHCHHHHHHHHHHHHHHSSCC
T ss_pred CCCCCCCcCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHhccC
Confidence 999999999999999999999999999999999999999999 99999999999999975
No 27
>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle, nucleotide-binding, UBL CON pathway; 2.50A {Homo sapiens} PDB: 2edi_A
Probab=100.00 E-value=9.4e-47 Score=272.52 Aligned_cols=134 Identities=24% Similarity=0.385 Sum_probs=127.5
Q ss_pred cccccCCCCCeEEeeC-CCCceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccccCCcccCCCcEeeecC
Q 032505 2 SLMMSGGDLGVSAFPE-GESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDIL 80 (139)
Q Consensus 2 ~l~~~~~~~gi~~~p~-~~~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~Hpni~~~G~icl~~l 80 (139)
+|++ ++++||++.+. ++|++.|+++| ||++|||+||+|+++|.||++||++||+|+|.|++|||||+.+|.||+++|
T Consensus 25 ~l~~-~~~~gi~~~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~~G~iCl~iL 102 (167)
T 3fn1_B 25 ELEA-NLPCTCKVHFPDPNKLHCFQLTV-TPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITETGEICLSLL 102 (167)
T ss_dssp HHGG-GSCTTEEEECSSSSCTTEEEEEE-CCSSSTTTTCCEEEEEECCTTBTTBCCEEEECSCCCCSSBCTTCCBCCGGG
T ss_pred HHHh-CCCCCEEEEeCCCCcceeEEEEE-CCCCCccCCCEEEEEEECCCCCCCCCCeeEecCCcccCCCCCCCEEechhh
Confidence 4666 89999999964 67899999998 899999999999999999999999999999999999999999999999999
Q ss_pred CC------cCCCcccHHHHHHHHHHhhCC-CCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhcc
Q 032505 81 QD------KWSSAYDCRTILLSIQSLLGE-PNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEF 137 (139)
Q Consensus 81 ~~------~W~p~~~i~~iL~~i~~ll~~-p~~~~p~N~~a~~~~~~~-~~f~~~~r~~~~~~a~ 137 (139)
.. +|+|+++|.+||.+|+++|.+ ||+++|+|.+||++|++| ++|.++||+|+++||+
T Consensus 103 ~~~~~~~~~W~p~~~i~~vl~~i~~ll~~~pn~~~p~n~eaa~~~~~~~~~f~~~~r~~~~~~A~ 167 (167)
T 3fn1_B 103 REHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRNKVDDYIKRYAR 167 (167)
T ss_dssp SBCSSSTTSBCTTCCHHHHHHHHHHTTTTTCCSSSCSCHHHHHHHHHCHHHHHHHHHHHHHHHCC
T ss_pred ccCCCCCCCCCCcCcHHHHHHHHHHHHcCCCCCCcchhHHHHHHHHHCHHHHHHHHHHHHHHhcC
Confidence 75 799999999999999999999 799999999999999999 9999999999999995
No 28
>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme domain, E2 domain, ligase-ligas inhibitor complex; HET: U94; 2.30A {Homo sapiens} PDB: 2ob4_A
Probab=100.00 E-value=9.3e-47 Score=276.12 Aligned_cols=135 Identities=36% Similarity=0.693 Sum_probs=128.6
Q ss_pred cccccCCCCCeEEe-eCCCCceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccccCCcccCCCcEeeecC
Q 032505 2 SLMMSGGDLGVSAF-PEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDIL 80 (139)
Q Consensus 2 ~l~~~~~~~gi~~~-p~~~~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~Hpni~~~G~icl~~l 80 (139)
+|++ ++++||++. ++++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+.+|.||+++|
T Consensus 18 ~l~~-~~~~gi~~~~~~~~nl~~W~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnV~~~G~iClsiL 96 (183)
T 3rz3_A 18 GLQE-EPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIYETGDVCISIL 96 (183)
T ss_dssp HHHH-SCCTTEEEEECTTCCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCCTTBCTTSBBCCTTC
T ss_pred HHHh-CCCCCEEEEecCccchhheeeeeeCCCCCCCCCCeEEEEEECCCCCCCCCCeeEecCCCccCCCCCCCcEehhhc
Confidence 4666 899999999 67889999999999999999999999999999999999999999999999999999999999999
Q ss_pred C-------------CcCCCcccHHHHHHHHHHhhCCCCCCCcccHHHHHHhhc------h-HHHHHHHHHHHHhhcc
Q 032505 81 Q-------------DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNN------K-EDYRKMVQKQYFAGEF 137 (139)
Q Consensus 81 ~-------------~~W~p~~~i~~iL~~i~~ll~~p~~~~p~N~~a~~~~~~------~-~~f~~~~r~~~~~~a~ 137 (139)
. ++|+|+++|++||++|++||.+||+++|+|.+||.+|++ + ++|.++||+++++++.
T Consensus 97 ~~~~~~~~~~~~~~~~W~p~~~i~~vL~si~~ll~~Pn~~~p~n~~aa~~~~~~~~~~~~~~~y~~~v~~~v~~s~~ 173 (183)
T 3rz3_A 97 HPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMYRKWKESKGKDREYTDIIRKQVLGTKV 173 (183)
T ss_dssp --------------CCCCTTCCHHHHHHHHHHHHHSCCCSSCSSHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHH
T ss_pred CcccccccccccccCCCCCcCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhcccccccHHHHHHHHHHHHHHHHH
Confidence 6 789999999999999999999999999999999999998 7 8999999999999865
No 29
>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1 PDB: 1fbv_C* 3sy2_C 3sqv_C
Probab=100.00 E-value=1.6e-46 Score=268.16 Aligned_cols=136 Identities=25% Similarity=0.576 Sum_probs=127.3
Q ss_pred CcccccCCCCCeEEee-CCCCceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccccCCcccCCCcEeeec
Q 032505 1 MSLMMSGGDLGVSAFP-EGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDI 79 (139)
Q Consensus 1 ~~l~~~~~~~gi~~~p-~~~~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~Hpni~~~G~icl~~ 79 (139)
++|++ ++++|+++.+ .++|+++|+++|. |++|||+||+|+++|.||++||++||+|+|.|++|||||+.+|.||+++
T Consensus 12 ~~l~~-~~~~~~~~~~~~~~~l~~w~~~i~-P~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~G~iCl~i 89 (154)
T 1c4z_D 12 EEIRK-CGMKNFRNIQVDEANLLTWQGLIV-PDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPV 89 (154)
T ss_dssp TTCSS-SCCSSCEEECSSCSSSSEEEEEEC-CCSSSCCSCCEEEEEECCTTTTTSCCEEEESSCCCCTTBCTTCBBCCTT
T ss_pred HHHHh-CCCCCEEEeeCCCCchheEEEEEe-CCCCCccCCeEEEEEEeCCCCCCCCCEEEEeCCCccccCCCCCEEECCC
Confidence 46777 8899998665 6789999999998 9999999999999999999999999999999999999999999999999
Q ss_pred CC-CcCCCcccHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhccC
Q 032505 80 LQ-DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEFE 138 (139)
Q Consensus 80 l~-~~W~p~~~i~~iL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~~r~~~~~~a~~ 138 (139)
|. ++|+|+++|.+||.+|+++|.+|++++|+|.+||++|++| ++|.++||+++++||++
T Consensus 90 L~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~~~~a~~ 150 (154)
T 1c4z_D 90 ISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKYGEK 150 (154)
T ss_dssp TSSSSCCTTCCHHHHHHHHHHHHHSCCCSSCSCHHHHHHHHTCSSTTHHHHHHHHTTC---
T ss_pred CCCCCCCCCCcHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHhHHHHHHHHHHHHHHhccc
Confidence 96 8999999999999999999999999999999999999999 99999999999999975
No 30
>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics consortium, SGC, ubiquitin- conjugating enzyme; 2.18A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=1.3e-46 Score=272.21 Aligned_cols=131 Identities=35% Similarity=0.689 Sum_probs=125.1
Q ss_pred cccccCCCCCeEEeeCCCCceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccccCCcc-cCCCcEeeecC
Q 032505 2 SLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNV-DQYGNICLDIL 80 (139)
Q Consensus 2 ~l~~~~~~~gi~~~p~~~~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~Hpni-~~~G~icl~~l 80 (139)
+|++ ++++||++.|.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+|||||| +.+|.||+++|
T Consensus 34 ~l~~-~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNI~~~~G~ICL~iL 112 (169)
T 1yrv_A 34 DLKE-NNYKGITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPFHPNVDPHTGQPCIDFL 112 (169)
T ss_dssp HHHH-HCCTTEEEEECSTTSCEEEEEEECCTTSTTTTCEEEEEEECCTTBTTBCCEEEESSCCCCTTBCTTTCCBCCHHH
T ss_pred HHHh-CCCCCEEEEEcCCccccceeEEECCCCCCccceEEEEEEECCccCCCCCCcceecCCCccCcccCCCCeEeehhh
Confidence 4566 889999999999999999999999999999999999999999999999999999999999999 78999999999
Q ss_pred C--CcCCCcccHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHh
Q 032505 81 Q--DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFA 134 (139)
Q Consensus 81 ~--~~W~p~~~i~~iL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~~r~~~~~ 134 (139)
. ++|+|+++|++||.+|+++|.+|++++|+|.+||++|++| ++|.++ |+++++
T Consensus 113 ~~~~~WsP~~ti~~vL~sI~sll~~Pn~~~Pln~eaa~l~~~d~~~y~~~-~~~v~~ 168 (169)
T 1yrv_A 113 DNPEKWNTNYTLSSILLALQVMLSNPVLENPVNLEAARILVKDESLYRTI-LRLFNR 168 (169)
T ss_dssp HCGGGCCTTCCHHHHHHHHHHHHTSCCTTSCSCHHHHHHHHSCHHHHHHH-HHHHC-
T ss_pred cCCcCCCCcCCHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHH-HHHhhC
Confidence 8 8999999999999999999999999999999999999999 999999 888764
No 31
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=100.00 E-value=2.5e-46 Score=285.28 Aligned_cols=131 Identities=34% Similarity=0.598 Sum_probs=127.9
Q ss_pred CCCCeEEeeCCCCceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccccCCcccC-CCcEeeecCCCcCCC
Q 032505 8 GDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQ-YGNICLDILQDKWSS 86 (139)
Q Consensus 8 ~~~gi~~~p~~~~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~Hpni~~-~G~icl~~l~~~W~p 86 (139)
++.||++.|.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||||+. +|.||+++|.++|+|
T Consensus 76 ~~~gi~v~p~~dnl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNV~~~~G~ICL~iL~~~WsP 155 (253)
T 3e46_A 76 SKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAA 155 (253)
T ss_dssp HTTSEEEEECSTTSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCTTTCBBCCGGGTTCCCT
T ss_pred CCCCEEEEECCCcccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeecCCCccCCccCCCCeeecccccCCCCC
Confidence 4789999999999999999999999999999999999999999999999999999999999995 999999999999999
Q ss_pred cccHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhccC
Q 032505 87 AYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEFE 138 (139)
Q Consensus 87 ~~~i~~iL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~~r~~~~~~a~~ 138 (139)
+++|.+||.+|+++|.+|++++|+|.+||++|++| ++|.++||+|+++||..
T Consensus 156 ~~ti~~vL~sI~~ll~~pnp~~Pln~eaa~l~~~d~~~f~~~ar~~t~~yA~~ 208 (253)
T 3e46_A 156 AMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAGA 208 (253)
T ss_dssp TCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHHCC
T ss_pred CCCHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHCHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999 99999999999999974
No 32
>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL structural genomics consortium, SGC, ligase; HET: PG4; 2.38A {Plasmodium falciparum}
Probab=100.00 E-value=2.4e-47 Score=271.89 Aligned_cols=129 Identities=33% Similarity=0.558 Sum_probs=125.0
Q ss_pred CCeEEeeCCCCceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccccCCcccC-CCcEeeecCCCcCCCcc
Q 032505 10 LGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQ-YGNICLDILQDKWSSAY 88 (139)
Q Consensus 10 ~gi~~~p~~~~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~Hpni~~-~G~icl~~l~~~W~p~~ 88 (139)
.|+++.+.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+. +|.||+++|.+.|+|++
T Consensus 17 ~~~~v~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni~~~~G~iCl~il~~~W~p~~ 96 (152)
T 2onu_A 17 AGYDLELNNGSTQDFDVMFHGPNGTAYEGGIWKVHVTLPDDYPFASPSIGFMNKLLHPNVDEASGSVCLDVINQTWTPLY 96 (152)
T ss_dssp HTCCEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBCTTTCBBCHHHHHHHCCTTC
T ss_pred CCCEEEEccCccceEEEEEECCCCCcccceEEEEEEcCcccCCCCCCeEEEecCCccCcCcCcCCeEecccccccCCCCC
Confidence 48889999999999999999999999999999999999999999999999999999999995 99999999999999999
Q ss_pred cHHHHHHH-HHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhccC
Q 032505 89 DCRTILLS-IQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEFE 138 (139)
Q Consensus 89 ~i~~iL~~-i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~~r~~~~~~a~~ 138 (139)
+|.+||.+ |++||.+|++++|+|.+||++|++| ++|.++||+++++||++
T Consensus 97 ~i~~vl~~ii~~Ll~~Pn~~~P~n~~aa~~~~~d~~~y~~~v~~~~~~~a~~ 148 (152)
T 2onu_A 97 SLVNVFEVFLPQLLTYPNPSDPLNSDAASLLMKDKNIYEEKVKEYVKLYASK 148 (152)
T ss_dssp CHHHHHHTHHHHHHHSCCCSSCSSHHHHHHHHHCHHHHHHHHHHHHHHHSCG
T ss_pred CHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhccC
Confidence 99999999 6899999999999999999999999 99999999999999975
No 33
>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation pathway, structural genomics, structural genomics consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1pzv_A
Probab=100.00 E-value=2e-46 Score=271.97 Aligned_cols=129 Identities=36% Similarity=0.661 Sum_probs=97.7
Q ss_pred cccccCCCCCeEEeeCC-CCceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccccCCcccCCCcEeeecC
Q 032505 2 SLMMSGGDLGVSAFPEG-ESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDIL 80 (139)
Q Consensus 2 ~l~~~~~~~gi~~~p~~-~~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~Hpni~~~G~icl~~l 80 (139)
+|++ ++++||++.|.+ +|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+.+|.||+++|
T Consensus 28 ~l~~-~~~~gi~~~p~~~~nl~~W~~~I~GP~~TpYegG~f~~~i~fp~~YP~~PP~v~F~T~i~HPNV~~~G~IClsiL 106 (172)
T 2awf_A 28 ELNK-NPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNGDVCISIL 106 (172)
T ss_dssp HHHH-SCCTTEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTTBCTTCBBCCGGG
T ss_pred HHHh-CCCCCEEEEECCCccccccEEEEeCCCCCCcCCcEEEEEEECCcccCCCCCcccccCCCccCCCCCCCcEehhhc
Confidence 4666 899999999975 79999999999999999999999999999999999999999999999999999999999999
Q ss_pred C-------------CcCCCcccHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-H-HHHHHHHHH
Q 032505 81 Q-------------DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-E-DYRKMVQKQ 131 (139)
Q Consensus 81 ~-------------~~W~p~~~i~~iL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~-~f~~~~r~~ 131 (139)
. +.|+|+++|++||.+|++||.+|++++|+|.+||++|++| + +|.++||+|
T Consensus 107 ~~~~~d~~~~~~~~~~WsP~~ti~~vL~sI~sll~~Pn~~~p~n~~aa~~~~~d~~~~f~~~vr~~ 172 (172)
T 2awf_A 107 HEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPANVDAAKEWREDRNGEFKRKVARC 172 (172)
T ss_dssp SCC---------CTTSCCTTCCHHHHHHHHHHHHSCC-----------------------------
T ss_pred CCcccccccccccCCCCCCcCcHHHHHHHHHHHHHCcCCCCccCHHHHHHHHHCcHHHHHHHHHhC
Confidence 6 6899999999999999999999999999999999999999 9 999999975
No 34
>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=1.2e-45 Score=265.14 Aligned_cols=129 Identities=32% Similarity=0.580 Sum_probs=124.3
Q ss_pred CCCCCeEEe-eCCCCceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccccCCcccCCCcEeeecCCCcCC
Q 032505 7 GGDLGVSAF-PEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWS 85 (139)
Q Consensus 7 ~~~~gi~~~-p~~~~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~Hpni~~~G~icl~~l~~~W~ 85 (139)
++++|+++. |+++|+++|+++| ||++|||+||+|+++|.||++||++||+|+|.|++|||||+.+|.||+++|.++|+
T Consensus 19 ~~~~~~~~~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~G~iCl~iL~~~W~ 97 (160)
T 1y8x_A 19 NLPKTCDISFSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILREDWK 97 (160)
T ss_dssp CCCTTEEEECSSTTCTTEEEEEE-CCSSSTTTTBCEEEEEECCTTTTTSCCEEEECSCCCBTTBCTTCBBCCGGGTTTCC
T ss_pred CCCCCeEEEeccCCccceEEEEE-CCCCCCCCCCEEEEEEeCCCcCCCCCCEEEEecCCccCcCCCCCeEEcccchhhcc
Confidence 567899998 7899999999988 99999999999999999999999999999999999999999999999999999999
Q ss_pred CcccHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhc
Q 032505 86 SAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGE 136 (139)
Q Consensus 86 p~~~i~~iL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~~r~~~~~~a 136 (139)
|+++|.+||.+|+++|.+|++++|+|.+||.+|++| ++|.++||++++...
T Consensus 98 p~~~i~~vL~~i~~ll~~Pn~~~p~n~~aa~~~~~~~~~f~~~v~~~v~~~~ 149 (160)
T 1y8x_A 98 PVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRGGY 149 (160)
T ss_dssp TTCCHHHHHHHHHHHHHSCCCSSCSCHHHHHHHHSCHHHHHHHHHHHHHSEE
T ss_pred CCCCHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHhhCc
Confidence 999999999999999999999999999999999999 999999999998643
No 35
>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=2.9e-45 Score=267.52 Aligned_cols=129 Identities=31% Similarity=0.552 Sum_probs=124.5
Q ss_pred CCCCCeEEe-eCCCCceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccccCCcccCCCcEeeecCCCcCC
Q 032505 7 GGDLGVSAF-PEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWS 85 (139)
Q Consensus 7 ~~~~gi~~~-p~~~~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~Hpni~~~G~icl~~l~~~W~ 85 (139)
++++|+++. |+++|+++|+++| ||++|||+||+|+++|.||++||++||+|+|.|++|||||+.+|.||+++|.++|+
T Consensus 39 ~~~~~i~~~~p~~~nl~~W~~~i-gP~~tpYegg~f~~~i~fp~~YP~~PP~v~F~t~i~HPNV~~~G~iCl~iL~~~W~ 117 (180)
T 2nvu_C 39 NLPKTCDISFSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVALNILREDWK 117 (180)
T ss_dssp CCCTTEEEECSSTTCTTEEEEEE-CCCSGGGTTBCEEEEEECCTTTTTSCCEEEECSCCCBTTBCTTSBBCCGGGTTSCC
T ss_pred CCCCCeEEEecccccccceEEEE-CCCCCCCCCCEEEEEEeCCCcCCCCCCcCceeccCccCCCCCCCcEEcccccccCC
Confidence 577899998 8899999999998 99999999999999999999999999999999999999999999999999999999
Q ss_pred CcccHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhc
Q 032505 86 SAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGE 136 (139)
Q Consensus 86 p~~~i~~iL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~~r~~~~~~a 136 (139)
|+++|.+||.+|+++|.+|++++|+|.+||.+|++| ++|.++||++++...
T Consensus 118 p~~~i~~vL~si~~ll~~Pn~~~p~n~~aa~~~~~d~~~f~~~v~~~v~~~~ 169 (180)
T 2nvu_C 118 PVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRGGY 169 (180)
T ss_dssp TTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHSEE
T ss_pred CCCCHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHhhCC
Confidence 999999999999999999999999999999999999 999999999998653
No 36
>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural genomics, structural genomics consortium; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.4e-46 Score=274.02 Aligned_cols=128 Identities=33% Similarity=0.615 Sum_probs=124.1
Q ss_pred CCeEEeeCCCCceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccccCCcccC-CCcEeeecCCCcCCCcc
Q 032505 10 LGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQ-YGNICLDILQDKWSSAY 88 (139)
Q Consensus 10 ~gi~~~p~~~~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~Hpni~~-~G~icl~~l~~~W~p~~ 88 (139)
+|+++.+. +|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||||+. +|.||+++|.++|+|++
T Consensus 40 ~g~~v~~~-ddl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~V~F~t~i~HPNV~~~~G~ICL~iL~~~WsP~~ 118 (179)
T 2z5d_A 40 SKHEVTIL-GGLNEFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDEASGTVCLDVINQTWTALY 118 (179)
T ss_dssp SSSCEEEE-EETTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBCTTTCBBCHHHHHHHCCTTC
T ss_pred CCCEEEEC-CCCceeEEEEECCCCCCccCCEEEEEeeCCCCCCCCCceEEEecCCccCcCCCCCCeEeccccccCCCCCC
Confidence 58888887 67999999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred cHHHHHHH-HHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhccC
Q 032505 89 DCRTILLS-IQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEFE 138 (139)
Q Consensus 89 ~i~~iL~~-i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~~r~~~~~~a~~ 138 (139)
+|++||.+ |++||.+|++++|+|.+||++|++| ++|.++||+|+++||++
T Consensus 119 ti~~iL~s~I~~Ll~~Pn~~~p~n~eaa~~~~~d~~~y~~~vr~~~~~~a~~ 170 (179)
T 2z5d_A 119 DLTNIFESFLPQLLAYPNPIDPLNGDAAAMYLHRPEEYKQKIKEYIQKYATE 170 (179)
T ss_dssp CTTHHHHTHHHHHHHSCCCSSCSCHHHHHHHHHCHHHHHHHHHHHHHHHSSH
T ss_pred CHHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHHccc
Confidence 99999999 9999999999999999999999999 99999999999999974
No 37
>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein complex, ubiquitin conjugating ENZY complex, peroxisomal protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A 2y9o_A
Probab=100.00 E-value=1.4e-44 Score=262.35 Aligned_cols=127 Identities=28% Similarity=0.535 Sum_probs=122.6
Q ss_pred CeEEee-CCCCceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEec-cccCCccc-CCCcEeeecCC-CcCCC
Q 032505 11 GVSAFP-EGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFET-MCFHPNVD-QYGNICLDILQ-DKWSS 86 (139)
Q Consensus 11 gi~~~p-~~~~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t-~i~Hpni~-~~G~icl~~l~-~~W~p 86 (139)
|+++.| +++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.| +||||||+ .+|.||+++|. ++|+|
T Consensus 36 ~~~~~p~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~~i~HPni~~~~G~iCl~iL~~~~W~p 115 (172)
T 2y9m_A 36 IESLNPIDETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSATGEICLNILKPEEWTP 115 (172)
T ss_dssp EEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECTTSCCCTTEETTTTEECCGGGSTTTCCT
T ss_pred eEEEecCCCCchhEEEEEEECCCCCcccCCEEEEEEECCCcCCCCCCEEEEeeCCeecCCCcCCCCEEeccccCCCCCCC
Confidence 577888 7889999999999999999999999999999999999999999999 99999996 79999999998 89999
Q ss_pred cccHHHHHHHHHHhhCCCCCCCcccHHHHHHhhc-h-HHHHHHHHHHHHhhcc
Q 032505 87 AYDCRTILLSIQSLLGEPNPESPLNSYAAALLNN-K-EDYRKMVQKQYFAGEF 137 (139)
Q Consensus 87 ~~~i~~iL~~i~~ll~~p~~~~p~N~~a~~~~~~-~-~~f~~~~r~~~~~~a~ 137 (139)
+++|.+||.+|+++|.+|++++|+|.+||++|++ | ++|.++||+|++++++
T Consensus 116 ~~~i~~vL~si~~ll~~p~~~~p~n~~aa~~~~~~d~~~f~~~~~~~~~~~~~ 168 (172)
T 2y9m_A 116 VWDLLHCVHAVWRLLREPVCDSPLDVDIGNIIRCGDMSAYQGIVKYFLAERER 168 (172)
T ss_dssp TCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHTTTCHHHHHHHHHHHHHHHHC
T ss_pred cCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999 9 9999999999999875
No 38
>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A
Probab=100.00 E-value=6.2e-45 Score=293.56 Aligned_cols=136 Identities=38% Similarity=0.691 Sum_probs=132.7
Q ss_pred cccccCCCCCeEEeeCCCCceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccccCCcccCCCcEeeecCC
Q 032505 2 SLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQ 81 (139)
Q Consensus 2 ~l~~~~~~~gi~~~p~~~~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~Hpni~~~G~icl~~l~ 81 (139)
+|++ ++++|+++.|.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+.+|.||+++|.
T Consensus 14 ~l~~-~~~~~~~~~p~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~~G~iCl~il~ 92 (399)
T 4ddg_A 14 DLAR-DPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSISLDILR 92 (399)
T ss_dssp HHHH-SCCSSEEEEEETTEEEEEEEEEECCTTSSSTTCEEEEEEECCSSTTTSCCEEEESSCCCCTTBCTTCBBCCGGGT
T ss_pred HHHh-CCCCCEEEEEcCCcceEEEEEEECCCCCCCCCCEEEEEEECCcccCCCCcEEEeeccccccccCCCCeEeCcccc
Confidence 4667 899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCCCcccHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhccC
Q 032505 82 DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEFE 138 (139)
Q Consensus 82 ~~W~p~~~i~~iL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~~r~~~~~~a~~ 138 (139)
++|+|++||.+||.+|+++|.+||+++|+|.+||++|++| ++|.++||+|+++||..
T Consensus 93 ~~W~p~~~i~~vL~~i~~ll~~pnp~~p~n~~aa~~~~~d~~~y~~~~~~~~~~~a~~ 150 (399)
T 4ddg_A 93 SQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYAMG 150 (399)
T ss_dssp TSCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHHHTSC
T ss_pred cCCCccccHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHCHHHHHHHHHHHHHHhhcc
Confidence 9999999999999999999999999999999999999999 99999999999999975
No 39
>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI, protein structure initiative ubiquitin conjugating enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1
Probab=100.00 E-value=5.1e-45 Score=264.27 Aligned_cols=131 Identities=31% Similarity=0.582 Sum_probs=122.5
Q ss_pred ccccCCCCCeEEeeCCCCceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccccCCcccC-CCcEeeecCC
Q 032505 3 LMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQ-YGNICLDILQ 81 (139)
Q Consensus 3 l~~~~~~~gi~~~p~~~~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~Hpni~~-~G~icl~~l~ 81 (139)
|++ ++ .++ +.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||||+. +|.||+++|.
T Consensus 24 l~~-~~-~~v---~~~~~l~~w~~~I~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~F~t~i~HPNi~~~~G~iCl~iL~ 98 (171)
T 1yf9_A 24 LCN-ST-RKV---YPSDTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNVDERSGSVCLDVIN 98 (171)
T ss_dssp HHS-SS-SCE---EECSSTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBCTTTCBBCHHHHH
T ss_pred HHh-CC-CCC---CCCCCceEEEEEEECCCCCCccCceEEEEEEcCCCCCCCCCeEEeecCcccccCcccCCeEeccccc
Confidence 445 55 344 35789999999999999999999999999999999999999999999999999995 9999999999
Q ss_pred CcCCCcccHHHHHHHH-HHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhccC
Q 032505 82 DKWSSAYDCRTILLSI-QSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEFE 138 (139)
Q Consensus 82 ~~W~p~~~i~~iL~~i-~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~~r~~~~~~a~~ 138 (139)
++|+|+++|++||.+| ++||.+|++++|+|.+||++|++| ++|.++||+++++||++
T Consensus 99 ~~W~p~~~i~~vL~sil~~ll~~Pn~~~p~n~~aa~~~~~d~~~y~~~vr~~~~~~a~~ 157 (171)
T 1yf9_A 99 QTWTPMYQLENIFDVFLPQLLRYPNPSDPLNVQAAHLLHADRVGFDALLREHVSTHATP 157 (171)
T ss_dssp HHCCTTCCTHHHHHTHHHHHHHSCCSSCCSCHHHHHHHHHCHHHHHHHHHHHHHHHCCH
T ss_pred cCCCCCCcHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHHcCh
Confidence 9999999999999997 799999999999999999999999 99999999999999974
No 40
>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A {Saccharomyces cerevisiae} PDB: 3tdi_C
Probab=100.00 E-value=9.9e-44 Score=261.35 Aligned_cols=129 Identities=32% Similarity=0.514 Sum_probs=124.2
Q ss_pred CCCCeEEe----eCCCCce---EEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccccCCcccCCCcEeeecC
Q 032505 8 GDLGVSAF----PEGESIF---TWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDIL 80 (139)
Q Consensus 8 ~~~gi~~~----p~~~~~~---~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~Hpni~~~G~icl~~l 80 (139)
+++|+++. |+++|++ +|+++|. |++|||+||+|+++|.||++||++||+|+|.|++|||||+.+|.||+++|
T Consensus 43 ~~~~i~~~~~~~p~~~nl~~~~~w~~~I~-p~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnV~~~G~iCl~iL 121 (190)
T 3o2u_A 43 LPPTVTLNVITSPDSADRSQSPKLEVIVR-PDEGYYNYGSINFNLDFNEVYPIEPPKVVCLKKIFHPNIDLKGNVCLNIL 121 (190)
T ss_dssp CCTTEEEEEEECTTCCCTTSCCEEEEEEC-CSSSTTTTCCEEEEEECCTTTTTSCCEEEECSCCCCTTBCTTSBBCCGGG
T ss_pred CCCCEEEEecCCCCCccCCcCCeEEEEEc-CCCCCCCCCEEEEEEECCCCCCCCCceeEEecCcccCCCCCCCeEechhc
Confidence 67899998 8899999 9999997 88899999999999999999999999999999999999999999999999
Q ss_pred CCcCCCcccHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhcc
Q 032505 81 QDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEF 137 (139)
Q Consensus 81 ~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~~r~~~~~~a~ 137 (139)
.++|+|+++|++||.+|+++|.+||+++|+|.+||++|++| ++|.++||+|++.+..
T Consensus 122 ~~~W~p~~~i~~vL~~i~~ll~~pn~~~pln~~aa~~~~~d~~~f~~~ar~~~~~~~~ 179 (190)
T 3o2u_A 122 REDWSPALDLQSIITGLLFLFLEPNPNDPLNKDAAKLLCEGEKEFAEAVRLTMSGGSI 179 (190)
T ss_dssp TTTCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHTCHHHHHHHHHHHHBTCEE
T ss_pred cCCCCCCCCHHHHHHHHHHHHhCCCCCcchhHHHHHHHHHCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999 9999999999987654
No 41
>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics, PSI, protein structure initiative; 2.63A {Trypanosoma cruzi}
Probab=100.00 E-value=3.3e-42 Score=248.73 Aligned_cols=121 Identities=25% Similarity=0.529 Sum_probs=115.6
Q ss_pred CCCeEEeeCCCCceEEEEEEecCCCCCCC--CcEEEEEEEcCCCCCCCCCeeEEeccccCCcccCCCcEeeecCCCcCCC
Q 032505 9 DLGVSAFPEGESIFTWIGTIEGGKGTMYE--GLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSS 86 (139)
Q Consensus 9 ~~gi~~~p~~~~~~~w~~~i~Gp~~t~ye--gg~f~~~i~f~~~YP~~pP~v~f~t~i~Hpni~~~G~icl~~l~~~W~p 86 (139)
+.|+++.+.++|+++|+++|.||++|||+ ||.|+++|.||++||++||+|+|.|++|||||+.+|.||+++|.++|+|
T Consensus 37 ~~~i~~~~~~~nl~~w~~~i~Gp~~tpye~~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~~G~iCl~il~~~W~p 116 (167)
T 4ds2_A 37 HSTAIFSVDTDTIYNWILKVKAPADSVYGGAGNTYQLSVLFSDDYPHEPPTVRFVTPVYSPLVTGEGGICDRMVNDFWTP 116 (167)
T ss_dssp SSCEEEEEEESSTTEEEEEEECCTTSGGGTTCCEEEEEEECCTTTTTSCCEEEESSCCCCSSCCTTSCCCTHHHHTTCCT
T ss_pred CCcEEEEeCCCcccEEEEEEECCCCCCccCCCCEEEEEEECCCCCCCCCCEEEEeCCcccccCCCCCEEEcccCcCCCCC
Confidence 78999999999999999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHH-HHHHHhhCC--CCCCCcccHHHHHHhhch-HHHHHHHH
Q 032505 87 AYDCRTIL-LSIQSLLGE--PNPESPLNSYAAALLNNK-EDYRKMVQ 129 (139)
Q Consensus 87 ~~~i~~iL-~~i~~ll~~--p~~~~p~N~~a~~~~~~~-~~f~~~~r 129 (139)
+++++++| ..|++|+.+ |++++|+|.+||++|++| ++|.++||
T Consensus 117 ~~~i~~vll~~l~~l~~~~~pn~~~p~n~eaa~l~~~d~~~f~~~vr 163 (167)
T 4ds2_A 117 DQHASDVIKLVLDRVFSQYKSRRDDDVNPEARHYLEKFPQDFAARVR 163 (167)
T ss_dssp TSCHHHHHHHHHHHHHTSTTSCCSCCCCHHHHHHHHHCHHHHHHHHT
T ss_pred CCChHHHHHHHHHHHHhcCCCCCcchHhHHHHHHHHHCHHHHHHHHh
Confidence 99999965 567888874 899999999999999999 99999998
No 42
>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G structural genomics consortium, SGC, ligase; 2.40A {Plasmodium falciparum} PDB: 3e95_C
Probab=100.00 E-value=4e-41 Score=240.59 Aligned_cols=118 Identities=30% Similarity=0.443 Sum_probs=107.8
Q ss_pred cccccC-CCCCeEEeeCC-C--CceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccccCCcccCCCcE--
Q 032505 2 SLMMSG-GDLGVSAFPEG-E--SIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNI-- 75 (139)
Q Consensus 2 ~l~~~~-~~~gi~~~p~~-~--~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~Hpni~~~G~i-- 75 (139)
+|++ + +++||++.+.. + |+++|+++|.||++||||||+|+++|.||++||++||+|+|.|+||||||+.+|.|
T Consensus 32 ~l~~-~~~~~~i~~~~~~~~d~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~t~i~HPNV~~~G~ici 110 (156)
T 2q0v_A 32 RGQK-GNVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDTKIEMSCVDNCGRVIK 110 (156)
T ss_dssp HHHC-C-CCTTEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBCCCCTTBCTTSBBCG
T ss_pred HHHh-CCCCCCeEEEECCCccccceeeEEEEECCCCCCcCCcEEEEEEECCCcCCCCCCeEEEEcccccCCCccCCeEeh
Confidence 3555 6 78899999853 3 59999999999999999999999999999999999999999999999999999999
Q ss_pred -eeecCCCcCCCcccHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch
Q 032505 76 -CLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK 121 (139)
Q Consensus 76 -cl~~l~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~N~~a~~~~~~~ 121 (139)
|+++|+ +|+|+++|++||.+|+++|.+|++++|+|.+||.+|++|
T Consensus 111 sCL~iL~-~WsP~~ti~~vL~sI~~ll~~Pn~~~p~n~~aa~~y~~n 156 (156)
T 2q0v_A 111 NNLHILK-NWNRNYTIETILISLRQEMLSSANKRLPQPNEGEVYSNN 156 (156)
T ss_dssp GGSHHHH-TCCTTCCHHHHHHHHHHHTTSTTTTTCCCCCTTCBC---
T ss_pred hhccccc-CCCCcCcHHHHHHHHHHHHhCCCCCCcCChHHHHHhhhC
Confidence 899986 599999999999999999999999999999999999875
No 43
>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase, protease inhibitor, thiol protease inhibitor, UBL conjugation pathway; HET: MSE; 2.01A {Homo sapiens}
Probab=100.00 E-value=2e-40 Score=259.52 Aligned_cols=135 Identities=27% Similarity=0.411 Sum_probs=124.4
Q ss_pred ccccCCCC----CeEEeeCCCCceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecc-----ccCCcccCCC
Q 032505 3 LMMSGGDL----GVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETM-----CFHPNVDQYG 73 (139)
Q Consensus 3 l~~~~~~~----gi~~~p~~~~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~-----i~Hpni~~~G 73 (139)
|++ ++++ ++.+.+.++|++.|+++|.||++|||+||+|+|+|.||++||++||+|+|.|+ +|||||+.+|
T Consensus 88 L~k-~~p~g~~~~i~v~~~ednl~~w~~~I~GP~~TpYegG~F~l~I~fP~dYP~~PP~V~F~T~~g~~~ifHPNV~~~G 166 (323)
T 3ceg_A 88 LST-SLPLSSSSSVFVRCDEERLDIMKVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETTGGHSVRFNPNLYNDG 166 (323)
T ss_dssp HHH-HCCCCSSCCEEEEEESSCTTEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEECCSTTTTCCCBTTBCTTC
T ss_pred HHh-CCCCCcccceeecccCCCccccEEEEeCCCCCCcCCCEEEEEEeCCCCCCCCCCeEEEeccCCCcccccCCCCcCC
Confidence 445 6665 45677889999999999999999999999999999999999999999999998 9999999999
Q ss_pred cEeeecCC-------CcCCCcc-cHHHHHHHHHHhhC--CCCCCCcccHHH--HHHhhch-HHHHHHHHHHHHhhccC
Q 032505 74 NICLDILQ-------DKWSSAY-DCRTILLSIQSLLG--EPNPESPLNSYA--AALLNNK-EDYRKMVQKQYFAGEFE 138 (139)
Q Consensus 74 ~icl~~l~-------~~W~p~~-~i~~iL~~i~~ll~--~p~~~~p~N~~a--~~~~~~~-~~f~~~~r~~~~~~a~~ 138 (139)
.||+++|. +.|+|++ +|.+||.+|++||. +|++++|+|.++ +.++.+| ++|.++||+++++||+.
T Consensus 167 ~ICLsiL~~~~g~~~e~WsPa~stI~~VLlsIqsLL~~~~Pn~~dP~~~~a~a~~~~~~d~~~Y~~~vr~~t~k~A~~ 244 (323)
T 3ceg_A 167 KVCLSILNTWHGRPEEKWNPQTSSFLQVLVSVQSLILVAEPYFNEPGYERSRGTPSGTQSSREYDGNIRQATVKWAML 244 (323)
T ss_dssp BBCCGGGTSSCCCGGGSCCTTTCCHHHHHHHHHHHTSCSSGGGGSTTGGGGTTSHHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred eEechhhccccCCCcCCCCcCcCCHHHHHHHHHHHHcCCCCCCCCccCHHHHHhhhhhhhHHHHHHHHHHHHHHHhhH
Confidence 99999997 6899999 89999999999996 788899999986 6789999 99999999999999973
No 44
>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics, structural genomics consortium, unknown function; 1.86A {Plasmodium vivax} SCOP: d.20.1.1
Probab=100.00 E-value=6.6e-40 Score=226.61 Aligned_cols=106 Identities=30% Similarity=0.514 Sum_probs=96.8
Q ss_pred cccccCCCCCeEEeeCCCCceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccc-cCCcccCCCcEeeecC
Q 032505 2 SLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMC-FHPNVDQYGNICLDIL 80 (139)
Q Consensus 2 ~l~~~~~~~gi~~~p~~~~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i-~Hpni~~~G~icl~~l 80 (139)
+|++ ++++|+++.+.++|+++|+++|.||++||||||.|+++|.||++||++||+|+|.|++ |||||+.+|.||+++|
T Consensus 17 ~l~~-~~~~~~~~~~~~~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~~HPnv~~~G~iCl~iL 95 (125)
T 2fo3_A 17 NFLN-NPPINCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQKPPKHTHVYSNGDICLSLL 95 (125)
T ss_dssp HHHH-SCCTTEEEEECTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSCCCBTTBCTTSBBCCGGG
T ss_pred HHHh-CCCCCEEEEeCcchhhhhheEEeCCCCCCcCCCEEEEEEEcCCCCCCCCCEEEEeCCCCCCCcCCCCCEEEchhc
Confidence 4566 8899999999999999999999999999999999999999999999999999999996 9999999999999999
Q ss_pred CCcCCCcccHHHHHHHHHHhhCCCCCCC
Q 032505 81 QDKWSSAYDCRTILLSIQSLLGEPNPES 108 (139)
Q Consensus 81 ~~~W~p~~~i~~iL~~i~~ll~~p~~~~ 108 (139)
.++|+|++++++||.+|+++|.+|+...
T Consensus 96 ~~~W~P~~~i~~vl~si~~ll~~p~~~~ 123 (125)
T 2fo3_A 96 GDDYNPSLSISGLVLSIISMLSSAKEKK 123 (125)
T ss_dssp TTTCCTTCCHHHHHHHHHHHHC------
T ss_pred CCCCCCCCcHHHHHHHHHHHHhCccccc
Confidence 9999999999999999999999998754
No 45
>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown function, structural genomics consortium, SGC; 2.80A {Plasmodium falciparum 3D7}
Probab=100.00 E-value=4.5e-39 Score=225.37 Aligned_cols=104 Identities=29% Similarity=0.513 Sum_probs=99.8
Q ss_pred cccccCCCCCeEEeeCCCCceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccc-cCCcccCCCcEeeecC
Q 032505 2 SLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMC-FHPNVDQYGNICLDIL 80 (139)
Q Consensus 2 ~l~~~~~~~gi~~~p~~~~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i-~Hpni~~~G~icl~~l 80 (139)
+|++ ++++|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++ |||||+.+|.||+++|
T Consensus 31 ~l~~-~~~~~~~~~~~~~nl~~W~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~~HPnv~~~G~ICl~iL 109 (136)
T 2h2y_A 31 NFLK-NPPINCTIDVHPSNIRIWIVQYVGLENTIYANEVYKIKIIFPDNYPLKPPIVYFLQKPPKHTHVYSNGDICLSVL 109 (136)
T ss_dssp HHHH-SCCTTEEEEECTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSCCCCTTBCTTCCBCCGGG
T ss_pred HHHh-CCCCCeEEEeccccccccEEEEECCCCCceeCCEEEEEEEeCCCCCCCCCEEEEeCCCCCCCcCCCCCEEECccc
Confidence 4566 8899999999999999999999999999999999999999999999999999999996 9999999999999999
Q ss_pred CCcCCCcccHHHHHHHHHHhhCCCCC
Q 032505 81 QDKWSSAYDCRTILLSIQSLLGEPNP 106 (139)
Q Consensus 81 ~~~W~p~~~i~~iL~~i~~ll~~p~~ 106 (139)
.++|+|+++|++||.+|++||.+|+.
T Consensus 110 ~~~WsP~~ti~~vL~si~sll~~p~~ 135 (136)
T 2h2y_A 110 GDDYNPSLSISGLILSIISMLSSAKE 135 (136)
T ss_dssp TTTCCTTCCHHHHHHHHHHHHSSSCC
T ss_pred cCCCCCCCcHHHHHHHHHHHHhCcCc
Confidence 99999999999999999999999874
No 46
>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing, nuclear protein, UBL conjugation pathway,ubiquitin, ligase, structural genomics; 1.69A {Homo sapiens} SCOP: d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A
Probab=100.00 E-value=2e-39 Score=232.48 Aligned_cols=113 Identities=27% Similarity=0.397 Sum_probs=104.5
Q ss_pred cccccCCCCC-eEEee-CCCC--ceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccccCCccc-CCCcEe
Q 032505 2 SLMMSGGDLG-VSAFP-EGES--IFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVD-QYGNIC 76 (139)
Q Consensus 2 ~l~~~~~~~g-i~~~p-~~~~--~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~Hpni~-~~G~ic 76 (139)
+|++ ++++| +++.+ +++| +++|+++|.||++||||||+|+++|.||++||++||+|+|.|++|||||+ .+|.||
T Consensus 36 ~l~~-~~~~g~~~~~~~~~~d~~l~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~HPNV~~~~G~IC 114 (160)
T 2a4d_A 36 EGQK-GVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGVVD 114 (160)
T ss_dssp HHHS-CCTTSSEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBCCCCTTBCTTTCBBC
T ss_pred HHHh-CCCCCcEEEEecCCccccceeeEEEEECCCCCCccCeEEEEEEECCCcCCCCCcEEEEecCceeCCEECCCCEEe
Confidence 4556 78888 78887 4454 99999999999999999999999999999999999999999999999999 599999
Q ss_pred eecCC--CcCCCcccHHHHHHHHHHhhC-CCCCCCcccHHHH
Q 032505 77 LDILQ--DKWSSAYDCRTILLSIQSLLG-EPNPESPLNSYAA 115 (139)
Q Consensus 77 l~~l~--~~W~p~~~i~~iL~~i~~ll~-~p~~~~p~N~~a~ 115 (139)
+++|. ++|+|+++|++||.+|+++|. +||.++|+|.|||
T Consensus 115 l~iL~~~~~WsP~~ti~~vL~sI~~ll~~~pn~~~P~n~eaa 156 (160)
T 2a4d_A 115 PRAISVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEGQ 156 (160)
T ss_dssp GGGSHHHHTCCTTCCHHHHHHHHHHHHTSTTTTTCCCCCTTC
T ss_pred hhhcCCccCCCccCcHHHHHHHHHHHHccCCCCCCCCChhhc
Confidence 99998 899999999999999999996 7999999999987
No 47
>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B
Probab=100.00 E-value=3.2e-40 Score=231.69 Aligned_cols=115 Identities=25% Similarity=0.393 Sum_probs=103.8
Q ss_pred cccccC-CCCCeEEeeCC-C--CceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccccCCcccCC-CcE-
Q 032505 2 SLMMSG-GDLGVSAFPEG-E--SIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQY-GNI- 75 (139)
Q Consensus 2 ~l~~~~-~~~gi~~~p~~-~--~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~Hpni~~~-G~i- 75 (139)
+|++ + +++|+++.+.+ + |+++|+++|.||++||||||+|+++|.||++||++||+|+|.|++|||||+.+ |.|
T Consensus 17 ~l~~-~~~~~~~~~~~~~~~d~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~~G~i~ 95 (138)
T 1jat_B 17 KGEK-GFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKINLPCVNPTTGEVQ 95 (138)
T ss_dssp HHHC-----CCEEEEESSTTCTTCCEEEEEEECCSSSTTTTCEEEEEEECCTTTTTSCCEEEESBCCCCTTBCTTTCBBC
T ss_pred HHHh-cCCCCCEEEEeCCCCCCcceEEEEEEECCCCCCccceEEEEEEECCCCCCCCCCceEEEcccccCCEeCCCCEEe
Confidence 3555 6 78999999953 3 59999999999999999999999999999999999999999999999999996 999
Q ss_pred -eeecCCCcCCCcccHHHHHHHHHHhhCCCCCCCcccHHHHHHh
Q 032505 76 -CLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL 118 (139)
Q Consensus 76 -cl~~l~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~N~~a~~~~ 118 (139)
|+++++ +|+|+++|++||.+|+++|.+|++++|+|.+||.+|
T Consensus 96 ~cL~~l~-~W~p~~~i~~vl~~i~~ll~~pn~~~p~~~~~~~~y 138 (138)
T 1jat_B 96 TDFHTLR-DWKRAYTMETLLLDLRKEMATPANKKLRQPKEGETF 138 (138)
T ss_dssp TTSHHHH-TCCTTCCHHHHHHHHHHHHTSHHHHTSCCCCTTCBC
T ss_pred eecccCC-CCCCcCcHHHHHHHHHHHHcCCCCCCCCCcchhhcC
Confidence 899885 899999999999999999999999999999988655
No 48
>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating enzyme variant, UBC13, HUBC13, polyubiquitination, ligase, signaling protein; NMR {Homo sapiens}
Probab=100.00 E-value=6.2e-39 Score=232.04 Aligned_cols=113 Identities=27% Similarity=0.397 Sum_probs=104.1
Q ss_pred cccccCCCCC-eEEee-CCCC--ceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccccCCccc-CCCcEe
Q 032505 2 SLMMSGGDLG-VSAFP-EGES--IFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVD-QYGNIC 76 (139)
Q Consensus 2 ~l~~~~~~~g-i~~~p-~~~~--~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~Hpni~-~~G~ic 76 (139)
+|++ ++++| +++.+ +++| +++|+++|.||++||||||+|+++|.||++||++||+|+|.|+||||||+ .+|.||
T Consensus 46 ~l~~-~~~~g~~~~~~~~~~d~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~HPNV~~~~G~IC 124 (170)
T 2hlw_A 46 EGQK-GVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGVVD 124 (170)
T ss_dssp HHHH-CCGGGCEEEEESSTTCSSCCBEEEEECCCSSSTTSSCCBCEEEECCSSCTTSCCEEEECBCCCCSSBCSSSCBBC
T ss_pred HHHh-CCCCCcEEEEecCcccccceeeEEEEeCCCCCCcCCcEEEEEEECCCCCCCCCCeeEEecccccCCEeCCCCEEE
Confidence 3556 77788 77887 4554 99999999999999999999999999999999999999999999999999 699999
Q ss_pred eecCC--CcCCCcccHHHHHHHHHHhhC-CCCCCCcccHHHH
Q 032505 77 LDILQ--DKWSSAYDCRTILLSIQSLLG-EPNPESPLNSYAA 115 (139)
Q Consensus 77 l~~l~--~~W~p~~~i~~iL~~i~~ll~-~p~~~~p~N~~a~ 115 (139)
+++|. ++|+|+++|++||.+|+++|. .||.++|+|.|||
T Consensus 125 l~iL~~~~~WsP~~ti~~vL~sI~~ll~~~pn~~~P~n~eaa 166 (170)
T 2hlw_A 125 PRAISVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEGQ 166 (170)
T ss_dssp TTTCHHHHTCCSSCCHHHHHHHHHHHHHSTTTSSSCCCSSCC
T ss_pred hhhcCCCCCCCccCcHHHHHHHHHHHHccCCCCCCCCCcccc
Confidence 99997 899999999999999999997 6999999999987
No 49
>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural genomics consortium, (SGC), ligase; 1.82A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=5.6e-38 Score=219.71 Aligned_cols=100 Identities=39% Similarity=0.706 Sum_probs=95.2
Q ss_pred cccccCCCCCeEEe--eCCCCceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecccc--CCcccCCCcEee
Q 032505 2 SLMMSGGDLGVSAF--PEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCF--HPNVDQYGNICL 77 (139)
Q Consensus 2 ~l~~~~~~~gi~~~--p~~~~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~--Hpni~~~G~icl 77 (139)
+|++ ++++||++. +.++|+++|+++|.||+|||||||.|+++|.||++||++||+|+|.|++| ||||+.+|.||+
T Consensus 33 ~l~~-~~~~gi~v~~~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~~~HPNV~~~G~ICL 111 (136)
T 2a7l_A 33 ALQN-DPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPHVYSNGHICL 111 (136)
T ss_dssp HHHH-SCCTTCCCCTTCCCCSCEEEEEEEECCTTSTTTTCEEEEEEEECTTTTTSCCEEEEESSCCCCBTTBCTTCBBCC
T ss_pred HHHh-CCCCCEEEEEeeCccccceeEEEEECCCCCccccEEEEEEEECCCCCCCCCCEEEEeCCCcCCCccCCCCCeEEc
Confidence 4566 899999965 88999999999999999999999999999999999999999999999999 999999999999
Q ss_pred ecCCCcCCCcccHHHHHHHHHHhhC
Q 032505 78 DILQDKWSSAYDCRTILLSIQSLLG 102 (139)
Q Consensus 78 ~~l~~~W~p~~~i~~iL~~i~~ll~ 102 (139)
++|.++|+|+++|++||.+|++||.
T Consensus 112 ~iL~~~WsP~~ti~~vL~sI~slL~ 136 (136)
T 2a7l_A 112 SILTEDWSPALSVQSVCLSIISMLS 136 (136)
T ss_dssp GGGTTTCCTTSCHHHHHHHHHHHTC
T ss_pred hhcCCCCCCCCcHHHHHHHHHHHhC
Confidence 9999999999999999999999984
No 50
>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase, UBL conjugation pathway, structural genomics consortium (SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=1e-35 Score=218.16 Aligned_cols=105 Identities=30% Similarity=0.484 Sum_probs=93.0
Q ss_pred cccccCCCCCeEEeeCCCCceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccccCCcccCCCcEeeecC-
Q 032505 2 SLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDIL- 80 (139)
Q Consensus 2 ~l~~~~~~~gi~~~p~~~~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~Hpni~~~G~icl~~l- 80 (139)
+|++ ++++||++.|.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+ ||||+.+|.||+++|
T Consensus 25 ~l~~-~~~~~i~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~v~f~T~--~~~~~~~G~ICL~iL~ 101 (187)
T 2f4w_A 25 RIKK-DPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITP--NGRFKCNTRLCLSITD 101 (187)
T ss_dssp HHHH-SCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSC--CSSBCTTSCBC-----
T ss_pred HHHh-CCCCCEEEEEcCCccceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcccccCC--CceeccCCeEeeeccc
Confidence 4566 899999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred --CCcCCCcccHHHHHHHHHHhhCCCCCCCc
Q 032505 81 --QDKWSSAYDCRTILLSIQSLLGEPNPESP 109 (139)
Q Consensus 81 --~~~W~p~~~i~~iL~~i~~ll~~p~~~~p 109 (139)
.+.|+|+++|.+||.+|+++|.+|+++..
T Consensus 102 ~~~~~W~P~~ti~~vL~si~sll~~p~p~~g 132 (187)
T 2f4w_A 102 FHPDTWNPAWSVSTILTGLLSFMVEKGPTLG 132 (187)
T ss_dssp -----CCTTCCHHHHHHHHHHHHHSCCCCTT
T ss_pred cCccCCCCcCcHHHHHHHHHHHhcCCCCCCc
Confidence 68999999999999999999999887643
No 51
>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating enzyme, structural genomics consortium ,SGC; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 2qgx_A
Probab=100.00 E-value=7.5e-37 Score=224.01 Aligned_cols=126 Identities=18% Similarity=0.330 Sum_probs=110.1
Q ss_pred cccccCC---CCCeEEeeCCCCceEEEEEEecC-CCCCCCC-----------cEEEEEEEcCCCCCCCCCeeEEeccccC
Q 032505 2 SLMMSGG---DLGVSAFPEGESIFTWIGTIEGG-KGTMYEG-----------LSYKLSLRFPLDYPFKPPQVKFETMCFH 66 (139)
Q Consensus 2 ~l~~~~~---~~gi~~~p~~~~~~~w~~~i~Gp-~~t~yeg-----------g~f~~~i~f~~~YP~~pP~v~f~t~i~H 66 (139)
+|++ ++ +.||++.|.++|+++|+++|.|| ++|||+| |.|+++|.||++||++||+|+|.|++||
T Consensus 38 ~l~~-~~~~~~~~~~~~p~~dnl~~W~~~I~Gp~~~tpy~ggl~~~~~~~g~g~f~l~i~fp~~YP~~PP~V~f~tpi~h 116 (186)
T 1zuo_A 38 DIYR-SQSYKTGIYSVELINDSLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKDNFPFDPPFVRVVLPVLS 116 (186)
T ss_dssp HHHT-SHHHHTTSEEEEEETTEEEEEEEEECCCCTTSHHHHHHHHHHHHHSCCSEEEEEECCTTTTSSCCEEEEEESCEE
T ss_pred HHHh-CCCCCCCcEEEEEcCCccceeEEEEECCCCCCCccccchhhccccCceEEEEEEECCCCCCCCCCeEEEeCCccC
Confidence 3455 66 68899999999999999999998 9999998 8999999999999999999999999999
Q ss_pred C-cccCCCcEeeecCC-CcCCCcccHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhc
Q 032505 67 P-NVDQYGNICLDILQ-DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGE 136 (139)
Q Consensus 67 p-ni~~~G~icl~~l~-~~W~p~~~i~~iL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~~r~~~~~~a 136 (139)
| ||+.+|.||+++|. ++|+|+++|++||++|+++|.+|+... .+.++ .+|.+++++++.+.+
T Consensus 117 PnnV~~~G~ICL~iL~~~~WsP~~ti~~VL~sI~slL~~p~a~~--------~~~~~~~~Y~~~~~~~~~~~~ 181 (186)
T 1zuo_A 117 GGYVLGGGALCMELLTKQGWSSAYSIESVIMQINATLVKGKARV--------QFGANKNQYNLARAQQSYNSI 181 (186)
T ss_dssp STTBCGGGBBCCGGGSTTTCCTTSCHHHHHHHHHHHHHHTTCEE--------CTTCCTTCCCHHHHHHHHHHH
T ss_pred CCccCCCCcEEeccCCCCCCCCcCcHHHHHHHHHHHHcCCChhH--------hhccCHHHHhHHHHHHHHHHH
Confidence 9 69999999999997 789999999999999999999885432 34555 777777777766543
No 52
>2z6o_A UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, polymorphism, UBL conjugation pathway, ligase; 1.60A {Homo sapiens} PDB: 2z6p_A 1ywz_A 2in1_A 2k07_A 3e2g_A 3evx_A
Probab=99.89 E-value=5.6e-25 Score=156.56 Aligned_cols=99 Identities=14% Similarity=0.272 Sum_probs=83.4
Q ss_pred EeeCCCCceEEEEEEecCCCCCCCCc----------EEEEEEEcCCCCCCCCCeeEEecc-ccCCcccCCCcEeeecC-C
Q 032505 14 AFPEGESIFTWIGTIEGGKGTMYEGL----------SYKLSLRFPLDYPFKPPQVKFETM-CFHPNVDQYGNICLDIL-Q 81 (139)
Q Consensus 14 ~~p~~~~~~~w~~~i~Gp~~t~yegg----------~f~~~i~f~~~YP~~pP~v~f~t~-i~Hpni~~~G~icl~~l-~ 81 (139)
+.+..+|+..|.+.+.||+||+|+|| .|+++|.||++||.+||+|+|.++ ++||||+.+|+||+|++ .
T Consensus 48 v~p~k~n~~~W~~ii~Gp~gT~WeGgcw~~~~~~~y~F~L~~~fPe~YP~~PPeV~F~~~~~~hpnmY~~G~ICLdIL~k 127 (172)
T 2z6o_A 48 VENNKNADNDWFRLESNKEGTRWFGKCWYIHDLLKYEFDIEFDIPITYPTTAPEIAVPELDGKTAKMYRGGKICLTDHFK 127 (172)
T ss_dssp HHHHHHTTCCCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCTTTTTSCCCCBCGGGTTTCSSBCTTSBBCCCTTHH
T ss_pred hccCccccceeEEeecCCCCCcccCcccccccccceEEEEEEECCCCCCCCCCeeeeCCCCCCCCCCCCCCcEechhhcc
Confidence 44556799999999999999999999 999999999999999999999998 99999999999999999 4
Q ss_pred C---cCCCcccHHHHHHHHHHhhCCCCCCCcccHHHHHHhhc
Q 032505 82 D---KWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNN 120 (139)
Q Consensus 82 ~---~W~p~~~i~~iL~~i~~ll~~p~~~~p~N~~a~~~~~~ 120 (139)
. .|+|.++|..+|.- .....+..|+..+...
T Consensus 128 p~Ws~~~P~~~IahiL~l--------gl~pwla~eip~lv~~ 161 (172)
T 2z6o_A 128 PLWARNVPKFGLAHLMAL--------GLGPWLAVEIPDLIQK 161 (172)
T ss_dssp HHHHHHTTSCCHHHHHHH--------THHHHHHHHHHHHHHH
T ss_pred ccccccCCccCHHHHHhh--------ccCchhhhhhHHHHHc
Confidence 3 45699999998843 2344455666655543
No 53
>3r3q_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomal sorting, ESCRT-I; 1.45A {Saccharomyces cerevisiae} SCOP: d.20.1.2 PDB: 3r42_A 1uzx_A*
Probab=99.83 E-value=1.3e-20 Score=134.64 Aligned_cols=95 Identities=26% Similarity=0.416 Sum_probs=82.9
Q ss_pred EEeeCCCCceEEEEEEecCCCCCCCCcE---EEEEEEcCCCCCCCCCeeEEec-------c---cc-CCcccCCCcEeee
Q 032505 13 SAFPEGESIFTWIGTIEGGKGTMYEGLS---YKLSLRFPLDYPFKPPQVKFET-------M---CF-HPNVDQYGNICLD 78 (139)
Q Consensus 13 ~~~p~~~~~~~w~~~i~Gp~~t~yegg~---f~~~i~f~~~YP~~pP~v~f~t-------~---i~-Hpni~~~G~icl~ 78 (139)
.+...+|...++-+.+.|.-.++|+|+. |.+.|.||++||++||.|.|.+ + |+ |||||.+|+||++
T Consensus 52 ~~yt~~dG~~~~Ll~l~Gtipv~y~g~~~Yn~pi~IwlP~~YP~~PP~v~v~p~t~~m~~~~~~I~~hpnVD~~G~I~lp 131 (162)
T 3r3q_A 52 RVFTHSDGTPQLLLSIYGTISTGEDGSSPHSIPVIMWVPSMYPVKPPFISINLENFDMNTISSSLPIQEYIDSNGWIALP 131 (162)
T ss_dssp EEEECTTSCEEEEEEEEEEEECSCCTTSCCEEEEEEECCTTTTTSCCEEEECGGGCCTTTSCTTSTHHHHBCTTSBBCCG
T ss_pred eeEEcCCCChheEEEEECccCccccCcccccccEEEEeCcccCCCCCEEEEECCCccccccccccCCCCCCCCCCcEeCc
Confidence 3445567777777888888789999999 8899999999999999998865 1 77 9999999999999
Q ss_pred cCCCcCCC-cccHHHHHHHHHHhhCCCCCCC
Q 032505 79 ILQDKWSS-AYDCRTILLSIQSLLGEPNPES 108 (139)
Q Consensus 79 ~l~~~W~p-~~~i~~iL~~i~~ll~~p~~~~ 108 (139)
+| .+|++ +.++.++|.+|+++|.+|+++.
T Consensus 132 yL-~~W~p~~s~L~~ll~~l~~lf~ep~~d~ 161 (162)
T 3r3q_A 132 IL-HAWDPAAMNLIMVVQELMSLLHEPPQDQ 161 (162)
T ss_dssp GG-GSCCGGGCCHHHHHHHHHHTTSCCCCCC
T ss_pred cc-ccCCCCcCcHHHHHHHHHHHhcCCCCCC
Confidence 99 56999 5799999999999999999875
No 54
>3kpa_A Probable ubiquitin fold modifier conjugating ENZY; UBL conjugation pathway, ligase, structural genomics, PSI; 2.20A {Leishmania major} SCOP: d.20.1.4
Probab=99.63 E-value=4e-17 Score=113.99 Aligned_cols=64 Identities=19% Similarity=0.505 Sum_probs=59.0
Q ss_pred eEEEEEEecCCCCCCCCc----------EEEEEEEcCCCCCCCCCeeEEecc-ccCCcccCCCcEeeecCCCcCCCcc
Q 032505 22 FTWIGTIEGGKGTMYEGL----------SYKLSLRFPLDYPFKPPQVKFETM-CFHPNVDQYGNICLDILQDKWSSAY 88 (139)
Q Consensus 22 ~~w~~~i~Gp~~t~yegg----------~f~~~i~f~~~YP~~pP~v~f~t~-i~Hpni~~~G~icl~~l~~~W~p~~ 88 (139)
..|...+.||.||+|+|+ .|++++.||.+||.+||+|+|.+. .+|||++.+|+||++++ |+|.+
T Consensus 58 ~dWf~~~sn~~GT~W~G~cw~~~~~~kyeFkLefdiP~tYP~tPPeI~Fp~ldgkt~kmYr~GkICLdIh---wkPlW 132 (168)
T 3kpa_A 58 SHWFHLESNPQGTRWYGTCWTYYKNEKYEFEMNFDIPVTYPQAPPEIALPELEGKTVKMYRGGKICMTTH---FFPLW 132 (168)
T ss_dssp CCCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCTTTTTSCCCCBCGGGTTTCSSEETTTEECCCTT---HHHHH
T ss_pred CCeeeecCCCCCCcccCccceeeccceeEEEEEEeCCccCCCCCCEeecccccCcCccccCCCcEEeccc---cchhh
Confidence 469999999999999999 999999999999999999999995 89999999999999986 66654
No 55
>3obq_A Tumor susceptibility gene 101 protein; protein transprot, ubiquitin binding, protein transport; 1.40A {Homo sapiens} SCOP: d.20.1.2 PDB: 3obs_A 3obu_A 3obx_A 3p9g_A* 3p9h_A* 2f0r_A 1kpp_A 1kpq_A 1m4p_A 1m4q_A 1s1q_A
Probab=99.61 E-value=1.3e-15 Score=107.08 Aligned_cols=79 Identities=27% Similarity=0.516 Sum_probs=70.5
Q ss_pred CCCceEEEEEEecCCCCCCCCcEEEE--EEEcCCCCCCCCCeeEEecc------ccCCcccCCCcEeeecCCCcCCC-cc
Q 032505 18 GESIFTWIGTIEGGKGTMYEGLSYKL--SLRFPLDYPFKPPQVKFETM------CFHPNVDQYGNICLDILQDKWSS-AY 88 (139)
Q Consensus 18 ~~~~~~w~~~i~Gp~~t~yegg~f~~--~i~f~~~YP~~pP~v~f~t~------i~Hpni~~~G~icl~~l~~~W~p-~~ 88 (139)
..++..|.++|. .+|+|+.|.+ .|.||++||++||.| |.++ ..|||||.+|+||+++|.+ |++ ..
T Consensus 50 ~~~LL~l~GtIp----v~y~g~~y~iPi~Iwlp~~YP~~pP~v-fv~pt~~m~I~~~~~Vd~~G~i~lpyL~~-W~~~~s 123 (146)
T 3obq_A 50 SRELMNLTGTIP----VPYRGNTYNIPICLWLLDTYPYNPPIC-FVKPTSSMTIKTGKHVDANGKIYLPYLHE-WKHPQS 123 (146)
T ss_dssp TCEEEEEEEEEE----EECSSCEEEEEEEEECCTTTTTSCCEE-EECCCTTEEECCBTTBCTTCBBCCHHHHT-CCTTTC
T ss_pred hheEEEEEEEee----eeecCccccceEEEEeCccCCCCCCEE-EEeCCCCCEECCCCCCCCCCCEecccccc-cCCCCC
Confidence 358899999997 6799999995 999999999999999 6655 5899999999999999955 987 78
Q ss_pred cHHHHHHHHHHhhC
Q 032505 89 DCRTILLSIQSLLG 102 (139)
Q Consensus 89 ~i~~iL~~i~~ll~ 102 (139)
++.+++..|+++|.
T Consensus 124 nL~~ll~~l~~~F~ 137 (146)
T 3obq_A 124 DLLGLIQVMIVVFG 137 (146)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999999997
No 56
>2ebm_A RWD domain-containing protein 1; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.89 E-value=0.052 Score=36.12 Aligned_cols=41 Identities=17% Similarity=0.256 Sum_probs=28.0
Q ss_pred eEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEec
Q 032505 22 FTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFET 62 (139)
Q Consensus 22 ~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t 62 (139)
..+.+.|..-.+..-+.-.+.+.+.||++||.+||.+...+
T Consensus 38 ~~~~i~i~~~~~~~~~~~~~~L~v~~p~~YP~~~P~i~l~~ 78 (128)
T 2ebm_A 38 PSFTITVTSEAGENDETVQTTLKFTYSEKYPDEAPLYEIFS 78 (128)
T ss_dssp CEEEECCBCCCCTTSCCCBEEEEEECCSSTTTSCCEEEEEE
T ss_pred CEEEEEEecCCCCCcCceeEEEEEEeCCCCCCCCceEEEEc
Confidence 45555555322222234478899999999999999987654
No 57
>2daw_A RWD domain containing protein 2; alpha+beta sandwich fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.20.1.3
Probab=94.40 E-value=0.25 Score=34.09 Aligned_cols=23 Identities=22% Similarity=0.404 Sum_probs=20.7
Q ss_pred EEEEEEEcCCCCCCCCCeeEEec
Q 032505 40 SYKLSLRFPLDYPFKPPQVKFET 62 (139)
Q Consensus 40 ~f~~~i~f~~~YP~~pP~v~f~t 62 (139)
.+.+.|.+|.+||..+|.+...+
T Consensus 76 ~i~L~v~lP~~YP~~~P~i~l~~ 98 (154)
T 2daw_A 76 KIDLQVTMPHSYPYLALQLFGRS 98 (154)
T ss_dssp EEEEEEEECSSTTSSCCEEEEEC
T ss_pred eEEEEEEcCCCCCCCCCcEEEEe
Confidence 79999999999999999997554
No 58
>2ebk_A RWD domain-containing protein 3; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.02 E-value=0.39 Score=31.80 Aligned_cols=40 Identities=15% Similarity=0.236 Sum_probs=27.8
Q ss_pred ceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEe
Q 032505 21 IFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFE 61 (139)
Q Consensus 21 ~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~ 61 (139)
...+.+.|..... .-..-.+.+.+.+|++||..+|.+...
T Consensus 39 ~~~f~i~l~~~~~-~~~~~~~~L~~~~p~~YP~~~P~i~l~ 78 (128)
T 2ebk_A 39 GTVFRIHTKAEGF-MDADIPLELVFHLPVNYPSCLPGISIN 78 (128)
T ss_dssp CEEEEEEEECCTT-TTCCCEEEEEEEECSSTTSSCCCCCCC
T ss_pred CCeEEEEecCCCC-CCCCeEEEEEEECCCCCCCCCCeEEEE
Confidence 4567777763321 111247899999999999999998644
No 59
>2day_A Ring finger protein 25; ligase, metal-binding, UB1 conjugation, UB1 conjugation pathway, RWD domain, alpha+beta sandwich fold, structural genomics; NMR {Homo sapiens} SCOP: d.20.1.3 PDB: 2dmf_A
Probab=93.86 E-value=0.24 Score=32.80 Aligned_cols=42 Identities=19% Similarity=0.381 Sum_probs=28.1
Q ss_pred ceEEEEEEecCCCCCCC--CcEEEEEEEcCCCCCCCCCeeEEec
Q 032505 21 IFTWIGTIEGGKGTMYE--GLSYKLSLRFPLDYPFKPPQVKFET 62 (139)
Q Consensus 21 ~~~w~~~i~Gp~~t~ye--gg~f~~~i~f~~~YP~~pP~v~f~t 62 (139)
...+.+.+..+.+..-+ .-.+.+.|.+|++||..+|.+...+
T Consensus 39 ~~~~~i~l~~~~~~~~~~~~~~~~L~~~~p~~YP~~~P~i~~~~ 82 (128)
T 2day_A 39 PWEIYITLHPATAEDQDSQYVCFTLVLQVPAEYPHEVPQISIRN 82 (128)
T ss_dssp CEEEEEEECCSCCSSSSCCCCEEEEEEEECSSTTSSCCEEEEEE
T ss_pred CeEEEEEEecCCCCCccccceeEEEEEEcCCCCCCCCCCeEEEc
Confidence 34555556532221111 2478899999999999999998775
No 60
>2yz0_A Serine/threonine-protein kinase GCN2; A-B-B-B-B-A-A, amino acid starvation signal response, EIF2alpha kinase, transferase; NMR {Saccharomyces cerevisiae}
Probab=93.80 E-value=0.21 Score=33.57 Aligned_cols=41 Identities=17% Similarity=0.275 Sum_probs=28.8
Q ss_pred ceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEec
Q 032505 21 IFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFET 62 (139)
Q Consensus 21 ~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t 62 (139)
...+.+.|.+..+ .-..-.+.+.+.+|++||..+|.+...+
T Consensus 45 ~~~f~I~l~~~~~-~~~~~~~~L~~~~p~~YP~~~P~i~l~~ 85 (138)
T 2yz0_A 45 QIIFEITLRSVDK-EPVESSITLHFAMTPMYPYTAPEIEFKN 85 (138)
T ss_dssp CSCEEEEEECSSC-SSCCCEEEEEEECCSSTTSSCCEEEEEC
T ss_pred CcEEEEEEecCCC-CCCceEEEEEEECCCCCCCCCCeEEEec
Confidence 3456677763322 1123478899999999999999998754
No 61
>3zqs_A E3 ubiquitin-protein ligase fancl; HET: P6G; 2.00A {Homo sapiens}
Probab=91.73 E-value=1.6 Score=31.32 Aligned_cols=65 Identities=15% Similarity=0.224 Sum_probs=48.3
Q ss_pred CCCceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccccCCcccCCCcEeeecCCCcCCCcccHHHHHHHH
Q 032505 18 GESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSI 97 (139)
Q Consensus 18 ~~~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~Hpni~~~G~icl~~l~~~W~p~~~i~~iL~~i 97 (139)
+.++...++.+..-. |....++|.++.+||.++|.+...-+. |. .-.|++..++.+++...
T Consensus 22 d~~~~~i~l~~~D~~-----gR~H~l~v~l~~~yp~~~P~~~~DlP~--~~------------~~~w~~~ssL~~v~~qF 82 (186)
T 3zqs_A 22 DTCFSTIKLKAEDAS-----GREHLITLKLKAKYPAESPDYFVDFPV--PF------------CASWTPQSSLISIYSQF 82 (186)
T ss_dssp CTTSSEEEEEEECTT-----SCEEEEEEECCTTTTTSCCEEECCCSS--CC------------CCCCCTTCCHHHHHHHH
T ss_pred cCCccEEEEEEEeCC-----CCeEEEEEEECCCCCCCCCeeEEcCCC--Cc------------ccccCCCccHHHHHHHH
Confidence 457788888887444 679999999999999999987643332 11 13799888888887776
Q ss_pred HHhh
Q 032505 98 QSLL 101 (139)
Q Consensus 98 ~~ll 101 (139)
+..+
T Consensus 83 ~~~L 86 (186)
T 3zqs_A 83 LAAI 86 (186)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6665
No 62
>1ukx_A GCN2, GCN2 EIF2alpha kinase; UBC-like fold, triple beta-turns, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.20.1.3
Probab=90.95 E-value=0.15 Score=34.22 Aligned_cols=23 Identities=22% Similarity=0.557 Sum_probs=20.5
Q ss_pred cEEEEEEEcCCCCCCCCCeeEEe
Q 032505 39 LSYKLSLRFPLDYPFKPPQVKFE 61 (139)
Q Consensus 39 g~f~~~i~f~~~YP~~pP~v~f~ 61 (139)
-.+.+.|.||++||..+|.|...
T Consensus 63 ~~~~L~v~~p~~YP~~~P~i~l~ 85 (137)
T 1ukx_A 63 VQVELRVKCPPTYPDVVPEIDLK 85 (137)
T ss_dssp CEEEEEECCCTTTTSSCCCCEEE
T ss_pred eEEEEEEECCCCCCCCCCcEEEe
Confidence 46889999999999999999874
No 63
>2dax_A Protein C21ORF6; RWD domain, alpha+beta sandwich fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.20.1.3
Probab=89.59 E-value=0.29 Score=33.53 Aligned_cols=24 Identities=21% Similarity=0.549 Sum_probs=20.8
Q ss_pred cEEEEEEEcCCCCCCCCCeeEEec
Q 032505 39 LSYKLSLRFPLDYPFKPPQVKFET 62 (139)
Q Consensus 39 g~f~~~i~f~~~YP~~pP~v~f~t 62 (139)
-.+.+.+.+|.+||..||.+....
T Consensus 73 ~~l~L~v~lP~~YP~~~P~i~l~~ 96 (152)
T 2dax_A 73 AMFSLACILPFKYPAVLPEITVRS 96 (152)
T ss_dssp EEEEEEEEECSSTTSSCCCCEEEC
T ss_pred ceEEEEEECCCCCCCCCCeEEEEc
Confidence 368899999999999999998665
No 64
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=85.43 E-value=0.16 Score=33.34 Aligned_cols=32 Identities=3% Similarity=0.040 Sum_probs=0.0
Q ss_pred CCCCcccHHHHHHhhch-HHHHHHHHHHHHhhc
Q 032505 105 NPESPLNSYAAALLNNK-EDYRKMVQKQYFAGE 136 (139)
Q Consensus 105 ~~~~p~N~~a~~~~~~~-~~f~~~~r~~~~~~a 136 (139)
....|.++++|++|.++ +.|.++||.|+.-+|
T Consensus 22 ~~~~PQDA~VA~qy~~~~~~f~~TAr~WT~~~a 54 (108)
T 2cwb_A 22 TTTEAVDAATAEKVFKQYANDNGVDGEWTYDDA 54 (108)
T ss_dssp ---------------------------------
T ss_pred ccCCchhHHHHHHHHhchhccccccccccccCc
Confidence 35678999999999999 999999999996555
No 65
>3rls_A YAF9, protein AF-9 homolog; yeats domain, histone, transcription; 1.70A {Saccharomyces cerevisiae} PDB: 3fk3_A
Probab=37.79 E-value=99 Score=21.65 Aligned_cols=45 Identities=20% Similarity=0.283 Sum_probs=33.4
Q ss_pred CCceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecccc
Q 032505 19 ESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCF 65 (139)
Q Consensus 19 ~~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~ 65 (139)
+...+|.+.+.|+.+.--..-+=++.+.+.+.||. |.-.+..+.|
T Consensus 30 ~~TH~WtVyVr~~~~edis~~v~KV~F~LHpSF~n--p~Rvv~~PPF 74 (175)
T 3rls_A 30 EHTHLWTIFVRGPQNEDISYFIKKVVFKLHDTYPN--PVRSIEAPPF 74 (175)
T ss_dssp TCCEEEEEEEECGGGCCCTTTEEEEEEECCTTSSS--CEEEECSSSE
T ss_pred CCcEEEEEEEECCCCCChhheEEEEEEEcCCCCCC--CcEEEeCCCC
Confidence 46779999999987754444577899999999974 6666655444
No 66
>3qrl_A Transcription initiation factor TFIID subunit 14; yeats domain, IG fold, nucleus, nuclear protein; HET: PGE; 1.70A {Saccharomyces cerevisiae} PDB: 2l7e_A
Probab=31.59 E-value=1.2e+02 Score=20.44 Aligned_cols=44 Identities=14% Similarity=0.236 Sum_probs=33.4
Q ss_pred CceEEE--EEEecCCCCCCC-CcEEEEEEEcCCCCCCCCCeeEEecccc
Q 032505 20 SIFTWI--GTIEGGKGTMYE-GLSYKLSLRFPLDYPFKPPQVKFETMCF 65 (139)
Q Consensus 20 ~~~~w~--~~i~Gp~~t~ye-gg~f~~~i~f~~~YP~~pP~v~f~t~i~ 65 (139)
-+.+|. +.+.|+.|.... .-+=++...+-+.|+ .|...+..+.|
T Consensus 31 ~~h~WtieV~vr~~~g~ei~~~~i~kV~f~LH~sF~--np~r~v~~pPF 77 (140)
T 3qrl_A 31 PVRQWSIEIVLLDDEGKEIPATIFDKVIYHLHPTFA--NPNRTFTDPPF 77 (140)
T ss_dssp CCEEEEEEEEEECTTSCEECCTTEEEEEEECCTTSS--SCEEEECSTTC
T ss_pred cccEeeEEEEEeCCCCCcCchheEEEEEEEeCCCCC--CCeEEEcCCCc
Confidence 346998 899999988654 456678889999887 48777776655
No 67
>2bum_A Protocatechuate 3,4-dioxygenase alpha chain; oxidoreductase, aromatic degradation, non-heme iron, beta-SA mixed alpha/beta structure; 1.80A {Acinetobacter SP} SCOP: b.3.6.1 PDB: 1eo2_A 1eob_A* 1eoc_A* 1eoa_A 2buq_A 2bur_A* 2but_A 2buu_A* 2buv_A* 2buw_A* 1eo9_A 2bux_A 2buy_A 2buz_A* 2bv0_A*
Probab=27.97 E-value=56 Score=23.42 Aligned_cols=26 Identities=12% Similarity=0.101 Sum_probs=22.1
Q ss_pred CCcEEEEEEEcCCCCCC-----CCCeeEEec
Q 032505 37 EGLSYKLSLRFPLDYPF-----KPPQVKFET 62 (139)
Q Consensus 37 egg~f~~~i~f~~~YP~-----~pP~v~f~t 62 (139)
+.|.|.|+-.+|.-||. .||.|.|.-
T Consensus 109 ~~G~y~F~TI~Pg~yp~~~G~~R~~HIH~~V 139 (209)
T 2bum_A 109 GTGFWSFNTIKPGAVPGRKGSTQAPHISLII 139 (209)
T ss_dssp TTCCEEEEEECCCCCBCSTTCBCCCCEEEEE
T ss_pred CCcEEEEEEEccCcccCCCCCccCcEEEEEE
Confidence 46899999999999998 788888753
No 68
>3zqs_A E3 ubiquitin-protein ligase fancl; HET: P6G; 2.00A {Homo sapiens}
Probab=26.87 E-value=58 Score=23.03 Aligned_cols=55 Identities=15% Similarity=0.128 Sum_probs=34.4
Q ss_pred CcEEEEEEEcCCCCCCCCCeeEEecc--ccCCcccCCCcEeeecCCCcCCCcccHHHHHHHH
Q 032505 38 GLSYKLSLRFPLDYPFKPPQVKFETM--CFHPNVDQYGNICLDILQDKWSSAYDCRTILLSI 97 (139)
Q Consensus 38 gg~f~~~i~f~~~YP~~pP~v~f~t~--i~Hpni~~~G~icl~~l~~~W~p~~~i~~iL~~i 97 (139)
|.-..+.|.+.+..|...|.++|.-+ ..+|.=. +++--...|.+..++.+=|..|
T Consensus 123 g~~vsl~i~vdP~~P~~lPe~~FlG~~~~v~~lr~-----~~~~nl~~Wd~~~~i~~NL~~i 179 (186)
T 3zqs_A 123 GNNVSINIEVDPRHPTMLPECFFLGADHVVKPLGI-----KLSRNIHLWDPENSVLQNLKDV 179 (186)
T ss_dssp ETTEEEEEECCTTSTTSCCEEEEEECHHHHHHHHH-----HHHHHGGGCCTTSCHHHHHHHH
T ss_pred CCCcEEEEEECCCCCCcCCceEEECChHHHHHHHH-----HHhhhHhhcCCCCCHHHHHHHH
Confidence 34466888999999999999999853 2111100 1100014799988876655554
No 69
>2jrw_A Cyclic extended PEP.1; acetylcholine receptor, phage display, peptide cyclization, immune system; NMR {Synthetic}
Probab=26.39 E-value=16 Score=16.93 Aligned_cols=17 Identities=29% Similarity=0.630 Sum_probs=9.5
Q ss_pred CCCCCeeEEeccccCCc
Q 032505 52 PFKPPQVKFETMCFHPN 68 (139)
Q Consensus 52 P~~pP~v~f~t~i~Hpn 68 (139)
|..-|.-.|..+.|||-
T Consensus 4 pmtlpenyfserpyhpp 20 (26)
T 2jrw_A 4 PMTLPENYFSERPYHPP 20 (26)
T ss_dssp CCCCSSSSCCSSSCCSC
T ss_pred ccccchhhcccCCCCCC
Confidence 34444445666667763
No 70
>4g2e_A Peroxiredoxin; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 1.40A {Sulfolobus tokodaii} PDB: 2ywn_A 3hjp_A
Probab=22.36 E-value=75 Score=20.69 Aligned_cols=33 Identities=18% Similarity=0.198 Sum_probs=21.5
Q ss_pred cccCCCcEeeecCCCcCCCcccHHHHHHHHHHh
Q 032505 68 NVDQYGNICLDILQDKWSSAYDCRTILLSIQSL 100 (139)
Q Consensus 68 ni~~~G~icl~~l~~~W~p~~~i~~iL~~i~~l 100 (139)
-||++|+|-...+...+....++.+++..|++|
T Consensus 124 lID~~G~I~~~~~~~~~~~~~~~~eil~~l~~L 156 (157)
T 4g2e_A 124 VIDKEGKVRYKWVSDDPTKEPPYDEIEKVVKSL 156 (157)
T ss_dssp EECTTSBEEEEEEESSTTCCCCHHHHHHHHHHT
T ss_pred EECCCCEEEEEEECCCCCCCCCHHHHHHHHHHh
Confidence 367788876544444444455678888888765
No 71
>2k6w_A Putative uncharacterized protein TTHA1943; PCUA, copper transfer protein, metal transport; NMR {Thermus thermophilus} PDB: 2k6y_A 2k6z_A 2k70_A
Probab=21.22 E-value=1.2e+02 Score=19.60 Aligned_cols=26 Identities=23% Similarity=0.189 Sum_probs=23.3
Q ss_pred EEEEEecCCCCCCCCcEEEEEEEcCC
Q 032505 24 WIGTIEGGKGTMYEGLSYKLSLRFPL 49 (139)
Q Consensus 24 w~~~i~Gp~~t~yegg~f~~~i~f~~ 49 (139)
+|+.+.|....+=+|..+.++|.|-+
T Consensus 82 ~HvML~gl~~~l~~G~~v~ltL~Fe~ 107 (120)
T 2k6w_A 82 YHFMLLGLKRPLKAGEEVELDLLFAG 107 (120)
T ss_dssp EEEEEEEESSCBCTTCEEEEEEEETT
T ss_pred eEEEEeCCCCCCCCCCEEEEEEEECC
Confidence 78999999988889999999999964
No 72
>3pft_A Flavin reductase; desulfurization, oxidoreductase; HET: FMN; 1.60A {Mycobacterium goodii} SCOP: b.45.1.0
Probab=21.00 E-value=51 Score=22.07 Aligned_cols=30 Identities=20% Similarity=0.525 Sum_probs=24.2
Q ss_pred CCCCeeEEe---ccccCCcccCCCcEeeecCCC
Q 032505 53 FKPPQVKFE---TMCFHPNVDQYGNICLDILQD 82 (139)
Q Consensus 53 ~~pP~v~f~---t~i~Hpni~~~G~icl~~l~~ 82 (139)
..||.|.+. +.--|++|.++|.+|++++.+
T Consensus 42 ~~PP~v~v~i~~~~~t~~~i~~~~~F~Vnvl~~ 74 (157)
T 3pft_A 42 LEPPLVAFAVQNSSTTWPKLKDLPSLGISVLGE 74 (157)
T ss_dssp TTTTEEEEEEETTCSSHHHHTTSSCEEEEECBT
T ss_pred CCCcEEEEEECCCCchHHHHHhCCEEEEEECCH
Confidence 468888775 346789999999999999964
No 73
>2yzh_A Probable thiol peroxidase; redox protein, antioxidant, oxidoreductase, STRU genomics, NPPSFA; 1.85A {Aquifex aeolicus}
Probab=20.42 E-value=68 Score=21.01 Aligned_cols=34 Identities=12% Similarity=0.244 Sum_probs=20.5
Q ss_pred cccCCCcEeeecCCCcCCCcccHHHHHHHHHHhh
Q 032505 68 NVDQYGNICLDILQDKWSSAYDCRTILLSIQSLL 101 (139)
Q Consensus 68 ni~~~G~icl~~l~~~W~p~~~i~~iL~~i~~ll 101 (139)
-|+.+|+|-............+..+++..|+.+|
T Consensus 138 liD~~G~i~~~~~~~~~~~~~~~~~ll~~l~~ll 171 (171)
T 2yzh_A 138 IIDKEGKVAYVQLVPEITEEPNYDEVVNKVKELI 171 (171)
T ss_dssp EECTTSBEEEEEECSBTTSCCCCHHHHHHHHHC-
T ss_pred EEcCCCeEEEEEeCCCcCCCCCHHHHHHHHHhhC
Confidence 3456788776544333334456778888887764
No 74
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=20.03 E-value=1.1e+02 Score=18.29 Aligned_cols=41 Identities=20% Similarity=0.248 Sum_probs=28.3
Q ss_pred HHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhcc
Q 032505 97 IQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEF 137 (139)
Q Consensus 97 i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~~r~~~~~~a~ 137 (139)
|+.|+..-++...++.++..++.+= ..|...+-..+.+.|.
T Consensus 11 L~~Lv~~idp~~~ld~~vee~ll~lADdFV~~V~~~ac~lAK 52 (76)
T 1h3o_B 11 LQDLVREVDPNEQLDEDVEEMLLQIADDFIESVVTAACQLAR 52 (76)
T ss_dssp HHHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444443356677888888888777 8888888777766654
Done!