BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032506
(139 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2AVA|A Chain A, Solution Structure Of Stearoyl-Acyl Carrier Protein
pdb|2FVA|A Chain A, Structure Of 18:0-Acp With Docked Fatty Acid
pdb|2FVE|A Chain A, Structure Of 10:0-Acp (Protein Alone)
pdb|2FVF|A Chain A, Structure Of 10:0-Acp (Protein With Docked Fatty Acid)
Length = 82
Score = 88.2 bits (217), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 47/82 (57%), Positives = 57/82 (69%)
Query: 57 AKPETVDKVCQIVKKQLALPADTTVTGESKFAALGADSLDTVEIVMGLXXXXXXXXXXXS 116
AK ET+DKV IVK++LAL AD VT +S+F+ LGADSLDTVEIVM L
Sbjct: 1 AKKETIDKVSDIVKEKLALGADVVVTADSEFSKLGADSLDTVEIVMNLEEEFGINVDEDK 60
Query: 117 AQTISTVQDAADLIEKLIETKS 138
AQ IST+Q AAD+IE L+E K+
Sbjct: 61 AQDISTIQQAADVIEGLLEKKA 82
>pdb|2XZ0|D Chain D, The Structure Of The 2:1 (Partially Occupied) Complex
Between Stearoyl Acyl Carrier Protein Desaturase From
Ricinus Communis (Castor Bean) And Acyl Carrier Protein.
pdb|2XZ1|C Chain C, The Structure Of The 2:2 (Fully Occupied) Complex Between
Stearoyl Acyl Carrier Protein Desaturase From Ricinus
Communis (Castor Bean) And Acyl Carrier Protein.
pdb|2XZ1|D Chain D, The Structure Of The 2:2 (Fully Occupied) Complex Between
Stearoyl Acyl Carrier Protein Desaturase From Ricinus
Communis (Castor Bean) And Acyl Carrier Protein
Length = 82
Score = 86.3 bits (212), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 46/82 (56%), Positives = 56/82 (68%)
Query: 57 AKPETVDKVCQIVKKQLALPADTTVTGESKFAALGADSLDTVEIVMGLXXXXXXXXXXXS 116
AK ET+DKV IVK++LAL AD VT +S+F+ LGAD LDTVEIVM L
Sbjct: 1 AKKETIDKVSDIVKEKLALGADVVVTADSEFSKLGADXLDTVEIVMNLEEEFGINVDEDK 60
Query: 117 AQTISTVQDAADLIEKLIETKS 138
AQ IST+Q AAD+IE L+E K+
Sbjct: 61 AQDISTIQQAADVIEGLLEKKA 82
>pdb|3GZL|A Chain A, Crystal Structure Of Holo Pfacp Disulfide-Linked Dimer
pdb|3GZM|A Chain A, Crystal Structure Of Holo Pfacp Reduced Monomer
pdb|3GZM|B Chain B, Crystal Structure Of Holo Pfacp Reduced Monomer
Length = 81
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 38/72 (52%)
Query: 61 TVDKVCQIVKKQLALPADTTVTGESKFAALGADSLDTVEIVMGLXXXXXXXXXXXSAQTI 120
T D + +I+ KQL++ D + LGADSLD VE++M L A I
Sbjct: 6 TFDDIKKIISKQLSVEEDKIQMNSNFTKDLGADSLDLVELIMALEEKFNVTISDQDALKI 65
Query: 121 STVQDAADLIEK 132
+TVQDA D IEK
Sbjct: 66 NTVQDAIDYIEK 77
>pdb|2FQ0|A Chain A, Solution Structure Of Major Conformation Of Holo-Acyl
Carrier Protein From Malaria Parasite Plasmodium
Falciparum
pdb|2FQ2|A Chain A, Solution Structure Of Minor Conformation Of Holo-Acyl
Carrier Protein From Malaria Parasite Plasmodium
Falciparum
Length = 79
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 38/72 (52%)
Query: 61 TVDKVCQIVKKQLALPADTTVTGESKFAALGADSLDTVEIVMGLXXXXXXXXXXXSAQTI 120
T D + +I+ KQL++ D + LGADSLD VE++M L A I
Sbjct: 4 TFDDIKKIISKQLSVEEDKIQMNSNFTKDLGADSLDLVELIMALEEKFNVTISDQDALKI 63
Query: 121 STVQDAADLIEK 132
+TVQDA D IEK
Sbjct: 64 NTVQDAIDYIEK 75
>pdb|2L3V|A Chain A, Nmr Structure Of Acyl Carrier Protein From Brucella
Melitensis
Length = 79
Score = 49.7 bits (117), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 40/73 (54%)
Query: 60 ETVDKVCQIVKKQLALPADTTVTGESKFAALGADSLDTVEIVMGLXXXXXXXXXXXSAQT 119
+T ++V +IV + L + AD G S LGADSLDTVE+VM +A+T
Sbjct: 4 DTAERVKKIVVEHLGVDADKVTEGASFIDDLGADSLDTVELVMAFEEEFGVEIPDDAAET 63
Query: 120 ISTVQDAADLIEK 132
I TV DA I+K
Sbjct: 64 ILTVGDAVKFIDK 76
>pdb|3EJB|A Chain A, Crystal Structure Of P450bioi In Complex With
Tetradecanoic Acid Ligated Acyl Carrier Protein
pdb|3EJB|C Chain C, Crystal Structure Of P450bioi In Complex With
Tetradecanoic Acid Ligated Acyl Carrier Protein
pdb|3EJB|E Chain E, Crystal Structure Of P450bioi In Complex With
Tetradecanoic Acid Ligated Acyl Carrier Protein
pdb|3EJB|G Chain G, Crystal Structure Of P450bioi In Complex With
Tetradecanoic Acid Ligated Acyl Carrier Protein
pdb|3EJD|A Chain A, Crystal Structure Of P450bioi In Complex With Hexadec-9z-
Enoic Acid Ligated Acyl Carrier Protein
pdb|3EJD|C Chain C, Crystal Structure Of P450bioi In Complex With Hexadec-9z-
Enoic Acid Ligated Acyl Carrier Protein
pdb|3EJD|E Chain E, Crystal Structure Of P450bioi In Complex With Hexadec-9z-
Enoic Acid Ligated Acyl Carrier Protein
pdb|3EJD|G Chain G, Crystal Structure Of P450bioi In Complex With Hexadec-9z-
Enoic Acid Ligated Acyl Carrier Protein
pdb|3EJE|A Chain A, Crystal Structure Of P450bioi In Complex With Octadec-9z-
Enoic Acid Ligated Acyl Carrier Protein
pdb|3EJE|C Chain C, Crystal Structure Of P450bioi In Complex With Octadec-9z-
Enoic Acid Ligated Acyl Carrier Protein
pdb|3EJE|E Chain E, Crystal Structure Of P450bioi In Complex With Octadec-9z-
Enoic Acid Ligated Acyl Carrier Protein
pdb|3EJE|G Chain G, Crystal Structure Of P450bioi In Complex With Octadec-9z-
Enoic Acid Ligated Acyl Carrier Protein
Length = 97
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 36/68 (52%)
Query: 63 DKVCQIVKKQLALPADTTVTGESKFAALGADSLDTVEIVMGLXXXXXXXXXXXSAQTIST 122
++V +I+ +QL + + S LGADSLDTVE+VM L A+ I+T
Sbjct: 25 ERVKKIIGEQLGVKQEEVTNNASFVEDLGADSLDTVELVMALEEEFDTEIPDEEAEKITT 84
Query: 123 VQDAADLI 130
VQ A D I
Sbjct: 85 VQAAIDYI 92
>pdb|1L0H|A Chain A, Crystal Structure Of Butyryl-Acp From E.Coli
pdb|2FHS|C Chain C, Structure Of Acyl Carrier Protein Bound To Fabi, The Enoyl
Reductase From Escherichia Coli
pdb|3NY7|B Chain B, Stas Domain Of Ychm Bound To Acp
Length = 78
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 36/68 (52%)
Query: 63 DKVCQIVKKQLALPADTTVTGESKFAALGADSLDTVEIVMGLXXXXXXXXXXXSAQTIST 122
++V +I+ +QL + + S LGADSLDTVE+VM L A+ I+T
Sbjct: 6 ERVKKIIGEQLGVKQEEVTNNASFVEDLGADSLDTVELVMALEEEFDTEIPDEEAEKITT 65
Query: 123 VQDAADLI 130
VQ A D I
Sbjct: 66 VQAAIDYI 73
>pdb|1T8K|A Chain A, Crystal Structure Of Apo Acyl Carrier Protein From E. Coli
pdb|2FAC|A Chain A, Crystal Structure Of E. Coli Hexanoyl-acp
pdb|2FAC|B Chain B, Crystal Structure Of E. Coli Hexanoyl-acp
pdb|2FAD|A Chain A, Crystal Structure Of E. Coli Heptanoyl-Acp
pdb|2FAD|B Chain B, Crystal Structure Of E. Coli Heptanoyl-Acp
pdb|2FAE|A Chain A, Crystal Structure Of E. Coli Decanoyl-Acp
pdb|2FAE|B Chain B, Crystal Structure Of E. Coli Decanoyl-Acp
pdb|1ACP|A Chain A, Refinement Of The Nmr Structures For Acyl Carrier Protein
With Scalar Coupling Data
pdb|4ETW|D Chain D, Structure Of The Enzyme-Acp Substrate Gatekeeper Complex
Required For Biotin Synthesis
pdb|4ETW|B Chain B, Structure Of The Enzyme-Acp Substrate Gatekeeper Complex
Required For Biotin Synthesis
Length = 77
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 36/68 (52%)
Query: 63 DKVCQIVKKQLALPADTTVTGESKFAALGADSLDTVEIVMGLXXXXXXXXXXXSAQTIST 122
++V +I+ +QL + + S LGADSLDTVE+VM L A+ I+T
Sbjct: 5 ERVKKIIGEQLGVKQEEVTNNASFVEDLGADSLDTVELVMALEEEFDTEIPDEEAEKITT 64
Query: 123 VQDAADLI 130
VQ A D I
Sbjct: 65 VQAAIDYI 72
>pdb|2K92|A Chain A, Structural Modification Of Acyl Carrier Protein By Butyryl
Group
pdb|2K93|A Chain A, Structural Modification Of Acyl Carrier Protein By Butyryl
Group
pdb|2K94|A Chain A, Structural Modification Of Acyl Carrier Protein By Butyryl
Group
Length = 77
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 36/68 (52%)
Query: 63 DKVCQIVKKQLALPADTTVTGESKFAALGADSLDTVEIVMGLXXXXXXXXXXXSAQTIST 122
++V +I+ +QL + + S LGADSLDTVE+VM L A+ I+T
Sbjct: 5 ERVKKIIGQQLGVKQEEVTNNASFVEDLGADSLDTVELVMALEEEFDTEIPDEEAEKITT 64
Query: 123 VQDAADLI 130
VQ A D I
Sbjct: 65 VQAAIDYI 72
>pdb|1X3O|A Chain A, Crystal Structure Of The Acyl Carrier Protein From Thermus
Thermophilus Hb8
Length = 80
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 41/72 (56%), Gaps = 2/72 (2%)
Query: 60 ETVDKVCQIVKKQLALPADTTVTGESKFAA-LGADSLDTVEIVMGLXXXXXXXXXXXSAQ 118
E +KV ++ +L + + VT E++F LGADSLDTVE++MGL A+
Sbjct: 5 EIFEKVKAVIADKLQVEPEK-VTLEARFIEDLGADSLDTVELIMGLEDEFGLEISDEEAE 63
Query: 119 TISTVQDAADLI 130
I TV+DA + I
Sbjct: 64 KIRTVKDAVEYI 75
>pdb|1L0I|A Chain A, Crystal Structure Of Butyryl-Acp I62m Mutant
Length = 78
Score = 43.5 bits (101), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 36/68 (52%)
Query: 63 DKVCQIVKKQLALPADTTVTGESKFAALGADSLDTVEIVMGLXXXXXXXXXXXSAQTIST 122
++V +I+ +QL + + S LGADSLDTVE+VM L A+ ++T
Sbjct: 6 ERVKKIIGEQLGVKQEEVTNNASFVEDLGADSLDTVELVMALEEEFDTEIPDEEAEKMTT 65
Query: 123 VQDAADLI 130
VQ A D I
Sbjct: 66 VQAAIDYI 73
>pdb|4DXE|H Chain H, 2.52 Angstrom Resolution Crystal Structure Of The
Acyl-Carrier-Protein Synthase (Acps)-Acyl Carrier
Protein (Acp) Protein-Protein Complex From
Staphylococcus Aureus Subsp. Aureus Col
pdb|4DXE|L Chain L, 2.52 Angstrom Resolution Crystal Structure Of The
Acyl-Carrier-Protein Synthase (Acps)-Acyl Carrier
Protein (Acp) Protein-Protein Complex From
Staphylococcus Aureus Subsp. Aureus Col
pdb|4DXE|K Chain K, 2.52 Angstrom Resolution Crystal Structure Of The
Acyl-Carrier-Protein Synthase (Acps)-Acyl Carrier
Protein (Acp) Protein-Protein Complex From
Staphylococcus Aureus Subsp. Aureus Col
pdb|4DXE|G Chain G, 2.52 Angstrom Resolution Crystal Structure Of The
Acyl-Carrier-Protein Synthase (Acps)-Acyl Carrier
Protein (Acp) Protein-Protein Complex From
Staphylococcus Aureus Subsp. Aureus Col
pdb|4DXE|J Chain J, 2.52 Angstrom Resolution Crystal Structure Of The
Acyl-Carrier-Protein Synthase (Acps)-Acyl Carrier
Protein (Acp) Protein-Protein Complex From
Staphylococcus Aureus Subsp. Aureus Col
pdb|4DXE|I Chain I, 2.52 Angstrom Resolution Crystal Structure Of The
Acyl-Carrier-Protein Synthase (Acps)-Acyl Carrier
Protein (Acp) Protein-Protein Complex From
Staphylococcus Aureus Subsp. Aureus Col
Length = 101
Score = 42.4 bits (98), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Query: 60 ETVDKVCQIVKKQLALPADTTVTGESKFAA-LGADSLDTVEIVMGLXXXXXXXXXXXSAQ 118
E DKV I+ +L + AD VT ++ F LGADSLD E+VM L A+
Sbjct: 26 ENFDKVKDIIVDRLGVDADK-VTEDASFKDDLGADSLDIAELVMELEDEFGTEIPDEEAE 84
Query: 119 TISTVQDAADLIEKL 133
I+TV DA I L
Sbjct: 85 KINTVGDAVKFINSL 99
>pdb|2L0Q|A Chain A, Nmr Solution Structure Of Vibrio Harveyi Acyl Carrier
Protein (Acp)
Length = 80
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Query: 63 DKVCQIVKKQLALPADTTVTGESKFAA-LGADSLDTVEIVMGLXXXXXXXXXXXSAQTIS 121
++V +I+ +QL + + V E+ F LGADSLDTVE+VM L A+ I+
Sbjct: 9 ERVKKIIVEQLGVD-EAEVKNEASFVDDLGADSLDTVELVMALEEEFDTEIPDEEAEKIT 67
Query: 122 TVQDAADLI 130
TVQ A D +
Sbjct: 68 TVQAAIDYV 76
>pdb|2QNW|A Chain A, Toxoplasma Gondii Apicoplast-Targeted Acyl Carrier Protein
Length = 82
Score = 39.3 bits (90), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 62 VDKVCQIVKKQLALPADTTVTGESKF-AALGADSLDTVEIVMGLXXXXXXXXXXXSAQTI 120
+++V +V QL + + ES F L ADSLD+VE+VM A I
Sbjct: 9 LERVKDVVADQLGVDR-ARINPESNFIKDLDADSLDSVELVMAFEEKFGVSIPDEEASKI 67
Query: 121 STVQDAADLIEK 132
+TVQDA IEK
Sbjct: 68 ATVQDALSYIEK 79
>pdb|2EHS|A Chain A, Crystal Structure Of Acyl Carrier Protein From Aquifex
Aeolicus (Form 1)
pdb|2EHT|A Chain A, Crystal Structure Of Acyl Carrier Protein From Aquifex
Aeolicus (Form 2)
Length = 77
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Query: 63 DKVCQIVKKQLALPADTTVTGESKFAA-LGADSLDTVEIVMGLXXXXXXXXXXXSAQTIS 121
++V +I+ +QL + + +T E+KF LGADSLD VE++M A+ I
Sbjct: 4 ERVKEIIAEQLGVEKEK-ITPEAKFVEDLGADSLDVVELIMAFEEEFGIEIPDEDAEKIQ 62
Query: 122 TVQDAADLI 130
TV D + +
Sbjct: 63 TVGDVINYL 71
>pdb|2X2B|A Chain A, Crystal Structure Of Malonyl-Acp (Acyl Carrier Protein)
From Bacillus Subtilis
Length = 78
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 60 ETVDKVCQIVKKQLALPADTTVTGESKFAA-LGADSLDTVEIVMGLXXXXXXXXXXXSAQ 118
+T+++V +I+ +L + + V E+ F LGADSLD VE+VM L A+
Sbjct: 4 DTLERVTKIIVDRLGVD-EADVKLEASFKEDLGADSLDVVELVMELEDEFDMEISDEDAE 62
Query: 119 TISTVQDAADLIEK 132
I+TV DA + I+
Sbjct: 63 KIATVGDAVNYIQN 76
>pdb|1HY8|A Chain A, Solution Structure Of B. Subtilis Acyl Carrier Protein
Length = 76
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 60 ETVDKVCQIVKKQLALPADTTVTGESKFAA-LGADSLDTVEIVMGLXXXXXXXXXXXSAQ 118
+T+++V +I+ +L + + V E+ F LGADSLD VE+VM L A+
Sbjct: 2 DTLERVTKIIVDRLGVD-EADVKLEASFKEDLGADSLDVVELVMELEDEFDMEISDEDAE 60
Query: 119 TISTVQDAADLIEK 132
I+TV DA + I+
Sbjct: 61 KIATVGDAVNYIQN 74
>pdb|1F80|D Chain D, Holo-(Acyl Carrier Protein) Synthase In Complex With Holo-
(Acyl Carrier Protein)
pdb|1F80|E Chain E, Holo-(Acyl Carrier Protein) Synthase In Complex With Holo-
(Acyl Carrier Protein)
pdb|1F80|F Chain F, Holo-(Acyl Carrier Protein) Synthase In Complex With Holo-
(Acyl Carrier Protein)
Length = 81
Score = 36.6 bits (83), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Query: 60 ETVDKVCQIVKKQLALPADTTVTGESKFAA-LGADSLDTVEIVMGLXXXXXXXXXXXSAQ 118
+T+++V +I+ +L + + V E+ F LGAD LD VE+VM L A+
Sbjct: 7 DTLERVTKIIVDRLGVD-EADVKLEASFKEDLGADXLDVVELVMELEDEFDMEISDEDAE 65
Query: 119 TISTVQDAADLIEK 132
I+TV DA + I+
Sbjct: 66 KIATVGDAVNYIQN 79
>pdb|2LOL|A Chain A, Nmr Structure Of An Acyl-Carrier Protein From Rickettsia
Prowazekii, Seattle Structural Genomics Center For
Infectious Disease (Ssgcid)
Length = 81
Score = 30.4 bits (67), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
Query: 61 TVDKVCQIVKKQLA--LPADT-TVTGESKFAA-LGADSLDTVEIVMGLXXXXXXXXXXXS 116
T DK+ Q V + +A L D +T +S+F L ADSLDTVE++M +
Sbjct: 3 TTDKIEQKVIEMVAEKLNKDKAIITTDSRFIEDLKADSLDTVELMMAIEVEYGIDIPDDE 62
Query: 117 AQTISTVQDAADLI 130
A I TV D I
Sbjct: 63 ATKIKTVSDVIKYI 76
>pdb|1N82|A Chain A, The High-Resolution Crystal Structure Of Ixt6, A
Thermophilic, Intracellular Xylanase From G.
Stearothermophilus
pdb|1N82|B Chain B, The High-Resolution Crystal Structure Of Ixt6, A
Thermophilic, Intracellular Xylanase From G.
Stearothermophilus
pdb|3MUA|A Chain A, Enzyme-Substrate Interactions Of Ixt6, The Intracellular
Xylanase Of G. Stearothermophilus.
pdb|3MUA|B Chain B, Enzyme-Substrate Interactions Of Ixt6, The Intracellular
Xylanase Of G. Stearothermophilus
Length = 331
Score = 29.3 bits (64), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 7/54 (12%)
Query: 39 SFPSLRMRSAPRFRVSCAAKPETVDKVCQIVKKQLALPADTTVTGES--KFAAL 90
S PSLR A FR+ A P T++ ++KQL + ++T E+ KF L
Sbjct: 4 SLPSLRDVFANDFRIGAAVNPVTIE-----MQKQLLIDHVNSITAENHMKFEHL 52
>pdb|2Q8X|A Chain A, The High-resolution Crystal Structure Of Ixt6, A
Thermophilic, Intracellular Xylanase From G.
Stearothermophilus
pdb|2Q8X|B Chain B, The High-resolution Crystal Structure Of Ixt6, A
Thermophilic, Intracellular Xylanase From G.
Stearothermophilus
pdb|3MSD|A Chain A, Enzyme-Substrate Interactions Of Ixt6, The Intracellular
Xylanase Of G. Stearothermophilus.
pdb|3MSD|B Chain B, Enzyme-Substrate Interactions Of Ixt6, The Intracellular
Xylanase Of G. Stearothermophilus.
pdb|3MSG|A Chain A, Enzyme-Substrate Interactions Of Ixt6, The Intracellular
Xylanase Of G. Stearothermophilus.
pdb|3MSG|B Chain B, Enzyme-Substrate Interactions Of Ixt6, The Intracellular
Xylanase Of G. Stearothermophilus
Length = 331
Score = 29.3 bits (64), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 7/54 (12%)
Query: 39 SFPSLRMRSAPRFRVSCAAKPETVDKVCQIVKKQLALPADTTVTGES--KFAAL 90
S PSLR A FR+ A P T++ ++KQL + ++T E+ KF L
Sbjct: 4 SLPSLRDVFANDFRIGAAVNPVTIE-----MQKQLLIDHVNSITAENHMKFEHL 52
>pdb|3MS8|A Chain A, Enzyme-Substrate Interactions Of Ixt6, The Intracellular
Xylanase Of G. Stearothermophilus.
pdb|3MS8|B Chain B, Enzyme-Substrate Interactions Of Ixt6, The Intracellular
Xylanase Of G. Stearothermophilus
Length = 331
Score = 29.3 bits (64), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 7/54 (12%)
Query: 39 SFPSLRMRSAPRFRVSCAAKPETVDKVCQIVKKQLALPADTTVTGES--KFAAL 90
S PSLR A FR+ A P T++ ++KQL + ++T E+ KF L
Sbjct: 4 SLPSLRDVFANDFRIGAAVNPVTIE-----MQKQLLIDHVNSITAENHMKFEHL 52
>pdb|3MUI|A Chain A, Enzyme-Substrate Interactions Of Ixt6, The Intracellular
Xylanase Of G. Stearothermophilus.
pdb|3MUI|B Chain B, Enzyme-Substrate Interactions Of Ixt6, The Intracellular
Xylanase Of G. Stearothermophilus
Length = 331
Score = 29.3 bits (64), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 7/54 (12%)
Query: 39 SFPSLRMRSAPRFRVSCAAKPETVDKVCQIVKKQLALPADTTVTGES--KFAAL 90
S PSLR A FR+ A P T++ ++KQL + ++T E+ KF L
Sbjct: 4 SLPSLRDVFANDFRIGAAVNPVTIE-----MQKQLLIDHVNSITAENHMKFEHL 52
>pdb|4DI1|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Echa17 From
Mycobacterium Marinum
pdb|4DI1|B Chain B, Crystal Structure Of Enoyl-Coa Hydratase Echa17 From
Mycobacterium Marinum
pdb|4DI1|C Chain C, Crystal Structure Of Enoyl-Coa Hydratase Echa17 From
Mycobacterium Marinum
Length = 277
Score = 27.3 bits (59), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 33/83 (39%), Gaps = 23/83 (27%)
Query: 37 GKSFPSLRMRSAPRFRVSCAAKPETVDKVCQIVKK--------------QLALPADTTVT 82
G P LR +AP + + E +D V I K LAL AD V+
Sbjct: 83 GDDMPELRTLNAPEADTAARVRLEAIDAVAAIPKPTVAAVTGYALGAGLTLALAADWRVS 142
Query: 83 GES-KFAALGADSLDTVEIVMGL 104
G++ KF A EI+ GL
Sbjct: 143 GDNVKFGA--------TEILAGL 157
>pdb|3GK0|A Chain A, Crystal Structure Of Pyridoxal Phosphate Biosynthetic
Protein From Burkholderia Pseudomallei
pdb|3GK0|B Chain B, Crystal Structure Of Pyridoxal Phosphate Biosynthetic
Protein From Burkholderia Pseudomallei
pdb|3GK0|C Chain C, Crystal Structure Of Pyridoxal Phosphate Biosynthetic
Protein From Burkholderia Pseudomallei
pdb|3GK0|D Chain D, Crystal Structure Of Pyridoxal Phosphate Biosynthetic
Protein From Burkholderia Pseudomallei
pdb|3GK0|E Chain E, Crystal Structure Of Pyridoxal Phosphate Biosynthetic
Protein From Burkholderia Pseudomallei
pdb|3GK0|F Chain F, Crystal Structure Of Pyridoxal Phosphate Biosynthetic
Protein From Burkholderia Pseudomallei
pdb|3GK0|G Chain G, Crystal Structure Of Pyridoxal Phosphate Biosynthetic
Protein From Burkholderia Pseudomallei
pdb|3GK0|H Chain H, Crystal Structure Of Pyridoxal Phosphate Biosynthetic
Protein From Burkholderia Pseudomallei
Length = 278
Score = 27.3 bits (59), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 42 SLRMRSAPRFRVSCAAKPETVDKVCQI 68
+LR R R + CA PE +D C+I
Sbjct: 88 TLRPRVKTRMNLECAVTPEMLDIACEI 114
>pdb|1A6J|A Chain A, Nitrogen Regulatory Bacterial Protein Iia-Nitrogen
pdb|1A6J|B Chain B, Nitrogen Regulatory Bacterial Protein Iia-Nitrogen
Length = 163
Score = 26.6 bits (57), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 20/35 (57%)
Query: 42 SLRMRSAPRFRVSCAAKPETVDKVCQIVKKQLALP 76
S+ R R RV C +K ++ + ++ KQL+LP
Sbjct: 12 SVLNRECTRSRVHCQSKKRALEIISELAAKQLSLP 46
>pdb|2DNW|A Chain A, Solution Structure Of Rsgi Ruh-059, An Acp Domain Of Acyl
Carrier Protein, Mitochondrial [precursor] From Human
Cdna
Length = 99
Score = 26.2 bits (56), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 27/68 (39%)
Query: 63 DKVCQIVKKQLALPADTTVTGESKFAALGADSLDTVEIVMGLXXXXXXXXXXXSAQTIST 122
D+V ++K + + LG DSLD VEI+M + A+ +
Sbjct: 18 DRVLYVLKLYDKIDPEKLSVNSHFMKDLGLDSLDQVEIIMAMEDEFGFEIPDIDAEKLMC 77
Query: 123 VQDAADLI 130
Q+ D I
Sbjct: 78 PQEIVDYI 85
>pdb|3LMO|A Chain A, Crystal Structure Of Specialized Acyl Carrier Protein
(Rpa2022) From Rhodopseudomonas Palustris, Northeast
Structural Genomics Consortium Target Rpr324
pdb|2KW2|A Chain A, Solution Nmr Of The Specialized Acyl Carrier Protein
(Rpa2022) From Rhodopseudomonas Palustris, Northeast
Structural Genomics Consortium Target Rpr324
pdb|2LL8|A Chain A, Solution Nmr Structure Of The Specialized Holo-Acyl
Carrier Protein Rpa2022 From Rhodopseudomonas Palustris
Refined With Nh Rdcs, Northeast Structural Genomics
Consortium Target Rpr324
pdb|2LPK|A Chain A, Solution Nmr Of The Specialized Apo-Acyl Carrier Protein
(Rpa2022) From Rhodopseudomonas Palustris, Northeast
Structural Genomics Consortium Target Rpr324
Length = 101
Score = 25.4 bits (54), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 21/44 (47%)
Query: 61 TVDKVCQIVKKQLALPADTTVTGESKFAALGADSLDTVEIVMGL 104
T D+V I+ + +P +T LG DSLD ++I +
Sbjct: 4 TFDRVATIIAETCDIPRETITPESHAIDDLGIDSLDFLDIAFAI 47
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.124 0.336
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,643,452
Number of Sequences: 62578
Number of extensions: 70401
Number of successful extensions: 153
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 128
Number of HSP's gapped (non-prelim): 32
length of query: 139
length of database: 14,973,337
effective HSP length: 89
effective length of query: 50
effective length of database: 9,403,895
effective search space: 470194750
effective search space used: 470194750
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 46 (22.3 bits)