Query 032506
Match_columns 139
No_of_seqs 329 out of 1267
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 14:58:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032506.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032506hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1748 Acyl carrier protein/N 99.9 2.6E-23 5.6E-28 151.1 3.0 82 55-137 48-130 (131)
2 PRK07117 acyl carrier protein; 99.8 3.1E-21 6.7E-26 130.1 7.6 78 56-134 1-79 (79)
3 PRK05828 acyl carrier protein; 99.8 6.9E-21 1.5E-25 129.8 8.8 82 56-138 1-83 (84)
4 PRK05350 acyl carrier protein; 99.8 2.9E-20 6.4E-25 125.3 7.9 79 56-135 2-81 (82)
5 CHL00124 acpP acyl carrier pro 99.8 6.7E-20 1.5E-24 123.1 7.8 81 56-137 1-82 (82)
6 PRK05883 acyl carrier protein; 99.8 1.3E-19 2.9E-24 125.0 9.4 80 55-135 9-89 (91)
7 PTZ00171 acyl carrier protein; 99.8 1.7E-19 3.6E-24 134.6 9.0 88 49-137 59-147 (148)
8 PRK07639 acyl carrier protein; 99.8 2.3E-19 4.9E-24 122.6 9.0 82 56-137 1-85 (86)
9 PRK08172 putative acyl carrier 99.8 1.5E-19 3.2E-24 122.6 7.7 76 60-136 4-80 (82)
10 PRK12449 acyl carrier protein; 99.8 2.9E-19 6.4E-24 119.4 8.6 78 56-134 1-79 (80)
11 TIGR00517 acyl_carrier acyl ca 99.7 4.7E-18 1E-22 112.8 7.4 74 59-133 2-76 (77)
12 PRK06508 acyl carrier protein; 99.7 5.2E-18 1.1E-22 117.6 7.2 80 59-139 2-93 (93)
13 COG0236 AcpP Acyl carrier prot 99.7 9.8E-18 2.1E-22 112.5 7.4 76 58-134 3-79 (80)
14 PRK09184 acyl carrier protein; 99.7 3.9E-17 8.5E-22 112.4 7.7 76 58-134 4-87 (89)
15 PRK07081 acyl carrier protein; 99.7 1.2E-16 2.7E-21 108.3 7.2 77 62-139 2-82 (83)
16 PRK00982 acpP acyl carrier pro 99.7 2.3E-16 4.9E-21 104.7 7.4 75 59-134 2-77 (78)
17 PF00550 PP-binding: Phosphopa 99.6 3.8E-15 8.2E-20 95.3 8.1 67 63-130 1-67 (67)
18 PRK05087 D-alanine--poly(phosp 99.6 4.1E-15 9E-20 100.0 7.3 73 60-133 2-77 (78)
19 PF14573 PP-binding_2: Acyl-ca 99.4 1.9E-12 4.1E-17 88.5 7.6 77 58-136 8-90 (96)
20 TIGR01688 dltC D-alanine--poly 99.4 1.7E-12 3.6E-17 86.4 5.7 68 63-131 2-72 (73)
21 smart00823 PKS_PP Phosphopante 98.9 1.5E-08 3.2E-13 65.1 8.7 75 59-133 11-85 (86)
22 TIGR02813 omega_3_PfaA polyket 98.8 8.6E-09 1.9E-13 103.0 7.4 77 57-134 1304-1383(2582)
23 PRK06060 acyl-CoA synthetase; 98.6 1.7E-07 3.7E-12 83.2 8.0 76 60-135 545-620 (705)
24 PRK10252 entF enterobactin syn 98.6 2.9E-07 6.2E-12 86.2 9.4 109 21-133 938-1048(1296)
25 TIGR03443 alpha_am_amid L-amin 98.6 3E-07 6.6E-12 87.0 9.4 112 21-134 799-921 (1389)
26 PRK12467 peptide synthase; Pro 98.5 6.9E-07 1.5E-11 92.3 9.8 108 21-132 3565-3674(3956)
27 PRK05691 peptide synthase; Val 98.3 2.3E-06 5E-11 89.0 9.7 109 21-133 4199-4311(4334)
28 PRK12467 peptide synthase; Pro 98.3 2.7E-06 5.8E-11 88.1 9.4 109 21-133 989-1100(3956)
29 PRK05691 peptide synthase; Val 98.3 3.6E-06 7.8E-11 87.6 9.5 110 21-134 1599-1709(4334)
30 PRK12316 peptide synthase; Pro 98.3 3.6E-06 7.8E-11 88.6 9.4 109 21-133 5031-5142(5163)
31 PRK12316 peptide synthase; Pro 98.2 4E-06 8.6E-11 88.3 9.3 110 21-134 2475-2587(5163)
32 COG3433 Aryl carrier domain [S 98.0 1.2E-05 2.6E-10 53.2 5.3 70 65-136 3-72 (74)
33 TIGR02813 omega_3_PfaA polyket 98.0 1E-05 2.2E-10 81.7 5.8 76 57-133 1208-1286(2582)
34 PF07377 DUF1493: Protein of u 97.4 0.00061 1.3E-08 48.3 5.9 59 59-117 2-64 (111)
35 KOG1202 Animal-type fatty acid 96.7 0.00094 2E-08 63.9 2.6 55 64-118 2008-2062(2376)
36 PF10501 Ribosomal_L50: Riboso 95.8 0.1 2.2E-06 36.9 8.4 75 57-132 5-81 (112)
37 TIGR02372 4_coum_CoA_lig 4-cou 95.3 0.079 1.7E-06 44.7 7.3 79 57-135 4-94 (386)
38 KOG2452 Formyltetrahydrofolate 93.6 0.17 3.7E-06 44.9 5.8 77 58-136 320-397 (881)
39 KOG1178 Non-ribosomal peptide 92.1 0.25 5.5E-06 47.1 5.0 110 21-133 550-668 (1032)
40 PF08766 DEK_C: DEK C terminal 84.2 1.7 3.6E-05 26.7 3.3 25 91-115 17-41 (54)
41 COG1905 NuoE NADH:ubiquinone o 58.0 5.2 0.00011 30.3 1.1 85 41-135 68-158 (160)
42 COG1669 Predicted nucleotidylt 54.8 70 0.0015 22.3 6.2 57 60-116 9-78 (97)
43 PF03471 CorC_HlyC: Transporte 49.6 23 0.0005 23.0 3.0 29 101-132 16-44 (81)
44 PLN00204 CP12 gene family prot 48.7 24 0.00052 25.7 3.2 23 51-73 47-69 (126)
45 smart00151 SWIB SWI complex, B 46.4 45 0.00097 21.7 4.0 57 52-108 16-75 (77)
46 PF00874 PRD: PRD domain; Int 46.4 22 0.00048 22.2 2.5 22 97-118 59-80 (89)
47 PF09346 SMI1_KNR4: SMI1 / KNR 34.1 28 0.00061 23.2 1.7 18 99-116 5-22 (130)
48 smart00860 SMI1_KNR4 SMI1 / KN 32.3 43 0.00093 21.6 2.3 18 99-116 5-22 (129)
49 PRK00157 rplL 50S ribosomal pr 31.1 47 0.001 24.1 2.4 20 93-112 16-35 (123)
50 PF08006 DUF1700: Protein of u 29.7 1.3E+02 0.0029 22.3 4.8 57 56-132 1-62 (181)
51 PF13592 HTH_33: Winged helix- 29.6 47 0.001 20.4 1.9 21 97-117 7-27 (60)
52 TIGR00855 L12 ribosomal protei 29.4 51 0.0011 24.0 2.4 21 92-112 16-36 (126)
53 smart00213 UBQ Ubiquitin homol 27.5 43 0.00093 19.7 1.5 20 58-77 18-37 (64)
54 KOG3196 NADH:ubiquinone oxidor 26.9 82 0.0018 25.0 3.2 81 49-137 114-196 (233)
55 PF14568 SUKH_6: SMI1-KNR4 cel 26.6 53 0.0012 21.9 2.0 17 99-115 2-18 (120)
56 PF06755 DUF1219: Protein of u 26.4 34 0.00073 24.5 1.0 28 50-77 10-38 (114)
57 COG0222 RplL Ribosomal protein 26.1 66 0.0014 23.4 2.4 18 95-112 18-35 (124)
58 cd01807 GDX_N ubiquitin-like d 25.7 39 0.00084 21.3 1.1 36 57-92 18-61 (74)
59 cd01798 parkin_N amino-termina 24.5 57 0.0012 20.3 1.7 36 57-92 16-59 (70)
60 PRK10696 tRNA 2-thiocytidine b 24.3 1.4E+02 0.003 23.6 4.2 45 60-110 11-58 (258)
61 PRK14611 4-diphosphocytidyl-2- 23.8 1E+02 0.0022 24.7 3.4 61 58-118 60-123 (275)
62 CHL00083 rpl12 ribosomal prote 23.2 77 0.0017 23.2 2.4 20 94-113 17-36 (131)
63 PF15325 MRI: Modulator of ret 22.2 64 0.0014 22.7 1.7 20 53-72 2-21 (106)
64 PRK03188 4-diphosphocytidyl-2- 20.9 1.2E+02 0.0027 24.3 3.4 60 59-118 64-126 (300)
65 PRK05988 formate dehydrogenase 20.8 1.3E+02 0.0027 22.4 3.2 45 40-87 65-115 (156)
66 PF00240 ubiquitin: Ubiquitin 20.7 50 0.0011 20.2 0.9 39 57-95 13-59 (69)
67 PRK07571 bidirectional hydroge 20.3 1.5E+02 0.0033 22.4 3.6 45 40-87 78-128 (169)
68 PF08861 DUF1828: Domain of un 20.0 2.5E+02 0.0054 18.5 4.3 42 94-135 44-85 (90)
No 1
>KOG1748 consensus Acyl carrier protein/NADH-ubiquinone oxidoreductase, NDUFAB1/SDAP subunit [Energy production and conversion; Lipid transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.87 E-value=2.6e-23 Score=151.14 Aligned_cols=82 Identities=52% Similarity=0.723 Sum_probs=78.4
Q ss_pred cCChHHHHHHHHHHHHHHhCCCCCCCCCCCCCcc-ccCCChHHHHHHHHHHHHHhCCccChhhhccCCCHHHHHHHHHHH
Q 032506 55 CAAKPETVDKVCQIVKKQLALPADTTVTGESKFA-ALGADSLDTVEIVMGLEEEFGISVEEESAQTISTVQDAADLIEKL 133 (139)
Q Consensus 55 ~~~~~ei~~~V~~Il~e~l~i~~~~~I~~dt~l~-dLGlDSLd~veLv~~LEeeFgI~i~~~~l~~~~TV~dl~~~I~~~ 133 (139)
|.+++++.++|..+++.+..++++ .++++++|. |||+||||.||++|+|||||||+||+++.+++.|++++++||+++
T Consensus 48 ~l~k~~v~~RVl~VVk~~dki~~~-k~~~~s~f~~DLGlDSLD~VEiVMAlEEEFgiEIpd~dAdki~t~~da~~yI~~~ 126 (131)
T KOG1748|consen 48 CLAKKEVVDRVLDVVKKFDKIDPS-KLTTDSDFFKDLGLDSLDTVEIVMALEEEFGIEIPDEDADKIKTVRDAADYIADK 126 (131)
T ss_pred hhhHHHHHHHHHHHHHHhhcCCcc-ccchhhHHHHhcCCcccccchhhhhhHHHhCCccCcchhhhhCCHHHHHHHHHhc
Confidence 899999999999999999999996 899999998 999999999999999999999999999999999999999999988
Q ss_pred Hhhh
Q 032506 134 IETK 137 (139)
Q Consensus 134 ~~~k 137 (139)
...+
T Consensus 127 ~d~k 130 (131)
T KOG1748|consen 127 PDVK 130 (131)
T ss_pred cccc
Confidence 7654
No 2
>PRK07117 acyl carrier protein; Validated
Probab=99.85 E-value=3.1e-21 Score=130.08 Aligned_cols=78 Identities=22% Similarity=0.309 Sum_probs=74.3
Q ss_pred CChHHHHHHHHHHHHHHh-CCCCCCCCCCCCCccccCCChHHHHHHHHHHHHHhCCccChhhhccCCCHHHHHHHHHHHH
Q 032506 56 AAKPETVDKVCQIVKKQL-ALPADTTVTGESKFAALGADSLDTVEIVMGLEEEFGISVEEESAQTISTVQDAADLIEKLI 134 (139)
Q Consensus 56 ~~~~ei~~~V~~Il~e~l-~i~~~~~I~~dt~l~dLGlDSLd~veLv~~LEeeFgI~i~~~~l~~~~TV~dl~~~I~~~~ 134 (139)
|++++++++|++++++++ +++++ +|+++++|.|||+|||+++++++.+|++|||+||++++.++.||+++++||.+++
T Consensus 1 M~~~ei~~~v~~ii~e~~p~i~~~-~I~~~~~l~DLg~DSlD~veiv~~led~f~i~I~~~~~~~i~Tv~d~v~~i~~~~ 79 (79)
T PRK07117 1 MDKQRIFDILVRHIREVLPDLDQH-QFQPEDSLVDLGANSMDRAEIVIMTLESLSLKIPLVEFAGAKNIGELADLLYAKL 79 (79)
T ss_pred CCHHHHHHHHHHHHHHHcCCCCHH-HCCCCCChhhcCCChHHHHHHHHHHHHHHCCccCHHHHHhcCCHHHHHHHHHHhC
Confidence 678999999999999999 69885 9999999999999999999999999999999999999999999999999998763
No 3
>PRK05828 acyl carrier protein; Validated
Probab=99.84 E-value=6.9e-21 Score=129.78 Aligned_cols=82 Identities=27% Similarity=0.375 Sum_probs=77.4
Q ss_pred CChHHHHHHHHHHHHH-HhCCCCCCCCCCCCCccccCCChHHHHHHHHHHHHHhCCccChhhhccCCCHHHHHHHHHHHH
Q 032506 56 AAKPETVDKVCQIVKK-QLALPADTTVTGESKFAALGADSLDTVEIVMGLEEEFGISVEEESAQTISTVQDAADLIEKLI 134 (139)
Q Consensus 56 ~~~~ei~~~V~~Il~e-~l~i~~~~~I~~dt~l~dLGlDSLd~veLv~~LEeeFgI~i~~~~l~~~~TV~dl~~~I~~~~ 134 (139)
|++++++++|++++++ .++++.+ .++++++|.|||+|||+++++++.||++|||+||++++.++.||+++++||.+++
T Consensus 1 m~~~eI~~~i~~ii~e~~~~~~~d-~i~~~~~~~dLg~DSLd~velv~~lE~~f~I~i~~e~~~~i~Tv~d~~~~v~~~~ 79 (84)
T PRK05828 1 MQEMEILLKIKEIAKKKNFAVTLD-ESNINKPYRELKIDSLDMFSIIVSLESEFNIEFSDEKLMKLKNLADLILEVKELK 79 (84)
T ss_pred CCHHHHHHHHHHHHHHhccCCCcc-cccCCCCHHhcCCCHHHHHHHHHHHHHHHCCCcCHHHHHhCCCHHHHHHHHHHHH
Confidence 7899999999999998 6888885 8999999999999999999999999999999999999999999999999999998
Q ss_pred hhhc
Q 032506 135 ETKS 138 (139)
Q Consensus 135 ~~k~ 138 (139)
++++
T Consensus 80 ~~~~ 83 (84)
T PRK05828 80 KQKG 83 (84)
T ss_pred hccC
Confidence 8775
No 4
>PRK05350 acyl carrier protein; Provisional
Probab=99.82 E-value=2.9e-20 Score=125.35 Aligned_cols=79 Identities=25% Similarity=0.482 Sum_probs=75.4
Q ss_pred CChHHHHHHHHHHHHHHhCCCCCCCCCCCCCcc-ccCCChHHHHHHHHHHHHHhCCccChhhhccCCCHHHHHHHHHHHH
Q 032506 56 AAKPETVDKVCQIVKKQLALPADTTVTGESKFA-ALGADSLDTVEIVMGLEEEFGISVEEESAQTISTVQDAADLIEKLI 134 (139)
Q Consensus 56 ~~~~ei~~~V~~Il~e~l~i~~~~~I~~dt~l~-dLGlDSLd~veLv~~LEeeFgI~i~~~~l~~~~TV~dl~~~I~~~~ 134 (139)
|+++++.++|++++++.++++++ .|+++++|. +|||||+++++|+++||++|||+|+++++..+.||+++++||.+++
T Consensus 2 m~~~~i~~~v~~ii~~~~~~~~~-~i~~d~~l~~dlg~DSld~veli~~lE~~fgI~i~~~~~~~~~Tv~dlv~~v~~~~ 80 (82)
T PRK05350 2 MTREEILERLRAILVELFEIDPE-DITPEANLYEDLDLDSIDAVDLVVHLQKLTGKKIKPEEFKSVRTVQDVVDAVERLL 80 (82)
T ss_pred CCHHHHHHHHHHHHHHHhCCCHH-HCCCCccchhhcCCCHHHHHHHHHHHHHHHCCccCHHHHhhcCcHHHHHHHHHHHh
Confidence 78899999999999999999985 999999985 9999999999999999999999999999999999999999999887
Q ss_pred h
Q 032506 135 E 135 (139)
Q Consensus 135 ~ 135 (139)
+
T Consensus 81 ~ 81 (82)
T PRK05350 81 K 81 (82)
T ss_pred c
Confidence 5
No 5
>CHL00124 acpP acyl carrier protein; Validated
Probab=99.81 E-value=6.7e-20 Score=123.06 Aligned_cols=81 Identities=44% Similarity=0.668 Sum_probs=76.9
Q ss_pred CChHHHHHHHHHHHHHHhCCCCCCCCCCCCCcc-ccCCChHHHHHHHHHHHHHhCCccChhhhccCCCHHHHHHHHHHHH
Q 032506 56 AAKPETVDKVCQIVKKQLALPADTTVTGESKFA-ALGADSLDTVEIVMGLEEEFGISVEEESAQTISTVQDAADLIEKLI 134 (139)
Q Consensus 56 ~~~~ei~~~V~~Il~e~l~i~~~~~I~~dt~l~-dLGlDSLd~veLv~~LEeeFgI~i~~~~l~~~~TV~dl~~~I~~~~ 134 (139)
|+++++.++|++++++.++++++ .++++++|. +|||||+++++|++.||++|||++|++++..+.|++++++||.+++
T Consensus 1 M~~~~i~~~l~~ii~~~~~~~~~-~i~~d~~l~~dlg~DSl~~~eli~~le~~f~i~i~~~~~~~~~tv~~l~~~i~~~~ 79 (82)
T CHL00124 1 MTKNDIFEKVQSIVAEQLGIEKS-EVTLDANFTRDLGADSLDVVELVMAIEEKFDIEIPDEDAEKISTLQEAVDFISQKI 79 (82)
T ss_pred CCHHHHHHHHHHHHHHHHCCCHH-HCCCCcchhhhcCCcHHHHHHHHHHHHHHHCCccCHHHHHHcCCHHHHHHHHHHHh
Confidence 78899999999999999999885 899999998 6999999999999999999999999999999999999999999988
Q ss_pred hhh
Q 032506 135 ETK 137 (139)
Q Consensus 135 ~~k 137 (139)
++|
T Consensus 80 ~~~ 82 (82)
T CHL00124 80 NKK 82 (82)
T ss_pred ccC
Confidence 764
No 6
>PRK05883 acyl carrier protein; Validated
Probab=99.81 E-value=1.3e-19 Score=124.99 Aligned_cols=80 Identities=20% Similarity=0.336 Sum_probs=75.7
Q ss_pred cCChHHHHHHHHHHHHHHhCCCCCCCCCCCCCcc-ccCCChHHHHHHHHHHHHHhCCccChhhhccCCCHHHHHHHHHHH
Q 032506 55 CAAKPETVDKVCQIVKKQLALPADTTVTGESKFA-ALGADSLDTVEIVMGLEEEFGISVEEESAQTISTVQDAADLIEKL 133 (139)
Q Consensus 55 ~~~~~ei~~~V~~Il~e~l~i~~~~~I~~dt~l~-dLGlDSLd~veLv~~LEeeFgI~i~~~~l~~~~TV~dl~~~I~~~ 133 (139)
++++.++.++|+++|++.++++++ .|+++++|. +||||||+++++++.||++|||+|+++++.++.||+++++||.++
T Consensus 9 ~~~~~~I~~~l~~iia~~l~v~~~-~I~~d~~l~~dlg~DSL~~v~lv~~lE~~fgI~i~~ee~~~~~TV~dl~~~v~~~ 87 (91)
T PRK05883 9 TSSPSTVSATLLSILRDDLNVDLT-RVTPDARLVDDVGLDSVAFAVGMVAIEERLGVALSEEDLLSCDTVGDLEAAIAAK 87 (91)
T ss_pred CCCHHHHHHHHHHHHHHHhCCChh-hCCCCCchhhccCCChHHHHHHHHHHHHHHCCCcCHHHHHhCCCHHHHHHHHHHH
Confidence 567889999999999999999986 999999996 999999999999999999999999999999999999999999987
Q ss_pred Hh
Q 032506 134 IE 135 (139)
Q Consensus 134 ~~ 135 (139)
+.
T Consensus 88 ~~ 89 (91)
T PRK05883 88 VR 89 (91)
T ss_pred cc
Confidence 64
No 7
>PTZ00171 acyl carrier protein; Provisional
Probab=99.80 E-value=1.7e-19 Score=134.60 Aligned_cols=88 Identities=36% Similarity=0.539 Sum_probs=82.8
Q ss_pred cccccccCChHHHHHHHHHHHHHHhCCCCCCCCCCCCCcc-ccCCChHHHHHHHHHHHHHhCCccChhhhccCCCHHHHH
Q 032506 49 PRFRVSCAAKPETVDKVCQIVKKQLALPADTTVTGESKFA-ALGADSLDTVEIVMGLEEEFGISVEEESAQTISTVQDAA 127 (139)
Q Consensus 49 ~r~~~~~~~~~ei~~~V~~Il~e~l~i~~~~~I~~dt~l~-dLGlDSLd~veLv~~LEeeFgI~i~~~~l~~~~TV~dl~ 127 (139)
.|-+.+.|+++++.++|++++++.++++++ .|+++++|. |||||||+++||+++||++|||+||++++.++.||++++
T Consensus 59 ~~~~~~~~~~~~v~~~l~eiiae~l~vd~~-~I~~ds~~~~dLg~DSLd~veLv~~LEdeFgI~Ipded~~~i~TV~dlv 137 (148)
T PTZ00171 59 SKSKQYLLSKEDVLTRVKKVVKNFEKVDAS-KITPESNFVKDLGADSLDVVELLIAIEQEFNLTIPDHDAEKIKTVQDAI 137 (148)
T ss_pred hcccccccCHHHHHHHHHHHHHHHhCCCHh-hCCCCcchhhhcCCCHHHHHHHHHHHHHHHCCccCHHHHHHCCCHHHHH
Confidence 456788999999999999999999999986 999999997 999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhh
Q 032506 128 DLIEKLIETK 137 (139)
Q Consensus 128 ~~I~~~~~~k 137 (139)
+||.++.+.|
T Consensus 138 d~V~~~~~~~ 147 (148)
T PTZ00171 138 DYIEQNNMAK 147 (148)
T ss_pred HHHHHHHhcc
Confidence 9999988765
No 8
>PRK07639 acyl carrier protein; Provisional
Probab=99.80 E-value=2.3e-19 Score=122.61 Aligned_cols=82 Identities=20% Similarity=0.295 Sum_probs=75.1
Q ss_pred CChHHHHHHHHHHHHHHhCCCCCCCCCCCCCcc-ccCCChHHHHHHHHHHHHHhCCccChhhh--ccCCCHHHHHHHHHH
Q 032506 56 AAKPETVDKVCQIVKKQLALPADTTVTGESKFA-ALGADSLDTVEIVMGLEEEFGISVEEESA--QTISTVQDAADLIEK 132 (139)
Q Consensus 56 ~~~~ei~~~V~~Il~e~l~i~~~~~I~~dt~l~-dLGlDSLd~veLv~~LEeeFgI~i~~~~l--~~~~TV~dl~~~I~~ 132 (139)
|++++++++|+++|++++++++..+++++++|. +||+||+++++|+++||++|||+||++++ .++.||+++++||.+
T Consensus 1 M~~~ei~~~i~~il~e~l~~~~~~~i~~d~~l~edL~lDSld~velv~~lE~~fgi~i~d~~~~~~~~~Tv~~l~~~i~~ 80 (86)
T PRK07639 1 MRREALKNAVLKIMEEKLELKNVTHLEETMRLNEDLYIDSVMMLQLIVYIEMDVKLCVPEDEVDPKAFLTVGSLLDFMEE 80 (86)
T ss_pred CCHHHHHHHHHHHHHHHhCCCccccCCCCCCcccccCCChHHHHHHHHHHHHHHCCccCHHHccHHHhCCHHHHHHHHHH
Confidence 788999999999999999987623899999997 89999999999999999999999999987 589999999999999
Q ss_pred HHhhh
Q 032506 133 LIETK 137 (139)
Q Consensus 133 ~~~~k 137 (139)
+.++.
T Consensus 81 ~~~~~ 85 (86)
T PRK07639 81 LQPLQ 85 (86)
T ss_pred hhccc
Confidence 87543
No 9
>PRK08172 putative acyl carrier protein IacP; Validated
Probab=99.80 E-value=1.5e-19 Score=122.60 Aligned_cols=76 Identities=32% Similarity=0.571 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCCCCCcc-ccCCChHHHHHHHHHHHHHhCCccChhhhccCCCHHHHHHHHHHHHhh
Q 032506 60 ETVDKVCQIVKKQLALPADTTVTGESKFA-ALGADSLDTVEIVMGLEEEFGISVEEESAQTISTVQDAADLIEKLIET 136 (139)
Q Consensus 60 ei~~~V~~Il~e~l~i~~~~~I~~dt~l~-dLGlDSLd~veLv~~LEeeFgI~i~~~~l~~~~TV~dl~~~I~~~~~~ 136 (139)
++.++++++++++++++++ .|+++++|. +||||||++++|++.||++|||+||++++.++.||+++++||.++++.
T Consensus 4 ~i~~~v~~iiae~l~v~~~-~i~~d~~l~~dL~~DSld~v~lv~~lEe~F~I~i~~~d~~~i~Tv~di~~~v~~~~~~ 80 (82)
T PRK08172 4 DIEARVKKVITSCIAVDVD-SINGQTHLVEDLYADSLDLIDIVFGLSEEFDISCNENDLPDMTTFADICRVVKKSLES 80 (82)
T ss_pred cHHHHHHHHHHHHHCCCHH-HCCCCcchhhhcCCCHHHHHHHHHHHHHHHCCCcCHHHHHHCCCHHHHHHHHHHHHhc
Confidence 7999999999999999996 999999996 999999999999999999999999999999999999999999998764
No 10
>PRK12449 acyl carrier protein; Provisional
Probab=99.80 E-value=2.9e-19 Score=119.43 Aligned_cols=78 Identities=21% Similarity=0.456 Sum_probs=74.1
Q ss_pred CChHHHHHHHHHHHHHHhCCCCCCCCCCCCCcc-ccCCChHHHHHHHHHHHHHhCCccChhhhccCCCHHHHHHHHHHHH
Q 032506 56 AAKPETVDKVCQIVKKQLALPADTTVTGESKFA-ALGADSLDTVEIVMGLEEEFGISVEEESAQTISTVQDAADLIEKLI 134 (139)
Q Consensus 56 ~~~~ei~~~V~~Il~e~l~i~~~~~I~~dt~l~-dLGlDSLd~veLv~~LEeeFgI~i~~~~l~~~~TV~dl~~~I~~~~ 134 (139)
|+++++.++|++++++.++.++. .+++++.|. +|||||+++++|++++|++|||++|++++.++.||+++++||.+++
T Consensus 1 m~~~~i~~~l~~il~~~~~~~~~-~i~~~~~l~~dlg~DSl~~~~li~~lE~~f~i~i~~~~~~~~~ti~~l~~~l~~~~ 79 (80)
T PRK12449 1 MTREEIFERLINLIQKQRSYLSL-AITEQTHLKDDLAVDSIELVEFIINVEDEFHIAIPDEDVEDMVSMGDLLDYLVQRL 79 (80)
T ss_pred CCHHHHHHHHHHHHHHHhCCCcc-ccCCCCcHHHHcCCcHHHHHHHHHHHHHHhCCCCCHHHHHhCCCHHHHHHHHHHhc
Confidence 67899999999999999999885 899999996 9999999999999999999999999999999999999999998764
No 11
>TIGR00517 acyl_carrier acyl carrier protein. S (Ser) at position 37 in the seed alignment, in the motif DSLD, is the phosphopantetheine attachment site.
Probab=99.75 E-value=4.7e-18 Score=112.79 Aligned_cols=74 Identities=53% Similarity=0.739 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCCCCCCcc-ccCCChHHHHHHHHHHHHHhCCccChhhhccCCCHHHHHHHHHHH
Q 032506 59 PETVDKVCQIVKKQLALPADTTVTGESKFA-ALGADSLDTVEIVMGLEEEFGISVEEESAQTISTVQDAADLIEKL 133 (139)
Q Consensus 59 ~ei~~~V~~Il~e~l~i~~~~~I~~dt~l~-dLGlDSLd~veLv~~LEeeFgI~i~~~~l~~~~TV~dl~~~I~~~ 133 (139)
+++.++|++++++.++++++ +++++++|. +|||||+++++|++.||++|||++|++++.++.||+++++||.++
T Consensus 2 ~~i~~~l~~il~~~~~~~~~-~i~~~~~l~~dlglDSl~~veli~~lE~~f~i~i~~~~~~~~~tv~~l~~~i~~~ 76 (77)
T TIGR00517 2 QEIFEKVKAIIKEQLNVDED-QVTPDASFVEDLGADSLDTVELVMALEEEFDIEIPDEEAEKIATVGDAVDYIEEN 76 (77)
T ss_pred hHHHHHHHHHHHHHHCCCHH-HCCCCcchhhhcCCcHHHHHHHHHHHHHHHCCCCCHHHHHHCCcHHHHHHHHHhc
Confidence 57899999999999999885 899999996 899999999999999999999999999999999999999999864
No 12
>PRK06508 acyl carrier protein; Provisional
Probab=99.74 E-value=5.2e-18 Score=117.64 Aligned_cols=80 Identities=34% Similarity=0.530 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCCCCCCcc-ccCCChHHHHHHHHHHHHHhCCccChhhhc-----------cCCCHHHH
Q 032506 59 PETVDKVCQIVKKQLALPADTTVTGESKFA-ALGADSLDTVEIVMGLEEEFGISVEEESAQ-----------TISTVQDA 126 (139)
Q Consensus 59 ~ei~~~V~~Il~e~l~i~~~~~I~~dt~l~-dLGlDSLd~veLv~~LEeeFgI~i~~~~l~-----------~~~TV~dl 126 (139)
..++++|++++++.++++++ .|++++.|. +||||||++++|++.||++|||+||++++. ++.|++++
T Consensus 2 ~~i~ekv~~Ilae~~~vd~~-~It~ds~~~edL~~DSLd~veli~~lE~eFgI~i~~ee~~~~~n~~~~~~~~~~~l~~~ 80 (93)
T PRK06508 2 SSTFDKVADIIAETSDIPRD-TITPESHTIDDLGIDSLDFLDIVFAIDKAFGIKLPLEQWTQEVNEGKVPTEEYFVLKNL 80 (93)
T ss_pred hHHHHHHHHHHHHHhCCCHH-HCCCCCcchhccCCCHHHHHHHHHHHHHHHCCccCHHHHHHhhcccccccchHHHHHHH
Confidence 36899999999999999985 999999986 999999999999999999999999999975 45588999
Q ss_pred HHHHHHHHhhhcC
Q 032506 127 ADLIEKLIETKSA 139 (139)
Q Consensus 127 ~~~I~~~~~~k~a 139 (139)
+.+|.+++++|+|
T Consensus 81 ~~~i~~~~~~~~~ 93 (93)
T PRK06508 81 CAKIDELVAAKAA 93 (93)
T ss_pred HHHHHHHHHhhcC
Confidence 9999999999876
No 13
>COG0236 AcpP Acyl carrier protein [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.73 E-value=9.8e-18 Score=112.50 Aligned_cols=76 Identities=43% Similarity=0.679 Sum_probs=71.1
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCCCCCCCcc-ccCCChHHHHHHHHHHHHHhCCccChhhhccCCCHHHHHHHHHHHH
Q 032506 58 KPETVDKVCQIVKKQLALPADTTVTGESKFA-ALGADSLDTVEIVMGLEEEFGISVEEESAQTISTVQDAADLIEKLI 134 (139)
Q Consensus 58 ~~ei~~~V~~Il~e~l~i~~~~~I~~dt~l~-dLGlDSLd~veLv~~LEeeFgI~i~~~~l~~~~TV~dl~~~I~~~~ 134 (139)
.+.+.++|++++.+.++.++. ++++++.|. |||+|||++++|++.||++|||++|++++.++.||+++++||.++.
T Consensus 3 ~~~~~~~i~~ii~e~l~~~~~-~i~~~~~~~~dlg~DSld~veLi~~lE~~f~i~i~~e~~~~~~tv~~l~~~i~~~~ 79 (80)
T COG0236 3 MEAIEERVKDIIAEQLGVDEE-EITTEASFVEDLGLDSLDLVELVMALEEEFGIEIPDEELENIKTVGDLVDYIEELL 79 (80)
T ss_pred hHHHHHHHHHHHHHHhCCchh-hcCcccccccccCccHHHHHHHHHHHHHHHCCcCCHHHHHHHHhHHHHHHHHHHhc
Confidence 456999999999999999964 899999998 7999999999999999999999999999999999999999998764
No 14
>PRK09184 acyl carrier protein; Provisional
Probab=99.71 E-value=3.9e-17 Score=112.37 Aligned_cols=76 Identities=14% Similarity=0.403 Sum_probs=67.3
Q ss_pred hHHHHHHHHHHHHHHhCC---CCCCCCCCCCCc-c-ccCCChHHHHHHHHHHHHHhCCccChhh---hccCCCHHHHHHH
Q 032506 58 KPETVDKVCQIVKKQLAL---PADTTVTGESKF-A-ALGADSLDTVEIVMGLEEEFGISVEEES---AQTISTVQDAADL 129 (139)
Q Consensus 58 ~~ei~~~V~~Il~e~l~i---~~~~~I~~dt~l-~-dLGlDSLd~veLv~~LEeeFgI~i~~~~---l~~~~TV~dl~~~ 129 (139)
-++++++|+++|.+.+++ +++ +|+++++| . +||+||+++++|++.+|++|||+|++++ +..+.||+++++|
T Consensus 4 ~~~l~~~l~~~I~e~l~~~~i~~~-~I~~d~~l~~~dLglDSld~velv~~lE~~fgi~i~~~~~~~~~~~~TV~~l~~~ 82 (89)
T PRK09184 4 MTALERELAELIVEELNLEDVQPE-SIDADAPLYGEGLGLDSIDILEIALVISKRYGFQLRSDNPDNQRIFASLRALAAY 82 (89)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCHH-HCCCCcccccccCCCcHHHHHHHHHHHHHHHCCcCCCcchhhhhccCCHHHHHHH
Confidence 357999999999999985 665 99999998 3 7999999999999999999999998665 4468999999999
Q ss_pred HHHHH
Q 032506 130 IEKLI 134 (139)
Q Consensus 130 I~~~~ 134 (139)
|.++.
T Consensus 83 I~~~~ 87 (89)
T PRK09184 83 VAAHR 87 (89)
T ss_pred HHHhh
Confidence 98864
No 15
>PRK07081 acyl carrier protein; Provisional
Probab=99.68 E-value=1.2e-16 Score=108.29 Aligned_cols=77 Identities=22% Similarity=0.465 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHhCC--CCCCCCCCCCCccccCCChHHHHHHHHHHHHHhCCccChhhhc--cCCCHHHHHHHHHHHHhhh
Q 032506 62 VDKVCQIVKKQLAL--PADTTVTGESKFAALGADSLDTVEIVMGLEEEFGISVEEESAQ--TISTVQDAADLIEKLIETK 137 (139)
Q Consensus 62 ~~~V~~Il~e~l~i--~~~~~I~~dt~l~dLGlDSLd~veLv~~LEeeFgI~i~~~~l~--~~~TV~dl~~~I~~~~~~k 137 (139)
.++|+++|.+.++. +++ .++++++|.+||+||+++++|++.||++|||+||++++. ++.||++++++|.++++++
T Consensus 2 ~~~i~~ii~~~~~~~~~~~-~i~~d~~l~dlGlDSl~~v~li~~lE~~f~I~i~~~~~~~~~~~tv~~l~~~V~~~~~~~ 80 (83)
T PRK07081 2 KNTIRTILKKVAKLEVPID-SIADDADLYEAGLSSLATVQLMLAIEDAFDIEIPDEMLNRKLFASIDALAGAVTQLQDAE 80 (83)
T ss_pred hHHHHHHHHHHHcCCCCHH-hcCCCCCHhhcCCCHHHHHHHHHHHHHHhCCcCCHHHcCHHHhccHHHHHHHHHHHHhhh
Confidence 57899999998554 443 899999999999999999999999999999999999985 5999999999999998876
Q ss_pred cC
Q 032506 138 SA 139 (139)
Q Consensus 138 ~a 139 (139)
++
T Consensus 81 ~~ 82 (83)
T PRK07081 81 KS 82 (83)
T ss_pred cc
Confidence 53
No 16
>PRK00982 acpP acyl carrier protein; Provisional
Probab=99.67 E-value=2.3e-16 Score=104.72 Aligned_cols=75 Identities=53% Similarity=0.745 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCCCCCCc-cccCCChHHHHHHHHHHHHHhCCccChhhhccCCCHHHHHHHHHHHH
Q 032506 59 PETVDKVCQIVKKQLALPADTTVTGESKF-AALGADSLDTVEIVMGLEEEFGISVEEESAQTISTVQDAADLIEKLI 134 (139)
Q Consensus 59 ~ei~~~V~~Il~e~l~i~~~~~I~~dt~l-~dLGlDSLd~veLv~~LEeeFgI~i~~~~l~~~~TV~dl~~~I~~~~ 134 (139)
.++.++|++++++.++++++ .++++++| .++|+||++.++|+..+|++||+++|++++.++.|+++++++|.++.
T Consensus 2 ~~i~~~l~~~l~~~l~~~~~-~i~~d~~l~~dlglDSl~~~~li~~le~~f~i~i~~~~~~~~~ti~~l~~~l~~~~ 77 (78)
T PRK00982 2 SEIFEKVKKIIVEQLGVDEE-EVTPEASFVDDLGADSLDTVELVMALEEEFGIEIPDEDAEKIKTVGDAVDYIEKHQ 77 (78)
T ss_pred hHHHHHHHHHHHHHHCCCHH-HCCCCcchHhhcCCCHHHHHHHHHHHHHHHCCCcCHHHHHHcCcHHHHHHHHHHhc
Confidence 36889999999999999875 89999999 59999999999999999999999999999999999999999997653
No 17
>PF00550 PP-binding: Phosphopantetheine attachment site; InterPro: IPR006163 Phosphopantetheine (or pantetheine 4' phosphate) is the prosthetic group of acyl carrier proteins (ACP) in some multienzyme complexes where it serves as a 'swinging arm' for the attachment of activated fatty acid and amino-acid groups []. The amino-terminal region of the ACP proteins is well defined and consists of alpha four helices arranged in a right-handed bundle held together by interhelical hydrophobic interactions. The Asp-Ser-Leu (DSL)motif is conserved in all of the ACP sequences, and the 4'-PP prosthetic group is covalently linked via a phosphodiester bond to the serine residue. The DSL sequence is present at the amino terminus of helix II, a domain of the protein referred to as the recognition helix and which is responsible for the interaction of ACPs with the enzymes of type II fatty acid synthesis [].; GO: 0048037 cofactor binding; PDB: 3EJB_E 3EJE_G 1L0I_A 2FHS_C 3EJD_E 2FAE_B 2FAD_B 2FAC_B 2K94_A 1ACP_A ....
Probab=99.61 E-value=3.8e-15 Score=95.32 Aligned_cols=67 Identities=33% Similarity=0.581 Sum_probs=63.6
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCCCccccCCChHHHHHHHHHHHHHhCCccChhhhccCCCHHHHHHHH
Q 032506 63 DKVCQIVKKQLALPADTTVTGESKFAALGADSLDTVEIVMGLEEEFGISVEEESAQTISTVQDAADLI 130 (139)
Q Consensus 63 ~~V~~Il~e~l~i~~~~~I~~dt~l~dLGlDSLd~veLv~~LEeeFgI~i~~~~l~~~~TV~dl~~~I 130 (139)
++|++++++.++++++ +++++++|.++|+||+..++++..||++||++++..++.+..|++++++||
T Consensus 1 e~l~~~~~~~l~~~~~-~i~~~~~~~~lG~DSl~~~~l~~~l~~~~g~~i~~~~~~~~~ti~~l~~~i 67 (67)
T PF00550_consen 1 EQLREIIAEVLGVDPE-EIDPDTDFFDLGLDSLDAIELVSELEEEFGIKIPPSDLFEHPTIRDLAEYI 67 (67)
T ss_dssp HHHHHHHHHHHTSSGG-CTSTTSBTTTTTSSHHHHHHHHHHHHHHHTSSTTHHHHCTSSSHHHHHHHH
T ss_pred CHHHHHHHHHHCcCHh-hCCCCCCHHHhCCchHHHHHHHHHHHHHHcCCCCHHHHHcCCCHHHHHhHC
Confidence 5789999999998875 999999999999999999999999999999999999999999999999986
No 18
>PRK05087 D-alanine--poly(phosphoribitol) ligase subunit 2; Validated
Probab=99.59 E-value=4.1e-15 Score=99.97 Aligned_cols=73 Identities=22% Similarity=0.277 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCCCCCccccC-CChHHHHHHHHHHHHHhCCccChhhhcc--CCCHHHHHHHHHHH
Q 032506 60 ETVDKVCQIVKKQLALPADTTVTGESKFAALG-ADSLDTVEIVMGLEEEFGISVEEESAQT--ISTVQDAADLIEKL 133 (139)
Q Consensus 60 ei~~~V~~Il~e~l~i~~~~~I~~dt~l~dLG-lDSLd~veLv~~LEeeFgI~i~~~~l~~--~~TV~dl~~~I~~~ 133 (139)
++.++|+++|.+.++.+.. +++++++|.+.| +||+++++|++.||++|||+||++++.. +.||+++++||.++
T Consensus 2 ~i~~~I~~iL~~~~~~~~~-~~~~d~~l~~~g~lDSl~~veli~~lE~~fgi~i~~~e~~~~~f~Tv~~i~~~v~~l 77 (78)
T PRK05087 2 DFKEQVLDILEELTGEDIV-SENMDEDLFEEGILDSMGTVELLVELENRFDIEVPVSEFDRDDWNTPNKIIAKVEEL 77 (78)
T ss_pred cHHHHHHHHHHHHhCCChh-ccCCccchhhccCcchHHHHHHHHHHHHHhCCccChHhcCHHhhcCHHHHHHHHHHc
Confidence 5789999999999888764 789999998554 8999999999999999999999999864 99999999999875
No 19
>PF14573 PP-binding_2: Acyl-carrier; PDB: 3CE7_A.
Probab=99.38 E-value=1.9e-12 Score=88.54 Aligned_cols=77 Identities=34% Similarity=0.462 Sum_probs=54.7
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCCCCCCCcc------ccCCChHHHHHHHHHHHHHhCCccChhhhccCCCHHHHHHHHH
Q 032506 58 KPETVDKVCQIVKKQLALPADTTVTGESKFA------ALGADSLDTVEIVMGLEEEFGISVEEESAQTISTVQDAADLIE 131 (139)
Q Consensus 58 ~~ei~~~V~~Il~e~l~i~~~~~I~~dt~l~------dLGlDSLd~veLv~~LEeeFgI~i~~~~l~~~~TV~dl~~~I~ 131 (139)
-+.+.++|..++++++.-.. ++++.++|. ++-|||||.||+++.+|++|+|.||++.+.+++|++++++||.
T Consensus 8 ~nav~~~i~g~~kkyl~~~~--~it~~skL~e~rt~e~r~wD~LDtVefvldVEe~F~V~IpDE~aDN~~tvqeIadfvv 85 (96)
T PF14573_consen 8 INAVTEYILGMLKKYLSEGE--EITYTSKLEESRTKEDRAWDSLDTVEFVLDVEEEFDVTIPDETADNIKTVQEIADFVV 85 (96)
T ss_dssp HHHHHHHHHHHHHTTB-TT------TTS-GGGSBBTTSSB--HHHHHHHHHHHHHHHT----HHHHTT--SHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCC--ccChhhhhHHhccccccccchhhhHHHHHhHHHHcCcccCccccchhhHHHHHHHHHH
Confidence 35678899999999886554 688888773 5779999999999999999999999999999999999999998
Q ss_pred HHHhh
Q 032506 132 KLIET 136 (139)
Q Consensus 132 ~~~~~ 136 (139)
++-+.
T Consensus 86 ~~r~~ 90 (96)
T PF14573_consen 86 QERQS 90 (96)
T ss_dssp HHHHS
T ss_pred HHHHh
Confidence 77654
No 20
>TIGR01688 dltC D-alanine--poly(phosphoribitol) ligase, subunit 2. This protein is part of the teichoic acid operon in gram-positive organisms. Gram positive organisms incorporate teichoic acid in their cell walls, and in the fatty acid residues of the glycolipid component of the outer layer of the cytoplasmic membrane. This gene, dltC, encodes the alanyl carrier protein.
Probab=99.35 E-value=1.7e-12 Score=86.38 Aligned_cols=68 Identities=18% Similarity=0.239 Sum_probs=60.2
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCCCccccCC-ChHHHHHHHHHHHHHhCCccChhhh--ccCCCHHHHHHHHH
Q 032506 63 DKVCQIVKKQLALPADTTVTGESKFAALGA-DSLDTVEIVMGLEEEFGISVEEESA--QTISTVQDAADLIE 131 (139)
Q Consensus 63 ~~V~~Il~e~l~i~~~~~I~~dt~l~dLGl-DSLd~veLv~~LEeeFgI~i~~~~l--~~~~TV~dl~~~I~ 131 (139)
++|++|+.+..+.+.. ...++++|.+.|+ ||+++|+|+.+||++|||++|++++ .++.|++.++++|+
T Consensus 2 e~i~eIL~~i~~~~~~-~~~~d~~L~~~GllDS~~~v~Li~~lE~ef~I~i~~~el~~enf~S~~~i~~~v~ 72 (73)
T TIGR01688 2 NGVLDILAEVTGSDDV-KENPDLELFEEGLLDSFGTVQLLLEIQNQFDIDVPISEFDRDEWDTPNKIVAKLE 72 (73)
T ss_pred hHHHHHHHHHhcCccc-ccCccHHHHHccchhHHHHHHHHHHHHHHhCCccCHHHcCHHHhcCHHHHHHHHh
Confidence 5788999998776542 5688999999996 9999999999999999999999997 48999999999986
No 21
>smart00823 PKS_PP Phosphopantetheine attachment site. Phosphopantetheine (or pantetheine 4' phosphate) is the prosthetic group of acyl carrier proteins (ACP) in some multienzyme complexes where it serves as a 'swinging arm' for the attachment of activated fatty acid and amino-acid groups PUBMED:5321311.
Probab=98.91 E-value=1.5e-08 Score=65.07 Aligned_cols=75 Identities=24% Similarity=0.238 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCCCCCCccccCCChHHHHHHHHHHHHHhCCccChhhhccCCCHHHHHHHHHHH
Q 032506 59 PETVDKVCQIVKKQLALPADTTVTGESKFAALGADSLDTVEIVMGLEEEFGISVEEESAQTISTVQDAADLIEKL 133 (139)
Q Consensus 59 ~ei~~~V~~Il~e~l~i~~~~~I~~dt~l~dLGlDSLd~veLv~~LEeeFgI~i~~~~l~~~~TV~dl~~~I~~~ 133 (139)
..+.+.+...+...++......++.+.+|.++|+||+..+++...++++||++++..++....|+..+++++.++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~dSl~~~~~~~~l~~~~~~~i~~~~~~~~~t~~~l~~~i~~~ 85 (86)
T smart00823 11 RLLLDLVREQVAAVLGHAAAEAIDPDRPFRDLGLDSLTAVELRNRLEAATGLRLPATLVFDHPTPAALAEHLAAE 85 (86)
T ss_pred HHHHHHHHHHHHHHHCCCccccCCCCCCHHHcCchHHHHHHHHHHHHHHHCCCCChHHHHcCCCHHHHHHHHHHh
Confidence 346778888888888877642358899999999999999999999999999999999998999999999998764
No 22
>TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA. Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD.
Probab=98.81 E-value=8.6e-09 Score=102.98 Aligned_cols=77 Identities=16% Similarity=0.269 Sum_probs=72.1
Q ss_pred ChHHHHHHHHHHHHHHhCCCCCCCCCCCCCcc-ccCCChHHHHHHHHHHHHHhC--CccChhhhccCCCHHHHHHHHHHH
Q 032506 57 AKPETVDKVCQIVKKQLALPADTTVTGESKFA-ALGADSLDTVEIVMGLEEEFG--ISVEEESAQTISTVQDAADLIEKL 133 (139)
Q Consensus 57 ~~~ei~~~V~~Il~e~l~i~~~~~I~~dt~l~-dLGlDSLd~veLv~~LEeeFg--I~i~~~~l~~~~TV~dl~~~I~~~ 133 (139)
+..++.++|.+++++.++++.+ .++++.+|. |||+||++.+||++.+|++|+ .+++++++.+++|++++++||...
T Consensus 1304 ~~~~v~~~vl~vvae~tgyp~e-~L~~d~~le~DLGiDSI~~vEil~~le~~f~~~~~i~~e~l~~l~Tl~div~~i~~~ 1382 (2582)
T TIGR02813 1304 DLIQIQNVMLEVVADKTGYPTE-MLELEMDMEADLGIDSIKRVEILGTVQDTLPDLPELSPEDLAECRTLGEIVSYMQSK 1382 (2582)
T ss_pred cHHHHHHHHHHHHHHHhCCCHH-HcCcccCchhhcCCCHHHHHHHHHHHHHhcCCcCCCChhHhhhcccHHHHHHHHhhc
Confidence 3468999999999999999986 999999998 999999999999999999999 899999999999999999999875
Q ss_pred H
Q 032506 134 I 134 (139)
Q Consensus 134 ~ 134 (139)
.
T Consensus 1383 ~ 1383 (2582)
T TIGR02813 1383 V 1383 (2582)
T ss_pred c
Confidence 5
No 23
>PRK06060 acyl-CoA synthetase; Validated
Probab=98.58 E-value=1.7e-07 Score=83.18 Aligned_cols=76 Identities=26% Similarity=0.335 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCCCCCccccCCChHHHHHHHHHHHHHhCCccChhhhccCCCHHHHHHHHHHHHh
Q 032506 60 ETVDKVCQIVKKQLALPADTTVTGESKFAALGADSLDTVEIVMGLEEEFGISVEEESAQTISTVQDAADLIEKLIE 135 (139)
Q Consensus 60 ei~~~V~~Il~e~l~i~~~~~I~~dt~l~dLGlDSLd~veLv~~LEeeFgI~i~~~~l~~~~TV~dl~~~I~~~~~ 135 (139)
.+.+.|++.+++.++.+....|+++.+|.+||+|||..+++...|++.||+++|...+.+..|+.+++++|.+.+.
T Consensus 545 ~~~~~v~~~~a~vl~~~~~~~i~~~~~f~~lG~dSl~av~l~~~l~~~~g~~l~~~~~~~~pt~~~la~~l~~~~~ 620 (705)
T PRK06060 545 LVVDAVCAEAAKMLGEPDPWSVDQDLAFSELGFDSQMTVTLCKRLAAVTGLRLPETVGWDYGSISGLAQYLEAELA 620 (705)
T ss_pred HHHHHHHHHHHHHhCCCChhhCCCCCChhhcCchHHHHHHHHHHHHHHhCCCCCceeeecCCCHHHHHHHHHHHhc
Confidence 3556788899999998643479999999999999999999999999999999999999999999999999988764
No 24
>PRK10252 entF enterobactin synthase subunit F; Provisional
Probab=98.57 E-value=2.9e-07 Score=86.18 Aligned_cols=109 Identities=23% Similarity=0.233 Sum_probs=86.4
Q ss_pred ccceeecccceeeccCCCCC-CccccccC-cccccccCChHHHHHHHHHHHHHHhCCCCCCCCCCCCCccccCCChHHHH
Q 032506 21 TQGRISSVNSVSLSINGKSF-PSLRMRSA-PRFRVSCAAKPETVDKVCQIVKKQLALPADTTVTGESKFAALGADSLDTV 98 (139)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~r~~~~~~~~~ei~~~V~~Il~e~l~i~~~~~I~~dt~l~dLGlDSLd~v 98 (139)
.|..+..++.++.+.+||.. ..++ +|. ...........++.+.+.+++++.++++ .+..+++|+++|.|||..+
T Consensus 938 ~P~~~~~~~~lP~t~~GKidr~~L~-~~~~~~~~~~~~~~~~~e~~l~~~~~~~l~~~---~~~~~~~ff~lGg~Sl~a~ 1013 (1296)
T PRK10252 938 VPVVLLQLDQLPLSANGKLDRKALP-LPELKAQVPGRAPKTGTETIIAAAFSSLLGCD---VVDADADFFALGGHSLLAM 1013 (1296)
T ss_pred CCcEEEEecCCCCCCCcChhHHhcC-CCcccccccCCCCCCHHHHHHHHHHHHHhCCC---CCCCCcCHHHcCCChHHHH
Confidence 46667777788888777652 2222 111 1111233456688899999999999986 5889999999999999999
Q ss_pred HHHHHHHHHhCCccChhhhccCCCHHHHHHHHHHH
Q 032506 99 EIVMGLEEEFGISVEEESAQTISTVQDAADLIEKL 133 (139)
Q Consensus 99 eLv~~LEeeFgI~i~~~~l~~~~TV~dl~~~I~~~ 133 (139)
+|+..|++.||++++..++....|+.+++++|.+.
T Consensus 1014 ~l~~~l~~~~~~~l~~~~~~~~pti~~la~~l~~~ 1048 (1296)
T PRK10252 1014 KLAAQLSRQFARQVTPGQVMVASTVAKLATLLDAE 1048 (1296)
T ss_pred HHHHHHHHHhCCCCCHHHHhcCCCHHHHHHHHhcc
Confidence 99999999999999999999999999999999764
No 25
>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase. Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.
Probab=98.56 E-value=3e-07 Score=86.95 Aligned_cols=112 Identities=17% Similarity=0.249 Sum_probs=86.8
Q ss_pred ccceeecccceeeccCCCCC-CccccccC-cccc---------cccCChHHHHHHHHHHHHHHhCCCCCCCCCCCCCccc
Q 032506 21 TQGRISSVNSVSLSINGKSF-PSLRMRSA-PRFR---------VSCAAKPETVDKVCQIVKKQLALPADTTVTGESKFAA 89 (139)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~r~~---------~~~~~~~ei~~~V~~Il~e~l~i~~~~~I~~dt~l~d 89 (139)
.|..+.-++.++.+.+||-. ..++. +. ..+. .......++.+.|.+++.+.++.+.+ +++.+++|++
T Consensus 799 ~P~~~~~~~~lP~t~~GKidr~~L~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~vl~~~~~-~i~~~~~ff~ 876 (1389)
T TIGR03443 799 IPTVIVPLKKLPLNPNGKVDKPALPF-PDTAQLAAVAKNRSASAADEEFTETEREIRDLWLELLPNRPA-TISPDDSFFD 876 (1389)
T ss_pred CCceEEEcccCCCCCCccccHhhcCC-CchhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCcc-ccCcCcchhh
Confidence 45666777788888777652 22221 11 1111 12234457888999999999998764 7999999999
Q ss_pred cCCChHHHHHHHHHHHHHhCCccChhhhccCCCHHHHHHHHHHHH
Q 032506 90 LGADSLDTVEIVMGLEEEFGISVEEESAQTISTVQDAADLIEKLI 134 (139)
Q Consensus 90 LGlDSLd~veLv~~LEeeFgI~i~~~~l~~~~TV~dl~~~I~~~~ 134 (139)
+|.|||..++++..|++.||++++..++.+..|+.+++++|....
T Consensus 877 lGgdSL~a~~l~~~l~~~~~~~l~~~~i~~~~ti~~la~~l~~~~ 921 (1389)
T TIGR03443 877 LGGHSILATRMIFELRKKLNVELPLGLIFKSPTIKGFAKEVDRLK 921 (1389)
T ss_pred cCccHHHHHHHHHHHHHHhCCCcCHHHHhcCCCHHHHHHHHHhhh
Confidence 999999999999999999999999999999999999999997654
No 26
>PRK12467 peptide synthase; Provisional
Probab=98.47 E-value=6.9e-07 Score=92.32 Aligned_cols=108 Identities=19% Similarity=0.278 Sum_probs=88.1
Q ss_pred ccceeecccceeeccCCCC-CCccccccCcc-cccccCChHHHHHHHHHHHHHHhCCCCCCCCCCCCCccccCCChHHHH
Q 032506 21 TQGRISSVNSVSLSINGKS-FPSLRMRSAPR-FRVSCAAKPETVDKVCQIVKKQLALPADTTVTGESKFAALGADSLDTV 98 (139)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~r-~~~~~~~~~ei~~~V~~Il~e~l~i~~~~~I~~dt~l~dLGlDSLd~v 98 (139)
.|..+.-++.++.+.+||- ...++ .|... ...+.....++++.+.++++++|+++ .|..+++|++||.|||..+
T Consensus 3565 vP~~~~~l~~lP~t~~GKidR~~L~-~~~~~~~~~~~~p~~~~e~~l~~i~~~vL~~~---~i~~~d~Ff~lGgdSl~a~ 3640 (3956)
T PRK12467 3565 VPAQLLVLAAMPLGPNGKVDRKALP-DPDAKGSREYVAPRSEVEQQLAAIWADVLGVE---QVGVTDNFFELGGDSLLAL 3640 (3956)
T ss_pred CCCeeeeeccCCCCCCCccchhhcC-CCCccccccccCCCCHHHHHHHHHHHHHhCCC---CCCCCcchhcccchHHHHH
Confidence 5667777888888887765 33332 12111 23334567789999999999999985 5889999999999999999
Q ss_pred HHHHHHHHHhCCccChhhhccCCCHHHHHHHHHH
Q 032506 99 EIVMGLEEEFGISVEEESAQTISTVQDAADLIEK 132 (139)
Q Consensus 99 eLv~~LEeeFgI~i~~~~l~~~~TV~dl~~~I~~ 132 (139)
+|+..|+++||++++..++.+..|+.++++++..
T Consensus 3641 ~l~~~l~~~~g~~l~~~~lf~~pti~~la~~~~~ 3674 (3956)
T PRK12467 3641 QVLSRIRQSLGLKLSLRDLMSAPTIAELAGYSPL 3674 (3956)
T ss_pred HHHHHHHHHhCCCCCHHHHHhCCCHHHHHHHHhh
Confidence 9999999999999999999999999999999965
No 27
>PRK05691 peptide synthase; Validated
Probab=98.33 E-value=2.3e-06 Score=89.00 Aligned_cols=109 Identities=22% Similarity=0.212 Sum_probs=88.0
Q ss_pred ccceeecccceeeccCCCC-CCccccccC--c-ccccccCChHHHHHHHHHHHHHHhCCCCCCCCCCCCCccccCCChHH
Q 032506 21 TQGRISSVNSVSLSINGKS-FPSLRMRSA--P-RFRVSCAAKPETVDKVCQIVKKQLALPADTTVTGESKFAALGADSLD 96 (139)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~-r~~~~~~~~~ei~~~V~~Il~e~l~i~~~~~I~~dt~l~dLGlDSLd 96 (139)
.|..+..++.++++.+||- ...++ .+. . .-..+...+.+++..|++|+++.|+++ .|..+++|++||.|||.
T Consensus 4199 vP~~~~~~~~lP~t~~GKidr~~L~-~~~~~~~~~~~~~~p~~~~e~~l~~iw~~vL~~~---~i~~~d~Ff~lGg~Sl~ 4274 (4334)
T PRK05691 4199 VPLHWLWLDRLPLNANGKLDRKALP-ALDIGQLQSQAYLAPRNELEQTLATIWADVLKVE---RVGVHDNFFELGGHSLL 4274 (4334)
T ss_pred cCcceeecccCCCCCCCcccHhhcC-CCccccccccccCCCCCHHHHHHHHHHHHHhCCC---cCCCCCchhhcCCcHHH
Confidence 5667777788888888765 22222 111 1 112234567899999999999999974 68899999999999999
Q ss_pred HHHHHHHHHHHhCCccChhhhccCCCHHHHHHHHHHH
Q 032506 97 TVEIVMGLEEEFGISVEEESAQTISTVQDAADLIEKL 133 (139)
Q Consensus 97 ~veLv~~LEeeFgI~i~~~~l~~~~TV~dl~~~I~~~ 133 (139)
.+.++..+++.||++++..++....|+.+++++|...
T Consensus 4275 a~~l~~~~~~~~~~~~~~~~~f~~~t~~~la~~~~~~ 4311 (4334)
T PRK05691 4275 ATQIASRVQKALQRNVPLRAMFECSTVEELAEYIEGL 4311 (4334)
T ss_pred HHHHHHHHHHHhCCCccHHHHhcCCCHHHHHHHHhhh
Confidence 9999999999999999999999999999999999753
No 28
>PRK12467 peptide synthase; Provisional
Probab=98.30 E-value=2.7e-06 Score=88.09 Aligned_cols=109 Identities=19% Similarity=0.225 Sum_probs=87.4
Q ss_pred ccceeecccceeeccCCCCC-CccccccC--cccccccCChHHHHHHHHHHHHHHhCCCCCCCCCCCCCccccCCChHHH
Q 032506 21 TQGRISSVNSVSLSINGKSF-PSLRMRSA--PRFRVSCAAKPETVDKVCQIVKKQLALPADTTVTGESKFAALGADSLDT 97 (139)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~r~~~~~~~~~ei~~~V~~Il~e~l~i~~~~~I~~dt~l~dLGlDSLd~ 97 (139)
.|.++..++.++.+.+||-. ..++ +|. ..-..+.....++.+.|.+++++.|+++ .|..+++|++||.|||..
T Consensus 989 vP~~~~~l~~lP~t~~GKidR~~L~-~~~~~~~~~~~~~p~~~~e~~l~~i~~~vL~~~---~i~~~d~Ff~lGgdSl~a 1064 (3956)
T PRK12467 989 VPAHLLLLDSLPLTPNGKLDRKALP-KPDASAVQATFVAPQTELEKRLAAIWADVLKVE---RVGLTDNFFELGGHSLLA 1064 (3956)
T ss_pred CCceEeeecccCCCCCCCcCHhhcC-CcccccccccccCCCCHHHHHHHHHHHHHhCCC---CCCCCCCchhccCccHHH
Confidence 46667777888888887662 2221 121 1112334566788999999999999974 688999999999999999
Q ss_pred HHHHHHHHHHhCCccChhhhccCCCHHHHHHHHHHH
Q 032506 98 VEIVMGLEEEFGISVEEESAQTISTVQDAADLIEKL 133 (139)
Q Consensus 98 veLv~~LEeeFgI~i~~~~l~~~~TV~dl~~~I~~~ 133 (139)
++++..++++||+.++..++.+..|+.++++++...
T Consensus 1065 ~~l~~~~~~~~g~~l~~~~lf~~~t~~~la~~~~~~ 1100 (3956)
T PRK12467 1065 TQVISRVRQRLGIQVPLRTLFEHQTLAGFAQAVAAQ 1100 (3956)
T ss_pred HHHHHHHHHHhCCCcchHHhhccchHHHHHHHhhhh
Confidence 999999999999999999999999999999998754
No 29
>PRK05691 peptide synthase; Validated
Probab=98.26 E-value=3.6e-06 Score=87.61 Aligned_cols=110 Identities=19% Similarity=0.248 Sum_probs=88.7
Q ss_pred ccceeecccceeeccCCCCCC-ccccccCcccccccCChHHHHHHHHHHHHHHhCCCCCCCCCCCCCccccCCChHHHHH
Q 032506 21 TQGRISSVNSVSLSINGKSFP-SLRMRSAPRFRVSCAAKPETVDKVCQIVKKQLALPADTTVTGESKFAALGADSLDTVE 99 (139)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~r~~~~~~~~~ei~~~V~~Il~e~l~i~~~~~I~~dt~l~dLGlDSLd~ve 99 (139)
.|.++..+..++.+.+||-.. .++ ++..+.........++.+.|.+++++.|+++ .|..+++|++||.|||..+.
T Consensus 1599 vP~~~~~~~~lP~t~~GKidr~~L~-~~~~~~~~~~~p~~~~e~~l~~iw~~vL~~~---~i~~~d~Ff~lGGdSl~a~~ 1674 (4334)
T PRK05691 1599 VPAQLIRLDQMPLGPSGKLDRRALP-EPVWQQREHVEPRTELQQQIAAIWREVLGLP---RVGLRDDFFALGGHSLLATQ 1674 (4334)
T ss_pred CCcEEEEccccCCCCCCCcChhhcC-cccccccccCCCCCHHHHHHHHHHHHHhCCC---CCCCCCchHHhcccHHHHHH
Confidence 567777788888888876632 222 1211222334566789999999999999985 58889999999999999999
Q ss_pred HHHHHHHHhCCccChhhhccCCCHHHHHHHHHHHH
Q 032506 100 IVMGLEEEFGISVEEESAQTISTVQDAADLIEKLI 134 (139)
Q Consensus 100 Lv~~LEeeFgI~i~~~~l~~~~TV~dl~~~I~~~~ 134 (139)
|+..+.++||+.++..++.+..|+.+++++|....
T Consensus 1675 l~~~~~~~~~~~l~~~~~f~~~tl~~la~~i~~~~ 1709 (4334)
T PRK05691 1675 IVSRTRQACDVELPLRALFEASELGAFAEQVARIQ 1709 (4334)
T ss_pred HHHHHHHHhCCCcchhhhhcCCcHHHHHHHhhhhh
Confidence 99999999999999999999999999999997643
No 30
>PRK12316 peptide synthase; Provisional
Probab=98.26 E-value=3.6e-06 Score=88.64 Aligned_cols=109 Identities=19% Similarity=0.239 Sum_probs=85.6
Q ss_pred ccceeecccceeeccCCCCCC-ccccccC-cc-cccccCChHHHHHHHHHHHHHHhCCCCCCCCCCCCCccccCCChHHH
Q 032506 21 TQGRISSVNSVSLSINGKSFP-SLRMRSA-PR-FRVSCAAKPETVDKVCQIVKKQLALPADTTVTGESKFAALGADSLDT 97 (139)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~r-~~~~~~~~~ei~~~V~~Il~e~l~i~~~~~I~~dt~l~dLGlDSLd~ 97 (139)
.|.++.-+..++.+.+||... .++ ++. .. -..+.....++..++.+++++.|+++ .|..+++|++||.|||..
T Consensus 5031 vP~~~~~~~~lP~t~~GKvdR~~L~-~~~~~~~~~~~~~~~~~~e~~l~~i~~~vL~~~---~i~~~~~Ff~lGgdSl~a 5106 (5163)
T PRK12316 5031 VPAHLVFLARMPLTPNGKLDRKALP-QPDASLLQQAYVAPRSELEQQVAAIWAEVLQLE---RVGLDDNFFELGGHSLLA 5106 (5163)
T ss_pred CCcceeecccCCCCCCcccChhhcC-CccccccccccCCCCcHHHHHHHHHHHHHhCCC---CCCCCCChhhccchHHHH
Confidence 455666677777777776522 221 111 11 12234566789999999999999875 688999999999999999
Q ss_pred HHHHHHHHHHhCCccChhhhccCCCHHHHHHHHHHH
Q 032506 98 VEIVMGLEEEFGISVEEESAQTISTVQDAADLIEKL 133 (139)
Q Consensus 98 veLv~~LEeeFgI~i~~~~l~~~~TV~dl~~~I~~~ 133 (139)
+.|+..|+++||++++..++....|+++++++|...
T Consensus 5107 ~~l~~~l~~~~g~~l~~~~lf~~pti~~la~~~~~~ 5142 (5163)
T PRK12316 5107 IQVTSRIQLELGLELPLRELFQTPTLAAFVELAAAA 5142 (5163)
T ss_pred HHHHHHHHHHcCCCCCHHHHHcCCCHHHHHHHHHhc
Confidence 999999999999999999999999999999999654
No 31
>PRK12316 peptide synthase; Provisional
Probab=98.24 E-value=4e-06 Score=88.34 Aligned_cols=110 Identities=18% Similarity=0.196 Sum_probs=88.4
Q ss_pred ccceeecccceeeccCCCC-CCccccccC-c-ccccccCChHHHHHHHHHHHHHHhCCCCCCCCCCCCCccccCCChHHH
Q 032506 21 TQGRISSVNSVSLSINGKS-FPSLRMRSA-P-RFRVSCAAKPETVDKVCQIVKKQLALPADTTVTGESKFAALGADSLDT 97 (139)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~-r~~~~~~~~~ei~~~V~~Il~e~l~i~~~~~I~~dt~l~dLGlDSLd~ 97 (139)
.|..+.-+..++.+.+||- ...++ ++. . ....+.....++.+++.+++++.++++ .|..+++|++||.|||..
T Consensus 2475 vP~~~~~l~~lP~t~~GKidR~~L~-~~~~~~~~~~~~~p~~~~e~~l~~iw~~vL~~~---~i~~~d~Ff~lGgdSl~a 2550 (5163)
T PRK12316 2475 VPAHWVVLERLPLNPNGKLDRKALP-KPDVSQLRQAYVAPQEGLEQRLAAIWQAVLKVE---QVGLDDHFFELGGHSLLA 2550 (5163)
T ss_pred CcceEeeecccCCCCCCccCHhhcC-CCccccccccccCCCCHHHHHHHHHHHHHhCCC---ccCCCCchhhhcchHHHH
Confidence 5777778888888888875 22222 121 1 112334566788999999999999984 588999999999999999
Q ss_pred HHHHHHHHHHhCCccChhhhccCCCHHHHHHHHHHHH
Q 032506 98 VEIVMGLEEEFGISVEEESAQTISTVQDAADLIEKLI 134 (139)
Q Consensus 98 veLv~~LEeeFgI~i~~~~l~~~~TV~dl~~~I~~~~ 134 (139)
++++..++++||+.++..++.+..|+++++..+....
T Consensus 2551 ~~l~~~~~~~~g~~l~~~~~f~~~ti~~la~~l~~~~ 2587 (5163)
T PRK12316 2551 TQVVSRVRQDLGLEVPLRILFERPTLAAFAASLESGQ 2587 (5163)
T ss_pred HHHHHHHHHHhCCCcCHHHHhhCccHHHHhhhhhhhh
Confidence 9999999999999999999999999999999886543
No 32
>COG3433 Aryl carrier domain [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.04 E-value=1.2e-05 Score=53.23 Aligned_cols=70 Identities=10% Similarity=0.182 Sum_probs=60.0
Q ss_pred HHHHHHHHhCCCCCCCCCCCCCccccCCChHHHHHHHHHHHHHhCCccChhhhccCCCHHHHHHHHHHHHhh
Q 032506 65 VCQIVKKQLALPADTTVTGESKFAALGADSLDTVEIVMGLEEEFGISVEEESAQTISTVQDAADLIEKLIET 136 (139)
Q Consensus 65 V~~Il~e~l~i~~~~~I~~dt~l~dLGlDSLd~veLv~~LEeeFgI~i~~~~l~~~~TV~dl~~~I~~~~~~ 136 (139)
+++.+.+.++..++ +++++.+|.+.|+||+-+|.++....++ |..|+..++..-.|++.-.+++.....+
T Consensus 3 Lr~~~~~Ll~e~~~-~l~dqeNLi~~GLDSiR~M~L~~~wR~~-G~~i~F~~La~~PTl~aW~qLl~~~~~~ 72 (74)
T COG3433 3 LREQIAELLGESVE-ELDDQENLIDYGLDSIRMMALLERWRKR-GADIDFAQLAANPTLAAWWQLLSTRSKQ 72 (74)
T ss_pred HHHHHHHHHcCChh-hcCchhhHHHhchhHHHHHHHHHHHHHc-CCcccHHHHHhCccHHHHHHHHHhcccC
Confidence 44566666666664 8999999999999999999999999887 9999999999999999999998876543
No 33
>TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA. Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD.
Probab=97.98 E-value=1e-05 Score=81.69 Aligned_cols=76 Identities=17% Similarity=0.307 Sum_probs=69.6
Q ss_pred ChHHHHHHHHHHHHHHhCCCCCCCCCCCCCcc-ccCCChHHHHHHHHHHHHHhC--CccChhhhccCCCHHHHHHHHHHH
Q 032506 57 AKPETVDKVCQIVKKQLALPADTTVTGESKFA-ALGADSLDTVEIVMGLEEEFG--ISVEEESAQTISTVQDAADLIEKL 133 (139)
Q Consensus 57 ~~~ei~~~V~~Il~e~l~i~~~~~I~~dt~l~-dLGlDSLd~veLv~~LEeeFg--I~i~~~~l~~~~TV~dl~~~I~~~ 133 (139)
...++.+.+.+++++..|.+.+ .+++|.+|. |||+||+..+|++..++++|+ .+++++++..++|++++++|+...
T Consensus 1208 ~~~~~~~~~l~vvae~tgyp~e-~L~ld~d~eaDLgIDSIkrveil~~l~~~~~~~~e~~pe~l~~~rTl~~iv~~~~~~ 1286 (2582)
T TIGR02813 1208 NDSAIQQVMMEVVAEKTGYPTE-MLELEMDMEADLGIDSIKRVEILGSVQEIINDLPELNPEDLAELRTLGEIVNYMQSK 1286 (2582)
T ss_pred chhHHHHHHHHHHHhhccCChH-hcccccccccccCcchhhhHHhhhhhhhhccCCCCCChhhhcccccHHHHHHhhccc
Confidence 4567899999999999999985 899999998 999999999999999999998 788999999999999999998644
No 34
>PF07377 DUF1493: Protein of unknown function (DUF1493); InterPro: IPR010862 This family consists of several bacterial proteins of around 115 residues in length. Members of this family are largely found in Salmonella and Yersinia species and several have been described as being putative cytoplasmic proteins. The function of this family is unknown.
Probab=97.35 E-value=0.00061 Score=48.27 Aligned_cols=59 Identities=14% Similarity=0.282 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHhCCC---CCCCCCCCCCcc-ccCCChHHHHHHHHHHHHHhCCccChhhh
Q 032506 59 PETVDKVCQIVKKQLALP---ADTTVTGESKFA-ALGADSLDTVEIVMGLEEEFGISVEEESA 117 (139)
Q Consensus 59 ~ei~~~V~~Il~e~l~i~---~~~~I~~dt~l~-dLGlDSLd~veLv~~LEeeFgI~i~~~~l 117 (139)
+++.++|.+.|.+..+.. ....+++++.|. |||++--+..+++....++|+|.+..=++
T Consensus 2 ~~i~~~I~~fi~~~~~~~~~~~~~~it~dt~L~~DL~~~~dda~elm~~f~~~F~Vd~~~f~~ 64 (111)
T PF07377_consen 2 DDIEQEIIEFIREENGPYLFFKKKPITPDTDLQEDLGLDGDDAEELMEDFFERFNVDLSDFDF 64 (111)
T ss_pred chHHHHHHHHHHHHcCcccccCcccCCCCCcHHHhcCCCHHHHHHHHHHHHHHhCCCcCccCH
Confidence 678999999999999873 224899999997 99999999999999999999999865554
No 35
>KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism]
Probab=96.74 E-value=0.00094 Score=63.92 Aligned_cols=55 Identities=29% Similarity=0.419 Sum_probs=48.2
Q ss_pred HHHHHHHHHhCCCCCCCCCCCCCccccCCChHHHHHHHHHHHHHhCCccChhhhc
Q 032506 64 KVCQIVKKQLALPADTTVTGESKFAALGADSLDTVEIVMGLEEEFGISVEEESAQ 118 (139)
Q Consensus 64 ~V~~Il~e~l~i~~~~~I~~dt~l~dLGlDSLd~veLv~~LEeeFgI~i~~~~l~ 118 (139)
.+.+-|+.++|+.+-..++++++|.|||+|||+-+||--.||.+|++-+...++.
T Consensus 2008 dLiatiA~IlGlrD~~~vn~~asLaDLGlDSLMsvEikQtLER~~dlVLS~qEiR 2062 (2376)
T KOG1202|consen 2008 DLIATIAHILGLRDLKAVNDDASLADLGLDSLMSVEIKQTLEREFDLVLSAQEIR 2062 (2376)
T ss_pred cHHHHHHHHhcchhHhhccCCCchhhccchhhhhHHHHHHHhhhhceeeeHHHHH
Confidence 3566777788887656899999999999999999999999999999999887764
No 36
>PF10501 Ribosomal_L50: Ribosomal subunit 39S; InterPro: IPR018305 This entry represents the L50 protein from the mitochondrial 39S ribosomal subunit. L50 appears to be a secondary RNA-binding protein []. The 39S ribosomal protein appears to be a subunit of one of the larger mitochondrial 66S or 70S units []. Under conditions of ethanol-stress in rats the larger subunit is largely dissociated into its smaller components [].; GO: 0005739 mitochondrion
Probab=95.80 E-value=0.1 Score=36.92 Aligned_cols=75 Identities=13% Similarity=0.162 Sum_probs=58.2
Q ss_pred ChHHHHHHHHHHHHHHhCCCCCCCC-CCCCCccccCCCh-HHHHHHHHHHHHHhCCccChhhhccCCCHHHHHHHHHH
Q 032506 57 AKPETVDKVCQIVKKQLALPADTTV-TGESKFAALGADS-LDTVEIVMGLEEEFGISVEEESAQTISTVQDAADLIEK 132 (139)
Q Consensus 57 ~~~ei~~~V~~Il~e~l~i~~~~~I-~~dt~l~dLGlDS-Ld~veLv~~LEeeFgI~i~~~~l~~~~TV~dl~~~I~~ 132 (139)
+++++.+.|.+..++.++.+.. .. ..+..+.++-++. -.-..++.++.+.+|..||+..+..+.|++++.+++.+
T Consensus 5 ~~e~l~~~i~e~~~e~~~~~~~-~~~~~~~~~~~~~l~D~~~KF~~lKrl~~~tGh~ipD~~L~~~~T~~dl~~~~~~ 81 (112)
T PF10501_consen 5 PPEDLEEIIEESAKEVLGAEGF-GSQSWNNDWLDISLEDLQLKFAFLKRLQQLTGHRIPDSKLHSIHTVGDLLNFYEK 81 (112)
T ss_pred CHHHHHHHHHHHHHHHhccccc-ccccCCccccccccCCHHHHHHHHHHHHHHHCCCCCcHHHHhcCCHHHHHHHHHH
Confidence 4567888899999988886542 22 2444454544443 45678999999999999999999999999999999954
No 37
>TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family. Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names.
Probab=95.26 E-value=0.079 Score=44.68 Aligned_cols=79 Identities=16% Similarity=0.171 Sum_probs=58.2
Q ss_pred ChHHHHHHHHHHHHHHhCCCC--------CCCCCCCCCcc--ccCCChHHHHHHHHHHHHHhCCcc-Chhh-hccCCCHH
Q 032506 57 AKPETVDKVCQIVKKQLALPA--------DTTVTGESKFA--ALGADSLDTVEIVMGLEEEFGISV-EEES-AQTISTVQ 124 (139)
Q Consensus 57 ~~~ei~~~V~~Il~e~l~i~~--------~~~I~~dt~l~--dLGlDSLd~veLv~~LEeeFgI~i-~~~~-l~~~~TV~ 124 (139)
+...+...+..+|...+.-.. ...++.|+.+. ++|+|||+.++|+.++-+.|++.= ..++ +...++++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (386)
T TIGR02372 4 DAEAVGRLLVSLIAAEQQEGRVQHHQMPEARLLTADLRIDEETLGLDSLLRLSLVTAVAGFFHLSDTGTEDYLLVRRRIG 83 (386)
T ss_pred cHHHHHHHHHHHHHHHHHhcCCCcccCchhhhcccccccccccccccHHHHHHHHHHHHHHhcccccchhhhhhhhccHH
Confidence 456778888888887763221 12377788884 799999999999999999999942 2233 34567899
Q ss_pred HHHHHHHHHHh
Q 032506 125 DAADLIEKLIE 135 (139)
Q Consensus 125 dl~~~I~~~~~ 135 (139)
+.+|+|.+.-+
T Consensus 84 ~~~~~~~~~~~ 94 (386)
T TIGR02372 84 EWVDLIAHHST 94 (386)
T ss_pred HHHHHHHhcCC
Confidence 99999976543
No 38
>KOG2452 consensus Formyltetrahydrofolate dehydrogenase [Nucleotide transport and metabolism]
Probab=93.65 E-value=0.17 Score=44.87 Aligned_cols=77 Identities=23% Similarity=0.283 Sum_probs=66.2
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCCCCCCCccccCCChHHHHHHHHHHHHHhC-CccChhhhccCCCHHHHHHHHHHHHhh
Q 032506 58 KPETVDKVCQIVKKQLALPADTTVTGESKFAALGADSLDTVEIVMGLEEEFG-ISVEEESAQTISTVQDAADLIEKLIET 136 (139)
Q Consensus 58 ~~ei~~~V~~Il~e~l~i~~~~~I~~dt~l~dLGlDSLd~veLv~~LEeeFg-I~i~~~~l~~~~TV~dl~~~I~~~~~~ 136 (139)
...+.++++.++..+|..-. ++..+++|+.-|..|.|.+.|+-++.+..| .+++.+++..-.|+++.++.+.+++..
T Consensus 320 e~~t~~~~~~iw~~il~kv~--~v~~~tdff~sga~s~dv~rlveeik~~~~g~ele~~~iy~~~t~g~~i~~~ir~lrg 397 (881)
T KOG2452|consen 320 ELVTAEAVRSVWQRILPKVL--EVEDSTDFFKSGAASVDVVRLVEEVKELCDGLELENEDVYMASTFGDFIQLLVRKLRG 397 (881)
T ss_pred HHHHHHHHHHHHHHhcchhe--eecccchHhhcCccchhHHHHHHHHHHhCCcceeccCceEeccchhhHHHHHHHHhcC
Confidence 34578899999998876432 688999999999999999999999988877 899999998889999999998877643
No 39
>KOG1178 consensus Non-ribosomal peptide synthetase/alpha-aminoadipate reductase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism]
Probab=92.11 E-value=0.25 Score=47.06 Aligned_cols=110 Identities=19% Similarity=0.129 Sum_probs=73.0
Q ss_pred ccceeecccceeeccCCCC-CCccccccCccc-----ccccC---ChHHHHHHHHHHHHHHhCCCCCCCCCCCCCccccC
Q 032506 21 TQGRISSVNSVSLSINGKS-FPSLRMRSAPRF-----RVSCA---AKPETVDKVCQIVKKQLALPADTTVTGESKFAALG 91 (139)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~r~-----~~~~~---~~~ei~~~V~~Il~e~l~i~~~~~I~~dt~l~dLG 91 (139)
.|..+..+..++++.+||- .+.+..-...+. .+... .-......++..+-...+. ..+.++++|+++|
T Consensus 550 vPs~~V~l~~vPl~~~GKvDkkaL~~~~s~~~~~~~s~~~~~~~~~~~~~~~~v~d~~l~~~~~---~~~s~d~~fF~lG 626 (1032)
T KOG1178|consen 550 LPSLVVPLAKVPLNPNGKVDKKALLEYNSKLTNVQDSSLSEAKDSILSLPLSTVFDLWLSIGSL---AIVSPDSSFFQLG 626 (1032)
T ss_pred cceEEEEhhhCCcCCCCCcChhhhhhhhhhhcccccceeeccccccccccccchhhhhhhhcCc---cccCCCcchhhhc
Confidence 5667788888888887765 444432111111 11110 1112233444444444441 2578999999999
Q ss_pred CChHHHHHHHHHHHHHhCCccChhhhccCCCHHHHHHHHHHH
Q 032506 92 ADSLDTVEIVMGLEEEFGISVEEESAQTISTVQDAADLIEKL 133 (139)
Q Consensus 92 lDSLd~veLv~~LEeeFgI~i~~~~l~~~~TV~dl~~~I~~~ 133 (139)
.||+..+-++..+...+.++.|..-.....|+..+..-+...
T Consensus 627 gdSi~av~~~~~lr~~~~v~~~~~l~~~l~ti~~~~~~~~~~ 668 (1032)
T KOG1178|consen 627 GDSISAVRLSGLLRKKGYVEGPLGLIFKLLTIVNLESGIIRI 668 (1032)
T ss_pred chhHHHHHHHHhhhhhheeccccccccchhhHHHHHHHHhhh
Confidence 999999999999999999999998888888888776665443
No 40
>PF08766 DEK_C: DEK C terminal domain; InterPro: IPR014876 DEK is a chromatin associated protein that is linked with cancers and autoimmune disease. This domain is found at the C-terminal of DEK and is of clinical importance since it can reverse the characteristic abnormal DNA-mutagen sensitivity in fibroblasts from ataxia-telangiectasia (A-T) patients []. The structure of this domain shows it to be homologous to the E2F/DP transcription factor family []. This domain is also found in chitin synthase proteins like Q8TF96 from SWISSPROT, and in protein phosphatases such as Q6NN85 from SWISSPROT. ; PDB: 1Q1V_A.
Probab=84.24 E-value=1.7 Score=26.66 Aligned_cols=25 Identities=24% Similarity=0.488 Sum_probs=16.4
Q ss_pred CCChHHHHHHHHHHHHHhCCccChh
Q 032506 91 GADSLDTVEIVMGLEEEFGISVEEE 115 (139)
Q Consensus 91 GlDSLd~veLv~~LEeeFgI~i~~~ 115 (139)
+++++..=.+...||++||+++.+.
T Consensus 17 dl~~vT~k~vr~~Le~~~~~dL~~~ 41 (54)
T PF08766_consen 17 DLDTVTKKQVREQLEERFGVDLSSR 41 (54)
T ss_dssp -GGG--HHHHHHHHHHH-SS--SHH
T ss_pred CHhHhhHHHHHHHHHHHHCCCcHHH
Confidence 4568888999999999999998853
No 41
>COG1905 NuoE NADH:ubiquinone oxidoreductase 24 kD subunit [Energy production and conversion]
Probab=58.04 E-value=5.2 Score=30.34 Aligned_cols=85 Identities=20% Similarity=0.352 Sum_probs=48.7
Q ss_pred CccccccCccc--cc----ccCChHHHHHHHHHHHHHHhCCCCCCCCCCCCCccccCCChHHHHHHHHHHHHHhCCccCh
Q 032506 41 PSLRMRSAPRF--RV----SCAAKPETVDKVCQIVKKQLALPADTTVTGESKFAALGADSLDTVEIVMGLEEEFGISVEE 114 (139)
Q Consensus 41 ~~~~~~~~~r~--~~----~~~~~~ei~~~V~~Il~e~l~i~~~~~I~~dt~l~dLGlDSLd~veLv~~LEeeFgI~i~~ 114 (139)
..|+++|..|. ++ .|+-+. -+.|.+.+.+.+++.++ +.++|-.|. |.-++=+......=-+-|++
T Consensus 68 ~~f~~~P~Gr~~i~VC~~t~C~l~G--s~~l~~~l~~~lgi~~g-ett~DG~ft------l~~v~ClGaC~~AP~vmind 138 (160)
T COG1905 68 TQFFLKPVGRHHIRVCTGTACHLKG--SEALLKALEKKLGIKPG-ETTADGKFT------LEPVECLGACGQAPVVMIND 138 (160)
T ss_pred hhhccCcCCCeEEEEeCCcHHhhcC--hHHHHHHHHHHhCCCCC-CcCCCCeEE------EeeeeeecccccCCEEEECC
Confidence 34566776553 33 455443 57788888899999996 899998884 11111111111112233444
Q ss_pred hhhccCCCHHHHHHHHHHHHh
Q 032506 115 ESAQTISTVQDAADLIEKLIE 135 (139)
Q Consensus 115 ~~l~~~~TV~dl~~~I~~~~~ 135 (139)
+.+.+ .|...+.+.+++..+
T Consensus 139 ~~~~~-lt~e~l~eil~~~~~ 158 (160)
T COG1905 139 DVYGR-LTPEKLEEILEKLKA 158 (160)
T ss_pred chhcc-CCHHHHHHHHHHHhc
Confidence 44433 677777777766544
No 42
>COG1669 Predicted nucleotidyltransferases [General function prediction only]
Probab=54.84 E-value=70 Score=22.29 Aligned_cols=57 Identities=18% Similarity=0.215 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHhCCCC--------CCCCCCCCCcc-----ccCCChHHHHHHHHHHHHHhCCccChhh
Q 032506 60 ETVDKVCQIVKKQLALPA--------DTTVTGESKFA-----ALGADSLDTVEIVMGLEEEFGISVEEES 116 (139)
Q Consensus 60 ei~~~V~~Il~e~l~i~~--------~~~I~~dt~l~-----dLGlDSLd~veLv~~LEeeFgI~i~~~~ 116 (139)
++..++...+.+..|+.. -.+-++++++. .-|..-++++++...|++-||++++--.
T Consensus 9 ~~lr~~~~~l~~k~gv~~~~vFGS~aRgE~~~~SDIDILVef~~~~~ll~~~~l~~~L~~llg~~VDL~t 78 (97)
T COG1669 9 KILRKIKPELKEKYGVKRVAVFGSYARGEQKPDSDIDILVEFEPGKTLLDLVRLEDELSDLLGRKVDLVT 78 (97)
T ss_pred HHHHHHHHHHHHHhCCceEEEeeeeecCCCCCCCCceeEEeecCCccHHHHHHHHHHHHHHhCCeeeeec
Confidence 446777778886665432 02445566552 3468999999999999999999986543
No 43
>PF03471 CorC_HlyC: Transporter associated domain; InterPro: IPR005170 This small domain is found in a family of proteins with the CBS IPR002550 from INTERPRO domain and two CBS domains with this domain found at the C terminus of the proteins, the domain is also found at the C terminus of some Na+/H+ antiporters. This domain is also found in CorC that is involved in Magnesium and cobalt efflux. The function of this domain is uncertain but might be involved in modulating transport of ion substrates.; PDB: 3DED_F 2PLI_C 2R2Z_A 2P4P_A 2O3G_A 2P3H_A 3LLB_A 3LAE_A 2P13_B 2NQW_A ....
Probab=49.62 E-value=23 Score=22.95 Aligned_cols=29 Identities=21% Similarity=0.158 Sum_probs=19.9
Q ss_pred HHHHHHHhCCccChhhhccCCCHHHHHHHHHH
Q 032506 101 VMGLEEEFGISVEEESAQTISTVQDAADLIEK 132 (139)
Q Consensus 101 v~~LEeeFgI~i~~~~l~~~~TV~dl~~~I~~ 132 (139)
+..+++.||+++|++ ++.|++.++-....
T Consensus 16 l~~l~~~~~~~l~~~---~~~Tl~G~i~~~l~ 44 (81)
T PF03471_consen 16 LDDLNELLGLDLPEE---DYDTLGGLILEQLG 44 (81)
T ss_dssp HHHHHHHHTS-TTTT---TTSBHHHHHHHHHT
T ss_pred HHHHHHHHCcCCCcc---chhhHHHHHHHHcC
Confidence 356889999999985 45688887654433
No 44
>PLN00204 CP12 gene family protein; Provisional
Probab=48.74 E-value=24 Score=25.75 Aligned_cols=23 Identities=26% Similarity=0.170 Sum_probs=15.8
Q ss_pred cccccCChHHHHHHHHHHHHHHh
Q 032506 51 FRVSCAAKPETVDKVCQIVKKQL 73 (139)
Q Consensus 51 ~~~~~~~~~ei~~~V~~Il~e~l 73 (139)
++...++.+.+.++|.+-|++--
T Consensus 47 ~~~v~a~~~~L~e~Ie~aI~eAr 69 (126)
T PLN00204 47 VRPVRAAPEGISEKVEKSIKEAE 69 (126)
T ss_pred EEeeecCCccHHHHHHHHHHHHH
Confidence 44455666678888888887653
No 45
>smart00151 SWIB SWI complex, BAF60b domains.
Probab=46.44 E-value=45 Score=21.67 Aligned_cols=57 Identities=16% Similarity=0.271 Sum_probs=40.9
Q ss_pred ccccCChHHHHHHHHHHHHHHhCCCCC--CCCCCCCCcc-ccCCChHHHHHHHHHHHHHh
Q 032506 52 RVSCAAKPETVDKVCQIVKKQLALPAD--TTVTGESKFA-ALGADSLDTVEIVMGLEEEF 108 (139)
Q Consensus 52 ~~~~~~~~ei~~~V~~Il~e~l~i~~~--~~I~~dt~l~-dLGlDSLd~veLv~~LEeeF 108 (139)
....+++.++...+.+.|++.-=.++. ..|..|..|. -+|.|.+.+.++...|...|
T Consensus 16 g~~~~tr~ev~~~lw~YIk~n~L~d~~~k~~i~~D~~L~~l~~~~~v~~~~~~~ll~~Hl 75 (77)
T smart00151 16 GAPEMTRTEIIKRLWEYIKEHNLQDPQNKREILCDSKLEQIFGKDRMDMFEMNKLLTPHL 75 (77)
T ss_pred CCCcCcHHHHHHHHHHHHHHhcccCCccCCEEecCHHHHHHHCcCeecHHHHHHHHHHHc
Confidence 346788999999999999965222221 2467777776 46888888888887776654
No 46
>PF00874 PRD: PRD domain; InterPro: IPR011608 Transcriptional antiterminators and activators containing phosphoenolpyruvate: sugar phosphotransferase system (PTS) regulation domains (PRDs) form a class of bacterial regulatory proteins whose activity is modulated by phosphorylation. These regulators stimulate the expression of genes and operons involved in carbohydrate metabolism. PRD-containing proteins are involved in the regulation of catabolic operons in Gram+ and Gram- bacteria [, ] and are often characterised by a short N-terminal effector domain that binds to either RNA (CAT-RBD for antiterminators, IPR004341 from INTERPRO) or DNA (for activators), and a duplicated PRD module which is phosphorylated on conserved histidines by the sugar phosphotransferase system (PTS) in response to the availability of carbon source. The phosphorylations are thought to modify the stability of the dimeric proteins and thereby the RNA- or DNA-binding activity of the effector domain [, , ]. PRDs are characterised by the presence of a duplicated regulatory module of ~100 residues that can be reversibly phosphorylated on histidyl residues by the PTS. PRDs in transcriptional antiterminators and activators are PTS regulatory targets that are (de)phosphorylated in response to the availability of carbon sources [, , , , ]. The PRD domain comprises one and often two highly conserved histidines. It forms a compact bundle comprising five helices (alpha1-alpha5). The core of the PRD module consists of two pairs of antiparallel helices making an angle of ~60 degrees. The first pair contains the antiparallel helices alpha1 and alpha4, while the second pair contains alpha2 and alpha5. The third helix (alpha3) is oriented perpendicularly to alpha5 at the periphery of the bundle. The helices are connected by loops of varying length [, , ].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1TLV_A 1H99_A 3GWH_A 3UFE_B 3RIO_A 3NUF_A.
Probab=46.37 E-value=22 Score=22.19 Aligned_cols=22 Identities=27% Similarity=0.543 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHhCCccChhhhc
Q 032506 97 TVEIVMGLEEEFGISVEEESAQ 118 (139)
Q Consensus 97 ~veLv~~LEeeFgI~i~~~~l~ 118 (139)
+-++...+++.||++++++++.
T Consensus 59 a~~~~~~l~~~~~i~~~~~Ei~ 80 (89)
T PF00874_consen 59 AKEICERLEKRYGITLPDDEIA 80 (89)
T ss_dssp HHHHHHHHHHHHTS-S-HHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHH
Confidence 4568889999999999999863
No 47
>PF09346 SMI1_KNR4: SMI1 / KNR4 family (SUKH-1); InterPro: IPR018958 Proteins in this family are involved in the regulation of 1,3-beta-glucan synthase activity and cell-wall formation [, ]. Yeast members of this family are involved in the regulation of cell wall assembly. Saccharomyces cerevisiae (Baker's yeast) protein KNR4 (SMI1) has a regulatory role in chitin deposition and in cell wall assembly []. It was originally identified as a regulator of chitin synthase expression (acting as a repressor) [] and of 1,3-beta-glucan synthase levels []. It was shown to localise in patches at presumptive bud sites in unbudded cells and at the incipient bud site during bud emergence []. KNR4 is believed to connect the PKC1-SLT2 MAPK pathway with cell proliferation. It has been shown to interact with BCK2, a gene involved in cell cycle progression in S. cerevisiae (forming a complex) to allow PKC1 to coordinate the cell cycle (cell proliferation) with cell wall integrity [, ]. PKC1 plays an essential role in cell wall integrity and cell proliferation through a bifurcated PKC1/mitogen-activated protein (MAP) kinase pathway. KNR4 also interacts with the tyrosine-tRNA synthetase protein encoded by TYS1 and is involved in sporulation process []. Note: previously reported evidence that KNR4 may interact with nuclear matrix-association region [] may be due to an artefact [].; PDB: 3D5P_A 2ICG_A.
Probab=34.14 E-value=28 Score=23.16 Aligned_cols=18 Identities=28% Similarity=0.573 Sum_probs=12.1
Q ss_pred HHHHHHHHHhCCccChhh
Q 032506 99 EIVMGLEEEFGISVEEES 116 (139)
Q Consensus 99 eLv~~LEeeFgI~i~~~~ 116 (139)
+=+..+|+++|+.+|++=
T Consensus 5 ~~I~~~E~~lg~~LP~~y 22 (130)
T PF09346_consen 5 EEIQELEEKLGVRLPDDY 22 (130)
T ss_dssp HHHHHHHHHHTS---HHH
T ss_pred HHHHHHHHHhCCCCcHHH
Confidence 457889999999999763
No 48
>smart00860 SMI1_KNR4 SMI1 / KNR4 family. Proteins in this family are involved in the regulation of 1,3-beta-glucan synthase activity and cell-wall formation.
Probab=32.31 E-value=43 Score=21.55 Aligned_cols=18 Identities=33% Similarity=0.573 Sum_probs=15.3
Q ss_pred HHHHHHHHHhCCccChhh
Q 032506 99 EIVMGLEEEFGISVEEES 116 (139)
Q Consensus 99 eLv~~LEeeFgI~i~~~~ 116 (139)
+-+.++|+++|+++|.+-
T Consensus 5 ~~i~~~e~~lg~~LP~~y 22 (129)
T smart00860 5 EEIAELEKKLGIKLPEDY 22 (129)
T ss_pred HHHHHHHHHHCCCCCHHH
Confidence 567889999999999864
No 49
>PRK00157 rplL 50S ribosomal protein L7/L12; Reviewed
Probab=31.05 E-value=47 Score=24.10 Aligned_cols=20 Identities=45% Similarity=0.728 Sum_probs=16.7
Q ss_pred ChHHHHHHHHHHHHHhCCcc
Q 032506 93 DSLDTVEIVMGLEEEFGISV 112 (139)
Q Consensus 93 DSLd~veLv~~LEeeFgI~i 112 (139)
.=+...||+-.||++|||+-
T Consensus 16 tllE~~eLv~~lee~fgv~a 35 (123)
T PRK00157 16 TVLELSELVKALEEKFGVSA 35 (123)
T ss_pred CHHHHHHHHHHHHHHcCCCc
Confidence 34677899999999999973
No 50
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=29.67 E-value=1.3e+02 Score=22.31 Aligned_cols=57 Identities=28% Similarity=0.328 Sum_probs=37.5
Q ss_pred CChHHHHHHHHHHHHHHhCCCCCCCCCCCCCccccCCChHHHHHHHHHHHHHhCCccC----hhh-hccCCCHHHHHHHH
Q 032506 56 AAKPETVDKVCQIVKKQLALPADTTVTGESKFAALGADSLDTVEIVMGLEEEFGISVE----EES-AQTISTVQDAADLI 130 (139)
Q Consensus 56 ~~~~ei~~~V~~Il~e~l~i~~~~~I~~dt~l~dLGlDSLd~veLv~~LEeeFgI~i~----~~~-l~~~~TV~dl~~~I 130 (139)
|+|+|-.+++...+++ ++++ +.-|++..-++.|+-..+ +++ ..++.|++++++-+
T Consensus 1 M~k~efL~~L~~~L~~---lp~~-----------------e~~e~l~~Y~e~f~d~~~~G~sEeeii~~LG~P~~iA~~i 60 (181)
T PF08006_consen 1 MNKNEFLNELEKYLKK---LPEE-----------------EREEILEYYEEYFDDAGEEGKSEEEIIAELGSPKEIAREI 60 (181)
T ss_pred CCHHHHHHHHHHHHHc---CCHH-----------------HHHHHHHHHHHHHHHhhhCCCCHHHHHHHcCCHHHHHHHH
Confidence 6788888888887763 3332 345677777777766543 344 35788888887776
Q ss_pred HH
Q 032506 131 EK 132 (139)
Q Consensus 131 ~~ 132 (139)
..
T Consensus 61 ~~ 62 (181)
T PF08006_consen 61 LA 62 (181)
T ss_pred HH
Confidence 54
No 51
>PF13592 HTH_33: Winged helix-turn helix
Probab=29.60 E-value=47 Score=20.42 Aligned_cols=21 Identities=33% Similarity=0.472 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHhCCccChhhh
Q 032506 97 TVEIVMGLEEEFGISVEEESA 117 (139)
Q Consensus 97 ~veLv~~LEeeFgI~i~~~~l 117 (139)
.-+|...|+++|||.+....+
T Consensus 7 ~~~i~~~I~~~fgv~ys~~~v 27 (60)
T PF13592_consen 7 LKEIAAYIEEEFGVKYSPSGV 27 (60)
T ss_pred HHHHHHHHHHHHCCEEcHHHH
Confidence 457888899999999876543
No 52
>TIGR00855 L12 ribosomal protein L7/L12. THis model resembles Pfam model pfam00542 but matches the full length of prokaryotic and organellar proteins rather than just the C-terminus.
Probab=29.39 E-value=51 Score=24.05 Aligned_cols=21 Identities=43% Similarity=0.683 Sum_probs=17.2
Q ss_pred CChHHHHHHHHHHHHHhCCcc
Q 032506 92 ADSLDTVEIVMGLEEEFGISV 112 (139)
Q Consensus 92 lDSLd~veLv~~LEeeFgI~i 112 (139)
+.=+...||+-.||++|||+-
T Consensus 16 LTllE~~eLv~~lee~fgV~a 36 (126)
T TIGR00855 16 MTVLELSELVKALEEKFGVSA 36 (126)
T ss_pred CCHHHHHHHHHHHHHhcCCCc
Confidence 334677899999999999974
No 53
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=27.55 E-value=43 Score=19.73 Aligned_cols=20 Identities=15% Similarity=0.346 Sum_probs=15.9
Q ss_pred hHHHHHHHHHHHHHHhCCCC
Q 032506 58 KPETVDKVCQIVKKQLALPA 77 (139)
Q Consensus 58 ~~ei~~~V~~Il~e~l~i~~ 77 (139)
...+...|++.|.+.+++++
T Consensus 18 ~~~tv~~lk~~i~~~~~~~~ 37 (64)
T smart00213 18 PSDTVSELKEKIAELTGIPV 37 (64)
T ss_pred CCCcHHHHHHHHHHHHCCCH
Confidence 34578899999988888765
No 54
>KOG3196 consensus NADH:ubiquinone oxidoreductase, NDUFV2/24 kD subunit [Energy production and conversion]
Probab=26.87 E-value=82 Score=25.03 Aligned_cols=81 Identities=20% Similarity=0.225 Sum_probs=47.9
Q ss_pred cccccccCCh--HHHHHHHHHHHHHHhCCCCCCCCCCCCCccccCCChHHHHHHHHHHHHHhCCccChhhhccCCCHHHH
Q 032506 49 PRFRVSCAAK--PETVDKVCQIVKKQLALPADTTVTGESKFAALGADSLDTVEIVMGLEEEFGISVEEESAQTISTVQDA 126 (139)
Q Consensus 49 ~r~~~~~~~~--~ei~~~V~~Il~e~l~i~~~~~I~~dt~l~dLGlDSLd~veLv~~LEeeFgI~i~~~~l~~~~TV~dl 126 (139)
++.+++..+. ..-.+.+.+-+.+++++..+ +.+.|-.|. +.-+|-+...=..=-+.|.+ ++.+-.|-.++
T Consensus 114 y~v~VC~ttpC~lrg~d~i~ea~~k~lgi~~G-ett~d~~Ft------l~e~eClGaCvnaPmi~IND-~yyedlt~k~l 185 (233)
T KOG3196|consen 114 YHVQVCTTTPCMLRGSDDILEACKKQLGIKVG-ETTKDGLFT------LEEVECLGACVNAPMIAIND-DYYEDLTPKKL 185 (233)
T ss_pred ceEEEecCcHHhhhccHHHHHHHHHHhCcccc-cccccccee------eecchhhhhhccCceeeecc-hhhccCCHHHH
Confidence 5666653221 22357788888899999885 888887774 11122222221222233333 45566788889
Q ss_pred HHHHHHHHhhh
Q 032506 127 ADLIEKLIETK 137 (139)
Q Consensus 127 ~~~I~~~~~~k 137 (139)
++-++++.+.|
T Consensus 186 ~eIle~L~~~k 196 (233)
T KOG3196|consen 186 VEILEDLKAGK 196 (233)
T ss_pred HHHHHHHhcCC
Confidence 88888877655
No 55
>PF14568 SUKH_6: SMI1-KNR4 cell-wall; PDB: 2PRV_A.
Probab=26.57 E-value=53 Score=21.88 Aligned_cols=17 Identities=24% Similarity=0.499 Sum_probs=11.3
Q ss_pred HHHHHHHHHhCCccChh
Q 032506 99 EIVMGLEEEFGISVEEE 115 (139)
Q Consensus 99 eLv~~LEeeFgI~i~~~ 115 (139)
+-+..+|+++|+++|.+
T Consensus 2 e~I~~~E~~Lg~~lP~~ 18 (120)
T PF14568_consen 2 EEIEEAEKKLGVKLPED 18 (120)
T ss_dssp HHHHHHHHHHTS---HH
T ss_pred hHHHHHHHHhCCCCCHH
Confidence 34778999999999975
No 56
>PF06755 DUF1219: Protein of unknown function (DUF1219); InterPro: IPR009610 This family consists of several hypothetical proteins which seem to be specific to the enterobacteria Escherichia coli and Shigella flexneri. Family members are often known as YeeV proteins and are around 125 residues in length. The function of this family is unknown.
Probab=26.43 E-value=34 Score=24.54 Aligned_cols=28 Identities=14% Similarity=0.285 Sum_probs=16.4
Q ss_pred ccccccCChHHHHHHHHHH-HHHHhCCCC
Q 032506 50 RFRVSCAAKPETVDKVCQI-VKKQLALPA 77 (139)
Q Consensus 50 r~~~~~~~~~ei~~~V~~I-l~e~l~i~~ 77 (139)
|-.-.|+++=++.+.+... +.+.+|+..
T Consensus 10 ~~~~~~~spV~vWQ~llt~LL~~HYGLtL 38 (114)
T PF06755_consen 10 RAASPCPSPVEVWQQLLTYLLEQHYGLTL 38 (114)
T ss_pred ccccCCCCHHHHHHHHHHHHHHHhcCCcc
Confidence 4444567776777766554 344566654
No 57
>COG0222 RplL Ribosomal protein L7/L12 [Translation, ribosomal structure and biogenesis]
Probab=26.06 E-value=66 Score=23.44 Aligned_cols=18 Identities=44% Similarity=0.815 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHhCCcc
Q 032506 95 LDTVEIVMGLEEEFGISV 112 (139)
Q Consensus 95 Ld~veLv~~LEeeFgI~i 112 (139)
|.+.+|+..+|+.|||+=
T Consensus 18 lel~eLvk~~eekfgVsa 35 (124)
T COG0222 18 LELSELVKALEEKFGVTA 35 (124)
T ss_pred HHHHHHHHHHHHHhCCcc
Confidence 556889999999999973
No 58
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=25.72 E-value=39 Score=21.35 Aligned_cols=36 Identities=14% Similarity=0.435 Sum_probs=26.6
Q ss_pred ChHHHHHHHHHHHHHHhCCCCC--------CCCCCCCCccccCC
Q 032506 57 AKPETVDKVCQIVKKQLALPAD--------TTVTGESKFAALGA 92 (139)
Q Consensus 57 ~~~ei~~~V~~Il~e~l~i~~~--------~~I~~dt~l~dLGl 92 (139)
...+++..|++.|.+..|++++ ..+.++.+|.+.|+
T Consensus 18 ~~~~tV~~lK~~i~~~~gi~~~~q~L~~~G~~L~d~~~L~~~~i 61 (74)
T cd01807 18 SEKESVSTLKKLVSEHLNVPEEQQRLLFKGKALADDKRLSDYSI 61 (74)
T ss_pred CCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCCHHHCCC
Confidence 3467899999999998888764 14666667777776
No 59
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=24.49 E-value=57 Score=20.28 Aligned_cols=36 Identities=11% Similarity=0.279 Sum_probs=25.6
Q ss_pred ChHHHHHHHHHHHHHHhCCCCC--------CCCCCCCCccccCC
Q 032506 57 AKPETVDKVCQIVKKQLALPAD--------TTVTGESKFAALGA 92 (139)
Q Consensus 57 ~~~ei~~~V~~Il~e~l~i~~~--------~~I~~dt~l~dLGl 92 (139)
.+..+...|++.|.+..|++++ ..+.++..+.+.|+
T Consensus 16 ~~~~tV~~lK~~i~~~~gi~~~~q~Li~~G~~L~d~~~l~~~~i 59 (70)
T cd01798 16 DPDTDIKQLKEVVAKRQGVPPDQLRVIFAGKELRNTTTIQECDL 59 (70)
T ss_pred CCCChHHHHHHHHHHHHCCCHHHeEEEECCeECCCCCcHHHcCC
Confidence 3567889999999999888753 23556666666665
No 60
>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional
Probab=24.27 E-value=1.4e+02 Score=23.60 Aligned_cols=45 Identities=18% Similarity=0.265 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCCCCCc-c--ccCCChHHHHHHHHHHHHHhCC
Q 032506 60 ETVDKVCQIVKKQLALPADTTVTGESKF-A--ALGADSLDTVEIVMGLEEEFGI 110 (139)
Q Consensus 60 ei~~~V~~Il~e~l~i~~~~~I~~dt~l-~--dLGlDSLd~veLv~~LEeeFgI 110 (139)
.+..++.+.+.++ + -+.+..++ . .-|.||+.++.++..+.+++++
T Consensus 11 ~~~~~v~~~i~~~-~-----li~~~~kilVa~SGG~DS~~LL~ll~~l~~~~~~ 58 (258)
T PRK10696 11 RLRRQVGQAIADF-N-----MIEEGDRVMVCLSGGKDSYTLLDILLNLQKRAPI 58 (258)
T ss_pred HHHHHHHHHHHHc-C-----CCCCCCEEEEEecCCHHHHHHHHHHHHHHHhCCC
Confidence 4666666666654 2 23333443 2 6799999999999988877553
No 61
>PRK14611 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=23.85 E-value=1e+02 Score=24.66 Aligned_cols=61 Identities=16% Similarity=0.207 Sum_probs=44.6
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCCCC--CCCcc-ccCCChHHHHHHHHHHHHHhCCccChhhhc
Q 032506 58 KPETVDKVCQIVKKQLALPADTTVTG--ESKFA-ALGADSLDTVEIVMGLEEEFGISVEEESAQ 118 (139)
Q Consensus 58 ~~ei~~~V~~Il~e~l~i~~~~~I~~--dt~l~-dLGlDSLd~veLv~~LEeeFgI~i~~~~l~ 118 (139)
+..++.+..+.+.+.++...+-.|.- +-+.. .||=.|-+.+-++..+.+.||..++.+++.
T Consensus 60 ~~n~v~~a~~~~~~~~g~~~~~~i~i~k~IP~~~GLGSSsA~aaA~l~al~~~~~~~l~~~~l~ 123 (275)
T PRK14611 60 EENIVYKALRLFERYTGIDINYSIFIEKNIPVGAGLGGGSSNAAVVLKYLNELLGNPLSEEELF 123 (275)
T ss_pred cccHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCCccHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 34566666667777777654323444 44445 899999999999999999999999888764
No 62
>CHL00083 rpl12 ribosomal protein L12
Probab=23.25 E-value=77 Score=23.24 Aligned_cols=20 Identities=35% Similarity=0.669 Sum_probs=16.7
Q ss_pred hHHHHHHHHHHHHHhCCccC
Q 032506 94 SLDTVEIVMGLEEEFGISVE 113 (139)
Q Consensus 94 SLd~veLv~~LEeeFgI~i~ 113 (139)
=+...||+..||++|||+-.
T Consensus 17 llE~~eLv~~le~~fgv~~~ 36 (131)
T CHL00083 17 LLEAAELVKQIEETFGVDAS 36 (131)
T ss_pred HHHHHHHHHHHHHHcCCCcc
Confidence 46778999999999999643
No 63
>PF15325 MRI: Modulator of retrovirus infection
Probab=22.15 E-value=64 Score=22.72 Aligned_cols=20 Identities=30% Similarity=0.408 Sum_probs=18.0
Q ss_pred cccCChHHHHHHHHHHHHHH
Q 032506 53 VSCAAKPETVDKVCQIVKKQ 72 (139)
Q Consensus 53 ~~~~~~~ei~~~V~~Il~e~ 72 (139)
+|||+..|+++.-..||.+-
T Consensus 2 VYcMnEAE~VDVALGILIE~ 21 (106)
T PF15325_consen 2 VYCMNEAEMVDVALGILIEG 21 (106)
T ss_pred eeeccHHHHHHHHHHHhhcc
Confidence 79999999999999998764
No 64
>PRK03188 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=20.88 E-value=1.2e+02 Score=24.28 Aligned_cols=60 Identities=8% Similarity=0.232 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCCCCC--Ccc-ccCCChHHHHHHHHHHHHHhCCccChhhhc
Q 032506 59 PETVDKVCQIVKKQLALPADTTVTGES--KFA-ALGADSLDTVEIVMGLEEEFGISVEEESAQ 118 (139)
Q Consensus 59 ~ei~~~V~~Il~e~l~i~~~~~I~~dt--~l~-dLGlDSLd~veLv~~LEeeFgI~i~~~~l~ 118 (139)
+.+.-+..+.+.+.++..+.-.|.-+. +.. .||=.|=+.+-++..+.+.||..++.+++.
T Consensus 64 ~nl~~~~~~~~~~~~~~~~~~~I~i~s~IP~~~GLGSSSA~a~A~l~al~~~~g~~ls~~el~ 126 (300)
T PRK03188 64 SNLAWRAAELLAEHVGRAPDVHLHIDKGIPVAGGMAGGSADAAAALVACDALWGLGLSRDELL 126 (300)
T ss_pred ccHHHHHHHHHHHHhCCCCCeEEEEEcCCcccCcchHHHHHHHHHHHHHHHHhCCCcCHHHHH
Confidence 456666677777777754322344444 444 789999999999999999999999988764
No 65
>PRK05988 formate dehydrogenase subunit gamma; Validated
Probab=20.84 E-value=1.3e+02 Score=22.43 Aligned_cols=45 Identities=18% Similarity=0.349 Sum_probs=28.3
Q ss_pred CCccccccCccc--cc----ccCChHHHHHHHHHHHHHHhCCCCCCCCCCCCCc
Q 032506 40 FPSLRMRSAPRF--RV----SCAAKPETVDKVCQIVKKQLALPADTTVTGESKF 87 (139)
Q Consensus 40 ~~~~~~~~~~r~--~~----~~~~~~ei~~~V~~Il~e~l~i~~~~~I~~dt~l 87 (139)
.+.|+.+|..|. ++ .|+-+. -++|.+.+.+.||++++ +.++|-.|
T Consensus 65 Y~~f~~~p~Gk~~I~VC~~~~C~~~G--~~~ll~~l~~~Lgi~~g-ett~Dg~f 115 (156)
T PRK05988 65 YHDFRTHPPGRHVLKLCRAEACQAMG--GDALAAHAKARLGIDFH-QTTADGAV 115 (156)
T ss_pred hhccCCCCCCCEEEEEeCCchhhcCC--HHHHHHHHHHHhCCCCC-CcCCCCeE
Confidence 345666665443 33 344333 36677777888899885 77887766
No 66
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=20.66 E-value=50 Score=20.18 Aligned_cols=39 Identities=13% Similarity=0.301 Sum_probs=29.1
Q ss_pred ChHHHHHHHHHHHHHHhCCCCC--------CCCCCCCCccccCCChH
Q 032506 57 AKPETVDKVCQIVKKQLALPAD--------TTVTGESKFAALGADSL 95 (139)
Q Consensus 57 ~~~ei~~~V~~Il~e~l~i~~~--------~~I~~dt~l~dLGlDSL 95 (139)
...+++..+++.|.+..+++++ ..+.++.+|.++|+..-
T Consensus 13 ~~~~tV~~lK~~i~~~~~~~~~~~~L~~~G~~L~d~~tL~~~~i~~~ 59 (69)
T PF00240_consen 13 DPDDTVADLKQKIAEETGIPPEQQRLIYNGKELDDDKTLSDYGIKDG 59 (69)
T ss_dssp ETTSBHHHHHHHHHHHHTSTGGGEEEEETTEEESTTSBTGGGTTSTT
T ss_pred CCCCCHHHhhhhcccccccccccceeeeeeecccCcCcHHHcCCCCC
Confidence 3467899999999999998874 13566777778887643
No 67
>PRK07571 bidirectional hydrogenase complex protein HoxE; Reviewed
Probab=20.34 E-value=1.5e+02 Score=22.39 Aligned_cols=45 Identities=16% Similarity=0.347 Sum_probs=28.2
Q ss_pred CCccccccCccc--cc----ccCChHHHHHHHHHHHHHHhCCCCCCCCCCCCCc
Q 032506 40 FPSLRMRSAPRF--RV----SCAAKPETVDKVCQIVKKQLALPADTTVTGESKF 87 (139)
Q Consensus 40 ~~~~~~~~~~r~--~~----~~~~~~ei~~~V~~Il~e~l~i~~~~~I~~dt~l 87 (139)
...|+.+|..|. ++ .|+-+. -++|.+.+.+.||++++ +.++|-.|
T Consensus 78 Y~~f~~~P~Gk~~I~VC~g~aC~~~G--~~~ll~~l~~~Lgi~~g-ett~DG~f 128 (169)
T PRK07571 78 YHLFSLKPSGEHTCVVCTGTACYVKG--SAAILEDLENELGIKAG-ETTADGKL 128 (169)
T ss_pred ccccCcCCCCCEEEEEcCChHHHHCC--cHHHHHHHHHHhCCCCC-CcCCCCeE
Confidence 345666775443 33 233222 36677777888899885 78888766
No 68
>PF08861 DUF1828: Domain of unknown function DUF1828; InterPro: IPR014960 These proteins are functionally uncharacterised.
Probab=20.02 E-value=2.5e+02 Score=18.49 Aligned_cols=42 Identities=17% Similarity=0.282 Sum_probs=33.1
Q ss_pred hHHHHHHHHHHHHHhCCccChhhhccCCCHHHHHHHHHHHHh
Q 032506 94 SLDTVEIVMGLEEEFGISVEEESAQTISTVQDAADLIEKLIE 135 (139)
Q Consensus 94 SLd~veLv~~LEeeFgI~i~~~~l~~~~TV~dl~~~I~~~~~ 135 (139)
|=..-+++..+=..||+++.+.++.-..+.+++...+...++
T Consensus 44 s~~R~~~l~~il~~~gv~~~~~el~~~~~~~~~~~~~~~liq 85 (90)
T PF08861_consen 44 SKKRKKILNSILNGFGVELDEGELFIKTSEENFPQAKHRLIQ 85 (90)
T ss_pred chHHHHHHHHHHHHcCccccCCEEEEEeCHHHHHHHHHHHHH
Confidence 666788999999999999999888666677777777666554
Done!